BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044993
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 246/670 (36%), Positives = 351/670 (52%), Gaps = 64/670 (9%)
Query: 50 TTGAWNFLGLEKDNVIPSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWR 109
TT +W+FLG +P S E ++++G +D+GI PES SF DE P P KW+
Sbjct: 1 TTRSWDFLGFPL--TVPRRSQVE-----SNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 110 GTCQNDDHYGVECNRKLIGIRHYNKGL-ISAATKRNPAFDIPPKLKTGRDLDGHGTHTLS 168
GTC+ +++ CNRK+IG R Y+ G IS P RD +GHGTHT S
Sbjct: 54 GTCETSNNF--RCNRKIIGARSYHIGRPISPGDVNGP-----------RDTNGHGTHTAS 100
Query: 169 AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND-CMEQDTIEA 227
AAG V + GTA+GG P AR+A+YKVCW ND C + D + A
Sbjct: 101 TAAGGLVSQANLY-GLGLGTARGGVPLARIAAYKVCW-----------NDGCSDTDILAA 148
Query: 228 FDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNM 287
+DDAI DGVDII++S+G N + D + IG+FHA G+LT ++GNGGP T ++
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 288 APWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDA 347
+PW+L+V ASTMDR+F + +GN + +G S++ + YPL+SG D DK
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT-FDNQYYPLVSGRDIP-NTGFDKST 266
Query: 348 S--CKPGTLDRKKVQGRILVC---LHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTK 402
S C +++ ++G+I+VC + +++ A ++T + ++ SY LP +
Sbjct: 267 SRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYP-LPSSV 325
Query: 403 LKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIA 462
L D A L YI S + A + + T +P V SFSSRGPNR +IKPD+
Sbjct: 326 LDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISG 384
Query: 463 PGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIK 522
PGV I+AA+ S P G R R F + GTSMS P + GIA +KT +P WSPAAIK
Sbjct: 385 PGVEILAAWPSV-APVGGIR--RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIK 441
Query: 523 SAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALDPGXXXXXXXXXXXXXXCN 582
SA+MTTA +A P +E FAYGSGHV+P A+ PG C
Sbjct: 442 SALMTTASPMNARFNPQAE--------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCG 493
Query: 583 RGYKEDVVKKFVVDPAKHPCPKSFELANFNYPSIAI---PELAGSVTVTRKLKNVG-TPG 638
+GY V++ D + + + + NYPS + P + R L +V
Sbjct: 494 QGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAS 553
Query: 639 TYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWSDG 698
TY+A + G++ V P+ L+F + + K+F +T + + V L+WSDG
Sbjct: 554 TYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT------VRGSIKGFVVSASLVWSDG 607
Query: 699 THRVRSPIAL 708
H VRSPI +
Sbjct: 608 VHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 342 bits (876), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 240/679 (35%), Positives = 349/679 (51%), Gaps = 61/679 (8%)
Query: 50 TTGAWNFLGLEKDNVIPSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWR 109
TT +FL L PS+ W + G+DVI+ +DSGI PES SF D+ M IP +W+
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 110 GTCQNDDHYGVE-CNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDLDGHGTHTLS 168
G C+ + CNRKLIG ++NKG+++ +P +I + + RD DGHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILA----NDPTVNI--TMNSARDTDGHGTHCAS 109
Query: 169 AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAF 228
AGNF + V F + GTA+G +PRAR+A YK + D I A
Sbjct: 110 ITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSF----------NEGTFTSDLIAAM 158
Query: 229 DDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMA 288
D A+ DGVD+I++S GY I D + I +F A M GVL A++GN GP ++NN +
Sbjct: 159 DQAVADGVDMISISYGYRFIP-LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGS 217
Query: 289 PWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDAS 348
PW+L V + DR FAG +TLGN ++RG SL P +++ + + N T D S
Sbjct: 218 PWILCVASGHTDRTFAGTLTLGNGLKIRGWSL---FPARAF---VRDSPVIYNKTLSDCS 271
Query: 349 CKPGTLDRKKVQGRILVC------LHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTK 402
+ + + I++C + + A+ A I+ G F ++ P
Sbjct: 272 SEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVV 331
Query: 403 LKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIA 462
+ K+ + V++Y+K++ A +T +T +P+P VA+ S+RGP+R I KPD++A
Sbjct: 332 VNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILA 391
Query: 463 PGVNIVAAYTSERGPTGYARDNRRFAFTAMD-----GTSMSTPIVAGIAGLIKTVHPDWS 517
PGV I+AAY P +A + D GTSM+ P AGIA ++K HP+WS
Sbjct: 392 PGVLILAAYP----PNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWS 447
Query: 518 PAAIKSAIMTTARATDANNKPISEF-NGKEATAFAYGSGHVDPNSALDPGXXXXXXXXXX 576
P+AI+SA+MTTA D KPI + N K AT G+GHVDPN ALDPG
Sbjct: 448 PSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDY 507
Query: 577 XXXXCNRGYKEDVVKKFVVDPAKHPCPKSFELANFNYPS-IAIPELAGSVTVT-----RK 630
