Query 044999
Match_columns 461
No_of_seqs 297 out of 2182
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4224 Armadillo repeat prote 100.0 2.1E-42 4.5E-47 296.2 24.1 425 26-460 63-496 (550)
2 PLN03200 cellulose synthase-in 100.0 2E-38 4.4E-43 332.0 49.0 435 10-457 189-764 (2102)
3 PLN03200 cellulose synthase-in 100.0 5.4E-38 1.2E-42 328.8 46.8 438 9-460 143-726 (2102)
4 KOG4224 Armadillo repeat prote 100.0 5.2E-37 1.1E-41 263.2 28.2 411 10-431 85-514 (550)
5 KOG0166 Karyopherin (importin) 100.0 3.7E-34 8.1E-39 262.7 34.4 377 49-431 67-467 (514)
6 KOG0166 Karyopherin (importin) 100.0 1.1E-31 2.4E-36 246.6 34.2 394 12-411 68-488 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 2.8E-31 6E-36 226.2 23.8 375 49-431 72-477 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 2.8E-30 6.1E-35 220.0 26.9 403 8-417 69-504 (526)
9 PF05804 KAP: Kinesin-associat 100.0 1.6E-26 3.4E-31 224.8 38.7 388 8-412 248-652 (708)
10 PF05804 KAP: Kinesin-associat 100.0 6.8E-26 1.5E-30 220.4 39.9 372 70-456 265-648 (708)
11 KOG1048 Neural adherens juncti 99.9 1.2E-20 2.6E-25 179.5 26.7 357 49-414 234-689 (717)
12 KOG1048 Neural adherens juncti 99.9 1.9E-20 4.2E-25 178.2 22.2 349 98-454 234-681 (717)
13 KOG2122 Beta-catenin-binding p 99.9 5E-20 1.1E-24 182.9 22.9 339 71-411 211-603 (2195)
14 KOG4500 Rho/Rac GTPase guanine 99.8 1.4E-17 3E-22 147.3 30.7 422 10-434 42-500 (604)
15 PF10508 Proteasom_PSMB: Prote 99.8 1.2E-16 2.7E-21 154.6 39.7 389 52-456 42-461 (503)
16 KOG4199 Uncharacterized conser 99.8 5.8E-17 1.3E-21 139.0 29.1 338 74-416 79-451 (461)
17 PF10508 Proteasom_PSMB: Prote 99.8 6.7E-16 1.5E-20 149.5 39.9 389 15-411 43-464 (503)
18 KOG4500 Rho/Rac GTPase guanine 99.8 1.6E-17 3.5E-22 146.8 24.8 367 70-443 58-460 (604)
19 KOG2122 Beta-catenin-binding p 99.8 6.2E-18 1.3E-22 168.3 24.5 338 29-370 213-603 (2195)
20 KOG4199 Uncharacterized conser 99.8 3.4E-16 7.3E-21 134.3 29.0 313 18-335 115-452 (461)
21 KOG1222 Kinesin associated pro 99.8 3.8E-15 8.3E-20 133.8 29.3 347 70-425 279-637 (791)
22 KOG1222 Kinesin associated pro 99.7 4.1E-15 8.8E-20 133.6 28.8 373 23-412 276-666 (791)
23 PF04826 Arm_2: Armadillo-like 99.7 9.8E-15 2.1E-19 126.7 20.1 192 217-410 8-206 (254)
24 PRK09687 putative lyase; Provi 99.7 2.7E-14 5.8E-19 127.0 22.4 254 98-406 24-279 (280)
25 PF04826 Arm_2: Armadillo-like 99.6 7.8E-14 1.7E-18 121.1 22.8 191 49-251 13-206 (254)
26 PRK13800 putative oxidoreducta 99.6 4.3E-13 9.3E-18 139.4 30.2 274 49-405 622-895 (897)
27 PF01602 Adaptin_N: Adaptin N 99.6 1.7E-12 3.6E-17 129.1 32.2 359 11-410 80-445 (526)
28 KOG2171 Karyopherin (importin) 99.6 1.1E-11 2.4E-16 123.5 36.7 389 7-408 115-548 (1075)
29 PRK13800 putative oxidoreducta 99.6 8.4E-13 1.8E-17 137.2 29.8 276 10-365 621-896 (897)
30 KOG1293 Proteins containing ar 99.6 4.1E-12 8.8E-17 119.0 29.6 394 19-417 18-498 (678)
31 cd00256 VATPase_H VATPase_H, r 99.6 4.5E-12 9.8E-17 117.2 27.9 312 49-367 54-424 (429)
32 KOG2171 Karyopherin (importin) 99.6 2.4E-11 5.2E-16 121.1 33.9 384 14-412 83-507 (1075)
33 PRK09687 putative lyase; Provi 99.6 2.6E-12 5.7E-17 114.3 24.6 255 140-454 24-279 (280)
34 PF01602 Adaptin_N: Adaptin N 99.5 1.9E-12 4E-17 128.8 24.7 362 7-408 39-405 (526)
35 KOG2023 Nuclear transport rece 99.5 5.2E-13 1.1E-17 124.6 17.5 312 97-412 128-508 (885)
36 PTZ00429 beta-adaptin; Provisi 99.5 5.7E-10 1.2E-14 111.4 35.9 328 7-368 65-397 (746)
37 KOG1293 Proteins containing ar 99.5 7.7E-11 1.7E-15 110.6 27.0 396 9-412 50-536 (678)
38 cd00256 VATPase_H VATPase_H, r 99.4 1.3E-10 2.9E-15 107.6 26.2 311 98-408 54-424 (429)
39 PTZ00429 beta-adaptin; Provisi 99.4 1E-08 2.2E-13 102.6 40.1 287 11-326 106-396 (746)
40 cd00020 ARM Armadillo/beta-cat 99.4 2.1E-11 4.5E-16 95.3 14.9 117 134-250 2-120 (120)
41 KOG0168 Putative ubiquitin fus 99.4 1.1E-10 2.4E-15 112.3 22.0 214 49-271 168-389 (1051)
42 cd00020 ARM Armadillo/beta-cat 99.4 3.3E-11 7.2E-16 94.1 14.6 117 92-208 2-119 (120)
43 KOG2023 Nuclear transport rece 99.3 4.3E-10 9.2E-15 105.6 21.8 384 14-416 94-556 (885)
44 KOG0946 ER-Golgi vesicle-tethe 99.3 1.4E-08 3.1E-13 97.4 29.8 329 46-410 20-400 (970)
45 KOG2759 Vacuolar H+-ATPase V1 99.3 7.1E-09 1.5E-13 92.9 25.2 312 49-368 66-438 (442)
46 KOG1241 Karyopherin (importin) 99.2 3.8E-08 8.1E-13 94.3 30.6 376 23-410 50-478 (859)
47 KOG0212 Uncharacterized conser 99.2 5.6E-09 1.2E-13 96.5 24.0 389 15-414 5-411 (675)
48 KOG1241 Karyopherin (importin) 99.2 1.4E-08 3.1E-13 97.1 26.5 399 4-410 123-627 (859)
49 KOG4413 26S proteasome regulat 99.2 7.3E-08 1.6E-12 83.5 26.3 384 49-447 83-515 (524)
50 PF03224 V-ATPase_H_N: V-ATPas 99.2 2.4E-09 5.1E-14 98.1 18.2 226 49-280 56-303 (312)
51 PF03224 V-ATPase_H_N: V-ATPas 99.2 1.2E-09 2.6E-14 100.0 16.0 228 141-402 57-307 (312)
52 KOG2160 Armadillo/beta-catenin 99.2 1E-08 2.2E-13 90.7 20.6 186 64-251 93-283 (342)
53 KOG0212 Uncharacterized conser 99.2 5E-08 1.1E-12 90.4 25.8 353 8-372 82-450 (675)
54 KOG1062 Vesicle coat complex A 99.1 1.5E-07 3.3E-12 90.8 29.5 272 69-368 122-414 (866)
55 KOG2160 Armadillo/beta-catenin 99.1 1.3E-08 2.9E-13 89.9 20.5 182 108-290 94-281 (342)
56 KOG0946 ER-Golgi vesicle-tethe 99.1 2.6E-07 5.6E-12 89.0 28.3 323 8-335 20-408 (970)
57 PF05536 Neurochondrin: Neuroc 99.1 3.7E-07 8.1E-12 89.1 30.3 421 8-439 3-519 (543)
58 KOG2973 Uncharacterized conser 99.1 7.9E-08 1.7E-12 82.7 22.0 268 142-414 6-320 (353)
59 KOG0168 Putative ubiquitin fus 99.1 1.4E-08 3.1E-13 98.1 19.1 248 141-390 169-436 (1051)
60 KOG4413 26S proteasome regulat 99.1 5.7E-07 1.2E-11 78.1 26.9 339 74-416 63-446 (524)
61 KOG3678 SARM protein (with ste 99.1 2.6E-08 5.6E-13 90.2 19.1 273 88-368 171-452 (832)
62 KOG2759 Vacuolar H+-ATPase V1 99.0 1.2E-07 2.5E-12 85.2 22.2 310 99-408 67-437 (442)
63 KOG1242 Protein containing ada 99.0 2.9E-07 6.2E-12 87.0 25.6 381 8-410 53-445 (569)
64 COG5215 KAP95 Karyopherin (imp 99.0 7.5E-07 1.6E-11 82.9 26.3 394 3-410 126-669 (858)
65 KOG2973 Uncharacterized conser 99.0 1.5E-07 3.4E-12 80.9 18.8 265 182-457 5-315 (353)
66 KOG0213 Splicing factor 3b, su 98.9 2E-06 4.4E-11 82.5 27.7 372 21-412 487-915 (1172)
67 COG5215 KAP95 Karyopherin (imp 98.9 7.6E-06 1.6E-10 76.5 30.2 392 7-411 36-481 (858)
68 KOG3678 SARM protein (with ste 98.9 1.4E-07 3.1E-12 85.6 18.6 266 8-289 178-450 (832)
69 KOG1062 Vesicle coat complex A 98.9 5.3E-06 1.2E-10 80.5 29.9 374 13-417 110-589 (866)
70 KOG1242 Protein containing ada 98.9 2.2E-06 4.7E-11 81.2 26.2 359 7-391 93-464 (569)
71 KOG0213 Splicing factor 3b, su 98.9 1.4E-06 3E-11 83.6 23.9 384 8-414 551-959 (1172)
72 KOG1059 Vesicle coat complex A 98.8 9.8E-06 2.1E-10 77.8 28.3 406 2-453 137-573 (877)
73 KOG1061 Vesicle coat complex A 98.8 7.5E-07 1.6E-11 86.2 21.2 370 2-410 79-454 (734)
74 PF05536 Neurochondrin: Neuroc 98.8 1.7E-05 3.6E-10 77.7 29.5 401 49-460 6-497 (543)
75 PF14664 RICTOR_N: Rapamycin-i 98.8 9.9E-06 2.2E-10 75.1 26.0 245 121-368 7-269 (371)
76 TIGR02270 conserved hypothetic 98.8 7.4E-06 1.6E-10 76.9 25.4 242 49-368 55-296 (410)
77 KOG1824 TATA-binding protein-i 98.8 4.9E-06 1.1E-10 82.1 24.6 380 8-412 566-1039(1233)
78 KOG1077 Vesicle coat complex A 98.8 2.6E-05 5.7E-10 74.7 28.1 375 17-422 81-501 (938)
79 KOG1059 Vesicle coat complex A 98.8 6.9E-05 1.5E-09 72.2 30.9 366 20-420 119-501 (877)
80 KOG0211 Protein phosphatase 2A 98.7 5.5E-06 1.2E-10 82.6 23.8 421 8-455 235-662 (759)
81 KOG1789 Endocytosis protein RM 98.7 0.00012 2.5E-09 73.5 31.9 317 94-411 1372-1885(2235)
82 KOG1060 Vesicle coat complex A 98.7 4.8E-05 1E-09 73.9 28.7 284 99-412 145-461 (968)
83 COG5181 HSH155 U2 snRNP splice 98.7 5.4E-06 1.2E-10 78.1 20.9 260 140-411 605-872 (975)
84 KOG1061 Vesicle coat complex A 98.6 2.9E-06 6.4E-11 82.2 18.7 366 7-410 46-416 (734)
85 TIGR02270 conserved hypothetic 98.6 2.3E-05 4.9E-10 73.7 23.6 250 97-417 54-304 (410)
86 KOG1824 TATA-binding protein-i 98.6 6.2E-05 1.3E-09 74.6 26.8 435 8-456 45-598 (1233)
87 COG5369 Uncharacterized conser 98.6 5.5E-07 1.2E-11 83.2 10.8 291 157-456 407-740 (743)
88 COG5369 Uncharacterized conser 98.6 3.2E-06 6.9E-11 78.3 15.6 284 116-408 408-740 (743)
89 KOG4646 Uncharacterized conser 98.6 2.6E-06 5.7E-11 64.1 12.3 149 301-455 19-168 (173)
90 KOG1077 Vesicle coat complex A 98.5 0.00018 4E-09 69.2 26.6 228 10-249 187-432 (938)
91 KOG4646 Uncharacterized conser 98.5 3.2E-06 6.9E-11 63.7 10.7 132 140-271 17-150 (173)
92 KOG1789 Endocytosis protein RM 98.5 0.00061 1.3E-08 68.7 29.2 314 26-350 1741-2141(2235)
93 COG5181 HSH155 U2 snRNP splice 98.4 5.1E-06 1.1E-10 78.3 13.8 258 98-369 605-871 (975)
94 KOG0211 Protein phosphatase 2A 98.4 8.8E-05 1.9E-09 74.3 21.8 380 8-408 274-663 (759)
95 KOG0915 Uncharacterized conser 98.4 5.4E-05 1.2E-09 78.7 20.5 335 12-376 958-1316(1702)
96 KOG2259 Uncharacterized conser 98.3 2.5E-05 5.4E-10 74.3 15.9 253 49-324 199-472 (823)
97 KOG1517 Guanine nucleotide bin 98.3 3E-05 6.6E-10 77.5 16.9 233 116-368 489-732 (1387)
98 KOG1517 Guanine nucleotide bin 98.3 4E-05 8.7E-10 76.7 16.9 219 74-293 490-734 (1387)
99 COG5240 SEC21 Vesicle coat com 98.3 0.00034 7.4E-09 65.9 21.9 339 66-431 202-576 (898)
100 KOG2259 Uncharacterized conser 98.3 2.4E-05 5.3E-10 74.4 14.7 296 7-328 195-512 (823)
101 COG1413 FOG: HEAT repeat [Ener 98.3 0.0011 2.4E-08 61.8 26.2 248 49-368 44-304 (335)
102 COG1413 FOG: HEAT repeat [Ener 98.3 0.0006 1.3E-08 63.6 23.9 252 97-412 43-307 (335)
103 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00023 5E-09 66.2 20.6 243 168-411 13-271 (371)
104 PF12348 CLASP_N: CLASP N term 98.2 1.2E-05 2.7E-10 70.4 11.1 179 190-368 17-206 (228)
105 PF00514 Arm: Armadillo/beta-c 98.2 2.4E-06 5.1E-11 51.8 4.6 41 369-409 1-41 (41)
106 KOG1240 Protein kinase contain 98.2 0.00024 5.3E-09 72.4 20.1 284 22-328 435-726 (1431)
107 COG5096 Vesicle coat complex, 98.2 0.011 2.4E-07 59.2 30.4 240 8-274 53-296 (757)
108 PRK14707 hypothetical protein; 98.1 0.0084 1.8E-07 65.2 30.2 424 23-461 178-618 (2710)
109 PRK14707 hypothetical protein; 98.1 0.018 4E-07 62.7 32.4 349 102-459 295-658 (2710)
110 PF10165 Ric8: Guanine nucleot 98.1 0.00076 1.7E-08 64.8 21.0 252 75-328 2-338 (446)
111 KOG2734 Uncharacterized conser 98.1 0.0027 5.8E-08 58.2 22.7 242 127-368 113-400 (536)
112 KOG1943 Beta-tubulin folding c 98.1 0.016 3.6E-07 59.1 30.3 333 8-368 339-705 (1133)
113 KOG1060 Vesicle coat complex A 98.1 0.0057 1.2E-07 60.2 26.2 279 51-368 38-350 (968)
114 PF10165 Ric8: Guanine nucleot 98.0 0.0021 4.5E-08 61.9 22.7 125 127-251 10-169 (446)
115 PF08569 Mo25: Mo25-like; Int 98.0 0.0017 3.8E-08 59.3 20.5 266 25-308 14-307 (335)
116 PF00514 Arm: Armadillo/beta-c 98.0 1.8E-05 3.8E-10 47.9 5.2 41 169-209 1-41 (41)
117 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00048 1E-08 60.2 15.5 222 146-367 156-427 (432)
118 KOG2734 Uncharacterized conser 98.0 0.007 1.5E-07 55.6 22.8 252 74-328 104-401 (536)
119 PF12460 MMS19_C: RNAPII trans 97.9 0.021 4.6E-07 54.8 26.9 339 12-368 1-394 (415)
120 KOG0915 Uncharacterized conser 97.9 0.0024 5.3E-08 67.0 21.0 298 99-397 820-1189(1702)
121 KOG1058 Vesicle coat complex C 97.9 0.0055 1.2E-07 59.9 21.8 320 7-368 131-463 (948)
122 PF12348 CLASP_N: CLASP N term 97.8 0.00028 6.1E-09 61.8 12.1 180 107-291 17-206 (228)
123 PF13646 HEAT_2: HEAT repeats; 97.8 8.7E-05 1.9E-09 53.9 7.0 86 182-287 1-88 (88)
124 KOG1058 Vesicle coat complex C 97.8 0.045 9.7E-07 53.9 26.4 278 98-407 135-423 (948)
125 PF13646 HEAT_2: HEAT repeats; 97.8 8.9E-05 1.9E-09 53.8 6.8 86 141-246 1-88 (88)
126 COG5240 SEC21 Vesicle coat com 97.8 0.016 3.4E-07 55.2 22.1 286 49-369 265-556 (898)
127 KOG3036 Protein involved in ce 97.6 0.0057 1.2E-07 51.6 15.7 143 195-337 94-257 (293)
128 KOG1240 Protein kinase contain 97.6 0.01 2.2E-07 61.2 20.2 278 70-368 439-725 (1431)
129 COG5096 Vesicle coat complex, 97.6 0.0044 9.6E-08 61.9 17.2 166 230-410 28-196 (757)
130 KOG3036 Protein involved in ce 97.6 0.011 2.3E-07 50.1 16.6 147 154-300 94-256 (293)
131 KOG1248 Uncharacterized conser 97.6 0.089 1.9E-06 54.7 26.3 218 148-368 663-898 (1176)
132 smart00185 ARM Armadillo/beta- 97.6 0.00022 4.7E-09 43.1 5.1 40 370-409 2-41 (41)
133 PF09759 Atx10homo_assoc: Spin 97.6 0.00038 8.3E-09 50.8 6.9 69 355-423 2-74 (102)
134 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00013 2.8E-09 47.5 3.7 55 312-366 1-55 (55)
135 PF04078 Rcd1: Cell differenti 97.4 0.011 2.3E-07 51.1 15.2 211 151-366 7-260 (262)
136 KOG1078 Vesicle coat complex C 97.4 0.16 3.5E-06 50.4 26.0 254 141-408 247-531 (865)
137 PF11841 DUF3361: Domain of un 97.4 0.0037 8.1E-08 49.7 11.2 119 133-251 5-132 (160)
138 smart00185 ARM Armadillo/beta- 97.4 0.0004 8.7E-09 41.8 4.7 39 330-368 3-41 (41)
139 KOG0567 HEAT repeat-containing 97.4 0.06 1.3E-06 46.3 18.9 203 182-425 38-264 (289)
140 PF09759 Atx10homo_assoc: Spin 97.4 0.0015 3.3E-08 47.8 8.1 66 72-138 4-71 (102)
141 PF08569 Mo25: Mo25-like; Int 97.4 0.019 4.2E-07 52.6 17.1 202 133-336 70-292 (335)
142 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00042 9.1E-09 45.0 4.5 55 194-248 1-55 (55)
143 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.044 9.5E-07 48.4 17.7 213 74-289 169-426 (432)
144 PF11841 DUF3361: Domain of un 97.3 0.0096 2.1E-07 47.4 12.3 118 172-289 3-129 (160)
145 PF12717 Cnd1: non-SMC mitotic 97.2 0.04 8.7E-07 45.9 16.1 161 152-323 1-175 (178)
146 KOG2032 Uncharacterized conser 97.1 0.067 1.4E-06 50.2 17.8 259 100-368 261-531 (533)
147 KOG1832 HIV-1 Vpr-binding prot 97.1 0.019 4.1E-07 57.4 15.1 155 216-379 596-784 (1516)
148 KOG2062 26S proteasome regulat 97.1 0.098 2.1E-06 51.6 19.4 158 97-279 519-682 (929)
149 KOG4151 Myosin assembly protei 97.1 0.0082 1.8E-07 59.3 12.5 216 168-388 492-720 (748)
150 KOG2032 Uncharacterized conser 97.1 0.29 6.3E-06 46.1 24.3 263 137-408 252-530 (533)
151 PF12717 Cnd1: non-SMC mitotic 97.0 0.083 1.8E-06 44.0 16.5 92 193-292 1-93 (178)
152 PF04078 Rcd1: Cell differenti 97.0 0.021 4.6E-07 49.3 12.7 161 123-289 76-260 (262)
153 PF12460 MMS19_C: RNAPII trans 97.0 0.39 8.4E-06 46.2 31.2 342 50-411 1-396 (415)
154 PF12755 Vac14_Fab1_bd: Vacuol 96.9 0.0065 1.4E-07 44.5 7.7 91 156-248 3-94 (97)
155 PF05918 API5: Apoptosis inhib 96.9 0.49 1.1E-05 46.3 22.3 289 7-328 20-346 (556)
156 PF05004 IFRD: Interferon-rela 96.8 0.13 2.7E-06 47.0 17.0 185 223-408 45-256 (309)
157 PF07814 WAPL: Wings apart-lik 96.8 0.15 3.2E-06 47.8 17.6 231 141-371 23-359 (361)
158 PF05004 IFRD: Interferon-rela 96.7 0.15 3.1E-06 46.6 16.6 185 182-368 45-257 (309)
159 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.38 8.3E-06 49.4 20.9 240 176-417 113-414 (802)
160 PF05918 API5: Apoptosis inhib 96.7 0.25 5.3E-06 48.3 18.7 258 7-294 56-348 (556)
161 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0096 2.1E-07 43.6 7.2 82 197-282 3-88 (97)
162 PF11701 UNC45-central: Myosin 96.7 0.0092 2E-07 48.4 7.9 144 141-288 5-156 (157)
163 KOG4151 Myosin assembly protei 96.7 0.052 1.1E-06 54.0 14.0 209 10-227 504-718 (748)
164 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.6 1.3E-05 48.0 21.8 182 92-277 112-334 (802)
165 KOG1248 Uncharacterized conser 96.6 1.1 2.5E-05 47.0 27.2 228 184-412 657-901 (1176)
166 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0053 1.1E-07 46.2 5.6 70 98-167 44-114 (119)
167 KOG1832 HIV-1 Vpr-binding prot 96.6 0.19 4.1E-06 50.7 17.2 345 71-420 326-784 (1516)
168 KOG0567 HEAT repeat-containing 96.6 0.41 9E-06 41.4 20.3 196 178-408 65-279 (289)
169 KOG4535 HEAT and armadillo rep 96.6 0.12 2.6E-06 48.4 14.6 185 114-299 408-611 (728)
170 PF12719 Cnd3: Nuclear condens 96.5 0.15 3.2E-06 46.6 15.0 173 6-192 22-209 (298)
171 PF04063 DUF383: Domain of unk 96.5 0.024 5.2E-07 47.4 8.9 117 273-389 6-156 (192)
172 PF11701 UNC45-central: Myosin 96.4 0.013 2.8E-07 47.6 7.2 139 265-406 6-156 (157)
173 PF04063 DUF383: Domain of unk 96.4 0.027 6E-07 47.0 9.0 118 232-349 6-157 (192)
174 PF08045 CDC14: Cell division 96.4 0.076 1.7E-06 46.3 11.7 95 114-208 108-206 (257)
175 KOG1078 Vesicle coat complex C 96.3 1.3 2.9E-05 44.3 29.5 66 222-291 246-311 (865)
176 PF07814 WAPL: Wings apart-lik 96.3 0.23 4.9E-06 46.6 15.7 237 8-262 19-312 (361)
177 KOG1566 Conserved protein Mo25 96.3 0.72 1.6E-05 41.0 17.9 203 92-294 74-289 (342)
178 KOG1967 DNA repair/transcripti 96.3 0.047 1E-06 55.0 11.2 142 262-403 867-1018(1030)
179 KOG2274 Predicted importin 9 [ 96.3 0.75 1.6E-05 46.8 19.2 240 193-439 463-719 (1005)
180 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.012 2.7E-07 44.3 5.5 69 340-408 44-114 (119)
181 KOG2999 Regulator of Rac1, req 96.2 0.33 7.3E-06 46.3 15.8 150 140-289 84-240 (713)
182 KOG4535 HEAT and armadillo rep 96.2 0.031 6.8E-07 52.1 8.7 289 70-368 271-603 (728)
183 PF08045 CDC14: Cell division 96.1 0.073 1.6E-06 46.4 10.3 97 314-410 107-208 (257)
184 PF14668 RICTOR_V: Rapamycin-i 96.1 0.023 4.9E-07 38.9 5.7 66 356-421 4-70 (73)
185 PF12719 Cnd3: Nuclear condens 96.0 0.24 5.1E-06 45.3 14.0 168 99-274 28-209 (298)
186 KOG2062 26S proteasome regulat 96.0 0.51 1.1E-05 46.8 16.3 102 301-417 522-626 (929)
187 KOG2025 Chromosome condensatio 95.9 1.6 3.4E-05 43.4 19.1 136 113-258 62-198 (892)
188 KOG2274 Predicted importin 9 [ 95.9 2.4 5.1E-05 43.4 23.4 217 107-328 460-690 (1005)
189 KOG2611 Neurochondrin/leucine- 95.9 1.2 2.7E-05 42.0 17.5 221 102-326 16-273 (698)
190 KOG4653 Uncharacterized conser 95.9 0.91 2E-05 46.0 17.7 223 8-248 725-962 (982)
191 KOG4653 Uncharacterized conser 95.8 0.35 7.6E-06 48.7 14.5 217 182-407 729-962 (982)
192 KOG1967 DNA repair/transcripti 95.8 0.19 4.1E-06 50.9 12.8 143 220-363 866-1019(1030)
193 KOG1943 Beta-tubulin folding c 95.7 3.3 7.2E-05 43.3 34.6 217 139-364 341-607 (1133)
194 KOG0414 Chromosome condensatio 95.7 0.1 2.3E-06 54.1 10.7 140 263-411 920-1066(1251)
195 KOG2956 CLIP-associating prote 95.6 0.87 1.9E-05 42.8 15.4 172 111-289 301-475 (516)
196 PF02985 HEAT: HEAT repeat; I 95.6 0.026 5.6E-07 31.4 3.6 29 182-210 2-30 (31)
197 PF06025 DUF913: Domain of Unk 95.5 1.5 3.2E-05 41.3 17.1 96 97-192 106-208 (379)
198 PF02985 HEAT: HEAT repeat; I 95.4 0.033 7.2E-07 30.9 3.6 27 12-38 2-28 (31)
199 KOG1566 Conserved protein Mo25 95.3 2 4.3E-05 38.4 16.4 213 174-389 73-309 (342)
200 KOG2956 CLIP-associating prote 95.3 1.5 3.2E-05 41.4 15.7 166 154-326 302-476 (516)
201 COG5209 RCD1 Uncharacterized p 95.1 0.12 2.7E-06 43.2 7.7 141 196-336 116-277 (315)
202 PF14668 RICTOR_V: Rapamycin-i 94.8 0.15 3.3E-06 34.8 6.3 66 315-380 4-70 (73)
203 KOG2611 Neurochondrin/leucine- 94.7 3.6 7.8E-05 39.0 16.6 144 4-152 5-165 (698)
204 KOG1020 Sister chromatid cohes 94.6 8.5 0.00018 42.1 24.8 144 98-251 817-961 (1692)
205 KOG1243 Protein kinase [Genera 94.6 0.69 1.5E-05 45.7 12.4 187 94-289 327-513 (690)
206 COG5209 RCD1 Uncharacterized p 94.5 0.59 1.3E-05 39.3 10.1 146 114-259 116-277 (315)
207 KOG2999 Regulator of Rac1, req 94.5 1.2 2.7E-05 42.7 13.3 152 99-251 85-243 (713)
208 KOG2137 Protein kinase [Signal 94.4 2.2 4.7E-05 42.6 15.4 137 134-275 384-521 (700)
209 KOG0414 Chromosome condensatio 94.4 0.3 6.4E-06 51.0 9.9 138 222-368 920-1064(1251)
210 KOG1991 Nuclear transport rece 94.4 7.4 0.00016 40.5 28.9 365 14-390 466-872 (1010)
211 COG5116 RPN2 26S proteasome re 94.3 4.3 9.2E-05 39.4 16.4 151 102-276 521-676 (926)
212 KOG3665 ZYG-1-like serine/thre 94.3 7.3 0.00016 40.1 20.0 187 162-361 494-690 (699)
213 PF06025 DUF913: Domain of Unk 94.2 5.2 0.00011 37.8 19.5 158 117-274 4-208 (379)
214 KOG3665 ZYG-1-like serine/thre 94.1 8.1 0.00017 39.8 24.1 190 203-404 494-692 (699)
215 KOG1243 Protein kinase [Genera 94.1 1.5 3.3E-05 43.5 13.5 182 218-407 327-513 (690)
216 KOG1991 Nuclear transport rece 94.0 9.1 0.0002 39.8 34.5 357 8-381 408-815 (1010)
217 KOG2025 Chromosome condensatio 93.9 2.8 6.2E-05 41.7 14.8 102 221-322 85-188 (892)
218 COG5098 Chromosome condensatio 93.8 3.9 8.5E-05 40.7 15.5 222 98-337 893-1123(1128)
219 KOG4464 Signaling protein RIC- 93.7 5.8 0.00013 36.9 20.4 302 7-328 42-403 (532)
220 PF11707 Npa1: Ribosome 60S bi 93.7 5.9 0.00013 36.7 17.0 164 9-172 55-241 (330)
221 PF06371 Drf_GBD: Diaphanous G 93.6 1.3 2.7E-05 37.2 11.1 108 99-208 68-186 (187)
222 KOG4464 Signaling protein RIC- 93.6 6.2 0.00013 36.7 16.5 270 143-412 49-405 (532)
223 PF06371 Drf_GBD: Diaphanous G 93.4 1.4 2.9E-05 37.0 10.9 80 170-249 97-186 (187)
224 KOG1820 Microtubule-associated 93.1 4 8.7E-05 42.3 15.2 183 222-410 254-444 (815)
225 KOG1820 Microtubule-associated 93.0 6.6 0.00014 40.8 16.6 180 185-368 258-443 (815)
226 KOG1525 Sister chromatid cohes 92.8 18 0.00038 39.7 20.8 147 220-368 258-405 (1266)
227 COG5098 Chromosome condensatio 92.3 5.1 0.00011 40.0 13.8 218 182-419 894-1123(1128)
228 smart00638 LPD_N Lipoprotein N 92.1 12 0.00027 37.8 17.6 126 264-407 395-543 (574)
229 PF14500 MMS19_N: Dos2-interac 91.8 9 0.00019 34.1 15.2 212 144-368 4-237 (262)
230 PF12031 DUF3518: Domain of un 91.8 0.44 9.5E-06 40.7 5.5 82 154-235 139-230 (257)
231 KOG1992 Nuclear export recepto 91.6 18 0.00038 37.1 21.1 195 72-289 311-525 (960)
232 KOG2137 Protein kinase [Signal 91.6 2.6 5.6E-05 42.1 11.3 130 220-352 388-521 (700)
233 COG5218 YCG1 Chromosome conden 91.5 3.5 7.5E-05 40.2 11.6 123 124-255 78-201 (885)
234 PF11864 DUF3384: Domain of un 91.2 16 0.00034 35.8 16.8 90 313-408 230-329 (464)
235 COG5116 RPN2 26S proteasome re 91.2 16 0.00034 35.8 15.8 63 339-410 551-616 (926)
236 PF08324 PUL: PUL domain; Int 91.1 2.1 4.5E-05 38.4 9.7 156 264-419 65-241 (268)
237 KOG1020 Sister chromatid cohes 91.0 29 0.00062 38.4 30.5 381 8-411 814-1256(1692)
238 PF14726 RTTN_N: Rotatin, an a 90.8 2.6 5.7E-05 30.8 8.1 69 337-405 28-96 (98)
239 PF12031 DUF3518: Domain of un 90.6 0.87 1.9E-05 39.0 6.2 79 314-392 140-228 (257)
240 COG5218 YCG1 Chromosome conden 90.6 13 0.00029 36.4 14.5 109 180-295 91-200 (885)
241 KOG1949 Uncharacterized conser 90.4 16 0.00035 36.7 15.1 182 100-289 177-368 (1005)
242 PF01347 Vitellogenin_N: Lipop 90.2 7.6 0.00017 39.7 14.1 167 99-288 397-586 (618)
243 PRK09169 hypothetical protein; 90.0 43 0.00094 38.9 31.1 108 49-163 206-314 (2316)
244 KOG1788 Uncharacterized conser 89.9 30 0.00064 36.8 29.4 374 19-410 476-983 (2799)
245 PF01347 Vitellogenin_N: Lipop 89.9 11 0.00024 38.6 14.9 161 222-406 396-586 (618)
246 PF08324 PUL: PUL domain; Int 89.9 14 0.00031 33.0 15.5 178 182-359 65-265 (268)
247 PF10363 DUF2435: Protein of u 89.8 3.4 7.4E-05 29.9 8.0 70 9-84 2-73 (92)
248 PF12530 DUF3730: Protein of u 89.8 13 0.00028 32.5 17.1 127 65-208 12-150 (234)
249 PF10363 DUF2435: Protein of u 89.7 0.93 2E-05 32.8 5.0 68 303-371 8-76 (92)
250 PF14500 MMS19_N: Dos2-interac 89.3 15 0.00033 32.6 17.2 217 101-327 3-237 (262)
251 COG5656 SXM1 Importin, protein 89.2 28 0.0006 35.4 23.5 167 32-202 391-564 (970)
252 KOG0301 Phospholipase A2-activ 89.1 11 0.00023 37.6 12.8 173 269-452 551-742 (745)
253 PRK09169 hypothetical protein; 88.4 56 0.0012 38.1 31.0 39 420-460 705-743 (2316)
254 PF11865 DUF3385: Domain of un 88.1 10 0.00022 30.8 10.6 139 181-326 11-156 (160)
255 PF14225 MOR2-PAG1_C: Cell mor 88.1 19 0.0004 32.1 16.0 161 236-404 77-252 (262)
256 cd03568 VHS_STAM VHS domain fa 87.8 2.3 5E-05 33.8 6.5 73 340-412 38-113 (144)
257 PF12830 Nipped-B_C: Sister ch 86.6 18 0.00039 30.3 12.9 122 140-273 9-141 (187)
258 PF11865 DUF3385: Domain of un 86.3 7.4 0.00016 31.7 8.9 140 222-367 11-156 (160)
259 KOG2933 Uncharacterized conser 85.8 16 0.00036 32.8 11.1 145 4-167 82-233 (334)
260 KOG2933 Uncharacterized conser 85.0 12 0.00027 33.5 9.9 137 141-289 90-232 (334)
261 cd03568 VHS_STAM VHS domain fa 85.0 6.8 0.00015 31.2 7.9 71 140-210 38-111 (144)
262 cd03569 VHS_Hrs_Vps27p VHS dom 84.9 4 8.7E-05 32.4 6.5 74 339-412 41-117 (142)
263 cd03561 VHS VHS domain family; 84.3 6 0.00013 31.0 7.3 74 340-413 38-116 (133)
264 PF08506 Cse1: Cse1; InterPro 83.8 39 0.00085 31.9 18.9 232 154-404 111-370 (370)
265 PF08167 RIX1: rRNA processing 83.7 14 0.00029 30.3 9.4 99 339-438 25-126 (165)
266 PF12530 DUF3730: Protein of u 83.6 29 0.00064 30.3 19.0 192 147-352 9-216 (234)
267 PF13251 DUF4042: Domain of un 83.6 23 0.00049 29.5 10.6 102 266-368 44-174 (182)
268 PF08167 RIX1: rRNA processing 83.3 23 0.0005 29.0 10.6 113 6-125 21-142 (165)
269 cd03567 VHS_GGA VHS domain fam 83.1 4.9 0.00011 31.7 6.2 71 340-410 39-117 (139)
270 COG5656 SXM1 Importin, protein 83.0 59 0.0013 33.3 26.3 322 17-350 467-826 (970)
271 PF11707 Npa1: Ribosome 60S bi 82.5 42 0.0009 31.2 22.8 156 99-254 58-241 (330)
272 KOG1992 Nuclear export recepto 81.1 73 0.0016 33.0 23.1 198 154-368 308-527 (960)
273 KOG1848 Uncharacterized conser 80.6 52 0.0011 36.1 14.0 73 7-83 793-871 (1610)
274 cd03567 VHS_GGA VHS domain fam 80.3 13 0.00029 29.3 7.7 70 140-209 39-116 (139)
275 KOG0301 Phospholipase A2-activ 80.1 59 0.0013 32.7 13.3 155 147-308 552-726 (745)
276 cd03561 VHS VHS domain family; 80.0 16 0.00035 28.6 8.2 71 141-211 39-114 (133)
277 PF00790 VHS: VHS domain; Int 79.6 14 0.00031 29.2 8.0 71 49-125 43-117 (140)
278 PF14726 RTTN_N: Rotatin, an a 79.4 22 0.00048 26.1 8.9 68 137-204 28-95 (98)
279 smart00638 LPD_N Lipoprotein N 79.4 75 0.0016 32.2 18.9 230 141-401 313-570 (574)
280 cd03569 VHS_Hrs_Vps27p VHS dom 79.1 16 0.00034 29.1 7.9 70 140-209 42-114 (142)
281 smart00288 VHS Domain present 78.0 9.1 0.0002 30.0 6.3 72 340-411 38-113 (133)
282 KOG1949 Uncharacterized conser 76.9 91 0.002 31.8 20.8 188 177-367 126-330 (1005)
283 PF10521 DUF2454: Protein of u 76.1 34 0.00074 30.9 10.3 70 98-167 120-202 (282)
284 KOG1788 Uncharacterized conser 76.0 1.2E+02 0.0026 32.7 17.3 243 118-368 663-982 (2799)
285 PF04869 Uso1_p115_head: Uso1 75.1 68 0.0015 29.4 15.7 156 49-209 35-231 (312)
286 PF08389 Xpo1: Exportin 1-like 74.2 29 0.00062 27.4 8.6 106 6-121 22-148 (148)
287 smart00288 VHS Domain present 73.8 27 0.00058 27.4 7.9 69 141-209 39-111 (133)
288 PF10521 DUF2454: Protein of u 73.5 35 0.00075 30.9 9.7 65 262-326 119-202 (282)
289 PF10274 ParcG: Parkin co-regu 73.4 52 0.0011 27.3 9.7 76 301-376 41-118 (183)
290 PF13251 DUF4042: Domain of un 73.1 36 0.00079 28.3 8.8 104 146-251 47-175 (182)
291 PF08216 CTNNBL: Catenin-beta- 72.9 7.7 0.00017 28.8 4.3 41 157-197 64-104 (108)
292 KOG2676 Uncharacterized conser 72.6 7.4 0.00016 35.5 4.9 63 74-137 376-440 (478)
293 PF01603 B56: Protein phosphat 72.4 95 0.0021 29.9 12.7 245 74-328 110-371 (409)
294 KOG1822 Uncharacterized conser 71.1 2E+02 0.0044 33.2 22.3 292 25-327 799-1127(2067)
295 PF14666 RICTOR_M: Rapamycin-i 70.1 73 0.0016 27.6 13.6 129 194-326 78-224 (226)
296 PF14631 FancD2: Fanconi anaem 69.9 2.1E+02 0.0045 32.7 21.2 337 7-368 189-587 (1426)
297 PF12830 Nipped-B_C: Sister ch 69.8 65 0.0014 27.0 12.4 142 264-411 10-169 (187)
298 KOG0392 SNF2 family DNA-depend 68.0 19 0.00042 38.8 7.3 111 8-125 814-924 (1549)
299 KOG1791 Uncharacterized conser 68.0 1.1E+02 0.0023 34.4 12.7 118 134-251 1535-1661(1758)
300 PF06685 DUF1186: Protein of u 67.4 88 0.0019 27.6 15.2 153 7-184 28-201 (249)
301 PF12054 DUF3535: Domain of un 65.7 1.4E+02 0.003 29.1 14.0 236 25-273 102-365 (441)
302 PF11864 DUF3384: Domain of un 65.6 1.4E+02 0.0031 29.3 21.8 74 68-149 43-117 (464)
303 PF00790 VHS: VHS domain; Int 65.6 66 0.0014 25.4 9.1 69 141-209 44-118 (140)
304 PF11229 DUF3028: Protein of u 65.1 1.3E+02 0.0027 29.5 11.4 229 8-251 95-354 (589)
305 PF06012 DUF908: Domain of Unk 64.7 52 0.0011 30.5 9.1 75 154-228 237-323 (329)
306 PF08216 CTNNBL: Catenin-beta- 63.7 7.5 0.00016 28.9 2.6 42 316-357 64-105 (108)
307 PF11791 Aconitase_B_N: Aconit 62.5 20 0.00043 28.5 4.8 37 382-418 96-132 (154)
308 PLN03076 ARF guanine nucleotid 62.3 3.1E+02 0.0068 32.1 19.2 256 150-411 1148-1491(1780)
309 KOG1410 Nuclear transport rece 61.8 1.4E+02 0.003 30.4 11.2 140 265-408 8-156 (1082)
310 cd03565 VHS_Tom1 VHS domain fa 61.6 53 0.0012 26.0 7.4 72 340-411 39-117 (141)
311 cd03572 ENTH_epsin_related ENT 61.1 39 0.00085 25.9 6.2 70 340-409 39-119 (122)
312 KOG2199 Signal transducing ada 61.1 31 0.00066 32.1 6.4 73 339-411 45-120 (462)
313 PLN03205 ATR interacting prote 60.7 1.5E+02 0.0033 27.9 11.6 167 181-348 324-544 (652)
314 PF14663 RasGEF_N_2: Rapamycin 59.5 42 0.00091 25.5 6.2 40 140-179 9-48 (115)
315 PF08506 Cse1: Cse1; InterPro 58.9 1.6E+02 0.0036 27.8 20.0 150 132-286 203-370 (370)
316 KOG0413 Uncharacterized conser 57.2 77 0.0017 33.6 9.1 124 23-167 944-1072(1529)
317 PF14631 FancD2: Fanconi anaem 56.5 3.6E+02 0.0078 30.9 24.4 129 269-399 442-573 (1426)
318 KOG1791 Uncharacterized conser 56.2 3.4E+02 0.0073 30.9 13.8 200 89-289 1431-1658(1758)
319 PF13001 Ecm29: Proteasome sta 55.7 1.5E+02 0.0033 29.4 11.0 190 13-212 240-446 (501)
320 PF14225 MOR2-PAG1_C: Cell mor 54.5 1.6E+02 0.0035 26.3 20.4 150 195-352 77-241 (262)
321 cd08050 TAF6 TATA Binding Prot 52.3 2E+02 0.0044 26.9 11.8 107 181-289 211-338 (343)
322 cd08050 TAF6 TATA Binding Prot 52.3 2E+02 0.0044 26.9 11.0 150 8-167 176-339 (343)
323 cd03572 ENTH_epsin_related ENT 50.3 74 0.0016 24.5 6.1 52 7-58 35-92 (122)
324 KOG2005 26S proteasome regulat 50.3 3E+02 0.0064 28.2 16.8 234 179-426 47-315 (878)
325 cd00197 VHS_ENTH_ANTH VHS, ENT 49.5 86 0.0019 23.6 6.6 69 340-408 38-114 (115)
326 PF12783 Sec7_N: Guanine nucle 49.4 1.4E+02 0.003 24.3 8.3 71 9-84 72-147 (168)
327 KOG1410 Nuclear transport rece 49.3 3.1E+02 0.0067 28.1 21.4 261 50-327 7-334 (1082)
328 KOG2676 Uncharacterized conser 47.8 25 0.00053 32.3 3.7 60 359-418 376-439 (478)
329 PF10274 ParcG: Parkin co-regu 47.7 1.7E+02 0.0036 24.5 9.8 74 139-213 38-113 (183)
330 KOG0413 Uncharacterized conser 47.2 78 0.0017 33.5 7.4 92 195-295 946-1039(1529)
331 KOG1848 Uncharacterized conser 47.0 4.7E+02 0.01 29.5 14.5 215 191-409 853-1132(1610)
332 PF04064 DUF384: Domain of unk 46.5 80 0.0017 20.5 5.2 49 363-411 2-51 (58)
333 PF12231 Rif1_N: Rap1-interact 46.2 2.7E+02 0.0058 26.4 21.2 250 152-408 59-351 (372)
334 cd00197 VHS_ENTH_ANTH VHS, ENT 46.1 1.3E+02 0.0027 22.7 7.9 68 140-207 38-113 (115)
335 PF11229 DUF3028: Protein of u 45.6 3.1E+02 0.0067 27.0 13.6 153 4-168 192-353 (589)
336 PF11791 Aconitase_B_N: Aconit 45.0 59 0.0013 25.9 5.0 26 264-289 96-121 (154)
337 PF01365 RYDR_ITPR: RIH domain 44.6 81 0.0018 26.9 6.4 117 88-209 34-169 (207)
338 PF12726 SEN1_N: SEN1 N termin 44.6 3.7E+02 0.008 28.3 12.3 110 144-255 446-557 (727)
339 PF13001 Ecm29: Proteasome sta 44.3 3.4E+02 0.0073 27.1 17.2 172 231-410 247-444 (501)
340 PF06012 DUF908: Domain of Unk 44.0 1.4E+02 0.0031 27.7 8.3 72 355-426 238-314 (329)
341 KOG2149 Uncharacterized conser 43.7 1.8E+02 0.0039 27.5 8.6 110 181-290 59-169 (393)
342 PF01365 RYDR_ITPR: RIH domain 43.7 1.5E+02 0.0034 25.1 8.0 116 130-250 34-169 (207)
343 KOG2073 SAP family cell cycle 43.6 85 0.0018 33.0 7.2 177 49-231 191-375 (838)
344 KOG0392 SNF2 family DNA-depend 43.3 5.1E+02 0.011 28.9 17.0 235 8-251 75-326 (1549)
345 KOG2038 CAATT-binding transcri 42.7 4.2E+02 0.009 27.7 23.1 105 97-211 304-411 (988)
346 KOG4231 Intracellular membrane 42.3 22 0.00047 34.3 2.6 64 306-369 336-400 (763)
347 COG5537 IRR1 Cohesin [Cell div 42.3 3.5E+02 0.0076 27.3 10.5 131 230-368 284-422 (740)
348 PF14666 RICTOR_M: Rapamycin-i 42.2 2.3E+02 0.005 24.6 13.8 127 153-290 78-224 (226)
349 PF01603 B56: Protein phosphat 41.9 3.3E+02 0.0071 26.3 18.8 185 8-203 131-320 (409)
350 cd03565 VHS_Tom1 VHS domain fa 41.5 1.8E+02 0.0039 23.1 8.4 69 141-209 40-115 (141)
351 PF12726 SEN1_N: SEN1 N termin 40.8 4.6E+02 0.0099 27.6 31.5 132 301-433 444-580 (727)
352 PF04388 Hamartin: Hamartin pr 40.5 3.2E+02 0.007 28.4 10.8 58 311-368 81-140 (668)
353 PF07571 DUF1546: Protein of u 40.3 1.4E+02 0.003 21.5 6.4 57 23-83 19-78 (92)
354 PF12231 Rif1_N: Rap1-interact 40.3 3.3E+02 0.0071 25.8 24.5 299 20-326 3-351 (372)
355 KOG2149 Uncharacterized conser 39.8 2.2E+02 0.0049 26.9 8.6 110 141-251 60-171 (393)
356 PF08389 Xpo1: Exportin 1-like 39.1 1.9E+02 0.004 22.6 10.0 118 237-363 4-148 (148)
357 PF03130 HEAT_PBS: PBS lyase H 38.4 44 0.00095 17.5 2.4 26 26-58 1-26 (27)
358 PF12783 Sec7_N: Guanine nucle 38.1 2.2E+02 0.0048 23.2 7.9 81 137-219 71-157 (168)
359 PF04388 Hamartin: Hamartin pr 37.9 3.5E+02 0.0076 28.1 10.7 59 193-251 81-141 (668)
360 KOG1086 Cytosolic sorting prot 37.3 3.8E+02 0.0083 25.7 11.6 108 307-414 54-207 (594)
361 KOG2011 Sister chromatid cohes 35.5 5.4E+02 0.012 28.2 11.4 128 231-365 297-432 (1048)
362 KOG2005 26S proteasome regulat 35.2 5.2E+02 0.011 26.6 16.0 84 281-371 622-707 (878)
363 KOG4524 Uncharacterized conser 34.3 1.3E+02 0.0028 31.9 6.7 93 180-272 803-899 (1014)
364 PF12765 Cohesin_HEAT: HEAT re 34.1 25 0.00054 21.0 1.2 25 380-404 18-42 (42)
365 KOG4231 Intracellular membrane 33.3 57 0.0012 31.6 3.8 68 224-291 331-399 (763)
366 PLN03076 ARF guanine nucleotid 32.9 9E+02 0.019 28.7 23.7 269 8-290 1135-1488(1780)
367 KOG2549 Transcription initiati 31.9 5.3E+02 0.011 25.7 11.5 146 141-289 209-368 (576)
368 PLN03205 ATR interacting prote 31.7 4.6E+02 0.0099 24.9 11.5 111 99-210 325-447 (652)
369 PF06685 DUF1186: Protein of u 31.5 3.7E+02 0.008 23.8 15.0 96 195-307 57-159 (249)
370 KOG0891 DNA-dependent protein 31.3 1.1E+03 0.023 29.0 17.5 201 93-295 561-767 (2341)
371 KOG1087 Cytosolic sorting prot 30.9 2E+02 0.0043 28.2 7.1 70 339-408 38-111 (470)
372 PF07571 DUF1546: Protein of u 30.7 1.5E+02 0.0031 21.5 4.9 58 232-289 17-76 (92)
373 KOG1822 Uncharacterized conser 30.7 9.6E+02 0.021 28.3 21.0 236 45-293 872-1129(2067)
374 KOG2199 Signal transducing ada 30.5 1.8E+02 0.0038 27.4 6.3 71 181-251 46-119 (462)
375 PF14663 RasGEF_N_2: Rapamycin 30.2 2.4E+02 0.0053 21.3 8.7 39 262-300 8-46 (115)
376 KOG4524 Uncharacterized conser 30.0 3.1E+02 0.0067 29.4 8.5 92 8-106 801-898 (1014)
377 PF11935 DUF3453: Domain of un 29.5 3.9E+02 0.0084 23.4 14.9 138 270-412 1-197 (239)
378 PF08713 DNA_alkylation: DNA a 29.1 1.5E+02 0.0032 25.2 5.7 72 301-378 123-195 (213)
379 PF12054 DUF3535: Domain of un 28.5 5.7E+02 0.012 25.0 13.3 56 4-59 119-179 (441)
380 PF03685 UPF0147: Uncharacteri 27.7 2.3E+02 0.0049 20.2 5.9 56 24-83 5-62 (85)
381 PF07923 N1221: N1221-like pro 26.5 1.2E+02 0.0027 27.5 4.9 51 299-349 61-126 (293)
382 KOG1993 Nuclear transport rece 25.4 8.2E+02 0.018 25.9 18.9 287 113-408 503-811 (978)
383 PF07923 N1221: N1221-like pro 25.4 1.2E+02 0.0025 27.7 4.5 52 180-231 60-126 (293)
384 PHA02975 hypothetical protein; 24.7 74 0.0016 21.3 2.1 24 1-24 13-36 (69)
385 PHA03054 IMV membrane protein; 24.1 65 0.0014 21.7 1.8 24 1-24 13-36 (72)
386 KOG1087 Cytosolic sorting prot 23.4 2.6E+02 0.0057 27.4 6.5 67 140-206 39-109 (470)
387 PF09450 DUF2019: Domain of un 23.2 63 0.0014 24.0 1.9 28 98-125 48-75 (106)
388 PF04499 SAPS: SIT4 phosphatas 23.0 5.5E+02 0.012 25.4 8.7 75 175-249 57-147 (475)
389 PF08713 DNA_alkylation: DNA a 22.5 4.3E+02 0.0094 22.3 7.4 70 9-88 119-188 (213)
390 KOG0891 DNA-dependent protein 22.4 1.2E+03 0.027 28.5 12.3 148 260-411 563-721 (2341)
391 PHA02650 hypothetical protein; 22.3 83 0.0018 21.7 2.1 23 1-23 13-35 (81)
392 KOG2038 CAATT-binding transcri 21.9 9.5E+02 0.021 25.3 20.4 101 222-327 305-409 (988)
393 PHA02692 hypothetical protein; 21.5 86 0.0019 21.1 2.0 22 1-22 13-34 (70)
394 PF12463 DUF3689: Protein of u 21.4 6.4E+02 0.014 23.1 12.6 120 132-251 2-174 (303)
395 PF09758 FPL: Uncharacterised 21.2 2.6E+02 0.0057 22.4 5.0 121 87-207 16-147 (149)
396 smart00567 EZ_HEAT E-Z type HE 21.0 1.5E+02 0.0032 15.7 3.1 24 395-419 2-25 (30)
397 PF07539 DRIM: Down-regulated 20.7 1.8E+02 0.0039 23.0 4.1 32 7-38 14-45 (141)
398 PF12575 DUF3753: Protein of u 20.4 91 0.002 21.2 2.0 24 1-24 13-36 (72)
399 KOG2153 Protein involved in th 20.1 9.5E+02 0.021 24.6 9.9 85 281-367 304-391 (704)
No 1
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-42 Score=296.22 Aligned_cols=425 Identities=34% Similarity=0.431 Sum_probs=383.9
Q ss_pred HHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhc
Q 044999 26 LQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRL 105 (461)
Q Consensus 26 ~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l 105 (461)
.+..|+.++..+.....++.-++.+.+++-++++ .|+.+|..+..++.+++. +.+++-.+++-++++.|+.-
T Consensus 63 lqrsaalafAeitek~vr~Vsres~epvl~llqs------~d~~Iq~aa~~alGnlAV--n~enk~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 63 LQRSAALAFAEITEKGVRRVSRESNEPVLALLQS------CDKCIQCAAGEALGNLAV--NMENKGLIVSLLGLDLLILQ 134 (550)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhC------cchhhhhhhhhhhcccee--ccCCceEEEeccChHHHHHH
Confidence 3344444444444222333323377888888886 567899999999999999 78888888999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH
Q 044999 106 FPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL 185 (461)
Q Consensus 106 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l 185 (461)
