Query 044993
Match_columns 713
No_of_seqs 360 out of 2753
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:47:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 3.1E-52 6.6E-57 442.9 30.3 306 46-530 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.1E-49 4.6E-54 437.3 23.3 292 67-568 303-617 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 5.9E-49 1.3E-53 408.2 23.5 271 74-564 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 9.8E-49 2.1E-53 403.7 24.6 243 71-532 1-253 (255)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 2.8E-48 6.1E-53 420.1 29.0 315 69-564 1-346 (346)
6 cd07478 Peptidases_S8_CspA-lik 100.0 1.1E-48 2.4E-53 432.5 25.9 414 75-555 1-455 (455)
7 cd07497 Peptidases_S8_14 Pepti 100.0 1E-48 2.2E-53 412.5 24.2 289 77-529 1-311 (311)
8 cd07489 Peptidases_S8_5 Peptid 100.0 3E-47 6.5E-52 405.7 27.4 294 68-567 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 6.3E-46 1.4E-50 384.6 24.9 249 70-534 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 2.3E-45 4.9E-50 388.7 28.7 292 77-562 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 5.3E-45 1.2E-49 383.5 24.5 273 78-530 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 5.2E-45 1.1E-49 372.5 23.7 238 80-555 1-239 (239)
13 cd07493 Peptidases_S8_9 Peptid 100.0 3.3E-44 7.2E-49 372.7 24.7 247 79-530 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 5.5E-44 1.2E-48 371.5 24.3 247 77-530 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 1.2E-43 2.7E-48 380.4 26.9 223 157-532 182-412 (412)
16 cd07487 Peptidases_S8_1 Peptid 100.0 4.6E-43 1E-47 365.0 26.3 258 77-530 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.3E-42 2.9E-47 362.9 24.4 264 69-528 1-273 (273)
18 cd07484 Peptidases_S8_Thermita 100.0 5.6E-42 1.2E-46 356.0 26.1 242 67-532 18-259 (260)
19 cd07490 Peptidases_S8_6 Peptid 100.0 5.5E-42 1.2E-46 354.9 24.6 253 79-530 1-254 (254)
20 cd04847 Peptidases_S8_Subtilis 100.0 1.7E-42 3.6E-47 365.6 20.9 236 156-530 34-291 (291)
21 cd07496 Peptidases_S8_13 Pepti 100.0 1.4E-41 3E-46 357.5 24.9 207 155-528 66-285 (285)
22 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.2E-41 2.5E-46 352.5 23.8 233 70-531 17-255 (255)
23 cd07494 Peptidases_S8_10 Pepti 100.0 1.1E-41 2.4E-46 358.2 23.4 252 66-533 9-286 (298)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 1.5E-41 3.3E-46 359.1 24.3 279 73-530 2-293 (293)
25 cd07480 Peptidases_S8_12 Pepti 100.0 7.1E-41 1.5E-45 353.9 24.2 266 72-560 2-296 (297)
26 cd07498 Peptidases_S8_15 Pepti 100.0 6.3E-41 1.4E-45 344.3 22.8 241 80-528 1-242 (242)
27 cd04843 Peptidases_S8_11 Pepti 100.0 8.1E-41 1.8E-45 347.7 22.2 247 66-530 3-277 (277)
28 cd07477 Peptidases_S8_Subtilis 100.0 2.9E-40 6.3E-45 336.5 23.9 227 79-528 1-229 (229)
29 cd07473 Peptidases_S8_Subtilis 100.0 7.1E-40 1.5E-44 340.1 25.0 250 78-530 2-259 (259)
30 PF00082 Peptidase_S8: Subtila 100.0 8.5E-41 1.8E-45 351.3 17.0 275 81-564 1-282 (282)
31 cd07491 Peptidases_S8_7 Peptid 100.0 5.6E-40 1.2E-44 335.9 19.6 224 77-513 2-230 (247)
32 cd07492 Peptidases_S8_8 Peptid 100.0 5.3E-39 1.1E-43 325.6 23.2 221 79-530 1-222 (222)
33 cd04059 Peptidases_S8_Protein_ 100.0 7.2E-40 1.6E-44 347.0 17.6 251 65-530 26-297 (297)
34 cd07482 Peptidases_S8_Lantibio 100.0 5E-39 1.1E-43 340.1 22.6 208 155-528 48-294 (294)
35 cd04848 Peptidases_S8_Autotran 100.0 2.9E-38 6.4E-43 329.1 21.4 245 76-530 1-267 (267)
36 KOG4266 Subtilisin kexin isozy 100.0 7.4E-37 1.6E-41 322.5 23.7 306 27-564 113-465 (1033)
37 KOG1153 Subtilisin-related pro 100.0 3.1E-37 6.7E-42 317.8 16.7 287 15-531 145-462 (501)
38 KOG1114 Tripeptidyl peptidase 100.0 7.9E-34 1.7E-38 312.1 20.4 357 159-712 309-690 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 8.4E-33 1.8E-37 282.0 14.3 194 156-529 33-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 9.1E-31 2E-35 267.2 23.6 197 155-528 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 3.6E-23 7.9E-28 234.3 22.5 274 67-564 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 4.3E-19 9.4E-24 179.1 6.4 308 66-584 149-474 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 6.5E-17 1.4E-21 175.2 15.4 102 187-301 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.0 3.6E-09 7.8E-14 99.3 10.2 108 326-450 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 98.9 1.2E-08 2.6E-13 93.6 11.3 113 307-424 2-125 (126)
46 KOG3525 Subtilisin-like propro 98.5 7.8E-07 1.7E-11 97.7 11.4 157 67-280 22-187 (431)
47 PF06280 DUF1034: Fn3-like dom 98.4 1.8E-06 4E-11 77.3 10.3 89 617-707 2-112 (112)
48 COG4934 Predicted protease [Po 98.3 1.1E-05 2.4E-10 95.5 16.4 97 187-296 286-395 (1174)
49 cd04816 PA_SaNapH_like PA_SaNa 98.2 6.4E-06 1.4E-10 75.0 9.4 80 345-424 28-121 (122)
50 PF05922 Inhibitor_I9: Peptida 98.1 3.1E-06 6.8E-11 71.1 4.5 47 3-49 36-82 (82)
51 cd04818 PA_subtilisin_1 PA_sub 98.0 3.5E-05 7.6E-10 69.7 9.2 80 344-424 25-117 (118)
52 cd02130 PA_ScAPY_like PA_ScAPY 98.0 7.7E-05 1.7E-09 67.9 11.1 78 346-424 31-121 (122)
53 PF02225 PA: PA domain; Inter 97.9 9.6E-06 2.1E-10 71.0 4.4 70 346-415 19-101 (101)
54 cd02129 PA_hSPPL_like PA_hSPPL 97.9 4.9E-05 1.1E-09 68.2 8.7 83 327-418 20-115 (120)
55 cd02122 PA_GRAIL_like PA _GRAI 97.9 5.8E-05 1.3E-09 69.9 9.0 82 344-425 42-138 (138)
56 cd02127 PA_hPAP21_like PA_hPAP 97.9 8.8E-05 1.9E-09 66.8 9.9 80 345-425 20-116 (118)
57 cd02132 PA_GO-like PA_GO-like: 97.8 0.00011 2.5E-09 68.3 10.0 76 345-423 47-137 (139)
58 cd00538 PA PA: Protease-associ 97.8 6.9E-05 1.5E-09 68.4 7.8 79 345-423 29-124 (126)
59 cd02126 PA_EDEM3_like PA_EDEM3 97.7 0.00017 3.7E-09 65.9 9.1 77 346-423 27-124 (126)
60 cd02124 PA_PoS1_like PA_PoS1_l 97.7 0.00016 3.4E-09 66.3 8.6 80 344-424 39-128 (129)
61 cd02125 PA_VSR PA_VSR: Proteas 97.6 0.00026 5.6E-09 64.7 8.2 80 345-424 21-126 (127)
62 cd04819 PA_2 PA_2: Protease-as 97.5 0.00096 2.1E-08 61.1 10.6 84 326-421 22-123 (127)
63 cd02123 PA_C_RZF_like PA_C-RZF 97.4 0.00066 1.4E-08 64.3 9.0 76 345-420 49-142 (153)
64 cd04813 PA_1 PA_1: Protease-as 97.4 0.0005 1.1E-08 61.9 7.3 73 344-418 25-112 (117)
65 cd04817 PA_VapT_like PA_VapT_l 97.4 0.00063 1.4E-08 62.9 7.8 65 354-418 50-134 (139)
66 PF14874 PapD-like: Flagellar- 95.7 0.41 8.8E-06 41.7 13.9 80 623-709 20-100 (102)
67 cd04815 PA_M28_2 PA_M28_2: Pro 95.7 0.039 8.5E-07 51.0 7.4 70 355-424 34-133 (134)
68 cd02128 PA_TfR PA_TfR: Proteas 94.8 0.049 1.1E-06 52.7 5.3 62 356-417 51-155 (183)
69 PF10633 NPCBM_assoc: NPCBM-as 94.1 0.15 3.3E-06 42.2 6.3 56 623-678 5-62 (78)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 92.6 0.55 1.2E-05 44.1 8.0 81 328-414 21-131 (151)
71 cd04820 PA_M28_1_1 PA_M28_1_1: 92.5 0.23 5.1E-06 45.8 5.3 53 327-385 22-91 (137)
72 cd04814 PA_M28_1 PA_M28_1: Pro 91.6 0.36 7.9E-06 44.8 5.6 53 327-385 20-95 (142)
73 PF11614 FixG_C: IG-like fold 91.5 1.8 3.9E-05 38.8 9.9 54 624-678 32-86 (118)
74 cd02131 PA_hNAALADL2_like PA_h 89.4 0.42 9E-06 44.5 3.8 31 357-387 37-72 (153)
75 KOG2442 Uncharacterized conser 87.8 1.9 4.1E-05 47.2 8.0 73 356-428 91-178 (541)
76 cd02121 PA_GCPII_like PA_GCPII 87.8 0.63 1.4E-05 46.7 4.2 47 327-385 45-101 (220)
77 PF06030 DUF916: Bacterial pro 87.6 11 0.00023 34.1 11.7 69 623-697 27-120 (121)
78 KOG1114 Tripeptidyl peptidase 82.1 0.91 2E-05 53.2 2.6 24 74-97 77-100 (1304)
79 COG1470 Predicted membrane pro 78.3 16 0.00034 40.3 10.2 71 623-697 397-469 (513)
80 PF07718 Coatamer_beta_C: Coat 76.4 25 0.00055 32.4 9.5 68 623-696 69-138 (140)
81 PF00345 PapD_N: Pili and flag 73.0 33 0.00071 30.7 9.6 68 623-696 14-89 (122)
82 TIGR02745 ccoG_rdxA_fixG cytoc 71.6 20 0.00044 39.9 9.4 54 624-678 347-401 (434)
83 cd04821 PA_M28_1_2 PA_M28_1_2: 67.5 7.1 0.00015 37.0 4.1 33 353-385 42-98 (157)
84 COG1470 Predicted membrane pro 65.9 72 0.0016 35.4 11.6 70 623-697 284-360 (513)
85 KOG3920 Uncharacterized conser 62.9 8.7 0.00019 35.7 3.5 93 327-429 64-175 (193)
86 PF00635 Motile_Sperm: MSP (Ma 60.4 44 0.00094 29.0 7.7 53 623-678 18-71 (109)
87 PF00927 Transglut_C: Transglu 49.9 1E+02 0.0022 26.8 8.2 54 623-678 15-78 (107)
88 PF07705 CARDB: CARDB; InterP 47.6 67 0.0015 27.0 6.6 51 623-677 19-72 (101)
89 PF07610 DUF1573: Protein of u 46.0 72 0.0016 23.1 5.5 42 629-674 2-45 (45)
90 KOG4628 Predicted E3 ubiquitin 45.4 46 0.001 35.7 6.0 75 345-419 61-151 (348)
91 PRK15098 beta-D-glucoside gluc 45.4 58 0.0013 39.3 7.7 54 623-679 667-730 (765)
92 smart00635 BID_2 Bacterial Ig- 43.7 76 0.0016 26.1 6.1 39 651-698 4-42 (81)
93 PF02845 CUE: CUE domain; Int 38.3 33 0.00071 24.5 2.6 23 506-528 5-27 (42)
94 KOG2018 Predicted dinucleotide 37.7 42 0.00091 35.2 4.1 86 189-275 137-245 (430)
95 PF12690 BsuPI: Intracellular 34.4 97 0.0021 25.8 5.2 26 652-678 47-72 (82)
96 PF05753 TRAP_beta: Translocon 33.1 3.2E+02 0.0068 26.6 9.3 56 623-678 38-99 (181)
97 PF08260 Kinin: Insect kinin p 32.6 20 0.00044 16.2 0.4 6 442-447 3-8 (8)
98 PLN03080 Probable beta-xylosid 31.8 90 0.0019 37.8 6.4 52 624-676 685-744 (779)
99 PRK15019 CsdA-binding activato 31.8 45 0.00098 31.2 3.1 34 489-523 76-109 (147)
100 PF13940 Ldr_toxin: Toxin Ldr, 30.5 42 0.00091 22.7 1.8 13 497-509 14-26 (35)
101 TIGR03391 FeS_syn_CsdE cystein 30.3 50 0.0011 30.6 3.1 35 489-524 71-105 (138)
102 PF08821 CGGC: CGGC domain; I 30.2 2E+02 0.0043 25.4 6.7 46 189-246 30-76 (107)
103 PRK09296 cysteine desufuration 26.6 63 0.0014 29.9 3.1 34 489-523 66-99 (138)
104 smart00546 CUE Domain that may 26.0 97 0.0021 22.1 3.4 24 505-528 5-28 (43)
105 PF04255 DUF433: Protein of un 25.9 58 0.0013 24.9 2.3 39 488-526 10-54 (56)
106 PF02657 SufE: Fe-S metabolism 25.7 71 0.0015 29.0 3.2 35 489-524 57-91 (125)
107 COG2166 sufE Cysteine desulfur 25.2 65 0.0014 30.0 2.8 33 490-523 72-104 (144)
108 PF02601 Exonuc_VII_L: Exonucl 25.0 2E+02 0.0042 30.6 7.0 74 192-278 38-118 (319)
109 PF05506 DUF756: Domain of unk 24.0 4.3E+02 0.0092 22.0 8.8 47 623-674 18-65 (89)
110 TIGR00845 caca sodium/calcium 22.3 8.5E+02 0.018 30.1 12.0 63 611-676 404-474 (928)
111 smart00237 Calx_beta Domains i 20.1 5.2E+02 0.011 21.6 9.3 62 613-678 8-75 (90)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-52 Score=442.94 Aligned_cols=306 Identities=46% Similarity=0.760 Sum_probs=254.8
Q ss_pred cccCCCCCccccCCCcCCCCCCccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCc-ccccc
Q 044993 46 TKKLTTGAWNFLGLEKDNVIPSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYG-VECNR 124 (713)
Q Consensus 46 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~-~~~n~ 124 (713)
++|+++++++|+++...- ...+|..+++|+||+|||||||||++||+|++.+..+++..|++.|..+..+. ..||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 578899999999988431 11246679999999999999999999999999988999999999999888876 67999
Q ss_pred cceeeeecccchhhhhcCCCCCCCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeee
Q 044993 125 KLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVC 204 (713)
Q Consensus 125 ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~ 204 (713)
|+++.++|.+++.... + ...+.+..++.|..||||||||||||+...+....| ...+.+.||||+|+|+.+|++
T Consensus 78 ki~g~~~~~~~~~~~~--~---~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~-~~~~~~~GvAP~a~l~~~kv~ 151 (307)
T cd04852 78 KLIGARYFSDGYDAYG--G---FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGG-FAFGTASGVAPRARIAVYKVC 151 (307)
T ss_pred eEEEEEEcccchhhcc--C---cccccCCCCCccCCCCchhhhhhhcCCCcccccccc-cccccEEEECCCCeEEEEEEe
Confidence 9999999987654331 0 012334567788999999999999998765544444 555678999999999999999
Q ss_pred cCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCc
Q 044993 205 WYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTI 284 (713)
Q Consensus 205 ~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~ 284 (713)
+.. +.+..+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+...+.
T Consensus 152 ~~~---------~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~ 221 (307)
T cd04852 152 WPD---------GGCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTV 221 (307)
T ss_pred cCC---------CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcc
Confidence 874 26889999999999999999999999999832 45667888888999999999999999999887788
Q ss_pred cCCCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEE
Q 044993 285 NNMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRIL 364 (713)
Q Consensus 285 ~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 364 (713)
.+..||+++|||++
T Consensus 222 ~~~~~~vi~Vga~~------------------------------------------------------------------ 235 (307)
T cd04852 222 PNVAPWVTTVAAST------------------------------------------------------------------ 235 (307)
T ss_pred cCCCCCeEEEEecc------------------------------------------------------------------
Confidence 88899999999620
Q ss_pred EEEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcccccc
Q 044993 365 VCLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFS 444 (713)
Q Consensus 365 l~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 444 (713)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044993 445 SRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSA 524 (713)
Q Consensus 445 S~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 524 (713)
+||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++
T Consensus 236 -----------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~ 301 (307)
T cd04852 236 -----------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSA 301 (307)
T ss_pred -----------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 47899999999999987531 1112233458999999999999999999999999999999999999
Q ss_pred HHhccc
Q 044993 525 IMTTAR 530 (713)
Q Consensus 525 L~~TA~ 530 (713)
|++||+
T Consensus 302 L~~tA~ 307 (307)
T cd04852 302 LMTTAY 307 (307)
T ss_pred HHHhcC
Confidence 999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.1e-49 Score=437.29 Aligned_cols=292 Identities=20% Similarity=0.161 Sum_probs=209.6
Q ss_pred Cccccc--cCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccc--eeeeecccchhhhhcC
Q 044993 67 SNSTWE--KARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKL--IGIRHYNKGLISAATK 142 (713)
Q Consensus 67 ~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki--~g~~~~~~~~~~~~~~ 142 (713)
++.+|+ .+.+|+||+|||||||||++||+|.+.-... .....|.. .++...|..+ +.+++|.++
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDdD~nG~vdd~~G~nfVd~------- 370 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDDDNNGNVDDEYGANFVNN------- 370 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----ccccccCCcccccccccccCC-------
Confidence 345666 4568999999999999999999997531000 00000100 0000001100 112333221
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHH
Q 044993 143 RNPAFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQ 222 (713)
Q Consensus 143 ~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~ 222 (713)
..+|.|..||||||||||||.. .+..| +.||||+|+|+.+|++... +.+..+
T Consensus 371 ----------~~~P~D~~GHGTHVAGIIAA~g---nN~~G------i~GVAP~AkLi~vKVld~~---------G~G~~s 422 (639)
T PTZ00262 371 ----------DGGPMDDNYHGTHVSGIISAIG---NNNIG------IVGVDKRSKLIICKALDSH---------KLGRLG 422 (639)
T ss_pred ----------CCCCCCCCCcchHHHHHHhccc---cCCCc------eeeeecccccceEEEecCC---------CCccHH
Confidence 3356788999999999999974 23344 8899999999999999865 357889
Q ss_pred HHHHHHHHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCC--------------ccC--
Q 044993 223 DTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQT--------------INN-- 286 (713)
Q Consensus 223 ~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~-- 286 (713)
++++||+||++.|++|||||||+. .....+..++.+|.++|++||+||||+|+.... ++.
T Consensus 423 dI~~AI~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~ 498 (639)
T PTZ00262 423 DMFKCFDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPIL 498 (639)
T ss_pred HHHHHHHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhh
Confidence 999999999999999999999986 234567889999999999999999999853211 111
Q ss_pred --CCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEE
Q 044993 287 --MAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRIL 364 (713)
Q Consensus 287 --~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 364 (713)
..|++|+|||+..+..
T Consensus 499 s~~~~nVIaVGAv~~d~~-------------------------------------------------------------- 516 (639)
T PTZ00262 499 SKKLRNVITVSNLIKDKN-------------------------------------------------------------- 516 (639)
T ss_pred hccCCCEEEEeeccCCCC--------------------------------------------------------------
Confidence 2356777776432210
Q ss_pred EEEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcccccc
Q 044993 365 VCLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFS 444 (713)
Q Consensus 365 l~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 444 (713)
....++.||
T Consensus 517 -----------------------------------------------------------------------~~~s~s~~S 525 (639)
T PTZ00262 517 -----------------------------------------------------------------------NQYSLSPNS 525 (639)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 001234556
Q ss_pred CCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044993 445 SRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSA 524 (713)
Q Consensus 445 S~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 524 (713)
++|. .++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|++.||+++
T Consensus 526 nyg~-------~~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~i 585 (639)
T PTZ00262 526 FYSA-------KYCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRI 585 (639)
T ss_pred cCCC-------CcceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 6652 1349999999999998864 7999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCccccCCCCCCCCCccC-ccccCccCcCCCCee
Q 044993 525 IMTTARATDANNKPISEFNGKEATAFAYG-SGHVDPNSALDPGLV 568 (713)
Q Consensus 525 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G-~G~id~~~A~~~~lv 568 (713)
|+.||.++... +..+| .|+||+++|++..+-
T Consensus 586 L~~TA~~l~~~-------------~n~~~wgG~LDa~kAV~~Ai~ 617 (639)
T PTZ00262 586 LKESIVQLPSL-------------KNKVKWGGYLDIHHAVNLAIA 617 (639)
T ss_pred HHHhCccCCCC-------------CCccccCcEEcHHHHHHHHHh
Confidence 99999876321 12233 389999999986553
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5.9e-49 Score=408.25 Aligned_cols=271 Identities=25% Similarity=0.238 Sum_probs=201.6
Q ss_pred CCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCC
Q 044993 74 ARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKL 153 (713)
Q Consensus 74 ~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (713)
|++|+||+|+|||||||.+||++.+-.. .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 5799999999999999999996543111 111111111110 1
Q ss_pred CCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHH
Q 044993 154 KTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIH 233 (713)
Q Consensus 154 ~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~ 233 (713)
....|..+|||||||||+| |||+|+|+.+|+. ...+++++||+||++
T Consensus 42 ~~~~d~~gHGT~vAgii~G-------------------vAP~a~l~~~~~~--------------~~~~~i~~ai~~a~~ 88 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIHD-------------------IAPGAELAFHTAG--------------GGELDFAAAIRALAA 88 (275)
T ss_pred CCCCCCCchHHHHHHHHhc-------------------cCCCCEEEEEecC--------------CCHHHHHHHHHHHHH
Confidence 1234678999999999963 9999999998872 347889999999999
Q ss_pred cCCCeeEeecCCCCCCCCCcchHHHHHHHHhcC-CcEEEEecCCCCCCCC-CccCCCCccEEeccccCCceeEEEEEeCC
Q 044993 234 DGVDIITVSLGYDNIADFLSDGVVIGAFHATMN-GVLTVAASGNGGPEPQ-TINNMAPWMLTVGASTMDREFAGYITLGN 311 (713)
Q Consensus 234 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~g~ 311 (713)
.|++|||||||......+....+..++.++.++ |++||+||||+|+... ......|++|+|||++.......+...+
T Consensus 89 ~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~- 167 (275)
T cd05562 89 AGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA- 167 (275)
T ss_pred cCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-
Confidence 999999999998632222345688889988887 9999999999997432 2244679999999976543110000000
Q ss_pred ceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcc
Q 044993 312 NKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTF 391 (713)
Q Consensus 312 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~ 391 (713)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCc-EEee
Q 044993 392 SASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVN-IVAA 470 (713)
Q Consensus 392 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~-I~sa 470 (713)
........+.|+++||+. ++++||||+|||.. +.+.
T Consensus 168 -----------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~ 204 (275)
T cd05562 168 -----------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVD 204 (275)
T ss_pred -----------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCC
Confidence 000012345688899987 78999999999753 3444
Q ss_pred ecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCC
Q 044993 471 YTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAF 550 (713)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 550 (713)
... +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.. +.++.