C+ + E+ K A H C S A+ NYPS IA+ + G+ T+ R
Sbjct: 508 VNLLCSLNFTEEQFKTIARSSASHNC--SNPSADLNYPSFIALYSIEGNFTLLEQKFKRT 565
Query: 631 LKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYV 689
+ NVG TYKA++K + V P L F + NE++++ +T + +
Sbjct: 566 VTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRN---- 621
Query: 690 FGELIW--SDGTHRVRSPI 706
G + W +G H VRSPI
Sbjct: 622 VGSITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 22/133 (16%)
Query: 433 AIEPSPAVASFSSRGP---NRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAF 489
A++ + FSSRGP NR+ KP+V+APG I+AA S D +
Sbjct: 302 AVDKYDVITDFSSRGPTADNRL-----KPEVVAPGNWIIAARASGTSMGQPIND----YY 352
Query: 490 TAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATA 549
TA GT+M+TP VAGIA L+ HP W+P +K+A++ TA KP E
Sbjct: 353 TAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV----KP------DEIAD 402
Query: 550 FAYGSGHVDPNSA 562
AYG+G V+ A
Sbjct: 403 IAYGAGRVNAYKA 415
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 24/148 (16%)
Query: 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAA 214
T D +GHGTH S AAG GA N +Y KG +P A++ KV
Sbjct: 173 TPYDDNGHGTHVASIAAGT-----GAASNGKY---KGMAPGAKLVGIKVL--------NG 216
Query: 215 HGNDCMEQDTIEAFDDAIHD----GVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLT 270
G+ + D I D A+ + G+ +I +SLG +D +D + +A G++
Sbjct: 217 QGSGSIS-DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDG-TDSLSQAVNNAWDAGLVV 274
Query: 271 VAASGNGGPEPQTINN--MAPWMLTVGA 296
V A+GN GP T+ + A ++TVGA
Sbjct: 275 VVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Query: 440 VASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGY-ARDNRRFAFTAMDGTSMS 498
VA FSSRGP + IKPDV+APG I++A +S + + A + ++A+ M GTSM+
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAY--MGGTSMA 257
Query: 499 TPIVAG 504
TPIVAG
Sbjct: 258 TPIVAG 263
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG+A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTA 529
I++ + TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 35/130 (26%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 170 AVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAK 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAY 552
GTSM++P VAG A LI + HP+W+ ++S++ T K +F Y
Sbjct: 209 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------KLGNSFYY 254
Query: 553 GSGHVDPNSA 562
G G ++ +A
Sbjct: 255 GKGLINVQAA 264
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+IV+ + + A
Sbjct: 170 AVDSSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK-------------YGAK 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT+M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 209 SGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+IV+ + + A
Sbjct: 170 AVDSSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK-------------YGAK 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT+M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 209 SGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATA 549
I++ + TA + + N S EA A
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAA 268
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 170 AVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAK 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 209 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 35/130 (26%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAK 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAY 552
GTSM++P VAG A LI + HP+W+ ++S++ T K +F Y
Sbjct: 218 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------KLGDSFYY 263
Query: 553 GSGHVDPNSA 562
G G ++ +A
Sbjct: 264 GKGLINVQAA 273
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GTSM+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 143 RNPAFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYK 202
R A +P + T +D +GHGTH AG A N+ G G +P A + + K
Sbjct: 44 RGGASFVPGEPST-QDGNGHGTHV----AGTI-----AALNNSIGV-LGVAPSAELYAVK 92
Query: 203 VCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFH 262
V A G + + + A ++G+ + +SLG + + L V
Sbjct: 93 VL--------GADGRGAIS-SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NS 139
Query: 263 ATMNGVLTVAASGNGG 278
AT GVL VAASGN G
Sbjct: 140 ATSRGVLVVAASGNSG 155
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S A FSS GP DV+APGV+I + + + A+
Sbjct: 170 AVDSSNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGAL 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
GTSM++P VAG A LI + HP+W+ ++S++ TA