+..+...+|..+..|+.+++.. .+++..+...|++..+.++-++.+..+|+++..+|.+++...++|+.++..|++|.|
T Consensus 135 mmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvL 213 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVL 213 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhh
Confidence 8888888899999999999977 589999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCC
Q 044999 186 VEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGA 263 (461)
Q Consensus 186 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 263 (461)
+.++++++.++|++++.++++++.....++.+.+.+ .++.|++++.++++.++..|..+|++++.+.+++..+++.|.
T Consensus 214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~ 293 (550)
T KOG4224|consen 214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGS 293 (550)
T ss_pred hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCC
Confidence 999999999999999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhC-CCCchhHHh
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----EHLVRILREGD-NEANAAAADVLWDLAG-YKHSVPVIR 336 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~-~~~~~~~l~ 336 (461)
+|.++++++++..........++.|++.++-+...++ .+|+++|+.++ ++++.+|...|++|+. +..++..+.
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 9999999998877777778889999999998877776 78999998775 6699999999999995 788999999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999 337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416 (461)
Q Consensus 337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 416 (461)
+.|.+|.+++++.+++..+|.....++..|+.++..+..+.+.|++|.|+.+..+.+.+++.+++.+|.|++.+-++-..
T Consensus 374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred hcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999889
Q ss_pred HHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999 417 ISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD 460 (461)
Q Consensus 417 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 460 (461)
+.|+-+.|. +-+...+.++..+++.+++..++-+|.|+.-++|
T Consensus 454 viEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 454 VIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999988888 8899999999999999999999999999876665
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2e-38 Score=331.98 Aligned_cols=435 Identities=21% Similarity=0.238 Sum_probs=365.3
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C-CCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVS-K-FAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~-~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
..++.++.+++++++.++..|+.++.+++ + +..+..+.+ +||.|+++|++ + +++.+|.+|+++|.+|+.+
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s----g-~~~~VRE~AA~AL~nLAs~- 262 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ----G-NEVSVRAEAAGALEALSSQ- 262 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc----C-CChHHHHHHHHHHHHHhcC-
Confidence 37899999999999999999999999888 4 557776666 99999999985 4 3467888899999999996
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCH---------HHHHHHHHHHHHHhccChh--------------------------
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDD---------SFRTVLVKCLRVFVTFGNE-------------------------- 130 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~---------~~~~~~~~~l~~l~~~~~~-------------------------- 130 (461)
+.+.+..+.+.|+++.|++++.+++. ..++.+++++.|++.+...
T Consensus 263 s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALa 342 (2102)
T PLN03200 263 SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALA 342 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHH
Confidence 78899999999999999999976543 3478888888887753111
Q ss_pred -----------------------------------------------------hHHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999 131 -----------------------------------------------------NRVIVARNGGLEIVIDLLNSCNDGTRR 157 (461)
Q Consensus 131 -----------------------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~~~~ 157 (461)
.+..+...|+++.|+.++...+.+++.
T Consensus 343 yll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~ 422 (2102)
T PLN03200 343 YALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE 422 (2102)
T ss_pred HHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence 011122334555566666666678899
Q ss_pred HHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999 158 YLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW 235 (461)
Q Consensus 158 ~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~ 235 (461)
.+++.|.+++ .+.+.++.+.+.|+++.|+++|.+++...+..+++++++++...+. +..+.+.|++|.|+++|.+++.
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~ 502 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ 502 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 9999999999 6678889999999999999999999999999999999999987765 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH------------------
Q 044999 236 TTKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA------------------ 296 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------------------ 296 (461)
.+++.|+++|.|++.++++ +..+.+.|+++.|+++|++++++.++.++++|.|+....+..
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~ 582 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKV 582 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHH
Confidence 9999999999999998544 444557899999999999999999999999999995322211
Q ss_pred -------------------HHH------HHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcC
Q 044999 297 -------------------NAI------AEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 297 -------------------~~i------~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
... .+.|+++++++++++++.|+++|.+++.+ ++....++..|+++.++.++++
T Consensus 583 ~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss 662 (2102)
T PLN03200 583 HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN 662 (2102)
T ss_pred HHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 000 07899999999999999999999999954 6778889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHh
Q 044999 351 ENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQS 428 (461)
Q Consensus 351 ~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~ 428 (461)
++.++++.++++|.+++. +.+++..+++.|++++|++++++++.+++..++.+|.|++.+++++..+.+.++++.+.+
T Consensus 663 ~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~ 742 (2102)
T PLN03200 663 NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR 742 (2102)
T ss_pred CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence 999999999999999997 556677889999999999999999999999999999999999999988888888777776
Q ss_pred HHHHHHHhhhchhHHHHHHHHHhHhhhcc
Q 044999 429 MQSRLTRIRASDDLMARSMRRMSIEQLTW 457 (461)
Q Consensus 429 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
++. ++ +...|+.|-.++.++..
T Consensus 743 lLr------~G-~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 743 VLR------EG-TLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHH------hC-ChHHHHHHHHHHHHHHh
Confidence 665 43 56677777777776654
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=328.82 Aligned_cols=438 Identities=18% Similarity=0.203 Sum_probs=361.8
Q ss_pred HHhHHHHHHHhhcC---CHHHHHHHHHHHHhhc-CCCch-hHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 9 EEAFNRFEQAVVSG---SEALQVKALTKLARVS-KFAPQ-DILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 9 ~~~~~~l~~ll~~~---~~~~~~~a~~~l~~la-~~~~~-~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
++.+|.|+.++.++ |..++..|+.+|.+|+ +.+++ ..+.+ ++|.++++|++ +++..|..|+.+|.++
T Consensus 143 ~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS------~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 143 EGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS------GNSDAQANAASLLARL 216 (2102)
T ss_pred cCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHH
Confidence 67789999999987 4457788899999999 55554 44444 99999999986 5678999999999999
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC--------
Q 044999 82 ASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-------- 152 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-------- 152 (461)
+.. .++.+..+.+.|+++.|+++|+++ ++.++..|++++.+++.++++++..+.+.|+++.|++++..++
T Consensus 217 ass-~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~ 295 (2102)
T PLN03200 217 MMA-FESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEF 295 (2102)
T ss_pred HcC-ChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhcccc
Confidence 975 566888899999999999999864 5688999999999999999999999999999999999997544
Q ss_pred -hHHHHHHHHHHHHhhCChHH-----------------------------------------------------------
Q 044999 153 -DGTRRYLLEILSALALLREV----------------------------------------------------------- 172 (461)
Q Consensus 153 -~~~~~~a~~~L~~l~~~~~~----------------------------------------------------------- 172 (461)
..+++.|.++|.|+|.+...
T Consensus 296 ~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~ 375 (2102)
T PLN03200 296 AQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRD 375 (2102)
T ss_pred chHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCC
Confidence 24588999999998853100
Q ss_pred ---------------------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhc
Q 044999 173 ---------------------RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELF 230 (461)
Q Consensus 173 ---------------------~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll 230 (461)
+..+.+.++++.|+.++...+.+++..++++|++++.++.. ++.+.+.|+++.|+++|
T Consensus 376 p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL 455 (2102)
T PLN03200 376 TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLL 455 (2102)
T ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHH
Confidence 00111223445555566666678899999999999988666 89999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHH
Q 044999 231 HIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHL 303 (461)
Q Consensus 231 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l 303 (461)
.+++...++.++++|++++.. ++++..+++.|++|.|+++|.+++..+++.|+++|.|++.++++...++ +.|
T Consensus 456 ~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 456 GLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHH
Confidence 999999999999999999986 6788899999999999999999999999999999999998776554443 899
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCch--------------------------------------hHHhhcCCHHHHH
Q 044999 304 VRILREGDNEANAAAADVLWDLAGYKHSV--------------------------------------PVIRNSGAIPILV 345 (461)
Q Consensus 304 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------------------------~~l~~~g~i~~L~ 345 (461)
+++|++++++.+..|+++|.+++.+.+.. ......|+++.|+
T Consensus 536 V~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv 615 (2102)
T PLN03200 536 LWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLI 615 (2102)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHH
Confidence 99999999999999999999996322110 1112468999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC--cchHHHHHhhC
Q 044999 346 NLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP--LQHERISEAIG 422 (461)
Q Consensus 346 ~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~~~ 422 (461)
+++.++++.+++.|+++|.+++. +++....++..|++++|+.++++++.+++..++++|.+++... +++..+.+.|.
T Consensus 616 ~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 616 QLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDA 695 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCC
Confidence 99999999999999999999999 8888899999999999999999999999999999999998543 34456677777
Q ss_pred CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999 423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD 460 (461)
Q Consensus 423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 460 (461)
++.+.++++ ++ +..++..+-.++.++.-+||
T Consensus 696 V~pL~~LL~------~~-d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 696 IKPLIKLAK------SS-SIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHh------CC-ChHHHHHHHHHHHHHHcCch
Confidence 777666554 33 55677888888888887775
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-37 Score=263.18 Aligned_cols=411 Identities=21% Similarity=0.245 Sum_probs=364.0
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
+..+++.-++.+.++.++..|..++++++ +.+++-.+.+ .+..|+..+-. +...+|+.++.++.+|+. .
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt------d~vevqcnaVgCitnLaT--~ 156 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT------DGVEVQCNAVGCITNLAT--F 156 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC------CCcEEEeeehhhhhhhhc--c
Confidence 44577888899999999999999999999 9998888888 77776655443 233488889999999999 7
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
++++..+...|++.++.++-++.+..+|..+..++.++. +..++|+.++..|++|.|+.++.+.++++|.+++.++.++
T Consensus 157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 889999999999999999999999999999999999999 6779999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHhcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 167 ALLREVRRVLICLG--GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 167 ~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
+.+...|+.+.+.+ .++.|++++.++++.++..|.-+|++++...+.+..+++.|.+|.++++++++........+.+
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC 315 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVAC 315 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence 99999999999988 9999999999999999999999999999999999999999999999999998887777778889
Q ss_pred HHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhcc-CcccHHHHH-----HHHHHHhccCCHHHHHH
Q 044999 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAV-SEANANAIA-----EHLVRILREGDNEANAA 317 (461)
Q Consensus 245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~-----~~l~~ll~~~~~~~~~~ 317 (461)
++|++.++-+...+++.|++..|+.++... +++++-+|..+|.||+. ...++..+. +.+..++.++.-+++..
T Consensus 316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence 999999999999999999999999999987 45699999999999965 666777776 99999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC------CChHHHHHhccC
Q 044999 318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA------GAVPIMIELLHD 391 (461)
Q Consensus 318 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~i~~L~~ll~~ 391 (461)
.-.++..|+-++..+..+.+.|.++.|+.+..+.+.+++..++.+|.|++.+-++-.+++++ |+-..|++++.+
T Consensus 396 isac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S 475 (550)
T KOG4224|consen 396 ISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLAS 475 (550)
T ss_pred HHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999977766777653 445678888888
Q ss_pred CCHHHHHHHHHHHHHhcCCCcch-HHHHHhhCCchHHhHHH
Q 044999 392 ESEELRDNAAESLINFSEDPLQH-ERISEAIGIPSFQSMQS 431 (461)
Q Consensus 392 ~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~~~~~~~~~l~~ 431 (461)
....++.-+.|.+..|..+...+ ..+.+ ....+.++.+
T Consensus 476 ~~~tf~hia~wTI~qLle~h~~~~~~~i~--~~ddii~~~~ 514 (550)
T KOG4224|consen 476 HELTFRHIARWTIQQLLEDHDLPLTAFIQ--SSDDIIELLN 514 (550)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccHHHHHh--CchhHHHHHH
Confidence 88899999999999998776543 33332 3334444443
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-34 Score=262.74 Aligned_cols=377 Identities=18% Similarity=0.214 Sum_probs=327.2
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~ 127 (461)
..+..+..+.+ +++..|..+...+..+.+.+.......+...|.++.+|..|. +.++.++..+++++.+++..
T Consensus 67 ~~~~~~~~~~S------~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 67 NLELMLAALYS------DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred hhHHHHHHHhC------CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 46777777776 566778888888888887533344455556699999999997 55699999999999999999
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM-VSRERACQAIG 205 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~a~~~L~ 205 (461)
..+.-..+++.|+++.|+.++.+++..+++.|+++|+|++ ..+..|..+++.|.++.|+.++...+. ...+.+.++|.
T Consensus 141 tse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred chhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence 9899999999999999999999999999999999999999 678889999999999999999988866 78899999999
Q ss_pred HhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHH
Q 044999 206 LLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISE 283 (461)
Q Consensus 206 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~ 283 (461)
||+.+... ...-.-..++|.|..++.+.|+++...|++++.+|+.+ ++.-..+++.|+++.|+.+|...++.++..|+
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPAL 300 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHH
Confidence 99998843 22222245899999999999999999999999999988 77778888999999999999999999999999
Q ss_pred HHHHHhccCcccHHHHH------HHHHHHhc-cCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999 284 DVFCILAVSEANANAIA------EHLVRILR-EGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEV 355 (461)
Q Consensus 284 ~~L~~l~~~~~~~~~i~------~~l~~ll~-~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v 355 (461)
++++|++.+.+.+.+.+ +.+..++. +....++.+|+|++.|++. +.+..+.+++.|++|.|+.++++.+.++
T Consensus 301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 99999988888777665 88888887 4566699999999999995 5678899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc---------hHHHHHhhCCc
Q 044999 356 REKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ---------HERISEAIGIP 424 (461)
Q Consensus 356 ~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------~~~l~~~~~~~ 424 (461)
|++|+|++.|++. +++.-..+++.|+|+++..++...+..+...+..++.|+....+. ...+.+++|..
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld 460 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD 460 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh
Confidence 9999999999999 777778889999999999999888999999999999998654432 34677888998
Q ss_pred hHHhHHH
Q 044999 425 SFQSMQS 431 (461)
Q Consensus 425 ~~~~l~~ 431 (461)
.+..++.
T Consensus 461 kiE~LQ~ 467 (514)
T KOG0166|consen 461 KIENLQS 467 (514)
T ss_pred HHHHhhc
Confidence 8887775
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=246.58 Aligned_cols=394 Identities=18% Similarity=0.226 Sum_probs=335.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 12 FNRFEQAVVSGSEALQVKALTKLARVS----KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 12 ~~~l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
.+..+..+.|.++..+..+...+..+. ++.....+.. ++|.++..|.. + +++..|..|+++|.+++.+ .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~----~-~~~~lq~eAAWaLTnIAsg-t 141 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR----D-DNPTLQFEAAWALTNIASG-T 141 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc----C-CChhHHHHHHHHHHHHhcC-c
Confidence 577788888999988988888888777 3333445555 99999999985 3 4688999999999999997 6
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSA 165 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~ 165 (461)
.+....+.+.|.++.+++++.+++..++.++++++.+++.+++.+|..+...|+++.|+.++...++ .....+.++|.|
T Consensus 142 se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 142 SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN 221 (514)
T ss_pred hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH
Confidence 6777788899999999999999999999999999999999999999999999999999999988776 788999999999
Q ss_pred hhCChHHHHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999 166 LALLREVRRV-LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGN 243 (461)
Q Consensus 166 l~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 243 (461)
+|.+...... -.-..+++.|..++.+.|+++...|++++.+|+..... -+.+.+.|+++.|+++|.+.+..++..|++
T Consensus 222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 9955432222 22245799999999999999999999999999988777 788999999999999999999999999999
Q ss_pred HHHHHhcC-ccchhhhhhcCCHHHHHHHhCC-CChhHHHHHHHHHHHhccCcc-cHHHHH-----HHHHHHhccCCHHHH
Q 044999 244 TLGVVAAH-VEYITPVAEAGAIPLYAELLQG-PDSTGKEISEDVFCILAVSEA-NANAIA-----EHLVRILREGDNEAN 315 (461)
Q Consensus 244 ~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~-~~~~i~-----~~l~~ll~~~~~~~~ 315 (461)
+++|+... +.....++..|++|.|..++.. ....+++.|++++.|++.+.. ....+. |.|+++|.+++..+|
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r 381 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR 381 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence 99999888 5666777888999999999984 456699999999999966544 333343 999999999999999
Q ss_pred HHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C--------hhhHHHHHhCCChHH
Q 044999 316 AAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N--------EADRVALADAGAVPI 384 (461)
Q Consensus 316 ~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~--------~~~~~~~~~~~~i~~ 384 (461)
.+|++++.|++.. ++....+++.|+++.++.+|.-.+..+...++.+|.++-. . ......+-++||+..
T Consensus 382 KEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9999999999954 6677888899999999999988888888888888887766 2 223456678999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 385 MIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 385 L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
+-.+-.+.+.++-..|...+..--..+
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999888999999999999998875543
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-31 Score=226.16 Aligned_cols=375 Identities=15% Similarity=0.176 Sum_probs=314.6
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~ 127 (461)
-+|.+.+.|.+ +|.+.|..|..-...+.+.........+.+.|++|.++++|+. ...-.+-.+++++.++++.
T Consensus 72 elp~lt~~l~S------dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 72 ELPQLTQQLFS------DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hhHHHHHHHhh------hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccC
Confidence 78999988876 6777777777777777664344456677899999999999954 4455678899999999987
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS--MVSRERACQAI 204 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~a~~~L 204 (461)
.....+.+++.|++|.++.+|.+.+.++++.++++|.|++ ..+..|..+.+.|.++.++.++.+.. ..+.+.+.++|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 7666778889999999999999999999999999999999 56777889999999999999998774 47888999999
Q ss_pred HHhhcCch---hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHH
Q 044999 205 GLLAVTGR---ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKE 280 (461)
Q Consensus 205 ~~l~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 280 (461)
.||+.... ++..+.. .+|.|.+++.+.++++...|++++.+|+.. .+....+++.|+.+.|+++|.+++..++.
T Consensus 226 SNlcRGknP~P~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 99997653 2555544 799999999999999999999999999998 55667788889999999999999999999
Q ss_pred HHHHHHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCH
Q 044999 281 ISEDVFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGEND 353 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~ 353 (461)
.+++...|+....+.+.+++ +.+..+|.++...++..||+.+.|++ .+.+..+.+++.+.+|.|+.+|.+.+.
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99999999987777766655 78888899998999999999999999 457788889999999999999999999
Q ss_pred HHHHHHHHHHHHhcC----ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc------------chHHH
Q 044999 354 EVREKVSGAIAQLSY----NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL------------QHERI 417 (461)
Q Consensus 354 ~v~~~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------~~~~l 417 (461)
.+++.|+|++.|.+. .|+.-..+++.|++.+|..++...+..+-+.++.++.|+..-.+ ....+
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~v 463 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYV 463 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHH
Confidence 999999999999988 45667788899999999999977666666666777777754432 12334
Q ss_pred HHhhCCchHHhHHH
Q 044999 418 SEAIGIPSFQSMQS 431 (461)
Q Consensus 418 ~~~~~~~~~~~l~~ 431 (461)
.++||...+..+++
T Consensus 464 E~Aggmd~I~~~Q~ 477 (526)
T COG5064 464 EKAGGMDAIHGLQD 477 (526)
T ss_pred HhcccHHHHHHhhh
Confidence 44777777666554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-30 Score=220.04 Aligned_cols=403 Identities=18% Similarity=0.198 Sum_probs=330.3
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---C-CCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---K-FAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA 82 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~-~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~ 82 (461)
....+|.+.+.+.|.|-+.+..|..-+..+. + +.....+.. ++|.+++++.. . ...-.|..|+++|.+++
T Consensus 69 ~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~----~-q~~mlqfEAaWalTNia 143 (526)
T COG5064 69 FYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE----I-QRDMLQFEAAWALTNIA 143 (526)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh----c-chhHHHHHHHHHHhhhc
Confidence 4456788999999999999999988777665 3 333444555 99999999964 2 22345666999999999
Q ss_pred hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh--HHHHHHH
Q 044999 83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND--GTRRYLL 160 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~~~~~a~ 160 (461)
++ ...-...+++.|.+|.++++|.+++.+|+.++.+++.+++.+++.+|..+.+.|+++.++.++.++.. .+.+.+.
T Consensus 144 SG-tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T 222 (526)
T COG5064 144 SG-TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT 222 (526)
T ss_pred cC-cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH
Confidence 95 44444456799999999999999999999999999999999999999999999999999999887655 7889999
Q ss_pred HHHHHhh--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHH
Q 044999 161 EILSALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTT 237 (461)
Q Consensus 161 ~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~ 237 (461)
++|.|+| .++..-...+. ..+|.|.+++.+.++++...|++++..++..+.. -..+.+.|..+.|+++|.+++..+
T Consensus 223 WtLSNlcRGknP~P~w~~is-qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNIS-QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHHHHhhCCCCCCCchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 9999999 34443333332 2589999999999999999999999999998877 778899999999999999999999
Q ss_pred HHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhccC
Q 044999 238 KLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILREG 310 (461)
Q Consensus 238 ~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~ 310 (461)
+..+++.++|+... +.....++..|+++.+..+|.++...+++.+++++.|++..... .+.+. |+|+++|.+.
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999887 55666777899999999999999889999999999999655443 33333 9999999999
Q ss_pred CHHHHHHHHHHHHHhhCC----CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch-----------hhHH
Q 044999 311 DNEANAAAADVLWDLAGY----KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE-----------ADRV 374 (461)
Q Consensus 311 ~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~-----------~~~~ 374 (461)
+-.++..||+++.|...+ |+....++..|++..|..+|.-.+..+-+.++-++.|+-. .+ .+..
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~ 461 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAV 461 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHH
Confidence 999999999999999964 6677888899999999999997766666666777766655 22 1223
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999 375 ALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERI 417 (461)
Q Consensus 375 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 417 (461)
.+-++|++..+..+-.+.+..+-..|..++.....+.+....+
T Consensus 462 ~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~l 504 (526)
T COG5064 462 YVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDEL 504 (526)
T ss_pred HHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhc
Confidence 3345899999999988899999999999888877555444333
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.97 E-value=1.6e-26 Score=224.77 Aligned_cols=388 Identities=18% Similarity=0.234 Sum_probs=327.0
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.++..+++-.++...+...+ .+...|.+++ +......+.+ +++.|+++|.+ + +......++.+|.+|+.
T Consensus 248 ~~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr----~--n~ellil~v~fLkkLSi- 319 (708)
T PF05804_consen 248 YEKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR----E--NEELLILAVTFLKKLSI- 319 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC----C--CHHHHHHHHHHHHHHcC-
Confidence 34555666666666554444 7888999999 8888888877 99999999987 3 45677779999999999
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
..+++..+.+.|+++.|.+++.+++.+.+..+.+.+.|++ .+++.|..+++.|.+|.|+.++.++ ..+..++.+|.
T Consensus 320 -~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy 395 (708)
T PF05804_consen 320 -FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILY 395 (708)
T ss_pred -CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHH
Confidence 7889999999999999999999999999999999999999 5668999999999999999999864 46778999999
Q ss_pred HhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999 165 ALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243 (461)
Q Consensus 165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 243 (461)
+++.+++.+..+...++++.+++++-+. ++.+...++..+.|++.+..+.+.+.+.++++.|++........ ....
T Consensus 396 ~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlK 472 (708)
T PF05804_consen 396 NLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLK 472 (708)
T ss_pred HhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHH
Confidence 9999999999999999999999987554 66777888999999999999998999989999999876543322 2345
Q ss_pred HHHHHhcCc-cchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhccC--CHH
Q 044999 244 TLGVVAAHV-EYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILREG--DNE 313 (461)
Q Consensus 244 ~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~--~~~ 313 (461)
.++|++.++ ..+..+. +.+..|+.++..+ +++....++++|.||+..+..-..+. |.+.++|..+ .++
T Consensus 473 lIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dD 550 (708)
T PF05804_consen 473 LIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDD 550 (708)
T ss_pred HHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChH
Confidence 999999995 5555443 4677777877665 78899999999999987665444444 8888888655 568
Q ss_pred HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhcc
Q 044999 314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALAD-AGAVPIMIELLH 390 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~ 390 (461)
+.-.++..++.++..+.+...+.+.|.++.|++++... +.+...+.+.++.++..+++.+..+.+ .+++..|+.+++
T Consensus 551 l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~ 630 (708)
T PF05804_consen 551 LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMH 630 (708)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhc
Confidence 88999999999999999999999999999999999854 688999999999999998888888865 677889999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc
Q 044999 391 DESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 391 ~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
++|++++..|-.+|--++..++
T Consensus 631 d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 631 DKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred CCCHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999998887764
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=6.8e-26 Score=220.38 Aligned_cols=372 Identities=18% Similarity=0.210 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 149 (461)
..+.+...|.|+++ +......+...|+++.|+++|.+++.++...++.++.+++. ..+++..+.+.|+++.|.+++.
T Consensus 265 Llrv~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 265 LLRVAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhc
Confidence 44558889999999 88999999999999999999999999988889999999995 4489999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 044999 150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL 229 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l 229 (461)
+.+.+++..++++|.|++.+++.|..+++.|++|.|+.++.++ ..+..++.+|.+++..++.+..+...++++.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 9999999999999999999999999999999999999999865 45667999999999999889999999999999997
Q ss_pred cc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-cHHHHH---HHH
Q 044999 230 FH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-NANAIA---EHL 303 (461)
Q Consensus 230 l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~i~---~~l 303 (461)
+- .+++.+...++..+.|++.++.+.+.+.+.|+++.|+...... ++- ....+.|++.++. .+..+. ..+
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L 495 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDL 495 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 66 4566677778889999999999989999988899998875433 332 3469999999884 444444 666
Q ss_pred HHHhccC-CHHHHHHHHHHHHHhhCCC-CchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999 304 VRILREG-DNEANAAAADVLWDLAGYK-HSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADA 379 (461)
Q Consensus 304 ~~ll~~~-~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 379 (461)
+..+..+ +++....++++|+||...+ +....+.+.+.+|.|..+|..+ .+++...++..++.++.++.+...+.+.
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s 575 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS 575 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 6666554 6889999999999999654 4445555789999999999855 4678889999999999999999999999
Q ss_pred CChHHHHHhccC--CCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 380 GAVPIMIELLHD--ESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 380 ~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
|.++.|+++++. .+.++..+.+.++..+..+++.|+.+.+..+ .+..++...+ + ....+++.+..++..|.
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~--~~~ylidL~~---d-~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETE--IPAYLIDLMH---D-KNAEIRKVCDNALDIIA 648 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccc--hHHHHHHHhc---C-CCHHHHHHHHHHHHHHH
Confidence 999999999955 5799999999999999999999988876443 4445555432 3 36778888888877653
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.89 E-value=1.2e-20 Score=179.53 Aligned_cols=357 Identities=20% Similarity=0.222 Sum_probs=286.6
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++..+.+|.+ .++.+|..|+..+.++|.. +...+..+.+.|+++.|+.++.+.+.+++.+++.++.||+...
T Consensus 234 ~lpe~i~mL~~------q~~~~qsnaaaylQHlcfg-d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMS------QDPSVQSNAAAYLQHLCFG-DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhc------cChhhhHHHHHHHHHHHhh-hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 78888999986 5677999999999999987 8889999999999999999999999999999999999999865
Q ss_pred hh--hHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-------------
Q 044999 129 NE--NRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG------------- 192 (461)
Q Consensus 129 ~~--~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~------------- 192 (461)
.. ++-.+.+.++++.++++|+. .|.++++....+|+||+.++..+..++.. .+..|..-.-.+
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence 54 89999999999999999986 68899999999999999887777666654 455554433211
Q ss_pred -CHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcc------cCCHHHHHHHHHHHHHHhcCcc------c---
Q 044999 193 -SMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFH------IGDWTTKLVAGNTLGVVAAHVE------Y--- 254 (461)
Q Consensus 193 -~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~------~--- 254 (461)
+.++-..+.++|+|++..... ++.|.+ .|.|..|+..++ ..+....+.++..|+|++..-+ .
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 246677999999999996666 888887 688999998887 3467788999999999976411 0
Q ss_pred -----------------------hhh----------------------hhhcCCHHHHHHHhC-CCChhHHHHHHHHHHH
Q 044999 255 -----------------------ITP----------------------VAEAGAIPLYAELLQ-GPDSTGKEISEDVFCI 288 (461)
Q Consensus 255 -----------------------~~~----------------------~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~ 288 (461)
+.. +....+|.....++. +.++.+.+.++.+|-|
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 000 111123334344443 3477889999999999
Q ss_pred hccCcc-c----HHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC-----
Q 044999 289 LAVSEA-N----ANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN----- 352 (461)
Q Consensus 289 l~~~~~-~----~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~----- 352 (461)
++.... . +..+. +.++++|+.+++.+...++.+|.||+.+..+++.+. .++++.|++.|....