T Consensus 205 ~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~ 260 (275)
T cd05562 205 GDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDN 260 (275)
T ss_pred CcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCC
Confidence 333 278999999999999999999999999999999999999999988742 23567
Q ss_pred ccCccccCccCcCC
Q 044993 551 AYGSGHVDPNSALD 564 (713)
Q Consensus 551 ~~G~G~id~~~A~~ 564 (713)
.||||+||+.+|++
T Consensus 261 ~~G~G~vda~~Av~ 274 (275)
T cd05562 261 ASGSGLVDADRAVA 274 (275)
T ss_pred CcCcCcccHHHHhh
Confidence 89999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=9.8e-49 Score=403.68 Aligned_cols=243 Identities=27% Similarity=0.405 Sum_probs=198.5
Q ss_pred cccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCC
Q 044993 71 WEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIP 150 (713)
Q Consensus 71 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 150 (713)
|+++++|+||+|||||||||.+||+|.+. +...+|.+
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 88999999999999999999999999631 00111111
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHH
Q 044993 151 PKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDD 230 (713)
Q Consensus 151 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~ 230 (713)
.....|..||||||||||+|+.. ...||||+|+|+.+|++.+. +....+.++++|++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~a~l~~~~v~~~~---------~~~~~~~~~~a~~~ 94 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE------------QCLGFAPDAEIYIFRVFTNN---------QVSYTSWFLDAFNY 94 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC------------CceeECCCCEEEEEEeecCC---------CCchHHHHHHHHHh
Confidence 11334678999999999999731 26789999999999999876 24667889999999
Q ss_pred HHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccC--CCCccEEeccccCCceeEEEEE
Q 044993 231 AIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINN--MAPWMLTVGASTMDREFAGYIT 308 (713)
Q Consensus 231 a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~--~ap~vitVgA~~~~~~~~~~~~ 308 (713)
|++.++||||||||.. .+.+.++.+++.++.++|++||+||||+|+...+... ..+++|+|||+..
T Consensus 95 a~~~~~~Vin~S~G~~---~~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~--------- 162 (255)
T cd07479 95 AILTKIDVLNLSIGGP---DFMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF--------- 162 (255)
T ss_pred hhhcCCCEEEeeccCC---CCCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc---------
Confidence 9999999999999986 2345677788888899999999999999986555443 4578999997532
Q ss_pred eCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccC
Q 044993 309 LGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGAS 388 (713)
Q Consensus 309 ~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~ 388 (713)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCC----CCCCCCCceeeCC
Q 044993 389 GTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRI----DPSIIKPDVIAPG 464 (713)
Q Consensus 389 g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~----~~~~~KPDI~APG 464 (713)
.+.++.||++|++.+ ..+++||||+|||
T Consensus 163 ------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG 194 (255)
T cd07479 163 ------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYG 194 (255)
T ss_pred ------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecC
Confidence 256788999996521 2678999999999
Q ss_pred CcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhccccc
Q 044993 465 VNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHP----DWSPAAIKSAIMTTARAT 532 (713)
Q Consensus 465 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~~sp~~ik~~L~~TA~~~ 532 (713)
.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 195 ~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 195 SGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred CCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999876542 788999999999999999999999998 799999999999999886
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=2.8e-48 Score=420.09 Aligned_cols=315 Identities=27% Similarity=0.339 Sum_probs=237.2
Q ss_pred cccccCC-CCCccEEEEeccccCCCCCCCCCCCCCCCCC-----CcccccccCCCCcccccccceeeeecccchhhhhcC
Q 044993 69 STWEKAR-FGEDVIIGGIDSGICPESESFSDEEMGPIPS-----KWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATK 142 (713)
Q Consensus 69 ~~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~-----~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~ 142 (713)
++|+++. +|+||+|+|||||||++||+|++....+... .+...+. ..+..+.+.+++.+++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAG--IGYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhccc--CCCCcccccCCCeeEcCCCCCCc----
Confidence 3788887 9999999999999999999998654332211 1112222 22224677888888888765211
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecC-CCCccCCCCCCCCCH
Q 044993 143 RNPAFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWY-SEDDHNAAHGNDCME 221 (713)
Q Consensus 143 ~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~-~~~~~~~~~gg~~~~ 221 (713)
.....+..+|||||||||+|......+. ..+.||||+|+|+.+|++.. .. +.+..
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~~~------~~~~GiAp~a~l~~~~v~~~~~~--------~~~~~ 130 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEEDNG------EGIKGVAPEAQLLAMKVFSNPEG--------GSTYD 130 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccccC------CceEEeCCCCeEEEEEeecCCCC--------CCCCH
Confidence 1124467899999999999985332112 24899999999999999974 21 36788
Q ss_pred HHHHHHHHHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCc----------------c
Q 044993 222 QDTIEAFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTI----------------N 285 (713)
Q Consensus 222 ~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~ 285 (713)
..++++++++++.|++|||||||...........+..++.++.++|++||+||||+|...... .
T Consensus 131 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p 210 (346)
T cd07475 131 DAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSP 210 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCC
Confidence 899999999999999999999999843334456788889999999999999999998543211 1
Q ss_pred CCCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEE
Q 044993 286 NMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILV 365 (713)
Q Consensus 286 ~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 365 (713)
...+++|+||+....
T Consensus 211 ~~~~~~i~Vga~~~~----------------------------------------------------------------- 225 (346)
T cd07475 211 ATADDVLTVASANKK----------------------------------------------------------------- 225 (346)
T ss_pred ccCCCceEEeecccc-----------------------------------------------------------------
Confidence 124566666654210
Q ss_pred EEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccC
Q 044993 366 CLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSS 445 (713)
Q Consensus 366 ~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 445 (713)
........++.||+
T Consensus 226 ------------------------------------------------------------------~~~~~~~~~~~~S~ 239 (346)
T cd07475 226 ------------------------------------------------------------------VPNPNGGQMSGFSS 239 (346)
T ss_pred ------------------------------------------------------------------cCCCCCCccCCCcC
Confidence 00112467889999
Q ss_pred CCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHH-
Q 044993 446 RGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTV----HPDWSPAA- 520 (713)
Q Consensus 446 ~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~- 520 (713)
|||+. ++++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 240 ~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~ 304 (346)
T cd07475 240 WGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEEL 304 (346)
T ss_pred CCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 99998 8999999999999999987763 7889999999999999999999998 78999876
Q ss_pred ---HHHHHHhcccccCCCCCccccCCCCCCCCCccCccccCccCcCC
Q 044993 521 ---IKSAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564 (713)
Q Consensus 521 ---ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 564 (713)
||++|++||.+.... ...+..+.+.++|+|+||+.+||+
T Consensus 305 ~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 305 VDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 122456678899999999999985
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.1e-48 Score=432.49 Aligned_cols=414 Identities=24% Similarity=0.224 Sum_probs=242.9
Q ss_pred CCCCccEEEEeccccCCCCCCCCC-CCCCCCCCCcccccccCCCCcccccccceeeeeccc-chhhhhcCCCCCCCCCCC
Q 044993 75 RFGEDVIIGGIDSGICPESESFSD-EEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNK-GLISAATKRNPAFDIPPK 152 (713)
Q Consensus 75 ~~G~Gv~VgVIDtGid~~Hp~f~d-~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (713)
++|+||+|||||||||+.||+|++ ++.+++...|++....+..- ....+...+.+ ..+.. +....+.+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~~~-----~~~~~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIINAA-----LASDNPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHHHH-----HhcCCccc
Confidence 479999999999999999999986 46778899999877643311 11111212211 00000 11112233
Q ss_pred CCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCC-CCCCCCHHHHHHHHHHH
Q 044993 153 LKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAA-HGNDCMEQDTIEAFDDA 231 (713)
Q Consensus 153 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~-~gg~~~~~~i~~ai~~a 231 (713)
.....|..||||||||||||+...+ ..+.||||+|+|+++|++.........+ .-..+...++++||+++
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~~---------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~ 141 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDNN---------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYL 141 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCCC---------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHH
Confidence 4556789999999999999985321 2378899999999999998652100000 00026788999999999
Q ss_pred HHc-----CCCeeEeecCCCCCCCCCcchHHHHHHHHhcC-CcEEEEecCCCCCCCCCccCC-C-----C-ccEEecccc
Q 044993 232 IHD-----GVDIITVSLGYDNIADFLSDGVVIGAFHATMN-GVLTVAASGNGGPEPQTINNM-A-----P-WMLTVGAST 298 (713)
Q Consensus 232 ~~~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~-a-----p-~vitVgA~~ 298 (713)
++. .++|||||||...+.+...+++++++..+..+ |++||+||||+|......... . . --+.|+.
T Consensus 142 ~~~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~-- 219 (455)
T cd07478 142 YDKALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE-- 219 (455)
T ss_pred HHHHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--
Confidence 874 36799999999866777888999999988866 999999999999643222211 0 0 0122332
Q ss_pred CCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcC-------------CCCCCCCCCCCcccccCeEEE
Q 044993 299 MDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATD-------------KDASCKPGTLDRKKVQGRILV 365 (713)
Q Consensus 299 ~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~-------------~~~~c~~~~~~~~~~~gkivl 365 (713)
.+..+..++.... ...-.+.|+.+........+. ....|.... .+....|.-.+
T Consensus 220 ~~~~~~~eiW~~~------------~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i 286 (455)
T cd07478 220 GEKGFNLEIWGDF------------PDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLI 286 (455)
T ss_pred CCcceEEEEecCC------------CCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEE
Confidence 1111111111100 000011111111100000000 000000000 01111111111
Q ss_pred EEechhhHHHhhcCceEEEEccCC-cccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeec----ceeccccC-CCc
Q 044993 366 CLHEEKGYEAAKKGAVAMITGASG-TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDA----QTEFAIEP-SPA 439 (713)
Q Consensus 366 ~~~~~k~~~~~~~Ga~g~i~~~~g-~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~----~~~~~~~~-~~~ 439 (713)
..+ .. -...|-+-+.+.... .--....++|...+..++. .++......++++... .++..... .+.
T Consensus 287 ~i~---~~-~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~ 358 (455)
T cd07478 287 FIR---FK-NIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNS 358 (455)
T ss_pred EEE---cc-CCCccceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCc
Confidence 111 11 122344444441111 0011122333332222221 1222222222222211 12222222 456
Q ss_pred cccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhC------
Q 044993 440 VASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVH------ 513 (713)
Q Consensus 440 ~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------ 513 (713)
++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 359 ~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~ 423 (455)
T cd07478 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGND 423 (455)
T ss_pred ccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCC
Confidence 99999999998 8999999999999999999864 89999999999999999999999985
Q ss_pred CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCccCcc
Q 044993 514 PDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSG 555 (713)
Q Consensus 514 p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 555 (713)
|.|++++||++|++||+++. +..+++++||||
T Consensus 424 p~~~~~~ik~~L~~tA~~~~----------~~~~pn~~~GyG 455 (455)
T cd07478 424 PYLYGEKIKTYLIRGARRRP----------GDEYPNPEWGYG 455 (455)
T ss_pred CCCCHHHHHHHHHHhCccCC----------CCCCCCCCCCCC
Confidence 55799999999999999874 235678999998
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-48 Score=412.49 Aligned_cols=289 Identities=27% Similarity=0.260 Sum_probs=191.5
Q ss_pred CCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCC
Q 044993 77 GEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTG 156 (713)
Q Consensus 77 G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (713)
|+||+|+|||||||++||+|.+... ..|.-. | ....++....++..+ ....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~------~--d~~~~~~~g~d~~~~----------------~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK------F--DYKAYLLPGMDKWGG----------------FYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc------c--CcCCCccCCcCCCCC----------------ccCCC
Confidence 8999999999999999999964210 001100 0 001112111111111 11346
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHH-------HHH
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIE-------AFD 229 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~-------ai~ 229 (713)
.|..||||||||||||......+.++......+.||||+|+|+.+|+|...+ .+....+.. +++
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---------~~~~~~~~~g~~~~~~~~~ 123 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---------VIYAWLWTAGFDPVDRKLS 123 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---------cchhhhhhhccchhhhhhh
Confidence 7889999999999999753222221101123489999999999999997541 233333333 334
Q ss_pred HH--HHcCCCeeEeecCCCCCCC----CCcchHHHHHHHH-hcCCcEEEEecCCCCCCCCCccC--CCCccEEeccccCC
Q 044993 230 DA--IHDGVDIITVSLGYDNIAD----FLSDGVVIGAFHA-TMNGVLTVAASGNGGPEPQTINN--MAPWMLTVGASTMD 300 (713)
Q Consensus 230 ~a--~~~gvdVIn~SlG~~~~~~----~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~~~~~--~ap~vitVgA~~~~ 300 (713)
|. .++++||||||||...... ...+..+..++.+ .++|+++|+||||+|+...++.. .++++|+|||++..
T Consensus 124 ~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~ 203 (311)
T cd07497 124 WIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNF 203 (311)
T ss_pred hhhccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCC
Confidence 33 3689999999999862110 1123344444433 38999999999999986555555 46899999997543
Q ss_pred ceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCc
Q 044993 301 REFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGA 380 (713)
Q Consensus 301 ~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga 380 (713)
...+. +.+.+
T Consensus 204 ~~~~~-----------------------~~~~~----------------------------------------------- 213 (311)
T cd07497 204 DYRPF-----------------------YLFGY----------------------------------------------- 213 (311)
T ss_pred cccch-----------------------hhhcc-----------------------------------------------
Confidence 21000 00000
Q ss_pred eEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCce
Q 044993 381 VAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDV 460 (713)
Q Consensus 381 ~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI 460 (713)
.....+.++.||||||+. ++++||||
T Consensus 214 ----------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv 239 (311)
T cd07497 214 ----------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDL 239 (311)
T ss_pred ----------------------------------------------------ccCCCCCccccccCCCCc--ccCCCCce
Confidence 001146789999999998 89999999
Q ss_pred eeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 044993 461 IAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHP------DWSPAAIKSAIMTTA 529 (713)
Q Consensus 461 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~sp~~ik~~L~~TA 529 (713)
+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 240 ~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 240 AAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999876532100 011223799999999999999999999999986 689999999999997
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-47 Score=405.74 Aligned_cols=294 Identities=28% Similarity=0.358 Sum_probs=230.4
Q ss_pred ccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccc-hhhhhcCCCCC
Q 044993 68 NSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKG-LISAATKRNPA 146 (713)
Q Consensus 68 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~-~~~~~~~~~~~ 146 (713)
+++|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.++|..+ +...
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~~------- 55 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDGT------- 55 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCcccccc-------
Confidence 5899999999999999999999999999975310 11123333444321 1100
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHH
Q 044993 147 FDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIE 226 (713)
Q Consensus 147 ~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ 226 (713)
....+...+.|..+|||||||||+|.... .| +.||||+|+|+.+|++... +....+.+++
T Consensus 56 -~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~~------~~GiAp~a~i~~~~v~~~~---------~~~~~~~~~~ 115 (312)
T cd07489 56 -NPPVPDDDPMDCQGHGTHVAGIIAANPNA----YG------FTGVAPEATLGAYRVFGCS---------GSTTEDTIIA 115 (312)
T ss_pred -cCCCCCCCCCCCCCcHHHHHHHHhcCCCC----Cc------eEEECCCCEEEEEEeecCC---------CCCCHHHHHH
Confidence 11122345667799999999999998422 34 8999999999999999855 2577888999
Q ss_pred HHHHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCC---CccCCCCccEEeccccCCcee
Q 044993 227 AFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQ---TINNMAPWMLTVGASTMDREF 303 (713)
Q Consensus 227 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~ 303 (713)
+|++|++++++|||||||.. ..+....+...+.++.++|+++|+||||+|.... ......+++|+||+.+
T Consensus 116 ai~~a~~~~~~iIn~S~g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----- 188 (312)
T cd07489 116 AFLRAYEDGADVITASLGGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----- 188 (312)
T ss_pred HHHHHHhcCCCEEEeCCCcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----
Confidence 99999999999999999987 3445577888889999999999999999986432 2233557888888631
Q ss_pred EEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEE
Q 044993 304 AGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAM 383 (713)
Q Consensus 304 ~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~ 383 (713)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeC
Q 044993 384 ITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAP 463 (713)
Q Consensus 384 i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~AP 463 (713)
+.||++||+. +.+.||||+||
T Consensus 189 ---------------------------------------------------------~~~s~~g~~~--~~~~kpdv~Ap 209 (312)
T cd07489 189 ---------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAP 209 (312)
T ss_pred ---------------------------------------------------------CCccCCCCCC--CCCcCccEEcC
Confidence 4689999998 78999999999
Q ss_pred CCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCccccC
Q 044993 464 GVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVH-PDWSPAAIKSAIMTTARATDANNKPISEF 542 (713)
Q Consensus 464 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 542 (713)
|.+++++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++......-.
T Consensus 210 G~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~-- 276 (312)
T cd07489 210 GGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA-- 276 (312)
T ss_pred CCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--
Confidence 9999999887421 68999999999999999999999999 999999999999999998753321100
Q ss_pred CCCCCCCCccCccccCccCcCCCCe
Q 044993 543 NGKEATAFAYGSGHVDPNSALDPGL 567 (713)
Q Consensus 543 ~~~~~~~~~~G~G~id~~~A~~~~l 567 (713)
...+++..++|||+||+.+|++..-
T Consensus 277 ~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 277 LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 0114677899999999999999543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=6.3e-46 Score=384.56 Aligned_cols=249 Identities=25% Similarity=0.309 Sum_probs=201.6
Q ss_pred ccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCC
Q 044993 70 TWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDI 149 (713)
Q Consensus 70 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 149 (713)
||..+++|+||+|||||+|||++||+|++..+.+ ...+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~-------------------------~~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP-------------------------LFTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc-------------------------ccCccc---------------
Confidence 7999999999999999999999999997531110 000000
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHH
Q 044993 150 PPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFD 229 (713)
Q Consensus 150 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~ 229 (713)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++.... ..+...++++||+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~--------~~~~~~~i~~ai~ 100 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDR--------RGCSQLDLARAIN 100 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCC--------CCCCHHHHHHHHH
Confidence 012334678999999999998631 1278899999999999997652 2455788999999
Q ss_pred HHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccCCCCccEEeccccCCceeEEEEEe
Q 044993 230 DAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITL 309 (713)
Q Consensus 230 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~ 309 (713)
+|++.|+||||||||...........+.+++.++.++|++||+||||+|..........|++|+|||+..
T Consensus 101 ~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------- 170 (267)
T cd07476 101 LALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------- 170 (267)
T ss_pred HHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------
Confidence 9999999999999998632233455688899999999999999999999766666667899999997532
Q ss_pred CCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCC
Q 044993 310 GNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASG 389 (713)
Q Consensus 310 g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g 389 (713)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEe
Q 044993 390 TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVA 469 (713)
Q Consensus 390 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~s 469 (713)
.+.++.||++|+.. .||||+|||.+|++
T Consensus 171 -----------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~ 198 (267)
T cd07476 171 -----------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILG 198 (267)
T ss_pred -----------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCcee
Confidence 13456799999754 38899999999999
Q ss_pred eecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhcccccCC
Q 044993 470 AYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD----WSPAAIKSAIMTTARATDA 534 (713)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----~sp~~ik~~L~~TA~~~~~ 534 (713)
+.+.. .|..++|||||||||||++|||+|++|. ++|++||++|++||.++..
T Consensus 199 ~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 199 AALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 88763 7899999999999999999999999887 9999999999999999853
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-45 Score=388.72 Aligned_cols=292 Identities=36% Similarity=0.485 Sum_probs=218.6
Q ss_pred CCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCC
Q 044993 77 GEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTG 156 (713)
Q Consensus 77 G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (713)
|+||+|||||+|||++||+|.+.. ..+.++...++|........ ..............
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPM--DTRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCcc--cccccccccccCCC
Confidence 899999999999999999997431 12345555555543211000 00000000011224
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGV 236 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gv 236 (713)
.|..+|||||||+|+|.... ..+ +.|+||+|+|+.+|++... +.+...+++++|+++++.++
T Consensus 59 ~~~~~HGT~vAgiiag~~~n---~~~------~~Giap~a~i~~~~~~~~~---------~~~~~~~~~~ai~~a~~~~~ 120 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN---VGT------IKGVAPKADLYAYKVLGPG---------GSGTTDVIIAAIEQAVDDGM 120 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc---cCc------eEeECCCCeEEEEEeecCC---------CCCCHHHHHHHHHHHHHcCC
Confidence 56899999999999997422 223 8899999999999999754 26788999999999999999
Q ss_pred CeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCc--cCCCCccEEeccccCCceeEEEEEeCCceE
Q 044993 237 DIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTI--NNMAPWMLTVGASTMDREFAGYITLGNNKR 314 (713)
Q Consensus 237 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~g~g~~ 314 (713)
+|||||||... ....+.+..++.++.++|+++|+||||+|...... ....+++|+|||+....
T Consensus 121 ~Iin~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~------------- 185 (295)
T cd07474 121 DVINLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD------------- 185 (295)
T ss_pred CEEEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-------------
Confidence 99999999872 23467888899999999999999999998765544 33568999999854110
Q ss_pred EeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCccccc
Q 044993 315 LRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSAS 394 (713)
Q Consensus 315 ~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~ 394 (713)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccC-CCCCCCCCCCCCCceeeCCCcEEeeecC
Q 044993 395 YGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSS-RGPNRIDPSIIKPDVIAPGVNIVAAYTS 473 (713)
Q Consensus 395 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS-~GPt~~~~~~~KPDI~APG~~I~sa~~~ 473 (713)
.........|++ +|++. ..++||||+|||.+|++++..
T Consensus 186 ---------------------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~ 224 (295)
T cd07474 186 ---------------------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPG 224 (295)
T ss_pred ---------------------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccC
Confidence 000123334444 45555 789999999999999999876
Q ss_pred CCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCccC
Q 044993 474 ERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYG 553 (713)
Q Consensus 474 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G 553 (713)
.. ..|..++|||||||+|||++|||+|++|+|++++||++|++||.+....+. ...++..+|
T Consensus 225 ~~-----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G 286 (295)
T cd07474 225 SG-----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQG 286 (295)
T ss_pred CC-----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccC
Confidence 31 278999999999999999999999999999999999999999998754331 123567999
Q ss_pred ccccCccCc
Q 044993 554 SGHVDPNSA 562 (713)
Q Consensus 554 ~G~id~~~A 562 (713)
+|+||+.+|
T Consensus 287 ~G~l~~~~A 295 (295)
T cd07474 287 AGRVDALRA 295 (295)
T ss_pred cceeccccC
Confidence 999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.3e-45 Score=383.46 Aligned_cols=273 Identities=23% Similarity=0.264 Sum_probs=190.9
Q ss_pred CccEEEEeccccCCCCCCCCCCCCC-CCCCCcccccccCCCCcccccccceeeeecccchhhhh----cCCCCC--CCCC
Q 044993 78 EDVIIGGIDSGICPESESFSDEEMG-PIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAA----TKRNPA--FDIP 150 (713)
Q Consensus 78 ~Gv~VgVIDtGid~~Hp~f~d~~~~-~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~----~~~~~~--~~~~ 150 (713)
|+|+|||||||||++||+|++.-.. +-....+|....+.+|. .-+.+++|...+.... ...++. ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~-----dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~ 75 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI-----DDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGN 75 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc-----ccccCeeccCCcccccccccCccccccccccc
Confidence 6899999999999999999764210 00000112222222221 0133444443211000 000000 0001
Q ss_pred CCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHH
Q 044993 151 PKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDD 230 (713)
Q Consensus 151 ~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~ 230 (713)
.+...+.+..+|||||||||++.. .+..| +.||||+|+|+.+|++... .....++++||++
T Consensus 76 ~~~~~~~~~~gHGT~VAGiIaa~~---~n~~g------~~GvAp~a~i~~~k~~~~g----------~~~~~~i~~Ai~~ 136 (291)
T cd07483 76 NDVNGPISDADHGTHVAGIIAAVR---DNGIG------IDGVADNVKIMPLRIVPNG----------DERDKDIANAIRY 136 (291)
T ss_pred cccCCCCCCCCcHHHHHHHHhCcC---CCCCc------eEEECCCCEEEEEEEecCC----------CcCHHHHHHHHHH
Confidence 123345578999999999999974 23344 8899999999999998643 4667889999999
Q ss_pred HHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCc-----------cCCCCccEEeccccC
Q 044993 231 AIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTI-----------NNMAPWMLTVGASTM 299 (713)
Q Consensus 231 a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-----------~~~ap~vitVgA~~~ 299 (713)
|++.|++|||||||... ......+..++..+.++|+++|+||||+|...... ....+++|+|||+..
T Consensus 137 a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~ 214 (291)
T cd07483 137 AVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK 214 (291)
T ss_pred HHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccc
Confidence 99999999999999762 12234577888889999999999999998532111 112356777776432
Q ss_pred CceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcC
Q 044993 300 DREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKG 379 (713)
Q Consensus 300 ~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~G 379 (713)
..
