Query 044998
Match_columns 221
No_of_seqs 175 out of 1919
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 08:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02500 cytochrome P450 90B1 100.0 1.9E-34 4.1E-39 233.6 19.6 130 3-133 67-197 (490)
2 PLN02774 brassinosteroid-6-oxi 100.0 2.6E-34 5.6E-39 231.2 19.8 131 2-133 54-185 (463)
3 PLN03141 3-epi-6-deoxocathaste 100.0 3E-34 6.5E-39 230.3 19.4 131 2-133 35-166 (452)
4 PLN02196 abscisic acid 8'-hydr 100.0 5.3E-34 1.2E-38 229.3 19.1 130 2-133 59-188 (463)
5 PLN02738 carotene beta-ring hy 100.0 2.8E-33 6.1E-38 230.8 17.6 129 3-133 156-289 (633)
6 PLN02302 ent-kaurenoic acid ox 100.0 2.8E-32 6.1E-37 221.3 19.4 130 2-133 70-202 (490)
7 PF00067 p450: Cytochrome P450 100.0 6.3E-33 1.4E-37 222.7 15.3 129 2-132 24-161 (463)
8 PTZ00404 cytochrome P450; Prov 100.0 5.6E-33 1.2E-37 224.8 12.9 129 2-132 52-186 (482)
9 KOG0156 Cytochrome P450 CYP2 s 100.0 1.9E-32 4.2E-37 218.2 15.4 131 2-133 50-188 (489)
10 PLN02987 Cytochrome P450, fami 100.0 8.8E-32 1.9E-36 216.4 19.4 128 3-133 59-187 (472)
11 KOG0158 Cytochrome P450 CYP3/C 100.0 5.3E-33 1.2E-37 219.2 10.6 127 7-134 61-194 (499)
12 PLN02290 cytokinin trans-hydro 100.0 5.7E-32 1.2E-36 220.5 16.5 127 4-132 86-219 (516)
13 PLN02687 flavonoid 3'-monooxyg 100.0 5.8E-32 1.3E-36 220.3 16.5 130 2-132 57-193 (517)
14 KOG0157 Cytochrome P450 CYP4/C 100.0 1.1E-32 2.3E-37 222.6 12.1 128 2-130 61-192 (497)
15 KOG0159 Cytochrome P450 CYP11/ 100.0 7.8E-32 1.7E-36 209.2 16.2 129 3-132 78-220 (519)
16 PLN02394 trans-cinnamate 4-mon 100.0 4.9E-32 1.1E-36 220.3 15.5 130 2-132 54-192 (503)
17 PLN02183 ferulate 5-hydroxylas 100.0 6.8E-32 1.5E-36 219.9 15.8 129 2-132 59-193 (516)
18 PLN03234 cytochrome P450 83B1; 100.0 1.7E-31 3.6E-36 217.0 16.7 130 2-132 52-189 (499)
19 PLN02971 tryptophan N-hydroxyl 100.0 2.3E-31 5E-36 217.7 16.7 129 3-132 83-220 (543)
20 PLN00110 flavonoid 3',5'-hydro 100.0 3.8E-31 8.2E-36 214.7 17.0 130 2-132 54-191 (504)
21 PLN02966 cytochrome P450 83A1 100.0 2.3E-31 4.9E-36 216.2 14.9 130 2-132 53-190 (502)
22 PLN02936 epsilon-ring hydroxyl 100.0 2.1E-30 4.6E-35 209.8 17.9 130 2-133 40-175 (489)
23 PLN02648 allene oxide synthase 100.0 2.6E-31 5.6E-36 212.9 12.4 129 2-133 45-192 (480)
24 PLN00168 Cytochrome P450; Prov 100.0 2.7E-30 5.8E-35 210.7 17.4 130 2-132 61-198 (519)
25 PLN02655 ent-kaurene oxidase 100.0 2.1E-30 4.6E-35 208.8 16.0 131 2-132 23-162 (466)
26 PLN02169 fatty acid (omega-1)- 100.0 7.5E-30 1.6E-34 206.8 15.4 129 3-132 58-195 (500)
27 PLN03112 cytochrome P450 famil 100.0 1.9E-29 4.1E-34 205.6 16.6 131 2-132 55-192 (514)
28 PLN03018 homomethionine N-hydr 100.0 4.5E-28 9.8E-33 197.5 15.3 130 3-132 66-203 (534)
29 PLN03195 fatty acid omega-hydr 100.0 8.9E-28 1.9E-32 195.9 14.9 128 4-132 54-190 (516)
30 PLN02426 cytochrome P450, fami 100.0 2.1E-27 4.5E-32 192.5 15.6 127 3-133 65-202 (502)
31 KOG0684 Cytochrome P450 [Secon 100.0 2.3E-27 5E-32 180.8 13.9 129 2-130 55-185 (486)
32 COG2124 CypX Cytochrome P450 [ 99.9 2.3E-26 4.9E-31 182.1 14.0 129 4-135 28-163 (411)
33 PF09201 SRX: SRX; InterPro: 76.0 2.4 5.3E-05 28.1 2.1 22 183-204 19-40 (148)
34 PF12444 Sox_N: Sox developmen 65.9 5.2 0.00011 24.3 1.8 21 192-212 60-80 (84)
35 PF02663 FmdE: FmdE, Molybdenu 48.7 15 0.00033 24.4 2.0 23 181-203 4-26 (131)
36 PF09926 DUF2158: Uncharacteri 48.5 20 0.00043 19.7 2.1 18 11-28 3-20 (53)
37 KOG3506 40S ribosomal protein 39.2 13 0.00029 20.3 0.5 10 176-185 13-22 (56)
38 PF12385 Peptidase_C70: Papain 38.8 45 0.00098 23.1 3.0 28 2-29 99-131 (166)
39 COG4471 Uncharacterized protei 38.3 24 0.00052 21.6 1.5 34 6-39 20-53 (90)
40 PRK02302 hypothetical protein; 37.6 27 0.00059 21.5 1.7 34 6-39 21-54 (89)
41 PF07886 BA14K: BA14K-like pro 34.7 33 0.00072 16.4 1.4 18 168-185 14-31 (31)
42 PRK02886 hypothetical protein; 34.3 33 0.00072 21.0 1.7 34 6-39 19-52 (87)
43 PHA03162 hypothetical protein; 32.4 40 0.00087 22.3 1.9 24 178-201 2-25 (135)
44 COG5329 Phosphoinositide polyp 32.1 29 0.00062 29.3 1.5 22 2-23 297-318 (570)
45 PF08492 SRP72: SRP72 RNA-bind 26.5 27 0.00057 19.7 0.3 8 158-165 43-50 (59)
46 PF09902 DUF2129: Uncharacteri 26.0 56 0.0012 19.2 1.6 34 6-39 15-48 (71)
47 PF13625 Helicase_C_3: Helicas 24.5 49 0.0011 21.8 1.4 36 2-39 78-113 (129)
48 PF10079 DUF2317: Uncharacteri 24.5 43 0.00094 28.4 1.4 33 50-83 218-250 (542)
49 PF08780 NTase_sub_bind: Nucle 24.4 1.6E+02 0.0034 19.4 3.7 57 32-90 46-105 (124)
50 PF15442 DUF4629: Domain of un 24.3 32 0.0007 23.4 0.5 10 180-189 127-136 (150)
51 PF13893 RRM_5: RNA recognitio 24.2 56 0.0012 17.5 1.4 34 4-37 1-38 (56)
52 COG0445 GidA Flavin-dependent 22.7 39 0.00084 28.7 0.7 10 177-186 267-276 (621)
53 COG2191 Formylmethanofuran deh 21.8 97 0.0021 22.4 2.5 24 179-202 21-44 (206)
54 PTZ00218 40S ribosomal protein 20.5 43 0.00094 18.4 0.4 10 176-185 11-20 (54)
No 1
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=1.9e-34 Score=233.59 Aligned_cols=130 Identities=20% Similarity=0.333 Sum_probs=111.3
Q ss_pred hhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhcCCH
Q 044998 3 GFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESFFKP 82 (221)
Q Consensus 3 ~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (221)
++.+++++||++|++++++.++|+++||+++++||.+++..|...++.....++|..+++.++|+.|+++|+++.+.|++
T Consensus 67 ~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~ 146 (490)
T PLN02500 67 FMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYPRSIGGILGKWSMLVLVGDMHRDMRSISLNFLSH 146 (490)
T ss_pred HHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCchHHHHHhCcccccccCCHHHHHHHHHHHHhcCh
Confidence 57788999999999999999999999999999999988777865554444445664467888999999999999999999
Q ss_pred HHHHH-hHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 83 EVLKQ-YVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
.+++. +.+.+.+.+...++. |..++.+|+.+.+..++++++++++||.+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~vi~~~~fg~~~ 197 (490)
T PLN02500 147 ARLRTHLLKEVERHTLLVLDS-WKENSTFSAQDEAKKFTFNLMAKHIMSMDP 197 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCEEehHHHHHHHHHHHHHHHhCCCC
Confidence 99887 577888888888887 876777999999999999999999999753
No 2
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=2.6e-34 Score=231.22 Aligned_cols=131 Identities=23% Similarity=0.392 Sum_probs=112.9
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhcCC
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESFFK 81 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~ 81 (221)
.++.+++++||++|++++++.++++++||+++++++.++...+.+++......++|..+++..+|+.|+.+|+++.++|+
T Consensus 54 ~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~lg~~~~~~~~g~~w~~~R~~l~~~~~ 133 (463)
T PLN02774 54 DFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDILGTCNIAAVHGSTHRYMRGSLLSLIS 133 (463)