Sbjct: 209 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAK 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAK 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GTSM++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GT M+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATA 549
I++ + TA + + N S EA A
Sbjct: 238 VQIRNHLKNTATSLGSTNLYGSGLVNAEAAA 268
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S A FSS GP DV+APGV+I + + + A+
Sbjct: 170 AVDSSNQRAPFSSVGPEL--------DVMAPGVSICSTLPGGK-------------YGAL 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
GT+M++P VAG A LI + HP+W+ ++S++ TA
Sbjct: 209 SGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 170 AVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK-------------YGAK 208
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 209 SGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GT M+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GT M+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 21/84 (25%)
Query: 456 IKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIK----T 511
IKPD+ APG +I+++ + + YA+ + GTSMS P+VAGI GL++ T
Sbjct: 389 IKPDIAAPGQDILSSVANNK----YAK---------LSGTSMSAPLVAGIMGLLQKQYET 435
Query: 512 VHPDWSPAA----IKSAIMTTARA 531
+PD +P+ K +M++A A
Sbjct: 436 QYPDMTPSERLDLAKKVLMSSATA 459
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 27/104 (25%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D++APGVN+ + Y + +++GT M+TP VAG A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSA 562
I++ + TA + + N YGSG V+ +A
Sbjct: 238 VQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 28/138 (20%)
Query: 143 RNPAFDIPPKLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVAS 200
R A +P + T +D +GHGTH AA N + +G +P A + +
Sbjct: 44 RGGASFVPGEPST-QDGNGHGTHVAGTIAALDNSIGVLGV------------APSAELYA 90
Query: 201 YKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGA 260
KV A G+ + + + A ++G+ + +SLG + + L V
Sbjct: 91 VKVL--------GASGSGAIS-SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV---- 137
Query: 261 FHATMNGVLTVAASGNGG 278
AT GVL VAASGN G
Sbjct: 138 NSATSRGVLVVAASGNSG 155
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 35/130 (26%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAY 552
GT M++P VAG A LI + HP+W+ ++S++ T K +F Y
Sbjct: 218 SGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------KLGDSFYY 263
Query: 553 GSGHVDPNSA 562
G G ++ +A
Sbjct: 264 GKGLINVQAA 273
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAK 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 SGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 179 AVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK-------------YGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
+GTS ++P VAG A LI + HP+W+ ++S++ T
Sbjct: 218 NGTSXASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 21/96 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ S ASFSS GP DV+APGV+I + + + A
Sbjct: 167 AVDSSNQRASFSSVGPEL--------DVMAPGVSIWSTLPGNK-------------YGAK 205
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528
GT M++P VAG A LI + HP+W+ ++S++ T
Sbjct: 206 SGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 440 VASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGY-ARDNRRFAFTAMDGTSMS 498
VA FSSRGP + IKPDV+APG I++A +S + + A + ++A+ GTS +
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXG--GTSXA 257
Query: 499 TPIVAG 504
TPIVAG
Sbjct: 258 TPIVAG 263
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 21/108 (19%)
Query: 423 AFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAA-YTSERGPTGYA 481
A + +A T A S A ASFS+ G S + D+ APG +I +A YTS+
Sbjct: 168 ARVAEALTVGATTSSDARASFSNYG------SCV--DLFAPGASIPSAWYTSDT------ 213
Query: 482 RDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
A ++GTSM+TP VAG+A L +P +PA++ SAI+ A
Sbjct: 214 ------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 21/89 (23%)
Query: 441 ASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTP 500
ASFSS G + DV+APGV+I + P G + A +GTSM+TP
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQSTL-----PGG--------TYGAYNGTSMATP 225
Query: 501 IVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
VAG A LI + HP W+ A ++ + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A+ S ASFSS G + DV+APGV+I + P G + A
Sbjct: 179 AVNSSNQRASFSSAGS--------ELDVMAPGVSIQSTL-----PGG--------TYGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GT M+TP VAG A LI + HP W+ A ++ + +TA
Sbjct: 218 NGTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A+ S ASFSS G + DV+APGV+I + P G + A
Sbjct: 179 AVNSSNQRASFSSVGS--------ELDVMAPGVSIQSTL-----PGG--------TYGAY 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GT M+TP VAG A LI + HP W+ A ++ + +TA