T Consensus 215 ~~------------------------------------------------------------------------------ 216 (291)
T cd07483 215 KY------------------------------------------------------------------------------ 216 (291)
T ss_pred cC------------------------------------------------------------------------------
Confidence 11
Q ss_pred ceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCc
Q 044993 380 AVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPD 459 (713)
Q Consensus 380 a~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPD 459 (713)
....++.||++|+. +||
T Consensus 217 --------------------------------------------------------~~~~~~~~Sn~G~~-------~vd 233 (291)
T cd07483 217 --------------------------------------------------------ENNLVANFSNYGKK-------NVD 233 (291)
T ss_pred --------------------------------------------------------CcccccccCCCCCC-------ceE
Confidence 01347789999974 359
Q ss_pred eeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 460 VIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 460 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
|.|||..|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 234 i~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 234 VFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999997764 7999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-45 Score=372.52 Aligned_cols=238 Identities=24% Similarity=0.319 Sum_probs=191.2
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCCC
Q 044993 80 VIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDL 159 (713)
Q Consensus 80 v~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (713)
|+|||||||||++||+|++. ++..+++. ...+.|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC-------------------CCCCCCC
Confidence 78999999999999999642 11111111 0134467
Q ss_pred CCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCee
Q 044993 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDII 239 (713)
Q Consensus 160 ~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdVI 239 (713)
.+|||||||||+|+... ..|+||+|+|+.+|++..... +..+...++++||+||++.|++||
T Consensus 36 ~~HGT~vAgiia~~~~~------------~~Gvap~a~i~~~~v~~~~~~------~~~~~~~~i~~ai~~a~~~g~~VI 97 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ------------RPGLLPGADLYGADVFGRAGG------GEGASALALARALDWLAEQGVRVV 97 (239)
T ss_pred CCCHHHHHHHHhCCCCC------------CcccCCCCEEEEEEEecCCCC------CCCcCHHHHHHHHHHHHHCCCCEE
Confidence 89999999999997321 167999999999999985410 124678899999999999999999
Q ss_pred EeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCC-CCccCCCCccEEeccccCCceeEEEEEeCCceEEeec
Q 044993 240 TVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEP-QTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGA 318 (713)
Q Consensus 240 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~ 318 (713)
|||||.. ....+..++.++.++|++||+||||+|+.. ...+...+++|+|++++.
T Consensus 98 n~S~g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------- 153 (239)
T cd05561 98 NISLAGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------- 153 (239)
T ss_pred EeCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-------------------
Confidence 9999975 235678888999999999999999999653 334455688999997432
Q ss_pred ccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccccCCcc
Q 044993 319 SLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGFL 398 (713)
Q Consensus 319 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~ 398 (713)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCC
Q 044993 399 PVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPT 478 (713)
Q Consensus 399 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 478 (713)
.+.++.||++|+.. ||.|||.+|+++.+..
T Consensus 154 --------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~---- 183 (239)
T cd05561 154 --------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG---- 183 (239)
T ss_pred --------------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC----
Confidence 24567899999876 9999999999977653
Q ss_pred CCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCccCcc
Q 044993 479 GYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYGSG 555 (713)
Q Consensus 479 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 555 (713)
.|..++|||||||||||++|||+|++| +++.|||++|++||+++.. +.++..||||
T Consensus 184 ---------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 184 ---------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred ---------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 799999999999999999999999999 9999999999999998743 3356789998
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-44 Score=372.67 Aligned_cols=247 Identities=31% Similarity=0.390 Sum_probs=194.8
Q ss_pred ccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCC
Q 044993 79 DVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRD 158 (713)
Q Consensus 79 Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 158 (713)
||+|||||||||++||+|..... ..+.++.+.++|.++. .....|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-------------------~~~~~i~~~~~~~~~~----------------~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-------------------FKNLRILGEYDFVDNS----------------NNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-------------------ccCCceeeeecCccCC----------------CCCCCC
Confidence 79999999999999999942100 2334677777775431 001356
Q ss_pred CCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCe
Q 044993 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDI 238 (713)
Q Consensus 159 ~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdV 238 (713)
..+|||||||||+|+.. +.+.||||+|+|+.+|+...... .......++.++++|.+.|++|
T Consensus 46 ~~~HGT~vagiia~~~~-----------~~~~GvAp~a~l~~~~~~~~~~~-------~~~~~~~~~~ai~~a~~~~v~V 107 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP-----------GVMVGTAPNASYYLARTEDVASE-------TPVEEDNWVAAAEWADSLGVDI 107 (261)
T ss_pred CCCchhhhheeeeeCCC-----------CCEEEeCCCCEEEEEEecccCCc-------ccccHHHHHHHHHHHHHcCCCE
Confidence 78999999999999731 23789999999999998764321 1345667899999999999999
Q ss_pred eEeecCCCCCCCC-----------CcchHHHHHHHHhcCCcEEEEecCCCCCCC---CCccCCCCccEEeccccCCceeE
Q 044993 239 ITVSLGYDNIADF-----------LSDGVVIGAFHATMNGVLTVAASGNGGPEP---QTINNMAPWMLTVGASTMDREFA 304 (713)
Q Consensus 239 In~SlG~~~~~~~-----------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~ap~vitVgA~~~~~~~~ 304 (713)
||||||....... ....+.+++..+.++|+++|+||||+|... ...+...+++|+|||...
T Consensus 108 In~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~----- 182 (261)
T cd07493 108 ISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA----- 182 (261)
T ss_pred EEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc-----
Confidence 9999998732111 113577788889999999999999999652 333445689999997431
Q ss_pred EEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEE
Q 044993 305 GYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMI 384 (713)
Q Consensus 305 ~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i 384 (713)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCC
Q 044993 385 TGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPG 464 (713)
Q Consensus 385 ~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG 464 (713)
.+.++.||++||+. ++++||||+|||
T Consensus 183 ----------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G 208 (261)
T cd07493 183 ----------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALG 208 (261)
T ss_pred ----------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecC
Confidence 24577899999987 899999999999
Q ss_pred CcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 465 VNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 465 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
..|++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 209 ~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 209 TGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999854442 7899999999999999999999999999999999999999984
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=5.5e-44 Score=371.54 Aligned_cols=247 Identities=28% Similarity=0.355 Sum_probs=193.6
Q ss_pred CCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCC
Q 044993 77 GEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTG 156 (713)
Q Consensus 77 G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (713)
|+||+|||||+|||++||+|.+. |++... ..+...+.+.+. ......+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d~--------------~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFDP--------------VGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCcccccccccC--------------CCCCCCC
Confidence 89999999999999999999753 111100 000000011110 0112345
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHH---
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIH--- 233 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~--- 233 (713)
.|..+|||||||||+|... .+...||||+|+|+.+|++... .+...+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~~----------~~~~~GvAp~a~i~~~~~~~~~----------~~~~~~~~~a~~~~~~~~~ 108 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDG----------DGQQIGVAPGARWIACRALDRN----------GGNDADYLRCAQWMLAPTD 108 (264)
T ss_pred CCCCCchhhhhhheeecCC----------CCCceEECCCCeEEEEEeecCC----------CCcHHHHHHHHHHHHhccc
Confidence 6788999999999998732 2224889999999999999865 5778899999999975
Q ss_pred ---------cCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCC---ccCCCCccEEeccccCCc
Q 044993 234 ---------DGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQT---INNMAPWMLTVGASTMDR 301 (713)
Q Consensus 234 ---------~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~ap~vitVgA~~~~~ 301 (713)
.|++|||||||.... ....+..++..+.++|++||+||||+|..... .....+++|+|||.+.
T Consensus 109 ~~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-- 183 (264)
T cd07481 109 SAGNPADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-- 183 (264)
T ss_pred ccccccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--
Confidence 789999999998821 24456677778889999999999999864332 3345689999997532
Q ss_pred eeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCce
Q 044993 302 EFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAV 381 (713)
Q Consensus 302 ~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~ 381 (713)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCcee
Q 044993 382 AMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVI 461 (713)
Q Consensus 382 g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~ 461 (713)
.+.++.||++||.. .+++||||+
T Consensus 184 -------------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ 206 (264)
T cd07481 184 -------------------------------------------------------NDVLADFSSRGPST--YGRIKPDIS 206 (264)
T ss_pred -------------------------------------------------------CCCCccccCCCCCC--CCCcCceEE
Confidence 24578899999988 799999999
Q ss_pred eCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 044993 462 APGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD--WSPAAIKSAIMTTAR 530 (713)
Q Consensus 462 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--~sp~~ik~~L~~TA~ 530 (713)
|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 207 ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 207 APGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999998773 7899999999999999999999999999 999999999999984
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.2e-43 Score=380.44 Aligned_cols=223 Identities=26% Similarity=0.307 Sum_probs=168.0
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGV 236 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gv 236 (713)
.|+.+|||||||||+|+... ...+.||||+|+|+.+|++.... +..+....+++||++|++.|+
T Consensus 182 ~d~~gHGThVAGIIAg~~~~---------~~~~~GVAP~A~I~svkv~d~~~-------gs~~t~~~l~~ai~~ai~~ga 245 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE---------EPERNGVAPGAQIVSIKIGDTRL-------GSMETGTALVRAMIAAIETKC 245 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC---------CCceEEecCCCeEEEEEeccCCC-------CCccchHHHHHHHHHHHHcCC
Confidence 36789999999999997421 12378999999999999986431 112345679999999999999
Q ss_pred CeeEeecCCCCCCCCCcchHHHHHHHH-hcCCcEEEEecCCCCCCCCCccCC---CCccEEeccccCCceeEEEEEeCCc
Q 044993 237 DIITVSLGYDNIADFLSDGVVIGAFHA-TMNGVLTVAASGNGGPEPQTINNM---APWMLTVGASTMDREFAGYITLGNN 312 (713)
Q Consensus 237 dVIn~SlG~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~~~~~~---ap~vitVgA~~~~~~~~~~~~~g~g 312 (713)
||||||||...... ....+.+++.++ .++|+++|+||||+|+...+++.+ .+++|+|||............+
T Consensus 246 dVIN~SlG~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~--- 321 (412)
T cd04857 246 DLINMSYGEATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL--- 321 (412)
T ss_pred CEEEecCCcCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc---
Confidence 99999999873211 122344555544 478999999999999877776644 5789999986432210000000
Q ss_pred eEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCccc
Q 044993 313 KRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFS 392 (713)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~ 392 (713)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeec
Q 044993 393 ASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYT 472 (713)
Q Consensus 393 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~ 472 (713)
.....+.++.||||||+. ++++||||+|||+.|++.-.
T Consensus 322 ----------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~ 359 (412)
T cd04857 322 ----------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPN 359 (412)
T ss_pred ----------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEccc
Confidence 001135689999999998 99999999999999987532
Q ss_pred CCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccc
Q 044993 473 SERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKT----VHPDWSPAAIKSAIMTTARAT 532 (713)
Q Consensus 473 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~ 532 (713)
... ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 360 ~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 360 WTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 211 2789999999999999999999985 468999999999999999863
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-43 Score=365.01 Aligned_cols=258 Identities=30% Similarity=0.423 Sum_probs=203.0
Q ss_pred CCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCC
Q 044993 77 GEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTG 156 (713)
Q Consensus 77 G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (713)
|+||+|+|||+|||++||+|.+.. ...+.+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~--------------------------~~~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRI--------------------------IRFADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccc--------------------------cccccccccc--------------cCCCCC
Confidence 899999999999999999997531 1111111100 012344
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHc--
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHD-- 234 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~-- 234 (713)
.|..+|||||||+|+|..... .+.+.||||+|+|+.+|++... +.....++++||+++++.
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~---------~~~~~~~~~~ai~~~~~~~~ 103 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDS---------GSGSESDIIAGIDWVVENNE 103 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCC---------CCccHHHHHHHHHHHHhhcc
Confidence 567899999999999974221 2338999999999999999876 256778999999999998
Q ss_pred --CCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCC--CccCCCCccEEeccccCCceeEEEEEeC
Q 044993 235 --GVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQ--TINNMAPWMLTVGASTMDREFAGYITLG 310 (713)
Q Consensus 235 --gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~ap~vitVgA~~~~~~~~~~~~~g 310 (713)
+++|||||||.........+.+..++.++.++|++||+||||+|.... ......+++|+|||+..+..
T Consensus 104 ~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------- 175 (264)
T cd07487 104 KYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------- 175 (264)
T ss_pred ccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------
Confidence 999999999998433456778999999999999999999999997665 33445689999998653320
Q ss_pred CceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCc
Q 044993 311 NNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGT 390 (713)
Q Consensus 311 ~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~ 390 (713)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEee
Q 044993 391 FSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAA 470 (713)
Q Consensus 391 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa 470 (713)
....++.||++||+. ++++||||+|||.+|+++
T Consensus 176 ---------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~ 208 (264)
T cd07487 176 ---------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSC 208 (264)
T ss_pred ---------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEec
Confidence 013478899999998 899999999999999998
Q ss_pred ecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 471 YTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 209 RSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 654311 11122347899999999999999999999999999999999999999984
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.3e-42 Score=362.94 Aligned_cols=264 Identities=23% Similarity=0.269 Sum_probs=198.0
Q ss_pred cccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCC
Q 044993 69 STWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFD 148 (713)
Q Consensus 69 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 148 (713)
++|..+++|+||+|||||||||++||+|.+.... ..+ ..+...+......
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~-----------~~~~~~~~~~~~~------ 50 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY-----------DPAVNGYNFVPNV------ 50 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc-----------ccccCCccccccc------
Confidence 4799999999999999999999999999764100 000 0000110000000
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHH
Q 044993 149 IPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAF 228 (713)
Q Consensus 149 ~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai 228 (713)
........|..+|||||||||+|+........| .....|+||+|+|+.+|++... +.+..+.++++|
T Consensus 51 -~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~---i~~~~gvap~a~l~~~~v~~~~---------~~~~~~~~~~ai 117 (273)
T cd07485 51 -GDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGG---IAGAGGVAPGVKIMSIQIFAGR---------YYVGDDAVAAAI 117 (273)
T ss_pred -CCcCCCCCCCCCCHHHHHHHHHcccCCCcceec---cccccccCCCCEEEEEEEECCC---------CCccHHHHHHHH
Confidence 001223456789999999999997422111000 1124569999999999999865 257788999999
Q ss_pred HHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcC-------CcEEEEecCCCCCCCCCccCCCCccEEeccccCCc
Q 044993 229 DDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMN-------GVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDR 301 (713)
Q Consensus 229 ~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~ 301 (713)
++|++.|++|||||||... ...+...+..++..+.++ |++||+||||+|..........+++|+|++++.
T Consensus 118 ~~a~~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-- 194 (273)
T cd07485 118 VYAADNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-- 194 (273)
T ss_pred HHHHHcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--
Confidence 9999999999999999872 223455677888888877 999999999999776555667789999997532
Q ss_pred eeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCce
Q 044993 302 EFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAV 381 (713)
Q Consensus 302 ~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~ 381 (713)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCcee
Q 044993 382 AMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVI 461 (713)
Q Consensus 382 g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~ 461 (713)
.+.++.||++|+.. ||+
T Consensus 195 -------------------------------------------------------~~~~~~~S~~g~~~--------~i~ 211 (273)
T cd07485 195 -------------------------------------------------------NDNKASFSNYGRWV--------DIA 211 (273)
T ss_pred -------------------------------------------------------CCCcCccccCCCce--------EEE
Confidence 24567899999877 999
Q ss_pred eCCC-cEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 044993 462 APGV-NIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD-WSPAAIKSAIMTT 528 (713)
Q Consensus 462 APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~sp~~ik~~L~~T 528 (713)
|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|+ |+|.|||++|++|
T Consensus 212 apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 212 APGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999 89888765311 11237899999999999999999999999999 9999999999986
No 18
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5.6e-42 Score=355.98 Aligned_cols=242 Identities=28% Similarity=0.355 Sum_probs=201.9
Q ss_pred CccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCC
Q 044993 67 SNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPA 146 (713)
Q Consensus 67 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 146 (713)
+..+|..+ +|+||+|+|||+||+++||+|... ++...+++.++
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-----------
Confidence 45899988 999999999999999999998421 23333333322
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHH
Q 044993 147 FDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIE 226 (713)
Q Consensus 147 ~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ 226 (713)
...+.|..+|||||||||++... +..+ +.|+||+|+|+.+|++... +.+...++++
T Consensus 61 ------~~~~~d~~~HGT~vagii~~~~~---~~~~------~~Giap~a~l~~~~v~~~~---------~~~~~~~~~~ 116 (260)
T cd07484 61 ------DSDAMDDNGHGTHVAGIIAAATN---NGTG------VAGVAPKAKIMPVKVLDAN---------GSGSLADIAN 116 (260)
T ss_pred ------CCCCCCCCCcHHHHHHHHhCccC---CCCc------eEeECCCCEEEEEEEECCC---------CCcCHHHHHH
Confidence 12345678999999999998742 2223 7899999999999999865 2577889999
Q ss_pred HHHHHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccCCCCccEEeccccCCceeEEE
Q 044993 227 AFDDAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGY 306 (713)
Q Consensus 227 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~ 306 (713)
+|+++++.|++|||||||.. .....+.+++..+.++|++||+||||+|..........+++|+||+.+.
T Consensus 117 ai~~a~~~~~~iin~S~g~~----~~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------- 185 (260)
T cd07484 117 GIRYAADKGAKVINLSLGGG----LGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------- 185 (260)
T ss_pred HHHHHHHCCCeEEEecCCCC----CCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------
Confidence 99999999999999999988 2456688888888999999999999999877677778899999997532
Q ss_pred EEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEc
Q 044993 307 ITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITG 386 (713)
Q Consensus 307 ~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~ 386 (713)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCc
Q 044993 387 ASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVN 466 (713)
Q Consensus 387 ~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~ 466 (713)
.+..+.||++|+.. |++|||..
T Consensus 186 --------------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~ 207 (260)
T cd07484 186 --------------------------------------------------DDKRASFSNYGKWV--------DVSAPGGG 207 (260)
T ss_pred --------------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCC
Confidence 24467889999876 99999999
Q ss_pred EEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 044993 467 IVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARAT 532 (713)
Q Consensus 467 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 532 (713)
|++..+.. .|..++|||||||+|||++|||++++| |++.+||++|++||+++
T Consensus 208 i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 208 ILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99987663 789999999999999999999999999 99999999999999875
No 19
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-42 Score=354.87 Aligned_cols=253 Identities=28% Similarity=0.337 Sum_probs=187.6
Q ss_pred ccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCC
Q 044993 79 DVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRD 158 (713)
Q Consensus 79 Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 158 (713)
||+|||||+|||++||+|.+. +.....|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999642 22222222110 001224456
Q ss_pred CCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCe
Q 044993 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDI 238 (713)
Q Consensus 159 ~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdV 238 (713)
..+|||||||||+|+.. ++...||||+|+|+.+|++... .+..++++++|+++++.+++|
T Consensus 42 ~~~HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~----------~~~~~~~~~ai~~a~~~~~~V 101 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG----------GGSLSQIIAGMEWAVEKDADV 101 (254)
T ss_pred CCCcHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC----------CCcHHHHHHHHHHHHhCCCCE
Confidence 78999999999999742 2336799999999999999865 478899999999999999999
Q ss_pred eEeecCCCCCCCCCcchHHHHHHHHhc-CCcEEEEecCCCCCCCCCccCCCCccEEeccccCCceeEEEEEeCCceEEee
Q 044993 239 ITVSLGYDNIADFLSDGVVIGAFHATM-NGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRG 317 (713)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g 317 (713)
||||||.... ..+++..+++.+.+ +|++||+||||+|..........+++|+|||++.+........
T Consensus 102 in~S~g~~~~---~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~--------- 169 (254)
T cd07490 102 VSMSLGGTYY---SEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS--------- 169 (254)
T ss_pred EEECCCcCCC---CCcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC---------
Confidence 9999998821 15667777666664 6999999999999775555566799999998754321100000
Q ss_pred cccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccccCCc
Q 044993 318 ASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGF 397 (713)
Q Consensus 318 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~ 397 (713)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCC
Q 044993 398 LPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGP 477 (713)
Q Consensus 398 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 477 (713)
........++++|.. .....|||++|||.+|+++.....
T Consensus 170 --------------------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~-- 208 (254)
T cd07490 170 --------------------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGAN-- 208 (254)
T ss_pred --------------------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCCC--
Confidence 001122233344443 256789999999999998653211
Q ss_pred CCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 478 TGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 478 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
....|..++|||||||+|||++|||+|++|+|++.+||.+|++||+
T Consensus 209 -------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 -------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1237899999999999999999999999999999999999999984
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-42 Score=365.61 Aligned_cols=236 Identities=24% Similarity=0.244 Sum_probs=168.7
Q ss_pred CCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcC
Q 044993 156 GRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDG 235 (713)
Q Consensus 156 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~g 235 (713)
+.|..||||||||||++.... .....|+||+|+|+.+|++..... ..+....+++++||+++++.+
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~-----~~~~~~~~~~~~ai~~a~~~~ 99 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE-----NDPELYGDITLRAIRRAVIQN 99 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC-----CCccChHHHHHHHHHHHHHhC
Confidence 567899999999999975322 123678999999999999987510 001456788999999999853
Q ss_pred ---CCeeEeecCCCCCCCCC-cchHHHHHHH-HhcCCcEEEEecCCCCCCCCCc------------cCCCCccEEecccc
Q 044993 236 ---VDIITVSLGYDNIADFL-SDGVVIGAFH-ATMNGVLTVAASGNGGPEPQTI------------NNMAPWMLTVGAST 298 (713)
Q Consensus 236 ---vdVIn~SlG~~~~~~~~-~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~------------~~~ap~vitVgA~~ 298 (713)
++|||||||........ ...+..++++ +.++|++||+||||+|...... ...++++|+|||.+
T Consensus 100 ~~~~~ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~ 179 (291)
T cd04847 100 PDIVRVFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAIT 179 (291)
T ss_pred CCceeEEEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeee
Confidence 49999999998322111 1256666654 4589999999999999764332 22357999999976
Q ss_pred CCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhc
Q 044993 299 MDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKK 378 (713)
Q Consensus 299 ~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~ 378 (713)
.+.........
T Consensus 180 ~~~~~~~~s~~--------------------------------------------------------------------- 190 (291)
T cd04847 180 SDDDITDRARY--------------------------------------------------------------------- 190 (291)
T ss_pred cCccCCCcccc---------------------------------------------------------------------
Confidence 54311000000
Q ss_pred CceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCC
Q 044993 379 GAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKP 458 (713)
Q Consensus 379 Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KP 458 (713)
+.......+.||+|||.. ++.+||
T Consensus 191 ------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KP 214 (291)
T cd04847 191 ------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKP 214 (291)
T ss_pred ------------------------------------------------------cccccccCCCccccCCCC--CCCcCC
Confidence 000011233499999998 899999
Q ss_pred ceeeCCCcEEeeecCCCCCC-----CCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 459 DVIAPGVNIVAAYTSERGPT-----GYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 459 DI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
||+|||++|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 215 Dl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 215 DVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999988654211000 0001122348999999999999999999999999999999999999999984
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=357.53 Aligned_cols=207 Identities=28% Similarity=0.333 Sum_probs=166.6
Q ss_pred CCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHH--
Q 044993 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAI-- 232 (713)
Q Consensus 155 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~-- 232 (713)
...+..+|||||||||+|... +..| +.||||+|+|+.+|++... +...+++++|+++++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~---~~~~------~~GvAp~a~i~~~~v~~~~----------~~~~~~i~~a~~~a~~~ 126 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTN---NGVG------VAGVAWGARILPVRVLGKC----------GGTLSDIVDGMRWAAGL 126 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCC---CCCC------ceeecCCCeEEEEEEecCC----------CCcHHHHHHHHHHHhcc
Confidence 345678999999999999753 3444 7899999999999999865 347889999999998
Q ss_pred --------HcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCC-CCccCCCCccEEeccccCCcee
Q 044993 233 --------HDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEP-QTINNMAPWMLTVGASTMDREF 303 (713)
Q Consensus 233 --------~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~ 303 (713)
.++++|||||||... .....+..++..+.++|++||+||||+|... .......+++|+|||++.