T ss_pred HHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHhCccchhhcCCHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999988777775555444445666557778899999999999999999
Q ss_pred HHHHHH-hHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 82 PEVLKQ-YVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+..++. +.+.+.+.++++++. |..++++|+.+.+..+++++++++++|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~ 185 (463)
T PLN02774 134 PTMIRDHLLPKIDEFMRSHLSG-WDGLKTIDIQEKTKEMALLSALKQIAGTLS 185 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hCCCCCEEeeHHHHHHHHHHHHHHHcCCCC
Confidence 999886 789999999999988 876678999999999999999999998653
No 3
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=3e-34 Score=230.32 Aligned_cols=131 Identities=23% Similarity=0.367 Sum_probs=112.1
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhcCC
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESFFK 81 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~ 81 (221)
.|+.++.++||+||++++++.++|+++||++++++|.+++..+++.+......++|..+++.++|+.|+++|+++.+.|+
T Consensus 35 ~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~ 114 (452)
T PLN03141 35 SFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYPKSLTELMGKSSILLINGSLQRRVHGLIGAFLK 114 (452)
T ss_pred HHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCchhHHHHhCcccccccCcHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999998877777655444556677657888899999999999999998
Q ss_pred HHHHHH-hHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 82 PEVLKQ-YVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+..+.. ..+.+.+.+++.++. |..++.+|+.+.+..++++++++++||.+.
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~~~~~G~~~ 166 (452)
T PLN03141 115 SPHLKAQITRDMERYVSESLDS-WRDDPPVLVQDETKKIAFEVLVKALISLEP 166 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccCCCCEEhHHHHHHHHHHHHHHHHcCCCc
Confidence 877766 467888888888887 876678999999999999999999999653
No 4
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=5.3e-34 Score=229.33 Aligned_cols=130 Identities=27% Similarity=0.412 Sum_probs=113.2
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhcCC
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESFFK 81 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~ 81 (221)
.++.+++++||+++++++++.++|+++||+++++|+.++...+.+.+.......+|..+++.++|+.|+++|+++.+.|+
T Consensus 59 ~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~l~~~~g~~w~~~Rk~l~~~f~ 138 (463)
T PLN02196 59 VFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFPASKERMLGKQAIFFHQGDYHAKLRKLVLRAFM 138 (463)
T ss_pred HHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCchHHHHHcCcccccccCcHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999999988777776544433344566557888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 82 PEVLKQYVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+++++.+.+.+.+.+.++++. |. ++.+|+.+.+..+++++++.++||.+.
T Consensus 139 ~~~l~~~~~~i~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~v~~~~~fG~~~ 188 (463)
T PLN02196 139 PDAIRNMVPDIESIAQESLNS-WE-GTQINTYQEMKTYTFNVALLSIFGKDE 188 (463)
T ss_pred hHHHHHHHHHHHHHHHHHHHc-CC-CCeEEeHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998 86 457899999999999999999999764
No 5
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=2.8e-33 Score=230.77 Aligned_cols=129 Identities=12% Similarity=0.164 Sum_probs=108.3
Q ss_pred hhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHH-HHHcCCCcccccChhHHHHHHHHHHhcCC
Q 044998 3 GFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLI-RRIYGERSITGLGVDEHKRLRGALESFFK 81 (221)
Q Consensus 3 ~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~R~~~~~~f~ 81 (221)
.+.+++++||||+++++++.++|+++||+.+++||.++...|.+...... ....| .+++..+|+.|+.+|+++.+.|+
T Consensus 156 ~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g-~~l~~~dge~wr~rRr~l~p~Fs 234 (633)
T PLN02738 156 PLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMG-KGLIPADGEIWRVRRRAIVPALH 234 (633)
T ss_pred HHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccC-CceecCCcHHHHHHHHhccHhhh
Confidence 46789999999999999888999999999999999876666654433222 22334 57888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccc----cCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 82 PEVLKQYVGKMDEDIRKHLNMHW----HGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
...++.+.+.+.+.++++++. + ..++++|+.+.+..+++|+|+.++||.+.
T Consensus 235 ~~~v~~l~~~i~~~v~~L~~~-L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~ 289 (633)
T PLN02738 235 QKYVAAMISLFGQASDRLCQK-LDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDF 289 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999988876 5 24668999999999999999999999653
No 6
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=2.8e-32 Score=221.27 Aligned_cols=130 Identities=27% Similarity=0.421 Sum_probs=110.2
Q ss_pred hhhhHHhhhcCC--ceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhc
Q 044998 2 NGFKIELKEYGP--ISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESF 79 (221)
Q Consensus 2 ~~~~~~~~~yG~--v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~ 79 (221)
+++.+++++||+ ++++++++.++|+++||+++++|+.++ ..|.++++......+|..++...+|+.|+++|+++.+.
T Consensus 70 ~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~~~~~~~g~~~~~~~~g~~w~~~R~~~~~~ 148 (490)
T PLN02302 70 SFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPESTVELIGRKSFVGITGEEHKRLRRLTAAP 148 (490)
T ss_pred HHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCchhHHHHhccccccccCcHHHHHHHHHHHhc
Confidence 367889999997 799999999999999999999999875 55655554333345665556778999999999999999
Q ss_pred CC-HHHHHHhHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 80 FK-PEVLKQYVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 80 f~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
|+ ++.++.+.+.+.+.+++.++. |...+.+|+.+.+..++++++++++||.+.
T Consensus 149 f~~~~~l~~~~~~i~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~vi~~~~~G~~~ 202 (490)
T PLN02302 149 VNGPEALSTYIPYIEENVKSCLEK-WSKMGEIEFLTELRKLTFKIIMYIFLSSES 202 (490)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCEehHHHHHHHHHHHHHHHHcCCCC
Confidence 95 788999999999999999998 876677999999999999999999999764
No 7
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=6.3e-33 Score=222.70 Aligned_cols=129 Identities=16% Similarity=0.269 Sum_probs=107.2
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh-HHH---HHcCCCcccccChhHHHHHHHHHH
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS-LIR---RIYGERSITGLGVDEHKRLRGALE 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~-~~~---~~~g~~~~~~~~g~~~~~~R~~~~ 77 (221)
+++.+++++|||||++++++.++|+|+||+++++|+.++...++..+.. ... ...+..+++..+|+.|+.+|+++.