Sbjct: 218 NGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APGV++ + Y S +T++
Sbjct: 178 AVDSNKNRASFSSVGS--------ELEVMAPGVSVYSTYPSNT-------------YTSL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + +P S + +++ + +TA
Sbjct: 217 NGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTA 253
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 225 IEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGG--PEPQ 282
+ + A +G+D+I +SLG + + L V A +G++ VAA+GN G
Sbjct: 107 VSGIEWATQNGLDVINMSLGGPSGSTALKQAV----DKAYASGIVVVAAAGNSGNSGSQN 162
Query: 283 TINNMAPW--MLTVGASTMDREFAGYITLGNNKRLR--GASLSVDMPRKSYPLISGEDA- 337
TI A + ++ VGA ++ A + ++G+ + G S+ P +Y ++G
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYSTYPSNTYTSLNGTSMA 222
Query: 338 --RMANATDKDASCKPGTLDRKKVQGRI 363
+A A S P TL +V+ R+
Sbjct: 223 SPHVAGAAALILSKYP-TLSASQVRNRL 249
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 32/129 (24%)
Query: 441 ASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTS-ERGPTGYARDNRRFAFTAMDGTSMST 499
ASFS+ G + D+ APG +I++ S R P A++ M GTSM+T
Sbjct: 235 ASFSNYG--------VDVDLAAPGQDILSTVDSGTRRPV-------SDAYSFMAGTSMAT 279
Query: 500 PIVAGIAGLI----KTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSG 555
P V+G+A L+ +V+ + +PA +K +++T S FNG+ A GSG
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDRAL--GSG 327
Query: 556 HVDPNSALD 564
VD +A++
Sbjct: 328 IVDAEAAVN 336
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 32/129 (24%)
Query: 441 ASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTS-ERGPTGYARDNRRFAFTAMDGTSMST 499
ASFS+ G + D+ APG +I++ S R P A++ M GTSM+T
Sbjct: 235 ASFSNYG--------VDVDLAAPGQDILSTVDSGTRRPV-------SDAYSFMAGTSMAT 279
Query: 500 PIVAGIAGLI----KTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSG 555
P V+G+A L+ +V+ + +PA +K +++T S FNG+ A GSG
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDRAL--GSG 327
Query: 556 HVDPNSALD 564
VD +A++
Sbjct: 328 IVDAEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 32/129 (24%)
Query: 441 ASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTS-ERGPTGYARDNRRFAFTAMDGTSMST 499
ASFS+ G + D+ APG +I++ S R P A++ M GTSM+T
Sbjct: 235 ASFSNYG--------VDVDLAAPGQDILSTVDSGTRRPV-------SDAYSFMAGTSMAT 279
Query: 500 PIVAGIAGLI----KTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSG 555
P V+G+A L+ +V+ + +PA +K +++T S FNG+ A GSG
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT----------SPFNGRLDRAL--GSG 327
Query: 556 HVDPNSALD 564
VD +A++
Sbjct: 328 IVDAEAAVN 336
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 17/68 (25%)
Query: 456 IKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIK----T 511
IKPD+ APG +I+++ + + YA+ + GTS S P+VAGI GL++ T
Sbjct: 380 IKPDIAAPGQDILSSVANNK----YAK---------LSGTSXSAPLVAGIXGLLQKQYET 426
Query: 512 VHPDWSPA 519
+PD +P+
Sbjct: 427 QYPDXTPS 434
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 178 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 217 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 178 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 217 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 179 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 179 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 217
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 218 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 178 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 217 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 178 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GTSM++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 217 NGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 21/79 (26%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ +ASFS+ G DV+APGV+IV+ T R + M
Sbjct: 184 AVDQYDRLASFSNYGT--------WVDVVAPGVDIVSTITGNR-------------YAYM 222
Query: 493 DGTSMSTPIVAGIAGLIKT 511
GTSM++P VAG+A L+ +
Sbjct: 223 SGTSMASPHVAGLAALLAS 241
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 30/157 (19%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
DL+ HGTH AA A N+ G A G +P R+ + + D N +
Sbjct: 68 DLNNHGTHVAGIAA--------AETNNATGIA-GMAPNTRILAVRAL-----DRNGS--- 110
Query: 218 DCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNG 277
D +A A G ++I +SLG D L + V +A G + VAA+GN
Sbjct: 111 -GTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNKGSVVVAAAGNN 165
Query: 278 GP----EPQTINNMAPWMLTVGASTMDREFAGYITLG 310
G EP + N ++ VGA A + G
Sbjct: 166 GSSTTFEPASYEN----VIAVGAVDQYDRLASFSNYG 198
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 21/97 (21%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
A++ + ASFSS G + +V+APG + + Y PT + +