T Consensus 127 ~~~~~~~~~~~~~Iin~S~G~~~---~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---- 199 (285)
T cd07496 127 PVPGVPVNPNPAKVINLSLGGDG---ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---- 199 (285)
T ss_pred CcCCCcccCCCCeEEEeCCCCCC---CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----
Confidence 467899999999872 1156788899999999999999999999754 344556789999997532
Q ss_pred EEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEE
Q 044993 304 AGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAM 383 (713)
Q Consensus 304 ~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~ 383 (713)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeC
Q 044993 384 ITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAP 463 (713)
Q Consensus 384 i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~AP 463 (713)
.+.++.||++||.. ||+||
T Consensus 200 -----------------------------------------------------~~~~~~~S~~g~~v--------di~ap 218 (285)
T cd07496 200 -----------------------------------------------------RGQRASYSNYGPAV--------DVSAP 218 (285)
T ss_pred -----------------------------------------------------CCCcccccCCCCCC--------CEEeC
Confidence 24578899999987 99999
Q ss_pred CCcEEeeecCCCCCC--CCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 044993 464 GVNIVAAYTSERGPT--GYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 464 G~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 528 (713)
|.+|.+......... ..........|..++|||||||+|||++|||+|++|+|++.+||++|++|
T Consensus 219 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 219 GGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999998876532110 00112223478999999999999999999999999999999999999986
No 22
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.2e-41 Score=352.48 Aligned_cols=233 Identities=30% Similarity=0.414 Sum_probs=193.3
Q ss_pred ccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCC
Q 044993 70 TWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDI 149 (713)
Q Consensus 70 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 149 (713)
.|..+++|+||+|+|||+||+++||+|.+. +...+.|.+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 777889999999999999999999999642 2222233211
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHH
Q 044993 150 PPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFD 229 (713)
Q Consensus 150 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~ 229 (713)
....|..+|||||||||+++ ..||||+|+|+.+|++... +....+.++++++
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~---------------~~GvAp~a~i~~~~i~~~~---------~~~~~~~~~~ai~ 108 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGK---------------TYGVAKKANLVAVKVLDCN---------GSGTLSGIIAGLE 108 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHcc---------------ccCcCCCCeEEEEEEeCCC---------CCcCHHHHHHHHH
Confidence 11456789999999999986 3579999999999999866 2567889999999
Q ss_pred HHHHc-----CCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCC-CCccCCCCccEEeccccCCcee
Q 044993 230 DAIHD-----GVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEP-QTINNMAPWMLTVGASTMDREF 303 (713)
Q Consensus 230 ~a~~~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~ 303 (713)
++++. +++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+|||.+.+
T Consensus 109 ~~~~~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--- 180 (255)
T cd04077 109 WVANDATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--- 180 (255)
T ss_pred HHHhcccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---
Confidence 99987 4899999999871 55678889999999999999999999654 3344567899999975422
Q ss_pred EEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEE
Q 044993 304 AGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAM 383 (713)
Q Consensus 304 ~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~ 383 (713)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeC
Q 044993 384 ITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAP 463 (713)
Q Consensus 384 i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~AP 463 (713)
+..+.||++||.. ||+||
T Consensus 181 ------------------------------------------------------~~~~~~S~~g~~~--------~i~ap 198 (255)
T cd04077 181 ------------------------------------------------------DARASFSNYGSCV--------DIFAP 198 (255)
T ss_pred ------------------------------------------------------CCccCcccCCCCC--------cEEeC
Confidence 3467899999987 99999
Q ss_pred CCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 044993 464 GVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARA 531 (713)
Q Consensus 464 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 531 (713)
|.+|+++..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 199 G~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 199 GVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999877421 278999999999999999999999999999999999999999964
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-41 Score=358.24 Aligned_cols=252 Identities=24% Similarity=0.322 Sum_probs=181.7
Q ss_pred CCccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCC
Q 044993 66 PSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNP 145 (713)
Q Consensus 66 ~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~ 145 (713)
.+..+|+.+++|+||+|+||||||+..|| |...++ .+ +. .+..+
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~--------------~~----~~~~~---------- 52 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV--------------RV----VLAPG---------- 52 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc--------------ee----ecCCC----------
Confidence 35699999999999999999999999998 643211 00 00 01000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHH
Q 044993 146 AFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTI 225 (713)
Q Consensus 146 ~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~ 225 (713)
......|+.|||||||+++. ||||+|+|+.+|++.. ..+.++
T Consensus 53 ------~~~~~~D~~gHGT~vag~i~-------------------GvAP~a~i~~vkv~~~-------------~~~~~~ 94 (298)
T cd07494 53 ------ATDPACDENGHGTGESANLF-------------------AIAPGAQFIGVKLGGP-------------DLVNSV 94 (298)
T ss_pred ------CCCCCCCCCCcchheeecee-------------------EeCCCCeEEEEEccCC-------------CcHHHH
Confidence 01234577899999998653 5999999999999753 456789
Q ss_pred HHHHHHHHcCCCeeEeecCCCCCCCC---------CcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccCCCCccEEecc
Q 044993 226 EAFDDAIHDGVDIITVSLGYDNIADF---------LSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMAPWMLTVGA 296 (713)
Q Consensus 226 ~ai~~a~~~gvdVIn~SlG~~~~~~~---------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA 296 (713)
+||++|++.+++|||||||....... ....+..++.+|.++|++||+||||++. .++...|++|+|||
T Consensus 95 ~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga 171 (298)
T cd07494 95 GAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGG 171 (298)
T ss_pred HHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEe
Confidence 99999999999999999998632111 1235778888899999999999999984 35667899999998
Q ss_pred ccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHh
Q 044993 297 STMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAA 376 (713)
Q Consensus 297 ~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~ 376 (713)
+..+..
T Consensus 172 ~~~~~~-------------------------------------------------------------------------- 177 (298)
T cd07494 172 VFVDED-------------------------------------------------------------------------- 177 (298)
T ss_pred EeccCC--------------------------------------------------------------------------
Confidence 643320
Q ss_pred hcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCC-CCCCCC
Q 044993 377 KKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPN-RIDPSI 455 (713)
Q Consensus 377 ~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt-~~~~~~ 455 (713)
......+++.|+. ...+++
T Consensus 178 ------------------------------------------------------------g~~~~~~~~~~~~s~~~~g~ 197 (298)
T cd07494 178 ------------------------------------------------------------GARRASSYASGFRSKIYPGR 197 (298)
T ss_pred ------------------------------------------------------------CcccccccccCcccccCCCC
Confidence 0000111111110 112577
Q ss_pred CCCce----------------eeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHH
Q 044993 456 IKPDV----------------IAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPA 519 (713)
Q Consensus 456 ~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~ 519 (713)
.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++
T Consensus 198 ~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~ 272 (298)
T cd07494 198 QVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPE 272 (298)
T ss_pred ccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 78887 4799988765532100 00112379999999999999999999999999999999
Q ss_pred HHHHHHHhcccccC
Q 044993 520 AIKSAIMTTARATD 533 (713)
Q Consensus 520 ~ik~~L~~TA~~~~ 533 (713)
+||.+|+.||+++.
T Consensus 273 ~v~~~l~~ta~~~~ 286 (298)
T cd07494 273 RARSLLNKTARDVT 286 (298)
T ss_pred HHHHHHHHhCcccC
Confidence 99999999998774
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.5e-41 Score=359.08 Aligned_cols=279 Identities=30% Similarity=0.340 Sum_probs=200.9
Q ss_pred cCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCC
Q 044993 73 KARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPK 152 (713)
Q Consensus 73 ~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (713)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~---~~~~~~~~~~~~~~------------------ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN---LFHRKIVRYDSLSD------------------ 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc---cCcccEEEeeccCC------------------
Confidence 57899999999999999999999976421 0000 12333433222211
Q ss_pred CCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHH
Q 044993 153 LKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAI 232 (713)
Q Consensus 153 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~ 232 (713)
...|..+|||||||||+|......... .+.|+||+|+|+.+|++.... ......++..+++++.
T Consensus 49 --~~~d~~~HGT~vAgiia~~~~~~~~~~------~~~GvAp~a~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 112 (293)
T cd04842 49 --TKDDVDGHGTHVAGIIAGKGNDSSSIS------LYKGVAPKAKLYFQDIGDTSG--------NLSSPPDLNKLFSPMY 112 (293)
T ss_pred --CCCCCCCCcchhheeeccCCcCCCccc------ccccccccCeEEEEEeeccCc--------cccCCccHHHHHHHHH
Confidence 112779999999999999753322111 378999999999999988652 1356677889999999
Q ss_pred HcCCCeeEeecCCCCCCCCCcchHHHHHHHHh-c-CCcEEEEecCCCCCCCC---CccCCCCccEEeccccCCceeEEEE
Q 044993 233 HDGVDIITVSLGYDNIADFLSDGVVIGAFHAT-M-NGVLTVAASGNGGPEPQ---TINNMAPWMLTVGASTMDREFAGYI 307 (713)
Q Consensus 233 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~ 307 (713)
+.+++|||||||..... .......++.++. + +|++||+||||+|.... ......+++|+|||++......
T Consensus 113 ~~~~~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~--- 187 (293)
T cd04842 113 DAGARISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN--- 187 (293)
T ss_pred HhCCEEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc---
Confidence 99999999999998221 1234455555544 3 79999999999996554 4445679999999976543110
Q ss_pred EeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEcc
Q 044993 308 TLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGA 387 (713)
Q Consensus 308 ~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~ 387 (713)
...|..
T Consensus 188 --------------------------------------~~~~~~------------------------------------ 193 (293)
T cd04842 188 --------------------------------------GEGGLG------------------------------------ 193 (293)
T ss_pred --------------------------------------cccccc------------------------------------
Confidence 000000
Q ss_pred CCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcE
Q 044993 388 SGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNI 467 (713)
Q Consensus 388 ~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I 467 (713)
.......++.||++||+. ++++||||+|||..|
T Consensus 194 ---------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i 226 (293)
T cd04842 194 ---------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGI 226 (293)
T ss_pred ---------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCe
Confidence 011136689999999988 899999999999999
Q ss_pred EeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 044993 468 VAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVH-----P---DWSPAAIKSAIMTTAR 530 (713)
Q Consensus 468 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~~sp~~ik~~L~~TA~ 530 (713)
+++..... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 227 ~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 227 LSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred EeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99975520 0111223478999999999999999999999985 4 6677799999999985
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-41 Score=353.94 Aligned_cols=266 Identities=26% Similarity=0.297 Sum_probs=184.5
Q ss_pred ccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCC
Q 044993 72 EKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPP 151 (713)
Q Consensus 72 ~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (713)
..+++|+||+|||||+|||++||+|.+. .+..++|.+.
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~~---------------- 39 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVGG---------------- 39 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCCC----------------
Confidence 3578999999999999999999999643 1111222211
Q ss_pred CCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHH
Q 044993 152 KLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDA 231 (713)
Q Consensus 152 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a 231 (713)
..+.|..+|||||||||+|+... +...||||+|+|+.+|++... +......+++||++|
T Consensus 40 --~~~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~---------~~~~~~~i~~ai~~a 98 (297)
T cd07480 40 --EDVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGD---------GGGGDGGILAGIQWA 98 (297)
T ss_pred --CCCCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCC---------CCCcHHHHHHHHHHH
Confidence 12456789999999999997422 235689999999999999865 256677799999999
Q ss_pred HHcCCCeeEeecCCCCC----CCCC-----cchHHHHHHHH---------------hcCCcEEEEecCCCCCCCCCccC-
Q 044993 232 IHDGVDIITVSLGYDNI----ADFL-----SDGVVIGAFHA---------------TMNGVLTVAASGNGGPEPQTINN- 286 (713)
Q Consensus 232 ~~~gvdVIn~SlG~~~~----~~~~-----~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~~- 286 (713)
++.|++|||||||.... ..+. ...+......+ .++|++||+||||+|........
T Consensus 99 ~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~ 178 (297)
T cd07480 99 VANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPV 178 (297)
T ss_pred HHcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCc
Confidence 99999999999998631 0111 11222233333 68999999999999854332211
Q ss_pred ----CCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCe
Q 044993 287 ----MAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGR 362 (713)
Q Consensus 287 ----~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 362 (713)
..+++++|++....
T Consensus 179 ~~~~~~~~~~~V~~V~~~-------------------------------------------------------------- 196 (297)
T cd07480 179 GNPAACPSAMGVAAVGAL-------------------------------------------------------------- 196 (297)
T ss_pred cCccccccccEEEEECCC--------------------------------------------------------------
Confidence 12344444432211
Q ss_pred EEEEEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcccc
Q 044993 363 ILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVAS 442 (713)
Q Consensus 363 ivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 442 (713)
.....
T Consensus 197 ---------------------------------------------------------------------------~~~~~ 201 (297)
T cd07480 197 ---------------------------------------------------------------------------GRTGN 201 (297)
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11122
Q ss_pred ccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHH
Q 044993 443 FSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIK 522 (713)
Q Consensus 443 fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik 522 (713)
|+++.+ ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|++++.+++
T Consensus 202 ~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~ 264 (297)
T cd07480 202 FSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALA 264 (297)
T ss_pred ccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHH
Confidence 333322 2345789999999999988764 89999999999999999999999999999998888
Q ss_pred HHHHhcccccCCCCCccccCCCCCCCCCccCccccCcc
Q 044993 523 SAIMTTARATDANNKPISEFNGKEATAFAYGSGHVDPN 560 (713)
Q Consensus 523 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~ 560 (713)
.+|+.......... .........+|+|++++.
T Consensus 265 ~~l~~~l~~~~~~~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 265 ALLQARLTAARTTQ------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHhhcccCC------CCCCCChhhcCCceeecC
Confidence 88874322210000 012345678899998875
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-41 Score=344.33 Aligned_cols=241 Identities=26% Similarity=0.362 Sum_probs=188.4
Q ss_pred cEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCCC
Q 044993 80 VIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDL 159 (713)
Q Consensus 80 v~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (713)
|+|||||+|||++||+|++. .+++..+.+... ...+.|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~~-----------------~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVSN-----------------NDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccCC-----------------CCCCCCC
Confidence 78999999999999999752 011111112111 1134567
Q ss_pred CCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCee
Q 044993 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDII 239 (713)
Q Consensus 160 ~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdVI 239 (713)
.+|||||||||+|+.. +..+ +.||||+|+|+.+|++... +.+...++.++++++++.+++||
T Consensus 40 ~~HGT~vAgiiag~~~---~~~~------~~Gvap~a~i~~~~~~~~~---------~~~~~~~~~~ai~~a~~~~~~Vi 101 (242)
T cd07498 40 DGHGTACAGVAAAVGN---NGLG------VAGVAPGAKLMPVRIADSL---------GYAYWSDIAQAITWAADNGADVI 101 (242)
T ss_pred CCCHHHHHHHHHhccC---CCce------eEeECCCCEEEEEEEECCC---------CCccHHHHHHHHHHHHHCCCeEE
Confidence 8999999999999742 1223 7899999999999999765 25678899999999999999999
Q ss_pred EeecCCCCCCCCCcchHHHHHHHHhc-CCcEEEEecCCCCCCCCCccCCCCccEEeccccCCceeEEEEEeCCceEEeec
Q 044993 240 TVSLGYDNIADFLSDGVVIGAFHATM-NGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRGA 318 (713)
Q Consensus 240 n~SlG~~~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~ 318 (713)
|||||...........+..++..+.. +|+++|+||||+|..........+++|+|||++.
T Consensus 102 n~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------- 162 (242)
T cd07498 102 SNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------- 162 (242)
T ss_pred EeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-------------------
Confidence 99999873333335567777788888 9999999999999766555667899999998542
Q ss_pred ccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccccCCcc
Q 044993 319 SLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGFL 398 (713)
Q Consensus 319 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~ 398 (713)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCC
Q 044993 399 PVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPT 478 (713)
Q Consensus 399 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 478 (713)
.+.++.||++||.. |++|||.+++........
T Consensus 163 --------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~-- 194 (242)
T cd07498 163 --------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS-- 194 (242)
T ss_pred --------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccc--
Confidence 24467899999987 999999999887544211
Q ss_pred CCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 044993 479 GYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 479 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 528 (713)
..+.....|..++|||||||+|||++|||+|++|+|++.+||++|+.|
T Consensus 195 --~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 --AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred --cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223478899999999999999999999999999999999999976
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.1e-41 Score=347.69 Aligned_cols=247 Identities=22% Similarity=0.243 Sum_probs=178.3
Q ss_pred CCccccccC-CCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCC
Q 044993 66 PSNSTWEKA-RFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRN 144 (713)
Q Consensus 66 ~~~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~ 144 (713)
.+.++|+.. ..|+||+|+|||+|||.+||+|.+.. +. +..+
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~--------------------------~~---~~~~--------- 44 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNG--------------------------IT---LISG--------- 44 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccc--------------------------cc---ccCC---------
Confidence 356899885 46999999999999999999996431 10 0000
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHH
Q 044993 145 PAFDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDT 224 (713)
Q Consensus 145 ~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i 224 (713)
..+.|..+|||||||||++. .+..| +.||||+|+|+.+|++. .+++
T Consensus 45 ---------~~~~d~~gHGT~VAGiIaa~----~n~~G------~~GvAp~a~l~~i~v~~---------------~~~~ 90 (277)
T cd04843 45 ---------LTDQADSDHGTAVLGIIVAK----DNGIG------VTGIAHGAQAAVVSSTR---------------VSNT 90 (277)
T ss_pred ---------CCCCCCCCCcchhheeeeee----cCCCc------eeeeccCCEEEEEEecC---------------CCCH
Confidence 01456789999999999996 23445 88999999999999974 1235
Q ss_pred HHHHHHHHH----cCCCeeEeecCCCCCCC-----CCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCcc----------
Q 044993 225 IEAFDDAIH----DGVDIITVSLGYDNIAD-----FLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTIN---------- 285 (713)
Q Consensus 225 ~~ai~~a~~----~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~---------- 285 (713)
+++|.+|++ .++.+||||||...... .....+..++.++.++|++||+||||++.......
T Consensus 91 ~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~ 170 (277)
T cd04843 91 ADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRF 170 (277)
T ss_pred HHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccC
Confidence 566666665 45667899999873111 12234566888888999999999999985421111
Q ss_pred ---CCCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCe
Q 044993 286 ---NMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGR 362 (713)
Q Consensus 286 ---~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 362 (713)
...|++|+|||++.+.
T Consensus 171 ~~~~~~~~vI~VgA~~~~~------------------------------------------------------------- 189 (277)
T cd04843 171 SPDFRDSGAIMVGAGSSTT------------------------------------------------------------- 189 (277)
T ss_pred CcCcCCCCeEEEEeccCCC-------------------------------------------------------------
Confidence 1135688888753211
Q ss_pred EEEEEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcccc
Q 044993 363 ILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVAS 442 (713)
Q Consensus 363 ivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 442 (713)
....+.
T Consensus 190 --------------------------------------------------------------------------~~~~~~ 195 (277)
T cd04843 190 --------------------------------------------------------------------------GHTRLA 195 (277)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 123788
Q ss_pred ccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHH----h-CCCCC
Q 044993 443 FSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKT----V-HPDWS 517 (713)
Q Consensus 443 fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s 517 (713)
||++||.. ||.|||++|+++....... ..+.....|..++|||||||||||++|||++ + +|+|+
T Consensus 196 fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt 264 (277)
T cd04843 196 FSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLT 264 (277)
T ss_pred ccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999977 9999999999998764211 0111122457899999999999999999975 3 49999
Q ss_pred HHHHHHHHHhccc
Q 044993 518 PAAIKSAIMTTAR 530 (713)
Q Consensus 518 p~~ik~~L~~TA~ 530 (713)
|.|||++|+.|+.
T Consensus 265 ~~~v~~~L~~t~~ 277 (277)
T cd04843 265 PIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999973
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.9e-40 Score=336.54 Aligned_cols=227 Identities=31% Similarity=0.419 Sum_probs=186.2
Q ss_pred ccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCC
Q 044993 79 DVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRD 158 (713)
Q Consensus 79 Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 158 (713)
||+|||||+||+++||+|.+. ++..++|.... .....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999642 22222232110 023456
Q ss_pred CCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCe
Q 044993 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDI 238 (713)
Q Consensus 159 ~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdV 238 (713)
..+|||||||||++.... ..+.|+||+|+|+.+|++... +.....+++++++++++.|++|
T Consensus 39 ~~~HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~---------~~~~~~~l~~ai~~a~~~~~~V 99 (229)
T cd07477 39 GNGHGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDD---------GSGTYSDIIAGIEWAIENGMDI 99 (229)
T ss_pred CCCCHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCC---------CCcCHHHHHHHHHHHHHCCCCE
Confidence 789999999999997321 137899999999999999866 2466789999999999999999
Q ss_pred eEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCc--cCCCCccEEeccccCCceeEEEEEeCCceEEe
Q 044993 239 ITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTI--NNMAPWMLTVGASTMDREFAGYITLGNNKRLR 316 (713)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~ 316 (713)
||||||.. .....+..++..+.++|+++|+||||++...... ....+++|+||+++.+
T Consensus 100 in~S~g~~----~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------- 159 (229)
T cd07477 100 INMSLGGP----SDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------- 159 (229)
T ss_pred EEECCccC----CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC----------------
Confidence 99999987 3345677788888999999999999999765554 5667899999985432
Q ss_pred ecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccccCC
Q 044993 317 GASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSASYG 396 (713)
Q Consensus 317 g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~ 396 (713)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCC
Q 044993 397 FLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERG 476 (713)
Q Consensus 397 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~ 476 (713)
+.++.||++|+.. |+.|||..|+++++..
T Consensus 160 -----------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-- 188 (229)
T cd07477 160 -----------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-- 188 (229)
T ss_pred -----------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC--
Confidence 3456799999866 9999999999998763
Q ss_pred CCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 044993 477 PTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 477 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 528 (713)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -----------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78899999999999999999999999999999999999986
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.1e-40 Score=340.07 Aligned_cols=250 Identities=29% Similarity=0.345 Sum_probs=189.6
Q ss_pred CccEEEEeccccCCCCCCCCCCCCCCCCCCccc---ccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCC
Q 044993 78 EDVIIGGIDSGICPESESFSDEEMGPIPSKWRG---TCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLK 154 (713)
Q Consensus 78 ~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g---~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (713)
+||+|||||||||++||+|.+. .|.. .+..+... ..+..+.. ..+|+.. ....
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~-----------~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDD--DGNGYVDD----IYGWNFV-----------NNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCccc--CCCCcccC----CCccccc-----------CCCC
Confidence 6899999999999999999863 2221 11111100 00000000 0011110 1234
Q ss_pred CCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHc
Q 044993 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHD 234 (713)
Q Consensus 155 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~ 234 (713)
++.|..+|||||||||+|.... ..+ +.|+||+|+|+.+|++... +.+...+++++|+++++.
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~---~~~------~~GvAp~a~l~~~~~~~~~---------~~~~~~~~~~a~~~a~~~ 119 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNN---GIG------IAGVAWNVKIMPLKFLGAD---------GSGTTSDAIKAIDYAVDM 119 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCC---CCc------eEEeCCCCEEEEEEEeCCC---------CCcCHHHHHHHHHHHHHC
Confidence 5567899999999999997422 222 6889999999999999866 258889999999999999
Q ss_pred CCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCC---CCccC--CCCccEEeccccCCceeEEEEEe
Q 044993 235 GVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEP---QTINN--MAPWMLTVGASTMDREFAGYITL 309 (713)
Q Consensus 235 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~ap~vitVgA~~~~~~~~~~~~~ 309 (713)
+++|||+|||.. .....+..++.++.++|+++|+||||+|... ..... ..+++|+||+.+.