T Consensus 24 ~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~~ 103 (463)
T PF00067_consen 24 EFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRGPFGGKGLFFSDGERWRRQRRLLA 103 (463)
T ss_dssp HHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHHHHTTTSSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4678999999999999999999999999999999999887777665322 222 123346889999999999999999
Q ss_pred hcCCHH-HHHHhHHHHHHHHHHHHhcccc----CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPE-VLKQYVGKMDEDIRKHLNMHWH----GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~-~~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+.|+.. .+ .+.+.+.+.++++++. |. ..+.+|+.+.++.+++++++.++||.+
T Consensus 104 ~~~~~~~~~-~~~~~i~~~~~~l~~~-l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~~ 161 (463)
T PF00067_consen 104 PAFSSKKIL-KLEPLIDEEAEELIDQ-LRKKAGSSGPVDLFDWLRRFALDVIGRVLFGKD 161 (463)
T ss_dssp HHHSHHHHH-HHHHHHHHHHHHHHHH-HHHTTTSESEEEHHHHHHHHHHHHHHHHHHSSH
T ss_pred ccccccccc-cccccccccccccccc-ccccccccceeeeecccccccccccccccccce
Confidence 999988 55 8888888888888776 52 233699999999999999999999976
No 8
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=5.6e-33 Score=224.76 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=107.3
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh-HH-HHHcCCCcccccChhHHHHHHHHHHhc
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS-LI-RRIYGERSITGLGVDEHKRLRGALESF 79 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~-~~-~~~~g~~~~~~~~g~~~~~~R~~~~~~ 79 (221)
.++.+++++|||+|++++++.++|+++||+++++|+.++...|..+... .. ...+| .+++.++|+.|+++|+++.+.
T Consensus 52 ~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~~~~~~-~~l~~~~g~~w~~~Rk~~~~~ 130 (482)
T PTZ00404 52 RDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIKHGTFY-HGIVTSSGEYWKRNREIVGKA 130 (482)
T ss_pred HHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceeeeeccC-CceeccChHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998755555433211 11 12234 578889999999999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHhcccc----CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 80 FKPEVLKQYVGKMDEDIRKHLNMHWH----GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
|++++++.+.+.+.+.+.++++. |. .++.+|+.+.+..+++|++++++||.+
T Consensus 131 f~~~~l~~~~~~i~~~~~~l~~~-l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~ 186 (482)
T PTZ00404 131 MRKTNLKHIYDLLDDQVDVLIES-MKKIESSGETFEPRYYLTKFTMSAMFKYIFNED 186 (482)
T ss_pred HhhhccccHHHHHHHHHHHHHHH-HHHHHhcCCccCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998886 52 355689999999999999999999965
No 9
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-32 Score=218.18 Aligned_cols=131 Identities=21% Similarity=0.251 Sum_probs=106.3
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh--HHHHHc-CCCccccc-ChhHHHHHHHHHH
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS--LIRRIY-GERSITGL-GVDEHKRLRGALE 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~--~~~~~~-g~~~~~~~-~g~~~~~~R~~~~ 77 (221)
..++++.++|||++.+++|..++|+++|+++++|+|++++..|++++.. ....+. +..++..+ +|+.|+.+||+..
T Consensus 50 ~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~ 129 (489)
T KOG0156|consen 50 RSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKYLSYGGKGIVFAPYGDYWREMRRFAL 129 (489)
T ss_pred HHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHHhcCCCCceEeCCCcHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999877642 223333 44567665 8999999999866
Q ss_pred h-cCCHHHHHHhHHHHHHHHHHHHhccccC--C-CeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 78 S-FFKPEVLKQYVGKMDEDIRKHLNMHWHG--K-QKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 78 ~-~f~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
. .++...+++....-.++++.+++. +.. . .++|+.+.+..++.++|++++||.+.
T Consensus 130 ~~L~~~~~~~~~~~~R~~E~~~l~~~-l~~~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf 188 (489)
T KOG0156|consen 130 TELRSFGRGKSFMEIREEEVDELVKK-LSKSKKGEPVDLSELLDLLVGNVICRMLFGRRF 188 (489)
T ss_pred HHhcChhhhhhhHHHHHHHHHHHHHH-HHhcCCCceeeHHHHHHHHHHHHHHHHHhCCcc
Confidence 5 788888887655557777777765 542 2 68999999999999999999999653
No 10
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=8.8e-32 Score=216.38 Aligned_cols=128 Identities=21% Similarity=0.382 Sum_probs=102.6
Q ss_pred hhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHHHHHHHhcCCH
Q 044998 3 GFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRLRGALESFFKP 82 (221)
Q Consensus 3 ~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (221)
++.+++++||+++++++++.++|+++||+++++++.++...|..++......++|..+++.++|+.|+++|+++.+.++.
T Consensus 59 ~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~ 138 (472)
T PLN02987 59 FIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGNLHKKMHSLTMSFANS 138 (472)
T ss_pred HHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcHHHHHHhCcccccccCcHHHHHHHHHHHHhcCh
Confidence 56789999999999999999999999999999999988888865554445566775678888999999999998765555
Q ss_pred HHHHHhH-HHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 83 EVLKQYV-GKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+.++.+. ..+.+.+...++. |. +++++.+.+..++++++++++||.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~--~~v~~~~~~~~~t~~vi~~~~fg~~~ 187 (472)
T PLN02987 139 SIIKDHLLLDIDRLIRFNLDS-WS--SRVLLMEEAKKITFELTVKQLMSFDP 187 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hc--cceehHHHHHHHHHHHHHHHHcCCCC
Confidence 5555543 2355555666666 64 46899999999999999999999764
No 11
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-33 Score=219.19 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=102.6
Q ss_pred HhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeec--chhH-HHHHcCCCcccccChhHHHHHHHHHHhcCCHH
Q 044998 7 ELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQ--QPSL-IRRIYGERSITGLGVDEHKRLRGALESFFKPE 83 (221)
Q Consensus 7 ~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~--~~~~-~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~~~ 83 (221)
...+|||++.+..+..|.++|+||+.+++|+.+....|.++ .... ...-.+..+++.++|+.|+++|..++|.|++.
T Consensus 61 ~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~ 140 (499)
T KOG0158|consen 61 IYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLSPTFTSG 140 (499)
T ss_pred HHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhccccchh
Confidence 33444999999999999999999999999999887888662 2110 01012224688999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhccccC-C---CeeeeHHHHHHHHHHHHHHHHcCCCCh
Q 044998 84 VLKQYVGKMDEDIRKHLNMHWHG-K---QKVAVMPLMKSLTFNIPSSLIFGIEQG 134 (221)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~-~---~~~d~~~~~~~~~~~vi~~~~~g~~~~ 134 (221)
+++.+.+.|++++.++++- +.. . ..+++.+.+..+++|||++++||.+.+
T Consensus 141 kmk~m~~t~~~~~~~l~~~-l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~ 194 (499)
T KOG0158|consen 141 KLKKMFPTMEEVGDELVRH-LRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLDAN 194 (499)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhhcccCCccHHHHHHHHHHHHHhHhhcccchh
Confidence 9999999999999988864 432 1 378899999999999999999997743
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=5.7e-32 Score=220.52 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=105.8
Q ss_pred hhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh--HHHHHcCCCcccccChhHHHHHHHHHHhcCC
Q 044998 4 FKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS--LIRRIYGERSITGLGVDEHKRLRGALESFFK 81 (221)
Q Consensus 4 ~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~ 81 (221)
+.+++++|||+|++++++.++|+++||++++++|.++...+...+.. .....+| .+++.++|+.|+++|+++.+.|+
T Consensus 86 ~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~~~~~~r~~~~~~~~~~~~g-~~l~~~~g~~Wk~~Rk~~~~~f~ 164 (516)
T PLN02290 86 YVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKYNTVTGKSWLQQQGTKHFIG-RGLLMANGADWYHQRHIAAPAFM 164 (516)
T ss_pred HHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcCCCCCCCcchhhhHHHHHhc-CCccccCchHHHHHHhhcccccC
Confidence 56788999999999999999999999999999998764333322221 1233456 57888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccc----CC-CeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 82 PEVLKQYVGKMDEDIRKHLNMHWH----GK-QKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~----~~-~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+++++.+.+.+.+.++++++. |. .+ .++|+.+.+..++++++++++||.+
T Consensus 165 ~~~l~~~~~~i~~~~~~l~~~-l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~ 219 (516)
T PLN02290 165 GDRLKGYAGHMVECTKQMLQS-LQKAVESGQTEVEIGEYMTRLTADIISRTEFDSS 219 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCceEEhHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999998887 63 23 4789999999999999999999965
No 13
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=5.8e-32 Score=220.31 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=107.3
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHc---CCCcccccChhHHHHHHHHHH-
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIY---GERSITGLGVDEHKRLRGALE- 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~g~~~~~~R~~~~- 77 (221)
+++.+++++||++|++++++.++|+++||++++++|.++...|.++........+ +..+++..+|+.|+++|+++.