Sbjct: 178 AVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTY-----PTN--------TYATL 216
Query: 493 DGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+GT M++P VAG A LI + HP+ S + +++ + +TA
Sbjct: 217 NGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 37/160 (23%)
Query: 419 KDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERG-- 476
KD A M + T + + ++ FS+ G N D+ APG + AY ++ G
Sbjct: 304 KDVPASMDNVVTVGSTDQKSNLSEFSNFGMNY-------TDIAAPGGSF--AYLNQFGVD 354
Query: 477 ---PTGYAR--------DNRRFAFTAMDGTSMSTPIVAG-IAGLIKTVHPDWSPAAIKSA 524
GY +N R+ + A GTS++TP V+G +A +I H + P K+
Sbjct: 355 KWMNEGYMHKENILTTANNGRYIYQA--GTSLATPKVSGALALIIDKYHLEKHPD--KAI 410
Query: 525 IMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564
+ T NNKP S YG G +D AL+
Sbjct: 411 ELLYQHGTSKNNKPFSR----------YGHGELDVYKALN 440
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 459 DVIAPGVNIVAA-YTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWS 517
D+ APG +I ++ YTS A + GTSM++P VAG+A L +P+ S
Sbjct: 198 DIYAPGSSITSSWYTSNS------------ATNTISGTSMASPHVAGVAALYLDENPNLS 245
Query: 518 PAAIKSAIMTTARA 531
PA + + + T A A
Sbjct: 246 PAQVTNLLKTRATA 259
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 482 RDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
+ N+ + + +GTSM+TP V+G+A L+ + HP+ S + +++A+ TA
Sbjct: 357 QGNQDYEY--YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 37/160 (23%)
Query: 419 KDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERG-- 476
KD A M + T + + ++ FS+ G N D+ APG + AY ++ G
Sbjct: 328 KDVPASMDNVVTVGSTDQKSNLSEFSNFGMNY-------TDIAAPGGSF--AYLNQFGVD 378
Query: 477 ---PTGYAR--------DNRRFAFTAMDGTSMSTPIVAG-IAGLIKTVHPDWSPAAIKSA 524
GY +N R+ + A GT+++TP V+G +A +I H + P K+
Sbjct: 379 KWMNEGYMHKENILTTANNGRYIYQA--GTALATPKVSGALALIIDKYHLEKHPD--KAI 434
Query: 525 IMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564
+ T NNKP S YG G +D AL+
Sbjct: 435 ELLYQHGTSKNNKPFSR----------YGHGELDVYKALN 464
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 215 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 251
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 252 MGTAMATPHVSGVVALIQAAY 272
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 74 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 133
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 134 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 188
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 189 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 244
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 245 DDSYETLMG 253
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 206 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 242
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 243 MGTAMATPHVSGVVALIQAAY 263
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 65 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 125 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 179
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 180 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 235
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 236 DDSYETLMG 244
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 204 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 240
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 241 MGTAMATPHVSGVVALIQAAY 261
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 233
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 234 DDSYETLMG 242
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 284 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 320
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 321 MGTAMATPHVSGVVALIQAAY 341
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 203 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 257
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 258 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 313
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 314 DDSYETLMG 322
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 284 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 320
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 321 MGTAMATPHVSGVVALIQAAY 341
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 203 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 257
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 258 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 313
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 314 DDSYETLMG 322
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 284 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 320