T Consensus 120 ~~~vin~S~G~~----~~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------- 185 (259)
T cd07473 120 GAKIINNSWGGG----GPSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------- 185 (259)
T ss_pred CCeEEEeCCCCC----CCCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------
Confidence 999999999988 2356788889999999999999999998652 12222 3478999987532
Q ss_pred CCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCC
Q 044993 310 GNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASG 389 (713)
Q Consensus 310 g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g 389 (713)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEe
Q 044993 390 TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVA 469 (713)
Q Consensus 390 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~s 469 (713)
.+.++.||++||. +||+.|||..+++
T Consensus 186 -----------------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~ 211 (259)
T cd07473 186 -----------------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILS 211 (259)
T ss_pred -----------------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEe
Confidence 2445669999985 4599999999999
Q ss_pred eecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 470 AYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
..+.. .|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 212 ~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 212 TSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 66553 7899999999999999999999999999999999999999984
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=8.5e-41 Score=351.32 Aligned_cols=275 Identities=35% Similarity=0.477 Sum_probs=207.8
Q ss_pred EEEEeccccCCCCCCCC-CCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCCC
Q 044993 81 IIGGIDSGICPESESFS-DEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDL 159 (713)
Q Consensus 81 ~VgVIDtGid~~Hp~f~-d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (713)
+|||||||||++||+|. .. ....++.+.+.|.++. .......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGN--------------PNPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTB--------------STTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCC--------------CCcCccccC
Confidence 69999999999999996 21 1112333445554331 012344667
Q ss_pred CCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHH-HcCCCe
Q 044993 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAI-HDGVDI 238 (713)
Q Consensus 160 ~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~-~~gvdV 238 (713)
.+|||||||||+|.. . .+..+ +.|+||+|+|+.+|++... ......++++|++++ +.+++|
T Consensus 46 ~~HGT~va~ii~~~~-~-~~~~~------~~Gva~~a~l~~~~i~~~~----------~~~~~~~~~ai~~~~~~~~~~V 107 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NNGPG------INGVAPNAKLYSYKIFDNS----------GGTSSDLIEAIEYAVKNDGVDV 107 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SSSSS------ETCSSTTSEEEEEECSSTT----------SEEHHHHHHHHHHHHHHTTSSE
T ss_pred CCccchhhhhccccc-c-ccccc------ccccccccccccccccccc----------ccccccccchhhhhhhccCCcc
Confidence 899999999999985 3 33333 6889999999999997765 377888999999999 899999
Q ss_pred eEeecCCCC--CCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCC-ccC--CCCccEEeccccCCceeEEEEEeCCce
Q 044993 239 ITVSLGYDN--IADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQT-INN--MAPWMLTVGASTMDREFAGYITLGNNK 313 (713)
Q Consensus 239 In~SlG~~~--~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~--~ap~vitVgA~~~~~~~~~~~~~g~g~ 313 (713)
||||||... ........+..++..+.++|+++|+||||+|+.... +.. ..+++|+||+...
T Consensus 108 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~-------------- 173 (282)
T PF00082_consen 108 INLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN-------------- 173 (282)
T ss_dssp EEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET--------------
T ss_pred ccccccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc--------------
Confidence 999999831 111123345566778889999999999999876543 333 3478899997532
Q ss_pred EEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccc
Q 044993 314 RLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSA 393 (713)
Q Consensus 314 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~ 393 (713)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecC
Q 044993 394 SYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTS 473 (713)
Q Consensus 394 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~ 473 (713)
.+.++.||++|+.. .++++||||+|||.+|+++++.
T Consensus 174 -------------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~ 209 (282)
T PF00082_consen 174 -------------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPG 209 (282)
T ss_dssp -------------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETT
T ss_pred -------------------------------------------cccccccccccccc-cccccccccccccccccccccc
Confidence 13568899997543 2799999999999999988876
Q ss_pred CCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCccC
Q 044993 474 ERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATAFAYG 553 (713)
Q Consensus 474 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G 553 (713)
... ..|..++|||||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||
T Consensus 210 ~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G 271 (282)
T PF00082_consen 210 SDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYG 271 (282)
T ss_dssp TES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHT
T ss_pred ccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCcc
Confidence 421 25889999999999999999999999999999999999999999886211 244677889
Q ss_pred ccccCccCcCC
Q 044993 554 SGHVDPNSALD 564 (713)
Q Consensus 554 ~G~id~~~A~~ 564 (713)
||+||+.+||+
T Consensus 272 ~G~in~~~a~~ 282 (282)
T PF00082_consen 272 WGLINAEKALN 282 (282)
T ss_dssp TSBE-HHHHHH
T ss_pred CChhCHHHHhC
Confidence 99999999874
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-40 Score=335.94 Aligned_cols=224 Identities=21% Similarity=0.213 Sum_probs=167.5
Q ss_pred CCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCC
Q 044993 77 GEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTG 156 (713)
Q Consensus 77 G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (713)
+++|+|||||||||++||+|.+. ++..++|....... .......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----------~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----------NKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----------ccCCCCC
Confidence 78999999999999999999642 22223333210000 0001122
Q ss_pred CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 044993 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGV 236 (713)
Q Consensus 157 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gv 236 (713)
.|..||||||||||+| +||+|+|+.+|++........ ...+....+++||+||+++|+
T Consensus 46 ~d~~gHGT~vAgiI~g-------------------vap~a~i~~~kv~~~~~~~~~---~~~~~~~~i~~Ai~~Ai~~ga 103 (247)
T cd07491 46 VSADGHGTAMARMICR-------------------ICPSAKLYVIKLEDRPSPDSN---KRSITPQSAAKAIEAAVEKKV 103 (247)
T ss_pred CCCCCcHHHHHHHHHH-------------------HCCCCeEEEEEecccCCCCCc---ccccCHHHHHHHHHHHHHCCC
Confidence 4678999999999974 899999999999976521000 014567889999999999999
Q ss_pred CeeEeecCCCCCC--CCCcchHHHHHHHHhcCCcEEEEecCCCCCCCC-Ccc--CCCCccEEeccccCCceeEEEEEeCC
Q 044993 237 DIITVSLGYDNIA--DFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQ-TIN--NMAPWMLTVGASTMDREFAGYITLGN 311 (713)
Q Consensus 237 dVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~--~~ap~vitVgA~~~~~~~~~~~~~g~ 311 (713)
||||||||..... ......+.+++.+|.++|++||+||||+|.... .+. ...|++|+|||++.+
T Consensus 104 dIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~----------- 172 (247)
T cd07491 104 DIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED----------- 172 (247)
T ss_pred cEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC-----------
Confidence 9999999987211 112567888999999999999999999997653 332 346899999986432
Q ss_pred ceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcc
Q 044993 312 NKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTF 391 (713)
Q Consensus 312 g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~ 391 (713)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeee
Q 044993 392 SASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAY 471 (713)
Q Consensus 392 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~ 471 (713)
+.++.||++|+.. |++|||++|+++.
T Consensus 173 ----------------------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~ 198 (247)
T cd07491 173 ----------------------------------------------GGADAPVGDEDRV--------DYILPGENVEARD 198 (247)
T ss_pred ----------------------------------------------CCCccccCCCCcc--------eEEeCCCceecCC
Confidence 3466799999877 9999999999987
Q ss_pred cCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhC
Q 044993 472 TSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVH 513 (713)
Q Consensus 472 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 513 (713)
+.. ....|..++|||||||||||++|||++..
T Consensus 199 ~~~----------~~~~~~~~sGTS~Atp~vaGvaAL~l~~~ 230 (247)
T cd07491 199 RPP----------LSNSFVTHTGSSVATALAAGLAALILYCV 230 (247)
T ss_pred cCC----------CCCCeeeeccHHHHHHHHHHHHHHHHHHH
Confidence 521 01279999999999999999999999853
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-39 Score=325.61 Aligned_cols=221 Identities=22% Similarity=0.221 Sum_probs=173.1
Q ss_pred ccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeeccc-chhhhhcCCCCCCCCCCCCCCCC
Q 044993 79 DVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNK-GLISAATKRNPAFDIPPKLKTGR 157 (713)
Q Consensus 79 Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (713)
||+|||||||||++||+|.+.- ...+.+.. .+ ..+.....
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~ 41 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDLEI-------------IVVSAEGG 41 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------ccccccccccc-------------ccCCCCCC
Confidence 7999999999999999997531 11111110 00 00123445
Q ss_pred CCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCC
Q 044993 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVD 237 (713)
Q Consensus 158 d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvd 237 (713)
|..||||||||||++ .+|+++|+.+|++... +.+..+.+++||+++++.|++
T Consensus 42 d~~gHGT~vAgiia~-------------------~~p~~~i~~~~v~~~~---------~~~~~~~~~~ai~~a~~~~v~ 93 (222)
T cd07492 42 DKDGHGTACAGIIKK-------------------YAPEAEIGSIKILGED---------GRCNSFVLEKALRACVENDIR 93 (222)
T ss_pred CCCCcHHHHHHHHHc-------------------cCCCCeEEEEEEeCCC---------CCcCHHHHHHHHHHHHHCCCC
Confidence 778999999999987 3799999999999876 368889999999999999999
Q ss_pred eeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccCCCCccEEeccccCCceeEEEEEeCCceEEee
Q 044993 238 IITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMAPWMLTVGASTMDREFAGYITLGNNKRLRG 317 (713)
Q Consensus 238 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g 317 (713)
|||||||... ......+..++.++.++|+++|+||||++.... .+...+++|+|++...++
T Consensus 94 Vin~S~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------- 154 (222)
T cd07492 94 IVNLSLGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------- 154 (222)
T ss_pred EEEeCCCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------
Confidence 9999999872 223456778888899999999999999986433 245568899998743211
Q ss_pred cccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccccCCc
Q 044993 318 ASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSASYGF 397 (713)
Q Consensus 318 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~ 397 (713)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecCCCCC
Q 044993 398 LPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTSERGP 477 (713)
Q Consensus 398 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 477 (713)
.. +.+++ ++++.|||.+|+++.+..
T Consensus 155 -----------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~--- 179 (222)
T cd07492 155 -----------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG--- 179 (222)
T ss_pred -----------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC---
Confidence 01 11233 349999999999988763
Q ss_pred CCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 478 TGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 478 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
.|..++|||||||+|||++|||+|++|+|++.|||++|+.||+
T Consensus 180 ----------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ----------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ----------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999984
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=7.2e-40 Score=346.96 Aligned_cols=251 Identities=22% Similarity=0.240 Sum_probs=181.6
Q ss_pred CCCccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCC
Q 044993 65 IPSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRN 144 (713)
Q Consensus 65 ~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~ 144 (713)
+.+..+|+.+++|+||+|+|||||||++||+|.+.-.. ...+.|.+...
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~------- 74 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP------- 74 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC-------
Confidence 34679999999999999999999999999999643110 01222222110
Q ss_pred CCCCCCCCCCCC--CCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHH
Q 044993 145 PAFDIPPKLKTG--RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQ 222 (713)
Q Consensus 145 ~~~~~~~~~~~~--~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~ 222 (713)
...+ .|..+|||||||||+|+.. +..| ..||||+|+|+.+|++... ....
T Consensus 75 --------~~~~~~~~~~gHGT~vAgiiag~~~---~~~~------~~GvAp~a~l~~~~~~~~~-----------~~~~ 126 (297)
T cd04059 75 --------DPTPRYDDDNSHGTRCAGEIAAVGN---NGIC------GVGVAPGAKLGGIRMLDGD-----------VTDV 126 (297)
T ss_pred --------CCCCccccccccCcceeeEEEeecC---CCcc------cccccccceEeEEEecCCc-----------cccH
Confidence 1112 2678999999999999742 1223 6889999999999998643 3334
Q ss_pred HHHHHHHHHHHcCCCeeEeecCCCCCCC---CCcchHHHHHHHHhc-----CCcEEEEecCCCCCCCCCc----cCCCCc
Q 044993 223 DTIEAFDDAIHDGVDIITVSLGYDNIAD---FLSDGVVIGAFHATM-----NGVLTVAASGNGGPEPQTI----NNMAPW 290 (713)
Q Consensus 223 ~i~~ai~~a~~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~~----~~~ap~ 290 (713)
.+..++.++.+ .++|||||||...... .....+..++.++.. +|++||+||||+|...... ....|+
T Consensus 127 ~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~ 205 (297)
T cd04059 127 VEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIY 205 (297)
T ss_pred HHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCc
Confidence 45555555543 5699999999873221 112234455555553 6999999999999732221 124578
Q ss_pred cEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEech
Q 044993 291 MLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEE 370 (713)
Q Consensus 291 vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~ 370 (713)
+|+|||++.
T Consensus 206 vi~Vga~~~----------------------------------------------------------------------- 214 (297)
T cd04059 206 TISVSAVTA----------------------------------------------------------------------- 214 (297)
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999997543
Q ss_pred hhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCC
Q 044993 371 KGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNR 450 (713)
Q Consensus 371 k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~ 450 (713)
.+.++.||++|+..
T Consensus 215 ------------------------------------------------------------------~g~~~~~s~~g~~~ 228 (297)
T cd04059 215 ------------------------------------------------------------------NGVRASYSEVGSSV 228 (297)
T ss_pred ------------------------------------------------------------------CCCCcCCCCCCCcE
Confidence 24567899999987
Q ss_pred CCCCCCCCceeeCCCc-------EEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044993 451 IDPSIIKPDVIAPGVN-------IVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKS 523 (713)
Q Consensus 451 ~~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 523 (713)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||.
T Consensus 229 --------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~ 290 (297)
T cd04059 229 --------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQH 290 (297)
T ss_pred --------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHH
Confidence 89999987 66665541 012678899999999999999999999999999999999
Q ss_pred HHHhccc
Q 044993 524 AIMTTAR 530 (713)
Q Consensus 524 ~L~~TA~ 530 (713)
+|++||+
T Consensus 291 ~L~~TA~ 297 (297)
T cd04059 291 ILALTAR 297 (297)
T ss_pred HHHHhcC
Confidence 9999984
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=5e-39 Score=340.08 Aligned_cols=208 Identities=29% Similarity=0.325 Sum_probs=153.2
Q ss_pred CCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHc
Q 044993 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHD 234 (713)
Q Consensus 155 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~ 234 (713)
...|..||||||||+|+|+. ...||||+|+|+.+|+++.. +.....+++++|++|++.
T Consensus 48 ~~~d~~gHGT~vAgiia~~~-------------~~~GvAp~a~i~~~~v~~~~---------~~~~~~~~~~ai~~a~~~ 105 (294)
T cd07482 48 DIVDKLGHGTAVAGQIAANG-------------NIKGVAPGIGIVSYRVFGSC---------GSAESSWIIKAIIDAADD 105 (294)
T ss_pred cCCCCCCcHhHHHHHHhcCC-------------CCceeCCCCEEEEEEeecCC---------CCcCHHHHHHHHHHHHHC
Confidence 44577899999999999862 13479999999999999876 235788999999999999
Q ss_pred CCCeeEeecCCCCCCCC-------CcchHHHHHHHHhcCCcEEEEecCCCCCCCCC----------------------cc
Q 044993 235 GVDIITVSLGYDNIADF-------LSDGVVIGAFHATMNGVLTVAASGNGGPEPQT----------------------IN 285 (713)
Q Consensus 235 gvdVIn~SlG~~~~~~~-------~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~----------------------~~ 285 (713)
+++|||||||....... ....+..++..+.++|++||+||||+|..... ..
T Consensus 106 ~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 185 (294)
T cd07482 106 GVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVP 185 (294)
T ss_pred CCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecc
Confidence 99999999998632111 11346667777889999999999999854311 11
Q ss_pred CCCCccEEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEE
Q 044993 286 NMAPWMLTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILV 365 (713)
Q Consensus 286 ~~ap~vitVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 365 (713)
...+++|+|||++
T Consensus 186 ~~~~~vi~Vga~~------------------------------------------------------------------- 198 (294)
T cd07482 186 ASLPNVITVSATD------------------------------------------------------------------- 198 (294)
T ss_pred cccCceEEEEeeC-------------------------------------------------------------------
Confidence 1234555555432
Q ss_pred EEechhhHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccC
Q 044993 366 CLHEEKGYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSS 445 (713)
Q Consensus 366 ~~~~~k~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 445 (713)
..+.++.||+
T Consensus 199 ----------------------------------------------------------------------~~~~~~~~S~ 208 (294)
T cd07482 199 ----------------------------------------------------------------------NNGNLSSFSN 208 (294)
T ss_pred ----------------------------------------------------------------------CCCCcCcccc
Confidence 1355678999
Q ss_pred CCCCCCCCCCCCCceeeCCCcEEeeecCCCCC---CC------CcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCC
Q 044993 446 RGPNRIDPSIIKPDVIAPGVNIVAAYTSERGP---TG------YARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDW 516 (713)
Q Consensus 446 ~GPt~~~~~~~KPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~ 516 (713)
+|+.. +|++|||+++.......... .. .......+.|..++|||||||+|||++|||+|++|.|
T Consensus 209 ~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~ 281 (294)
T cd07482 209 YGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLK 281 (294)
T ss_pred CCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCC
Confidence 98754 49999999885322211000 00 0011234578999999999999999999999999999
Q ss_pred CH-HHHHHHHHhc
Q 044993 517 SP-AAIKSAIMTT 528 (713)
Q Consensus 517 sp-~~ik~~L~~T 528 (713)
++ .|||++|++|
T Consensus 282 ~~~~~v~~~L~~T 294 (294)
T cd07482 282 KPPDEAIRILYNT 294 (294)
T ss_pred CcHHHHHHHHhhC
Confidence 99 9999999986
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.9e-38 Score=329.10 Aligned_cols=245 Identities=26% Similarity=0.293 Sum_probs=185.6
Q ss_pred CCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCC
Q 044993 76 FGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKT 155 (713)
Q Consensus 76 ~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (713)
+|+||+|+|||+||+++||+|.+.... ...+..... .....
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~~-------------~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVND-------------AGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------ccccccccc-------------ccCCC
Confidence 699999999999999999999753110 000000000 00123
Q ss_pred CCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcC
Q 044993 156 GRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDG 235 (713)
Q Consensus 156 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~g 235 (713)
..|..+|||||||||+|+... ..+.|+||+|+|+.+|+++... ..+....+.++++++++.+
T Consensus 42 ~~~~~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 103 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAG--------STFSDADIAAAYDFLAASG 103 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCC--------cccchHHHHHHHHHHHhCC
Confidence 356789999999999998422 3388999999999999998651 1466788999999999999
Q ss_pred CCeeEeecCCCCCCC-----------CCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCcc---------CCCCccEEec
Q 044993 236 VDIITVSLGYDNIAD-----------FLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTIN---------NMAPWMLTVG 295 (713)
Q Consensus 236 vdVIn~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~---------~~ap~vitVg 295 (713)
++|||||||...... .....+...+..+.++|+++|+||||++....... ...+++|+||
T Consensus 104 ~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vg 183 (267)
T cd04848 104 VRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVV 183 (267)
T ss_pred CeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEE
Confidence 999999999983211 14456777888888999999999999986433322 2357889999
Q ss_pred cccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHH
Q 044993 296 ASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEA 375 (713)
Q Consensus 296 A~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~ 375 (713)
+++.+.
T Consensus 184 a~~~~~-------------------------------------------------------------------------- 189 (267)
T cd04848 184 AVDPNG-------------------------------------------------------------------------- 189 (267)
T ss_pred EecCCC--------------------------------------------------------------------------
Confidence 865432
Q ss_pred hhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcccc--ccCCCCCCCCC
Q 044993 376 AKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVAS--FSSRGPNRIDP 453 (713)
Q Consensus 376 ~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GPt~~~~ 453 (713)
.... ||++|+..
T Consensus 190 ---------------------------------------------------------------~~~~~~~s~~~~~~--- 203 (267)
T cd04848 190 ---------------------------------------------------------------TIASYSYSNRCGVA--- 203 (267)
T ss_pred ---------------------------------------------------------------Ccccccccccchhh---
Confidence 1222 48887643
Q ss_pred CCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 044993 454 SIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTAR 530 (713)
Q Consensus 454 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 530 (713)
-.++++|||.+|+++.+... ..|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 204 --~~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 --ANWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred --hhheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 23479999999999887311 27889999999999999999999999999999999999999984
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-37 Score=322.49 Aligned_cols=306 Identities=26% Similarity=0.392 Sum_probs=241.0
Q ss_pred HHHHhhCCCCeEEEEeccccccCCC------------CCccc-cC-------------CCcCCC-----------CCCcc
Q 044993 27 HAQQLANHPEVVSVFLNKPTKKLTT------------GAWNF-LG-------------LEKDNV-----------IPSNS 69 (713)
Q Consensus 27 ~~~~L~~~~~V~~V~~~~~~~~~~~------------~s~~~-~g-------------~~~~~~-----------~~~~~ 69 (713)
++++|+.+|.|+.|.|.+.+..-.. .+..+ .| +....| ..++-
T Consensus 113 ~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~ 192 (1033)
T KOG4266|consen 113 EIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADH 192 (1033)
T ss_pred eeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhh
Confidence 4799999999999999887643110 00000 00 011111 25678
Q ss_pred ccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCC
Q 044993 70 TWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDI 149 (713)
Q Consensus 70 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 149 (713)
+|+.|++|++|+|||.|||+.-+||.|+.- ....++.+
T Consensus 193 LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN--------------- 230 (1033)
T KOG4266|consen 193 LWKKGYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN--------------- 230 (1033)
T ss_pred HHhccccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC---------------
Confidence 999999999999999999999999999731 11111111
Q ss_pred CCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHH
Q 044993 150 PPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFD 229 (713)
Q Consensus 150 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~ 229 (713)
-..-.|..||||.|||+|||.. ...|.||+++|++.|||.+.+ -.+.+.++.||.
T Consensus 231 ---E~tLdD~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q---------VSYTSWFLDAFN 285 (1033)
T KOG4266|consen 231 ---EDTLDDNLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ---------VSYTSWFLDAFN 285 (1033)
T ss_pred ---ccccccCcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce---------eehhhHHHHHHH
Confidence 1133467899999999999973 256799999999999998874 588999999999
Q ss_pred HHHHcCCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCCCccCCCC--ccEEeccccCCceeEEEE
Q 044993 230 DAIHDGVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQTINNMAP--WMLTVGASTMDREFAGYI 307 (713)
Q Consensus 230 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~ap--~vitVgA~~~~~~~~~~~ 307 (713)
+||...+||+|+|+|++ ++.+.|+.+-+.....++|++|.|+||+||-.++..+++. .||-||..
T Consensus 286 YAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI---------- 352 (1033)
T KOG4266|consen 286 YAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI---------- 352 (1033)
T ss_pred HHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc----------
Confidence 99999999999999998 5677899999999999999999999999999999999774 45555521
Q ss_pred EeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEcc
Q 044993 308 TLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGA 387 (713)
Q Consensus 308 ~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~ 387 (713)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCC----CCCCCCCceeeC
Q 044993 388 SGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRI----DPSIIKPDVIAP 463 (713)
Q Consensus 388 ~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~----~~~~~KPDI~AP 463 (713)
...+.++.|||||-+.+ .-||+||||++-
T Consensus 353 -----------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 353 -----------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -----------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEee
Confidence 11478999999996642 269999999999
Q ss_pred CCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCcc
Q 044993 464 GVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKT----VHPDWSPAAIKSAIMTTARATDANNKPI 539 (713)
Q Consensus 464 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~ 539 (713)
|.+|....... +-..+||||.|+|.|||+++||.+ +.--+.|+.+|.+|+..|.++...
T Consensus 386 G~~v~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 99987665442 677899999999999999999976 233468999999999999998643
Q ss_pred ccCCCCCCCCCccCccccCccCcCC
Q 044993 540 SEFNGKEATAFAYGSGHVDPNSALD 564 (713)
Q Consensus 540 ~~~~~~~~~~~~~G~G~id~~~A~~ 564 (713)
.-+.||+|++|+.++++
T Consensus 449 --------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 --------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred --------chhhccCcchhHHHHHH
Confidence 35799999999999887
No 37
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=317.82 Aligned_cols=287 Identities=23% Similarity=0.334 Sum_probs=222.4
Q ss_pred eeeeEEEEcCHHHHHHhhCCCCeEEEEecccccc--------CCCCCccccCCCcCCCC----CCccccccCCCCCccEE
Q 044993 15 HINGFAADLEEEHAQQLANHPEVVSVFLNKPTKK--------LTTGAWNFLGLEKDNVI----PSNSTWEKARFGEDVII 82 (713)
Q Consensus 15 ~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~~~~~--------~~~~s~~~~g~~~~~~~----~~~~~~~~~~~G~Gv~V 82 (713)
+|+|+.-..+.+-+..++..|-++.+++...... ++...|....+....+. .-..+++ -..|+||..
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvta 223 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTA 223 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEE
Confidence 7788888899999999999999999998876543 22333333222211100 0011222 238999999
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 044993 83 GGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPAFDIPPKLKTGRDLDGH 162 (713)
Q Consensus 83 gVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 162 (713)
-|+||||+.+||+|.+.- .|- .|. . .-....|++||
T Consensus 224 Yv~DTGVni~H~dFegRa------~wG-a~i-------------------~------------------~~~~~~D~nGH 259 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGRA------IWG-ATI-------------------P------------------PKDGDEDCNGH 259 (501)
T ss_pred EEecccccccccccccce------ecc-ccc-------------------C------------------CCCcccccCCC
Confidence 999999999999996531 111 110 0 01123578999
Q ss_pred chhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHc--------
Q 044993 163 GTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHD-------- 234 (713)
Q Consensus 163 GThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~-------- 234 (713)
||||||+|++. .-|||-+++|+++||+..+ |....+++++++|++++.