T Consensus 57 ~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~ 136 (517)
T PLN02687 57 HTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAV 136 (517)
T ss_pred HHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998876677654332222222 223466678999999999998
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhcccc---CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHWH---GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++|++++++++.+.+.+.+.++++. |. .++++|+.+.+..+++|+++.++||.+
T Consensus 137 ~~fs~~~l~~~~~~i~~~~~~l~~~-l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 193 (517)
T PLN02687 137 HLFSAKALDDFRHVREEEVALLVRE-LARQHGTAPVNLGQLVNVCTTNALGRAMVGRR 193 (517)
T ss_pred HhCCHHHHHHhHHHHHHHHHHHHHH-HHHhcCCCceeHHHHHHHHHHHHHHHHHhCcc
Confidence 7999999999999999999998876 63 456799999999999999999999954
No 14
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=222.57 Aligned_cols=128 Identities=22% Similarity=0.242 Sum_probs=107.7
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCe--EeecchhHHHHHcCCCcccccChhHHHHHHHHHHhc
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNA--LANQQPSLIRRIYGERSITGLGVDEHKRLRGALESF 79 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~--~~~~~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~ 79 (221)
.|+.++..+||++|+.++++.++|+++||+.+++|+.+.... +.+.++..+.+++|. |+++++|+.|+++|+++.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~~~~lG~-gll~~~g~~W~~~Rk~~~~~ 139 (497)
T KOG0157|consen 61 DFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESLKPWLGD-GLLFSDGEKWHKHRKLLTPA 139 (497)
T ss_pred HHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHHHHHhcC-ccccCCchHHHHHHhhccHh
Confidence 477899999999999999999999999999999999643333 344455577899996 99898999999999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHhc-cccC-CCeeeeHHHHHHHHHHHHHHHHcC
Q 044998 80 FKPEVLKQYVGKMDEDIRKHLNM-HWHG-KQKVAVMPLMKSLTFNIPSSLIFG 130 (221)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~d~~~~~~~~~~~vi~~~~~g 130 (221)
|+.+.++++...+.+.+..++.. .+.. ++.+|+.+.++++++|+++++++|
T Consensus 140 f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G 192 (497)
T KOG0157|consen 140 FHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMG 192 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcC
Confidence 99999999888888877775553 1222 333999999999999999999999
No 15
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-32 Score=209.25 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=103.3
Q ss_pred hhhHHhhhcCCceeec-cCCcceEEEECcccchhccccCCCeE-ee-cchh--HHHHHcC-CCcccccChhHHHHHHHHH
Q 044998 3 GFKIELKEYGPISKLS-LLVTPTVYIYGQAANKFVYTCDDNAL-AN-QQPS--LIRRIYG-ERSITGLGVDEHKRLRGAL 76 (221)
Q Consensus 3 ~~~~~~~~yG~v~~~~-~~~~~~v~v~~p~~~~~vl~~~~~~~-~~-~~~~--~~~~~~g-~~~~~~~~g~~~~~~R~~~ 76 (221)
.....+++|||||+.. +|+...|.+.+|++++.+|.+++... .+ .... ..++.++ ..|++..+|++|.+.|..+
T Consensus 78 ~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~~P~Rp~~~~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~l 157 (519)
T KOG0159|consen 78 HIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGKYPFRPLLIEPWVAYRDFRGGVCGLFLLEGPEWQRLRSAL 157 (519)
T ss_pred HHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCCCCCcccccchhhhhHHhhccCCCcccCCCHHHHHHHHHh
Confidence 3567789999999999 66679999999999999999877553 21 1111 1133343 3589999999999999999
Q ss_pred Hh-cCCHHHHHHhHHHHHHHHHHHHhccc----c---CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 77 ES-FFKPEVLKQYVGKMDEDIRKHLNMHW----H---GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 77 ~~-~f~~~~~~~~~~~~~~~~~~~l~~~~----~---~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++ .+.|++++.|.+.+++++++++.. + . ...+.|+.+.+.+++++.||.++||..
T Consensus 158 n~~ll~P~~v~~yl~~l~~V~~DF~~~-l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~r 220 (519)
T KOG0159|consen 158 NPLLLQPQAVRRYLPQLNAVSDDFVER-LRAQRDPERGELVPDFAQELYRWSLESICLVLLGTR 220 (519)
T ss_pred chhhcCHHHHHHHhhHHHHHHHHHHHH-HHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 98 678999999999999999998864 3 1 223568999999999999999999965
No 16
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=4.9e-32 Score=220.32 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=105.1
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh-HHHHHcCC--CcccccChhHHHHHHHHHH-
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS-LIRRIYGE--RSITGLGVDEHKRLRGALE- 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~-~~~~~~g~--~~~~~~~g~~~~~~R~~~~- 77 (221)
.++.+++++||+||++++++.++|+++||+.+++|+.+++..|.++... ....+.|. .+++..+|+.|+++|+++.
T Consensus 54 ~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~ 133 (503)
T PLN02394 54 RNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTV 133 (503)
T ss_pred HHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHhHhccCCCceeecCCCHHHHHHHHHHHH
Confidence 3578999999999999998899999999999999998766666544322 22333332 3467788999999999986
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhccccC-----CCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHWHG-----KQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+.|+++.++.+.+.+++.++++++. |.. ++.+|+.+.+..+++|++++++||.+
T Consensus 134 ~~f~~~~l~~~~~~i~~~v~~lv~~-l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~ 192 (503)
T PLN02394 134 PFFTNKVVQQYRYGWEEEADLVVED-VRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRR 192 (503)
T ss_pred HhcChHHHHHhhHHHHHHHHHHHHH-HHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999888876 532 34589999999999999999999964
No 17
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=6.8e-32 Score=219.85 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=103.8
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh-HHHHHcC--CCcccccChhHHHHHHHH-HH
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS-LIRRIYG--ERSITGLGVDEHKRLRGA-LE 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~-~~~~~~g--~~~~~~~~g~~~~~~R~~-~~ 77 (221)
.++.+++++||++|++++++.++|+++||+++++|+.+++..|..+... ....+.+ ..+++..+|+.|+++|++ +.
T Consensus 59 ~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~ 138 (516)
T PLN02183 59 RGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVM 138 (516)
T ss_pred HHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhccccCCCceEeCCCChHHHHHHHHHHH
Confidence 3578899999999999999999999999999999998776666544321 1122222 245777899999999998 57
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhcccc--CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHWH--GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++|+.+.++.+.+. .+.++.+++. |. .++++|+.+.+..++++++++++||.+
T Consensus 139 ~~f~~~~l~~~~~~-~~~~~~~~~~-l~~~~~~~v~~~~~~~~~~~~vi~~~~fG~~ 193 (516)
T PLN02183 139 KLFSRKRAESWASV-RDEVDSMVRS-VSSNIGKPVNIGELIFTLTRNITYRAAFGSS 193 (516)
T ss_pred HhcCHHHHHHHHHH-HHHHHHHHHH-HHhcCCCcEeHHHHHHHHHHHHHHhHhhcCc
Confidence 89999999888875 4577888887 63 356799999999999999999999964
No 18
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.98 E-value=1.7e-31 Score=217.03 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=104.9
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchh-HHH--HHcCCCcccccChhHHHHHHHHH-H
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPS-LIR--RIYGERSITGLGVDEHKRLRGAL-E 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~-~~~--~~~g~~~~~~~~g~~~~~~R~~~-~ 77 (221)
.++.+++++||++|++++++.++|+++||+++++|+.++...|..+... ... ...+........++.|+++|+.+ .