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 321 MGTAMATPHVSGVVALIQAAY 341
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCMEQDTIEAFD-DAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGV 268
G + D I A D DA D ++I++SLG +L D ++I A++A G+
Sbjct: 203 AILGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYD-MIIQAYNA---GI 256
Query: 269 LTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM---- 324
+ VAASGN G + P ++ VGA + A + +N++ ++ VD+
Sbjct: 257 VIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTY 312
Query: 325 PRKSYPLISG 334
P SY + G
Sbjct: 313 PDDSYETLMG 322
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 284 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 320
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 321 MGTAMATPHVSGVVALIQAAY 341
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGA-----FCNHRYGTAKGGSPRARVA-SYKV 203
KL+ D +GHGTH + AA N + VG + R A+G + +A +
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 204 CWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHA 263
D G+ + D DDA ++I++SLG +L D ++I A++A
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DDA---AAEVISMSLGGPADDSYLYD-MIIQAYNA 254
Query: 264 TMNGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVD 323
G++ VAASGN G + P ++ VGA + A + +N++ ++ VD
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVD 307
Query: 324 M----PRKSYPLISG 334
+ P SY + G
Sbjct: 308 ILSTYPDDSYETLMG 322
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 215 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 251
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 252 MGTAMATPHVSGVVALIQAAY 272
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGA-----FCNHRYGTAKGGSPRARVA-SYKV 203
KL+ D +GHGTH + AA N + VG + R A+G + +A
Sbjct: 74 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQ 133
Query: 204 CWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHA 263
D G+ + D DD D ++I++SLG +L D ++I A++A
Sbjct: 134 AILGPDGVADKDGDGIIAGDP----DD---DAAEVISMSLGGPADDSYLYD-MIIQAYNA 185
Query: 264 TMNGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVD 323
G++ VAASGN G + P ++ VGA + A + +N++ ++ VD
Sbjct: 186 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVD 238
Query: 324 M----PRKSYPLISG 334
+ P SY + G
Sbjct: 239 ILSTYPDDSYETLMG 253
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 281 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 317
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT+M+TP V+G+ LI+ +
Sbjct: 318 MGTAMATPHVSGVVALIQAAY 338
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 140 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 199
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 200 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 254
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 255 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 310
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 311 DDSYETLMG 319
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 204 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 240
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT M+TP V+G+ LI+ +
Sbjct: 241 MGTXMATPHVSGVVALIQAAY 261
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 233
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 234 DDSYETLMG 242
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 23/81 (28%)
Query: 433 AIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAM 492
AI+ + +ASFS+R +P+V APGV+I++ Y + ++ +
Sbjct: 204 AIDSNDNIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETL 240
Query: 493 DGTSMSTPIVAGIAGLIKTVH 513
GT M+TP V+G+ LI+ +
Sbjct: 241 MGTCMATPHVSGVVALIQAAY 261
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDM----P 325
VAASGN G + P ++ VGA + A + +N++ ++ VD+ P
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF----SNRQPEVSAPGVDILSTYP 233
Query: 326 RKSYPLISG 334
SY + G
Sbjct: 234 DDSYETLMG 242
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 462 APGVNIVAAY-TSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAA 520
APG NI++ + GP R ++ GTSM+ P V+G+A L+ S A
Sbjct: 249 APGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVI------SAAN 295
Query: 521 IKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564
+T + +D + S FNG+ GSG VD N+A++
Sbjct: 296 SIGKTLTPSELSDILVRTTSRFNGRLDRGL--GSGIVDANAAVN 337
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 460 VIAPGVNIVAAY-TSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
+ APG NI++ + GP R ++ GTSM+ P V+G+A L+ S
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALVI------SA 293