T Consensus 260 GTH~AG~I~sK---------------t~GvAK~s~lvaVKVl~~d---------GsGt~Sdvi~GvE~~~k~h~~~k~~~ 315 (501)
T KOG1153|consen 260 GTHVAGLIGSK---------------TFGVAKNSNLVAVKVLRSD---------GSGTVSDVIKGVEFVVKHHEKKKKKE 315 (501)
T ss_pred cceeeeeeecc---------------ccccccccceEEEEEeccC---------CcEeHHHHHhHHHHHHHHhhhhhccc
Confidence 99999999987 4569999999999999988 489999999999999986
Q ss_pred -CCCeeEeecCCCCCCCCCcchHHHHHHHHhcCCcEEEEecCCCCCCCC-CccCCCCccEEeccccCCceeEEEEEeCCc
Q 044993 235 -GVDIITVSLGYDNIADFLSDGVVIGAFHATMNGVLTVAASGNGGPEPQ-TINNMAPWMLTVGASTMDREFAGYITLGNN 312 (713)
Q Consensus 235 -gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~g~g 312 (713)
+..|.|||+|+. ..-.+..|++.|.+.|+.+++||||+..+.. +.+..+..+|||||++.
T Consensus 316 ~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~------------- 377 (501)
T KOG1153|consen 316 GKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK------------- 377 (501)
T ss_pred CCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc-------------
Confidence 467999999998 3446889999999999999999999986543 44456789999998742
Q ss_pred eEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCccc
Q 044993 313 KRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFS 392 (713)
Q Consensus 313 ~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~ 392 (713)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeec
Q 044993 393 ASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYT 472 (713)
Q Consensus 393 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~ 472 (713)
.+.++.||+||++. ||-|||++|+|+|.
T Consensus 378 --------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~i 405 (501)
T KOG1153|consen 378 --------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWI 405 (501)
T ss_pred --------------------------------------------ccchhhhcCcccee--------eeecCchhhhhhhh
Confidence 36789999999999 99999999999998
Q ss_pred CCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhcccc
Q 044993 473 SERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPD---------WSPAAIKSAIMTTARA 531 (713)
Q Consensus 473 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------~sp~~ik~~L~~TA~~ 531 (713)
+... .-.++||||||+|||||++|..+.++|. .+|.++|..++.-..+
T Consensus 406 Gs~~-----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 406 GSNN-----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred cCcc-----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 8533 6678999999999999999999999883 3888888887766543
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-34 Score=312.09 Aligned_cols=357 Identities=22% Similarity=0.260 Sum_probs=231.1
Q ss_pred CCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCe
Q 044993 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDI 238 (713)
Q Consensus 159 ~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdV 238 (713)
..-|||||||||+|+..+.. ...|+||+|+|+.+++.+..- |..-+...+.+|+..++++.+||
T Consensus 309 Sg~HGTHVAgIa~anhpe~p---------~~NGvAPgaqIvSl~IGD~RL-------gsMETgtaltRA~~~v~e~~vDi 372 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP---------ELNGVAPGAQIVSLKIGDGRL-------GSMETGTALTRAMIEVIEHNVDI 372 (1304)
T ss_pred CCCCcceehhhhccCCCCCc---------cccCCCCCCEEEEEEecCccc-------cccccchHHHHHHHHHHHhcCCE
Confidence 45699999999999964433 356799999999999965321 11344667999999999999999
Q ss_pred eEeecCCCCCCCCCcc-hHHHHHHHHh-cCCcEEEEecCCCCCCCCCccCC---CCccEEeccccCCceeEEEEEeCCce
Q 044993 239 ITVSLGYDNIADFLSD-GVVIGAFHAT-MNGVLTVAASGNGGPEPQTINNM---APWMLTVGASTMDREFAGYITLGNNK 313 (713)
Q Consensus 239 In~SlG~~~~~~~~~~-~~~~a~~~a~-~~Gv~vV~AAGN~G~~~~~~~~~---ap~vitVgA~~~~~~~~~~~~~g~g~ 313 (713)
||||+|-.. ++.+. .+-+.+.+++ ++||++|+||||+||...+++.+ ...+|.|||.-......
T Consensus 373 INmSyGE~a--~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~--------- 441 (1304)
T KOG1114|consen 373 INMSYGEDA--HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ--------- 441 (1304)
T ss_pred EEeccCccC--CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH---------
Confidence 999999983 34322 3344444555 88999999999999988888764 35788888732221100
Q ss_pred EEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCCcccc
Q 044993 314 RLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASGTFSA 393 (713)
Q Consensus 314 ~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g~~~~ 393 (713)
..|.+.
T Consensus 442 -------------a~y~~~------------------------------------------------------------- 447 (1304)
T KOG1114|consen 442 -------------AEYSVR------------------------------------------------------------- 447 (1304)
T ss_pred -------------hhhhhh-------------------------------------------------------------
Confidence 000000
Q ss_pred cCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCCCCCCceeeCCCcEEeeecC
Q 044993 394 SYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIKPDVIAPGVNIVAAYTS 473 (713)
Q Consensus 394 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~KPDI~APG~~I~sa~~~ 473 (713)
......+..||||||+. ||.+--.|.|||+.|.+.-.-
T Consensus 448 ----------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~ 485 (1304)
T KOG1114|consen 448 ----------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQY 485 (1304)
T ss_pred ----------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchh
Confidence 01134577899999999 999999999999998664322
Q ss_pred CCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCC
Q 044993 474 ERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTV----HPDWSPAAIKSAIMTTARATDANNKPISEFNGKEATA 549 (713)
Q Consensus 474 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 549 (713)
.. ..-..|+|||||+|+++|.+|||++. +-.|||..||.+|++||.++.+. .+
T Consensus 486 tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~ 542 (1304)
T KOG1114|consen 486 TL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DS 542 (1304)
T ss_pred hh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------ch
Confidence 11 15678999999999999999999654 67899999999999999998532 57
Q ss_pred CccCccccCccCcCCCCeeecCCccccccccccCCCccceeeeeecCCCCCCCCCC---CCCCCCCCceEEeecCCceEE
Q 044993 550 FAYGSGHVDPNSALDPGLVYDLTLDDYLGYLCNRGYKEDVVKKFVVDPAKHPCPKS---FELANFNYPSIAIPELAGSVT 626 (713)
Q Consensus 550 ~~~G~G~id~~~A~~~~lv~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ln~ps~~~~~~~~~~t 626 (713)
+.||.|+|++.+|.+--.-.+ -.|.-.++| |..-.+ -+|... +.+...+-| ..
T Consensus 543 faqG~GmlqVdkAyEyL~q~~------~~f~~~l~f----~~v~Vg----N~~srGIyLRep~~~~~p----------~e 598 (1304)
T KOG1114|consen 543 FAQGQGMLQVDKAYEYLAQSD------FSFPNALGF----INVNVG----NSCSRGIYLREPTQVCSP----------SE 598 (1304)
T ss_pred hccCcceeehhHHHHHHHHhh------hcCCcccee----EEEeec----cccccceEecCCcccCCc----------cc
Confidence 899999999999987200011 111111222 000011 122110 001111111 11
Q ss_pred EEEEE----EecC---C-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEEEc-
Q 044993 627 VTRKL----KNVG---T-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWSD- 697 (713)
Q Consensus 627 ~~~tv----tn~~---~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~~~- 697 (713)
+++-| .|-- . ...|.+.+....--.+---|+.|-+ .++.+.|-|+|+++. ...+..++.|.-.|
T Consensus 599 ~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~-----l~~G~hy~eV~gyD~ 671 (1304)
T KOG1114|consen 599 HTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG-----LAPGVHYTEVLGYDT 671 (1304)
T ss_pred cceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC-----CCCCcceEEEEEeec
Confidence 11111 1100 0 1223333222111123334777766 578889999998866 66777788877654
Q ss_pred ----CCcEEEeeEEEEeec
Q 044993 698 ----GTHRVRSPIALKQKS 712 (713)
Q Consensus 698 ----~~~~v~~P~~~~~~~ 712 (713)
.++.+|+|+.|...+
T Consensus 672 ~~p~~gplFrIPVTVi~P~ 690 (1304)
T KOG1114|consen 672 ANPSRGPLFRIPVTVIKPK 690 (1304)
T ss_pred CCcccCceEEeeeEEEccc
Confidence 378999999887653
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-33 Score=282.03 Aligned_cols=194 Identities=23% Similarity=0.225 Sum_probs=141.6
Q ss_pred CCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHH--HH
Q 044993 156 GRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDA--IH 233 (713)
Q Consensus 156 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a--~~ 233 (713)
..|..+|||||||||+|. .|++|+++|+..++.. ...+.+.++++|+ .+
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~-------------~~~~~~~~~i~~~~~~~ 83 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGI-------------KSNNGQWQECLEAQQNG 83 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCC-------------CCCCccHHHHHHHHHhc
Confidence 457899999999999996 2367999998765522 1223356777777 67
Q ss_pred cCCCeeEeecCCCCCCC-----CCcchHHHHHHHHhcC-CcEEEEecCCCCCCC---CCc--cCCCCccEEeccccCCce
Q 044993 234 DGVDIITVSLGYDNIAD-----FLSDGVVIGAFHATMN-GVLTVAASGNGGPEP---QTI--NNMAPWMLTVGASTMDRE 302 (713)
Q Consensus 234 ~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~---~~~--~~~ap~vitVgA~~~~~~ 302 (713)
.+++|||||||...... +..+.+..+++.+.++ |+++|+||||+|... ..+ ...++++|+|||++....
T Consensus 84 ~gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~ 163 (247)
T cd07488 84 NNVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD 163 (247)
T ss_pred CCceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC
Confidence 89999999999873222 1234577788887766 999999999999743 222 234678999998653321
Q ss_pred eEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceE
Q 044993 303 FAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVA 382 (713)
Q Consensus 303 ~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g 382 (713)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCC--CCCCCCCCCCCCce
Q 044993 383 MITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSR--GPNRIDPSIIKPDV 460 (713)
Q Consensus 383 ~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GPt~~~~~~~KPDI 460 (713)
....+.||++ +|+. +++.||||
T Consensus 164 ------------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di 187 (247)
T cd07488 164 ------------------------------------------------------RFFASDVSNAGSEINS--YGRRKVLI 187 (247)
T ss_pred ------------------------------------------------------cceecccccccCCCCC--CCCceeEE
Confidence 0112345554 5554 78899999
Q ss_pred eeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHhcc
Q 044993 461 IAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSP------AAIKSAIMTTA 529 (713)
Q Consensus 461 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp------~~ik~~L~~TA 529 (713)
+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ .++|.+|++++
T Consensus 188 ~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 188 VAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 999999998 22 16889999999999999999999999887664 45677777653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=9.1e-31 Score=267.23 Aligned_cols=197 Identities=34% Similarity=0.460 Sum_probs=157.1
Q ss_pred CCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHH-H
Q 044993 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAI-H 233 (713)
Q Consensus 155 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~-~ 233 (713)
...+..+||||||++|++.... ....|+||+++|+.+|+.... +......+++++++++ .
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~----------~~~~g~a~~a~i~~~~~~~~~---------~~~~~~~~~~ai~~~~~~ 99 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANN----------GGGVGVAPGAKLIPVKVLDGD---------GSGSSSDIAAAIDYAAAD 99 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CCCEEeCCCCEEEEEEEecCC---------CCcCHHHHHHHHHHHHhc
Confidence 3456789999999999997321 123889999999999998765 2467888999999999 8
Q ss_pred cCCCeeEeecCCCCCCCCCcchHHHHHHHHhcC-CcEEEEecCCCCCCCC---CccCCCCccEEeccccCCceeEEEEEe
Q 044993 234 DGVDIITVSLGYDNIADFLSDGVVIGAFHATMN-GVLTVAASGNGGPEPQ---TINNMAPWMLTVGASTMDREFAGYITL 309 (713)
Q Consensus 234 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~ 309 (713)
.+++|||||||.... .....+...+..+.++ |+++|+|+||.+.... ......+++|+||+++.+.
T Consensus 100 ~~~~iin~S~g~~~~--~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------- 169 (241)
T cd00306 100 QGADVINLSLGGPGS--PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------- 169 (241)
T ss_pred cCCCEEEeCCCCCCC--CCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------
Confidence 999999999999822 1355678888888887 9999999999997654 3556779999999865432
Q ss_pred CCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHHHhhcCceEEEEccCC
Q 044993 310 GNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYEAAKKGAVAMITGASG 389 (713)
Q Consensus 310 g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~g 389 (713)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCcc-ccccCCCCCCCCCCCCCCceeeCCCcEE
Q 044993 390 TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAV-ASFSSRGPNRIDPSIIKPDVIAPGVNIV 468 (713)
Q Consensus 390 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~GPt~~~~~~~KPDI~APG~~I~ 468 (713)
.. ..++.+| .|||+.|||..+.
T Consensus 170 -------------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~ 192 (241)
T cd00306 170 -------------------------------------------------TPASPSSNGG--------AGVDIAAPGGDIL 192 (241)
T ss_pred -------------------------------------------------CccCCcCCCC--------CCceEEeCcCCcc
Confidence 11 1334444 4669999999988
Q ss_pred eeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 044993 469 AAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 469 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 528 (713)
..... ....+..++|||||||+|||++|||+|++|++++.++|.+|+.|
T Consensus 193 ~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 193 SSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 75111 12388999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.6e-23 Score=234.28 Aligned_cols=274 Identities=27% Similarity=0.381 Sum_probs=197.8
Q ss_pred Ccccccc--CCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCC
Q 044993 67 SNSTWEK--ARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRN 144 (713)
Q Consensus 67 ~~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~ 144 (713)
...+|.. +.+|+|++|+|||+||+..||+|.+.. ...++|.+..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~--------------------------~~~~~~~~~~-------- 174 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA--------------------------VAGGDFVDGD-------- 174 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccc--------------------------ccccccccCC--------
Confidence 3567887 899999999999999999999996531 0012222210
Q ss_pred CCCCCCCCCC-CCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHH
Q 044993 145 PAFDIPPKLK-TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQD 223 (713)
Q Consensus 145 ~~~~~~~~~~-~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~ 223 (713)
.. ...|..+|||||++++++... .+. ..+.|+||+++++.+|++.... +.....+
T Consensus 175 --------~~~~~~d~~~hGt~vag~ia~~~~--~~~------~~~~g~a~~~~~~~~~~~~~~~--------g~~~~~~ 230 (508)
T COG1404 175 --------PEPPFLDDNGHGTHVAGTIAAVIF--DNG------AGVAGVAPGAKLLLVKVLGSGG--------GSGELSD 230 (508)
T ss_pred --------CCCCCCCCCCCcceeeeeeeeecc--cCC------CccccccCCCcEEEEEeccCCC--------CcccHHH
Confidence 11 245789999999999998421 111 2278899999999999998641 2566777
Q ss_pred HHHHHHHHHHcC--CCeeEeecCCCCCCCCCcchHHHHHHHHhcCC-cEEEEecCCCCCCCCC----ccCCC--CccEEe
Q 044993 224 TIEAFDDAIHDG--VDIITVSLGYDNIADFLSDGVVIGAFHATMNG-VLTVAASGNGGPEPQT----INNMA--PWMLTV 294 (713)
Q Consensus 224 i~~ai~~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~a--p~vitV 294 (713)
++++|++++..+ +++||||+|.. ........+..++..++..| +++|+++||.|..... .+... +.+++|
T Consensus 231 ~~~~i~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v 309 (508)
T COG1404 231 VAEGIEGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAV 309 (508)
T ss_pred HHHHHHHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEE
Confidence 899999999999 99999999985 22334556777888888777 9999999999865421 11111 355666
Q ss_pred ccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechhhHH
Q 044993 295 GASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEKGYE 374 (713)
Q Consensus 295 gA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~ 374 (713)
+|...
T Consensus 310 ~a~~~--------------------------------------------------------------------------- 314 (508)
T COG1404 310 GALDL--------------------------------------------------------------------------- 314 (508)
T ss_pred ecCCC---------------------------------------------------------------------------
Confidence 65321
Q ss_pred HhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCCCCC
Q 044993 375 AAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPS 454 (713)
Q Consensus 375 ~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~ 454 (713)
...++.||++|+..
T Consensus 315 --------------------------------------------------------------~~~~~~~s~~g~~~---- 328 (508)
T COG1404 315 --------------------------------------------------------------SDTVASFSNDGSPT---- 328 (508)
T ss_pred --------------------------------------------------------------CCccccccccCCCC----
Confidence 25677899999752
Q ss_pred CCCCceeeCCCcEEe-----eecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhc
Q 044993 455 IIKPDVIAPGVNIVA-----AYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHP-DWSPAAIKSAIMTT 528 (713)
Q Consensus 455 ~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~sp~~ik~~L~~T 528 (713)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..+
T Consensus 329 --~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~ 395 (508)
T COG1404 329 --GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTT 395 (508)
T ss_pred --CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhc
Confidence 2399999999988 444421 1499999999999999999999999999 89999999998888
Q ss_pred ccccCCCCCccccCCCCCCCCCccCccccCccCcCC
Q 044993 529 ARATDANNKPISEFNGKEATAFAYGSGHVDPNSALD 564 (713)
Q Consensus 529 A~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 564 (713)
+.. . ........++.|..+......
T Consensus 396 ~~~-~----------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 396 AGL-T----------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccc-c----------cCCccccccccCccccccccc
Confidence 763 0 011234456666666555444
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.3e-19 Score=179.13 Aligned_cols=308 Identities=18% Similarity=0.249 Sum_probs=183.4
Q ss_pred CCccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCC
Q 044993 66 PSNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNP 145 (713)
Q Consensus 66 ~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~ 145 (713)
++..+|..|++|++|+++|+|.||||-||+++.+ | .--..++|..+.
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y------naeasydfssnd--------- 195 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y------NAEASYDFSSND--------- 195 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c------CceeecccccCC---------
Confidence 4678999999999999999999999999999531 1 111223343221
Q ss_pred CCCCCCCCC-CCCC-CCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHH
Q 044993 146 AFDIPPKLK-TGRD-LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQD 223 (713)
Q Consensus 146 ~~~~~~~~~-~~~d-~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~ 223 (713)
+.++. -..| .+.|||.|||-+++...++.. | .|||.+.++..+|.++.. +-.+
T Consensus 196 ----pfpyprytddwfnshgtrcagev~aardngic--g-------vgvaydskvagirmldqp------------ymtd 250 (629)
T KOG3526|consen 196 ----PFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G-------VGVAYDSKVAGIRMLDQP------------YMTD 250 (629)
T ss_pred ----CCCCCcccchhhhccCccccceeeeeccCCce--e-------eeeeeccccceeeecCCc------------hhhh
Confidence 11111 1112 578999999998887544333 3 669999999999998743 3445
Q ss_pred HHHHHHHHHH-cCCCeeEeecCCCCCCCCCcch---HHHHHHHHhc-----CCcEEEEecCCCCCCCCCcc---CCCCcc
Q 044993 224 TIEAFDDAIH-DGVDIITVSLGYDNIADFLSDG---VVIGAFHATM-----NGVLTVAASGNGGPEPQTIN---NMAPWM 291 (713)
Q Consensus 224 i~~ai~~a~~-~gvdVIn~SlG~~~~~~~~~~~---~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~~~---~~ap~v 291 (713)
+++|-...-+ ..++|-+-|||........+.| ..+++-+-+. .|-+.|.|.|..|.+..--. ..+-|.
T Consensus 251 lieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwt 330 (629)
T KOG3526|consen 251 LIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWT 330 (629)
T ss_pred hhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEE
Confidence 5554322221 3478899999988433223333 3344444333 46689999999885421111 123466
Q ss_pred EEeccccCCceeEEEEEeCCceEEeecccccCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEechh
Q 044993 292 LTVGASTMDREFAGYITLGNNKRLRGASLSVDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHEEK 371 (713)
Q Consensus 292 itVgA~~~~~~~~~~~~~g~g~~~~g~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k 371 (713)
|++-+.-.|. +.. .++..|..
T Consensus 331 isinsaindg-----------~na----------------------------hydescss-------------------- 351 (629)
T KOG3526|consen 331 ISINSAINDG-----------ENA----------------------------HYDESCSS-------------------- 351 (629)
T ss_pred EEeehhhcCC-----------ccc----------------------------cccchhhH--------------------
Confidence 6654322221 000 12223321
Q ss_pred hHHHhhcCceEEEEccCCcccccCCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCCC
Q 044993 372 GYEAAKKGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRI 451 (713)
Q Consensus 372 ~~~~~~~Ga~g~i~~~~g~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~ 451 (713)
-..+.||+-|-.+
T Consensus 352 ------------------------------------------------------------------tlastfsng~rnp- 364 (629)
T KOG3526|consen 352 ------------------------------------------------------------------TLASTFSNGGRNP- 364 (629)
T ss_pred ------------------------------------------------------------------HHHHHhhcCCcCC-
Confidence 1234566655433
Q ss_pred CCCCCCCceeeCCCcEEeeecCCCCCCCCcCCCCccceeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 044993 452 DPSIIKPDVIAPGVNIVAAYTSERGPTGYARDNRRFAFTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSAIMTTARA 531 (713)
Q Consensus 452 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 531 (713)
+- |+...--| ......-||||.|||-+||+-||-++++|.|+..+++.+-.-|.+.
T Consensus 365 -------et---gvattdly--------------g~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskr 420 (629)
T KOG3526|consen 365 -------ET---GVATTDLY--------------GRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKR 420 (629)
T ss_pred -------Cc---ceeeeccc--------------cceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeeccc
Confidence 11 21111111 1255667999999999999999999999999999999988777765
Q ss_pred cC-CCCCcccc---CCCCCCCCCccCccccCccCcCCCCeeecCCccccccccccCC
Q 044993 532 TD-ANNKPISE---FNGKEATAFAYGSGHVDPNSALDPGLVYDLTLDDYLGYLCNRG 584 (713)
Q Consensus 532 ~~-~~g~~~~~---~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~d~~~~~~~~~ 584 (713)
.. ..++.-.. ..-....+.-+|+|.+|+.+-+.-...+...+.- |-|..|
T Consensus 421 nslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 421 NSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred chhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCc---eeeccc
Confidence 42 11111000 1123456778999999987766543334443333 345555
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=6.5e-17 Score=175.18 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=78.9
Q ss_pred ceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHc---CCCeeEeecCCCCCCC--CCcchHHHHHH
Q 044993 187 GTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHD---GVDIITVSLGYDNIAD--FLSDGVVIGAF 261 (713)
Q Consensus 187 g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~~--~~~~~~~~a~~ 261 (713)
..+.||||+|+|+.|+++.. ....++.++.+++.+ +++|||||||...... .+...+..++.
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~-------------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~ 147 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGT-------------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFA 147 (361)
T ss_pred HHHHhccCCCeEEEEEECCc-------------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHH
Confidence 44788999999999999653 244577888888887 9999999999982110 12245777888
Q ss_pred HHhcCCcEEEEecCCCCCCCCC-----------ccCCCCccEEeccccCCc
Q 044993 262 HATMNGVLTVAASGNGGPEPQT-----------INNMAPWMLTVGASTMDR 301 (713)
Q Consensus 262 ~a~~~Gv~vV~AAGN~G~~~~~-----------~~~~ap~vitVgA~~~~~ 301 (713)
+|..+||+||+|+||+|..... .....|||++||+++...
T Consensus 148 ~a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 148 QAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HHHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 8889999999999999975432 234679999999987664
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.96 E-value=3.6e-09 Score=99.27 Aligned_cols=108 Identities=30% Similarity=0.362 Sum_probs=81.6
Q ss_pred CCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCCc--ccc-cC
Q 044993 326 RKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASGT--FSA-SY 395 (713)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g~--~~~-~~ 395 (713)
....++|+.+. |...++...+++||||||+| .+|..+++++||.++|+ + ..+. ... ..
T Consensus 25 ~~~~~lv~~g~------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~ 92 (143)
T cd02133 25 GKTYELVDAGL------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEA 92 (143)
T ss_pred CcEEEEEEccC------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCC
Confidence 45778888643 44555666789999999997 57999999999999999 2 3332 111 12
Q ss_pred CcccEEEeehhhHHHHHHHHhcCCCcEEEEeecceeccccCCCccccccCCCCCC
Q 044993 396 GFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNR 450 (713)
Q Consensus 396 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~ 450 (713)
..+|+++|+.++|+.|++|+++ ++++.+..+.. ..+.+.++.||||||+.