T Consensus 52 ~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~ 131 (499)
T PLN03234 52 HFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMV 131 (499)
T ss_pred HHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998877677544321 111 11232222445678999999975 6
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhccc----cCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHW----HGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+.|+++++.++.+.+++.++++++. | ..++++|+.+.+..++++++++++||.+
T Consensus 132 ~~f~~~~l~~~~~~i~~~~~~ll~~-l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 189 (499)
T PLN03234 132 NLFSPNRVASFRPVREEECQRMMDK-IYKAADQSGTVDLSELLLSFTNCVVCRQAFGKR 189 (499)
T ss_pred HhcCHHHHHHhHHHHHHHHHHHHHH-HHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999887 6 2466899999999999999999999965
No 19
>PLN02971 tryptophan N-hydroxylase
Probab=99.98 E-value=2.3e-31 Score=217.68 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhhHHhhhcC-CceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCC---cccccChhHHHHHHHHHHh
Q 044998 3 GFKIELKEYG-PISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGER---SITGLGVDEHKRLRGALES 78 (221)
Q Consensus 3 ~~~~~~~~yG-~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~---~~~~~~g~~~~~~R~~~~~ 78 (221)
++.++.++|| +|+++++|+.++|+++||+++++||.+++..|.+++.......+|.+ +++..+|+.|+++|+++.+
T Consensus 83 ~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~ 162 (543)
T PLN02971 83 WLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYAQKILSNGYKTCVITPFGEQFKKMRKVIMT 162 (543)
T ss_pred HHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccchhhccCCCCceEecCCcHHHHHHHHHHHH
Confidence 5788999999 79999999899999999999999999877778765433333445532 3677889999999999975
Q ss_pred -cCCHHHHHHhHHHHHHHHHHHHhccc----cCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 79 -FFKPEVLKQYVGKMDEDIRKHLNMHW----HGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 79 -~f~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
.+++..++.+.+.++++++.+++. + ..++++|+.+.+..++++++++++||.+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~ 220 (543)
T PLN02971 163 EIVCPARHRWLHDNRAEETDHLTAW-LYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTR 220 (543)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCceehHHHHHHHHHHHHHHHHhCCc
Confidence 565656666777777776666543 3 3356799999999999999999999965
No 20
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=3.8e-31 Score=214.65 Aligned_cols=130 Identities=16% Similarity=0.165 Sum_probs=104.9
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhH-H-HHHcC-CCcccccChhHHHHHHHHHHh
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSL-I-RRIYG-ERSITGLGVDEHKRLRGALES 78 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~-~-~~~~g-~~~~~~~~g~~~~~~R~~~~~ 78 (221)
.++.+++++||+||++++++.++|+++||+++++++.++...|..+.... . ....+ ..+++..+|+.|+++|+++.+
T Consensus 54 ~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~ 133 (504)
T PLN00110 54 VALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNL 133 (504)
T ss_pred HHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999987766676543321 1 12233 235677889999999999985
Q ss_pred -cCCHHHHHHhHHHHHHHHHHHHhccc----cCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 79 -FFKPEVLKQYVGKMDEDIRKHLNMHW----HGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 79 -~f~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
.|+++.++.+.+.+.+.+..+++. + ..++++|+.+.+..++++++++++||.+
T Consensus 134 ~~f~~~~l~~~~~~i~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~ 191 (504)
T PLN00110 134 HMLGGKALEDWSQVRTVELGHMLRA-MLELSQRGEPVVVPEMLTFSMANMIGQVILSRR 191 (504)
T ss_pred HhCCHHHHHHhhHHHHHHHHHHHHH-HHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCc
Confidence 899999999998888887776654 3 3466789999999999999999999964
No 21
>PLN02966 cytochrome P450 83A1
Probab=99.97 E-value=2.3e-31 Score=216.22 Aligned_cols=130 Identities=20% Similarity=0.292 Sum_probs=105.4
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHH--cCCCcc-cccChhHHHHHHHH-HH
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRI--YGERSI-TGLGVDEHKRLRGA-LE 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~--~g~~~~-~~~~g~~~~~~R~~-~~ 77 (221)
+++.+++++||++|++++++.++|+++||+++++|+.+++..|.+......... .|...+ +..+|+.|+.+|++ +.
T Consensus 53 ~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~ 132 (502)
T PLN02966 53 RFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMN 132 (502)
T ss_pred HHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999876666654332111111 222222 45679999999998 78
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhcccc----CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHWH----GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++|++.+++.+.+.+.+.+.++++. |. .++++|+.+.+..+++++++.++||.+
T Consensus 133 ~~f~~~~l~~~~~~i~~~~~~l~~~-l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~ 190 (502)
T PLN02966 133 HLFSPTRVATFKHVREEEARRMMDK-INKAADKSEVVDISELMLTFTNSVVCRQAFGKK 190 (502)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCceeHHHHHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999887 63 345799999999999999999999975
No 22
>PLN02936 epsilon-ring hydroxylase
Probab=99.97 E-value=2.1e-30 Score=209.76 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=105.6
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhH-HHHHcCCCcccccChhHHHHHHHHHHhcC
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSL-IRRIYGERSITGLGVDEHKRLRGALESFF 80 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~~~~R~~~~~~f 80 (221)
.++.+++++|||++++++++.++|++++|+++++|+.+.+..|....... ...++| .+++.++|+.|+++|+++.+.|
T Consensus 40 ~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~~~~-~~i~~~~g~~wk~~Rk~l~~~f 118 (489)
T PLN02936 40 LPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEFLFG-SGFAIAEGELWTARRRAVVPSL 118 (489)
T ss_pred HHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHHHhc-CccccCCchHHHHHHHhhcCcc
Confidence 36789999999999999999999999999999999987656665443322 233456 5788899999999999999999
Q ss_pred CHHHHHHhHH-HHHHHHHHHHhccc----cCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 81 KPEVLKQYVG-KMDEDIRKHLNMHW----HGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~l~~~~----~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+...+..+.+ .+.+.++.+++. + ..++++|+.+.+..+++++++.++||.+.
T Consensus 119 ~~~~l~~~~~~~~~~~~~~l~~~-l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~~ 175 (489)
T PLN02936 119 HRRYLSVMVDRVFCKCAERLVEK-LEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYNF 175 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCc
Confidence 9888887654 667777766664 4 23567999999999999999999999763
No 23
>PLN02648 allene oxide synthase
Probab=99.97 E-value=2.6e-31 Score=212.90 Aligned_cols=129 Identities=12% Similarity=0.268 Sum_probs=111.6
Q ss_pred hhhhHHhhhcCC-ceeeccCCcce-------EEEECcccchhcccc----CCCeEeecchhHHHHHcCCC---cccccCh
Q 044998 2 NGFKIELKEYGP-ISKLSLLVTPT-------VYIYGQAANKFVYTC----DDNALANQQPSLIRRIYGER---SITGLGV 66 (221)
Q Consensus 2 ~~~~~~~~~yG~-v~~~~~~~~~~-------v~v~~p~~~~~vl~~----~~~~~~~~~~~~~~~~~g~~---~~~~~~g 66 (221)
+|+.+.++|||+ ||+++++|.|+ |+++||++++.||.+ ++..+...++.... ++|.. +++..+|
T Consensus 45 ~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~-l~G~~~~~s~~~~~g 123 (480)
T PLN02648 45 EFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRDVFTGTYMPSTA-FTGGYRVLSYLDPSE 123 (480)
T ss_pred HHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccccccceeeeccCcc-ccCCceeeeecCCCC
Confidence 689999999999 99999998666 999999999999975 56666666665554 78866 7778899
Q ss_pred hHHHHHHHHHHhcCCHHHHHHhHHHHHHHHHHHHhcccc----CCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 67 DEHKRLRGALESFFKPEVLKQYVGKMDEDIRKHLNMHWH----GKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 67 ~~~~~~R~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
+.|+++|+++.++|+ ..++.+.+.|.+.+.+.++. |. .++++|+.+.++.++++++++++||.+.
T Consensus 124 ~~H~r~Rrll~~~f~-~~~~~~~~~m~~~~~~~~~~-w~~~~~~~~~vdv~~~~~~lt~~vi~~~lfG~~~ 192 (480)
T PLN02648 124 PKHAKLKSFLFELLK-SRHRRFIPEFRAAFAELFDT-WEAELAKKGKAEFNDPLDQMAFNFLCKALTGKDP 192 (480)
T ss_pred chHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHH-HHHHHhhCCCccccchHHHHHHHHHHHHHcCCCc
Confidence 999999999999999 47788999999999999998 93 3457999999999999999999999754
No 24
>PLN00168 Cytochrome P450; Provisional
Probab=99.97 E-value=2.7e-30 Score=210.65 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=105.3
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCC-cccc--cChhHHHHHHH-HHH
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGER-SITG--LGVDEHKRLRG-ALE 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~-~~~~--~~g~~~~~~R~-~~~ 77 (221)
+++.+++++||++|++++++.++|+++||+++++++.+++..|+.+.......++|.. +++. .+|+.|+++|+ ++.