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCc
Confidence 954332 2 33332 999999999999999999999999999999999988 589999999997543
Q ss_pred -HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcch
Q 044999 353 -DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 353 -~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
.++...++.+|.++.. +..+...+.+.++++.|+-+..+ .++...+.|...|..|=...+-+
T Consensus 625 sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred hHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999997 99999999999999999999866 56788888888888875555444
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=1.9e-20 Score=178.21 Aligned_cols=349 Identities=19% Similarity=0.201 Sum_probs=279.3
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CC--hHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LL--REVRR 174 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~--~~~~~ 174 (461)
-++..+.+|.+.++.++..++..+-.++..+.+.+..+.+.|+++.|+.++.+...+++..|+.+|.|+. .. .+++-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 3678889999999999999999999999999999999999999999999999999999999999999999 33 34788
Q ss_pred HHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc--------------CCHHHHH
Q 044999 175 VLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI--------------GDWTTKL 239 (461)
Q Consensus 175 ~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~--------------~~~~~~~ 239 (461)
.+.+.++++.++++|.. .|.++++....+|+||++++..+..+... .+..|..-.-. .+.++-.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 89999999999999987 58899999999999999996666555443 34444443221 1245667
Q ss_pred HHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCC------CChhHHHHHHHHHHHhccCcc-----------------
Q 044999 240 VAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQG------PDSTGKEISEDVFCILAVSEA----------------- 294 (461)
Q Consensus 240 ~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~----------------- 294 (461)
.+..+|+|++.. .+.|+.+.+. |.|..|+..++. .+....++|..+|.||+..-+
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 899999999986 8889999886 889999888762 266788999999999964221
Q ss_pred --------------c-HHHH---------H--------------HHHHHH----h-ccCCHHHHHHHHHHHHHhhCCC--
Q 044999 295 --------------N-ANAI---------A--------------EHLVRI----L-REGDNEANAAAADVLWDLAGYK-- 329 (461)
Q Consensus 295 --------------~-~~~i---------~--------------~~l~~l----l-~~~~~~~~~~a~~~L~~l~~~~-- 329 (461)
. .... . +.+++. + .+.++.+.+.++++|-|++...
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 0 0010 0 444432 3 4567889999999999999541
Q ss_pred ---CchhHH-hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCC------CHHHHHH
Q 044999 330 ---HSVPVI-RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDE------SEELRDN 399 (461)
Q Consensus 330 ---~~~~~l-~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~ 399 (461)
..+..+ .+..+++.|++++..+++.+...++.+|.||+.++.++..+. .++++.|++.+.+. +.++...
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 223333 688899999999999999999999999999999999998888 56799999999553 3688899
Q ss_pred HHHHHHHhc-CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhh
Q 044999 400 AAESLINFS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQ 454 (461)
Q Consensus 400 a~~~L~~l~-~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 454 (461)
++.+|.|+. .+..+.+.+.+.+|++.+..+... .+++.+-++|.+.+..
T Consensus 632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s------~~S~k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS------QHSPKEFKAASSVLDV 681 (717)
T ss_pred HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc------cCCHHHHHHHHHHHHH
Confidence 999999997 777899999999999999887774 3455555555554443
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=5e-20 Score=182.89 Aligned_cols=339 Identities=18% Similarity=0.201 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCC---HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH--
Q 044999 71 QQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSD---DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI-- 145 (461)
Q Consensus 71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~-- 145 (461)
+...+..+..++. +.+.+..++..|.++.|+++|...+ .+.++.+-.+|.++....++.+..-.+..++..|-
T Consensus 211 ~ee~ar~fLemSs--s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI 288 (2195)
T KOG2122|consen 211 EEEMARTFLEMSS--SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI 288 (2195)
T ss_pred HHHHHHHHHHhcc--CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence 5555578888888 7888889999999999999997543 46688888899999986666554444443333332
Q ss_pred -HH-------hcCCCh-------HHH-HHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC------------CHHHH
Q 044999 146 -DL-------LNSCND-------GTR-RYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG------------SMVSR 197 (461)
Q Consensus 146 -~l-------l~~~~~-------~~~-~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~------------~~~~~ 197 (461)
.. +...++ .-+ ..|+.+|.+++.+++.|..+.+.|+++.+-+++.-+ ...+|
T Consensus 289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 21 111111 223 378889999999999999999999999998877521 23689
Q ss_pred HHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-c-cchhhhhhcCCHHHHHHH-hC
Q 044999 198 ERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-V-EYITPVAEAGAIPLYAEL-LQ 272 (461)
Q Consensus 198 ~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~i~~L~~l-l~ 272 (461)
.++..+|.||++.+.. +..+.. .|++..++..|.+...++....+.+|+||++. + ..+..+-+.|-+..|... ++
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999887 655554 78999999999999999999999999999998 3 455566667989888887 45
Q ss_pred CCChhHHHHHHHHHHHhcc-CcccHHHHH------HHHHHHhccC----CHHHHHHHHHHHHHhhC----CCCchhHHhh
Q 044999 273 GPDSTGKEISEDVFCILAV-SEANANAIA------EHLVRILREG----DNEANAAAADVLWDLAG----YKHSVPVIRN 337 (461)
Q Consensus 273 ~~~~~~~~~a~~~L~~l~~-~~~~~~~i~------~~l~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~l~~ 337 (461)
.......+..+.+|+||+. ..+++..|. ..|+.+|... .-.+.+.+.++|.|++. ++..++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 5566778889999999964 456777776 7888888655 35688999999999985 4778889999
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 338 SGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 338 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
++.+..|++.|++.+-.+..++|.+||||+. +++.++.+++.|.++.|..++++++..+-+.++.+|.||....
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999997665
No 14
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-17 Score=147.26 Aligned_cols=422 Identities=12% Similarity=0.073 Sum_probs=308.1
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
..-+.+...+...+..++..+..++...+ ++..|..+.+ ++..+++.|+. .|.++|..+-..+.++|.|+|.+ +
T Consensus 42 t~ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq--~psS~d~ev~~Q~~RaLgNiCyd-n 118 (604)
T KOG4500|consen 42 TSEKIQASGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQ--TPSSPDTEVHEQCFRALGNICYD-N 118 (604)
T ss_pred hHHHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHh--CCCCCcccHHHHHHHHHhhhhcc-C
Confidence 33344455555667788899999999999 8888888877 44667777775 34445555667799999999998 8
Q ss_pred chhHHHHHhcCCHHHHHhcCC----CCCH---HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--CCChHHHH
Q 044999 87 GALATEIGQSGVINSVLRLFP----QSDD---SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN--SCNDGTRR 157 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~----~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~ 157 (461)
.+++..+.+.||-+.+++.|+ ..+| .....+...+.|...++.+.+....+.|+++.|...+. .++....+
T Consensus 119 ~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e 198 (604)
T KOG4500|consen 119 NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTE 198 (604)
T ss_pred chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHH
Confidence 889999999999666666655 3333 33445555666888889899999999999999999765 34555556
Q ss_pred HHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc-C
Q 044999 158 YLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI-G 233 (461)
Q Consensus 158 ~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~ 233 (461)
..+....++.. .+.......+......+++++... +++.++.....+...+.++..+-.+.+.|.+..++++++. .
T Consensus 199 ~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k 278 (604)
T KOG4500|consen 199 KLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMK 278 (604)
T ss_pred HHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcc
Confidence 66655555552 222344555667777788888765 7789999999999999999989999999999999999885 2
Q ss_pred CHH-------HHHHHHHHHHHHhcCccchhhhhhcC-CHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----
Q 044999 234 DWT-------TKLVAGNTLGVVAAHVEYITPVAEAG-AIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----- 300 (461)
Q Consensus 234 ~~~-------~~~~a~~~L~~l~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----- 300 (461)
+.. ....++....-+...++....+...+ ++..+.+++.+.+......+.-+++|++..++.+..++
T Consensus 279 ~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~ 358 (604)
T KOG4500|consen 279 DFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFL 358 (604)
T ss_pred cccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 221 22234444444444456666666665 88999999999999999999999999999999988887
Q ss_pred HHHHHHhcc-----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh-hHH
Q 044999 301 EHLVRILRE-----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA-DRV 374 (461)
Q Consensus 301 ~~l~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~ 374 (461)
+.++.++.. ++-+++.+++.+|+|+.....++..+...|..+.+...++...|.++..-..+++.+-...+ ...
T Consensus 359 nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~ 438 (604)
T KOG4500|consen 359 NKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIAC 438 (604)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHH
Confidence 666666632 35678889999999999998999999999999999999999989999888888877765322 333
Q ss_pred HHHhC-CChHHHHHhccCCC-HHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHH
Q 044999 375 ALADA-GAVPIMIELLHDES-EELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLT 434 (461)
Q Consensus 375 ~~~~~-~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~ 434 (461)
.+.++ ..+..|+..-++++ ..+.....+.+..+..++.....+...-..|.+..++..++
T Consensus 439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t 500 (604)
T KOG4500|consen 439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFT 500 (604)
T ss_pred HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHH
Confidence 33332 33566666665543 45778888888888877655444443333344555555443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.84 E-value=1.2e-16 Score=154.60 Aligned_cols=389 Identities=17% Similarity=0.157 Sum_probs=300.1
Q ss_pred HHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh
Q 044999 52 ILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN 131 (461)
Q Consensus 52 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~ 131 (461)
.+...|+. . +.+....++.+|..+.. ....... ..+..+.|.+.|.++++.++..++..+.+++.++...
T Consensus 42 ~lf~~L~~----~--~~e~v~~~~~iL~~~l~--~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~ 111 (503)
T PF10508_consen 42 VLFDCLNT----S--NREQVELICDILKRLLS--ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGA 111 (503)
T ss_pred HHHHHHhh----c--ChHHHHHHHHHHHHHHh--ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 37777875 3 23344447788888887 3333222 5567789999999999999999999999998877666
Q ss_pred HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Q 044999 132 RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 132 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 211 (461)
...+.+.+.++.++..+.+++..+...|..+|.+++.++.....+++.+.+..|..++...++.+|..++.++.+++...
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 77888899999999999999999999999999999988888888889889999999998888899999999999999888
Q ss_pred hh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--Ch---h-HHHHHHH
Q 044999 212 RA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DS---T-GKEISED 284 (461)
Q Consensus 212 ~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~---~-~~~~a~~ 284 (461)
+. ...+.+.|+++.++..+.++|.-++..++..|..++..+.+...+.+.|+++.|..++.+. ++ . .......
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 77 7888889999999999999999999999999999999999999999999999999999755 33 1 1222335
Q ss_pred HHHHhccC-cccHHH----HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH-hhcC-C----HHHHHHhhcCCCH
Q 044999 285 VFCILAVS-EANANA----IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI-RNSG-A----IPILVNLLRGEND 353 (461)
Q Consensus 285 ~L~~l~~~-~~~~~~----i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l-~~~g-~----i~~L~~ll~~~~~ 353 (461)
..++++.. +..... +...+.+++.+.++..+..|..+++.++...+++..+ ...| . +...-....++..
T Consensus 272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 66777664 222111 1166667778899999999999999999998888888 4433 3 4444555567788
Q ss_pred HHHHHHHHHHHHhcC--Chhh--------HHHHH--hCCChH-HHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHh
Q 044999 354 EVREKVSGAIAQLSY--NEAD--------RVALA--DAGAVP-IMIELLHDESEELRDNAAESLINFSEDPLQHERISEA 420 (461)
Q Consensus 354 ~v~~~a~~~L~~l~~--~~~~--------~~~~~--~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 420 (461)
+++..++.++.++-. .+.. +..+. ..+... .+..+++.+-|++|..+...|..++..+-+.+.+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~- 430 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICS- 430 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHh-
Confidence 999999999999944 2211 11111 223344 677788888899999999999999999887767654
Q ss_pred hCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 421 IGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 421 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
.-|.+..++++-. + .+...++..-..++.+.
T Consensus 431 -~~gfie~lldr~~---E-~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 431 -SPGFIEYLLDRST---E-TTKEGKEAKYDIIKALA 461 (503)
T ss_pred -CccHHhhhcCCCC---C-CCHHHHHHHHHHHHHHH
Confidence 4445565665332 1 24456666555555554
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.8e-17 Score=138.95 Aligned_cols=338 Identities=15% Similarity=0.190 Sum_probs=269.4
Q ss_pred HHHHHHHHHhcCC--chhHHHHHhcCCHHHHHh---cCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999 74 AAYCLKQIASQAD--GALATEIGQSGVINSVLR---LFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL 148 (461)
Q Consensus 74 a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~---ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll 148 (461)
....|.+++..-. ...+..-...|..+.++. +-.+++..+...+..++..+... +..+.+..++..++++|
T Consensus 79 ~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~----qpdl~da~g~~vvv~lL 154 (461)
T KOG4199|consen 79 TTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHK----QPDLFDAEAMAVVLKLL 154 (461)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC----CcchhccccHHHHHHHH
Confidence 3455555553201 222222334455555543 33466777777777777777743 46678888999999988
Q ss_pred cC--CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh----------H
Q 044999 149 NS--CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA----------R 214 (461)
Q Consensus 149 ~~--~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~----------~ 214 (461)
.. .+.++....+..+..-| .++.+|+.+++.++++.+...+... ...+.+.++++++-+...++. .
T Consensus 155 ~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hA 234 (461)
T KOG4199|consen 155 ALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHA 234 (461)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHH
Confidence 54 45678888888888888 8899999999999999999888665 336788889999988776643 3
Q ss_pred HHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-Chh---HHHHHHHHHHHh
Q 044999 215 RLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DST---GKEISEDVFCIL 289 (461)
Q Consensus 215 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~---~~~~a~~~L~~l 289 (461)
+.+...|++..|++.++ .-+|.+....+.+|..|+..++.+..+.+.|++..+++++.+. +.. ..+.++..|..+
T Consensus 235 r~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 235 RTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 55777888999999998 4468888999999999999999999999999999999999875 333 456788888899
Q ss_pred ccCcccHHHHH-----HHHHHHhc--cCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCC--CHHHHHHH
Q 044999 290 AVSEANANAIA-----EHLVRILR--EGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGE--NDEVREKV 359 (461)
Q Consensus 290 ~~~~~~~~~i~-----~~l~~ll~--~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a 359 (461)
+.+++.+..++ +.++.++. +++|.+.+.++.++.-++ +.|++...+++.|+-...++.++.. ...+++++
T Consensus 315 AG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrna 394 (461)
T KOG4199|consen 315 AGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNA 394 (461)
T ss_pred hCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999998 77777763 558999999999999999 7899999999999999999999854 35699999
Q ss_pred HHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999 360 SGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416 (461)
Q Consensus 360 ~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 416 (461)
++.++|+.. +.+++..+...| ++.|+...+..++.+...+..+|..|..+-..++.
T Consensus 395 c~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 395 CNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 999999999 778777777765 99999999999999999999999999887766643
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.82 E-value=6.7e-16 Score=149.48 Aligned_cols=389 Identities=15% Similarity=0.167 Sum_probs=293.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHH
Q 044999 15 FEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEI 93 (461)
Q Consensus 15 l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 93 (461)
++..+++.+.+....++.+|..+- .......+.+..+.+...|.+ +++.++..++..+.++... +......+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h------~~~~Vr~l~l~~l~~~~~~-~~~~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH------PSPKVRRLALKQLGRIARH-SEGAAQLL 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC-CHHHHHHh
Confidence 566777777777788888888888 555555555588889999987 5567888899999999985 55567777
Q ss_pred HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHH
Q 044999 94 GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREV 172 (461)
Q Consensus 94 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~ 172 (461)
.+.+.++.++.++.+++..+...++..+..++... .....+...+....|..++..++..+|..++.++.+++ .+++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 88999999999999999999999999999999755 55566778888999999999888899999999999999 77888
Q ss_pred HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CH---HH-HHHHHHHHH
Q 044999 173 RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DW---TT-KLVAGNTLG 246 (461)
Q Consensus 173 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~---~~-~~~a~~~L~ 246 (461)
...+.+.|.++.++..+.++|.-++..++.++..++..+.....+.+.|+++.|..++.+. ++ .+ .-......+
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 8888899999999999999888999999999999999888899999999999999999843 22 11 123345667
Q ss_pred HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHH-H----------HHHHHHhccCCHHHH
Q 044999 247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAI-A----------EHLVRILREGDNEAN 315 (461)
Q Consensus 247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~----------~~l~~ll~~~~~~~~ 315 (461)
+++...+..-.-.-..++..+.+++.+.++..+..|..+++.++...+.+..+ . ..+.....++..+++
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk 354 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK 354 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence 77764111111111244566777788889999999999999999988888877 3 333334456678999
Q ss_pred HHHHHHHHHhhCCCC--c-------hhHHh---hcCCHH-HHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC-CC
Q 044999 316 AAAADVLWDLAGYKH--S-------VPVIR---NSGAIP-ILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA-GA 381 (461)
Q Consensus 316 ~~a~~~L~~l~~~~~--~-------~~~l~---~~g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~ 381 (461)
..++.++.++-..+. . .+.+. ..+... .++.+++.+=+++|..+...|..++..+-....+... |.
T Consensus 355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGF 434 (503)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccH
Confidence 999999999953321 1 11111 223344 6777887776999999999999999977666666654 44
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 382 VPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 382 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
++.|+.--.+.+.+.++.=-.++..|...+
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 555554444445554444333444444333
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-17 Score=146.81 Aligned_cols=367 Identities=15% Similarity=0.103 Sum_probs=286.3
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHH----hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH
Q 044999 70 IQQAAAYCLKQIASQADGALATEIG----QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI 145 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~ 145 (461)
+......++...+. ++..+..+. ..+.++.|.+..++++.++..++.+++.|++..+.++|..+.+.||-..++
T Consensus 58 v~~~qssC~A~~sk--~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi 135 (604)
T KOG4500|consen 58 VYLFQSSCLADRSK--NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI 135 (604)
T ss_pred hhhhhHHHHHHHhh--hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence 44456677887776 555444443 456788889999999999999999999999999999999999999988888
Q ss_pred HHhcCC----C---hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCchh--
Q 044999 146 DLLNSC----N---DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVS--FGSMVSRERACQAIGLLAVTGRA-- 213 (461)
Q Consensus 146 ~ll~~~----~---~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~-- 213 (461)
+.|+.. + ...-..++..|.|.. .+++.+.++.+.|++++|...+. ..+....+..+....|+.+.-..
T Consensus 136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~ 215 (604)
T KOG4500|consen 136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML 215 (604)
T ss_pred hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence 877642 2 256677788999988 78888999999999999988775 34777778877777777654433
Q ss_pred HHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-CC-------hhHHHHHHH
Q 044999 214 RRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-PD-------STGKEISED 284 (461)
Q Consensus 214 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-~~-------~~~~~~a~~ 284 (461)
.....++.....+++++.+ -.++..+.....+...+.++..+-.+++.|.+..++++++. .+ ......++.
T Consensus 216 ~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~e 295 (604)
T KOG4500|consen 216 YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAE 295 (604)
T ss_pred hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhh
Confidence 5555666777778888874 46778888899999999999999999999999999998865 21 112333444
Q ss_pred HHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-----CCH
Q 044999 285 VFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-----END 353 (461)
Q Consensus 285 ~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-----~~~ 353 (461)
...-+...+++-..+. +.+..++++++...+..+.-+++|+++.++++-.+++.|++..|+..+.. ++.
T Consensus 296 l~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 296 LDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred HhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4444445555433333 77888899999999999999999999999999999999999999999853 566
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHH
Q 044999 354 EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRL 433 (461)
Q Consensus 354 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l 433 (461)
+++..++.+|+|+.....++..+..+|..+.++..++...|.++..-.+.+..+....+. ...+.+.. ..+..++
T Consensus 376 ~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~--~a~eL~kn---~~l~ekL 450 (604)
T KOG4500|consen 376 ERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY--IACELAKN---PELFEKL 450 (604)
T ss_pred hhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH--HHHHHhcC---HHHHHHH
Confidence 788899999999999888999999999999999999999999999888888877655431 22333333 3456777
Q ss_pred HHhhhchhHH
Q 044999 434 TRIRASDDLM 443 (461)
Q Consensus 434 ~~~~~~~~~~ 443 (461)
.+|+.+.|+.
T Consensus 451 v~Wsks~D~a 460 (604)
T KOG4500|consen 451 VDWSKSPDFA 460 (604)
T ss_pred HHhhhCCccc
Confidence 8888875544
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.81 E-value=6.2e-18 Score=168.29 Aligned_cols=338 Identities=16% Similarity=0.195 Sum_probs=263.1
Q ss_pred HHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch--hHHHHHhcCCHHHHH
Q 044999 29 KALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA--LATEIGQSGVINSVL 103 (461)
Q Consensus 29 ~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~l~~L~ 103 (461)
.-.+-|..++ +++....++. +++.|+++|.. +++++.+..+.|-.+|.++....+++ .+..+.-...+..+.
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~---~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHG---PDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhC---CchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4556677777 8888888887 99999999985 24435566677999999999863332 333332223333333
Q ss_pred hcC-------CCCC------HH-HHH-HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC------------ChHHH
Q 044999 104 RLF-------PQSD------DS-FRT-VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC------------NDGTR 156 (461)
Q Consensus 104 ~ll-------~~~~------~~-~~~-~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------------~~~~~ 156 (461)
.++ .... +. -+. .|...|.+++ .+++.|..+.+.|++..+-+|+.-. ...+|
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 222 2111 11 133 3444444666 6779999999999999999977421 23799
Q ss_pred HHHHHHHHHhh-CChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHh-cc
Q 044999 157 RYLLEILSALA-LLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVEL-FH 231 (461)
Q Consensus 157 ~~a~~~L~~l~-~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~l-l~ 231 (461)
.+|..+|.||. .+..++..+.. .|+++.+|..|.+..+++..-.+.+|+||+...+. ++.+.+.|-+..|... ++
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999 56666777764 68999999999999999999999999999998886 7778888988888874 44
Q ss_pred cCCHHHHHHHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCCC----ChhHHHHHHHHHHHhcc----CcccHHHHH-
Q 044999 232 IGDWTTKLVAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQGP----DSTGKEISEDVFCILAV----SEANANAIA- 300 (461)
Q Consensus 232 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~----~~~~~~~i~- 300 (461)
..........+.+||||+.+ .+|+..|... |++..|+.+|... .-.+.+.+-++|.|.+. .++.++.+.
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 55667888899999999999 8888888765 8999999999765 35688899999999854 344444443
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCh
Q 044999 301 ----EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNE 370 (461)
Q Consensus 301 ----~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 370 (461)
..|++.|++.+-.+.-++|++||||+ .+++.++.+.+.|.++.|..++++++..+-..++.+|.||....
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 78888889999999999999999999 67899999999999999999999999999999999999998844
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.4e-16 Score=134.31 Aligned_cols=313 Identities=16% Similarity=0.168 Sum_probs=253.8
Q ss_pred HhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 044999 18 AVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSG 97 (461)
Q Consensus 18 ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 97 (461)
+-++++..+-.++..+|..+.+.+++-.=.+++..++.+|.. ..++.++.......+..-|.. ++.++..+.+.+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~----~~~~~dlt~~~~~~v~~Ac~~-hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLAL----KVESEEVTLLTLQWLQKACIM-HEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHH-hHHHHHHHHHhh
Confidence 455677788888888888888554442223388888899886 555566777788888888886 889999999999
Q ss_pred CHHHHHhcCCC-CCHHHHHHHHHHHHHHhccC---------hhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHh
Q 044999 98 VINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFG---------NENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSAL 166 (461)
Q Consensus 98 ~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~---------~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l 166 (461)
.++.+.+.+.. +...+.+...++++-+..++ ....+.|...|++..|++.+... +|++...++.+|..+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 99999976664 44456777777888666543 12356777888999999988754 688999999999999
Q ss_pred hCChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHH
Q 044999 167 ALLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLV 240 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~ 240 (461)
+...+..+.+.+.||+..+++++.+.+. +....++..|+.++.++..+..+++.|+.+.++.++. +.+|.+.+.
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~ 349 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE 349 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence 9999999999999999999999988533 3557889999999999999999999999999999886 668889999
Q ss_pred HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHhcc-CcccHHHHH----HHHHHHhccCCH
Q 044999 241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCILAV-SEANANAIA----EHLVRILREGDN 312 (461)
Q Consensus 241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~-~~~~~~~i~----~~l~~ll~~~~~ 312 (461)
++.++.-|+.- ++....+++.|+-...++.++.. ...++++++..+.|++. ..+++..+. +.|+..-+..++
T Consensus 350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCc
Confidence 99999999877 88899999999999999998765 46799999999999954 444555554 899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHH
Q 044999 313 EANAAAADVLWDLAGYKHSVPVI 335 (461)
Q Consensus 313 ~~~~~a~~~L~~l~~~~~~~~~l 335 (461)
.+...|-.+|+.|-.+..+++..
T Consensus 430 tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred cHHHHHHHHHHhcCcchhhHHHh
Confidence 99999999999998765555543
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.8e-15 Score=133.77 Aligned_cols=347 Identities=17% Similarity=0.202 Sum_probs=280.0
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 149 (461)
..+.|...|.++++ +-..-..++..+.+..|++.|...+.+........+..++-.+ +++..+.+.|.+..|.++..
T Consensus 279 LLrva~ylLlNlAe--d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE--DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHhh--hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcC
Confidence 33448999999999 7777788899999999999999999887777888888888555 88999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 044999 150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVEL 229 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~l 229 (461)
..+++++...+..+.|++.+...+..++..|.+|.+..++.+++ -...|+..+..++.+++.+..+....+++.+.+.
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764 2456888899999998889999999999999986
Q ss_pred cccC-CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHH-HHH---HHH
Q 044999 230 FHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANAN-AIA---EHL 303 (461)
Q Consensus 230 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~-~i~---~~l 303 (461)
+-+. +.++-......-.|++.+..+.+.+.+..++..|.+. +++.++-+ ...+.|+++++..-+ .+. ..|
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~FidyvgdL 509 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDYVGDL 509 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHHHHHH
Confidence 6543 4444444444456888888888888887778887775 45555543 357889999888544 444 666
Q ss_pred HHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999 304 VRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADA 379 (461)
Q Consensus 304 ~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 379 (461)
...++.. +++....++++++||... -+-...+.+...+|.+...|..+ ..+++.....+++.++.+..+...+..+
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 7777655 566778899999999854 45556666788999999999865 3557778888899999999989999999
Q ss_pred CChHHHHHhccC--CCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCch
Q 044999 380 GAVPIMIELLHD--ESEELRDNAAESLINFSEDPLQHERISEAIGIPS 425 (461)
Q Consensus 380 ~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 425 (461)
+.++.++++++. .+.+.......+...+..+...+..+.+....|.
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~A 637 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGA 637 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 999999999965 5777888888888888888767777766555554
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.1e-15 Score=133.61 Aligned_cols=373 Identities=17% Similarity=0.159 Sum_probs=293.9
Q ss_pred CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCH
Q 044999 23 SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVI 99 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l 99 (461)
.+.+-+.|...|.++| +-.....+++ ++..|++.|.. ++ .+.......+|..|+- ..+++..+.+.|.+
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr----~n--~~Ll~lv~~FLkKLSI--f~eNK~~M~~~~iv 347 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR----SN--SSLLTLVIKFLKKLSI--FDENKIVMEQNGIV 347 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc----cc--hHHHHHHHHHHHHhhh--hccchHHHHhccHH
Confidence 4455566888899999 6666667776 99999999987 33 4466668899999998 78889999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL 179 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 179 (461)
++|+++.....++.+......+.+++.+. ..+..++..|.+|.+..++.+.. -...|+..+..++-+++.+..+...
T Consensus 348 eKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayT 424 (791)
T KOG1222|consen 348 EKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYT 424 (791)
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHH
Confidence 99999999999999999999999999655 88999999999999999998765 3456889999999999999999999
Q ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcCcc-chh
Q 044999 180 GGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAHVE-YIT 256 (461)
Q Consensus 180 ~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~-~~~ 256 (461)
.+++.+.+.+-+. +.++-...+....|++.+..+.+.+++-.++..|++.. ++.++-. ...++|++.++. .+.
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQN 500 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHH
Confidence 9999988766444 55666666666679999988888888877888887744 4444432 347899999854 555
Q ss_pred hhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhccC--CHHHHHHHHHHHHHhhC
Q 044999 257 PVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILREG--DNEANAAAADVLWDLAG 327 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~--~~~~~~~a~~~L~~l~~ 327 (461)
.+++. +..|...++.. +.+....++++|+||...+-.-..+. |.+-..|..+ ..+.+-..+-.++.++.
T Consensus 501 ~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~ 578 (791)
T KOG1222|consen 501 MFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR 578 (791)
T ss_pred HHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence 55432 44566666544 56677789999999988766655555 6666666544 35667777778888888
Q ss_pred CCCchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHhCC-ChHHHHHhccCCCHHHHHHHHHHH
Q 044999 328 YKHSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSYNEADRVALADAG-AVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 328 ~~~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
...+...+...|.++.|+++|+. .+++...+.+.+...+..++..+..+.+.. .-.-|+.++++.+.++|..+-.+|
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~L 658 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNAL 658 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence 88899999999999999999985 467788888888888888777777777554 456689999999999999999999
Q ss_pred HHhcCCCc
Q 044999 405 INFSEDPL 412 (461)
Q Consensus 405 ~~l~~~~~ 412 (461)
--++.+++
T Consensus 659 dIiae~d~ 666 (791)
T KOG1222|consen 659 DIIAEHDK 666 (791)
T ss_pred HHHHHhhH
Confidence 98887764
No 23
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.67 E-value=9.8e-15 Score=126.66 Aligned_cols=192 Identities=22% Similarity=0.233 Sum_probs=169.9
Q ss_pred HHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999 217 LVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
+.+.+-++.|+.+|+ +.++.+++.+..++++.+..+.++..+.+.|+++.+..++.++++.++..|+.+|.|++.+.++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 355667899999999 5689999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH---HHHHHHhccC--CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCh
Q 044999 296 ANAIA---EHLVRILREG--DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNE 370 (461)
Q Consensus 296 ~~~i~---~~l~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 370 (461)
+..+- +.+.+...+. +..++..++++|.+|+..++.+..+.. .++.++.++.+++..++..++++|.||+.++
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 87766 5555544333 678999999999999988777777654 7999999999999999999999999999999
Q ss_pred hhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCC
Q 044999 371 ADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSED 410 (461)
Q Consensus 371 ~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 410 (461)
.....+..+++++.++.+++. .+.++...+...+.|+..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999966 5788999999999999544
No 24
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=2.7e-14 Score=127.05 Aligned_cols=254 Identities=18% Similarity=0.171 Sum_probs=200.7
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI 177 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 177 (461)
.++.|...|.+.+..++..++..|..+-.. ..++.+..++.+.++.+|..|+.+|..+......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 478899999999999999999998866532 2567788889999999999999999998743221
Q ss_pred hcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchh
Q 044999 178 CLGGLRYLVEA-VSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT 256 (461)
Q Consensus 178 ~~~~l~~l~~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 256 (461)
....++.|..+ ++++++.+|..++.+|+++....... ...++..+...+.++++.++..++.+|+.+..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 11246667766 57779999999999999986544321 11245667778888899999999999976532
Q ss_pred hhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999 257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR 336 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 336 (461)
...++.|+.+++++++.++..|+.+|..+... .....+.|+..+.+.++.++..|+.+|+.+-.
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------- 221 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------- 221 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------
Confidence 23589999999999999999999999999322 22455889999999999999999999998632
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHH
Q 044999 337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEELRDNAAESLIN 406 (461)
Q Consensus 337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~ 406 (461)
..+++.|++.+.+++ ++..++.+|+.+... ..+|.|.+++. ++++.++..+.++|..
T Consensus 222 -~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 -KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 368899999999866 677888888888753 24899999995 7899999999988753
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=7.8e-14 Score=121.08 Aligned_cols=191 Identities=18% Similarity=0.143 Sum_probs=166.0
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.|+.+|+. ++||.+|..+..++.+.+. ...+++.+.+.|+++.+.++++++++.++..+..++.+++. +
T Consensus 13 ~l~~Ll~lL~~-----t~dp~i~e~al~al~n~aa--f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~ 84 (254)
T PF04826_consen 13 ELQKLLCLLES-----TEDPFIQEKALIALGNSAA--FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-N 84 (254)
T ss_pred HHHHHHHHHhc-----CCChHHHHHHHHHHHhhcc--ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-C
Confidence 78999999994 4679999999999999988 78999999999999999999999999999999999999984 5
Q ss_pred hhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999 129 NENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 206 (461)
.+++..+.. .++.+++...+ .+..++..+++.|.+++...+.+..+.. .++.++.+|.+++..++..++++|.|
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 577777654 47777774433 3668999999999999977777666644 69999999999999999999999999
Q ss_pred hhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcC
Q 044999 207 LAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 207 l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 251 (461)
|+.++...+.+...++...++.++..+ +.++...++..+.|+..+
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999988888888999999999965 678899999999999876
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=4.3e-13 Score=139.38 Aligned_cols=274 Identities=19% Similarity=0.179 Sum_probs=219.8
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.|+..|.. +|+.+++.|+..|..+.. .+.++.|++.|+++++.|+..++..+..+....
T Consensus 622 ~~~~L~~~L~D------~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~ 683 (897)
T PRK13800 622 SVAELAPYLAD------PDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL 683 (897)
T ss_pred hHHHHHHHhcC------CCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 67888889975 678899989888887753 235688999999999999999999988775321
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
+ ..+.+...|+++++.+|..|+..|..+.. +-...++..|.++++.+|..|+.+|+.+.
T Consensus 684 ~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 684 P----------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred C----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 1 13567788899999999999999987642 22345778899999999999999999762
Q ss_pred cCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999 209 VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288 (461)
Q Consensus 209 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 288 (461)
..+.|...+.++++.++..++.+|..+... ....++.|..+++++++.+|..++.+|.+
T Consensus 743 -------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~ 801 (897)
T PRK13800 743 -------------DVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAE 801 (897)
T ss_pred -------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 234577889999999999999999988653 11236889999999999999999999999
Q ss_pred hccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 289 l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+...+ ...+.+...+.+.++.+|..|+.+|..+.. ...++.|+.++.+++..||..|+.+|..+..
T Consensus 802 ~g~~~----~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 802 LGCPP----DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG 867 (897)
T ss_pred cCCcc----hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC
Confidence 85432 222457788899999999999999988742 3456899999999999999999999999743
Q ss_pred ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999 369 NEADRVALADAGAVPIMIELLHDESEELRDNAAESLI 405 (461)
Q Consensus 369 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 405 (461)
++. ..+.|...+++.++.|+..|..+|.
T Consensus 868 ~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 DPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 443 3677888899999999999999885
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.62 E-value=1.7e-12 Score=129.12 Aligned_cols=359 Identities=21% Similarity=0.195 Sum_probs=243.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
..+.+.+-+.++++.+|..|.+.++++.++ .+.+ .++.+.+++.+ +++.+++.|+.++.++... +++.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~------~~~~VRk~A~~~l~~i~~~-~p~~ 148 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSD------PSPYVRKKAALALLKIYRK-DPDL 148 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHHHHH-CHCC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcC------CchHHHHHHHHHHHHHhcc-CHHH
Confidence 456777788889999999999999988822 2334 77888888876 4577888899999999875 3221
Q ss_pred HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-
Q 044999 90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL- 168 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~- 168 (461)
+... .++.+.+++.+.++.++..++.++..+ ..++..... .-...+..|.+++...++..+...++.+..++.
T Consensus 149 ---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 149 ---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp ---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred ---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 1122 578899999999999888888888877 222222111 111235556666688889999999999998884
Q ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH
Q 044999 169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV 248 (461)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 248 (461)
.+..... ...++.+..++++.++.+...+..++..+...... -..+++.|..++.++++.++..++..|..+
T Consensus 223 ~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~-----~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 223 EPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPEL-----LQKAINPLIKLLSSSDPNVRYIALDSLSQL 294 (526)
T ss_dssp SHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHH-----HHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred ChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHH-----HHhhHHHHHHHhhcccchhehhHHHHHHHh
Confidence 3333322 34577788888888889999999999988776652 233678899999988999999999999998
Q ss_pred hcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhh
Q 044999 249 AAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANAIAEHLVRILR-EGDNEANAAAADVLWDLA 326 (461)
Q Consensus 249 ~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~-~~~~~~~~~a~~~L~~l~ 326 (461)
+... ...+ . . ....+..+. +++..++..++..|..++. +.+...+.+.+.+.++ ..+++.+..++..++.++
T Consensus 295 ~~~~--~~~v-~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 295 AQSN--PPAV-F-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp CCHC--HHHH-G-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hccc--chhh-h-h-hhhhhheecCCCChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 8753 2222 2 2 222333444 7788999999999998875 3445556678888884 447889999999998888
Q ss_pred C-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHH
Q 044999 327 G-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAES 403 (461)
Q Consensus 327 ~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~ 403 (461)
. .+...... ++.+++++....+.+...+...+.++.. +++.+... +..|.+.+.+ .+++++..++|+
T Consensus 369 ~~~~~~~~~~-----v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wi 438 (526)
T PF01602_consen 369 EKFPPDAEWY-----VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPEALAAAIWI 438 (526)
T ss_dssp HHHGSSHHHH-----HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHH
T ss_pred hccCchHHHH-----HHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhh
Confidence 3 33333332 3457777776666666666666666665 55544443 5556666643 566677777777
Q ss_pred HHHhcCC
Q 044999 404 LINFSED 410 (461)
Q Consensus 404 L~~l~~~ 410 (461)
+...+..
T Consensus 439 lGEy~~~ 445 (526)
T PF01602_consen 439 LGEYGEL 445 (526)
T ss_dssp HHHHCHH
T ss_pred hcccCCc
Confidence 7766543
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-11 Score=123.46 Aligned_cols=389 Identities=16% Similarity=0.189 Sum_probs=255.6
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS 83 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~ 83 (461)
+|.+.++.+++..+|+++..|..|...|+.+. .......+....+.+.+.+.. . +++ +...|++++..++.
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d----~-s~~-vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD----P-SSP-VRVAAVRALGAFAE 188 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC----C-cch-HHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999 333333445577777888875 3 334 66669999999987
Q ss_pred cCC--chhHHHHHh--cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--ChHHHH
Q 044999 84 QAD--GALATEIGQ--SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--NDGTRR 157 (461)
Q Consensus 84 ~~~--~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~ 157 (461)
..+ ......+.. .+.+..+-+.+..++.+....+..++..++...+..-.-... .++...+++.++. ++.+|.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence 521 222222221 233444445566777777778888888888655443222221 2455556666554 568999
Q ss_pred HHHHHHHHhhCChHHHHHHHh---cCCHHHHHHHHcCC--C--------------HHHHHHHHHHHHHhhcCchhHHHHH
Q 044999 158 YLLEILSALALLREVRRVLIC---LGGLRYLVEAVSFG--S--------------MVSRERACQAIGLLAVTGRARRLLV 218 (461)
Q Consensus 158 ~a~~~L~~l~~~~~~~~~~~~---~~~l~~l~~~l~~~--~--------------~~~~~~a~~~L~~l~~~~~~~~~~~ 218 (461)
.|+.+|..+++......+... ...++.++..+... + ..-...|..++-.++.+=+.+..+.
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 999999999965333222211 12445555544322 1 1134566777777766555433322
Q ss_pred hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--
Q 044999 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA-- 294 (461)
Q Consensus 219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-- 294 (461)
-.++.+-.++++.++.-|..++.+|+.++.. ..+.+.. ..+++..+..+++++|.||..|+.+++.++.+-.
T Consensus 348 --~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG--c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 348 --PLFEALEAMLQSTEWKERHAALLALSVIAEG--CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 2467777788899999999999999998865 2222222 2567888888999999999999999999976432
Q ss_pred cHH----HHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHH-HHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 295 NAN----AIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIP-ILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 295 ~~~----~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
..+ .+.+.|+..+.+. ++.++.+|+.++.|++.. +...-.-.-.+.++ .+..++.++++.+++.++.+|+..+
T Consensus 424 iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 222 2227788888655 789999999999999853 32222222334555 5555667889999999999999999
Q ss_pred CChhhHHHHHh--CCChHHHHHhccCCC-H---HHHHHHHHHHHHhc
Q 044999 368 YNEADRVALAD--AGAVPIMIELLHDES-E---ELRDNAAESLINFS 408 (461)
Q Consensus 368 ~~~~~~~~~~~--~~~i~~L~~ll~~~~-~---~~~~~a~~~L~~l~ 408 (461)
...+ ..+.. .-.+|.|...++..+ . .+|.....++.-++
T Consensus 504 ~AA~--~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 504 DAAQ--EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHh--hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 7222 22221 125788888885533 3 34444444444443
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.61 E-value=8.4e-13 Score=137.24 Aligned_cols=276 Identities=15% Similarity=0.113 Sum_probs=217.1
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
..++.|...|.++|+.||..|+..|+.+.. ...++.|+..|.. +++++...|+.+|..+... .
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D------~d~~VR~~Aa~aL~~l~~~--~-- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGD------GAAAVRRAAAEGLRELVEV--L-- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhc--c--
Confidence 356788999999999999999999997651 1267888888865 5677888899999888652 1
Q ss_pred HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 044999 90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL 169 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 169 (461)
...+.+...|+++++.++..++..|..+...+ ...++..|++.++.+|..|+.+|..+..
T Consensus 684 -------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 -------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 11256778888899999999988887654222 3457788999999999999999987621
Q ss_pred hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh
Q 044999 170 REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 249 (461)
.+.+...+.++++++|..++.+|+.+.... ...++.|..+++++++.++..|+.+|..+.
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 244677889999999999999999985432 223788999999999999999999998875
Q ss_pred cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK 329 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~ 329 (461)
..+ ..++.+...+.++++.+|..|+.+|..+... ...+.|+.+|.++++.+|..|+.+|..+...
T Consensus 804 ~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~- 868 (897)
T PRK13800 804 CPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-----VAVPALVEALTDPHLDVRKAAVLALTRWPGD- 868 (897)
T ss_pred Ccc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----chHHHHHHHhcCCCHHHHHHHHHHHhccCCC-
Confidence 421 1235688889999999999999999887532 2238899999999999999999999997322
Q ss_pred CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ 365 (461)
Q Consensus 330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 365 (461)
....+.|...+++.++.|+..|..+|..
T Consensus 869 --------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 869 --------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2246678889999999999999998863
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.59 E-value=4.1e-12 Score=119.01 Aligned_cols=394 Identities=15% Similarity=0.091 Sum_probs=266.7
Q ss_pred hhcCCHHHHHHHHHHHHhhc--CCCchhHH-Hh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 044999 19 VVSGSEALQVKALTKLARVS--KFAPQDIL-AA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIG 94 (461)
Q Consensus 19 l~~~~~~~~~~a~~~l~~la--~~~~~~~l-~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 94 (461)
+-+.+++....|.....++. +...+..+ .. +++.++.+++. .+..+..+...+..+..+... .......+.