Query: 519 AAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564
A +T + +D + S FNG+ GSG VD N+A++
Sbjct: 294 ANSIGKTLTPSELSDILVRTTSRFNGRLDRGL--GSGIVDANAAVN 337
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
DV APG +I + Y PT + ++ GTSM+TP VAG+AGL+ + S
Sbjct: 201 DVAAPGSSIYSTY-----PTS--------TYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 519 AAIKSAIMTTA 529
+ I++AI TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 23/89 (25%)
Query: 441 ASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTP 500
+SFS+ G S++ DV APG I + Y PT + ++ GTSM+TP
Sbjct: 191 SSFSTYG------SVV--DVAAPGSWIYSTY-----PTS--------TYASLSGTSMATP 229
Query: 501 IVAGIAGLIKTVHPDWSPAAIKSAIMTTA 529
VAG+AGL+ + S + I++AI TA
Sbjct: 230 HVAGVAGLLASQGR--SASNIRAAIENTA 256
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 492 MDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPI 539
M+GTS +TP +G L+ + +PD S ++ + +A DA ++P+
Sbjct: 332 MNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 VFL--NKPTKKLTTGAWNFLGLEKDNVIPSNSTWEKARF 76
+FL P LT W F GL K+ VI S +T + ARF
Sbjct: 117 IFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 VFL--NKPTKKLTTGAWNFLGLEKDNVIPSNSTWEKARF 76
+FL P LT W F GL K+ VI S +T + ARF
Sbjct: 117 IFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 440 VASFSSRGPNRI--DPSIIKPDV--IAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGT 495
VA FSSRG R D I K DV APG AA S GYA + GT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPG----AAVYSTWFDGGYAT---------ISGT 248
Query: 496 SMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATD 533
SM++P AG+A I P S ++ + T A D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D GHGTH +A N G + YG A P A + +YKV D + + +
Sbjct: 67 DRQGHGTHVAGSALAN-----GGTGSGVYGVA----PEADLWAYKVL----GDDGSGYAD 113
Query: 218 DCMEQ-----DTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVA 272
D E D A + + +I +SLG + +++ V +A GVL +A
Sbjct: 114 DIAEAIRHAGDQATALNTKV-----VINMSLGSSGESSLITNAV----DYAYDKGVLIIA 164
Query: 273 ASGNGGPEPQTI 284
A+GN GP+P +I
Sbjct: 165 AAGNSGPKPGSI 176
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D+ PG +I++ + G R ++ GTSM+TP VAG+A + T+ +
Sbjct: 200 DIFGPGTDILSTWIG-----GSTR--------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 519 AAIKSAIMTTARATDANNKPISEFN 543
+A + I TA D +N P N
Sbjct: 247 SACR-YIADTANKGDLSNIPFGTVN 270
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 21/79 (26%)
Query: 457 KPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVH--- 513
K ++APG +I+ A P G + GTS +TPIV+G+A L+ ++
Sbjct: 198 KQGILAPGKDILGAK-----PNG--------GTIRLSGTSFATPIVSGVAALLLSLQIKR 244
Query: 514 ---PDWSPAAIKSAIMTTA 529
PD P +K+A++ +A
Sbjct: 245 GEKPD--PQKVKNALLASA 261
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 221 EQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPE 280
+ D A + A+++G +II VS G A + N VL +AA+GN G E
Sbjct: 104 QLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCE 163
Query: 281 PQTINNMAPWMLTVGA 296
+ P +L VGA
Sbjct: 164 CLHVPASLPTVLAVGA 179
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D+ PG +I++ + G R ++ GTSM+TP VAG+A + T+ +
Sbjct: 200 DIFGPGTSILSTWIG-----GSTR--------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 519 AAIKSAIMTTARATDANNKPISEFN 543
+A + I TA D +N P N
Sbjct: 247 SACR-YIADTANKGDLSNIPFGTVN 270
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP 518
D+ PG +I++ + G R ++ GTSM+TP VAG+A + T+ +
Sbjct: 200 DIFGPGTSILSTWIG-----GSTR--------SISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 519 AAIKSAIMTTARATDANNKPISEFN 543
+A + I TA D +N P N
Sbjct: 247 SACR-YIADTANKGDLSNIPFGTVN 270
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D +GHGTH AG + G+ YG A P A + +YKV S ++
Sbjct: 67 DRNGHGTHV----AGTALADGGSDQAGIYGVA----PDADLWAYKVLLDSGSGYS----- 113
Query: 218 DCMEQDTIEAFDDAIHDGVD-IITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGN 276
D + A D A G II++SLG +S V +A GVL VAA+GN
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGN 169
Query: 277 GGPEPQTI 284
G TI
Sbjct: 170 SGYSQGTI 177
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATD 533
+ + GTSM+TP V+G+A I +P S ++S + A++ D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D +GHGTH AG + G+ YG A P A + +YKV S ++
Sbjct: 67 DRNGHGTHV----AGTALADGGSDQAGIYGVA----PDADLWAYKVLLDSGSGYS----- 113
Query: 218 DCMEQDTIEAFDDAIHDGVD-IITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGN 276
D + A D A G II++SLG +S V +A GVL VAA+GN
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGN 169
Query: 277 GGPEPQTI 284
G TI
Sbjct: 170 SGYSQGTI 177
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATD 533
+ + GT M+TP V+G+A I +P S ++S + A++ D