T Consensus 61 ~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~ 140 (519)
T PLN00168 61 PLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVASSRLLGESDNTITRSSYGPVWRLLRRNLVA 140 (519)
T ss_pred HHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccchhhhccCCCceeCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999998877777654332222344432 3433 68999999886 789
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhccccC----CCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHWHG----KQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++|++++++++.+.+.+.++++++. |.. ++.+|+.+.+..++.++++.++||.+
T Consensus 141 ~~fs~~~l~~~~~~~~~~~~~l~~~-l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~ 198 (519)
T PLN00168 141 ETLHPSRVRLFAPARAWVRRVLVDK-LRREAEDAAAPRVVETFQYAMFCLLVLMCFGER 198 (519)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999988886 632 34578999999999999999999975
No 25
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=2.1e-30 Score=208.76 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=98.4
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecch-hHHHHHcCCCc-cccc-ChhHHHHHHHHHH-
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQP-SLIRRIYGERS-ITGL-GVDEHKRLRGALE- 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~-~~~~~~~g~~~-~~~~-~g~~~~~~R~~~~- 77 (221)
.++.+++++||++|++++++.++|+|+||+++++||.++...|..+.. .....+.|..+ +..+ +|+.|+++|+++.
T Consensus 23 ~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~g~~wr~~Rr~~~~ 102 (466)
T PLN02655 23 RTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRDKSMVATSDYGDFHKMVKRYVMN 102 (466)
T ss_pred HHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcCCCceeeCCCcHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999887777765432 23333444333 4444 4899999997655
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhc---ccc--CCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNM---HWH--GKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~---~~~--~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+.|+...++.+.+.+.+.++.+++. .+. .++++|+.+.+..+++++++.++||.+
T Consensus 103 ~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 162 (466)
T PLN02655 103 NLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGED 162 (466)
T ss_pred HhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhccc
Confidence 5677767777776666655554433 022 356799999999999999999999965
No 26
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=7.5e-30 Score=206.83 Aligned_cols=129 Identities=11% Similarity=0.076 Sum_probs=95.7
Q ss_pred hhhHHhhhcCCcee---eccCCcceEEEECcccchhccccCCCeEeecc-hhHHHHHcCCCcccccChhHHHHHHHHHHh
Q 044998 3 GFKIELKEYGPISK---LSLLVTPTVYIYGQAANKFVYTCDDNALANQQ-PSLIRRIYGERSITGLGVDEHKRLRGALES 78 (221)
Q Consensus 3 ~~~~~~~~yG~v~~---~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~ 78 (221)
++.+..++||..++ .++++.++|+++||+++++||.++...|.++. ......++| .|++.++|+.|+.+|+++++
T Consensus 58 ~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~~~~g-~gl~~~~g~~Wr~~Rk~l~p 136 (500)
T PLN02169 58 WTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIFDVLG-EGILTVDFELWEDLRKSNHA 136 (500)
T ss_pred HHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHHHhhc-CcccccCcHHHHHHHHHHHH
Confidence 34444555887655 56788999999999999999987666665443 223345566 68999999999999999999
Q ss_pred cCCHHHHHHh--HHHHHHHHHHHHhc--cc-cCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 79 FFKPEVLKQY--VGKMDEDIRKHLNM--HW-HGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 79 ~f~~~~~~~~--~~~~~~~~~~~l~~--~~-~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
+|+...+... .+.+.+.++.+++. .+ ..++++|+.+.+..+++|++++++||.+
T Consensus 137 ~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 195 (500)
T PLN02169 137 LFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSILMTGYD 195 (500)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhheeCCC
Confidence 9998877642 34454555544443 02 2356799999999999999999999964
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=205.65 Aligned_cols=131 Identities=16% Similarity=0.262 Sum_probs=104.9
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeecchhH--HHHHcCCC-cccccChhHHHHHHHHHH-
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSL--IRRIYGER-SITGLGVDEHKRLRGALE- 77 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~--~~~~~g~~-~~~~~~g~~~~~~R~~~~- 77 (221)
.++.+++++||++|++++++.++|+++||+++++|+.++...|+++.... ....+|.. +++..+|+.|+.+|+++.
T Consensus 55 ~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~ 134 (514)
T PLN03112 55 RDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICME 134 (514)
T ss_pred HHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHH
Confidence 36788999999999999998999999999999999987777776543211 11233422 345678999999999954
Q ss_pred hcCCHHHHHHhHHHHHHHHHHHHhccc---cCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 78 SFFKPEVLKQYVGKMDEDIRKHLNMHW---HGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
++|++++++.+.+.+.+.++.+++..+ ..++++|+.+.+..++++++++++||.+
T Consensus 135 ~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~ 192 (514)
T PLN03112 135 HLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQ 192 (514)
T ss_pred HhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCc
Confidence 689999999999999988888876412 3356799999999999999999999965
No 28
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=4.5e-28 Score=197.46 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=94.5
Q ss_pred hhhHHhhhc-CCceeeccCCcceEEEECcccchhccccCCCeEeecchhHHHHHcCCC--ccccc-ChhHHHHHHHHHHh
Q 044998 3 GFKIELKEY-GPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQPSLIRRIYGER--SITGL-GVDEHKRLRGALES 78 (221)
Q Consensus 3 ~~~~~~~~y-G~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~~~~~~~~g~~--~~~~~-~g~~~~~~R~~~~~ 78 (221)
++.++.++| |+||++++++.++|+++||+.++++|.+++..|+++........++.. +++.+ +|+.|+.+|+++++
T Consensus 66 ~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~ 145 (534)
T PLN03018 66 YFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIMETIGDNYKSMGTSPYGEQFMKMKKVITT 145 (534)
T ss_pred hHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhhhhhccCCCceEecCCCHHHHHHHHHHHH
Confidence 355666666 799999999999999999999999998877777665432222333432 35554 59999999999999
Q ss_pred cCCHHH-HHHhHHHHHHHHHHHHhc---cccCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 79 FFKPEV-LKQYVGKMDEDIRKHLNM---HWHGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 79 ~f~~~~-~~~~~~~~~~~~~~~l~~---~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
.|.... ...+.+.++.++.++++. .+..++++|+.+.+..++++++++++||.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~ 203 (534)
T PLN03018 146 EIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRR 203 (534)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCc
Confidence 765444 333445544455555543 133445799999999999999999999975
No 29
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.95 E-value=8.9e-28 Score=195.91 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=98.2
Q ss_pred hhHHhhhc---CCceeeccCCcceEEEECcccchhccccCCCeEeecch--hHHHHHcCCCcccccChhHHHHHHHHHHh
Q 044998 4 FKIELKEY---GPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQP--SLIRRIYGERSITGLGVDEHKRLRGALES 78 (221)
Q Consensus 4 ~~~~~~~y---G~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~R~~~~~ 78 (221)
+.++.++| |++|++++++.+.|+++||+++++|+.++...+.+... .....++| .+++..+|+.|+++|+++++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~g~~w~~~Rr~l~~ 132 (516)
T PLN03195 54 MHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVLLG-DGIFNVDGELWRKQRKTASF 132 (516)
T ss_pred HHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHHhc-CeeeccCcHHHHHHHHhcch
Confidence 35666777 89999999999999999999999999765444543321 12233456 47888899999999999999
Q ss_pred cCCHHHHHHhHHHH-HHHHHHHHhc---cccCCCeeeeHHHHHHHHHHHHHHHHcCCC
Q 044998 79 FFKPEVLKQYVGKM-DEDIRKHLNM---HWHGKQKVAVMPLMKSLTFNIPSSLIFGIE 132 (221)
Q Consensus 79 ~f~~~~~~~~~~~~-~~~~~~~l~~---~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~ 132 (221)
.|++++++.+.+.+ .+.++.+.+. ....++++|+.+.+..+++++++.++||.+
T Consensus 133 ~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~ 190 (516)
T PLN03195 133 EFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFGVE 190 (516)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999988876 4444444332 123456799999999999999999999964
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.95 E-value=2.1e-27 Score=192.49 Aligned_cols=127 Identities=10% Similarity=0.141 Sum_probs=94.5
Q ss_pred hhhHHhhhcC-CceeeccCCcceEEEECcccchhccccCCCeEeecc-h-hHHHHHcCCCcccccChhHHHHHHHHHHhc
Q 044998 3 GFKIELKEYG-PISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQQ-P-SLIRRIYGERSITGLGVDEHKRLRGALESF 79 (221)
Q Consensus 3 ~~~~~~~~yG-~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~-~-~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~ 79 (221)
++..+.++++ .++++..++. ++++||+++++|+.++...|.++. . ..+..++| .+++.++|+.|+.+|+++++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g-~gi~~~~g~~wk~~Rk~l~~~ 141 (502)
T PLN02426 65 WYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLG-RGIFNVDGDSWRFQRKMASLE 141 (502)
T ss_pred HHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcC-CceeecCcHHHHHHHHHhHhh
Confidence 4445667776 3677765553 899999999999987655665432 2 23345667 588999999999999999999
Q ss_pred CCHHHHHHhH--HHHHHHHHHHHhccc------cCCCeeeeHHHHHHHHHHHHHHHHcCCCC
Q 044998 80 FKPEVLKQYV--GKMDEDIRKHLNMHW------HGKQKVAVMPLMKSLTFNIPSSLIFGIEQ 133 (221)
Q Consensus 80 f~~~~~~~~~--~~~~~~~~~~l~~~~------~~~~~~d~~~~~~~~~~~vi~~~~~g~~~ 133 (221)
|+.++++.+. +.+.+.++++++. + ..+.++|+.+.+..+++|++++++||.+.