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~----e~~s~~~k~~~~~llns~f~~-eqd~v~svL 92 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSL----EDGSTELKNGFAVLLNSLFLG-EQDKVDSVL 92 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccc----cCCchhhhhhHHHHHHhHHhh-ccchHHHHH
Confidence 34556666677777777777 66666644 44 89999999987 666666676676777777775 677778888
Q ss_pred hcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhh--HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999 95 QSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNEN--RVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE 171 (461)
Q Consensus 95 ~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 171 (461)
+.+.++.|.+++++.| ..+.....+++..+.+.++.. .........++.+..++..........-+....+++..++
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch
Confidence 9999999999999998 777888889998777654322 2333344456666666664445555666666777777778
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH---HhhcCchh-HHH----HHhcCChH--HHHHhcccCCHHHHHHH
Q 044999 172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG---LLAVTGRA-RRL----LVELGVIP--GLVELFHIGDWTTKLVA 241 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~---~l~~~~~~-~~~----~~~~~~i~--~L~~ll~~~~~~~~~~a 241 (461)
.+..+...|+.+.+.-++...+...|..|+.+++ ++..+++. ... ....|+.+ ....++++++...+..+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 8888888888888888888778899999999999 77777765 222 23355555 45566778888888888
Q ss_pred HHHHHHHhcCccchhh------hhhcC----------------CHH-----HHHH-----HhCC-CChhHHHHHHH----
Q 044999 242 GNTLGVVAAHVEYITP------VAEAG----------------AIP-----LYAE-----LLQG-PDSTGKEISED---- 284 (461)
Q Consensus 242 ~~~L~~l~~~~~~~~~------~~~~g----------------~i~-----~L~~-----ll~~-~~~~~~~~a~~---- 284 (461)
+.++.++.....+... +.+.| ++. ..+. +... ..+.....+..
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 8888776543211110 01111 000 0000 0000 01111111111
Q ss_pred HH---HHhc-cCccc----------------------HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCch
Q 044999 285 VF---CILA-VSEAN----------------------ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSV 332 (461)
Q Consensus 285 ~L---~~l~-~~~~~----------------------~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~ 332 (461)
.+ +.++ ..+.+ ++++. ..+.......+...+.+|+.++.+++.. ...+
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 11111 11221 2222233445777888999999998854 3333
Q ss_pred hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
..+....+.+.|++++.+++..++..++.+|+|+.. ....+..+.+.|+|..+.+++.+.++.++..+.|+|.++..+.
T Consensus 413 tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 413 TGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred cCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 335677889999999999999999999999999999 7888999999999999999999999999999999999999887
Q ss_pred cchHHH
Q 044999 412 LQHERI 417 (461)
Q Consensus 412 ~~~~~l 417 (461)
+....+
T Consensus 493 de~~k~ 498 (678)
T KOG1293|consen 493 DEEEKF 498 (678)
T ss_pred hHHHHH
Confidence 654333
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.57 E-value=4.5e-12 Score=117.23 Aligned_cols=312 Identities=14% Similarity=0.126 Sum_probs=229.0
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhc-----CCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQS-----GVINSVLRLFPQSDDSFRTVLVKCLRV 123 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~~~~~~~~~l~~ 123 (461)
.+..++++++. . ..++..+.....+..+... ++.....+.+. .....++++|..++..+...++..+..
T Consensus 54 y~~~~l~ll~~----~-~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 54 YVKTFVNLLSQ----I-DKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHhc----c-CcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 66777888874 2 3455667677888888875 44444555543 456778889998888889999999987
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHH
Q 044999 124 FVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERA 200 (461)
Q Consensus 124 l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a 200 (461)
+...+..........-.++.+...+.+. +...+..++.++..+...++.|..+.+.++++.|+.+|+.. +..+++.+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 7764433211111111334555666654 45778888999999999999999999999999999999764 45899999
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-------cchhhhhhcCCHHHHHHHhC
Q 044999 201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHV-------EYITPVAEAGAIPLYAELLQ 272 (461)
Q Consensus 201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~ll~ 272 (461)
+-+++-++..++....+...+.++.++++++ +..+.+.+.++.+|.|+...+ .....++..|..+ ++..|.
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 9999999999988777778899999999999 456788999999999998742 2334556667544 455554
Q ss_pred CC---ChhHHHHHH-------HHHHHhccCcccHHHHH-------------------------------HHHHHHhc-cC
Q 044999 273 GP---DSTGKEISE-------DVFCILAVSEANANAIA-------------------------------EHLVRILR-EG 310 (461)
Q Consensus 273 ~~---~~~~~~~a~-------~~L~~l~~~~~~~~~i~-------------------------------~~l~~ll~-~~ 310 (461)
.. |+++.+..- .....++..++...++. ..|+++|. +.
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~ 366 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV 366 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 32 565543222 12233343333333322 77888884 56
Q ss_pred CHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 311 DNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 311 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
++.+..-||.=++.++. +|.++..+-+.|+=..+++++.+++++|+.+|+.++..+.
T Consensus 367 d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78888999999999995 5888888889999999999999999999999999988764
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.4e-11 Score=121.05 Aligned_cols=384 Identities=14% Similarity=0.141 Sum_probs=255.5
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH
Q 044999 14 RFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT 91 (461)
Q Consensus 14 ~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 91 (461)
.+...+-++ .+.+|..-+..+..++ +.-+. .+-+.++.|.+..++ .++..+..|...|..+.. ...++.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S------~~~~~rE~al~il~s~~~--~~~~~~ 153 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKS------PNPSLRESALLILSSLPE--TFGNTL 153 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcC------CCcchhHHHHHHHHhhhh--hhcccc
Confidence 344444444 5788888899999999 44444 666688889998886 445677779999999987 333332
Q ss_pred HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh---hhHHHHHHcCCHHHHHH----HhcCCChHHHHHHHHHHH
Q 044999 92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN---ENRVIVARNGGLEIVID----LLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~a~~~L~ 164 (461)
.-.-....+.+.+.+.+++..++..+++++..++...+ .....+.. .+|.++. ....++.+....++.+|.
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 22222345666777777766699999999986665443 33333332 3555554 445667777788888888
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHh--cCChHHHHHhcccC--C--
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVE--LGVIPGLVELFHIG--D-- 234 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~--~~~i~~L~~ll~~~--~-- 234 (461)
.+. ..+..-...+. .+++..+.+..+. ++.+|..|+.+|..++...+. .+.... ...++.++.++... +
T Consensus 232 El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 888 44444333222 2466666666655 779999999999999998665 222222 22345555555421 1
Q ss_pred ------------HHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--cHHH--
Q 044999 235 ------------WTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--NANA-- 298 (461)
Q Consensus 235 ------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~-- 298 (461)
......|..+|-.++.+-..+. +-.-.++.+-.++.+.++.-|..++.+|..++.... ....
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1234567788888887611111 111236778888999999999999999998865433 2222
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcC-Chh-hH
Q 044999 299 -IAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSY-NEA-DR 373 (461)
Q Consensus 299 -i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~-~~ 373 (461)
+.+.+++.|++++|.||..|+.+++.++.+ ....+.-......+.|+..+.+. +++++..|+.++-|++. .+. .-
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 228888889999999999999999999965 33334444456777888888754 78999999999999987 322 11
Q ss_pred HHHHhCCChH-HHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 374 VALADAGAVP-IMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 374 ~~~~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
....+ +.+. .+..+.+++.+.+++.++.+|...+...+
T Consensus 469 ~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 469 EPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 11111 2334 33335578999999999999999886654
No 33
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=2.6e-12 Score=114.34 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=191.7
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE 219 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 219 (461)
-++.|..+|.+.+..+|..|+..|..+. ....++.+..++.++++.+|..++++|+.+...... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4778999999999999999999998664 234567778888999999999999999998654322 1
Q ss_pred cCChHHHHHh-cccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH
Q 044999 220 LGVIPGLVEL-FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA 298 (461)
Q Consensus 220 ~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 298 (461)
...++.|..+ ++++++.++..|+.+|+++....... ...+++.+...+.++++.+|..++.+|..+.. ..
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-----~~ 159 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-----EA 159 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----HH
Confidence 1256777776 56889999999999999986542111 11235667778888899999999999976642 23
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh
Q 044999 299 IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD 378 (461)
Q Consensus 299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 378 (461)
.++.|+.++.++++.++..|+.+|+.+... ....++.|+..+.+.++.|+..|+++|+.+-. +
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~-------- 222 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-K-------- 222 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-h--------
Confidence 448999999999999999999999999322 22467789999999999999999999988643 2
Q ss_pred CCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhh
Q 044999 379 AGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQ 454 (461)
Q Consensus 379 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 454 (461)
.++|.|++.+++++ ++..++.+|.++... + . ++.+.++.+ .+.|..++..++.++++
T Consensus 223 -~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~---a------~p~L~~l~~------~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 223 -RVLSVLIKELKKGT--VGDLIIEAAGELGDK-T---L------LPVLDTLLY------KFDDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-h---H------HHHHHHHHh------hCCChhHHHHHHHHHhc
Confidence 35899999997765 667788888877642 1 1 134444443 23466677777776654
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.55 E-value=1.9e-12 Score=128.77 Aligned_cols=362 Identities=18% Similarity=0.138 Sum_probs=255.8
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
+....+..+++++.+.+...|+.+-..+..+.+..+. .+.-++..+.+-|.+ +++.++..|+.+|.++.. +
T Consensus 39 ~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~------~n~~~~~lAL~~l~~i~~--~ 109 (526)
T PF01602_consen 39 DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLILIINSLQKDLNS------PNPYIRGLALRTLSNIRT--P 109 (526)
T ss_dssp --GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHHHHCS------SSHHHHHHHHHHHHHH-S--H
T ss_pred CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHhhcC------CCHHHHHHHHhhhhhhcc--c
Confidence 3446778888999999999999888888888833222 222277888888875 556677779999999986 2
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
+ ..+. .++.+.+++.++++.||+.|+.++..+...+++. +... .++.+.+++.+.++.++..|+.++..+
T Consensus 110 ~-~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 110 E-MAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp H-HHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred c-hhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 2 2222 3678899999999999999999999888765443 2222 588899999999999999999999999
Q ss_pred hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999 167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 246 (461)
..+++....+ -...+..+.+++...++..+...++++..++...+....- ...++.+..++++.++.+...++.++.
T Consensus 180 ~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 180 KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2111111111 1223556666667889999999999999988766652210 346788888888888999999999999
Q ss_pred HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--HHHHHHhc-cCCHHHHHHHHHHHH
Q 044999 247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA--EHLVRILR-EGDNEANAAAADVLW 323 (461)
Q Consensus 247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~l~~ll~-~~~~~~~~~a~~~L~ 323 (461)
.+...+. .-..+++.+..++.+.++.++..++..|..++... ...+. ...+..+. ++++.++..++.+|.
T Consensus 257 ~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 257 KLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFNQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp HHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhhhhhhhheecCCCChhHHHHHHHHHh
Confidence 8877644 23345899999999999999999999999997665 22221 33444555 788999999999999
Q ss_pred HhhCCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999 324 DLAGYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAA 401 (461)
Q Consensus 324 ~l~~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 401 (461)
.++... +... +++.|..++. ..+++++..++..++.++. .+...... ++.+++++...++.+...+.
T Consensus 330 ~l~~~~-n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~~~~~~~~~~ 398 (526)
T PF01602_consen 330 KLANES-NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY-----VDTLLKLLEISGDYVSNEII 398 (526)
T ss_dssp HH--HH-HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH-----HHHHHHHHHCTGGGCHCHHH
T ss_pred hccccc-chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH-----HHHHHHhhhhccccccchHH
Confidence 998642 2222 4666888884 4478899999999999998 54433333 45555555544444444555
Q ss_pred HHHHHhc
Q 044999 402 ESLINFS 408 (461)
Q Consensus 402 ~~L~~l~ 408 (461)
..+.++.
T Consensus 399 ~~i~~ll 405 (526)
T PF01602_consen 399 NVIRDLL 405 (526)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 35
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.2e-13 Score=124.64 Aligned_cols=312 Identities=12% Similarity=0.048 Sum_probs=222.7
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH----cCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHH
Q 044999 97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR----NGGLEIVIDLLNSCNDGTRRYLLEILSALALLREV 172 (461)
Q Consensus 97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 172 (461)
.+++.|.++|.+.+...+..+..++.++++++.+.-..-.. .-.+|.++++.+++++.+|..|+.++..+......
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 35889999999998888999999999999765433222111 12578899999999999999999999887733222
Q ss_pred HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCc
Q 044999 173 RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV 252 (461)
Q Consensus 173 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 252 (461)
.-.+.-...++.++.+-.+.++++|...++++..|......+-.-+-.++++.++...++.+..+-..||.....++..+
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 22222234678888888888999999999999999888777554444668888888888999999999999999999887
Q ss_pred cchhhhhhc--CCHHHHHHHhCCCC-------------------------------------------------------
Q 044999 253 EYITPVAEA--GAIPLYAELLQGPD------------------------------------------------------- 275 (461)
Q Consensus 253 ~~~~~~~~~--g~i~~L~~ll~~~~------------------------------------------------------- 275 (461)
-.+..+... ..+|.|++-+...+
T Consensus 288 i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~ 367 (885)
T KOG2023|consen 288 ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFS 367 (885)
T ss_pred CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccc
Confidence 555555443 56777765443211
Q ss_pred -hhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh--cCCHHHHHHhhcC
Q 044999 276 -STGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN--SGAIPILVNLLRG 350 (461)
Q Consensus 276 -~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~~ 350 (461)
+.+|+..+.+|--|+..- +.-..+.|.+-+.|.+..+.+++.++-+++.++..- .+.++. ...+|.|+.+|.+
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhcc
Confidence 335555555555554321 111112266666777888999999999999998531 111221 2368889999999
Q ss_pred CCHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 351 ENDEVREKVSGAIAQLSY---NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 351 ~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
+.+-||.-++|+|.+.+. ..+..+.+.. .+..|++.+-+++..++++||.+++.+-++..
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999887 2232233322 34555555568999999999999999976654
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=5.7e-10 Score=111.39 Aligned_cols=328 Identities=12% Similarity=0.027 Sum_probs=211.6
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
+....++..++++.+.|..+|...-..+.+.+...+ +...-++..+.+-+.+ .+|.++..|+++|+++-. +
T Consensus 65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p-elalLaINtl~KDl~d------~Np~IRaLALRtLs~Ir~--~ 135 (746)
T PTZ00429 65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP-EKALLAVNTFLQDTTN------SSPVVRALAVRTMMCIRV--S 135 (746)
T ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHcCCc--H
Confidence 556677888888888888888888777777772221 1122267777777765 455666668888777775 2
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
...+ ..++.+.+.+.+.++.|++.|+.++.++-..++ ..+.+.|.++.|.+++.+.++.+...|+.+|..+
T Consensus 136 -~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 136 -SVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred -HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 2222 235678889999999999999999998876554 3445677889999999999999999999999999
Q ss_pred hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999 167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 246 (461)
.......- -...+.+..++..+..-++..+...+.+|..... ...... ...+..+...+++.++.+...|+.++.
T Consensus 207 ~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il 281 (746)
T PTZ00429 207 NDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVA 281 (746)
T ss_pred HHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 84322221 1233456778888877788888888888755322 222211 236788888899999999999999999
Q ss_pred HHhcCc--cchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh---ccCCHHHHHHHHHH
Q 044999 247 VVAAHV--EYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL---REGDNEANAAAADV 321 (461)
Q Consensus 247 ~l~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll---~~~~~~~~~~a~~~ 321 (461)
++.... +....+. ....+.++.+ .+.+++++..++..+..+..... ..+.+. ++.+ .++...++...+.+
T Consensus 282 ~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P--~lf~~~-~~~Ff~~~~Dp~yIK~~KLeI 356 (746)
T PTZ00429 282 NLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP--NLLRTN-LDSFYVRYSDPPFVKLEKLRL 356 (746)
T ss_pred HhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH--HHHHHH-HHhhhcccCCcHHHHHHHHHH
Confidence 987652 1111111 1122455555 35678888888877766544221 111122 2211 12233466666667
Q ss_pred HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
|..++.. +|...++ ..|.++..+.+.+++..++.+++.++.
T Consensus 357 L~~Lane-~Nv~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 357 LLKLVTP-SVAPEIL-----KELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHHHcCc-ccHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 7666643 2322222 335566666666666666666666665
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.47 E-value=7.7e-11 Score=110.62 Aligned_cols=396 Identities=13% Similarity=0.081 Sum_probs=242.8
Q ss_pred HHhHHHHHHHhhcCCH--HHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcH-HHHHHHHHHHHHH
Q 044999 9 EEAFNRFEQAVVSGSE--ALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTR-SIQQAAAYCLKQI 81 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~--~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~-~~~~~a~~~L~~l 81 (461)
-.+.+.+..+++.++. ..+...+..++.+. .......+.+ .++.++++|.. .|+ .+......++.++
T Consensus 50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~------sD~~~~le~~l~~lR~I 123 (678)
T KOG1293|consen 50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSE------SDSLNVLEKTLRCLRTI 123 (678)
T ss_pred hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcC------cchHhHHHHHHHHHHHH
Confidence 3566788888887664 44545566667666 4444444444 89999999985 333 3444488899999
Q ss_pred HhcCCchhHHHHHhc--CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHH
Q 044999 82 ASQADGALATEIGQS--GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYL 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a 159 (461)
.+. ++..-..+..+ ..+..+.-+++.+...+...-+....+++ ..++.+......|+.+.+.-++.......|..|
T Consensus 124 fet-~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rlaa 201 (678)
T KOG1293|consen 124 FET-SKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCNAGILEKINILLMYLSSKLRLAA 201 (678)
T ss_pred Hhc-ccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheeccccchhhHHHHHHhhhHHHHHHH
Confidence 885 32222222222 23444444444233332333332333444 455777888888888888777777788899999
Q ss_pred HHHHH---Hhh-CChHHHH----HHHhcCCHH--HHHHHHcCCCHHHHHHHHHHHHHhhcCchh-----H-HHHHhcC--
Q 044999 160 LEILS---ALA-LLREVRR----VLICLGGLR--YLVEAVSFGSMVSRERACQAIGLLAVTGRA-----R-RLLVELG-- 221 (461)
Q Consensus 160 ~~~L~---~l~-~~~~~~~----~~~~~~~l~--~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----~-~~~~~~~-- 221 (461)
+..+. ++. .++.... ...+.|+.+ .+.+++++++...+..++.++.++.....+ + ..+.+.|
T Consensus 202 L~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~ 281 (678)
T KOG1293|consen 202 LLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDS 281 (678)
T ss_pred HHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchH
Confidence 99999 666 4444332 333455555 566777888888888888888877654411 0 0111111
Q ss_pred --------------C---------hHHHHH-hcc-cCCHHHHH----HHHH---HHHHHhcC-ccchhhhhhcC------
Q 044999 222 --------------V---------IPGLVE-LFH-IGDWTTKL----VAGN---TLGVVAAH-VEYITPVAEAG------ 262 (461)
Q Consensus 222 --------------~---------i~~L~~-ll~-~~~~~~~~----~a~~---~L~~l~~~-~~~~~~~~~~g------ 262 (461)
+ +-.+.. ..+ -..+.... ...+ +-+.++.. ++++..+....
T Consensus 282 ~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~ 361 (678)
T KOG1293|consen 282 LIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHL 361 (678)
T ss_pred HHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhh
Confidence 0 000000 000 00011111 1111 11112222 33332222221
Q ss_pred ----------------CHHHHHHHhCCCChhHHHHHHHHHHHhccCc------ccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999 263 ----------------AIPLYAELLQGPDSTGKEISEDVFCILAVSE------ANANAIAEHLVRILREGDNEANAAAAD 320 (461)
Q Consensus 263 ----------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~l~~ll~~~~~~~~~~a~~ 320 (461)
....+.......+...+..++.++.+++..- ..+..+.+++++++..++..++..+++
T Consensus 362 ~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lg 441 (678)
T KOG1293|consen 362 EYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLG 441 (678)
T ss_pred hhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHH
Confidence 1111222222235667777777777764321 223334499999999999999999999
Q ss_pred HHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-hhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999 321 VLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-EADRVALADAGAVPIMIELLHDESEELR 397 (461)
Q Consensus 321 ~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 397 (461)
+|+|+. .....+..+...|+++.+..++.+.++.++..+.|+|+++.. + ...+..+.+.=.-..+..+.+++++.++
T Consensus 442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq 521 (678)
T KOG1293|consen 442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ 521 (678)
T ss_pred HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence 999999 568889999999999999999999999999999999999999 3 3333444443335667778899999999
Q ss_pred HHHHHHHHHhcCCCc
Q 044999 398 DNAAESLINFSEDPL 412 (461)
Q Consensus 398 ~~a~~~L~~l~~~~~ 412 (461)
+.+...|.|+..+..
T Consensus 522 eq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 522 EQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHHHhhcCcH
Confidence 999999999988853
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.44 E-value=1.3e-10 Score=107.61 Aligned_cols=311 Identities=14% Similarity=0.128 Sum_probs=224.5
Q ss_pred CHHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHc-----CCHHHHHHHhcCCChHHHHHHHHHHHHhhC-Ch
Q 044999 98 VINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARN-----GGLEIVIDLLNSCNDGTRRYLLEILSALAL-LR 170 (461)
Q Consensus 98 ~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~ 170 (461)
....++++++. .++++.+.....+..+...++.....|.+. .....++.+|...+..+...|+.++..+.. ..
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence 45667777764 556667777777778887776655666654 567778889998888999999999999873 22
Q ss_pred HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHH
Q 044999 171 EVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGV 247 (461)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~ 247 (461)
.........-....+...+.+. +...+..++.++..+...++.|..+.+.++++.|+.+++.. +...+..++-+++-
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl 213 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL 213 (429)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 2111111111233455555544 46788899999999999999999999999999999999853 56888999999999
Q ss_pred HhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-------cHHHHH----HHHHHHhccC---CH
Q 044999 248 VAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-------NANAIA----EHLVRILREG---DN 312 (461)
Q Consensus 248 l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-------~~~~i~----~~l~~ll~~~---~~ 312 (461)
++.+++....+...+.++.++++++.. .+.+.+.++.+|.|+...+. ....++ +.+++.|... |+
T Consensus 214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De 293 (429)
T cd00256 214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE 293 (429)
T ss_pred HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH
Confidence 999977777777789999999999866 57788899999999965331 122333 6666666543 45
Q ss_pred HHHHHH-------HHHHHHhhCC---------------C---------CchhHHhhcC--CHHHHHHhhc-CCCHHHHHH
Q 044999 313 EANAAA-------ADVLWDLAGY---------------K---------HSVPVIRNSG--AIPILVNLLR-GENDEVREK 358 (461)
Q Consensus 313 ~~~~~a-------~~~L~~l~~~---------------~---------~~~~~l~~~g--~i~~L~~ll~-~~~~~v~~~ 358 (461)
++.+.. -.-+..+++. | +|...+-+.+ .+..|++++. +.++.+..-
T Consensus 294 dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laV 373 (429)
T cd00256 294 DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAV 373 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeeh
Confidence 433211 1111222211 1 2233333332 3678889985 456778888
Q ss_pred HHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 359 VSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 359 a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
||.=++.+++ .|..+..+.+.|+=..+++++.+++++++.+|..++..|.
T Consensus 374 Ac~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 374 ACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888999999 8999999999999999999999999999999999998774
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.42 E-value=1e-08 Score=102.60 Aligned_cols=287 Identities=16% Similarity=0.132 Sum_probs=183.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
.++.|.+-+.+.++.+|-.|++.++.+-. ..+.+ .++.+.+.+.. .+|-+++.|+.++.++... ++
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D------~~pYVRKtAalai~Kly~~-~p-- 172 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVAD------PDPYVRKTAAMGLGKLFHD-DM-- 172 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhh-Cc--
Confidence 45777888889999999999999988772 12333 67777777765 5678888899999999874 33
Q ss_pred HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-C
Q 044999 90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-L 168 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~ 168 (461)
+.+.+.+.++.|.+++.+.++.|...|..++..+...++.. .-...+.+..++..+...++..+...+.+|.... .
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS 249 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence 23445678899999999999999999999999887654322 2223445667777787778888888888886654 2
Q ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch-h-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999 169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR-A-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246 (461)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 246 (461)
+.+.. ...+..+...|++.++.+...|++++.+++...+ . ..... ....+.++.+ .+.+++++..++..+.
T Consensus 250 ~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 250 DKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIH 322 (746)
T ss_pred CcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHH
Confidence 22211 2357778888999999999999999999976532 2 11111 1122455555 3556778887777766
Q ss_pred HHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 247 VVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 247 ~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
.+.... ..+.... +..+.-... +...++...+.+|..++. +.+...+...|.....+.+.+.+..++.+++.++
T Consensus 323 ~i~~~~---P~lf~~~-~~~Ff~~~~-Dp~yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 323 ALLVIF---PNLLRTN-LDSFYVRYS-DPPFVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHHHHC---HHHHHHH-HHhhhcccC-CcHHHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 655431 1111111 122211122 223456666666665542 3333444444555555555556666666666655
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=2.1e-11 Score=95.34 Aligned_cols=117 Identities=25% Similarity=0.288 Sum_probs=108.4
Q ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch
Q 044999 134 IVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR 212 (461)
Q Consensus 134 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 212 (461)
.+.+.|+++.+++++.++++.++..++.+|.+++.+ ++....+.+.|+++.+++++.++++.++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 366889999999999999999999999999999955 8888899999999999999999999999999999999999887
Q ss_pred h-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 213 A-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 213 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
. ...+.+.|+++.+++++.+.+..+++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 6 7778889999999999999999999999999999863
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-10 Score=112.27 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=173.5
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~ 127 (461)
-+++|+.=|+. . .|+..|..|+.-|+.+...|+++.-..+--.-.+|.|+.+|++ .+.++...|++++.+|+.-
T Consensus 168 k~kkLL~gL~~----~-~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 168 KAKKLLQGLQA----E-SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHHHhccc----c-CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 46677777774 3 3788999999999999988787776666666789999999996 4789999999999999998
Q ss_pred ChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 206 (461)
-+.....+++.+++|.|++ ++.-..-++.+.++.+|..++.. .-..+.+.|++-..+.++..-+...|+.|+.+..|
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999988 56666778999999999999832 23457889999999999998899999999999999
Q ss_pred hhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----ccchhhhhhcCCHHHHHHHh
Q 044999 207 LAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VEYITPVAEAGAIPLYAELL 271 (461)
Q Consensus 207 l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll 271 (461)
+|..-.. -..+++ .+|.|..+|+..+....+.++-++..++.. ++.-+++..+|.+....+++
T Consensus 321 ~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL 389 (1051)
T ss_pred HHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence 9876543 455555 799999999999999999999999988765 33334555556665555554
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=3.3e-11 Score=94.14 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=108.0
Q ss_pred HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h
Q 044999 92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R 170 (461)
Q Consensus 92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~ 170 (461)
.+.+.|+++.++++++++++.++..++.++.+++...++....+.+.|+++.+++++.++++.++..++.+|.+++.+ +
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 456889999999999999999999999999999988789999999999999999999999999999999999999954 4
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 171 EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
.....+.+.|+++.+++++.+.+..++..++.+|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66777788999999999999999999999999999986
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.3e-10 Score=105.59 Aligned_cols=384 Identities=16% Similarity=0.170 Sum_probs=245.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHH
Q 044999 14 RFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEI 93 (461)
Q Consensus 14 ~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 93 (461)
.+++-+.+.++.+|.-....+..+++.......-+.+|.|.++|.+ +|...+..|..+|..++++.........
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s------~d~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDS------PDYNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcC------CcccccchhHHHHHHHHhhhHHHHhhhc
Confidence 3445555666666655555555565444433445599999999987 2333677799999999996222222222
Q ss_pred Hh---cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC
Q 044999 94 GQ---SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA-RNGGLEIVIDLLNSCNDGTRRYLLEILSALALL 169 (461)
Q Consensus 94 ~~---~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 169 (461)
.. .-.+|.+++..+++++.+|..+..|+-.+.-... +..+. -...++.+..+..+.++++|...|.++.-+...
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 11 1258999999999999999999999986654321 22222 123466677777888999999999999988744
Q ss_pred hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCC-------------
Q 044999 170 REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGD------------- 234 (461)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~------------- 234 (461)
...+-.=.=.++++.++...++.++++--.|+.....++..+-.+..+.. ...+|.|+.-+..++
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~ 325 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE 325 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence 43332222235788888888889999999999999999998854555443 345565554443111
Q ss_pred -------------------------------------------HHHHHHHHHHHHHHhcCccchhhhhhcCC----HHHH
Q 044999 235 -------------------------------------------WTTKLVAGNTLGVVAAHVEYITPVAEAGA----IPLY 267 (461)
Q Consensus 235 -------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~----i~~L 267 (461)
...|.-.+.+|--|+. +..... +|.|
T Consensus 326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlL 398 (885)
T KOG2023|consen 326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLL 398 (885)
T ss_pred cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHH
Confidence 1122222223333332 112222 4555
Q ss_pred HHHhCCCChhHHHHHHHHHHHhccCc-----ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC---CCchhHHhhcC
Q 044999 268 AELLQGPDSTGKEISEDVFCILAVSE-----ANANAIAEHLVRILREGDNEANAAAADVLWDLAGY---KHSVPVIRNSG 339 (461)
Q Consensus 268 ~~ll~~~~~~~~~~a~~~L~~l~~~~-----~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~l~~~g 339 (461)
-+.|.++++.+++.+.-+|+.++..- ..-.+++|.++.+|.+..+-+|.-.+|+|...+.. .+..+.+. .
T Consensus 399 k~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--p 476 (885)
T KOG2023|consen 399 KEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--P 476 (885)
T ss_pred HHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--H
Confidence 56666778999999999999886432 22345569999999999999999999999988853 22222222 1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCCCcch
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD--AGAVPIMIELL---HDESEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
++..|++.+-+++..||++|+.+++.+-... ...++. ..++..|+..+ +.++--+..-|.++|+.=+.+.-+.
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A--~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA--GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK 554 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence 3444555566889999999999998887622 122221 11233444433 3456667777888887776555444
Q ss_pred HH
Q 044999 415 ER 416 (461)
Q Consensus 415 ~~ 416 (461)
++
T Consensus 555 ~~ 556 (885)
T KOG2023|consen 555 PA 556 (885)
T ss_pred HH
Confidence 44
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.4e-08 Score=97.39 Aligned_cols=329 Identities=15% Similarity=0.165 Sum_probs=239.6
Q ss_pred HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC--CCHHHHHHHHHHHHH
Q 044999 46 LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ--SDDSFRTVLVKCLRV 123 (461)
Q Consensus 46 l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~ 123 (461)
-.+.|++|++.+.+ . .-++.++.|+.+|..++. ..+..+... |++.++..|.. .|++....+...+++
T Consensus 20 ~aETI~kLcDRves----s-TL~eDRR~A~rgLKa~sr----kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 20 AAETIEKLCDRVES----S-TLLEDRRDAVRGLKAFSR----KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLI 89 (970)
T ss_pred HHhHHHHHHHHHhh----c-cchhhHHHHHHHHHHHHH----HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 34489999999986 3 346678889999999998 355555444 56888888875 467888888888887
Q ss_pred HhccCh------hhH-----------HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHHHHhc-CCHH
Q 044999 124 FVTFGN------ENR-----------VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICL-GGLR 183 (461)
Q Consensus 124 l~~~~~------~~~-----------~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~-~~l~ 183 (461)
+..+++ ..+ ..+...+.+..++..++..|..+|.+++..+.++. ...+.+..+... -++.
T Consensus 90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS 169 (970)
T ss_pred HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence 776542 111 12234577888999999999999999999999987 455667776664 4999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccC----CHHHHHHHHHHHHHHhcC-ccchhh
Q 044999 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG----DWTTKLVAGNTLGVVAAH-VEYITP 257 (461)
Q Consensus 184 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~-~~~~~~ 257 (461)
.++.+|.+..+.+|..++..|..++..... ++.++-.+++..|+.++..+ ..-+.+.++..|-||-.+ ..++..
T Consensus 170 ~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~ 249 (970)
T KOG0946|consen 170 KLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF 249 (970)
T ss_pred HHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence 999999999999999999999999999988 66666688999999999843 235788899999999887 788899
Q ss_pred hhhcCCHHHHHHHhCCC---ChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC------
Q 044999 258 VAEAGAIPLYAELLQGP---DSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY------ 328 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~------ 328 (461)
+.+.+.+|.|..+|... +.++..+...-..| ...++.++..+...
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~N--------------------------v~~~Lqivr~lVsP~Nt~~~ 303 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQN--------------------------VIEALQIVRSLVSPGNTSSI 303 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHH--------------------------HHHHHHHHHHhcCCCCcHHH
Confidence 99999999999887543 32332222211111 11444455555431
Q ss_pred -CCchhHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-ChhhHHHHHhCCC------hHH----HHHhccC-CC
Q 044999 329 -KHSVPVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-NEADRVALADAGA------VPI----MIELLHD-ES 393 (461)
Q Consensus 329 -~~~~~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~------i~~----L~~ll~~-~~ 393 (461)
..++..+...+++..|..++.++ ..+++..+..+++++.+ +..++..+.+-.. .|. ++.+..+ ..
T Consensus 304 ~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~ 383 (970)
T KOG0946|consen 304 THQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQP 383 (970)
T ss_pred HHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCC
Confidence 24456778899999999998765 46788999999999999 8888888875321 122 3333344 45
Q ss_pred HHHHHHHHHHHHHhcCC
Q 044999 394 EELRDNAAESLINFSED 410 (461)
Q Consensus 394 ~~~~~~a~~~L~~l~~~ 410 (461)
...|..+..++.....+
T Consensus 384 ~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 384 FSLRCAVLYCFRSYLYD 400 (970)
T ss_pred chHHHHHHHHHHHHHhc
Confidence 56677777777666544
No 45
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.27 E-value=7.1e-09 Score=92.86 Aligned_cols=312 Identities=16% Similarity=0.151 Sum_probs=220.0
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh-------cCCHHHHHhcCCCCCHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ-------SGVINSVLRLFPQSDDSFRTVLVKCL 121 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~l~~L~~ll~~~~~~~~~~~~~~l 121 (461)
.+.+++.++.. .+.++..+.....+..+... +. .+..++. .-.-...+++|...++-+.....+.+
T Consensus 66 ~v~~fi~LlS~-----~~kdd~v~yvL~li~DmLs~-d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il 138 (442)
T KOG2759|consen 66 YVKTFINLLSH-----IDKDDTVQYVLTLIDDMLSE-DR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL 138 (442)
T ss_pred HHHHHHHHhch-----hhhHHHHHHHHHHHHHHHhh-Cc-hHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence 67788888874 23344556566666666663 32 2222221 11246678888888988888788888
Q ss_pred HHHhccChhhHHHHHHcC-CHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHH
Q 044999 122 RVFVTFGNENRVIVARNG-GLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSR 197 (461)
Q Consensus 122 ~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~ 197 (461)
..++...... ....+.. ....+...+.+ .+++....+.++|..+...++.|-.++..+++..++..+.+. +-.++
T Consensus 139 s~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 139 SKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred HHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHH
Confidence 8777533211 1111111 12234445555 556788889999999999999999999999999999998432 67999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcCc-------cchhhhhhcCCHHHHHH
Q 044999 198 ERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAHV-------EYITPVAEAGAIPLYAE 269 (461)
Q Consensus 198 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~g~i~~L~~ 269 (461)
.+.+.+++-|+.++...+.+...+.++.|.++++.. .+.+.+.++.++.|+.... +....++..++.+.+-.
T Consensus 218 YqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~ 297 (442)
T KOG2759|consen 218 YQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQS 297 (442)
T ss_pred HHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHH
Confidence 999999999999999988888899999999999954 6678888999999998774 23345555665555444
Q ss_pred HhCC--CChhHHHHHHH-------HHHHhccCcccHHHHH-------------------------------HHHHHHhcc
Q 044999 270 LLQG--PDSTGKEISED-------VFCILAVSEANANAIA-------------------------------EHLVRILRE 309 (461)
Q Consensus 270 ll~~--~~~~~~~~a~~-------~L~~l~~~~~~~~~i~-------------------------------~~l~~ll~~ 309 (461)
+-.. .|+++....-. -...|+..++...++. ..|+.+|.+
T Consensus 298 L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~ 377 (442)
T KOG2759|consen 298 LEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET 377 (442)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence 4432 25554432221 1222333333333222 778888866
Q ss_pred C-CHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 310 G-DNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 310 ~-~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
. +|.+..-|+.=++...+ +|+.+..+.+.|+=+.++++++.++++|+-.|+.|+..|..
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 5 58888999999999995 69999999999999999999999999999999988876643
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.8e-08 Score=94.30 Aligned_cols=376 Identities=13% Similarity=0.069 Sum_probs=240.0
Q ss_pred CHHHHHHHHHHHHhhc--CCC-chhHHHh------------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999 23 SEALQVKALTKLARVS--KFA-PQDILAA------------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la--~~~-~~~~l~~------------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 87 (461)
....|..|...|.|-. ++. .+.+..+ +=..+++.|.+ ..|..-..|+.++..++.-.-+
T Consensus 50 ~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~------~ep~~~s~Aaq~va~IA~~ElP 123 (859)
T KOG1241|consen 50 SDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGS------PEPRRPSSAAQCVAAIACIELP 123 (859)
T ss_pred cHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------CCCCccchHHHHHHHHHHhhCc
Confidence 4567777777887755 332 2222222 22335566764 2233445588999999873111
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHH-HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHH
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDS-FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILS 164 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~ 164 (461)
.++ =.+.+..+++......+. ++..++.++..++.+-......-..+.++..++.-... ++..+|..|+.+|.
T Consensus 124 ~n~----wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~ 199 (859)
T KOG1241|consen 124 QNQ----WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALY 199 (859)
T ss_pred hhh----CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHH
Confidence 111 012345555555444444 67888888888887543222222234455556654443 35589999999998
Q ss_pred HhhCCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999 165 ALALLR--EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLV 240 (461)
Q Consensus 165 ~l~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~ 240 (461)
+-.+.. .+....-+.-+++..++.-++++.+++..|+.+|..+..-.-. ..+| ....+..-+..++++++++...
T Consensus 200 nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks~~deValQ 278 (859)
T KOG1241|consen 200 NSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKSDNDEVALQ 278 (859)
T ss_pred HHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHH
Confidence 866221 1122222333677788888889999999999999988665433 3333 3335566666777999999999
Q ss_pred HHHHHHHHhcCc-c-----------ch----hhhhh---cCCHHHHHHHhCCC-------ChhHHHHHHHHHHHhcc--C
Q 044999 241 AGNTLGVVAAHV-E-----------YI----TPVAE---AGAIPLYAELLQGP-------DSTGKEISEDVFCILAV--S 292 (461)
Q Consensus 241 a~~~L~~l~~~~-~-----------~~----~~~~~---~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~--~ 292 (461)
+....++++..+ + .+ ..+.+ .+++|.|+++|... ++.....|..+|.-++. .
T Consensus 279 aiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~ 358 (859)
T KOG1241|consen 279 AIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG 358 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc
Confidence 998888887531 1 11 11111 26788899988542 45677777777777753 2
Q ss_pred cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC-chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch
Q 044999 293 EANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH-SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE 370 (461)
Q Consensus 293 ~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~ 370 (461)
++.-..+.+.+-.-++++++.-++.|+.+++.+-..++ .+..-...+++|.++.++.+++-.++..+.|+++.++. .+
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 33233333666667889999999999999999987643 44444566899999999999999999999999999998 44
Q ss_pred hhH-HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 371 ADR-VALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 371 ~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
+.. ........++.++.-+ ...|.+..+++|++.+|+..
T Consensus 439 e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred hhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence 211 1111112234444433 36789999999999999843
No 47
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=5.6e-09 Score=96.51 Aligned_cols=389 Identities=14% Similarity=0.097 Sum_probs=247.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHhhHHHHHHh-hccCCCCCCCcHHHHHHHHHHHHHHHhc-CCch
Q 044999 15 FEQAVVSGSEALQVKALTKLARVS----KFAPQDILAATIPILARL-LGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGA 88 (461)
Q Consensus 15 l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~~i~~l~~~-l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 88 (461)
+.+-+.+.-.+-|..|+.-+-++. +.....+++++|+.+.+- ..+ ...+ ..+.+...+...+.. |.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s----~~~n--~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYS----PHAN--MRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccC----cccc--cccchHHHHHHHHHHhcccc
Confidence 445566666777888887777776 566666777788866544 433 2221 233444444444331 1222
Q ss_pred hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999 89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL 168 (461)
Q Consensus 89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 168 (461)
...-.+.+++.+..+.+.+..++-.|+..+.+++... ..........++..+.++..+++..++..| +.+-.+-.
T Consensus 79 ---~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLik 153 (675)
T KOG0212|consen 79 ---AGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIK 153 (675)
T ss_pred ---HHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHH
Confidence 2245677899999999999999999999999888532 222222334466777777777777665443 33332221
Q ss_pred C--hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999 169 L--REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246 (461)
Q Consensus 169 ~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 246 (461)
+ .+....+-=.+.+|.+-+-+...++..|.....-+..+-..++..-.=.-...++.|+.++.+++++++..+-.++.
T Consensus 154 dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 154 DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 1 01111222234555555555566888899888888888666554211112447889999999999999977766666
Q ss_pred HHhcCccchhhh-hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH--HH---HHHHHHhccCCHH-HHHHHH
Q 044999 247 VVAAHVEYITPV-AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA--IA---EHLVRILREGDNE-ANAAAA 319 (461)
Q Consensus 247 ~l~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--i~---~~l~~ll~~~~~~-~~~~a~ 319 (461)
++-..-.+.... --...++.++.-+.++++.++..|+.-+..+..-+...-. .. ..++.++.+..+. .++.+.
T Consensus 234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 654331121111 1224578888889999999999998777777544333221 11 4444555554442 333332
Q ss_pred ---HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHH
Q 044999 320 ---DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEEL 396 (461)
Q Consensus 320 ---~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 396 (461)
..+..++..+...+.+--...++.|.+++.+...+.+..++.-+..+-....++-......+.+.|+.-+.+.+.++
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~v 393 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEV 393 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHH
Confidence 23445554444443333234688899999999999999999777777775555555566778999999999999999
Q ss_pred HHHHHHHHHHhcCCCcch
Q 044999 397 RDNAAESLINFSEDPLQH 414 (461)
Q Consensus 397 ~~~a~~~L~~l~~~~~~~ 414 (461)
...+...+.+++.++...