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P + + ++ P LT AW GL K VI S +
Sbjct: 112 QRNVNVFKFII----PQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLD 167
Query: 73 KARF 76
ARF
Sbjct: 168 SARF 171
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWEKARF----GEDVIIGGIDSGIC 90
P+ + + ++ P LT AW GL +I S + ARF GE + G+ S C
Sbjct: 130 PDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERL---GVHS--C 184
Query: 91 PESESFSDEEMGPIPSKWRG 110
E +PS W G
Sbjct: 185 SCHGWVIGEHGDSVPSVWSG 204
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWEKARF----GEDVIIGGIDSGIC 90
P+ + + ++ P LT AW GL +I S + ARF GE + G+ S C
Sbjct: 129 PDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERL---GVHS--C 183
Query: 91 PESESFSDEEMGPIPSKWRG 110
E +PS W G
Sbjct: 184 SCHGWVIGEHGDSVPSVWSG 203
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWEKARF 76
P + + ++ P LT AW GL ++ VI S + + ARF
Sbjct: 129 PNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARF 170
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD 515
D++APGV I + Y +GYA + GT+M+ P VAG LI + D
Sbjct: 226 DIVAPGVGIKSTYLD----SGYAE---------LSGTAMAAPHVAGALALIINLAED 269
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD 515
D++APGV I + Y +GYA + GT+M+ P VAG LI + D
Sbjct: 226 DIVAPGVGIKSTYLD----SGYAE---------LSGTAMAAPHVAGALALIINLAED 269
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD 515
D++APGV I + Y +GYA + GT+M+ P VAG LI + D
Sbjct: 226 DIVAPGVGIKSTYLD----SGYAE---------LSGTAMAAPHVAGALALIINLAED 269
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 13/57 (22%)
Query: 459 DVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD 515
D++APGV I + Y +GYA + GT+M+ P VAG LI + D
Sbjct: 208 DIVAPGVGIKSTYLD----SGYAE---------LSGTAMAAPHVAGALALIINLAED 251
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P+ + + ++ P LT W GL K VI S +
Sbjct: 111 QRNVNVFKFII----PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLD 166
Query: 73 KARF 76
ARF
Sbjct: 167 SARF 170
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P+ + + ++ P LT W GL K VI S +
Sbjct: 111 QRNVNVFKFII----PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLD 166
Query: 73 KARF 76
ARF
Sbjct: 167 SARF 170
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 240 TVSLGYDNIADFLSDGVVIGA-FHATMNGVLTVAASGNGGPEPQTINN 286
+V GY N+ D+L+DG ++GA N + S + GP T+NN
Sbjct: 41 SVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNN 88
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 221 EQDTIEAFDDAIHDGVDIITVSLGYDNIADF-LSDGVVIGAFH-ATMNGVLTVAASGNGG 278
+ D + A++ G II +S G + DF +DG + A N VL VAA+GN G
Sbjct: 101 QLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG 158
Query: 279 PEPQTINNMAPWMLTVGA 296
+ + P +L VGA
Sbjct: 159 CDCLHVPAALPAVLAVGA 176
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 221 EQDTIEAFDDAIHDGVDIITVSLGYDNIADF-LSDGVVIGAFH-ATMNGVLTVAASGNGG 278
+ D + A++ G II +S G + DF +DG + A N VL VAA+GN G
Sbjct: 110 QLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG 167
Query: 279 PEPQTINNMAPWMLTVGA 296
+ + P +L VGA
Sbjct: 168 CDCLHVPAALPAVLAVGA 185
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 457 KPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDW 516
K ++APG I+ A P + GTSM+ P++ GI+ L+ ++
Sbjct: 265 KEGILAPGEEILGAQPCTEEPV------------RLTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 517 ----SPAAIKSAIMTTARATD 533
A+++A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 457 KPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDW 516
K ++APG I+ A P + GTSM+ P++ GI+ L+ ++
Sbjct: 265 KEGILAPGEEILGAQPCTEEPV------------RLTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 517 ----SPAAIKSAIMTTARATD 533
A+++A++ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 221 EQDTIEAFDDAIHDGVDIITVSLGYDNIADF-LSDGVVIGAFH-ATMNGVLTVAASGNGG 278
+ D + A++ G II +S G + DF +DG + A N VL VAA+GN G
Sbjct: 91 QLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNG 148
Query: 279 PEPQTINNMAPWMLTVGA 296
+ + P +L VGA
Sbjct: 149 CDCLHVPAALPAVLAVGA 166
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
Query: 457 KPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDW 516
K ++APG I+ A P + GTSM+ P++ GI+ L+ ++
Sbjct: 247 KEGILAPGEEILGAQPCTEEPV------------RLTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 517 ----SPAAIKSAIMTTARATD 533
A+++A++ TA D
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,216,968
Number of Sequences: 62578
Number of extensions: 963131
Number of successful extensions: 2485
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2244
Number of HSP's gapped (non-prelim): 200
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)