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 93 VFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 5689999999999999999988 45555555544 45678899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.90 E-value=1.2e-08 Score=93.62 Aligned_cols=113 Identities=34% Similarity=0.553 Sum_probs=86.5
Q ss_pred EEeCCceEEeecccc-cCCCCCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe------chhhHHHhhcC
Q 044993 307 ITLGNNKRLRGASLS-VDMPRKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH------EEKGYEAAKKG 379 (713)
Q Consensus 307 ~~~g~g~~~~g~~~~-~~~~~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~------~~k~~~~~~~G 379 (713)
+.||||+.+.|++++ ... ..+++++..... .......|.+..++..+++||||||+| .+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~---~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS---GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC---CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 578999999999998 333 456777633211 114457899888888999999999987 36789999999
Q ss_pred ceEEEE-c-cCC--cccccCCcccEEEeehhhHHHHHHHHhcCCCcEEE
Q 044993 380 AVAMIT-G-ASG--TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAF 424 (713)
Q Consensus 380 a~g~i~-~-~~g--~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 424 (713)
|.|+|+ + ..+ ........+|++.|+.++++.|++|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999 2 222 22223467999999999999999999998776554
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.8e-07 Score=97.67 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=98.0
Q ss_pred CccccccCCCCCccEEEEeccccCCCCCCCCCCCCCCCCCCcccccccCCCCcccccccceeeeecccchhhhhcCCCCC
Q 044993 67 SNSTWEKARFGEDVIIGGIDSGICPESESFSDEEMGPIPSKWRGTCQNDDHYGVECNRKLIGIRHYNKGLISAATKRNPA 146 (713)
Q Consensus 67 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~~~~f~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 146 (713)
+...|..+++|+++.|+|.|.|+...||+..+. .-..+.+++....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~---------- 67 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHD---------- 67 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCC----------
Confidence 458899999999999999999999999998642 1122233332210
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCccccCccccccCceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHH
Q 044993 147 FDIPPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIE 226 (713)
Q Consensus 147 ~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~~g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ 226 (713)
..+....+......|||-|++-.+.......- ..|+++++++..++++... .. +...
T Consensus 68 -~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C---------~vg~~~~~~~~g~~~l~~~------------v~-~~~~ 124 (431)
T KOG3525|consen 68 -NDPEPRCDGTNENKHGTRCAGCVAARANNLTC---------GVGVAYNATIGGIRMLAGC------------VS-DAVE 124 (431)
T ss_pred -CCcccccCCCCccccCCCCCcccccccCCCcC---------CCCcccCccccceeeeeee------------cc-ccee
Confidence 11111223334689999999999987522222 4669999999999997532 11 1111
Q ss_pred HHHHHH-HcCCCeeEeecCCCCCCCCCc---chHHHHHHHHh-----cCCcEEEEecCCCCCC
Q 044993 227 AFDDAI-HDGVDIITVSLGYDNIADFLS---DGVVIGAFHAT-----MNGVLTVAASGNGGPE 280 (713)
Q Consensus 227 ai~~a~-~~gvdVIn~SlG~~~~~~~~~---~~~~~a~~~a~-----~~Gv~vV~AAGN~G~~ 280 (713)
+..... ..-+|+-..|||......-.. .....++.... .+|-+.|++.||.|..
T Consensus 125 ~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~ 187 (431)
T KOG3525|consen 125 APSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTC 187 (431)
T ss_pred cccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccc
Confidence 111111 234688888999874322222 22333444333 6788999999998843
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.41 E-value=1.8e-06 Score=77.32 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=60.2
Q ss_pred EeecCCceEEEEEEEEecCC-CceEEEEEeC--------CCc----------e-eEEEecCeEEEecCCcEEEEEEEEEe
Q 044993 617 AIPELAGSVTVTRKLKNVGT-PGTYKAQVKE--------IPG----------I-STDVEPSSLTFTHVNEEKTFKITFTL 676 (713)
Q Consensus 617 ~~~~~~~~~t~~~tvtn~~~-~~ty~~~~~~--------~~g----------~-~v~~~p~~l~~~~~g~~~~~~v~~~~ 676 (713)
++.+.....+++++|+|.++ ..+|+++... ..| . .+...|..+++ ++|++++|+|++++
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE-
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEe
Confidence 34445556889999999999 9999988651 011 1 67788899999 78999999999999
Q ss_pred ccCCCCCCCCCeEEEEEEEEcC-C-cEEEeeEE
Q 044993 677 AQNAKPNATNDYVFGELIWSDG-T-HRVRSPIA 707 (713)
Q Consensus 677 ~~~~~~~~~~~~~~G~l~~~~~-~-~~v~~P~~ 707 (713)
++. .......+++|+|.+++. . ..+++||+
T Consensus 81 p~~-~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSG-LDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GG-GHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhc-CCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 552 112458999999999974 4 48999996
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.1e-05 Score=95.48 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=55.5
Q ss_pred ceeeeecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCC-CeeEeecCCCC--CCCC--CcchHHHHHH
Q 044993 187 GTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGV-DIITVSLGYDN--IADF--LSDGVVIGAF 261 (713)
Q Consensus 187 g~~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~ 261 (713)
....-+||+|+|..|-+-.+ ....+..|+..-...-+ -+|-.||+... ...+ .-+.+.....
T Consensus 286 E~s~A~AP~A~I~lvvap~~-------------~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~ 352 (1174)
T COG4934 286 EWSHAMAPKANIDLVVAPNP-------------LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYE 352 (1174)
T ss_pred hhhhccCccCceEEEEcCCC-------------ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHH
Confidence 33455999999999888221 12222223222221111 33335666531 1122 1223444556
Q ss_pred HHhcCCcEEEEecCCCCCCCCC--------ccCCCCccEEecc
Q 044993 262 HATMNGVLTVAASGNGGPEPQT--------INNMAPWMLTVGA 296 (713)
Q Consensus 262 ~a~~~Gv~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 296 (713)
.|..+|+.+++|+|.+|....+ ....+|++++||-
T Consensus 353 qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 353 QASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 7779999999999999865433 2235799999996
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.22 E-value=6.4e-06 Score=75.00 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCCc-----ccc--cCCcccEEEeehhhHHH
Q 044993 345 KDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASGT-----FSA--SYGFLPVTKLKIKDFEA 410 (713)
Q Consensus 345 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g~-----~~~--~~~~~p~~~i~~~~g~~ 410 (713)
....|.+..+...+++|||+||+| .+|..+++++||.++|+ + ..+. +.. ....+|.++|+.++|+.
T Consensus 28 ~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~ 107 (122)
T cd04816 28 RPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAA 107 (122)
T ss_pred CccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHH
Confidence 357899888888899999999999 57999999999999999 2 2221 111 23569999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 044993 411 VLDYIKSTKDAKAF 424 (713)
Q Consensus 411 l~~~~~~~~~~~~~ 424 (713)
|+++++++.+.+++
T Consensus 108 l~~~l~~g~~v~~~ 121 (122)
T cd04816 108 LRRRLGAGETLELD 121 (122)
T ss_pred HHHHHcCCCEEEEe
Confidence 99999988765543
No 50
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.11 E-value=3.1e-06 Score=71.10 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=41.2
Q ss_pred ccccceeEEecceeeeEEEEcCHHHHHHhhCCCCeEEEEeccccccC
Q 044993 3 EARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKL 49 (713)
Q Consensus 3 ~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~V~~~~~~~~~ 49 (713)
....++.++|+..||||+++++++++++|+++|+|++|+|++.++++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 35789999999999999999999999999999999999999988763
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.99 E-value=3.5e-05 Score=69.72 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCC--ccc----ccCCcccEEEeehhhHHH
Q 044993 344 DKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASG--TFS----ASYGFLPVTKLKIKDFEA 410 (713)
Q Consensus 344 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g--~~~----~~~~~~p~~~i~~~~g~~ 410 (713)
.....|.+.... .+++|||+||+| .+|..+++++||.++|+ + ..+ .+. .....+|+++|+.++++.
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 455789888774 469999999998 47899999999999999 2 222 111 123579999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 044993 411 VLDYIKSTKDAKAF 424 (713)
Q Consensus 411 l~~~~~~~~~~~~~ 424 (713)
|++|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999988766554
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.96 E-value=7.7e-05 Score=67.92 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=61.3
Q ss_pred CCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccC--Ccc---cc--cCCcccEEEeehhhHHHHH
Q 044993 346 DASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GAS--GTF---SA--SYGFLPVTKLKIKDFEAVL 412 (713)
Q Consensus 346 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~--g~~---~~--~~~~~p~~~i~~~~g~~l~ 412 (713)
...|.+..+ +.+++|||+|++| .+|..+++++||.++|+ +.. +.+ .. ....+|+++|+.++|+.|+
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 356876555 3579999999999 68999999999999999 332 321 11 2356999999999999999
Q ss_pred HHHhcCCCcEEE
Q 044993 413 DYIKSTKDAKAF 424 (713)
Q Consensus 413 ~~~~~~~~~~~~ 424 (713)
+.++++++.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999999877654
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.93 E-value=9.6e-06 Score=71.02 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=56.5
Q ss_pred CCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEEcc--C--C----cccccCCcccEEEeehhhHHHHH
Q 044993 346 DASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMITGA--S--G----TFSASYGFLPVTKLKIKDFEAVL 412 (713)
Q Consensus 346 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~--~--g----~~~~~~~~~p~~~i~~~~g~~l~ 412 (713)
...|.+......+++||||||+| .+|..+++++||.|+|+.+ . . ........+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577777888899999999998 6899999999999999933 1 1 22344688999999999999999
Q ss_pred HHH
Q 044993 413 DYI 415 (713)
Q Consensus 413 ~~~ 415 (713)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
No 54
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.92 E-value=4.9e-05 Score=68.20 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=66.0
Q ss_pred CceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccCC--ccc-----c
Q 044993 327 KSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GASG--TFS-----A 393 (713)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~g--~~~-----~ 393 (713)
..+|++.. .....|....+...+++|||+|++| .+|..+++++||.++|| +... ... .
T Consensus 20 ~~~~~~~~---------~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~ 90 (120)
T cd02129 20 TLLPLRNL---------TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEY 90 (120)
T ss_pred cceeeecC---------CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
Confidence 35677766 4567899988888899999999999 79999999999999999 3322 111 1
Q ss_pred cCCcccEEEeehhhHHHHHHHHhcC
Q 044993 394 SYGFLPVTKLKIKDFEAVLDYIKST 418 (713)
Q Consensus 394 ~~~~~p~~~i~~~~g~~l~~~~~~~ 418 (713)
....+|+++|+.++|+.|++.+.+.
T Consensus 91 ~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 91 EKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cCCcccEEEEeHHHHHHHHHHhccC
Confidence 3467899999999999999988643
No 55
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.89 E-value=5.8e-05 Score=69.94 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCCCCCCCCC--CcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cC-C-ccc---c-cCCcccEEEeehhhH
Q 044993 344 DKDASCKPGTL--DRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-AS-G-TFS---A-SYGFLPVTKLKIKDF 408 (713)
Q Consensus 344 ~~~~~c~~~~~--~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~-g-~~~---~-~~~~~p~~~i~~~~g 408 (713)
.....|.+... +..++.|+|+|++| .+|..+++++||.++|+ + .+ + ... . ....+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34578998877 66789999999999 68999999999999999 3 33 3 122 1 124689999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 044993 409 EAVLDYIKSTKDAKAFM 425 (713)
Q Consensus 409 ~~l~~~~~~~~~~~~~i 425 (713)
+.|+++++++.+.+++|
T Consensus 122 ~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 122 MEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHcCCcEEEeC
Confidence 99999999988776653
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.89 E-value=8.8e-05 Score=66.83 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccC-C---c---ccc----cCCcccEEEeehhh
Q 044993 345 KDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GAS-G---T---FSA----SYGFLPVTKLKIKD 407 (713)
Q Consensus 345 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~-g---~---~~~----~~~~~p~~~i~~~~ 407 (713)
....|.+... ..+++|||+|++| .+|..+++++||.++|+ +.. + . +.. ....+|+++|+..+
T Consensus 20 p~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 20 PLEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred ccccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 3567986443 5689999999999 78999999999999999 322 1 1 112 23579999999999
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 044993 408 FEAVLDYIKSTKDAKAFM 425 (713)
Q Consensus 408 g~~l~~~~~~~~~~~~~i 425 (713)
|+.|++.+..+..+++.|
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999998877655
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.83 E-value=0.00011 Score=68.32 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccCC---cccc------cCCcccEEEeehhhHH
Q 044993 345 KDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GASG---TFSA------SYGFLPVTKLKIKDFE 409 (713)
Q Consensus 345 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~g---~~~~------~~~~~p~~~i~~~~g~ 409 (713)
..+.|.+.. .+++|||+|++| .+|..+++++||+++|+ +... .+.. ....+|+++|++.+|+
T Consensus 47 ~~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 47 PLDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred cccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 357798765 378999999999 68999999999999999 3222 2211 1357999999999999
Q ss_pred HHHHHHhcCCCcEE
Q 044993 410 AVLDYIKSTKDAKA 423 (713)
Q Consensus 410 ~l~~~~~~~~~~~~ 423 (713)
.|++++.++...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999998876554
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.80 E-value=6.9e-05 Score=68.41 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=61.6
Q ss_pred CCCCCCCCC--CCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCC---cccc-----cCCcccEEEeehhh
Q 044993 345 KDASCKPGT--LDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASG---TFSA-----SYGFLPVTKLKIKD 407 (713)
Q Consensus 345 ~~~~c~~~~--~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g---~~~~-----~~~~~p~~~i~~~~ 407 (713)
....|.+.. +...+++||||||+| .+|..+++++||.|+|+ + ... .... ....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345687776 677889999999987 47999999999999999 2 221 1111 34579999999999
Q ss_pred HHHHHHHHhcCCCcEE
Q 044993 408 FEAVLDYIKSTKDAKA 423 (713)
Q Consensus 408 g~~l~~~~~~~~~~~~ 423 (713)
|+.|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998766544
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.72 E-value=0.00017 Score=65.89 Aligned_cols=77 Identities=26% Similarity=0.315 Sum_probs=60.4
Q ss_pred CCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCCc------c---cc-----cCCcccEEEee
Q 044993 346 DASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASGT------F---SA-----SYGFLPVTKLK 404 (713)
Q Consensus 346 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g~------~---~~-----~~~~~p~~~i~ 404 (713)
...|.+... ..+++|||+|++| .+|..+++++||.++|+ + .++. + .. ....+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986654 5578999999999 68999999999999999 2 3321 1 11 23578999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 044993 405 IKDFEAVLDYIKSTKDAKA 423 (713)
Q Consensus 405 ~~~g~~l~~~~~~~~~~~~ 423 (713)
..+|+.|+++++.+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998766554
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.71 E-value=0.00016 Score=66.30 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCCcc---cccCCcccEEEeehhhHHHHHH
Q 044993 344 DKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASGTF---SASYGFLPVTKLKIKDFEAVLD 413 (713)
Q Consensus 344 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g~~---~~~~~~~p~~~i~~~~g~~l~~ 413 (713)
.....|.+...+..+++|||+|++| .+|..+++++||+++|+ + .++.+ ......+|.+.+ +++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4457899877666789999999999 68999999999999999 2 33321 122334566666 999999999
Q ss_pred HHhcCCCcEEE
Q 044993 414 YIKSTKDAKAF 424 (713)
Q Consensus 414 ~~~~~~~~~~~ 424 (713)
.++++...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99888765543
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.59 E-value=0.00026 Score=64.71 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=61.1
Q ss_pred CCCCCCCCCCC--cc----cccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCCcccc-------------cCCcc
Q 044993 345 KDASCKPGTLD--RK----KVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASGTFSA-------------SYGFL 398 (713)
Q Consensus 345 ~~~~c~~~~~~--~~----~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g~~~~-------------~~~~~ 398 (713)
..+.|.+.... +. ...++|+|++| .+|..+++++||+++|+ + .++.+.. ....+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 34678876543 22 37889999999 69999999999999999 3 2332221 12368
Q ss_pred cEEEeehhhHHHHHHHHhcCCCcEEE
Q 044993 399 PVTKLKIKDFEAVLDYIKSTKDAKAF 424 (713)
Q Consensus 399 p~~~i~~~~g~~l~~~~~~~~~~~~~ 424 (713)
|+++|+.++|+.|++.+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999998876654
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.49 E-value=0.00096 Score=61.12 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe--c-----hhhHHHhhcCceEEEE-c-cCCccc----
Q 044993 326 RKSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH--E-----EKGYEAAKKGAVAMIT-G-ASGTFS---- 392 (713)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~--~-----~k~~~~~~~Ga~g~i~-~-~~g~~~---- 392 (713)
....++|+.+. +.+.++...+++|||||+++ . .|..+++++||.|+|+ + .++.+.
T Consensus 22 ~~~~~lV~~g~------------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 22 EAKGEPVDAGY------------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred CeeEEEEEeCC------------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 34677887643 22233445679999999998 2 5899999999999999 2 333211
Q ss_pred -----ccCCcccEEEeehhhHHHHHHHHhcCCCc
Q 044993 393 -----ASYGFLPVTKLKIKDFEAVLDYIKSTKDA 421 (713)
Q Consensus 393 -----~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 421 (713)
.....+|++.|+.++++.|.+.++.+...
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~ 123 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERNDTL 123 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCce
Confidence 12357999999999999999999876543
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.43 E-value=0.00066 Score=64.27 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCc---ccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccC-Cc---cccc-----CCcccEEEeehh
Q 044993 345 KDASCKPGTLDR---KKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GAS-GT---FSAS-----YGFLPVTKLKIK 406 (713)
Q Consensus 345 ~~~~c~~~~~~~---~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~-g~---~~~~-----~~~~p~~~i~~~ 406 (713)
..+.|.+....+ .++.|+|+|++| .+|..+++++||.++|+ +.. +. +... ...+|+++|+..
T Consensus 49 p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 49 PLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred ccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 456898777644 789999999999 69999999999999999 332 22 2221 357999999999
Q ss_pred hHHHHHHHHhcCCC
Q 044993 407 DFEAVLDYIKSTKD 420 (713)
Q Consensus 407 ~g~~l~~~~~~~~~ 420 (713)
+|+.|..++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999988765
No 64
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.40 E-value=0.0005 Score=61.86 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCC-c---cc----ccCCcccEEEeehhhH
Q 044993 344 DKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASG-T---FS----ASYGFLPVTKLKIKDF 408 (713)
Q Consensus 344 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g-~---~~----~~~~~~p~~~i~~~~g 408 (713)
...+.|.+. +..+++|||+|++| .+|..+++++||+++|+ + .++ . +. .....+|+++++.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 455789766 56789999999999 68999999999999999 3 232 1 22 1235799999999999
Q ss_pred HHHHHHHhcC
Q 044993 409 EAVLDYIKST 418 (713)
Q Consensus 409 ~~l~~~~~~~ 418 (713)
+.|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9998887543
No 65
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.37 E-value=0.00063 Score=62.87 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCcccccCeEEEEEe----------chhhHHHhhcCceEEEE-cc---CCcc---ccc---CCcccEEEeehhhHHHHHH
Q 044993 354 LDRKKVQGRILVCLH----------EEKGYEAAKKGAVAMIT-GA---SGTF---SAS---YGFLPVTKLKIKDFEAVLD 413 (713)
Q Consensus 354 ~~~~~~~gkivl~~~----------~~k~~~~~~~Ga~g~i~-~~---~g~~---~~~---~~~~p~~~i~~~~g~~l~~ 413 (713)
+...+++|||+|++| .+|..+++++||+++|| ++ +|.+ ..+ ...+|+++|++++|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445589999999998 26899999999999999 33 3421 121 3589999999999999999
Q ss_pred HHhcC
Q 044993 414 YIKST 418 (713)
Q Consensus 414 ~~~~~ 418 (713)
.+.+.
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88654
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.72 E-value=0.41 Score=41.70 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=60.5
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEEEcCCcE
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWSDGTHR 701 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 701 (713)
...+.+++|+|.+. +..|++.........++++|..-.+ ++|++.+++|++.... . .+.+.+.|...-.+..
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~-~g~~~~~l~i~~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----P-LGDYEGSLVITTEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----C-CceEEEEEEEEECCeE
Confidence 45677888999999 9999997654334567777877667 7899999999999533 2 3456888888766668
Q ss_pred EEeeEEEE
Q 044993 702 VRSPIALK 709 (713)
Q Consensus 702 v~~P~~~~ 709 (713)
+.+|+-..
T Consensus 93 ~~i~v~a~ 100 (102)
T PF14874_consen 93 FEIPVKAE 100 (102)
T ss_pred EEEEEEEE
Confidence 88887654
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.66 E-value=0.039 Score=50.99 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=52.6
Q ss_pred CcccccCeEEEEEe-----------chh-------hHHHhhcCceEEEEcc----------CCccc--ccCCcccEEEee
Q 044993 355 DRKKVQGRILVCLH-----------EEK-------GYEAAKKGAVAMITGA----------SGTFS--ASYGFLPVTKLK 404 (713)
Q Consensus 355 ~~~~~~gkivl~~~-----------~~k-------~~~~~~~Ga~g~i~~~----------~g~~~--~~~~~~p~~~i~ 404 (713)
...+++|||||+.+ ..| ...++++||.++|+.+ .|.+. .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999987 223 6889999999999922 11111 123569999999
Q ss_pred hhhHHHHHHHHhcCCCcEEE
Q 044993 405 IKDFEAVLDYIKSTKDAKAF 424 (713)
Q Consensus 405 ~~~g~~l~~~~~~~~~~~~~ 424 (713)
.+++..|...++.+...+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999988765543
No 68
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.75 E-value=0.049 Score=52.67 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=47.6
Q ss_pred cccccCeEEEEEe-----chhhHHHhhcCceEEEEccC---------------------C-cccc---------------
Q 044993 356 RKKVQGRILVCLH-----EEKGYEAAKKGAVAMITGAS---------------------G-TFSA--------------- 393 (713)
Q Consensus 356 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~~---------------------g-~~~~--------------- 393 (713)
..+++|||+|+++ .+|..+|+++||+|+|+..+ | .+.+
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4589999999998 68999999999999999221 1 0000
Q ss_pred -cCCcccEEEeehhhHHHHHHHHhc
Q 044993 394 -SYGFLPVTKLKIKDFEAVLDYIKS 417 (713)
Q Consensus 394 -~~~~~p~~~i~~~~g~~l~~~~~~ 417 (713)
....||+.-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013588999999999999998754
No 69
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.12 E-value=0.15 Score=42.16 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=37.0
Q ss_pred ceEEEEEEEEecCC-C-ceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 623 GSVTVTRKLKNVGT-P-GTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~-~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
...+++.+|+|.+. . ...++++..|.|-++...|..+.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 46789999999997 4 56888999999988778887765448899999999999976
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.57 E-value=0.55 Score=44.15 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=52.0
Q ss_pred ceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEec-----------------------hhhHHHhhcCceEEE
Q 044993 328 SYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLHE-----------------------EKGYEAAKKGAVAMI 384 (713)
Q Consensus 328 ~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~k~~~~~~~Ga~g~i 384 (713)
.-++|+.+.. .....|....+...+++|||||+.+. .|..++++.||.|+|
T Consensus 21 tg~lVfvGyG------i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 21 TAPVVFAGYG------ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred eEeEEEecCC------cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 4577776531 12345777777788999999999652 589999999999999
Q ss_pred E-ccCCc------ccccCCcccEEEeehhhHHHHHHH
Q 044993 385 T-GASGT------FSASYGFLPVTKLKIKDFEAVLDY 414 (713)
Q Consensus 385 ~-~~~g~------~~~~~~~~p~~~i~~~~g~~l~~~ 414 (713)
+ +.... .......-..++++....+.+...