T Consensus 394 vl~~L~lla~i~~s~~~~ 411 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSP 411 (675)
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 999999999999988764
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.4e-08 Score=97.13 Aligned_cols=399 Identities=15% Similarity=0.195 Sum_probs=244.9
Q ss_pred CCCcHHHhHHHHHHHhhcCCHH-HHHHHHHHHHhhc-CCCchhHHHh----hHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEA-LQVKALTKLARVS-KFAPQDILAA----TIPILARLLGENNFSGNLTRSIQQAAAYC 77 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~-~~~~a~~~l~~la-~~~~~~~l~~----~i~~l~~~l~~~~~~~~~~~~~~~~a~~~ 77 (461)
|...|.+.++.+..-..++.+. +|..++.++|.+| +-.+. .+.+ ++..++.-.+. .+.+..++..|..+
T Consensus 123 P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk----~e~s~~vRLaa~~a 197 (859)
T KOG1241|consen 123 PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRK----EETSAAVRLAALNA 197 (859)
T ss_pred chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccc----cCCchhHHHHHHHH
Confidence 6677999999998888877654 8999999999999 44444 3333 77788877776 66666677778888
Q ss_pred HHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999 78 LKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRR 157 (461)
Q Consensus 78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 157 (461)
|.+-............-.+-+++...+.-.+++..++..+..|+..+..-..+.-........+..-+.-+.++++.+..
T Consensus 198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal 277 (859)
T KOG1241|consen 198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL 277 (859)
T ss_pred HHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 88766531111222222333566667778889999999999999877754444433333333455555666788888888
Q ss_pred HHHHHHHHhhCC-hHH----H-----------HHHHh---cCCHHHHHHHHcCC--------------------------
Q 044999 158 YLLEILSALALL-REV----R-----------RVLIC---LGGLRYLVEAVSFG-------------------------- 192 (461)
Q Consensus 158 ~a~~~L~~l~~~-~~~----~-----------~~~~~---~~~l~~l~~~l~~~-------------------------- 192 (461)
.+++..+++|.. -+. . ..+.+ .+.+|.|+++|...
T Consensus 278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~ 357 (859)
T KOG1241|consen 278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh
Confidence 888888877722 110 0 01111 14566677776542
Q ss_pred -------------------CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999 193 -------------------SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH- 251 (461)
Q Consensus 193 -------------------~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~- 251 (461)
++.-|..+..+++.+-..++. +..-...++++.++.++.++.--++..+.++++.++..
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 222345566666666555554 44444467899999999988888899999999999987
Q ss_pred ccch-hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC--c---cc-----HHHHHHHHHH-Hhc---c---CCHH
Q 044999 252 VEYI-TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS--E---AN-----ANAIAEHLVR-ILR---E---GDNE 313 (461)
Q Consensus 252 ~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~---~~-----~~~i~~~l~~-ll~---~---~~~~ 313 (461)
++.+ ......+.++.++.-+. +.|.+..++++++.+|+.. + ++ .....+.+++ ++. . ....
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 3222 22223355666666665 4688999999999999621 1 01 1112233332 332 1 2356
Q ss_pred HHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHH----hhc-----CCC----HHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999 314 ANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVN----LLR-----GEN----DEVREKVSGAIAQLSY-NEADRVALAD 378 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~----ll~-----~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~ 378 (461)
.|..|-.+|..+..+ ++..-.++. +....+.. -++ ..+ .+++...+.+|..+.+ ... +..-..
T Consensus 517 LR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~ 594 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVS 594 (859)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHH
Confidence 888999999999865 333222221 22222222 222 111 2355566677776666 222 222222
Q ss_pred CCChHHHHHhccC-CCHHHHHHHHHHHHHhcCC
Q 044999 379 AGAVPIMIELLHD-ESEELRDNAAESLINFSED 410 (461)
Q Consensus 379 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 410 (461)
...+..+++++++ ++..+.+.|..++..++.+
T Consensus 595 d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 595 DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 3457778888866 4455666666666666544
No 49
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.3e-08 Score=83.55 Aligned_cols=384 Identities=17% Similarity=0.167 Sum_probs=246.5
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch--hH--HHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA--LA--TEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVF 124 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l 124 (461)
..+.|-.-|.. + |..+...++..+..+.++ .+. .. ..++..+.++.++...-..|.++...+...+..+
T Consensus 83 lmpdLQrGLia----d--dasVKiLackqigcilEd-cDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 83 LMPDLQRGLIA----D--DASVKILACKQIGCILED-CDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred hhHHHHhcccC----C--cchhhhhhHhhhhHHHhc-CchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44444444444 3 333444488888888885 332 22 2234678899999999999999999999999988
Q ss_pred hccChhhHHHHHHcCCHHHH--HHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHH
Q 044999 125 VTFGNENRVIVARNGGLEIV--IDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERA 200 (461)
Q Consensus 125 ~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a 200 (461)
+... ..-..+.++...+.+ ..+....+.-.|...+..+..+. ..++........|.+..|..-++- .+.-++..+
T Consensus 156 alfp-aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 156 ALFP-AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred HhcH-HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 8543 555666655544433 33444556667888888888887 778888888888988888777765 477788999
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHH----HHHhcCccchhhhhhc--CCHHHHHHHhC
Q 044999 201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTL----GVVAAHVEYITPVAEA--GAIPLYAELLQ 272 (461)
Q Consensus 201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L----~~l~~~~~~~~~~~~~--g~i~~L~~ll~ 272 (461)
+.....|+.....++.+.+.|.++.+..++. +.+|--.-.++... ++.+..+-..+.+.+. .++....+++.
T Consensus 235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 9999999999999999999999999999987 33443333333333 3333322233333332 34556677788
Q ss_pred CCChhHHHHHHHHHHHhccCcccHHHHH----HH----HHHHhccCCHHHHHHHHHHHHHhhCC---C-----Cchh---
Q 044999 273 GPDSTGKEISEDVFCILAVSEANANAIA----EH----LVRILREGDNEANAAAADVLWDLAGY---K-----HSVP--- 333 (461)
Q Consensus 273 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~----l~~ll~~~~~~~~~~a~~~L~~l~~~---~-----~~~~--- 333 (461)
..+++....|..+++.+.++.+....+. |. +..........-++.++.+|.+++.. + +.+.
T Consensus 315 mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeer 394 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEER 394 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHH
Confidence 8899999999999999988888777666 23 33333333344566778888888753 1 1111
Q ss_pred ---HHh-------hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHHHHhccC---CCHHHHHH
Q 044999 334 ---VIR-------NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD-RVALADAGAVPIMIELLHD---ESEELRDN 399 (461)
Q Consensus 334 ---~l~-------~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~---~~~~~~~~ 399 (461)
.+. +..-.+.+...++.+.++++..+.+++..++..|=+ +..+.+.+.+..+.+.-.. -..+.+.+
T Consensus 395 lrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYe 474 (524)
T KOG4413|consen 395 LRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYE 474 (524)
T ss_pred HHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHH
Confidence 111 112345566777788899999999999999985544 4444555655554443321 13344555
Q ss_pred HHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHH
Q 044999 400 AAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSM 447 (461)
Q Consensus 400 a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 447 (461)
++.++.+ .....+..+.|...++-..+.+...+..+++|+-
T Consensus 475 ccKAiae-------aflcaeffddPnrLklgdkLqEavrsGPYmsKkh 515 (524)
T KOG4413|consen 475 CCKAIAE-------AFLCAEFFDDPNRLKLGDKLQEAVRSGPYMSKKH 515 (524)
T ss_pred HHHHHHH-------HHHHHHHcCChhhhhHHHHHHHHhccCCcccccc
Confidence 6665543 2233444455554444444444444445555543
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.17 E-value=2.4e-09 Score=98.09 Aligned_cols=226 Identities=16% Similarity=0.135 Sum_probs=160.5
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh------cCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ------SGVINSVLRLFPQSDDSFRTVLVKCLR 122 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~~~~~~~~l~ 122 (461)
....++++|+. -+.+++..+.....+..+..+ ++.....+.. ......+++++.++|..++..++..+.
T Consensus 56 ~~~~~l~lL~~----~~~~~d~v~yvL~li~dll~~-~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 56 YASLFLNLLNK----LSSNDDTVQYVLTLIDDLLSD-DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ------HHHHH----H---HHHHHHHHHHHHHHHH--SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45666666665 223456788888999999986 4455555544 125788889999999999999999999
Q ss_pred HHhccChhhHHHHHHcCCHHHHHHHhcC----CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH------cCC
Q 044999 123 VFVTFGNENRVIVARNGGLEIVIDLLNS----CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV------SFG 192 (461)
Q Consensus 123 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l------~~~ 192 (461)
.+....+....... .+.++.++..+++ .+...+..++.+|.++...++.|..+.+.++++.+..++ .+.
T Consensus 131 ~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 131 SLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp HHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred HHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 88865544333322 4456777777654 344677999999999999999999999999999999999 222
Q ss_pred -CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHH
Q 044999 193 -SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYA 268 (461)
Q Consensus 193 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~ 268 (461)
+..+++.++.+++.|+.+++....+.+.+.++.|+++++ ...+++.+.++.++.|+..... +...++..|+++.+-
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~ 289 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQ 289 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHH
Confidence 458999999999999999999888999889999999998 5578899999999999998844 778888888666666
Q ss_pred HHhCCC--ChhHHH
Q 044999 269 ELLQGP--DSTGKE 280 (461)
Q Consensus 269 ~ll~~~--~~~~~~ 280 (461)
.+.... |+++.+
T Consensus 290 ~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 290 NLSERKWSDEDLTE 303 (312)
T ss_dssp HHHSS--SSHHHHH
T ss_pred HHhcCCCCCHHHHH
Confidence 655433 677655
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.16 E-value=1.2e-09 Score=99.96 Aligned_cols=228 Identities=16% Similarity=0.189 Sum_probs=162.1
Q ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHhh-CChHHHHHHHhc------CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Q 044999 141 LEIVIDLLNS--CNDGTRRYLLEILSALA-LLREVRRVLICL------GGLRYLVEAVSFGSMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 141 i~~L~~ll~~--~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~------~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 211 (461)
...++.+++. .++++..+.+..+..+. .++...+.+... .....+++++.++|..++..++.++..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5556666654 57789999999999988 555455444441 26788889999999999999999999998887
Q ss_pred hhHHHHHhcCChHHHHHhccc----CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC-----CCChhHHHHH
Q 044999 212 RARRLLVELGVIPGLVELFHI----GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ-----GPDSTGKEIS 282 (461)
Q Consensus 212 ~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~a 282 (461)
+....-...+.++.++.++.+ ++...+..++.+|.++...++.|..+.+.++++.+..++. +....
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~----- 211 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG----- 211 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H-----
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc-----
Confidence 774433224566777777764 3456678999999999999999999999999999999983 22111
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-CCHHHHHHHHH
Q 044999 283 EDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSG 361 (461)
Q Consensus 283 ~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~v~~~a~~ 361 (461)
.+++..++.++|.|+.+++..+.+.+.+.++.|+++++. ..+.+.+-++.
T Consensus 212 -----------------------------~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 212 -----------------------------IQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp -----------------------------HHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred -----------------------------hhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 234558899999999999999999999999999999985 46778999999
Q ss_pred HHHHhcCChh--hHHHHHhCCChHHHHHhcc--CCCHHHHHHHHH
Q 044999 362 AIAQLSYNEA--DRVALADAGAVPIMIELLH--DESEELRDNAAE 402 (461)
Q Consensus 362 ~L~~l~~~~~--~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~ 402 (461)
++.|+..... +...++..|+++.+-.+.. -.++++.+-.-.
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999443 8888888886666655553 267777765433
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1e-08 Score=90.68 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=160.7
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999 64 GNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI 143 (461)
Q Consensus 64 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~ 143 (461)
.+-+++....|..-|..+++ +..+...+...|++..++..+++.+..+|..|++.+...+..++..+..+.+.|+.+.
T Consensus 93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 33455566669999999999 8889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCchh-HHHHH
Q 044999 144 VIDLLNSCND-GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF--GSMVSRERACQAIGLLAVTGRA-RRLLV 218 (461)
Q Consensus 144 L~~ll~~~~~-~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 218 (461)
|+..+.+.++ .++..|+.+++.+- .++.....+...+|...|...+++ .+...+..++..+..+...... ...+.
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999987655 77799999999999 778888999999999999999998 4678899999999999988877 55555
Q ss_pred hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
..++...+..+....+.++.+.+..++..+...
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 566777777777788888888888877776655
No 53
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=5e-08 Score=90.36 Aligned_cols=353 Identities=13% Similarity=0.068 Sum_probs=234.0
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.++.+++.+..+++.|..+|..|+..+.+++ -.+..-...+ +...+-++.. +++ . ..+.++..|-.+..+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-----Dsd-~-~V~~~aeLLdRLikd 154 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-----DSD-Q-NVRGGAELLDRLIKD 154 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-----CCc-c-ccccHHHHHHHHHHH
Confidence 6778899999999999999999999999999 1111112222 5555555554 322 2 345577888888873
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
-..+....+--.+++|.|-.-+..-++.++......+..+-... .....-.-...++.|+.+|+++.+++|..+=.++.
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 11122223333456676666677778888888777776554322 22221122346777888999999999876666565
Q ss_pred HhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH-HHHHHHH
Q 044999 165 ALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW-TTKLVAG 242 (461)
Q Consensus 165 ~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~ 242 (461)
++...-.+.....+ ...++.++.-+.++++.++..|+.-+..+..-.+..-...-+|++..++.++.+..+ .+++.+.
T Consensus 234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 55422112222222 347888899999999999999998888887777765555667788888888886655 3444443
Q ss_pred H---HHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH-----HHHHHHHHhccCCHH
Q 044999 243 N---TLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA-----IAEHLVRILREGDNE 313 (461)
Q Consensus 243 ~---~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----i~~~l~~ll~~~~~~ 313 (461)
. .+..+...+..... ++. .++..+...+.++..+.+..++.-+..+-....++-. +.+.++.-|.+.+++
T Consensus 314 ~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~ 392 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDE 392 (675)
T ss_pred HHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhH
Confidence 2 23334433333333 332 4678888889998899999888777777443333322 228888888999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--Chhh
Q 044999 314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEAD 372 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~ 372 (461)
+...++..+.++|.+++.... ..++..|.++......-+...+.-+++.+|. +++.
T Consensus 393 vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~ 450 (675)
T KOG0212|consen 393 VVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAER 450 (675)
T ss_pred HHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHH
Confidence 999999999999977554422 2245556666666666678888888999988 6553
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.5e-07 Score=90.81 Aligned_cols=272 Identities=14% Similarity=0.144 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999 69 SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL 148 (461)
Q Consensus 69 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll 148 (461)
-++..|+-+|++++. ++-.++ ..|.+.+++++.++.+++.|+.|...+....++.-+.| ++...++|
T Consensus 122 ~vVglAL~alg~i~s--~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL 188 (866)
T KOG1062|consen 122 YVVGLALCALGNICS--PEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLL 188 (866)
T ss_pred eehHHHHHHhhccCC--HHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHH
Confidence 355558788888886 443433 35788899999999999999999998887776665544 55677888
Q ss_pred cCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhhcCch
Q 044999 149 NSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF---------------GSMVSRERACQAIGLLAVTGR 212 (461)
Q Consensus 149 ~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~ 212 (461)
.+.+..+...++..+..+| .+++.-..+-+ .++.++..|+. .+|.+|...++.|+-|-.+++
T Consensus 189 ~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 189 CEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred hhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 8888888889999999999 66766666655 56666666642 257889999999999988877
Q ss_pred h-HHHHHhcCChHHHHHhcccC---CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999 213 A-RRLLVELGVIPGLVELFHIG---DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288 (461)
Q Consensus 213 ~-~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 288 (461)
. .+.|.+ ++..+..-..+. ...+...++.++..+-.+...|..- +..|-+++.+.+..+|..++..|..
T Consensus 267 daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvla-----iniLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 267 DASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLA-----INILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred cHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHH-----HHHHHHHhcCCccceeeeehhhHHh
Confidence 6 444432 222222111111 1233344444444433333333322 5556666666666666666666666
Q ss_pred hccCcccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 289 LAVSEANANAIA-EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 289 l~~~~~~~~~i~-~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
....++...+-- ..++++|++.+..++..|+..+..|... .|...++ ..|+.+|...+++.+...+.-+..++
T Consensus 340 ~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 340 VVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRVMV-----KELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred hhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 655444433322 6677777777777777777777777543 3333333 33777777667777776666666666
Q ss_pred C
Q 044999 368 Y 368 (461)
Q Consensus 368 ~ 368 (461)
.
T Consensus 414 E 414 (866)
T KOG1062|consen 414 E 414 (866)
T ss_pred H
Confidence 6
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-08 Score=89.93 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=152.7
Q ss_pred CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHH
Q 044999 108 QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLV 186 (461)
Q Consensus 108 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~ 186 (461)
+.+.+-+..+..-+..++ ++.++...+...||...++..+++++..+|+.|+++|..++ .++..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 445665777777777888 66788999999999999999999999999999999999999 7888899999999999999
Q ss_pred HHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-ccchhhhhhc
Q 044999 187 EAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VEYITPVAEA 261 (461)
Q Consensus 187 ~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~ 261 (461)
..+.++ +.+++..|+.+++.+..+.+. ...+...++...|...+++ .+...+..++..+..+... ...+..+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999876 558889999999999999887 8888888899999999997 5777888999999998877 4444444445
Q ss_pred CCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 262 GAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
++...+..+..+.+.++++.+..++..+.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 66666777777778888888887766553
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.6e-07 Score=89.03 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=232.8
Q ss_pred HHHhHHHHHHHhhcCC-HHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGS-EALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~-~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
-.+.++.|+.-+.+.. .+-|+.|+++|..++ ...|..+.. +++++++.|+. +-.|++....+..+++.+...+
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~s-rkYR~~Vga~Gmk~li~vL~~----D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFS-RKYREEVGAQGMKPLIQVLQR----DYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHhh----ccCCHHHHHHHHHHHHHHHhcC
Confidence 5677888887777654 678999999999888 223333444 99999999999 8889999999999999999864
Q ss_pred C-------c--------hhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHH-cCCHHHHHHH
Q 044999 86 D-------G--------ALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVAR-NGGLEIVIDL 147 (461)
Q Consensus 86 ~-------~--------~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~-~g~i~~L~~l 147 (461)
+ + ...+.+. ..+.+..++..+...|..||..+...+..+.. ...+.+..+.. ..++..++.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2 1 1223333 34678999999999999999999988885554 56677766654 5689999999
Q ss_pred hcCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCC---C-HHHHHHHHHHHHHhhcCchh-HHHHHhcC
Q 044999 148 LNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFG---S-MVSRERACQAIGLLAVTGRA-RRLLVELG 221 (461)
Q Consensus 148 l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~---~-~~~~~~a~~~L~~l~~~~~~-~~~~~~~~ 221 (461)
|.+..+.+|..++-.|..++.+ +..++.+.-.++..+|+.++... + .-+...|+..|-||-.++.. +..|.+.+
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 9999999999999999999954 45555555578999999999765 2 25788999999999988876 99999999
Q ss_pred ChHHHHHhcc---cCC-----HHHH-----HHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCC--ChhHH
Q 044999 222 VIPGLVELFH---IGD-----WTTK-----LVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGP--DSTGK 279 (461)
Q Consensus 222 ~i~~L~~ll~---~~~-----~~~~-----~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~--~~~~~ 279 (461)
.+|.|.++|. .++ +..+ ..++.+++.+..- ..++..+...+++..|+.++-++ ..+++
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 9999998876 222 1222 2344444444332 22445677788999999988766 56788
Q ss_pred HHHHHHHHHhccCc-ccHHHHH-----------H----HHHHHhccC-CHHHHHHHHHHHHHhh-CCCCchhHH
Q 044999 280 EISEDVFCILAVSE-ANANAIA-----------E----HLVRILREG-DNEANAAAADVLWDLA-GYKHSVPVI 335 (461)
Q Consensus 280 ~~a~~~L~~l~~~~-~~~~~i~-----------~----~l~~ll~~~-~~~~~~~a~~~L~~l~-~~~~~~~~l 335 (461)
..+..+++++...+ .++..++ + .++.+..+. .+..|.++..++..+. .+.+.+..+
T Consensus 335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 88888888885433 3444444 1 222333333 4667777777777665 444444333
No 57
>PF05536 Neurochondrin: Neurochondrin
Probab=99.09 E-value=3.7e-07 Score=89.07 Aligned_cols=421 Identities=14% Similarity=0.085 Sum_probs=256.5
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC-c---hhHHHh--hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA-P---QDILAA--TIPILARLLGENNFSGNLTRSIQQA-AAYCLK 79 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~-~---~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~ 79 (461)
..+.++....++++.++.-|..+...+..+. +.. . ++.+.+ ..+-+-++|+++..|...++..... |+..|.
T Consensus 3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999888888888888888 322 2 223445 6777788888755444434445555 889999
Q ss_pred HHHhcCCchhHHHHHhcCCHHHHHhcCCCCCH-HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH
Q 044999 80 QIASQADGALATEIGQSGVINSVLRLFPQSDD-SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY 158 (461)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 158 (461)
.++. +++....-.--+-+|.|++.+...+. .+...+..++..++ ..++++..+.+.|+++.|++.+.+ .+...+.
T Consensus 83 ~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 83 AFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 9998 55543333233568999999987766 88889999999999 677999999999999999999877 5667889
Q ss_pred HHHHHHHhhCChHHHHHHHh-----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcC----ChHHHH
Q 044999 159 LLEILSALALLREVRRVLIC-----LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELG----VIPGLV 227 (461)
Q Consensus 159 a~~~L~~l~~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~----~i~~L~ 227 (461)
|+.++.+++...... ..-+ ...++.+-..+.......+-..+..|..+-...+. ........ +...+.
T Consensus 159 Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 999999887432211 0101 12345555555555556677788888887665531 11222222 344455
Q ss_pred HhcccC-CHHHHHHHHHHHHHHhcCccchhhhhhc-----CCHHHHHHH---------------hCCCCh-h--------
Q 044999 228 ELFHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEA-----GAIPLYAEL---------------LQGPDS-T-------- 277 (461)
Q Consensus 228 ~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----g~i~~L~~l---------------l~~~~~-~-------- 277 (461)
.++++. .+.-|..++.....+.......-.+... .+.-.++++ .+.+.. .
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~c 317 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASC 317 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHH
Confidence 566543 4555555555555544321110000000 122222222 111111 1
Q ss_pred --HHHHHHHHHHHhccCc------ccHHHHH-------HHHHHHhccC------CHHHHHHHHHHHHHhhCCCCc--hhH
Q 044999 278 --GKEISEDVFCILAVSE------ANANAIA-------EHLVRILREG------DNEANAAAADVLWDLAGYKHS--VPV 334 (461)
Q Consensus 278 --~~~~a~~~L~~l~~~~------~~~~~i~-------~~l~~ll~~~------~~~~~~~a~~~L~~l~~~~~~--~~~ 334 (461)
+.+.....+.+-...+ +...++. ..++.+|+.. ++.....++++|+..-..+.+ ++.
T Consensus 318 f~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~ 397 (543)
T PF05536_consen 318 FSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKE 397 (543)
T ss_pred HHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHH
Confidence 1112222222211111 1111222 5556666432 234666778888877654333 444
Q ss_pred HhhcCCHHHHHHhhcCCC----------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc----cC--CCH----
Q 044999 335 IRNSGAIPILVNLLRGEN----------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL----HD--ESE---- 394 (461)
Q Consensus 335 l~~~g~i~~L~~ll~~~~----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~--~~~---- 394 (461)
+ .|.+|.++.+.+... .+.....+-+|..++..++.++.+..+|+...|.+.+ +. +.+
T Consensus 398 v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~~ 475 (543)
T PF05536_consen 398 V--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAED 475 (543)
T ss_pred H--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchhh
Confidence 4 478999999987432 3467778888999999999999999999977776644 22 111
Q ss_pred ---HHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc
Q 044999 395 ---ELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS 439 (461)
Q Consensus 395 ---~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~ 439 (461)
.--..+|.++.|+........ ....+.+..+++.+.++.++
T Consensus 476 ~~~~~l~~~c~illNl~~~e~~~~----~~~~~~f~~ll~~l~~~~~~ 519 (543)
T PF05536_consen 476 SAEMALVTACGILLNLVVTEPKMD----VEEEATFIELLKALLQWADP 519 (543)
T ss_pred hhHHHHHHHHHHHHHHHhcccccc----cccchHHHHHHHHHHHhcCC
Confidence 134567899999976654331 11456777888888777765
No 58
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.9e-08 Score=82.68 Aligned_cols=268 Identities=17% Similarity=0.174 Sum_probs=188.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 044999 142 EIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI-CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVEL 220 (461)
Q Consensus 142 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 220 (461)
..+++++.+.+|.++..|+..+..++.. ..+.-.. +...++.+.+++....+ .+.|+.++.|++.....++.+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999999865 2222221 23468888888887665 678899999999999887777776
Q ss_pred CChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh-------cCCHHHHHHHhCCC-Ch-hHHHHHHHHHHHhcc
Q 044999 221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE-------AGAIPLYAELLQGP-DS-TGKEISEDVFCILAV 291 (461)
Q Consensus 221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~g~i~~L~~ll~~~-~~-~~~~~a~~~L~~l~~ 291 (461)
.+..++.++.++....-...+..|.|++..++....+.. .|.+.........+ +. .--...+-.++|++.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888888888777888888999999998544333221 34444444444333 22 223445567889999
Q ss_pred CcccHHHHH-------HHHHHHhccCCHHHH-HHHHHHHHHhhCCCCchhHHhhcC--CHHHHH----------------
Q 044999 292 SEANANAIA-------EHLVRILREGDNEAN-AAAADVLWDLAGYKHSVPVIRNSG--AIPILV---------------- 345 (461)
Q Consensus 292 ~~~~~~~i~-------~~l~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~l~~~g--~i~~L~---------------- 345 (461)
....|..+. +.+..+ .+.+..+| ...+++|.|.|.....+..+...+ .+|.++
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~ 240 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAK 240 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhc
Confidence 888887766 222222 33444554 477899999998888877777632 233322
Q ss_pred -----Hhhc-----CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcch
Q 044999 346 -----NLLR-----GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 346 -----~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
+++. .+++.++..-+.+|..||.....|+.+.+.|+-|.+-.+-.. ++++++..+-.....+......+
T Consensus 241 LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~~ 320 (353)
T KOG2973|consen 241 LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPEI 320 (353)
T ss_pred CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 1221 245789999999999999988889999999877766665543 67888887777777776655444
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.4e-08 Score=98.06 Aligned_cols=248 Identities=14% Similarity=0.065 Sum_probs=195.9
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HH
Q 044999 141 LEIVIDLLNS-CNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RR 215 (461)
Q Consensus 141 i~~L~~ll~~-~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~ 215 (461)
+..|+.-|+. .|+..+..|+.-|+.+. .+++.-..|--.-.+|.|+.+|++. +.++...|+++|.+|+..-+. ..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 3445554444 48888888887776654 5566555554456899999999988 789999999999999988877 88
Q ss_pred HHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc--C
Q 044999 216 LLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV--S 292 (461)
Q Consensus 216 ~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~ 292 (461)
.+++.++||.|+.-|. -+.-++-+.++.+|..++.. .-..+.+.|++...+..+.-....+|+.|+.+-.|++. .
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999998666 56778999999999999984 33467788999999999988888999999999999953 2
Q ss_pred cc-cHHHH--HHHHHHHhccCCHHHHHHHHHHHHHhhCC----CCchhHHhhcCCHHHHHHhhcCCC----HHHHHHHHH
Q 044999 293 EA-NANAI--AEHLVRILREGDNEANAAAADVLWDLAGY----KHSVPVIRNSGAIPILVNLLRGEN----DEVREKVSG 361 (461)
Q Consensus 293 ~~-~~~~i--~~~l~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~ll~~~~----~~v~~~a~~ 361 (461)
++ ....+ +|.|..+|...+....+.++-++..++.. ++-.+.++.+|.+....+++.... ..+....++
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 22 22222 29999999999999999999999988843 566788999999999999987543 234556677
Q ss_pred HHHHhcC-ChhhHHHHHhCCChHHHHHhcc
Q 044999 362 AIAQLSY-NEADRVALADAGAVPIMIELLH 390 (461)
Q Consensus 362 ~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~ 390 (461)
.+..++. ++-....+.+.++...|.+++.
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 7888888 6888888888898888888774
No 60
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.7e-07 Score=78.13 Aligned_cols=339 Identities=15% Similarity=0.161 Sum_probs=238.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH----HHHHHcCCHHHHHHHhc
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR----VIVARNGGLEIVIDLLN 149 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~g~i~~L~~ll~ 149 (461)
++.+|-+|.. ..+... ...+..+.|-.-|..++..++..++..+..+..+.+.+. ..++..+..+.++....
T Consensus 63 cVscLERLfk--akegah--lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFK--AKEGAH--LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHh--hccchh--hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 6777777776 222211 123456777788888898888888888887776544222 33457899999999999
Q ss_pred CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH--HHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHH
Q 044999 150 SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL--VEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGL 226 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l--~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L 226 (461)
..+..+...|...+..++..+.....+++......+ ..+-...+.-.|...+..+..+.+..+. ......+|.+..|
T Consensus 139 geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 999999999999999999999998888887655543 3333445667788888888888777665 6677778999888
Q ss_pred HHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHH----HHHHhccCcccHHHH
Q 044999 227 VELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISED----VFCILAVSEANANAI 299 (461)
Q Consensus 227 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~----~L~~l~~~~~~~~~i 299 (461)
..-++. .+.-++..+......|+..+..++.+...|.+..+..++... +|--...+.. .+.+.+..+-..+.+
T Consensus 219 eaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeai 298 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAI 298 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHH
Confidence 887775 677778888888899999899999999999999999998654 3433333333 344444333232322
Q ss_pred H-------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCC--HHHHH-HhhcCCCHHHHHHHHHHHHHhcC-
Q 044999 300 A-------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGA--IPILV-NLLRGENDEVREKVSGAIAQLSY- 368 (461)
Q Consensus 300 ~-------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~--i~~L~-~ll~~~~~~v~~~a~~~L~~l~~- 368 (461)
. +....++...+|+.++.|+.+++.|.++.+..+.+.+.|- .+.++ +........-+..++.+|.+++.
T Consensus 299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 2 6777888899999999999999999999999999888765 33333 33332223345566677777665
Q ss_pred ---Chhh----HH------HHHh-------CCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHH
Q 044999 369 ---NEAD----RV------ALAD-------AGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHER 416 (461)
Q Consensus 369 ---~~~~----~~------~~~~-------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 416 (461)
.++. +. .+.+ ..-.......++.+.++++..+...+..++..|=+.+.
T Consensus 379 lrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalke 446 (524)
T KOG4413|consen 379 LRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKE 446 (524)
T ss_pred ccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHH
Confidence 2211 00 1111 12234455566778999999999999999888755433
No 61
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.06 E-value=2.6e-08 Score=90.24 Aligned_cols=273 Identities=22% Similarity=0.201 Sum_probs=198.6
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHH--HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHH
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDS--FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILS 164 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~ 164 (461)
..++.+...|++..|++++..++.+ ++..+++.+-... ..+++..+...| ...++.+.+.. .++.+...+.+|.
T Consensus 171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 4566788889999999999988755 4778888777554 236788888877 66666666544 4478888999999
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHH
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVA 241 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a 241 (461)
++- ..++....+++.|++..++......++.+.+.++-+|+|++-+... ++.|++..+-+.|+.+..+.+.-.+.+|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 999 6677788999999999999999999999999999999999987765 8889998899999999888888899999
Q ss_pred HHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999 242 GNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADV 321 (461)
Q Consensus 242 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~ 321 (461)
|.+.+.++.+.+....+.+.|.+...-.++.+-+|.--.. --..-++. .-..-.+.|+.+|.+..-+.+..++.-
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--~~~d~LqRLvPlLdS~R~EAq~i~AF~ 402 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--RGPDDLQRLVPLLDSNRLEAQCIGAFY 402 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence 9999999999888888888887766666665555532110 00000000 001111677888887665655544443
Q ss_pred HHHhhC--CCCc-hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 322 LWDLAG--YKHS-VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 322 L~~l~~--~~~~-~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
++.-+. ...+ .+.+.+-|.++.|.++.++++..-...|..+|.-+..
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 333221 2233 3445577999999999998776666666677766654
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.04 E-value=1.2e-07 Score=85.24 Aligned_cols=310 Identities=14% Similarity=0.140 Sum_probs=214.4
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHH------HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999 99 INSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVA------RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE 171 (461)
Q Consensus 99 l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~------~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 171 (461)
+..++.+++..+ ++........+..+...+......+. ....-..++.++...+.-+...+.++++.++..-.
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~ 146 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN 146 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 556677777543 34444455455555544433222222 12235668888989888888888888888873222
Q ss_pred HHHHHHhcC-CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHH
Q 044999 172 VRRVLICLG-GLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGV 247 (461)
Q Consensus 172 ~~~~~~~~~-~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~ 247 (461)
..-...+.. ....+-..+++ .+.+....+.++|..+...++.|..+...+++..++..+. ..+-.++...+.+++.
T Consensus 147 ~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWl 226 (442)
T KOG2759|consen 147 CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWL 226 (442)
T ss_pred ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHH
Confidence 211111111 22334444555 5778889999999999999999999999999999999884 4467889999999999
Q ss_pred HhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc---cH----HHHH----HHHHHHhccC---CH
Q 044999 248 VAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA---NA----NAIA----EHLVRILREG---DN 312 (461)
Q Consensus 248 l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~---~~----~~i~----~~l~~ll~~~---~~ 312 (461)
|+.++...+.+...+.++.|..+++.. ...|-+-++.++.|+....+ .+ ..++ +..++.|... ++
T Consensus 227 LtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE 306 (442)
T KOG2759|consen 227 LTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE 306 (442)
T ss_pred hhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH
Confidence 999988888887779999999999876 56788889999999955442 12 2233 5556666332 34
Q ss_pred HHHHHH-------HHHHHHhhCC---------------C---------CchhHHhhc--CCHHHHHHhhcCCC-HHHHHH
Q 044999 313 EANAAA-------ADVLWDLAGY---------------K---------HSVPVIRNS--GAIPILVNLLRGEN-DEVREK 358 (461)
Q Consensus 313 ~~~~~a-------~~~L~~l~~~---------------~---------~~~~~l~~~--g~i~~L~~ll~~~~-~~v~~~ 358 (461)
++.... -.-...|++. | +|...+-+. ..+..|+.+|...+ |.+..-
T Consensus 307 DL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~V 386 (442)
T KOG2759|consen 307 DLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCV 386 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeeh
Confidence 432211 1111222221 1 233333332 24788999998664 778888
Q ss_pred HHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 359 VSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 359 a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
|+.=++...+ .|+.+..+.+.|+=..+++++++++|+++.+|..++..|.
T Consensus 387 Ac~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 387 ACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred hhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 8888999999 9999999999999999999999999999999999988774
No 63
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.9e-07 Score=86.99 Aligned_cols=381 Identities=18% Similarity=0.124 Sum_probs=240.4
Q ss_pred HHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhH-HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDI-LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~-l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.+..+|.+.+-+++. +..+|.+-...-+.++ +-...+. ....+..+++.+.. ..+++|+....+|..+...
T Consensus 53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~t------ps~~~q~~~~~~l~~~~~~ 126 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDT------PSKSVQRAVSTCLPPLVVL 126 (569)
T ss_pred HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCC------CcHHHHHHHHHHhhhHHHH
Confidence 344556677777765 4455555555566666 4333332 22377888888865 5677999877888887762
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH-HHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY-LLEIL 163 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~-a~~~L 163 (461)
.... ....+.+.+.++++......+..++..+..+.... .-..+.+.+.+..+.+...+.+...+.. +..+.
T Consensus 127 --~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~ 199 (569)
T KOG1242|consen 127 --SKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAF 199 (569)
T ss_pred --hhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHH
Confidence 1111 11234677888888888888899999999888533 3466778888999999888776644443 33332
Q ss_pred HHhh--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999 164 SALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLV 240 (461)
Q Consensus 164 ~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~ 240 (461)
...+ .++..-..++ ..++.++.-..+....+|..+..+...+...-.. .- .-.++.++.-+....+.....
T Consensus 200 ~~~~~~Lg~~~EPyiv--~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~a 273 (569)
T KOG1242|consen 200 EAAQGNLGPPFEPYIV--PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMA 273 (569)
T ss_pred HHHHHhcCCCCCchHH--hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHH
Confidence 2222 1122112222 2356666666666778888877776665433222 10 113444444444447788889
Q ss_pred HHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHH--HHHHHHHHHhccCCHHHHHHH
Q 044999 241 AGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANAN--AIAEHLVRILREGDNEANAAA 318 (461)
Q Consensus 241 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~i~~~l~~ll~~~~~~~~~~a 318 (461)
++..++.++...+.+-...-..++|.+.+.|.+.++++++.+..+|..+...-++.. .++|.+++.+..+.-.+. .+
T Consensus 274 slellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~-e~ 352 (569)
T KOG1242|consen 274 SLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTP-EC 352 (569)
T ss_pred HHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchH-HH
Confidence 999999998886666666677889999999999999999999999999976555544 334899998877653322 23
Q ss_pred HHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C--hhhHHHHHhCCChHHHHHhccCCCHH
Q 044999 319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N--EADRVALADAGAVPIMIELLHDESEE 395 (461)
Q Consensus 319 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~--~~~~~~~~~~~~i~~L~~ll~~~~~~ 395 (461)
...|..=........ -.-.=.+|.|.+-+...+..+++.++.++.|++. - +..-..+.. ..+|.|-..+.+..|+
T Consensus 353 ~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPE 430 (569)
T ss_pred HHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChh
Confidence 333322221111100 0011124555555666677788999999999999 3 222222222 2466666667677999
Q ss_pred HHHHHHHHHHHhcCC
Q 044999 396 LRDNAAESLINFSED 410 (461)
Q Consensus 396 ~~~~a~~~L~~l~~~ 410 (461)
+|..+..+|..+.+.
T Consensus 431 vR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 431 VRAVAARALGALLER 445 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999766544
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.00 E-value=7.5e-07 Score=82.95 Aligned_cols=394 Identities=14% Similarity=0.099 Sum_probs=222.7
Q ss_pred CCCCcHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999 3 NPDTNWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYC 77 (461)
Q Consensus 3 ~~~~~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~ 77 (461)
=|...|.+.++.++.-...+.+ .++..+..++++.+ +..+...+.. ++-.++.--.+ ++.+..++..|+.+
T Consensus 126 lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k----~et~~avRLaaL~a 201 (858)
T COG5215 126 LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALK----NETTSAVRLAALKA 201 (858)
T ss_pred CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcc----cCchHHHHHHHHHH
Confidence 3778899999999998888765 77888999999999 6666555444 44444433333 45556666668888
Q ss_pred HHHHHhcCCchhHHHHH----hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh
Q 044999 78 LKQIASQADGALATEIG----QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND 153 (461)
Q Consensus 78 L~~l~~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 153 (461)
|..=+. ..+..+- .+.+++...+.-..++.+++..+..|+..+..-....-+...+.-........+++++.
T Consensus 202 L~dsl~----fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd 277 (858)
T COG5215 202 LMDSLM----FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND 277 (858)
T ss_pred HHHHHH----HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 877222 1111111 12345666677788899999999999987765444444444454445555667889999
Q ss_pred HHHHHHHHHHHHhhCCh-HHHHHHH----------------hcCCHHHHHHHHcCC-------CHHH-------------
Q 044999 154 GTRRYLLEILSALALLR-EVRRVLI----------------CLGGLRYLVEAVSFG-------SMVS------------- 196 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~-~~~~~~~----------------~~~~l~~l~~~l~~~-------~~~~------------- 196 (461)
++...|++....+|..+ +..-... -.+++|.++.+|... ++.+
T Consensus 278 ~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq 357 (858)
T COG5215 278 EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ 357 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH
Confidence 99999999988887322 1111111 123688888888652 1222
Q ss_pred -------------------------HHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 197 -------------------------RERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 197 -------------------------~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
|+.+..+++.+...+.. +..-.-...+|.+..++.++.--++..++++++.++.
T Consensus 358 ~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 358 LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred HhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH
Confidence 33444444444433332 2221223467777777777777788899999999987
Q ss_pred C-ccchhhhhhcCCHHH-----HHHHhCCCChhHHHHHHHHHHHhccCcc------------------------------
Q 044999 251 H-VEYITPVAEAGAIPL-----YAELLQGPDSTGKEISEDVFCILAVSEA------------------------------ 294 (461)
Q Consensus 251 ~-~~~~~~~~~~g~i~~-----L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------------------ 294 (461)
+ +..-. ..|-++. ++.+. ++|.+..++.+...||+.+-.
T Consensus 438 ~va~~i~---p~~Hl~~~vsa~liGl~--D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~N 512 (858)
T COG5215 438 HVAMIIS---PCGHLVLEVSASLIGLM--DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALN 512 (858)
T ss_pred HHHHhcC---ccccccHHHHHHHhhhh--ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhcc
Confidence 6 22111 1111111 11111 233444444444444422110
Q ss_pred ---------------------cHHHHH-----------HH----HHHHhccC----CHHHHHHHHHHHHHhhCC-CCchh
Q 044999 295 ---------------------NANAIA-----------EH----LVRILREG----DNEANAAAADVLWDLAGY-KHSVP 333 (461)
Q Consensus 295 ---------------------~~~~i~-----------~~----l~~ll~~~----~~~~~~~a~~~L~~l~~~-~~~~~ 333 (461)
.-..+. +. +-+.+... .++++.+-+..|..+.+. +...+
T Consensus 513 e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie 592 (858)
T COG5215 513 ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE 592 (858)
T ss_pred chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 000000 00 00111111 123334444444444321 11111
Q ss_pred HHhhcCCHHHHHHhhcCCCHH-HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 334 VIRNSGAIPILVNLLRGENDE-VREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 334 ~l~~~g~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
. ++...+..+++++.+.++. +-..+..++.+|+.+-+-+..-.-...+|.|.+-++..+..+...+...+..|+..