T Consensus 142 fs~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~ 202 (502)
T PLN02426 142 LGSVSIRSYAFEIVASEIESRLLPL-LSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDP 202 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998888763 4555555555433 2 12357999999999999999999999763
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.3e-27 Score=180.84 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=98.7
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhccccCCCeEeec--chhHHHHHcCCCcccccChhHHHHHHHHHHhc
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTCDDNALANQ--QPSLIRRIYGERSITGLGVDEHKRLRGALESF 79 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~--~~~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~ 79 (221)
+|+.++++|||+||.+.++|+.+.++.+|+....+++.+...++-. +.....+.+|.+.+...++..+..+.+++...
T Consensus 55 eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg~~v~~d~~~~~~~e~~~~~k~~ 134 (486)
T KOG0684|consen 55 EFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFGKGVVYDVPNHVMMEQKKFFKSA 134 (486)
T ss_pred HHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcCCCccccCCCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998764444322 22344678886455667888899999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcC
Q 044998 80 FKPEVLKQYVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFG 130 (221)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g 130 (221)
+...+++++.+.|.+.+.+.+...|......|....+..+++-..+.+++|
T Consensus 135 L~~~~lk~~~e~m~~el~~~f~~~~~~s~~~d~l~~~~~~ii~tAs~~ll~ 185 (486)
T KOG0684|consen 135 LGGVALKSLVELMLEELHAYFETSLGESGETDGLYTFCRLIIFTASRLLLG 185 (486)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcccccccchhHhhhhhHHHhhhhHHHhhh
Confidence 999999999999999999988754655555555555544444444444444
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=2.3e-26 Score=182.05 Aligned_cols=129 Identities=21% Similarity=0.240 Sum_probs=101.8
Q ss_pred hhHHhhhcCCceeeccCCcc--eEEEECcccchhccccCCCeEeecc----hh-HHHHHcCCCcccccChhHHHHHHHHH
Q 044998 4 FKIELKEYGPISKLSLLVTP--TVYIYGQAANKFVYTCDDNALANQQ----PS-LIRRIYGERSITGLGVDEHKRLRGAL 76 (221)
Q Consensus 4 ~~~~~~~yG~v~~~~~~~~~--~v~v~~p~~~~~vl~~~~~~~~~~~----~~-~~~~~~g~~~~~~~~g~~~~~~R~~~ 76 (221)
...+.+.||.++.+...+.. ++++++++.+++++.++. .+++.. .. .....+|...++.+||+.|+++|+++
T Consensus 28 ~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~Rkl~ 106 (411)
T COG2124 28 LERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLRKLL 106 (411)
T ss_pred HHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHHHHHh
Confidence 34567888888888876654 899999999999998753 222211 11 13466675458899999999999999
Q ss_pred HhcCCHHHHHHhHHHHHHHHHHHHhccccCCCeeeeHHHHHHHHHHHHHHHHcCCCChh
Q 044998 77 ESFFKPEVLKQYVGKMDEDIRKHLNMHWHGKQKVAVMPLMKSLTFNIPSSLIFGIEQGA 135 (221)
Q Consensus 77 ~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~vi~~~~~g~~~~~ 135 (221)
+++|+++.++++.+.|.+.++++++. +..++..++.+.+..+++++|+ .+||.+.++
T Consensus 107 ~~~F~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~v~~~a~~l~~~vi~-~l~Gv~~~~ 163 (411)
T COG2124 107 APAFTPRALRGYRPLIREIADRLLDD-LWQGGADLVLDFAAELTLRVIA-ELLGVPLED 163 (411)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHh-cccCCchhHHHHhhhhhHHHHH-HHhCCCHHH
Confidence 99999999999999999999999998 7333455677778899999999 899977644
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=76.03 E-value=2.4 Score=28.15 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=16.3
Q ss_pred CCcchhHHHHHHHHHHHHhhcc
Q 044998 183 ICPGHEFTRIENLATIHHLVTP 204 (221)
Q Consensus 183 ~C~G~~~A~~e~~~~l~~ll~~ 204 (221)
.|.|+.||..++..+++.|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999864
No 34
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=65.85 E-value=5.2 Score=24.30 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhcccceeeccc
Q 044998 192 IENLATIHHLVTPFSWKSFSS 212 (221)
Q Consensus 192 ~e~~~~l~~ll~~f~~~~~~g 212 (221)
.-|+-++..+|+.|+|.|++=
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 357889999999999999863
No 35
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=48.68 E-value=15 Score=24.35 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.0
Q ss_pred ccCCcchhHHHHHHHHHHHHhhc
Q 044998 181 PWICPGHEFTRIENLATIHHLVT 203 (221)
Q Consensus 181 ~r~C~G~~~A~~e~~~~l~~ll~ 203 (221)
-|.|||.-++......++..|=.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 38999999999999999988744
No 36
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=48.49 E-value=20 Score=19.67 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=15.2
Q ss_pred cCCceeeccCCcceEEEE
Q 044998 11 YGPISKLSLLVTPTVYIY 28 (221)
Q Consensus 11 yG~v~~~~~~~~~~v~v~ 28 (221)
-|++++++.||+.++|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 489999999999888763
No 37
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=39.20 E-value=13 Score=20.33 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=8.5
Q ss_pred eecCCccCCc
Q 044998 176 AFRGGPWICP 185 (221)
Q Consensus 176 ~FG~G~r~C~ 185 (221)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999983
No 38
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=38.84 E-value=45 Score=23.06 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=17.6
Q ss_pred hhhhHHhhhcCCce-eeccCCc----ceEEEEC
Q 044998 2 NGFKIELKEYGPIS-KLSLLVT----PTVYIYG 29 (221)
Q Consensus 2 ~~~~~~~~~yG~v~-~~~~~~~----~~v~v~~ 29 (221)
+.+.++.++||||. .+.-.+. .++||++
T Consensus 99 e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTG 131 (166)
T PF12385_consen 99 EGLANLLREYGPLWVAWEAPGDSWVAHASVITG 131 (166)
T ss_pred HHHHHHHHHcCCeEEEecCCCCcceeeEEEEEe
Confidence 45778899999964 4333443 4556654
No 39
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.28 E-value=24 Score=21.56 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=25.3
Q ss_pred HHhhhcCCceeeccCCcceEEEECcccchhcccc
Q 044998 6 IELKEYGPISKLSLLVTPTVYIYGQAANKFVYTC 39 (221)
Q Consensus 6 ~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~ 39 (221)
+..++||+|....--.+-.++-++.+.+.+++.+
T Consensus 20 RqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 20 RQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred HHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 4568999998876544556667888888888754
No 40
>PRK02302 hypothetical protein; Provisional
Probab=37.60 E-value=27 Score=21.50 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=24.6
Q ss_pred HHhhhcCCceeeccCCcceEEEECcccchhcccc
Q 044998 6 IELKEYGPISKLSLLVTPTVYIYGQAANKFVYTC 39 (221)
Q Consensus 6 ~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~ 39 (221)
+..++||+|..+.=-.+-.++-++.+.+.++..+
T Consensus 21 r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 21 RKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 4468999998876544556666788888887643
No 41
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=34.73 E-value=33 Score=16.43 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=14.4
Q ss_pred cccccceeeecCCccCCc
Q 044998 168 KIHQSSSVAFRGGPWICP 185 (221)
Q Consensus 168 ~~~~~~~~~FG~G~r~C~ 185 (221)
.....+++|+.+..|.|.
