BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044998
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 9 KEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDE 68
+++GPI K L ++I G AN+F++T + P R + G ++ +
Sbjct: 41 QQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGPNALATQMGEI 100
Query: 69 HKRLRGALESFFKPEVLKQYVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLI 128
H+ R L F P L Y+ KMD ++ +L W +V P ++ +TF++ ++L
Sbjct: 101 HRSRRKILYQAFLPRTLDSYLPKMDGIVQGYLE-QWGKANEVIWYPQLRRMTFDVAATLF 159
Query: 129 FGIEQGATINAFIELFQDIMDGIVSIPINCPFTRFNR 165
G E+ + F+ + G+ S+PI P T F +
Sbjct: 160 MG-EKVSQNPQLFPWFETYIQGLFSLPIPLPNTLFGK 195
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 162 RFNRGLKIHQSSSVAFRGGPWICPGHEFTRIENLATIHHLVT 203
RF+ +K ++ S+AF GGP C G R+E + L T
Sbjct: 344 RFDITVK-REAPSIAFGGGPHFCLGTALARLELTEAVAALAT 384
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 162 RFNRGLKIHQSSSVAFRGGPWICPGHEFTRIENLATIHHLVT 203
RF+ +K ++ S+AF GGP C G R+E + L T
Sbjct: 334 RFDITVK-REAPSIAFGGGPHFCLGTALARLELTEAVAALAT 374
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 29 GQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVD 67
G+A K Y DD A P L + I RSI+G+ +D
Sbjct: 578 GEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLD 616
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 119 LTFNIPSSLIFGIEQGATINAFIELFQDIMD 149
+T N+P + G+ G+T N FI+ + D
Sbjct: 26 VTDNVPQGAVIGVGTGSTANCFIDALAAVKD 56
>pdb|2XHG|A Chain A, Crystal Structure Of The Epimerization Domain From The
Initiation Module Of Tyrocidine Biosynthesis
Length = 466
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 63 GLGVDEHKRL-----RGALESFFKPEVLKQYVGKMDEDIRKHL 100
G+G D K + RG+L +PEV Y+G+ D D+R L
Sbjct: 340 GIGYDILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTEL 382
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 172 SSSVAFRGGPWICPGHEFTRIE 193
S+S+A+ GP +CPG R+E
Sbjct: 353 SASLAYGRGPHVCPGVSLARLE 374
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 172 SSSVAFRGGPWICPGHEFTRIE 193
S+S+A+ GP +CPG R+E
Sbjct: 353 SASLAYGRGPHVCPGVSLARLE 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,698,702
Number of Sequences: 62578
Number of extensions: 267509
Number of successful extensions: 602
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 12
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)