T Consensus 593 ~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 593 D-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred c-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 1 1222455667777766443 44566777888887444444444556789999989888888888888888887654
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.5e-07 Score=80.92 Aligned_cols=265 Identities=17% Similarity=0.211 Sum_probs=192.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH-hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE 260 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 260 (461)
...+++++.+.++.++..|...+..++.. ..+.... +...++.+.+++....+ .+.|+.+|.|++..+..++.+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 34588999999999999999999999877 3333222 24467888888887666 67788899999999988988887
Q ss_pred cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------HHHHHHhc----cC-C-HHHHHHHHHHHHHhh
Q 044999 261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA--------EHLVRILR----EG-D-NEANAAAADVLWDLA 326 (461)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------~~l~~ll~----~~-~-~~~~~~a~~~L~~l~ 326 (461)
. ++..++..+.++....-...+..|.|++..++....+. ..+.++.+ .+ + ..--.+.+-++.|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 7 77788888888878888899999999999887766554 23333332 11 2 123356778899999
Q ss_pred CCCCchhHHhhcCCHH--HHHHhhcCCCHHHHH-HHHHHHHHhcCChhhHHHHHhCC--ChH------------------
Q 044999 327 GYKHSVPVIRNSGAIP--ILVNLLRGENDEVRE-KVSGAIAQLSYNEADRVALADAG--AVP------------------ 383 (461)
Q Consensus 327 ~~~~~~~~l~~~g~i~--~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~i~------------------ 383 (461)
..+..+..+.....++ .+..+-. .+..+|. ..+.+|.|+|.+..++..+.+.+ .+|
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 9999999888766433 3444434 4445554 67789999999777777766532 122
Q ss_pred ---HHHHhc-----cCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999 384 ---IMIELL-----HDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL 455 (461)
Q Consensus 384 ---~L~~ll-----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
.=++++ +.+++.++..-..+|..|+....+|+.++.-|+-+.++ .++++- .++.++++....+..+
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilR----Elhk~e--~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILR----ELHKWE--EDEDIREACEQVVQML 313 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHH----HHhcCC--CcHHHHHHHHHHHHHH
Confidence 222444 23689999999999999999999999998877766655 455565 4777877777766665
Q ss_pred cc
Q 044999 456 TW 457 (461)
Q Consensus 456 ~~ 457 (461)
..
T Consensus 314 v~ 315 (353)
T KOG2973|consen 314 VR 315 (353)
T ss_pred Hh
Confidence 54
No 66
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.95 E-value=2e-06 Score=82.53 Aligned_cols=372 Identities=13% Similarity=0.116 Sum_probs=200.6
Q ss_pred cCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCchhHHHHHhcCC
Q 044999 21 SGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADGALATEIGQSGV 98 (461)
Q Consensus 21 ~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~ 98 (461)
+.|+.||...+++++..+ .. .++.++-+|+. +-++.....-++ +..+..+++. -..+.....-.+.
T Consensus 487 n~deYVRnttarafavva--------salgip~llpfLka--vc~SkkSwqaRhTgIkivqqIai--l~Gcsvlphl~~l 554 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVA--------SALGIPALLPFLKA--VCGSKKSWQARHTGIKIVQQIAI--LSGCSVLPHLKPL 554 (1172)
T ss_pred cccHHHHHHHHHHHHHHH--------HHhCcHHHHHHHHH--HhccccchhhhchhhHHHHHHHH--HhcchhhhhhHHH
Confidence 467788888888777666 11 33443333332 002221222333 7777777776 3333322222334
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh----cCCChHHHHHHHHHHHHhh-CChHHH
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL----NSCNDGTRRYLLEILSALA-LLREVR 173 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~-~~~~~~ 173 (461)
+..+-..+.+....++..++.++..++.......- +.++.+++.| +.........-+.++..++ ..+..-
T Consensus 555 v~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi-----e~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~ey 629 (1172)
T KOG0213|consen 555 VKIIEHGLKDEQQKVRTITALALSALAEAATPYGI-----EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEY 629 (1172)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHH
Confidence 55555667778888899999999888763322211 1122333332 2222233344445666666 222222
Q ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-----------------------
Q 044999 174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF----------------------- 230 (461)
Q Consensus 174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----------------------- 230 (461)
.......++..+.+-..+++++.+...+..+..++..............++.++..+
T Consensus 630 a~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia 709 (1172)
T KOG0213|consen 630 ASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA 709 (1172)
T ss_pred HHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH
Confidence 222333456667777778888888888888888877664422222333344443333
Q ss_pred ----------------ccCCHHHHHHHHHHHHHHhcC---ccchhhhhhcCCHHHHHHHhCCCC--hhHHHHHHHHHHHh
Q 044999 231 ----------------HIGDWTTKLVAGNTLGVVAAH---VEYITPVAEAGAIPLYAELLQGPD--STGKEISEDVFCIL 289 (461)
Q Consensus 231 ----------------~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l 289 (461)
+++.+..+...+.++..+... .+.-.. .+...+..++..++..+ ..+......+..|-
T Consensus 710 ~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider-leE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 710 AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER-LEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH-HHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 233333333333333322211 000000 01111233333333221 12222222222221
Q ss_pred --ccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc---hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999 290 --AVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS---VPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364 (461)
Q Consensus 290 --~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 364 (461)
......-.++...++..|++.++.+|..|+..+..++..-.. -+.+...| -.|.+.+....|++.-..+.++.
T Consensus 789 lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAik 866 (1172)
T KOG0213|consen 789 LGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIK 866 (1172)
T ss_pred HhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHH
Confidence 111223334447777888999999999999999999853222 22233333 34788999889998887777777
Q ss_pred HhcCChhhH-HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 365 QLSYNEADR-VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 365 ~l~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
.+....+.. ..---.+.+|.|.-+|++.+..++.++...+..++....
T Consensus 867 aI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 867 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred HHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 766522111 111124679999999999999999999999999986653
No 67
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.93 E-value=7.6e-06 Score=76.49 Aligned_cols=392 Identities=11% Similarity=0.002 Sum_probs=239.2
Q ss_pred cHHHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCCch-hHHH-----------hhH-HHHHHhhccCCCCCCCcHH
Q 044999 7 NWEEAFNRFEQAVVS--GSEALQVKALTKLARVS--KFAPQ-DILA-----------ATI-PILARLLGENNFSGNLTRS 69 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~~~-~~l~-----------~~i-~~l~~~l~~~~~~~~~~~~ 69 (461)
+.++.+-.+.+.+-+ ..+..|..|..+|.|-. ++..+ .... +-+ ...++.|.+ ..|.
T Consensus 36 dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s------~epr 109 (858)
T COG5215 36 DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKS------PEPR 109 (858)
T ss_pred cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC------CccH
Confidence 455555555555554 35788888888887755 32222 1221 122 234566765 3344
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCH-HHHHHHHHHHHHHhccChhhHHHHHHcC-CHHHHHH-
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDD-SFRTVLVKCLRVFVTFGNENRVIVARNG-GLEIVID- 146 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~g-~i~~L~~- 146 (461)
.-..|+..+..++...-+... =.|....+++..-.+.| ..+..+...+.+.+.+... ...+..++ ++..++.
T Consensus 110 ~~~~Aaql~aaIA~~Elp~~~----wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~g 184 (858)
T COG5215 110 FCTMAAQLLAAIARMELPNSL----WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMG 184 (858)
T ss_pred HHHHHHHHHHHHHHhhCcccc----chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHh
Confidence 444588899998874111000 01223444444444444 3455666677777754322 33333332 2333333
Q ss_pred HhcC-CChHHHHHHHHHHHHhh-CChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCC
Q 044999 147 LLNS-CNDGTRRYLLEILSALA-LLREVRRVLI-CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR-ARRLLVELGV 222 (461)
Q Consensus 147 ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~ 222 (461)
.+++ .+..+|..|+.+|.+-+ .-..+-..-. ..-+++..++.-+.++.+++..+..|+..+..-.- ......+...
T Consensus 185 a~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 185 ALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 35588999999998733 2111111111 11256667778888899999999999998865443 3445556556
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cch--------------hhh--hhcCCHHHHHHHhCCC-------ChhH
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYI--------------TPV--AEAGAIPLYAELLQGP-------DSTG 278 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~--------------~~~--~~~g~i~~L~~ll~~~-------~~~~ 278 (461)
.......+++++.++...++.....++..+ +.. ... .-..++|.|+++|... ++.+
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 677777888999999999888887776541 100 000 0123688899998642 4567
Q ss_pred HHHHHHHHHHhccCcccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC-CchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999 279 KEISEDVFCILAVSEANA--NAIAEHLVRILREGDNEANAAAADVLWDLAGYK-HSVPVIRNSGAIPILVNLLRGENDEV 355 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~~~~--~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~~~~~v 355 (461)
...|..+|.-++....+. .-+...+-+-++++++.-++.|+.+++.+-..| +....-.-+..+|.+...+.++.-.+
T Consensus 345 smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v 424 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV 424 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence 777777777766543221 112255556678889999999999999998654 22333334578999999999888899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCCC
Q 044999 356 REKVSGAIAQLSYNEADRVALADAGAVPIMIELL---HDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 356 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
+..++|+++.++. .....+-..|-++..++.. -.++|.+..+++|...|+..+-
T Consensus 425 k~ttAwc~g~iad--~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 425 KSTTAWCFGAIAD--HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred hhHHHHHHHHHHH--HHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 9999999999985 2233444445455444432 2368888999999999997653
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.93 E-value=1.4e-07 Score=85.60 Aligned_cols=266 Identities=15% Similarity=0.126 Sum_probs=194.1
Q ss_pred HHHhHHHHHHHhhcCCH--HHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSE--ALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~--~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
....+..++.++.+.+. .||..|++.|..+...++++.+.+ .+..++.+-+ ..+.++.++..+..|.++...
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-----~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-----EREPVELARSVAGILEHMFKH 252 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-----hcCcHHHHHHHHHHHHHHhhh
Confidence 34567888888888765 559999999988887777777777 7777777665 445677888899999999997
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL 163 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 163 (461)
.++.+..++..|++..++-.++..+|.+.+.++.++.|.+. ...+.+..+++..+.+.|+-+..+.|+-.|..||-+.
T Consensus 253 -Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 253 -SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred -hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 67777788899999999999999999999999999997665 4557788899998999999998888999999999999
Q ss_pred HHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999 164 SALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243 (461)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 243 (461)
+.++.+.+....+-..|.+..+-.++.+-++.- ++.+......=....-++.|+.+|++...+.+..++-
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF 401 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAF 401 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHH
Confidence 999999999888888887766656665555421 1111111000011235788899998766665554432
Q ss_pred HHHHHh--cCccchhhh-hhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 244 TLGVVA--AHVEYITPV-AEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 244 ~L~~l~--~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
-++.=+ ....++..+ -+-|.|..|-++..+++......|..+|.-+
T Consensus 402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 222111 113444444 4559999999998877766666666666655
No 69
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.3e-06 Score=80.53 Aligned_cols=374 Identities=14% Similarity=0.124 Sum_probs=222.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999 13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE 92 (461)
Q Consensus 13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 92 (461)
+.+-+-|++.+..++-.|..+|++++++ +..+...|.+-++++. .++-+++-|+.|..++... .++..+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe~Ll~~------~~~~irKKA~Lca~r~irK-~P~l~e- 178 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVERLLQH------RDPYIRKKAALCAVRFIRK-VPDLVE- 178 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHHHHHhC------CCHHHHHHHHHHHHHHHHc-CchHHH-
Confidence 4455566778888888899999999832 2223367788888886 5567888899999999985 333322
Q ss_pred HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC---------------CChHHHH
Q 044999 93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS---------------CNDGTRR 157 (461)
Q Consensus 93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~~~~ 157 (461)
.+++...++|.+.++.|-..+...+..++..+++.-..+.+ .++.|+..|+. ++|-++.
T Consensus 179 ----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 179 ----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred ----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 24566778888888887777777777888877666666655 45555554431 3567788
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhc--------------C------CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HH
Q 044999 158 YLLEILSALAL-LREVRRVLICL--------------G------GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RR 215 (461)
Q Consensus 158 ~a~~~L~~l~~-~~~~~~~~~~~--------------~------~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~ 215 (461)
..++.|.-+.. +.+..+.+-+- | ++.++..+ ..+..+|..|+.+|+.+..+++. -+
T Consensus 253 ~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 253 RILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCcccee
Confidence 88877777773 33332222110 1 12222211 22456777777777777666654 32
Q ss_pred HHHh----------cC----ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHH
Q 044999 216 LLVE----------LG----VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEI 281 (461)
Q Consensus 216 ~~~~----------~~----~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 281 (461)
++.= .. -=..+++++++++..+++.|+..+..|......+ .+ +..|+..|.+.+++.+..
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~-~m-----v~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR-VM-----VKELLEFLESSDEDFKAD 404 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH-HH-----HHHHHHHHHhccHHHHHH
Confidence 2210 11 1246778888999999999998888877654433 33 678888888889999988
Q ss_pred HHHHHHHhc--cCcccHHHHH------------------HHHHHHhccCCHH-------------------------HHH
Q 044999 282 SEDVFCILA--VSEANANAIA------------------EHLVRILREGDNE-------------------------ANA 316 (461)
Q Consensus 282 a~~~L~~l~--~~~~~~~~i~------------------~~l~~ll~~~~~~-------------------------~~~ 316 (461)
.+.-+..++ ..|+.++.+- ..++.++.+..++ ...
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q 484 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ 484 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 888888874 4555555443 4455555444111 223
Q ss_pred HHHHHHHHhhC---CC---CchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHH
Q 044999 317 AAADVLWDLAG---YK---HSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIE 387 (461)
Q Consensus 317 ~a~~~L~~l~~---~~---~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ 387 (461)
-+.|+|+.-.. +. +.-..+-+..++..|.+++.+ .+..++..++.++..|+. ......+ +..|+.
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~r------i~~lI~ 558 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSER------IKQLIS 558 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHH------HHHHHH
Confidence 34444443321 11 111112233455666666553 346677778888887776 3322111 223332
Q ss_pred -hccCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999 388 -LLHDESEELRDNAAESLINFSEDPLQHERI 417 (461)
Q Consensus 388 -ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 417 (461)
+-.+.+-++|+.+.+.=.-+..+..-++.+
T Consensus 559 ~~~~s~~~elQQRa~E~~~l~~~~~~lr~si 589 (866)
T KOG1062|consen 559 SYKSSLDTELQQRAVEYNALFAKDKHLRKSI 589 (866)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234567777777776444444444444444
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.2e-06 Score=81.19 Aligned_cols=359 Identities=14% Similarity=0.071 Sum_probs=229.5
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
.....++.+..-++...+.+++....++..+. ..... ......+.+.+++.. .+...+..++..+..+..+
T Consensus 93 ~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-~~~~~l~~l~~ll~~------~~~~~~~~aa~~~ag~v~g- 164 (569)
T KOG1242|consen 93 RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-SGEYVLELLLELLTS------TKIAERAGAAYGLAGLVNG- 164 (569)
T ss_pred chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-CHHHHHHHHHHHhcc------ccHHHHhhhhHHHHHHHcC-
Confidence 34456677777788888888888888887766 22111 111245556666654 4455677788999988863
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHH-HHHHHHHHhccChhhHHHHHHcCC---HHHHHHHhcCCChHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTV-LVKCLRVFVTFGNENRVIVARNGG---LEIVIDLLNSCNDGTRRYLLE 161 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~g~---i~~L~~ll~~~~~~~~~~a~~ 161 (461)
-....+.+.+++..+.+...+......+. +..+.......- ....+.+. ++.++.-.++..+.+|..|..
T Consensus 165 --~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L----g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~ 238 (569)
T KOG1242|consen 165 --LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL----GPPFEPYIVPILPSILTNFGDKINKVREAAVE 238 (569)
T ss_pred --cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc----CCCCCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence 23345556778888888888766554443 222222222111 01122233 444444455667788888877
Q ss_pred HHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHH
Q 044999 162 ILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKL 239 (461)
Q Consensus 162 ~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 239 (461)
+...+.. +....+. .++.++.-+....+..+..++..++.++...+.+-...-..++|.+.+.|.+..++++.
T Consensus 239 a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~ 313 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRK 313 (569)
T ss_pred HHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHH
Confidence 7665541 1111111 34444444444477888899999999999988877777788999999999999999999
Q ss_pred HHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc----cCcccHHHHHHHHHHHhccCCHHHH
Q 044999 240 VAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA----VSEANANAIAEHLVRILREGDNEAN 315 (461)
Q Consensus 240 ~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~----~~~~~~~~i~~~l~~ll~~~~~~~~ 315 (461)
.+..++..++.-.++.. + ...+|.|++.+.++...+.+ +...|..-+ ..+.....++|.|-+-+...+...+
T Consensus 314 a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 314 AGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhh
Confidence 99999999987644433 1 23478899988877544433 333332221 1223344444777777877788888
Q ss_pred HHHHHHHHHhhCCCCchhHHh--hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC
Q 044999 316 AAAADVLWDLAGYKHSVPVIR--NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD 391 (461)
Q Consensus 316 ~~a~~~L~~l~~~~~~~~~l~--~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~ 391 (461)
+.++.++.|++.--+....+. -...+|.|-..+.+..|++|..+.++|+.+-+..+.+.. .+.+|.+.+.+++
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTS 464 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhcc
Confidence 999999999996533333332 223566677777778899999999999888763332222 4456666666643
No 71
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.87 E-value=1.4e-06 Score=83.57 Aligned_cols=384 Identities=12% Similarity=0.068 Sum_probs=229.9
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
....++.+-+.+.++...+|..++.+++.++ .+-.-.++-.++.+|-+-++.+ ... ....-+.++..|+-.
T Consensus 551 l~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~h---rgk---~laafLkAigylipl 624 (1172)
T KOG0213|consen 551 LKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQH---RGK---ELAAFLKAIGYLIPL 624 (1172)
T ss_pred hHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHc---cCh---HHHHHHHHHhhcccc
Confidence 3445666777777888999999999999999 3333444444777776666540 111 222233344444432
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH----
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL---- 160 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~---- 160 (461)
.+. -....+...++-.+.+-..++|.+.++...+.+...+..+ ...........++-++...- .++.|.
T Consensus 625 md~-eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp~ff~~fw-----~rrmA~drr~ 697 (1172)
T KOG0213|consen 625 MDA-EYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILPEFFFSFW-----GRRMALDRRN 697 (1172)
T ss_pred ccH-HHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhHHHHhhhh-----hhhhhccccc
Confidence 122 2223334445667778888999998888888877766433 33444555555665555321 111111
Q ss_pred -HHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCC--H
Q 044999 161 -EILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGD--W 235 (461)
Q Consensus 161 -~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~--~ 235 (461)
+.+...+ .+...++.....+..++.=+.++++..|...+.++.++...-.. -..-.+...+..++-.++.++ .
T Consensus 698 ykqlv~tt--v~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d 775 (1172)
T KOG0213|consen 698 YKQLVDTT--VEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED 775 (1172)
T ss_pred hhhHHHHH--HHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch
Confidence 0110000 11122222333566667777788888888888777665433221 111122234555555565332 2
Q ss_pred HHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH---HHHH---HHHHHHh
Q 044999 236 TTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA---NAIA---EHLVRIL 307 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~---~~l~~ll 307 (461)
.+......++.+--.. ...-. .++..++..|++.++.+|..|+..+..++..-..+ +.+. -.|...|
T Consensus 776 ~vml~gfg~V~~~lg~r~kpylp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl 850 (1172)
T KOG0213|consen 776 SVMLLGFGTVVNALGGRVKPYLP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL 850 (1172)
T ss_pred hhhhhhHHHHHHHHhhccccchH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc
Confidence 3333444444432211 22222 33677888899999999999999999886443333 2222 7777888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCC-chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh---hHHHHHhCCCh
Q 044999 308 REGDNEANAAAADVLWDLAGYKH-SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA---DRVALADAGAV 382 (461)
Q Consensus 308 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~---~~~~~~~~~~i 382 (461)
....|++.-..++++..++.... .+..---.+.+|.|..+|++.+..+++..+..++.++. .++ .|+.+.- -
T Consensus 851 geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---c 927 (1172)
T KOG0213|consen 851 GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---C 927 (1172)
T ss_pred CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---H
Confidence 88899988777777766663211 11111124789999999999999999999999999998 544 3444432 3
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcCCCcch
Q 044999 383 PIMIELLHDESEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 383 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
-.|+++|.+.+.++|.+|...+.-++..=...
T Consensus 928 feLlelLkahkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 928 FELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence 45778888889999999999888887654433
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=9.8e-06 Score=77.77 Aligned_cols=406 Identities=14% Similarity=0.082 Sum_probs=224.5
Q ss_pred CCCCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 2 GNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 2 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
++||-.. +.-+.++.++++.-+.+|..|...+..+. ....+.++-++|.|.+-|.. +||.+|..|+..+|.|
T Consensus 137 vTpdLAR-DLa~Dv~tLL~sskpYvRKkAIl~lykvF-LkYPeAlr~~FprL~EkLeD------pDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 137 VTPDLAR-DLADDVFTLLNSSKPYVRKKAILLLYKVF-LKYPEALRPCFPRLVEKLED------PDPSVVSAAVSVICEL 208 (877)
T ss_pred cCchhhH-HHHHHHHHHHhcCchHHHHHHHHHHHHHH-HhhhHhHhhhHHHHHHhccC------CCchHHHHHHHHHHHH
Confidence 3455333 23367888999999999999999988887 11123344588999988864 7889999999999999
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHH
Q 044999 82 ASQADGALATEIGQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYL 159 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a 159 (461)
+.. ++.+.-. .-|.+.++|.+.+ .=+.....+.+..|+.-.|.....+ ++.+.+++.+... .+...+
T Consensus 209 ArK-nPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~sT~AmSLlYEC 277 (877)
T KOG1059|consen 209 ARK-NPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMESTVAMSLLYEC 277 (877)
T ss_pred Hhh-CCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHhhHHHHHHHHH
Confidence 987 4433222 2466777776432 2235556666667776555444443 5567777766543 333334
Q ss_pred HHHHHH--hh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999 160 LEILSA--LA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW 235 (461)
Q Consensus 160 ~~~L~~--l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~ 235 (461)
+.++.. ++ ..+++-..+. -+++.|-.++.+.|+.+++.++-+++.+...++. ... .-+.++.+|.+.++
T Consensus 278 vNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~ 350 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDE 350 (877)
T ss_pred HHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCc
Confidence 333322 22 2222211111 1577788888999999999999999999877665 221 24678889999999
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhc
Q 044999 236 TTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAIA------EHLVRILR 308 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~ 308 (461)
.++..|+..|..+...... ..+ +..|..-+... ....+...+.-+..++..... ..+. ..++++.+
T Consensus 351 SIRlrALdLl~gmVskkNl-~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY-~~ItdFEWYlsVlveLa~ 423 (877)
T KOG1059|consen 351 SIRLRALDLLYGMVSKKNL-MEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY-QYITDFEWYLSVLVELAR 423 (877)
T ss_pred hhHHHHHHHHHHHhhhhhH-HHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHh
Confidence 9999999998887654322 222 44555444333 223443333322222221111 1111 34444433
Q ss_pred cCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCChhhHHHH
Q 044999 309 EGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRG-----------ENDEVREKVSGAIAQLSYNEADRVAL 376 (461)
Q Consensus 309 ~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~ 376 (461)
-...+.-......+.+++ +.+..++..+. ....++.+ .-.+|..+|+|+++-.+..-++....
T Consensus 424 l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~-----~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~ 498 (877)
T KOG1059|consen 424 LEGTRHGSLIAEQIIDVAIRVPSIRPFSVS-----QMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDT 498 (877)
T ss_pred ccccchhhHHHHHHHHHheechhhhHhHHH-----HHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHH
Confidence 222222222333344444 23333333322 12222221 12567788889998887633333222
Q ss_pred HhCCChHHHHHh----ccCC-CHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchH-HhHHHHHHHhhhchhHHHHHHHHH
Q 044999 377 ADAGAVPIMIEL----LHDE-SEELRDNAAESLINFSEDPLQHERISEAIGIPSF-QSMQSRLTRIRASDDLMARSMRRM 450 (461)
Q Consensus 377 ~~~~~i~~L~~l----l~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~ 450 (461)
+..+.+- +... ..-..+++....++++...+.-. +..|+-.+ ..++..+.++.-+.+..+++.|.-
T Consensus 499 -----leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~---~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~ 570 (877)
T KOG1059|consen 499 -----LEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK---DFEGIVSLVNLILSFLEQFSGSSDLEVQERASE 570 (877)
T ss_pred -----HHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc---chhHHHHHHHHHHHHhhcccCccchhHHHHHHH
Confidence 2222221 1111 12234556666777765544322 12233333 335555566666677778877655
Q ss_pred hHh
Q 044999 451 SIE 453 (461)
Q Consensus 451 ~~~ 453 (461)
+..
T Consensus 571 ~~~ 573 (877)
T KOG1059|consen 571 VLE 573 (877)
T ss_pred HHH
Confidence 444
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=7.5e-07 Score=86.19 Aligned_cols=370 Identities=16% Similarity=0.146 Sum_probs=219.8
Q ss_pred CCCCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 2 GNPDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 2 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
+.|+ .-..+++.+.+-..++++.+|..|.+..+.+- ...........+.+.++. +++-+++.++.+...+
T Consensus 79 ~~P~-~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d------~~~yvRktaa~~vakl 148 (734)
T KOG1061|consen 79 GKPD-LAILAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKD------DDPYVRKTAAVCVAKL 148 (734)
T ss_pred cCch-HHHhhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccC------CChhHHHHHHHHHHHh
Confidence 4454 34456677777777888888888877777665 111222278888899986 5677888888888887
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Q 044999 82 ASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLE 161 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~ 161 (461)
-.. ..+...+.|.++.|..++.+.++.|...|..++..+...++...........+..++..+...++--+...+.
T Consensus 149 ~~~----~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~ 224 (734)
T KOG1061|consen 149 FDI----DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILD 224 (734)
T ss_pred hcC----ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 764 2345668899999999999999999999999999887655432111222223444555555544444444444
Q ss_pred HHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999 162 ILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLV 240 (461)
Q Consensus 162 ~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 240 (461)
.+.+-. .++..... .+..+...+.+.+..+...+...+.++...........-....+.++.++.+.. +.+..
T Consensus 225 ~l~~y~p~d~~ea~~-----i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyv 298 (734)
T KOG1061|consen 225 CLAEYVPKDSREAED-----ICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYV 298 (734)
T ss_pred HHHhcCCCCchhHHH-----HHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHH
Confidence 444444 22212222 466778888888888888888888888766665333333446778888888776 66666
Q ss_pred HHHHHHHHhcCccchhhhhhcCCHHHHHHH--hCCCCh-hHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHH
Q 044999 241 AGNTLGVVAAHVEYITPVAEAGAIPLYAEL--LQGPDS-TGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAA 317 (461)
Q Consensus 241 a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l--l~~~~~-~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~ 317 (461)
++.-+.-+-.. +..+ ...-+.. .+..+| .++..=+.++..++... +-.++...+...-...+.+....
T Consensus 299 aLrNi~lil~~---~p~~-----~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~-nl~qvl~El~eYatevD~~fvrk 369 (734)
T KOG1061|consen 299 ALRNINLILQK---RPEI-----LKVEIKVFFCKYNDPIYVKLEKLEILIELANDA-NLAQVLAELKEYATEVDVDFVRK 369 (734)
T ss_pred HHhhHHHHHHh---ChHH-----HHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh-HHHHHHHHHHHhhhhhCHHHHHH
Confidence 43333322221 1111 1111111 122232 34444445555554332 22223344444445557788888
Q ss_pred HHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHH
Q 044999 318 AADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEE 395 (461)
Q Consensus 318 a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~ 395 (461)
+++++++++.--+.. .+.+..|++++..+-..+...+...+..+-+ .|..-+.+ ++.+..-+.+ .+|+
T Consensus 370 aIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~epe 439 (734)
T KOG1061|consen 370 AVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQEPE 439 (734)
T ss_pred HHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccCChH
Confidence 888998888532221 5678888888887666666666677777776 55533222 2223333322 4566
Q ss_pred HHHHHHHHHHHhcCC
Q 044999 396 LRDNAAESLINFSED 410 (461)
Q Consensus 396 ~~~~a~~~L~~l~~~ 410 (461)
.+..-.|.+..-+..
T Consensus 440 ak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 440 AKAALIWILGEYAER 454 (734)
T ss_pred HHHHHHHHHhhhhhc
Confidence 666666655554433
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.80 E-value=1.7e-05 Score=77.73 Aligned_cols=401 Identities=12% Similarity=0.118 Sum_probs=235.8
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCc--hhHHHHHhcCCHHHHHhcCCCC-------CHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADG--ALATEIGQSGVINSVLRLFPQS-------DDSFRTVLV 118 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~--~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~~~ 118 (461)
.+...+++|+. ..| .++- +...+.++...++. ..++.+++.=+.+.+-++|+++ ....+..+.
T Consensus 6 ~l~~c~~lL~~----~~D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 6 SLEKCLSLLKS----ADD---TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHHHhcc----CCc---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 57788899986 433 6666 66777777774232 2344577776778888998873 234455556
Q ss_pred HHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHH
Q 044999 119 KCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSR 197 (461)
Q Consensus 119 ~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 197 (461)
..+..++. +++....-.-.+-+|.|++.+.+.+. .+...++.+|..++.+++.++.+++.|+++.|++.+.+ .+...
T Consensus 79 svL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~ 156 (543)
T PF05536_consen 79 SVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQM 156 (543)
T ss_pred HHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence 55667775 44544222233459999999987777 89999999999999999999999999999999999987 55668
Q ss_pred HHHHHHHHHhhcCchhHHHHHh----cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc--hhhhhhcC----CHHHH
Q 044999 198 ERACQAIGLLAVTGRARRLLVE----LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY--ITPVAEAG----AIPLY 267 (461)
Q Consensus 198 ~~a~~~L~~l~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g----~i~~L 267 (461)
..++.++.++.........--. ...++.+-..+.......+-..+..|..+-...+. ........ +...+
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl 236 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL 236 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence 8888888888765442110011 12345555555555555666677777777655321 11122222 33445
Q ss_pred HHHhCCC-ChhHHHHHHHHHHHhcc--------Cccc--HHHH----H-----------HHHHHHhccCC-HH-------
Q 044999 268 AELLQGP-DSTGKEISEDVFCILAV--------SEAN--ANAI----A-----------EHLVRILREGD-NE------- 313 (461)
Q Consensus 268 ~~ll~~~-~~~~~~~a~~~L~~l~~--------~~~~--~~~i----~-----------~~l~~ll~~~~-~~------- 313 (461)
..++++. .+.-|..++.....|.. .+.. ...+ + +.++...+.+. +.
T Consensus 237 ~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~ 316 (543)
T PF05536_consen 237 RDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLAS 316 (543)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHH
Confidence 6666665 56666666655555421 1111 0111 1 22222222221 11
Q ss_pred ---HHHHHHHHHHHhhCCC------CchhHHh--hcCCHHHHHHhhcCC------CHHHHHHHHHHHHHhcC-Chh-hHH
Q 044999 314 ---ANAAAADVLWDLAGYK------HSVPVIR--NSGAIPILVNLLRGE------NDEVREKVSGAIAQLSY-NEA-DRV 374 (461)
Q Consensus 314 ---~~~~a~~~L~~l~~~~------~~~~~l~--~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~-~~~-~~~ 374 (461)
+.+..+..+.+-...+ +....+. -.+.+...+++|++- ++.....+.++|+..-. ++. .++
T Consensus 317 cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~ 396 (543)
T PF05536_consen 317 CFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRK 396 (543)
T ss_pred HHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHH
Confidence 2223333333322111 1111111 123456666777532 22355567777776555 443 455
Q ss_pred HHHhCCChHHHHHhccCC----------CHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc-h---
Q 044999 375 ALADAGAVPIMIELLHDE----------SEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS-D--- 440 (461)
Q Consensus 375 ~~~~~~~i~~L~~ll~~~----------~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~-~--- 440 (461)
.+. |.+|.++++.+.. ..+.+....-+|..++..+++++.+...+|-..+..-+-...+.... .
T Consensus 397 ~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~~ 474 (543)
T PF05536_consen 397 EVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDAE 474 (543)
T ss_pred HHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcchh
Confidence 553 6799999998542 23577888899999999999999999887765554322212111111 0
Q ss_pred ---hHHHHHHHHHhHhhhccCCC
Q 044999 441 ---DLMARSMRRMSIEQLTWDPD 460 (461)
Q Consensus 441 ---~~~~~~~~~~~~~~~~~~p~ 460 (461)
+..+..+..+.+.-++-+|+
T Consensus 475 ~~~~~~l~~~c~illNl~~~e~~ 497 (543)
T PF05536_consen 475 DSAEMALVTACGILLNLVVTEPK 497 (543)
T ss_pred hhhHHHHHHHHHHHHHHHhcccc
Confidence 11345556666666666665
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.78 E-value=9.9e-06 Score=75.15 Aligned_cols=245 Identities=20% Similarity=0.111 Sum_probs=175.9
Q ss_pred HHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHH
Q 044999 121 LRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRE 198 (461)
Q Consensus 121 l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~ 198 (461)
+..+....+..+..+.-....+.+..++-+++..+|..+.+++..+..+++.-..+.+.+.-.-++.-|..+ +..-|.
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 334444555555555544456666654444449999999999999999999999998887666666666654 556789
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhH
Q 044999 199 RACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTG 278 (461)
Q Consensus 199 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 278 (461)
+|++.++.+....+.... ...|++..++.+..+.++..+..++.+|+.++.. +-..+.+.|++..+.+.+.++..++
T Consensus 87 QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~ 163 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSI 163 (371)
T ss_pred HHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhH
Confidence 999999999877554322 2456889999999999999999999999999874 4455778899999999998876678
Q ss_pred HHHHHHHHHHhccCcccHHHHH-----HHHHHHhccC-------CH--HHHHHHHHHHHHhhCCCCchhHHhhc--CCHH
Q 044999 279 KEISEDVFCILAVSEANANAIA-----EHLVRILREG-------DN--EANAAAADVLWDLAGYKHSVPVIRNS--GAIP 342 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~l~~~--g~i~ 342 (461)
.+..+.++..+-..+..+..+. +.++.-+.+. +. +....+..++..+-++=.+.-.+... .++.
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lk 243 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLK 243 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHH
Confidence 8889999999998888887655 3333333221 22 23445555555555442332333322 4788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 343 ILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 343 ~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
.|+..|..++++++......+..+-.
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 89999998888888888877776665
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.78 E-value=7.4e-06 Score=76.90 Aligned_cols=242 Identities=14% Similarity=0.034 Sum_probs=167.9
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.++..|.. + +++.+...++.++..... . ..+..+++.|.+.++.++..++..|..+-..
T Consensus 55 a~~~L~~aL~~----d-~~~ev~~~aa~al~~~~~---~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~- 116 (410)
T TIGR02270 55 ATELLVSALAE----A-DEPGRVACAALALLAQED---A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR- 116 (410)
T ss_pred HHHHHHHHHhh----C-CChhHHHHHHHHHhccCC---h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-
Confidence 67888888863 2 334454444433321111 1 1378899999999999899988888754422
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
+..+.|+.++++.++.++..++.++... .....+.+..+|++.++.++..|+++++.+-
T Consensus 117 ----------~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 117 ----------QAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred ----------HHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 2467789999999999998888777652 2234667888999999999999999999984
Q ss_pred cCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999 209 VTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288 (461)
Q Consensus 209 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 288 (461)
. ...++.|...+.+.++.++..|+.++..+.. ...+..+..+...........+..++..
T Consensus 176 ~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 176 R----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred c----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 3 4467778888999999999999999866633 1224455554444444444444444433
Q ss_pred hccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 289 LAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 289 l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
. ..+ ...+.|..+++... ++..++.+++.+- ....++.|+..+.+.. ++..|..++..++-
T Consensus 236 ~-~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 236 A-GGP----DAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred C-Cch----hHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 3 111 34466777776644 8889999998773 3467888998888643 88899999999887
No 77
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.78 E-value=4.9e-06 Score=82.05 Aligned_cols=380 Identities=15% Similarity=0.151 Sum_probs=209.6
Q ss_pred HHHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVS--GSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA 82 (461)
Q Consensus 8 ~~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~ 82 (461)
..+-+....+.+.+ .|.+||..|+.+.+.+- .+..+..+..+++.+++-|+. +- ....|+.++..++
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n----Ei----TRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN----EI----TRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc----hh----HHHHHHHHHHHHH
Confidence 44445555566664 57899999999998887 344444555599999999975 21 3444899999999
Q ss_pred hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHH
Q 044999 83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLE 161 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~ 161 (461)
.. +-..-....-..+++.+...++......+.....++..+...-. .......+ -.+..+..++..++-.+...|+.
T Consensus 638 ~S-~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~ 715 (1233)
T KOG1824|consen 638 MS-PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVA 715 (1233)
T ss_pred hc-cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHH
Confidence 84 32222122223356777777765554444444444444442110 11111111 12333445566666677788888
Q ss_pred HHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHH--H----------------------------------------HHH
Q 044999 162 ILSALALLREVRRVLICLGGLRYLVEAVSFGSMV--S----------------------------------------RER 199 (461)
Q Consensus 162 ~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~--~----------------------------------------~~~ 199 (461)
.+..+.........-+...+++.++.+++++--. . ..+
T Consensus 716 ~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 716 FLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred HHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence 8888876555544444455677777777655210 0 011
Q ss_pred HH----HHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC
Q 044999 200 AC----QAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG 273 (461)
Q Consensus 200 a~----~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (461)
|. .+...++...+.+ .......|+.-+. ..+..++.-|.-.++.+....+ .....+.-..+++.+.+
T Consensus 796 a~~siA~cvA~Lt~~~~~~----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~---~s~~~e~~~~iieaf~s 868 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQK----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD---LSPQNELKDTIIEAFNS 868 (1233)
T ss_pred HHHHHHHHHHHHHHhcccc----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC---CCcchhhHHHHHHHcCC
Confidence 11 1111111100000 0001222222222 2234455555556666655411 11122445578899999
Q ss_pred CChhHHHHHHHHHHHhccCccc------HHHHH----------HHHHHHhccC-----------------------CHHH
Q 044999 274 PDSTGKEISEDVFCILAVSEAN------ANAIA----------EHLVRILREG-----------------------DNEA 314 (461)
Q Consensus 274 ~~~~~~~~a~~~L~~l~~~~~~------~~~i~----------~~l~~ll~~~-----------------------~~~~ 314 (461)
++.+++.+|..+|++++...-. ..++. ..+...+... .+..
T Consensus 869 p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegt 948 (1233)
T KOG1824|consen 869 PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGT 948 (1233)
T ss_pred ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhh
Confidence 9999999999999999763321 11111 2222222211 1223
Q ss_pred HHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCC
Q 044999 315 NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDES 393 (461)
Q Consensus 315 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~ 393 (461)
|...+.||+.|+..+ -...+|.|-..+.++.+..+..+..++.-... .+.--..+.+ ..+...+.++++++
T Consensus 949 R~vvAECLGkL~l~e-------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpD 1020 (1233)
T KOG1824|consen 949 RNVVAECLGKLVLIE-------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPD 1020 (1233)
T ss_pred HHHHHHHhhhHHhCC-------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCc
Confidence 344444444444321 12357888888888888888877776665554 3332222222 34777888899999
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 044999 394 EELRDNAAESLINFSEDPL 412 (461)
Q Consensus 394 ~~~~~~a~~~L~~l~~~~~ 412 (461)
.++++.|..++...+.+..
T Consensus 1021 l~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 1021 LEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred hhHHHHHHHHHHHHHccCH
Confidence 9999999999988887753
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.6e-05 Score=74.73 Aligned_cols=375 Identities=16% Similarity=0.185 Sum_probs=225.1
Q ss_pred HHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 044999 17 QAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQS 96 (461)
Q Consensus 17 ~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 96 (461)
.++++.-..-+.-.-..+..|. .++.+.+..++..+.+-|.+ . |+..+..|..++.++.. .+.++.+.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~-n~n~dl~klvin~iknDL~s----r--n~~fv~LAL~~I~niG~---re~~ea~~-- 148 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLL-NENSDLMKLVINSIKNDLSS----R--NPTFVCLALHCIANIGS---REMAEAFA-- 148 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHH-hcchHHHHHHHHHHHhhhhc----C--CcHHHHHHHHHHHhhcc---HhHHHHhh--
Confidence 3445443333333333333333 22234444478888777765 3 33445558777777775 33333331
Q ss_pred CCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHH-
Q 044999 97 GVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREV- 172 (461)
Q Consensus 97 ~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~- 172 (461)
..++ ++|.++ .+.+++.++.|+..+-..+++ .+...+....++.+|++.+-.+...+...+..++ .+++.
T Consensus 149 ~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 149 DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence 1234 444443 355788899999988766543 3344467888999999988888788888888888 33333
Q ss_pred HHHHHhcCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccC--CH
Q 044999 173 RRVLICLGGLRYLVEAVS-------------FGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIG--DW 235 (461)
Q Consensus 173 ~~~~~~~~~l~~l~~~l~-------------~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~--~~ 235 (461)
+..+-. .+..|..... -+.+-++...++.|.++-...+. +..+.+ +++.++...+.+ ..
T Consensus 223 k~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k 298 (938)
T KOG1077|consen 223 KTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSK 298 (938)
T ss_pred hhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCcccc
Confidence 222111 1222222221 12456788888888888443333 333333 455555555421 11
Q ss_pred HHH-----HHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---HHHHHH
Q 044999 236 TTK-----LVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---EHLVRI 306 (461)
Q Consensus 236 ~~~-----~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---~~l~~l 306 (461)
.++ -..+--..+++.+ +...+.+. .++..|..++.+.+..+|..++..++.|+........+- +.++..