T Consensus 14 ~p~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 14 DPRDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCCCcEeCCCCccccCc
Confidence 345678999998899995
No 42
>PRK02886 hypothetical protein; Provisional
Probab=34.31 E-value=33 Score=21.02 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=24.5
Q ss_pred HHhhhcCCceeeccCCcceEEEECcccchhcccc
Q 044998 6 IELKEYGPISKLSLLVTPTVYIYGQAANKFVYTC 39 (221)
Q Consensus 6 ~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~ 39 (221)
+..++||+|..+.=-.+-+|+-++.+.+.++..+
T Consensus 19 r~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 19 KQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred HHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 4468999998876544556666788888887643
No 43
>PHA03162 hypothetical protein; Provisional
Probab=32.37 E-value=40 Score=22.35 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.9
Q ss_pred cCCccCCcchhHHHHHHHHHHHHh
Q 044998 178 RGGPWICPGHEFTRIENLATIHHL 201 (221)
Q Consensus 178 G~G~r~C~G~~~A~~e~~~~l~~l 201 (221)
+.|.+.|||+...+-|+..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 569999999987766666655555
No 44
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=32.11 E-value=29 Score=29.33 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.0
Q ss_pred hhhhHHhhhcCCceeeccCCcc
Q 044998 2 NGFKIELKEYGPISKLSLLVTP 23 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~ 23 (221)
+.|.++.++||+|+-+++.+..
T Consensus 297 kHF~~L~~~YG~v~vvNLl~tK 318 (570)
T COG5329 297 KHFDKLREKYGDVYVVNLLKTK 318 (570)
T ss_pred HHHHHHHHHcCCEEEEEcccCC
Confidence 4688999999999998886643
No 45
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=26.46 E-value=27 Score=19.68 Aligned_cols=8 Identities=13% Similarity=-0.135 Sum_probs=6.3
Q ss_pred CCCccccc
Q 044998 158 CPFTRFNR 165 (221)
Q Consensus 158 f~p~r~~~ 165 (221)
-|||||+.
T Consensus 43 PDPERWLP 50 (59)
T PF08492_consen 43 PDPERWLP 50 (59)
T ss_pred CCccccCc
Confidence 38999983
No 46
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.04 E-value=56 Score=19.20 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHhhhcCCceeeccCCcceEEEECcccchhcccc
Q 044998 6 IELKEYGPISKLSLLVTPTVYIYGQAANKFVYTC 39 (221)
Q Consensus 6 ~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~ 39 (221)
+..++||+|..+.=-.+-.++-.+.+.+.++..+
T Consensus 15 r~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred HhHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 4468999988775433456666788888777643
No 47
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=24.54 E-value=49 Score=21.80 Aligned_cols=36 Identities=6% Similarity=-0.100 Sum_probs=25.1
Q ss_pred hhhhHHhhhcCCceeeccCCcceEEEECcccchhcccc
Q 044998 2 NGFKIELKEYGPISKLSLLVTPTVYIYGQAANKFVYTC 39 (221)
Q Consensus 2 ~~~~~~~~~yG~v~~~~~~~~~~v~v~~p~~~~~vl~~ 39 (221)
.++.+|.++||.+--. .+...+...|++.++++..+
T Consensus 78 ~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 78 QSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 4688999999975431 13445566788888888754
No 48
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=24.47 E-value=43 Score=28.43 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=24.2
Q ss_pred hHHHHHcCCCcccccChhHHHHHHHHHHhcCCHH
Q 044998 50 SLIRRIYGERSITGLGVDEHKRLRGALESFFKPE 83 (221)
Q Consensus 50 ~~~~~~~g~~~~~~~~g~~~~~~R~~~~~~f~~~ 83 (221)
..+..+||..|++..|++ +...|++..|.|...
T Consensus 218 ~l~~~LF~~~GLv~lD~~-~~~lr~l~~p~f~~~ 250 (542)
T PF10079_consen 218 RLMHELFGDYGLVLLDPD-DPELRKLEAPVFKRE 250 (542)
T ss_pred HHHHHHHhhCCeEEECCC-CHHHHHHhHHHHHHH
Confidence 345677888898887655 778888888888643
No 49
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=24.40 E-value=1.6e+02 Score=19.42 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=29.9
Q ss_pred cchhccccCCCeEeecchhHHHHHcCCCcccccChhHHHHH---HHHHHhcCCHHHHHHhHH
Q 044998 32 ANKFVYTCDDNALANQQPSLIRRIYGERSITGLGVDEHKRL---RGALESFFKPEVLKQYVG 90 (221)
Q Consensus 32 ~~~~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~---R~~~~~~f~~~~~~~~~~ 90 (221)
.++..|...+..-..++...++..+. .|++ .|++.|..+ |...+..+..+.......
T Consensus 46 ~lK~~L~~~G~~~~~spr~~~r~A~~-~glI-~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~ 105 (124)
T PF08780_consen 46 TLKDYLEYEGISECNSPRDVFREAFK-AGLI-DDGEIWLDMLEDRNLTSHTYDEETAEEIYE 105 (124)
T ss_dssp HHHHHHHHCTSSCCTSHHHHHHHHHH-TTSS-SHHHHHHHHHHHHHHGGGTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCcccCCHHHHHHHHHH-cCCC-CCHHHHHHHHHHhccccCCCCHHHHHHHHH
Confidence 34445544343211122223343333 4666 788999765 566777777665555433
No 50
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=24.32 E-value=32 Score=23.42 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=8.3
Q ss_pred CccCCcchhH
Q 044998 180 GPWICPGHEF 189 (221)
Q Consensus 180 G~r~C~G~~~ 189 (221)
-||.|+|+++
T Consensus 127 kPRs~LgMHM 136 (150)
T PF15442_consen 127 KPRSCLGMHM 136 (150)
T ss_pred CcccccchHH
Confidence 4899999984
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=24.25 E-value=56 Score=17.47 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=19.1
Q ss_pred hhHHhhhcCCceeeccCCcc----eEEEECcccchhcc
Q 044998 4 FKIELKEYGPISKLSLLVTP----TVYIYGQAANKFVY 37 (221)
Q Consensus 4 ~~~~~~~yG~v~~~~~~~~~----~v~v~~p~~~~~vl 37 (221)
+.+..++||+|-.+.+.... .|-..+++.++...
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~ 38 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAI 38 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHH
Confidence 35678899999887764422 23333555554444
No 52
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.74 E-value=39 Score=28.69 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=8.2
Q ss_pred ecCCccCCcc
Q 044998 177 FRGGPWICPG 186 (221)
Q Consensus 177 FG~G~r~C~G 186 (221)
=|.|||.||-
T Consensus 267 eg~GPRYCPS 276 (621)
T COG0445 267 EGVGPRYCPS 276 (621)
T ss_pred cccCCCCCCC
Confidence 4569999996
No 53
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=21.76 E-value=97 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCccCCcchhHHHHHHHHHHHHhh
Q 044998 179 GGPWICPGHEFTRIENLATIHHLV 202 (221)
Q Consensus 179 ~G~r~C~G~~~A~~e~~~~l~~ll 202 (221)
.=.|.|||.-+......++.-.|=
T Consensus 21 FHGH~cPg~~lG~r~~~iA~e~Lg 44 (206)
T COG2191 21 FHGHLCPGLALGYRMALIAMEELG 44 (206)
T ss_pred ccCcCCCchHHHHHHHHHHHHHcC
Confidence 345999999998888877776664
No 54
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=20.54 E-value=43 Score=18.42 Aligned_cols=10 Identities=20% Similarity=0.591 Sum_probs=8.1
Q ss_pred eecCCccCCc
Q 044998 176 AFRGGPWICP 185 (221)
Q Consensus 176 ~FG~G~r~C~ 185 (221)
-||-|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 3899999983
Done!