T Consensus 95 v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 9 22111 111111112666777766666654
No 71
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.46 E-value=0.23 Score=45.80 Aligned_cols=53 Identities=32% Similarity=0.327 Sum_probs=40.9
Q ss_pred CceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe-----------------chhhHHHhhcCceEEEE
Q 044993 327 KSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH-----------------EEKGYEAAKKGAVAMIT 385 (713)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----------------~~k~~~~~~~Ga~g~i~ 385 (713)
...++|+.+.. .....|...++...+++|||||+.+ ..|..+++++||.|+|+
T Consensus 22 v~gelVfvGyG------~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi 91 (137)
T cd04820 22 VEAPLVFVGYG------LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMIT 91 (137)
T ss_pred ceEeEEEecCC------cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEE
Confidence 35677776532 1234677777778899999999997 15899999999999999
No 72
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=91.64 E-value=0.36 Score=44.82 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=41.4
Q ss_pred CceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe-----------------------chhhHHHhhcCceEE
Q 044993 327 KSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH-----------------------EEKGYEAAKKGAVAM 383 (713)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----------------------~~k~~~~~~~Ga~g~ 383 (713)
...++|+.+.. .....|...++...|++|||||+.+ ..|..+++++||.|+
T Consensus 20 ~~aelVfvGyG------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gv 93 (142)
T cd04814 20 KDAPLVFVGYG------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGV 93 (142)
T ss_pred cceeeEEecCC------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEE
Confidence 45778877532 1234588788888899999999965 248999999999999
Q ss_pred EE
Q 044993 384 IT 385 (713)
Q Consensus 384 i~ 385 (713)
|+
T Consensus 94 Ii 95 (142)
T cd04814 94 LI 95 (142)
T ss_pred EE
Confidence 99
No 73
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.45 E-value=1.8 Score=38.83 Aligned_cols=54 Identities=24% Similarity=0.315 Sum_probs=39.6
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 624 SVTVTRKLKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 624 ~~t~~~tvtn~~~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
...++++|.|... +.+|++++..++++++......+++ ++|++.++.|.+.++.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 4568899999999 9999999999889999665588999 7899999999999977
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=89.35 E-value=0.42 Score=44.52 Aligned_cols=31 Identities=13% Similarity=-0.076 Sum_probs=28.0
Q ss_pred ccccCeEEEEEe-----chhhHHHhhcCceEEEEcc
Q 044993 357 KKVQGRILVCLH-----EEKGYEAAKKGAVAMITGA 387 (713)
Q Consensus 357 ~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~ 387 (713)
-+++|||+|++. ..|.+++++.||.|+||..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYs 72 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYV 72 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEec
Confidence 579999999996 7899999999999999943
No 75
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=87.84 E-value=1.9 Score=47.16 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=57.6
Q ss_pred cccccCeEEEEEe-----chhhHHHhhcCceEEEE-cc-CC--------cccccCCcccEEEeehhhHHHHHHHHhcCCC
Q 044993 356 RKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GA-SG--------TFSASYGFLPVTKLKIKDFEAVLDYIKSTKD 420 (713)
Q Consensus 356 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~-~g--------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 420 (713)
..++++|+++..| .+|...++++||.++++ +. .. ........||+.+|.+++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4578999999999 79999999999999999 33 12 1122357899999999999999987777777
Q ss_pred cEEEEeec
Q 044993 421 AKAFMTDA 428 (713)
Q Consensus 421 ~~~~i~~~ 428 (713)
.++.+..+
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 77666543
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=87.76 E-value=0.63 Score=46.66 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.3
Q ss_pred CceeeEeccccccccCcCCCCCCCCCCCC-----cccccCeEEEEEe-----chhhHHHhhcCceEEEE
Q 044993 327 KSYPLISGEDARMANATDKDASCKPGTLD-----RKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT 385 (713)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~ 385 (713)
...++||.. .|...+++ ..+++|||||+++ ..|..+|+++||+|+|+
T Consensus 45 v~g~lVyvn------------yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIi 101 (220)
T cd02121 45 VTAELVYAN------------YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVII 101 (220)
T ss_pred ceEEEEEcC------------CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEE
Confidence 356777763 45544432 5689999999987 47999999999999999
No 77
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=87.65 E-value=11 Score=34.11 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=50.1
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeC----CCce--------------------eEEEecCeEEEecCCcEEEEEEEEEec
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVKE----IPGI--------------------STDVEPSSLTFTHVNEEKTFKITFTLA 677 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~~----~~g~--------------------~v~~~p~~l~~~~~g~~~~~~v~~~~~ 677 (713)
.+++++++|+|.++ ..+|.+.+.. ..|+ -+++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 67889999999998 8999987542 1110 1233 455888 789999999999998
Q ss_pred cCCCCCCCCCeEEEEEEEEc
Q 044993 678 QNAKPNATNDYVFGELIWSD 697 (713)
Q Consensus 678 ~~~~~~~~~~~~~G~l~~~~ 697 (713)
. ..-.+.+-|.|.++.
T Consensus 105 ~----~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 K----KAFDGIILGGIYFSE 120 (121)
T ss_pred C----CCcCCEEEeeEEEEe
Confidence 7 455666777777653
No 78
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=82.07 E-value=0.91 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCCCCccEEEEeccccCCCCCCCC
Q 044993 74 ARFGEDVIIGGIDSGICPESESFS 97 (713)
Q Consensus 74 ~~~G~Gv~VgVIDtGid~~Hp~f~ 97 (713)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 589999999999999999988874
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.33 E-value=16 Score=40.29 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=56.2
Q ss_pred ceEEEEEEEEecCC-C-ceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEEEc
Q 044993 623 GSVTVTRKLKNVGT-P-GTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWSD 697 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~-~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~~~ 697 (713)
...++...+.|.|+ + ..-.+++..|.|-++.|+|..+-.-++|+++++.+|++++.. +..+.| +=+|+-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~---a~aGdY-~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED---AGAGDY-RITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC---CCCCcE-EEEEEEee
Confidence 45778889999998 4 667899999999999999987655588999999999999873 455555 55555543
No 80
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=76.35 E-value=25 Score=32.43 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=52.4
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEEE
Q 044993 623 GSVTVTRKLKNVGT--PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWS 696 (713)
Q Consensus 623 ~~~t~~~tvtn~~~--~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~~ 696 (713)
....+.+.|-|... -...++.......+++--.|+.+++ .+++.++++.++++.+ ...+++||.|++.
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-----tetGvIfG~I~Yd 138 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-----TETGVIFGNIVYD 138 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-----ccCCEEEEEEEEe
Confidence 34556666777765 3455566666667888888999999 7899999999999966 5678999999985
No 81
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=72.98 E-value=33 Score=30.73 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=45.2
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeC---CC----ceeEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEE
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVKE---IP----GISTDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELI 694 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~~---~~----g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~ 694 (713)
...+.+++|+|.++ +..+.+.+.. .. .-.+-++|..+.+ ++|+++.++| +.... ...+....=+|.
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~----~~~~~E~~yrl~ 87 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK----LPIDRESLYRLS 87 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG----S-SSS-EEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC----CCCCceEEEEEE
Confidence 44577889999997 6666666653 11 1257899999999 7899999999 66433 233333344555
Q ss_pred EE
Q 044993 695 WS 696 (713)
Q Consensus 695 ~~ 696 (713)
+.
T Consensus 88 ~~ 89 (122)
T PF00345_consen 88 FR 89 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=71.63 E-value=20 Score=39.89 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=47.0
Q ss_pred eEEEEEEEEecCC-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 624 SVTVTRKLKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 624 ~~t~~~tvtn~~~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
....+.++.|.+. +.+|+++++..++.++...++.+++ ++||+.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4668889999998 9999999999889888876558888 7899999999998865
No 83
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=67.46 E-value=7.1 Score=37.03 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=28.2
Q ss_pred CCCcccccCeEEEEEe------------------------chhhHHHhhcCceEEEE
Q 044993 353 TLDRKKVQGRILVCLH------------------------EEKGYEAAKKGAVAMIT 385 (713)
Q Consensus 353 ~~~~~~~~gkivl~~~------------------------~~k~~~~~~~Ga~g~i~ 385 (713)
++...|++||||++.+ ..|...+++.||.|+|+
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 5567799999999985 13899999999999998
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.88 E-value=72 Score=35.37 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=50.3
Q ss_pred ceEEEEEEEEecCC-CceEEEEEe-CCCceeEEEec-----CeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEE
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVK-EIPGISTDVEP-----SSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIW 695 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~-~~~g~~v~~~p-----~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~ 695 (713)
.+..+++++.|.+. ..+|.+++. .|++-...+.- +++.+ .+||+++++|.+.++.. ...+.| .=.|+-
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n---a~pG~Y-nv~I~A 358 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN---ATPGTY-NVTITA 358 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC---CCCCce-eEEEEE
Confidence 45678999999999 999999998 78776555443 34666 68999999999998762 344444 333444
Q ss_pred Ec
Q 044993 696 SD 697 (713)
Q Consensus 696 ~~ 697 (713)
..
T Consensus 359 ~s 360 (513)
T COG1470 359 SS 360 (513)
T ss_pred ec
Confidence 43
No 85
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=62.87 E-value=8.7 Score=35.70 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=66.0
Q ss_pred CceeeEeccccccccCcCCCCCCCCCCCCcccccCeEEEEEe-----chhhHHHhhcCceEEEE-c-cCC--------cc
Q 044993 327 KSYPLISGEDARMANATDKDASCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-G-ASG--------TF 391 (713)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~-~~g--------~~ 391 (713)
...++|.+ .....|.... +.....|.++|++| ..|..+++++||..+|+ + .+. ++
T Consensus 64 e~~~lV~a---------dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveM 133 (193)
T KOG3920|consen 64 ENLELVLA---------DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEM 133 (193)
T ss_pred cCcceeec---------CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHh
Confidence 34666766 5567786543 33467889999999 68999999999999999 2 221 22
Q ss_pred ccc----CCcccEEEeehhhHHHHHHHHhcCCCcEEEEeecc
Q 044993 392 SAS----YGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQ 429 (713)
Q Consensus 392 ~~~----~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 429 (713)
+.+ ...+|+.++...+|..+..-+++-...-+.|....
T Consensus 134 I~D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 134 IPDESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cCcccccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 333 47799999999998887777777666555555443
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=60.39 E-value=44 Score=28.99 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=39.6
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
......++|+|.+. ..-|++....|.. ..|.|..-.+ .+|++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45677889999999 8999998888765 4567998777 7899999999998744
No 87
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=49.89 E-value=1e+02 Score=26.83 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=35.7
Q ss_pred ceEEEEEEEEecCC-C-ceEEE-----EEeCCCce---eEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 623 GSVTVTRKLKNVGT-P-GTYKA-----QVKEIPGI---STDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~-~ty~~-----~~~~~~g~---~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
...++..+++|..+ . .+-++ .+..+ |+ .+......+++ +++++.++++++...+
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 57889999999997 5 44222 23333 55 35666777888 7899999999998866
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=47.58 E-value=67 Score=27.03 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=31.6
Q ss_pred ceEEEEEEEEecCC--CceEEEEEeCCCceeEEEecCeE-EEecCCcEEEEEEEEEec
Q 044993 623 GSVTVTRKLKNVGT--PGTYKAQVKEIPGISTDVEPSSL-TFTHVNEEKTFKITFTLA 677 (713)
Q Consensus 623 ~~~t~~~tvtn~~~--~~ty~~~~~~~~g~~v~~~p~~l-~~~~~g~~~~~~v~~~~~ 677 (713)
...+++.+|+|.|. ...+.+.+... +..+ .-..+ .| ++|++.++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 67889999999998 46666666543 2222 11122 45 678888888888774
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=46.03 E-value=72 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=23.4
Q ss_pred EEEEecCC-CceEEEEEeCCCc-eeEEEecCeEEEecCCcEEEEEEEE
Q 044993 629 RKLKNVGT-PGTYKAQVKEIPG-ISTDVEPSSLTFTHVNEEKTFKITF 674 (713)
Q Consensus 629 ~tvtn~~~-~~ty~~~~~~~~g-~~v~~~p~~l~~~~~g~~~~~~v~~ 674 (713)
++++|.|+ +.... .+...-| ..++ .+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~--~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAE--YSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEee--CCcceE-CCCCEEEEEEEC
Confidence 56788886 43332 2222223 2333 333335 789999998874
No 90
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.38 E-value=46 Score=35.68 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCCCCCCCC---CcccccCeEEEEEe-----chhhHHHhhcCceEEEE-ccCC--cccc-----cCCcccEEEeehhhH
Q 044993 345 KDASCKPGTL---DRKKVQGRILVCLH-----EEKGYEAAKKGAVAMIT-GASG--TFSA-----SYGFLPVTKLKIKDF 408 (713)
Q Consensus 345 ~~~~c~~~~~---~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~-~~~g--~~~~-----~~~~~p~~~i~~~~g 408 (713)
..++|.+..- ........++|+.| .+|..+++++|.+++|+ ++.+ .+.. ....++..+++...|
T Consensus 61 p~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 61 PLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred CccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 3456765433 13455677889988 79999999999999999 5444 2322 346789999999999
Q ss_pred HHHHHHHhcCC
Q 044993 409 EAVLDYIKSTK 419 (713)
Q Consensus 409 ~~l~~~~~~~~ 419 (713)
+.|..|.....
T Consensus 141 e~l~~~~~~~~ 151 (348)
T KOG4628|consen 141 ELLSSYAGRTE 151 (348)
T ss_pred HHHHHhhcccc
Confidence 99998865443
No 91
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=45.36 E-value=58 Score=39.32 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=35.7
Q ss_pred ceEEEEEEEEecCC-CceEEEE--EeCCCceeEEEec-------CeEEEecCCcEEEEEEEEEeccC
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQ--VKEIPGISTDVEP-------SSLTFTHVNEEKTFKITFTLAQN 679 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~--~~~~~g~~v~~~p-------~~l~~~~~g~~~~~~v~~~~~~~ 679 (713)
+..+++++|||+|. ...-.++ +..|.+- +. .| .++.+ ++||++++++++...+.
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~L 730 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEAL 730 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHHh
Confidence 56889999999998 5554444 3334221 11 12 34556 78999999999987653
No 92
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=43.75 E-value=76 Score=26.12 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=28.5
Q ss_pred eEEEecCeEEEecCCcEEEEEEEEEeccCCCCCCCCCeEEEEEEEEcC
Q 044993 651 STDVEPSSLTFTHVNEEKTFKITFTLAQNAKPNATNDYVFGELIWSDG 698 (713)
Q Consensus 651 ~v~~~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~G~l~~~~~ 698 (713)
.+++.|..+++ ..|++..|++++.... . .. ...+.|++.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~-----~-~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS-----A-KV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC-----C-Cc--cceEEEEEC
Confidence 57888999999 6899999999975433 1 11 566788754
No 93
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=38.25 E-value=33 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc
Q 044993 506 AGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 506 aALl~q~~p~~sp~~ik~~L~~T 528 (713)
+--|++.||+|++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 44678999999999999999765
No 94
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=37.73 E-value=42 Score=35.20 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=54.8
Q ss_pred eeeecCCCcEEEeeeecCCCCccCCCCCCCCC-------HHHHHHHHHHHHHcCCCeeEeecCCCCC-----------CC
Q 044993 189 AKGGSPRARVASYKVCWYSEDDHNAAHGNDCM-------EQDTIEAFDDAIHDGVDIITVSLGYDNI-----------AD 250 (713)
Q Consensus 189 ~~GvAP~A~l~~~kv~~~~~~~~~~~~gg~~~-------~~~i~~ai~~a~~~gvdVIn~SlG~~~~-----------~~ 250 (713)
++-+||-++|-+...+|...+......|...+ .+.=+.-+++|+.+|.+||+ |.|...- ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 67799999999888888654322222221111 11223446789999999996 6665521 12
Q ss_pred CCcchHHHHHHHHh-----cCCcEEEEecC
Q 044993 251 FLSDGVVIGAFHAT-----MNGVLTVAASG 275 (713)
Q Consensus 251 ~~~~~~~~a~~~a~-----~~Gv~vV~AAG 275 (713)
...||+++...+-. ..||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 34678998887544 45889999853
No 95
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.45 E-value=97 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=13.8
Q ss_pred EEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 652 TDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 652 v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
.+-.-...++ ++||+.+|+.++....
T Consensus 47 FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 47 FTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp -----EEEEE--TT-EEEEEEEESS--
T ss_pred hhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 3333445667 7899999998887654
No 96
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.11 E-value=3.2e+02 Score=26.61 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=36.4
Q ss_pred ceEEEEEEEEecCCCceEEEEEeC---C-CceeEEEecCe--EEEecCCcEEEEEEEEEecc
Q 044993 623 GSVTVTRKLKNVGTPGTYKAQVKE---I-PGISTDVEPSS--LTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 623 ~~~t~~~tvtn~~~~~ty~~~~~~---~-~g~~v~~~p~~--l~~~~~g~~~~~~v~~~~~~ 678 (713)
...+++++|-|+|+..-|.+++.. | ..+++----.+ +.--++|++.+..+++++..
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 578999999999997778787765 2 33333111111 12227799888888888744
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=32.57 E-value=20 Score=16.15 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.1
Q ss_pred cccCCC
Q 044993 442 SFSSRG 447 (713)
Q Consensus 442 ~fSS~G 447 (713)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=31.84 E-value=90 Score=37.77 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=33.8
Q ss_pred eEEEEEEEEecCC-CceEEEEE--eCCCc-----eeEEEecCeEEEecCCcEEEEEEEEEe
Q 044993 624 SVTVTRKLKNVGT-PGTYKAQV--KEIPG-----ISTDVEPSSLTFTHVNEEKTFKITFTL 676 (713)
Q Consensus 624 ~~t~~~tvtn~~~-~~ty~~~~--~~~~g-----~~v~~~p~~l~~~~~g~~~~~~v~~~~ 676 (713)
..+++++|||+|+ ...-.+.+ ..|.. ++--+--.++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999998 66665553 33421 111111235556 78999999998875
No 99
>PRK15019 CsdA-binding activator; Provisional
Probab=31.83 E-value=45 Score=31.24 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred eeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044993 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKS 523 (713)
Q Consensus 489 y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 523 (713)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34445666 68999999999999999999999876
No 100
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.53 E-value=42 Score=22.67 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=10.9
Q ss_pred chhhHHHHHHHHH
Q 044993 497 MSTPIVAGIAGLI 509 (713)
Q Consensus 497 mAaP~VAG~aALl 509 (713)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 101
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=30.29 E-value=50 Score=30.58 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=29.2
Q ss_pred eeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044993 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSA 524 (713)
Q Consensus 489 y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 524 (713)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455776 589999999999999999999998753
No 102
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.24 E-value=2e+02 Score=25.36 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=36.9
Q ss_pred eeeec-CCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCeeEeecCCC
Q 044993 189 AKGGS-PRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDGVDIITVSLGYD 246 (713)
Q Consensus 189 ~~GvA-P~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~gvdVIn~SlG~~ 246 (713)
+..-. ++++|+.+--|. +|....++.-+++..+.|+|+|-+|--..
T Consensus 30 F~~y~~~~~elvgf~~Cg------------GCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 30 FARYDDEDVELVGFFTCG------------GCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred cccCCCCCeEEEEEeeCC------------CCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 44454 578888876663 79999999999999999999999986655
No 103
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.64 E-value=63 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=28.6
Q ss_pred eeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044993 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKS 523 (713)
Q Consensus 489 y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 523 (713)
-..+.|.| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 68999999999999999999999875
No 104
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=26.01 E-value=97 Score=22.05 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc
Q 044993 505 IAGLIKTVHPDWSPAAIKSAIMTT 528 (713)
Q Consensus 505 ~aALl~q~~p~~sp~~ik~~L~~T 528 (713)
.+..|++.||+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 466789999999999999999864
No 105
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.94 E-value=58 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=23.2
Q ss_pred ceeeeccccchhhHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 044993 488 AFTAMDGTSMSTPIVAGIAG------LIKTVHPDWSPAAIKSAIM 526 (713)
Q Consensus 488 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~~sp~~ik~~L~ 526 (713)
+--.+.||=+..=.+....+ -+.+.||++++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34456677776655555432 3466699999999999984
No 106
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=25.68 E-value=71 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.6
Q ss_pred eeeeccccchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 044993 489 FTAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKSA 524 (713)
Q Consensus 489 y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 524 (713)
-..+.|.|= |++|-|++||+.+.+-..+|++|.+.
T Consensus 57 ~~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 57 KVHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 335556665 67999999999999999999998764
No 107
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=65 Score=29.96 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.3
Q ss_pred eeeccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 044993 490 TAMDGTSMSTPIVAGIAGLIKTVHPDWSPAAIKS 523 (713)
Q Consensus 490 ~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 523 (713)
..+.|=|= |++|.|.+|++++.+-..+|++|..
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 34445553 6899999999999999999999753
No 108
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.04 E-value=2e+02 Score=30.61 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=52.8
Q ss_pred ecCCCcEEEeeeecCCCCccCCCCCCCCCHHHHHHHHHHHHHcC----CCeeEeecCCCCCCC---CCcchHHHHHHHHh
Q 044993 192 GSPRARVASYKVCWYSEDDHNAAHGNDCMEQDTIEAFDDAIHDG----VDIITVSLGYDNIAD---FLSDGVVIGAFHAT 264 (713)
Q Consensus 192 vAP~A~l~~~kv~~~~~~~~~~~~gg~~~~~~i~~ai~~a~~~g----vdVIn~SlG~~~~~~---~~~~~~~~a~~~a~ 264 (713)
-.|.+++..|.+.-.+ ......|++||..+.+.+ +|||-+-=||++-.+ |.+..+.+++.
T Consensus 38 r~~~~~~~~~p~~vQG----------~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~--- 104 (319)
T PF02601_consen 38 RNPIVEIILYPASVQG----------EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIA--- 104 (319)
T ss_pred hCCCcEEEEEeccccc----------cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHH---
Confidence 4677888887776543 567888999999998865 999999999884222 12223444443
Q ss_pred cCCcEEEEecCCCC
Q 044993 265 MNGVLTVAASGNGG 278 (713)
Q Consensus 265 ~~Gv~vV~AAGN~G 278 (713)
..-+.|+.+-|-+-
T Consensus 105 ~~~~PvisaIGHe~ 118 (319)
T PF02601_consen 105 ASPIPVISAIGHET 118 (319)
T ss_pred hCCCCEEEecCCCC
Confidence 56799999999875
No 109
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=23.99 E-value=4.3e+02 Score=22.04 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=31.5
Q ss_pred ceEEEEEEEEecCC-CceEEEEEeCCCceeEEEecCeEEEecCCcEEEEEEEE
Q 044993 623 GSVTVTRKLKNVGT-PGTYKAQVKEIPGISTDVEPSSLTFTHVNEEKTFKITF 674 (713)
Q Consensus 623 ~~~t~~~tvtn~~~-~~ty~~~~~~~~g~~v~~~p~~l~~~~~g~~~~~~v~~ 674 (713)
....+.++++|.|. ..++++.-..-. .-.|.++++ ++|++.++...+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEee
Confidence 44588899999997 777776652111 123566777 678888777766
No 110
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=22.31 E-value=8.5e+02 Score=30.07 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCCceEEeecCCceEEEEEEEEecC-C-CceEEEEEe-----CCCceeEEEecCeEEEecCCcE-EEEEEEEEe
Q 044993 611 FNYPSIAIPELAGSVTVTRKLKNVG-T-PGTYKAQVK-----EIPGISTDVEPSSLTFTHVNEE-KTFKITFTL 676 (713)
Q Consensus 611 ln~ps~~~~~~~~~~t~~~tvtn~~-~-~~ty~~~~~-----~~~g~~v~~~p~~l~~~~~g~~-~~~~v~~~~ 676 (713)
+..+++.+.+..+ +++++|+-.+ + ..+-++.+. +-.|.+.....-+|+| ++||+ ++++|.+.-
T Consensus 404 Fe~~~Y~V~En~G--tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IID 474 (928)
T TIGR00845 404 FEPGHYTCLENCG--TVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIID 474 (928)
T ss_pred ecCCeEEEeecCc--EEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEcc
Confidence 3445566665333 4556665555 3 445555443 3356777777789999 67775 455554433
No 111
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=20.09 E-value=5.2e+02 Score=21.58 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=34.1
Q ss_pred CceEEeecCCceEEEEEEEEecCC-CceEEEEEe-----CCCceeEEEecCeEEEecCCcEEEEEEEEEecc
Q 044993 613 YPSIAIPELAGSVTVTRKLKNVGT-PGTYKAQVK-----EIPGISTDVEPSSLTFTHVNEEKTFKITFTLAQ 678 (713)
Q Consensus 613 ~ps~~~~~~~~~~t~~~tvtn~~~-~~ty~~~~~-----~~~g~~v~~~p~~l~~~~~g~~~~~~v~~~~~~ 678 (713)
-+++++.+..+ +++++|.-.+. ....++.+. +-.|....-...+|+| ++|| .+-+|++.+.+
T Consensus 8 ~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F-~~ge-~~k~i~i~i~d 75 (90)
T smart00237 8 QPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTF-PPGE-TEKCIRIKIID 75 (90)
T ss_pred CCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEE-CCCC-EEEEEEEEEeC
Confidence 34666666433 45555555555 455555443 2345666666788999 5666 23344444433
Done!