T Consensus 299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~s 376 (938)
T KOG1077|consen 299 KVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINS 376 (938)
T ss_pred chHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 122 1222233455555 44433332 347789999999999999999999999987766666555 888888
Q ss_pred hc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHH-------
Q 044999 307 LR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALA------- 377 (461)
Q Consensus 307 l~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~------- 377 (461)
|+ ..+-.+|+.|+..|..+|..... +.++ ..+++++.+.++.+|+...-=.+-|+. ....-..++
T Consensus 377 LkterDvSirrravDLLY~mcD~~Na-k~IV-----~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 377 LKTERDVSIRRRAVDLLYAMCDVSNA-KQIV-----AELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred hccccchHHHHHHHHHHHHHhchhhH-HHHH-----HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 88 66899999999999999976443 3333 348888888888888765544444544 211111111
Q ss_pred -------hCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhC
Q 044999 378 -------DAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIG 422 (461)
Q Consensus 378 -------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~ 422 (461)
+.++-..+++.. ..+++++..|+.-+......+.+.+.+++.||
T Consensus 451 riagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 451 RIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred HHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 111122222222 36888999999999988888888888877663
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=6.9e-05 Score=72.16 Aligned_cols=366 Identities=14% Similarity=0.080 Sum_probs=216.6
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCH
Q 044999 20 VSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVI 99 (461)
Q Consensus 20 ~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l 99 (461)
+|.+..-.-.|..+|+.+.++...+. .-+-++.+|.+ ..|-+++.|+..|+.+...=++..+. ..
T Consensus 119 ~S~n~ye~giAL~GLS~fvTpdLARD---La~Dv~tLL~s------skpYvRKkAIl~lykvFLkYPeAlr~------~F 183 (877)
T KOG1059|consen 119 NSSNVYEVGLALSGLSCIVTPDLARD---LADDVFTLLNS------SKPYVRKKAILLLYKVFLKYPEALRP------CF 183 (877)
T ss_pred ccCccchhhheecccccccCchhhHH---HHHHHHHHHhc------CchHHHHHHHHHHHHHHHhhhHhHhh------hH
Confidence 34443333334444444443322222 44566777765 33557777999999998741333443 35
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh-CChHHHHHHH
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA-LLREVRRVLI 177 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~ 177 (461)
+.|++-|.++||.|+..|+..++.|+..+|.+--.+ -|.+.+++.+ .+.-+....+..+++++ ..+.....
T Consensus 184 prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-- 256 (877)
T KOG1059|consen 184 PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-- 256 (877)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh--
Confidence 899999999999999999999999999887664333 4678887754 45567778888888888 45554444
Q ss_pred hcCCHHHHHHHHcCCCH-HHHHHHHHHHH--HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-cc
Q 044999 178 CLGGLRYLVEAVSFGSM-VSRERACQAIG--LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VE 253 (461)
Q Consensus 178 ~~~~l~~l~~~l~~~~~-~~~~~a~~~L~--~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 253 (461)
.++.+.+++.+... .+...+..++. +++...++...-.+ -+++.|-.++.+.++..+..++.+++.+... +.
T Consensus 257 ---Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 257 ---LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred ---hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 46778888877643 56666666554 33333323221111 1467777788899999999999999998865 22
Q ss_pred chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCch
Q 044999 254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL-REGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
.-... -..++.+|.+.++.+|..|+..|.-+... ++-.+|+..|+..+ .......+...+.-+-.+|+-.. -
T Consensus 333 ~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~sn-Y 405 (877)
T KOG1059|consen 333 AVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSK-KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSN-Y 405 (877)
T ss_pred HHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh-h
Confidence 21111 35688899999999999999988877653 35555665555544 34344555555555555553211 1
Q ss_pred hHHhhcC-CHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHH--hc------cCCCHHHHHHHHH
Q 044999 333 PVIRNSG-AIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIE--LL------HDESEELRDNAAE 402 (461)
Q Consensus 333 ~~l~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~--ll------~~~~~~~~~~a~~ 402 (461)
..+.+.. .+..|+++.+-+..+--.....-+..++. -+..|...++. +..|+. ++ ++.-.++..+|+|
T Consensus 406 ~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~--m~~Ll~~~~~~~s~q~n~~l~eVL~AaaW 483 (877)
T KOG1059|consen 406 QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQ--MSALLDDPLLAGSAQINSQLCEVLYAAAW 483 (877)
T ss_pred hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHH--HHHHHhchhhccchhhccchhHHHHHHHH
Confidence 1222111 23445555543221111122222334443 33333333221 222222 11 2235678889999
Q ss_pred HHHHhcCCCcchHHHHHh
Q 044999 403 SLINFSEDPLQHERISEA 420 (461)
Q Consensus 403 ~L~~l~~~~~~~~~l~~~ 420 (461)
++...+..-++.....++
T Consensus 484 i~GEyse~ven~~~~lea 501 (877)
T KOG1059|consen 484 ILGEYSEFVENPNDTLEA 501 (877)
T ss_pred HHHHHHHHhhCHHHHHHH
Confidence 998887666555444443
No 80
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=5.5e-06 Score=82.59 Aligned_cols=421 Identities=15% Similarity=0.085 Sum_probs=271.3
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
-.+..+.+-++..+.++.+|..++.-+++++..-....... .++.+.++... +. ..++..|...+..+....+
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D----dq--dsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD----DQ--DSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc----ch--hhHHHHHHHHHHHHHHhcC
Confidence 44555667778888899999999999999992211222223 88888888875 22 3355557777777776322
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
... -....+.+.+++...++++.++...+.....+...-. .......-++....+++....+.+.....-...+
T Consensus 309 ~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l 382 (759)
T KOG0211|consen 309 DDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKL 382 (759)
T ss_pred Cch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHHH
Confidence 111 2233467889999999998877777766665553111 1222233456677777777777777766666666
Q ss_pred h--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 167 A--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 167 ~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
+ .+.+....+.....++.+-.+..+.+..++.+.+..+..++..-+.-..+ ....+.++..+++..+.++......
T Consensus 383 ~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 383 ACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI--SELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred hhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc--cccChhhhhhcchhhHHHHHhhHHH
Confidence 5 44445556666667888888888889999988887777765443321111 2357778888888899999887766
Q ss_pred HHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc---HHHHHHHHHHHhccCCHHHHHHHHH
Q 044999 245 LGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN---ANAIAEHLVRILREGDNEANAAAAD 320 (461)
Q Consensus 245 L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~ 320 (461)
+..+-.. +...........+|.+..+-.+..+.++......+..++..... ...+.+.+...+.+...++++.|+.
T Consensus 461 ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 461 LSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred HHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6554443 44444555566688888887777888888888887777654331 1112244555555666789999999
Q ss_pred HHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999 321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA 400 (461)
Q Consensus 321 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 400 (461)
.+..++..-. ........++.+......++...|...+.++..++. -.-..+.....+|.+.++..+..+.+|.++
T Consensus 541 ~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nv 616 (759)
T KOG0211|consen 541 NLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINV 616 (759)
T ss_pred HhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhH
Confidence 9998884322 222333456677777666677778877777776664 222234444568999999999999999999
Q ss_pred HHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999 401 AESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL 455 (461)
Q Consensus 401 ~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
+..|..+...-... . ..+.+..++..+.+ +.+.+++++|..+...+
T Consensus 617 ak~L~~i~~~L~~~--~----~~~~v~pll~~L~~---d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 617 AKHLPKILKLLDES--V----RDEEVLPLLETLSS---DQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHHHHhhcchH--H----HHHHHHHHHHHhcc---CcccchhHHHHHHHHHH
Confidence 99998775332211 1 11223333333332 34677777777665544
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.00012 Score=73.53 Aligned_cols=317 Identities=17% Similarity=0.154 Sum_probs=212.6
Q ss_pred HhcCCHHHHHhcCCC--CC-------HHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCC-----------C
Q 044999 94 GQSGVINSVLRLFPQ--SD-------DSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSC-----------N 152 (461)
Q Consensus 94 ~~~~~l~~L~~ll~~--~~-------~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~-----------~ 152 (461)
++..+-|.|++...- +| ..-...++..+.++.. .+.-+.+.++..||++.|..+++.. +
T Consensus 1372 yKYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~d 1451 (2235)
T KOG1789|consen 1372 YKYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDD 1451 (2235)
T ss_pred cccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCc
Confidence 455566777765431 11 1112334444443332 3445678889999999999887542 2
Q ss_pred h--HHHHHHHHHHHHhhCChHHHHHHHhcC-CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 044999 153 D--GTRRYLLEILSALALLREVRRVLICLG-GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE 228 (461)
Q Consensus 153 ~--~~~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 228 (461)
+ .+....+.++...+..+..|+.+.+.. ++..++.++.-+ -+.+...++.++..++....-+..+.+.|++-.++.
T Consensus 1452 mav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp 1531 (2235)
T KOG1789|consen 1452 MAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLP 1531 (2235)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHH
Confidence 2 455677788888888899999999864 788888888766 457788888999999888888888888898888887
Q ss_pred hccc-------------CCHH-------HHHHHHHHHHHHhcC-------ccch---hhh-----------hhcCCHHHH
Q 044999 229 LFHI-------------GDWT-------TKLVAGNTLGVVAAH-------VEYI---TPV-----------AEAGAIPLY 267 (461)
Q Consensus 229 ll~~-------------~~~~-------~~~~a~~~L~~l~~~-------~~~~---~~~-----------~~~g~i~~L 267 (461)
+|-+ ++.. .-..++.+|..|+.. +++- ..+ .+......+
T Consensus 1532 ~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1532 HLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred HHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6641 1111 112344455544322 1110 000 000001111
Q ss_pred HHHhCCC--C----------------------------------------------------------------------
Q 044999 268 AELLQGP--D---------------------------------------------------------------------- 275 (461)
Q Consensus 268 ~~ll~~~--~---------------------------------------------------------------------- 275 (461)
++.+++. +
T Consensus 1612 Lk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~ 1691 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKK 1691 (2235)
T ss_pred HHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHH
Confidence 1111110 0
Q ss_pred -----------------------------------------------hhHHHHHHHHHHHhc-cCcc------cHHHHH-
Q 044999 276 -----------------------------------------------STGKEISEDVFCILA-VSEA------NANAIA- 300 (461)
Q Consensus 276 -----------------------------------------------~~~~~~a~~~L~~l~-~~~~------~~~~i~- 300 (461)
.+-...++.+|.|+. .+++ ....+.
T Consensus 1692 Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig 1771 (2235)
T KOG1789|consen 1692 FAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIG 1771 (2235)
T ss_pred HHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhc
Confidence 011334555666663 3332 222222
Q ss_pred --HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHH
Q 044999 301 --EHLVRILRE-GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALA 377 (461)
Q Consensus 301 --~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 377 (461)
+.+...++. +++.++..|+..+..+..+.++...+...|.+..|+.+|.+ -|..+..++.+|..|+.+++.-....
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 666666654 47889999999999999999999999999999999999987 47789999999999999888888888
Q ss_pred hCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCC
Q 044999 378 DAGAVPIMIELL-HDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 378 ~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
++|++.-+..++ .+.+++.|..++..+..+..++
T Consensus 1851 ~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 999988888877 6788999999999999998776
No 82
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=4.8e-05 Score=73.91 Aligned_cols=284 Identities=10% Similarity=0.091 Sum_probs=184.2
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC 178 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 178 (461)
+-.+.+...+..+.||+.|+.++-.+-.-+++.+..+. +.+-.+|.+.++.+.-.|+.+...+|- +.-+.+ .
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCP--erldLI-H 216 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI-H 216 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh-h
Confidence 34445677788999999999999988877766666443 346668888888888888888887772 222222 2
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH----HH---------------------H-hcC---ChHHHHHh
Q 044999 179 LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR----LL---------------------V-ELG---VIPGLVEL 229 (461)
Q Consensus 179 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~---------------------~-~~~---~i~~L~~l 229 (461)
+-...+++++.+-++.-|...+..|..-++..-... .. . +.+ .++..-.+
T Consensus 217 -knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpL 295 (968)
T KOG1060|consen 217 -KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPL 295 (968)
T ss_pred -HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHH
Confidence 235667777776665556666666655543221100 00 0 000 12233345
Q ss_pred cccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHHHh-
Q 044999 230 FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVRIL- 307 (461)
Q Consensus 230 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~ll- 307 (461)
+.+.++.+...++.+.+.++-.. -..+++..|+.+|.+. .+++...+..+..++. -+..+. |.+-..+
T Consensus 296 l~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~---~~~~lF~P~lKsFfv 365 (968)
T KOG1060|consen 296 LQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSN-REVQYVVLQNIATISI---KRPTLFEPHLKSFFV 365 (968)
T ss_pred HhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHh---cchhhhhhhhhceEe
Confidence 66788899999999999887532 1234578999988754 5566644444444332 223333 5555543
Q ss_pred ccCCH-HHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHH
Q 044999 308 REGDN-EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIM 385 (461)
Q Consensus 308 ~~~~~-~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L 385 (461)
++.+| .++..=+.+|.+|+........ ++.+..++.+.+.++...+..+|+.++. ... +...++..|
T Consensus 366 ~ssDp~~vk~lKleiLs~La~esni~~I------LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gL 434 (968)
T KOG1060|consen 366 RSSDPTQVKILKLEILSNLANESNISEI------LRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTCLNGL 434 (968)
T ss_pred ecCCHHHHHHHHHHHHHHHhhhccHHHH------HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHHHHHH
Confidence 44444 5666778889999865443333 3347788888877788888899998886 222 334578889
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 386 IELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 386 ~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
+.++++.+..+...++..+..|...+.
T Consensus 435 v~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 435 VQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 999999999999999999999876654
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.68 E-value=5.4e-06 Score=78.11 Aligned_cols=260 Identities=15% Similarity=0.141 Sum_probs=171.3
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCChH---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH-
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALLRE---VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR- 215 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~- 215 (461)
++..++.+|++..+++|..|+.....++.--. .-..+...|. .|.+.+....+++....+.++..+.+....+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45667788999999999999988887762211 1223333333 36777788888998888888888776655422
Q ss_pred HHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhh-cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc
Q 044999 216 LLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAE-AGAIPLYAELLQGPDSTGKEISEDVFCILAVSE 293 (461)
Q Consensus 216 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 293 (461)
.-.-.|.+|.|..+|++.+..++......++.++.. ++.- ...+ ..+--.|+++|++.+.++|.+|..+++.++..-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi-~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI-GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 222367999999999999999999999999999987 3321 1111 122334788888899999999999998876432
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh--
Q 044999 294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA-- 371 (461)
Q Consensus 294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-- 371 (461)
..+. +...|++-|+..+-..|....-++.-.+... .-..++|.|+.=-.++...||...+++++.+-....
T Consensus 762 GPqd-vL~~LlnnLkvqeRq~RvctsvaI~iVae~c------gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~ 834 (975)
T COG5181 762 GPQD-VLDILLNNLKVQERQQRVCTSVAISIVAEYC------GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA 834 (975)
T ss_pred CHHH-HHHHHHhcchHHHHHhhhhhhhhhhhhHhhc------CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH
Confidence 2211 2234444444444333433333333333210 012345555555556677789888888888776332
Q ss_pred hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
.+..+. -+.|.|-..+.+.++.-|+.|...+..|+.++
T Consensus 835 s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 835 SLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 233332 35677788888899999999999999887765
No 84
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.9e-06 Score=82.21 Aligned_cols=366 Identities=13% Similarity=0.125 Sum_probs=222.4
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+....|+.+++.....|-+.+...=.-+.+-+...+. ... ++..+++-... +++..+..|.+.+..+-..
T Consensus 46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~--~a~~avnt~~kD~~d------~np~iR~lAlrtm~~l~v~- 116 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD--LAILAVNTFLKDCED------PNPLIRALALRTMGCLRVD- 116 (734)
T ss_pred chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCch--HHHhhhhhhhccCCC------CCHHHHHHHhhceeeEeeh-
Confidence 3455566666666666655555554445555411111 111 44444444432 4455555566666555541
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA 165 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 165 (461)
... .....++.+.++++++.++..++.++.++-..+ .......|.++.|-.++.++++.+...|+.+|..
T Consensus 117 --~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 117 --KIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred --HHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 111 123578899999999999999999998887544 5677889999999999999999999999999999
Q ss_pred hhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 166 LAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 166 l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
+.. +++.-...+....+..++..+..-++.-+...+.++.+-...++ .. . ...+..+...+++.+..+...+..+
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~e-a--~~i~~r~~p~Lqh~n~avvlsavKv 262 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-RE-A--EDICERLTPRLQHANSAVVLSAVKV 262 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hh-H--HHHHHHhhhhhccCCcceEeehHHH
Confidence 983 33211111111233344444443343334444444433322222 11 1 2256777788888888888888888
Q ss_pred HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHH-HhccCCH-HHHHHHHHH
Q 044999 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVR-ILREGDN-EANAAAADV 321 (461)
Q Consensus 245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~-ll~~~~~-~~~~~a~~~ 321 (461)
+.++...........-...-+.++.++.+.. +++..++.=+.-+-...+. +. ..+-. ..+..+| -++..=+.+
T Consensus 263 ~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~kynDPiYvK~eKlei 338 (734)
T KOG1061|consen 263 ILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCKYNDPIYVKLEKLEI 338 (734)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeeecCCchhhHHHHHHH
Confidence 8888766222323333344566777776665 7666554433332222111 11 11111 1233343 455566777
Q ss_pred HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999 322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA 401 (461)
Q Consensus 322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 401 (461)
+..++......+ ++..+.++-...+.+...++++++++++..-+.. +++++.|+++++.+...+.+.+.
T Consensus 339 l~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~ 407 (734)
T KOG1061|consen 339 LIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAI 407 (734)
T ss_pred HHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehh
Confidence 777765433222 4455777777888999999999999999832211 78899999999888888888888
Q ss_pred HHHHHhcCC
Q 044999 402 ESLINFSED 410 (461)
Q Consensus 402 ~~L~~l~~~ 410 (461)
..+..+.+.
T Consensus 408 vvi~dilRk 416 (734)
T KOG1061|consen 408 VVIRDILRK 416 (734)
T ss_pred HHHHhhhhc
Confidence 888888654
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.62 E-value=2.3e-05 Score=73.67 Aligned_cols=250 Identities=14% Similarity=0.051 Sum_probs=172.9
Q ss_pred CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999 97 GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV 175 (461)
Q Consensus 97 ~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 175 (461)
.+++.++..+. ..+..+...++..+... .++. ++..+++.+.+.++.++..+..+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 35778888884 56677655554444311 1211 378899999999999999999999754
Q ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999 176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
...+..+.|..++++.++.++..++.+++.. .....+.+..+++++++.++..|+.+|+.+..
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 2334577788999999999999888877772 12246788889999999999999999998754
Q ss_pred hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999 256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI 335 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 335 (461)
...++.|...+.+.++.+|..|+..+..+.. +. -.+.+..............+..++... .
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~----A~~~l~~~~~~~g~~~~~~l~~~lal~-~-------- 237 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RL----AWGVCRRFQVLEGGPHRQRLLVLLAVA-G-------- 237 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-Hh----HHHHHHHHHhccCccHHHHHHHHHHhC-C--------
Confidence 2346778888999999999999999977643 11 113333323222222222222233222 1
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchH
Q 044999 336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHE 415 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 415 (461)
....++.|..+++++. ++..++.+++.+-... .++.|+..+. ++.++..|.+++..++.-+-...
T Consensus 238 -~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p~----------av~~L~~~l~--d~~~aR~A~eA~~~ItG~~l~~~ 302 (410)
T TIGR02270 238 -GPDAQAWLRELLQAAA--TRREALRAVGLVGDVE----------AAPWCLEAMR--EPPWARLAGEAFSLITGMDVALE 302 (410)
T ss_pred -chhHHHHHHHHhcChh--hHHHHHHHHHHcCCcc----------hHHHHHHHhc--CcHHHHHHHHHHHHhhCCCcchh
Confidence 1256778888888754 8999999998776432 4888999884 44499999999999987664443
Q ss_pred HH
Q 044999 416 RI 417 (461)
Q Consensus 416 ~l 417 (461)
.+
T Consensus 303 ~l 304 (410)
T TIGR02270 303 EL 304 (410)
T ss_pred hh
Confidence 33
No 86
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.62 E-value=6.2e-05 Score=74.62 Aligned_cols=435 Identities=13% Similarity=0.081 Sum_probs=230.2
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh---------------------------------------
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA--------------------------------------- 48 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~--------------------------------------- 48 (461)
-.+.+..+++++++.+.+|+..|.++++-|++.-...++..
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 34566888999999999999999999985441111111111
Q ss_pred -------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHH
Q 044999 49 -------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCL 121 (461)
Q Consensus 49 -------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l 121 (461)
..|.+.+.+.. .++...++..++..+.-+-.. ..+.-.. +..+.+..++--+.+....+++.+..++
T Consensus 125 a~tV~~~~t~~l~~~i~~----qe~~sai~~e~lDil~d~lsr-~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISK----QEDVSAIKCEVLDILADVLSR-FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred ccHHHHHHHHHHHHHhhh----cccchhhHHHHHHHHHHHHHh-hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 22222222222 222222333333333333331 0000000 2334455566667788888999999999
Q ss_pred HHHhccChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH---cCCCHHHH
Q 044999 122 RVFVTFGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV---SFGSMVSR 197 (461)
Q Consensus 122 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~~ 197 (461)
..++.... +..+ .+.++.+.+-|... .+.....-+.+|..++.....|..-.-...++.+.++. +.+++++|
T Consensus 199 ~~la~~~~--~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 199 GHLASSCN--RDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHhcC--HHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 98885331 2222 22355566655443 44555666677777774333332222234788888888 66788999
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc----------------------------------CCHHHHHHHHH
Q 044999 198 ERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI----------------------------------GDWTTKLVAGN 243 (461)
Q Consensus 198 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~----------------------------------~~~~~~~~a~~ 243 (461)
+.++.++..+....+..-.-+...++..+++.+.. -++.+|+.|+.
T Consensus 275 E~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK 354 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK 354 (1233)
T ss_pred HHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH
Confidence 99999998876554331111112233334433320 02468889999
Q ss_pred HHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh----c---------------cCcccHHHHH---
Q 044999 244 TLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL----A---------------VSEANANAIA--- 300 (461)
Q Consensus 244 ~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l----~---------------~~~~~~~~i~--- 300 (461)
++..+... .+.-..+.. ..-|.++.-++..++.++.-...+...+ . ..+.+...+.
T Consensus 355 cl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~ 433 (1233)
T KOG1824|consen 355 CLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQV 433 (1233)
T ss_pred HHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhh
Confidence 99887654 333333322 2236777777766555554443333222 0 0111112222
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhcC-Chhh
Q 044999 301 ----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN--DEVREKVSGAIAQLSY-NEAD 372 (461)
Q Consensus 301 ----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~-~~~~ 372 (461)
..+-+.+++.+...+..+...|..+... |..... .....+|.+...+.+.+ ...+..++..+.+.-. ++..
T Consensus 434 ~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 434 PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 4455556666666777777777777743 333222 22346788888887654 4466666665555443 2221
Q ss_pred HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC--CcchHHHHHhhCCchHHhHHHHHHHhhh--chhHHHHHHH
Q 044999 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED--PLQHERISEAIGIPSFQSMQSRLTRIRA--SDDLMARSMR 448 (461)
Q Consensus 373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~ 448 (461)
...-...-..+.+.-...++-..+...|......++.. |-.. =...++.+.+..+.....+.-. ..|..||++|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~--~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkera 590 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQP--PSSFDASPYVKTMYDCTLQRLKATDSDQEVKERA 590 (1233)
T ss_pred hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCC--CccCCCChhHHHHHHHHHHHHhcccccHHHHHHH
Confidence 11111112244444455566677777777666666432 1111 0023344445554443322111 1477799998
Q ss_pred HHhHhhhc
Q 044999 449 RMSIEQLT 456 (461)
Q Consensus 449 ~~~~~~~~ 456 (461)
...+.++.
T Consensus 591 Iscmgq~i 598 (1233)
T KOG1824|consen 591 ISCMGQII 598 (1233)
T ss_pred HHHHHHHH
Confidence 88887763
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=5.5e-07 Score=83.21 Aligned_cols=291 Identities=15% Similarity=0.086 Sum_probs=194.1
Q ss_pred HHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCC
Q 044999 157 RYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGD 234 (461)
Q Consensus 157 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~ 234 (461)
..++..|..++ .-.-.|..+.+..+.+.|+++|+.++..+...+...++|+.-.-.+ +..|.+.|++..++.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 44556666777 3455577888889999999999988777777888888888877777 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc----ccH---------HHH
Q 044999 235 WTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE----ANA---------NAI 299 (461)
Q Consensus 235 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~---------~~i 299 (461)
...|....|.++.+..+ .+.+-.+...-++..++++.+++...++..+...|.|+..+. +.+ ..+
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999887 333444555556999999999999999999999999996522 121 122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh--cCCHHHHHHhhc----C-----C--CHHHHHHHHHHHHHh
Q 044999 300 AEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN--SGAIPILVNLLR----G-----E--NDEVREKVSGAIAQL 366 (461)
Q Consensus 300 ~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~--~g~i~~L~~ll~----~-----~--~~~v~~~a~~~L~~l 366 (461)
.+.+++.+...+|-.....+.+|.+++..++....++. ...+..+.+++. . + ...+...-.....++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 38888888888888777889999999977777666552 233433333332 1 1 011212222233333
Q ss_pred cCC-hhhHHHHHhCCChHHHHHh---ccCCCHHHHHHHHHHHHHhcCCCcch---------HHHHHhhCCchHHhHHHHH
Q 044999 367 SYN-EADRVALADAGAVPIMIEL---LHDESEELRDNAAESLINFSEDPLQH---------ERISEAIGIPSFQSMQSRL 433 (461)
Q Consensus 367 ~~~-~~~~~~~~~~~~i~~L~~l---l~~~~~~~~~~a~~~L~~l~~~~~~~---------~~l~~~~~~~~~~~l~~~l 433 (461)
..+ ......+.-. |.+-.+ -.+++.+.-.+..|.+.|+.+...+. ..+....|.+....+.+
T Consensus 647 ~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q-- 721 (743)
T COG5369 647 SENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQ-- 721 (743)
T ss_pred cccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHh--
Confidence 331 1111111100 111111 12357778888899999987665442 22333334443333322
Q ss_pred HHhhhchhHHHHHHHHHhHhhhc
Q 044999 434 TRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
..++..+++.++.+++++-
T Consensus 722 ----~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 722 ----AKDSLIVREKIGTALENLR 740 (743)
T ss_pred ----ccCcHHHHHHHHHHHHhhh
Confidence 3346789999999998863
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=3.2e-06 Score=78.32 Aligned_cols=284 Identities=12% Similarity=0.030 Sum_probs=193.0
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH
Q 044999 116 VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM 194 (461)
Q Consensus 116 ~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~ 194 (461)
.++.++..++.+-...|..+.+..+.+.|+++|++++..+...+...++|.. .....+..+++.|++..++..+.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 3444555777777777888889999999999999988888888889999988 778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----ccchhhhhhcC----CH
Q 044999 195 VSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VEYITPVAEAG----AI 264 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g----~i 264 (461)
.+|....+.++.+..+.+. +-.+...-++..++++..++...++...+..|+|+..+ ++.+..+.+.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999999888776 55667778899999999999999999999999999885 22344333332 23
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---HHHHHHh--------cc-----CC-H-HHHHHHHHHHHHhh
Q 044999 265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---EHLVRIL--------RE-----GD-N-EANAAAADVLWDLA 326 (461)
Q Consensus 265 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---~~l~~ll--------~~-----~~-~-~~~~~a~~~L~~l~ 326 (461)
..|++.+...+|-.-...+..|.+++..++....++ +.++..+ .. ++ + .+-..-.....++.
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 445666666666655666888888877777766655 2222211 11 00 0 00000011111111
Q ss_pred CCCCchhHHhhcCCHHHHHHh------hc----CCCHHHHHHHHHHHHHhcCChh----------hHHHHHhCCChHHHH
Q 044999 327 GYKHSVPVIRNSGAIPILVNL------LR----GENDEVREKVSGAIAQLSYNEA----------DRVALADAGAVPIMI 386 (461)
Q Consensus 327 ~~~~~~~~l~~~g~i~~L~~l------l~----~~~~~v~~~a~~~L~~l~~~~~----------~~~~~~~~~~i~~L~ 386 (461)
.+ .|....++.. .. +.+.+...+..|.+.|+.-.+. -...+.+.|.-+.|.
T Consensus 648 e~---------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~ 718 (743)
T COG5369 648 EN---------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLV 718 (743)
T ss_pred cc---------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHH
Confidence 11 1222222221 11 2345566677777777655222 123445556555555
Q ss_pred HhccCCCHHHHHHHHHHHHHhc
Q 044999 387 ELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 387 ~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.+..+.++.+++.+-.+|.++-
T Consensus 719 k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 719 KIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHhccCcHHHHHHHHHHHHhhh
Confidence 5667788899999999998873
No 89
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.56 E-value=2.6e-06 Score=64.11 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=115.4
Q ss_pred HHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999 301 EHLVRIL-REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA 379 (461)
Q Consensus 301 ~~l~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 379 (461)
..|+.-+ ...+.+.++....-|.|++.+|-+-..+.+.++++.++.-+..++..+++.++..|+|+|.++.+++.+.+.
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea 98 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREA 98 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHh
Confidence 4444444 345778888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999 380 GAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL 455 (461)
Q Consensus 380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
+++|.++..+.++...+...++.++..|+... |....+ .-.+...+.++ +|+.+.+...+-.+...+++.
T Consensus 99 ~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--Rt~r~e-ll~p~Vv~~v~---r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 99 LGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--RTERDE-LLSPAVVRTVQ---RWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred cCCceEEeecCCChHHHHHHHHHHHHHhcCcc--cchhHH-hccHHHHHHHH---HHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999888888999888887543 222222 23344443333 344444555666666666553
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00018 Score=69.19 Aligned_cols=228 Identities=11% Similarity=0.083 Sum_probs=132.7
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCC-chhHHHhhHHHHHHhhccCC-------CCCCCcHHHHHHHHHHHH
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVS--KFA-PQDILAATIPILARLLGENN-------FSGNLTRSIQQAAAYCLK 79 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~-~~~~l~~~i~~l~~~l~~~~-------~~~~~~~~~~~~a~~~L~ 79 (461)
+-..+++++|.+.+..|...+...+-.++ +++ .+..+-.++..|.+...... |-.-+.|..|...++.|.
T Consensus 187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq 266 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQ 266 (938)
T ss_pred hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHH
Confidence 45567777777777777776666666666 222 22222224444444333210 012234566665656655
Q ss_pred HHHhcCCchhHHHHHhcCCHHHHHhcCC----CCCHH---HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC
Q 044999 80 QIASQADGALATEIGQSGVINSVLRLFP----QSDDS---FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN 152 (461)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 152 (461)
..=. +++......-..+++.++...+ +.++. .+........+++.+-+.....+.+ .+..|.+++.+.+
T Consensus 267 ~~p~--~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 267 IYPT--PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE 342 (938)
T ss_pred hCCC--CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc
Confidence 5533 2222222222233444444333 12221 1112222222555544444444444 4778888999999
Q ss_pred hHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc
Q 044999 153 DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH 231 (461)
Q Consensus 153 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~ 231 (461)
.++|.-|++.++.++..+.....+... ...++..|+ ..|..+|+.++..|..++.....+. ++..+++.+.
T Consensus 343 ~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------IV~elLqYL~ 414 (938)
T KOG1077|consen 343 TNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------IVAELLQYLE 414 (938)
T ss_pred ccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------HHHHHHHHHh
Confidence 999999999999999776666665554 777888888 5588999999999999987665443 3566777777
Q ss_pred cCCHHHHHHHHHHHHHHh
Q 044999 232 IGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 232 ~~~~~~~~~a~~~L~~l~ 249 (461)
+.+..+++..+.=..-|+
T Consensus 415 tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILA 432 (938)
T ss_pred hcchHHHHHHHHHHHHHH
Confidence 778777776544444444
No 91
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.47 E-value=3.2e-06 Score=63.66 Aligned_cols=132 Identities=12% Similarity=0.016 Sum_probs=111.5
Q ss_pred CHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 044999 140 GLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV 218 (461)
Q Consensus 140 ~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 218 (461)
.+..|+. +-...+.+.++....-|.|++-++-+-..+.+.+++..++..+..+++.+.+.+++.|+|+|....+.+.+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 3444554 334567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh
Q 044999 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL 271 (461)
Q Consensus 219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll 271 (461)
+.++++.++..+.++...+...++.++..++.. ...+..+....++..+..+-
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999999999999999999999887 55666665555555555444
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00061 Score=68.65 Aligned_cols=314 Identities=16% Similarity=0.207 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhhc--CCCchhHHHh------hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcC
Q 044999 26 LQVKALTKLARVS--KFAPQDILAA------TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSG 97 (461)
Q Consensus 26 ~~~~a~~~l~~la--~~~~~~~l~~------~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 97 (461)
-...+..+|.|+. ++.....+.. -++.+..++.. . .++.+|..|...+..+.. +.++-..+...|
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~----~-~~~~iq~LaL~Vi~~~Ta--n~~Cv~~~a~~~ 1813 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRC----R-KHPKLQILALQVILLATA--NKECVTDLATCN 1813 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHH----c-CCchHHHHHHHHHHHHhc--ccHHHHHHHhhh
Confidence 4566888888888 6644433322 56677777875 3 456789999999988888 888999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCCh----HH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLR----EV 172 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~----~~ 172 (461)
.+..|+.+|.+. |..+..+...++.+++.. +.-....+.|++..+..++. +..+..|..|...+.++..++ ..
T Consensus 1814 vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1814 VLTTLLTLLHSQ-PSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence 999999998764 455889999999999544 66666677888888887665 445688889999999887433 11
Q ss_pred HH-----------HHHhcCCHHHHHHHHcCC--CHH------HHHHHHHHHHHhh--------cCch-------------
Q 044999 173 RR-----------VLICLGGLRYLVEAVSFG--SMV------SRERACQAIGLLA--------VTGR------------- 212 (461)
Q Consensus 173 ~~-----------~~~~~~~l~~l~~~l~~~--~~~------~~~~a~~~L~~l~--------~~~~------------- 212 (461)
+. ..++ ++-+..+..+... +++ .+......+..+. .++.
T Consensus 1892 ~ITL~kFLP~~f~d~~R-D~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLR-DSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred eeehHHhchHHHHHHHh-cCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence 11 1111 1224455555432 222 2222222222222 1110
Q ss_pred -----------h-HHHHHhc------------CChHHHHHhcccCCH--HHHHHHHHHHHHHhc-CccchhhhhhcCCHH
Q 044999 213 -----------A-RRLLVEL------------GVIPGLVELFHIGDW--TTKLVAGNTLGVVAA-HVEYITPVAEAGAIP 265 (461)
Q Consensus 213 -----------~-~~~~~~~------------~~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~ 265 (461)
. +..+.+. +.++.+.+++...++ .....-..++..|-. ++.....+-..|-+|
T Consensus 1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylP 2050 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLP 2050 (2235)
T ss_pred hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchH
Confidence 0 1112221 234445555553332 222222334444433 477777777789999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC--CCchhHHhhc
Q 044999 266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY--KHSVPVIRNS 338 (461)
Q Consensus 266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~ 338 (461)
.++..+...+..+-..|++.|..|+.+.-+...+. ..+++.+...- ...-.|+.+|..+... .+...+..+.
T Consensus 2051 K~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2051 KFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred HHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 99999987777777899999999999988888887 55666664432 2333788888887742 3445566789
Q ss_pred CCHHHHHHhhcC
Q 044999 339 GAIPILVNLLRG 350 (461)
Q Consensus 339 g~i~~L~~ll~~ 350 (461)
|.+|.|+++|..
T Consensus 2130 gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDS 2141 (2235)
T ss_pred CcHHHHHHHhcc
Confidence 999999999974
No 93
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.44 E-value=5.1e-06 Score=78.26 Aligned_cols=258 Identities=12% Similarity=0.158 Sum_probs=169.1
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh--hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN--ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV 175 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 175 (461)
.+..++++|++..+.++..++..+..++.--. .--..+...| ..|.+-++...+++.-..+.+++.+......+..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 35667789999999999999988886664211 1123333333 2466777888888877777777766533222210
Q ss_pred -HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh----HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 176 -LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA----RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 176 -~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
=--.|++|.+..+|.+....++......++.++...+. ++.|. +--.|+++|++-+.++++.|..+++.++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 01247899999999999999999999999999887764 33332 23457788888999999999999999986
Q ss_pred CccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--
Q 044999 251 HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-- 328 (461)
Q Consensus 251 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-- 328 (461)
. +..+.++..|++-|+..+...|....-++.-.+... ..-.+.|.++.=-.++...++...+++++.+-..
T Consensus 760 a------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c-gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 760 A------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC-GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred h------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc-CchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 3 222334556666665554444443333332222111 0011125555555566677888888887777643
Q ss_pred CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 044999 329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN 369 (461)
Q Consensus 329 ~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 369 (461)
...++.+. -..|.|-+.+.+.++.-+..|...+..|+.+
T Consensus 833 ~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 833 QASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 23333333 3678888888999999999999999999884
No 94
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=8.8e-05 Score=74.26 Aligned_cols=380 Identities=14% Similarity=0.140 Sum_probs=252.6
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+...++.+.++..++...||..|...+..+. .-.......+ ..+.+++.... ++. .+..........+...
T Consensus 274 ~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d----~~~--~v~~~~~~~~~~L~~~- 346 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED----GSW--RVSYMVADKFSELSSA- 346 (759)
T ss_pred HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC----hhH--HHHHHHhhhhhhHHHH-
Confidence 5566788899999999999999999998888 2111113333 77777777764 221 2222244444444431
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
-+ .......-.+....++++...+++...+.-...++. .+.++...+.....++.+..+..+.+..++...+..+.
T Consensus 347 -~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 347 -VG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred -hc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 00 011122335667778888777777777766666665 33345566677777888888888888888888888777
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHH
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAG 242 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 242 (461)
.+. ..+.. .- -....+.+...+++..+.++......+..+-...+. .........++.+..+-....+.++....
T Consensus 424 ~~~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 776 22210 00 123567777788888889998888877666555554 44555666788888888877888888888
Q ss_pred HHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---cHHHHHHHHHHHhccCCHHHHHHHH
Q 044999 243 NTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---NANAIAEHLVRILREGDNEANAAAA 319 (461)
Q Consensus 243 ~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~l~~ll~~~~~~~~~~a~ 319 (461)
..+..++.... ..+.....-+.+...+.+...++++.|+..+..++..-. .+..+++.++.+...++.-.|...+
T Consensus 501 ~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 501 EYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHH
Confidence 88877776522 333333344555566666677899999998888854333 3344447777777666677777776
Q ss_pred HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999 320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELR 397 (461)
Q Consensus 320 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 397 (461)
.++..++.- ....+.....+|.+.++..++.+.||..+++.|..+.. +. ...+..+.|.+..+-++.+.+++
T Consensus 579 ~si~~la~v--~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 579 FSIHELAEV--LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred HHHHHHHHH--hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchh
Confidence 666655431 22334445678999999999999999999999988876 33 33344456777777788888888
Q ss_pred HHHHHHHHHhc
Q 044999 398 DNAAESLINFS 408 (461)
Q Consensus 398 ~~a~~~L~~l~ 408 (461)
..|..+...+.
T Consensus 653 ~~a~~a~~~i~ 663 (759)
T KOG0211|consen 653 YRAILAFGSIE 663 (759)
T ss_pred HHHHHHHHHHH
Confidence 88877776654
No 95
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=5.4e-05 Score=78.67 Aligned_cols=335 Identities=12% Similarity=0.051 Sum_probs=183.5
Q ss_pred HHHHHHHhhcCC-HHHHHHHHHHHHhhc-CC--CchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999 12 FNRFEQAVVSGS-EALQVKALTKLARVS-KF--APQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87 (461)
Q Consensus 12 ~~~l~~ll~~~~-~~~~~~a~~~l~~la-~~--~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 87 (461)
+=.|+++.++.- =.-|.-|+..++.++ .. +.+-.+.+.||.|.+.=.. +|+.+|... ..+++.... +.
T Consensus 958 VYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD------P~~~Vq~aM-~sIW~~Li~-D~ 1029 (1702)
T KOG0915|consen 958 VYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD------PDKKVQDAM-TSIWNALIT-DS 1029 (1702)
T ss_pred HHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC------CcHHHHHHH-HHHHHHhcc-Ch
Confidence 334445444432 244566888999999 33 2222334488888887764 556677754 445544442 32
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH--HHHHHcCCHHHHHHHhcCCChHHH---HHHHHH
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR--VIVARNGGLEIVIDLLNSCNDGTR---RYLLEI 162 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~---~~a~~~ 162 (461)
.....-+-...++.|+.-|.+..+.+|..++.++..+....+..+ +.+- .....+++..++=.+.+| ..++.+
T Consensus 1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARA 1107 (1702)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233467778888889999999999999999987543221 1111 123333333333334454 456677
Q ss_pred HHHhh-CChHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHH
Q 044999 163 LSALA-LLREVRRVLICLGGLRYLVEAVS-----FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWT 236 (461)
Q Consensus 163 L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 236 (461)
|..++ .-.+.....-...++..++.+|- +.-.++|..++.++..++.+.+..-.-.-...++.|+.....-.+.
T Consensus 1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred HHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchH
Confidence 77766 11111000001113333444332 3456999999999999998877632222244678888877755554
Q ss_pred HHH-HHHHHHHHHhcC--ccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccC-C
Q 044999 237 TKL-VAGNTLGVVAAH--VEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREG-D 311 (461)
Q Consensus 237 ~~~-~a~~~L~~l~~~--~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~-~ 311 (461)
+.- .++++ .+.... +..|....+. -.+..+=.++..-|..+ -.++.|.+.++++++ .
T Consensus 1188 vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v-----------------Leelip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1188 VLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDISV-----------------LEELIPRLTELVRGSVG 1249 (1702)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH-----------------HHHHHHHHHHHHhccCC
Confidence 433 33333 222221 2223333222 12223333333333332 234458888888766 4
Q ss_pred HHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHH
Q 044999 312 NEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVAL 376 (461)
Q Consensus 312 ~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~ 376 (461)
-..+..++..+..|+.. .+...... ..+..+...+++.++.+++.-..+.+.|+. .++....+
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~emtP~sg--Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKL 1316 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSEMTPYSG--KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKL 1316 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccccCcchh--HHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 45666777777777631 22222211 245567777788889999998888998888 44433444
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2.5e-05 Score=74.35 Aligned_cols=253 Identities=10% Similarity=0.055 Sum_probs=161.3
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
+..-+..+... .|+.+..+|+.+|..|.+. ..-.+ . .-...++.+++.+.+|+..|...++-+....
T Consensus 199 ~~~~l~~~~~~------~D~~Vrt~A~eglL~L~eg-~kL~~-~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 199 AARGLIYLEHD------QDFRVRTHAVEGLLALSEG-FKLSK-A-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred HHHHHHHHhcC------CCcchHHHHHHHHHhhccc-ccccH-H-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 33445555543 4566777788888888872 22111 1 2466789999999999999988777444321
Q ss_pred -----hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Q 044999 129 -----NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQ 202 (461)
Q Consensus 129 -----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~ 202 (461)
.++...-..-.++..++..+++-+-.+|..|.+.|+.+- ..++...+..+..++..+-+.-.. .+..-.
T Consensus 266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a-----hkrpk~ 340 (823)
T KOG2259|consen 266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA-----HKRPKA 340 (823)
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc-----ccchHH
Confidence 111111122235677888888888889999999998876 334443333333333322111000 000011
Q ss_pred HHHHh--hc------------CchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHH
Q 044999 203 AIGLL--AV------------TGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLY 267 (461)
Q Consensus 203 ~L~~l--~~------------~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L 267 (461)
...+- ++ .+.....+..+|+-..++.-+.++-.+++..|+..++.|+.+ +...... +.-|
T Consensus 341 l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfL 415 (823)
T KOG2259|consen 341 LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFL 415 (823)
T ss_pred HHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHH
Confidence 11111 00 111134567788889999999999999999999999999987 5554443 7889
Q ss_pred HHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044999 268 AELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWD 324 (461)
Q Consensus 268 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~ 324 (461)
+++++++..++|..|..+|..++.+-..++...+.+...|.+.++++|+..-..|++
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999999999988766666666666666666666666555444443
No 97
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=3e-05 Score=77.50 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=170.1
Q ss_pred HHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-C-
Q 044999 116 VLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-G- 192 (461)
Q Consensus 116 ~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~- 192 (461)
.|...|..+..-.+=.-..-..-|++|..+++|+++..+++-.-+.+..++. .++..+..+++.++-..++.+|.. +
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence 3444444444444333444557799999999999999999988888888877 788888899999888888888876 3
Q ss_pred -CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHH
Q 044999 193 -SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYA 268 (461)
Q Consensus 193 -~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~ 268 (461)
+++-|..|+.+|..+..+... ++...+.+.+...+..+.++ .+-.+.+.+-+|+.|-.+ +..|=.=.+.++.+.|.
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 568899999999999999877 88888889999999999885 688999999999999988 66666666778899999
Q ss_pred HHhCCCChhHHHHHHHHHHHhccCc----ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHH
Q 044999 269 ELLQGPDSTGKEISEDVFCILAVSE----ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPIL 344 (461)
Q Consensus 269 ~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L 344 (461)
.++.++-++||..|..+|..+..+. +.+....+..+. |-...-..+.++.. +...+
T Consensus 649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-------------------l~~~~~~~E~~i~~-~~~~l 708 (1387)
T KOG1517|consen 649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-------------------LDDERTSIEDLIIK-GLMSL 708 (1387)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-------------------chhhhhhHHHHHHh-hHHHH
Confidence 9999999999999999998884421 111111111111 10000001111111 11356
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 345 VNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 345 ~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+.+++++++-++.+...+|..+..
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHH
Confidence 677788888888888888887776
No 98
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=4e-05 Score=76.67 Aligned_cols=219 Identities=15% Similarity=0.083 Sum_probs=164.0
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-- 151 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-- 151 (461)
|+..|.++...|+...- .-..-|+.|..+++|.++-.+.+...+..-..+..-++.++..+++.+|-..++..|..+
T Consensus 490 AL~LL~RFLDlGpWAV~-LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 490 ALVLLARFLDLGPWAVD-LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHHHHHHhccchhhhh-hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence 77778877775554432 334678999999999999888666555444454446679999999999999999888762
Q ss_pred -ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHH
Q 044999 152 -NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLV 227 (461)
Q Consensus 152 -~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~ 227 (461)
+++-|..|+.+|+.++ ...-.++...+.+.+...++.+.++ .+-++.+++-+|+.|-.+.+. +..=.+.++.+.|+
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 3478899999999999 5566677888888899889999886 678999999999999988887 55556688999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHhcC-----ccchhhh------------hhcCCH---HHHHHHhCCCChhHHHHHHHHHH
Q 044999 228 ELFHIGDWTTKLVAGNTLGVVAAH-----VEYITPV------------AEAGAI---PLYAELLQGPDSTGKEISEDVFC 287 (461)
Q Consensus 228 ~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~------------~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~ 287 (461)
.++.++-+++|..|+-+|+.+-.+ ++..... ++.-+. -.++.++++..+-++.....+|.
T Consensus 649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999988764 1111111 111111 24555666677777777777777
Q ss_pred HhccCc
Q 044999 288 ILAVSE 293 (461)
Q Consensus 288 ~l~~~~ 293 (461)
.++...
T Consensus 729 ~~~~g~ 734 (1387)
T KOG1517|consen 729 HFVVGY 734 (1387)
T ss_pred HHHHhh
Confidence 665443
No 99
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00034 Score=65.90 Aligned_cols=339 Identities=14% Similarity=0.065 Sum_probs=163.6
Q ss_pred CcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHH-----HHHHHHHHhccChhhHHHHHHcCC
Q 044999 66 LTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTV-----LVKCLRVFVTFGNENRVIVARNGG 140 (461)
Q Consensus 66 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~g~ 140 (461)
.++-.|-||+..|+++-.. +. + ..-.+++.+..+. .+..+ ..+.+..+...++.....+
T Consensus 202 ~~~isqYHalGlLyq~kr~-dk-----m----a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~q~----- 265 (898)
T COG5240 202 GNPISQYHALGLLYQSKRT-DK-----M----AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALLQL----- 265 (898)
T ss_pred CChHHHHHHHHHHHHHhcc-cH-----H----HHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHHHH-----
Confidence 4577888888888888873 21 1 2234555555443 22222 2233334444454433333
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVEL 220 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 220 (461)
.|.|-..+++.-+.+...+++.+..++... ....+++ ..+..|-.+|.+.....|-.|+++|..++...+.+-...+.
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 345666677777788899999998887322 1112222 14667778888999999999999999998776543222111
Q ss_pred C------------ChHHHHHhcccCCHHHHHHHHHHHHHHhcC-c-cchhhhhhc-------------CCHHHHHHHhC-
Q 044999 221 G------------VIPGLVELFHIGDWTTKLVAGNTLGVVAAH-V-EYITPVAEA-------------GAIPLYAELLQ- 272 (461)
Q Consensus 221 ~------------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~-------------g~i~~L~~ll~- 272 (461)
. ..-.+..+|+.++.+....-...+.++..+ . ..+..+++. ..+.-|...|.
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 0 111233344444433333333333333222 1 111110000 00112222211
Q ss_pred CCChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc
Q 044999 273 GPDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR 349 (461)
Q Consensus 273 ~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~ 349 (461)
.+..+.+..+..++..+. ..|+.++...+.|...+.+. .++ -++.+|.-|... |.... -...+..+..-+-
T Consensus 424 eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~---I~vrIL~iLG~EgP~a~~---P~~yvrhIyNR~i 497 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQ---ITVRILGILGREGPRAKT---PGKYVRHIYNRLI 497 (898)
T ss_pred cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhH---HHHHHHHHhcccCCCCCC---cchHHHHHHHHHH
Confidence 112333333333333332 12222222223333332211 122 112222222211 10000 0001222333333
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhH
Q 044999 350 GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSM 429 (461)
Q Consensus 350 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l 429 (461)
-.+.-+|..|..+|..++.+.+.. +....+...|.+.+++.++++|..|..+|.++-..+.+.+ +.+....+.+..+
T Consensus 498 LEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~p-l~~sd~~~dipsl 574 (898)
T COG5240 498 LENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACEP-LFSSDELGDIPSL 574 (898)
T ss_pred HhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhhc-cccccccCCcchh
Confidence 345568888999998877732211 1111234567788899999999999999999975554443 4444444444433
Q ss_pred HH
Q 044999 430 QS 431 (461)
Q Consensus 430 ~~ 431 (461)
..
T Consensus 575 e~ 576 (898)
T COG5240 575 EL 576 (898)
T ss_pred HH
Confidence 33
No 100
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=2.4e-05 Score=74.42 Aligned_cols=296 Identities=15% Similarity=0.089 Sum_probs=183.6
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+-+.+...+..+..+.|..||..|+.++..|.+ ..++-+ +....++.+.. ++.+++..|++.+.-.+..-
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e---g~kL~~~~Y~~A~~~lsD------~~e~VR~aAvqlv~v~gn~~ 265 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE---GFKLSKACYSRAVKHLSD------DYEDVRKAAVQLVSVWGNRC 265 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc---cccccHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHhcC
Confidence 344555558889999999999999999988883 122334 66777778874 44556666666655554320
Q ss_pred --C---chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999 86 --D---GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL 160 (461)
Q Consensus 86 --~---~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~ 160 (461)
+ +.....+. ..+...+...+++.+..++..+++.+..+-.-+++.-.....- .++.-++... .-.+..-
T Consensus 266 p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr-~ahkrpk 339 (823)
T KOG2259|consen 266 PAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKR-TAHKRPK 339 (823)
T ss_pred CCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhh-hcccchH
Confidence 1 11111221 2345677788888899999999988886654332221111111 1111010000 0000000
Q ss_pred HHHHHh--h------------CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHH
Q 044999 161 EILSAL--A------------LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPG 225 (461)
Q Consensus 161 ~~L~~l--~------------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~ 225 (461)
....+. + ..++....++..|....++.-+.++-.++|..|...++.|+.+.+. ... .+..
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldf 414 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDF 414 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHH
Confidence 111111 0 1223345677788888888888888889999999999999987765 322 5789
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHH
Q 044999 226 LVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLV 304 (461)
Q Consensus 226 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~ 304 (461)
|++++.++...++..|..+|..++.+-..++.. ++.++..|.+.++++|+..-..|++.-..+-.+-.+. ..++
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeq-----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL 489 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVHLAIREEQ-----LRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLL 489 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHheecHHH-----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999873333333 7899999999999999988888888755544443333 4444
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCC
Q 044999 305 RILREGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 305 ~ll~~~~~~~~~~a~~~L~~l~~~ 328 (461)
..|.. .|.-+.....+++.+..+
T Consensus 490 ~~L~k-yPqDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 490 KNLGK-YPQDRDEILRCMGRIGQN 512 (823)
T ss_pred HHhhh-CCCCcHHHHHHHHHHhcc
Confidence 44321 122222444555555543
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.29 E-value=0.0011 Score=61.80 Aligned_cols=248 Identities=23% Similarity=0.224 Sum_probs=136.2
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.+++.+.. . ++.++..++..+..+.. .-.++.+.+.+.+.++.++..++.++..+-...
T Consensus 44 ~~~~~~~~l~~----~--~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~ 105 (335)
T COG1413 44 AADELLKLLED----E--DLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELGDPE 105 (335)
T ss_pred hHHHHHHHHcC----C--CHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh
Confidence 55666666664 2 34444445555444432 124566777777777777777777555444222
Q ss_pred hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCH------------H
Q 044999 129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSM------------V 195 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~------------~ 195 (461)
.++.+++++. +.+..+|..+..+|..+-. ...+..++..+.+... .
T Consensus 106 -----------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~ 164 (335)
T COG1413 106 -----------AVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLD 164 (335)
T ss_pred -----------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHH
Confidence 3566666666 4666777777777765531 1124445555554331 3
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC
Q 044999 196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD 275 (461)
Q Consensus 196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (461)
++..+...++.+ .+...++.+...+.+.+..++..+..+|..+.... ..+.+.+...+.+.+
T Consensus 165 ~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~ 226 (335)
T COG1413 165 VRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES 226 (335)
T ss_pred HHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC
Confidence 455555555544 23345677777777777777777777777766543 233566777777777
Q ss_pred hhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHH
Q 044999 276 STGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEV 355 (461)
Q Consensus 276 ~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v 355 (461)
..++..++..|..+-.... .+.+...+...++.++..+...+... ........+...+.+....+
T Consensus 227 ~~vr~~~~~~l~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~ 291 (335)
T COG1413 227 LEVRKAALLALGEIGDEEA-----VDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLLLIDEANAV 291 (335)
T ss_pred HHHHHHHHHHhcccCcchh-----HHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHHhhcchhhH
Confidence 7777777766665533221 13444445555544444443333310 01122334444555555555
Q ss_pred HHHHHHHHHHhcC
Q 044999 356 REKVSGAIAQLSY 368 (461)
Q Consensus 356 ~~~a~~~L~~l~~ 368 (461)
+..+..++.....
T Consensus 292 ~~~~~~~l~~~~~ 304 (335)
T COG1413 292 RLEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHHhhcc
Confidence 6666555555544
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.27 E-value=0.0006 Score=63.60 Aligned_cols=252 Identities=23% Similarity=0.243 Sum_probs=176.9
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHH
Q 044999 97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVL 176 (461)
Q Consensus 97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 176 (461)
..++.+.+.+.+.++.++..++..+..+... ..++.+..++.+.++.+|..|..+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 3678888999988888888888775544422 25888999999999999999999776552
Q ss_pred HhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH------------HHHHHHHH
Q 044999 177 ICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW------------TTKLVAGN 243 (461)
Q Consensus 177 ~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~~~~~a~~ 243 (461)
....++.++.++. +.+..+|..+.++|+.+-. ...+..++..+.+... .++..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 2335788888888 5799999999999999833 3347777777776552 24444444
Q ss_pred HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 044999 244 TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLW 323 (461)
Q Consensus 244 ~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~ 323 (461)
.+..+. ....++.+...+.+.+..++..+..+|..+.... ..+.+.+...+.+.+..++..++..++
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---VEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 444432 2234678888888888899999999998887665 334477788888888999988888887
Q ss_pred HhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 044999 324 DLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAES 403 (461)
Q Consensus 324 ~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 403 (461)
.+-. ...++.+...+.+.+..++..+...+...-. ......+...+.+....++..+..+
T Consensus 239 ~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (335)
T COG1413 239 EIGD----------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRLEAALA 298 (335)
T ss_pred ccCc----------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHHHHHHH
Confidence 7743 2356667777887777666665554441110 1124555666666777777777777
Q ss_pred HHHhcCCCc
Q 044999 404 LINFSEDPL 412 (461)
Q Consensus 404 L~~l~~~~~ 412 (461)
+........
T Consensus 299 l~~~~~~~~ 307 (335)
T COG1413 299 LGQIGQEKA 307 (335)
T ss_pred HHhhcccch
Confidence 776665543
No 103
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00023 Score=66.17 Aligned_cols=243 Identities=13% Similarity=0.077 Sum_probs=171.9
Q ss_pred CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHH
Q 044999 168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTL 245 (461)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L 245 (461)
.++..+..+.-....+.+..++-+++.++|..+.++++.+..+.+.-..+.+.+.--.++.-+..+ +..=++.|+..+
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli 92 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI 92 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence 344444444444455556555555569999999999999999999888888887766777766643 445677899998
Q ss_pred HHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH-HHHH--HHHHHHhccCCHHHHHHHHHHH
Q 044999 246 GVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA-NAIA--EHLVRILREGDNEANAAAADVL 322 (461)
Q Consensus 246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~--~~l~~ll~~~~~~~~~~a~~~L 322 (461)
+.+...++.... ...|++..++.+..+.+...+..|..+|+.++..++.- .... ..+.+.+.++..+..+..+.++
T Consensus 93 R~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 93 RAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred HHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 888766433322 35678999999999999999999999999997654332 2222 7778777767666888999999
Q ss_pred HHhhCCCCchhHHhhcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHhccC
Q 044999 323 WDLAGYKHSVPVIRNSGAIPILVNLLRGE-------ND--EVREKVSGAIAQLSYNEADRVALADA--GAVPIMIELLHD 391 (461)
Q Consensus 323 ~~l~~~~~~~~~l~~~g~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~--~~i~~L~~ll~~ 391 (461)
..+-..|..+..+...--++.+..-+.+. +. +.-..+..++..+-++-..--.+... .++..|+..++.
T Consensus 172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence 99999999988887655566666555433 12 23344555566655532222223322 478999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCC
Q 044999 392 ESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 392 ~~~~~~~~a~~~L~~l~~~~ 411 (461)
++++++......+..+..-+
T Consensus 252 p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CCHHHHHHHHHHHHHHHCCC
Confidence 99999999999999886443
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.24 E-value=1.2e-05 Score=70.36 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=119.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCc---hhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCH
Q 044999 190 SFGSMVSRERACQAIGLLAVTG---RARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAI 264 (461)
Q Consensus 190 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i 264 (461)
.+.+++.|..++..|..+...+ .....+.+ ...+..+...+.+....+...|+.++..++..-...-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5568999999999999988776 22333333 246677778888778889999999999998762222111233568
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhh----c
Q 044999 265 PLYAELLQGPDSTGKEISEDVFCILAVSEANANAI-AEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRN----S 338 (461)
Q Consensus 265 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i-~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~----~ 338 (461)
|.|+..+.+....++..|..+|..+..+-.....+ .+.+...+.+.++.+|..++..+..+... +.....+-. .
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 99999999999999999999999998776633444 58888888999999999999999998854 312222222 3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
..++.+...+.+++++||..|-.++..+..
T Consensus 177 ~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 177 QLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999977
No 105
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.23 E-value=2.4e-06 Score=51.75 Aligned_cols=41 Identities=27% Similarity=0.522 Sum_probs=38.3
Q ss_pred ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 369 NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 369 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
+++++..+++.|++|.|++++++.+++++..|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.20 E-value=0.00024 Score=72.41 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=184.6
Q ss_pred CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC--CchhHHHHHhcCC
Q 044999 22 GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA--DGALATEIGQSGV 98 (461)
Q Consensus 22 ~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~ 98 (461)
.....|..|+..|..++ .-.....+.+++|-++.++.. .+.++|..|+.+|..+...- -...-..++....
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D------s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl 508 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD------SEADVRATALETLTELLALVRDIPPSDANIFPEYL 508 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC------chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence 35678999999999999 555555677799999999985 45668888999988887521 1233345556667
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHH
Q 044999 99 INSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLI 177 (461)
Q Consensus 99 l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 177 (461)
.|.|-.++.+ ....++..-|.++..|+... ..|.+.+.-.....+++..+.+ ..... ..+.....+.
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse-------t~~~~-~~~~~~~~L~ 576 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE-------TAPEQ-NYNTELQALH 576 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc-------ccccc-ccchHHHHHH
Confidence 8888888887 55667777888888888432 2222221111222233333322 00000 1111122222
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999 178 CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP 257 (461)
Q Consensus 178 ~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 257 (461)
+ ++-+....++.+..+-+++..+..|.-|+..-.-.+ .+.=.++.|+..|.+.++..|..-...+..++..-.-|
T Consensus 577 ~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-- 651 (1431)
T KOG1240|consen 577 H-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-- 651 (1431)
T ss_pred H-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence 2 233345566666677888887777777754322100 01125788999999999988887666666666542222
Q ss_pred hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~ 328 (461)
-++...+|.|.+-+.+.++.|...|+.+|..|....-.++..+ +.+..+|-.++.-+|..++.+|...+..
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 1344568999999999999999999999998876555444333 6777788888999999999999988754
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.011 Score=59.20 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=143.4
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 87 (461)
+...++.+++.+.+.|.++++..=.-+-+.+...+ +...-+++.+.+-+++ +++..+..|.+++..+-..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d------~N~~iR~~AlR~ls~l~~~--- 122 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQD------PNEEIRGFALRTLSLLRVK--- 122 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccC------CCHHHHHHHHHHHHhcChH---
Confidence 66667777777777777777765555555551111 2222388888888886 4566777688888777651
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 167 (461)
+. -...++.+.+++.++++.||+.|+.++.++-.-+ +..+.+.|....+..++.+.+|.+...|+.++..+.
T Consensus 123 el-----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 123 EL-----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HH-----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 11 1235788999999999999999999999888655 466778888999999999999999999999999887
Q ss_pred CChHHHHHHHh-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 168 LLREVRRVLIC-LGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 168 ~~~~~~~~~~~-~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
.. ........ ...++.+--..... .+..+..-+..|.......+. ... ....+.....+.++.+...++..
T Consensus 195 ~e-~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~-----~~~~~~~~~~~~n~~vl~~av~~ 268 (757)
T COG5096 195 PE-LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAED-----FEERLSPPLQHNNAEVLLIAVKV 268 (757)
T ss_pred hh-hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHH-----HHHhccchhhhCcHHHHHHHHHH
Confidence 33 11111111 00111111000111 123333333333333222222 222 23334445556677777777777
Q ss_pred HHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999 245 LGVVAAH-VEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 245 L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
+..+... +.+.-.. ..-+.+..++..+
T Consensus 269 i~~l~~~~~~~~~~~---~~~~~l~~Ll~~~ 296 (757)
T COG5096 269 ILRLLVFLPSNNLFL---ISSPPLVTLLAKP 296 (757)
T ss_pred HHHHhhhhccccHHH---hhccHHHHHHcCC
Confidence 7776655 3333111 1234556665554
No 108
>PRK14707 hypothetical protein; Provisional
Probab=98.12 E-value=0.0084 Score=65.19 Aligned_cols=424 Identities=16% Similarity=0.055 Sum_probs=234.7
Q ss_pred CHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHH
Q 044999 23 SEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVIN 100 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~ 100 (461)
+...+..+......++ ++..+..+.. .|..+++.+.. =.++++.+..+...-..++. +......+-..|+-.
T Consensus 178 ~~~c~~aa~~la~~~~~~d~~~~~~~~q~ia~~lNa~sK----Wp~~~~c~~aa~~la~~l~~--~~~l~~~~~~q~va~ 251 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDDRLRSAMDAQGVATVLNALCK----WPDTPDCGNAVSALAERLAD--ESRLRNELKPQELGN 251 (2710)
T ss_pred CchHHHHHHHHHHHhcCChhhhcccchHHHHHHHHHHhc----CCCChhHHHHHHHHHHHHcC--cHHHHHhCChHHHHH
Confidence 3444444444445555 4444444443 77777777775 33445566555444444554 555555553344444
Q ss_pred HHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHh
Q 044999 101 SVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLIC 178 (461)
Q Consensus 101 ~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~ 178 (461)
.|-.+.+-++..++..++..+. .++ .+...++.+-..+.-..|=.+-+-++..+...|...|.. +..+++.++.+-.
T Consensus 252 ~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~ 330 (2710)
T PRK14707 252 ALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNA 330 (2710)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccch
Confidence 4444455566666788887777 555 454556666555444444445566676666666655554 4466666654433
Q ss_pred cCCHHHHHHHH-cCCCHHHHHHHHHHH-HHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccch
Q 044999 179 LGGLRYLVEAV-SFGSMVSRERACQAI-GLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 179 ~~~l~~l~~~l-~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
.+ +...++.| +.++..+...+...| ..++.+.+.+..+-..|+-..|-.+-+ .+++.++..+...-..+..+.+.+
T Consensus 331 ~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~ 409 (2710)
T PRK14707 331 RG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELR 409 (2710)
T ss_pred HH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhh
Confidence 33 44444444 455555555555544 456665555666554444333333434 334445544444445677778888
Q ss_pred hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHHHH-HHHHHHhc----cC-CHHHHHHHHHHHHHhhCC
Q 044999 256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANAIA-EHLVRILR----EG-DNEANAAAADVLWDLAGY 328 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~-~~l~~ll~----~~-~~~~~~~a~~~L~~l~~~ 328 (461)
..+-..|+-..|-.+-+.++..+...++..|.-- +.+.+-+..+. ..+.+.|+ =+ +|.....+-.....|+..
T Consensus 410 ~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~ 489 (2710)
T PRK14707 410 KGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHE 489 (2710)
T ss_pred hhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhccc
Confidence 8887777666666666777888877777777644 55555555554 33444442 12 344444444445566655
Q ss_pred CCchhHHhhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHH
Q 044999 329 KHSVPVIRNSGAIPILVNLLRGEN-DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAAESLIN 406 (461)
Q Consensus 329 ~~~~~~l~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~ 406 (461)
++.++.+--.++...|-.+-+-++ +.....+.++-..+.........|...+ +..++.-+ +.++......+...|..
T Consensus 490 ~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 490 RRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred HHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 555444444344444444444444 3334444455555554444333333333 33344434 44555555555555655
Q ss_pred hc-CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCCC
Q 044999 407 FS-EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPDL 461 (461)
Q Consensus 407 l~-~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 461 (461)
+. .++.-++.| ....+..+++.+.+|.+ ....++.+.....++..+|++
T Consensus 569 ~l~~~~~~~~~L----~aq~Vs~llNaLSKWP~--~~aC~~Aa~~LA~~l~~~~~l 618 (2710)
T PRK14707 569 RLADEPQLPKDL----HRQGVVIVLNALSKWPD--TAVCAEAVNALAERLVDEPDL 618 (2710)
T ss_pred HhhcchhhHHhh----hhhHHHHHHHhhccCCC--cHHHHHHHHHHHHHhccChhh
Confidence 43 333333333 45667788888989884 677888888888888887764
No 109
>PRK14707 hypothetical protein; Provisional
Probab=98.11 E-value=0.018 Score=62.74 Aligned_cols=349 Identities=14% Similarity=0.068 Sum_probs=193.6
Q ss_pred HHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHhc
Q 044999 102 VLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLICL 179 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~ 179 (461)
|-.+-+-++..+...++..+. .|. ++++.++.+-..+.-..|=.+-+-++..+...|...|.. ++.+++.+..+--.
T Consensus 295 lNalSKwpd~~vc~~Aa~~la~rl~-~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q 373 (2710)
T PRK14707 295 LNALSKWADLPVCAEAAIALAERLA-DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ 373 (2710)
T ss_pred HhhhhcCCCchHHHHHHHHHHHHHh-ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh
Confidence 333445677777888887777 455 566666666555544444445556666666666666655 44777777665544
Q ss_pred CCHHHHHHHH-cCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHH-HHHhcCccchh
Q 044999 180 GGLRYLVEAV-SFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL-GVVAAHVEYIT 256 (461)
Q Consensus 180 ~~l~~l~~~l-~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L-~~l~~~~~~~~ 256 (461)
++...++.+ +.++......+...|. .+..+.+.++.|-..|+-..|-.+-+=++..+...++..| ..++.+.+.+.
T Consensus 374 -~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~ 452 (2710)
T PRK14707 374 -GVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK 452 (2710)
T ss_pred -HHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh
Confidence 455555555 4556566666666665 4554444477666666555555555555555555555555 44566577777
Q ss_pred hhhhcCCHHHHHHHhCCCChhHHHHHHHHHH-HhccCcccHHHHH-HHHHHHhc----cCC-HHHHHHHHHHHHHhhCCC
Q 044999 257 PVAEAGAIPLYAELLQGPDSTGKEISEDVFC-ILAVSEANANAIA-EHLVRILR----EGD-NEANAAAADVLWDLAGYK 329 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~-~~l~~ll~----~~~-~~~~~~a~~~L~~l~~~~ 329 (461)
.+-..++...|-.+-+.++..+...++..|. .|+...+-++.+- ..+...|+ -++ +...+.+.++-..+....
T Consensus 453 ~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~ 532 (2710)
T PRK14707 453 ALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL 532 (2710)
T ss_pred hcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch
Confidence 6666665555555666777666665665554 4566555444444 33333332 222 333334444444444333
Q ss_pred CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-C-CHHHHHHHHHHHHH
Q 044999 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-E-SEELRDNAAESLIN 406 (461)
Q Consensus 330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~-~~~~~~~a~~~L~~ 406 (461)
.....+...+....+-.+.+.++......+...|..+.. .+..+..+- ...|..++..+.. + .+..+..+.+.-..
T Consensus 533 ~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~ 611 (2710)
T PRK14707 533 QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAER 611 (2710)
T ss_pred hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHH
Confidence 333332322223333333444444555555555665544 444444443 4457888887743 4 44455555555555
Q ss_pred hcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCC
Q 044999 407 FSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDP 459 (461)
Q Consensus 407 l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 459 (461)
+...+.-+..+ ....+.+.++.+.+|.+ ++..+..+..+.+.+.-+|
T Consensus 612 l~~~~~lr~~l----~~q~lan~lNALSKWP~--s~~C~~Aa~rLA~rl~~~~ 658 (2710)
T PRK14707 612 LVDEPDLRKEL----DPVDVTNVLNALSKWPG--TEVCAEVARLLAGRLVGDR 658 (2710)
T ss_pred hccChhhhhhc----cHHHHHHHHhhhhcCCC--chHHHHHHHHHHHHhhhch
Confidence 55544433333 55677888888888884 4566666666555554443
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.10 E-value=0.00076 Score=64.80 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=167.6
Q ss_pred HHHHHHHHhcCCchhHHHHHhcCCHHHHHhcC----------CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH
Q 044999 75 AYCLKQIASQADGALATEIGQSGVINSVLRLF----------PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV 144 (461)
Q Consensus 75 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll----------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L 144 (461)
+.+|.-++. +....+.+....++..|.++- ...++.+...|.+||+|....++..|..+.+.|+.+.+
T Consensus 2 L~~LRiLsR--d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSR--DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHcc--CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 345555666 555555666656666666554 35578889999999999999999999999999999999
Q ss_pred HHHhcCC-----ChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHHcCC-----------------CHHHHHHH
Q 044999 145 IDLLNSC-----NDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAVSFG-----------------SMVSRERA 200 (461)
Q Consensus 145 ~~ll~~~-----~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l~~~-----------------~~~~~~~a 200 (461)
++.++.. +.++.....+.|.-++ ...+.+..+++. +++..+...+... +......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 6788889999998888 677778777765 6777776655421 23456788
Q ss_pred HHHHHHhhcCchhHHHHHhcCChHHHHHhcc---------cCCHHHHHHHHHHHHHHhcC-ccc-------hhh----hh
Q 044999 201 CQAIGLLAVTGRARRLLVELGVIPGLVELFH---------IGDWTTKLVAGNTLGVVAAH-VEY-------ITP----VA 259 (461)
Q Consensus 201 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~-~~~-------~~~----~~ 259 (461)
++.+.|+..+.+....=.....++.++.++. .+......+++.+|.|+-.. ... ... ..
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8999999877665221111223444444332 12345677888888887322 000 111 11
Q ss_pred hcCCHHHHHHHhCCC-----C---hhHHHHHHHHHHHhccCc-ccHHHHH---------------------HHHHHHhcc
Q 044999 260 EAGAIPLYAELLQGP-----D---STGKEISEDVFCILAVSE-ANANAIA---------------------EHLVRILRE 309 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~-----~---~~~~~~a~~~L~~l~~~~-~~~~~i~---------------------~~l~~ll~~ 309 (461)
....+..|+.+|... + .+.....+.+|.+++... ..+..+- ..|++++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 123456666666421 1 134445556677775543 3333322 889999998
Q ss_pred CCHHHHHHHHHHHHHhhCC
Q 044999 310 GDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 310 ~~~~~~~~a~~~L~~l~~~ 328 (461)
..+.++..+...|+.||..
T Consensus 320 ~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCchHHHHHHHHHHHHHhh
Confidence 8899999999999999853
No 111
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0027 Score=58.15 Aligned_cols=242 Identities=17% Similarity=0.105 Sum_probs=176.0
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC------hH----HHHHHHhcCCHHHHHHHHcCCCHHH
Q 044999 127 FGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL------RE----VRRVLICLGGLRYLVEAVSFGSMVS 196 (461)
Q Consensus 127 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~------~~----~~~~~~~~~~l~~l~~~l~~~~~~~ 196 (461)
..|+.-..+++.++++.|+++|++.+.++....+..+..++.. .+ ....+++.++++.|++-+..-++.+
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv 192 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV 192 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc
Confidence 5567777889999999999999999999999999999988721 12 2345666788999988876544433
Q ss_pred ------HHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHH
Q 044999 197 ------RERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPL 266 (461)
Q Consensus 197 ------~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~ 266 (461)
....+..+-|+....+. ...+++.|.+..|+.-+.. .-......|...|.-+-.+ .+++..+..-.++..
T Consensus 193 keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~ 272 (536)
T KOG2734|consen 193 KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDV 272 (536)
T ss_pred hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHH
Confidence 45677788888888877 8888888999888885552 3455677888888888777 557877777788888
Q ss_pred HHHHhC---CC------ChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCC---C
Q 044999 267 YAELLQ---GP------DSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGYK---H 330 (461)
Q Consensus 267 L~~ll~---~~------~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~---~ 330 (461)
+++-+. .. ..+..++...+||.+...++++..+. -.+..++-......+..++++|-....++ +
T Consensus 273 lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 273 LLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred HHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchH
Confidence 887652 22 24677888889999999999999888 44555554445566778888998888765 4
Q ss_pred chhHHhhcCCHHHHHHhhc-CCC---------HHHHHHHHHHHHHhcC
Q 044999 331 SVPVIRNSGAIPILVNLLR-GEN---------DEVREKVSGAIAQLSY 368 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~-~~~---------~~v~~~a~~~L~~l~~ 368 (461)
++..+++.+++..+..+.. .+. .+.-+..+..|+.+-.
T Consensus 353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 6777888888877776654 222 2344455555555544
No 112
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.016 Score=59.11 Aligned_cols=333 Identities=14% Similarity=0.054 Sum_probs=184.8
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQAD 86 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~ 86 (461)
.|..++.+.+.+++.|..+|=-|++.++.+++--+.....++|...++++.. .++ + .-.| ++.+|+.|+..|-
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p----~e~-~-~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNP----AED-D-SAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCc----CCc-h-hHHHHHHHHHHHHHhcCC
Confidence 5567778888888999999999999999999333344444488999986664 442 2 3444 8899999998542
Q ss_pred chhHHHHHhcCCHHHHHhcCC--------CCCHHHHHHHHHHHHHHhccChhh--HHHHHHcCCHHHHHHHhcCCChHHH
Q 044999 87 GALATEIGQSGVINSVLRLFP--------QSDDSFRTVLVKCLRVFVTFGNEN--RVIVARNGGLEIVIDLLNSCNDGTR 156 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~ 156 (461)
--.. . -..+++.+++.|. +....+|..+++.++.++...... +. +...=.-..++..+-+.+-++|
T Consensus 413 Llps-~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPS-L--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchH-H--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHh
Confidence 1110 0 1124566665554 234567999999999888643222 22 2111112223334455666888
Q ss_pred HHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHH-hhcCchhHHHHHhcCChHHHHHh-cc
Q 044999 157 RYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGL-LAVTGRARRLLVELGVIPGLVEL-FH 231 (461)
Q Consensus 157 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~l-l~ 231 (461)
..|..++.... .+.|-.|.=+.++.+. +...|..+...+.. ++..+..+..+ +..++.. +.
T Consensus 489 RAAsAAlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 489 RAASAALQENV---------GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVC 554 (1133)
T ss_pred HHHHHHHHHHh---------ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccc
Confidence 88888876543 2222222112222222 22334443333332 22222222222 2222222 34
Q ss_pred cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc---------HHHHH--
Q 044999 232 IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN---------ANAIA-- 300 (461)
Q Consensus 232 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------~~~i~-- 300 (461)
+=+..+++.++.+|.+|+.. .......+.++.++....+.+...+.-+..+.+.+...... ...+.
T Consensus 555 HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l 631 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGL 631 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhh
Confidence 45789999999999998865 22233445678888888778877776655554444221111 11111
Q ss_pred -----HHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 301 -----EHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 301 -----~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+...+.+..+ ..-.+...+..+.+++.+ ..........+.-..+.+.+..++ .++..+.+++..++.
T Consensus 632 ~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 632 LSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 2222222222 234455666777777744 333444444455555555664444 677777777777665
No 113
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0057 Score=60.16 Aligned_cols=279 Identities=17% Similarity=0.110 Sum_probs=173.9
Q ss_pred HHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChh
Q 044999 51 PILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNE 130 (461)
Q Consensus 51 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~ 130 (461)
..|..+|.+ ..+ .....|+.-+..+.-. .+..... .+..|+...+.+.++++..-.-+...++.+++
T Consensus 38 ~dL~~lLdS----nkd--~~KleAmKRIia~iA~-G~dvS~~------Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDS----NKD--SLKLEAMKRIIALIAK-GKDVSLL------FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhc----ccc--HHHHHHHHHHHHHHhc-CCcHHHH------HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence 567788876 333 2333455554444443 3333333 37788888889999888777667777754432
Q ss_pred hHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 044999 131 NRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT 210 (461)
Q Consensus 131 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~ 210 (461)
.. .=.+..+-+-|+++++.+|..|+++|..+= -.++..=.+-.+-+...+.++-+|..|+.++-.|-+-
T Consensus 105 LA-----LLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 105 LA-----LLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred ce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 21 113777888999999999999999998762 2222221233344555677889999999999999877
Q ss_pred chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 211 GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 211 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
++.... ..+..+-.+|.+.++.+.-.|+.+...+|-+ +-.++ ++-...++.++.+-+.--|...+.+|..-+
T Consensus 174 d~e~k~----qL~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 174 DPEQKD----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred ChhhHH----HHHHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 776332 1356666788888898888888888877743 22222 122455666665544433444444443332
Q ss_pred cCc----------------------------------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999 291 VSE----------------------------------ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR 336 (461)
Q Consensus 291 ~~~----------------------------------~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 336 (461)
.+. ..-..+.+..-.+|.+.++.+..+++++.+.++-..+
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------ 319 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------ 319 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------
Confidence 110 0011111334456678899999999999999985321
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
...+++.|+++|.+ +..+|...+..+..++.
T Consensus 320 ~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 320 VTKIAKALVRLLRS-NREVQYVVLQNIATISI 350 (968)
T ss_pred HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHh
Confidence 23457789998876 45566666666666665
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.04 E-value=0.0021 Score=61.86 Aligned_cols=125 Identities=18% Similarity=0.062 Sum_probs=90.9
Q ss_pred cChhhHHHHHHcCCHHHHHHHh----------cCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC---
Q 044999 127 FGNENRVIVARNGGLEIVIDLL----------NSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG--- 192 (461)
Q Consensus 127 ~~~~~~~~~~~~g~i~~L~~ll----------~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~--- 192 (461)
.++.+...+....++..|.++- ...++.+...|+++|+|+. .++..|+.+.+.|+.+.+++.++..
T Consensus 10 Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~ 89 (446)
T PF10165_consen 10 RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS 89 (446)
T ss_pred cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc
Confidence 3334555555555566666654 3456789999999999999 7888999999999999999999877
Q ss_pred --CHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhccc-----------------CCHHHHHHHHHHHHHHhcC
Q 044999 193 --SMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHI-----------------GDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 193 --~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~ 251 (461)
+.++.-...+.|.-++..... +..+.+ .+++..+...+.. .+......++..+.|+..+
T Consensus 90 ~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~ 169 (446)
T PF10165_consen 90 SQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLH 169 (446)
T ss_pred CCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhc
Confidence 678889999999888876665 555544 5777777765541 1223455667777787766
No 115
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=98.02 E-value=0.0017 Score=59.28 Aligned_cols=266 Identities=14% Similarity=0.142 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhh-c-CCCchh-H---HHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCC
Q 044999 25 ALQVKALTKLARV-S-KFAPQD-I---LAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGV 98 (461)
Q Consensus 25 ~~~~~a~~~l~~l-a-~~~~~~-~---l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 98 (461)
++++.+...+..+ . ....++ . +.+.+..+-..|.. +++.+-+... ...|+. .+...+.
T Consensus 14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G-----~~e~ep~~e~---v~qLa~--------Ei~~~dl 77 (335)
T PF08569_consen 14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYG-----DGEPEPNPEQ---VAQLAQ--------EIYRSDL 77 (335)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS------SS----HHH---HHHHHH--------HHHHHTH
T ss_pred HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcC-----CCCCCCCHHH---HHHHHH--------HHHHhCH
Confidence 5566666777777 2 222222 2 22256666666663 3333333332 344444 5667788
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH-----HHHHH--cCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChH
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR-----VIVAR--NGGLEIVIDLLNSCNDGTRRYLLEILSALALLRE 171 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 171 (461)
+..|+..|..-+.+.++.++..+.++.......+ ..+.. ...+..|+...+ ++++...+-..|..+..++.
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHH
Confidence 9999999999999989988888887776433332 12222 123333333333 55677888889999999999
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhc---CChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999 172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVEL---GVIPGLVELFHIGDWTTKLVAGNTLGV 247 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~~L~~ 247 (461)
..+.+.....+..+++..+.++-++...|..++..+-..++. ...+... .++.....++.+++--+++.++..|+.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 999999998999999999999999999999999986655544 4444442 456777889999999999999999999
Q ss_pred HhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------HHHHHHhc
Q 044999 248 VAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------EHLVRILR 308 (461)
Q Consensus 248 l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~~l~~ll~ 308 (461)
+-.+..+...+.+ ..-+..++.+|++.+..++..|--++.-+..+|.....+. +.|+..+.
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~ 307 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLK 307 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHH
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9988666554332 3457778888999999999999988888866665433332 55666553
No 116
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.01 E-value=1.8e-05 Score=47.89 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=38.1
Q ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999 169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV 209 (461)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 209 (461)
+++++..+++.|+++.|+.++.+.+++++..|+++|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999974
No 117
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.00 E-value=0.00048 Score=60.18 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=148.9
Q ss_pred HHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchhHHHHHh-cC
Q 044999 146 DLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRARRLLVE-LG 221 (461)
Q Consensus 146 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~ 221 (461)
+++++-++-.+..|++++.++...++.|..+.. ..+-.++++.+++. +.++|...+-+++.++.++...+.+-. ..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455667888999999999988888876654 44677888888876 568999999999999999887644333 33
Q ss_pred ChHHHHHhcccC-CHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHh-CC--CChhHHHHHHH---HHHH----
Q 044999 222 VIPGLVELFHIG-DWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELL-QG--PDSTGKEISED---VFCI---- 288 (461)
Q Consensus 222 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll-~~--~~~~~~~~a~~---~L~~---- 288 (461)
.+..++.+.+.. ...+.+.++..+.|++.. ...-..+.-.|-+...++.+ .. .+++++...-. .|.+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 566777777643 556777888889998873 22222333333233344444 32 25554322111 1110
Q ss_pred hccCcc------------------------cHHHHH-------HHHHHHhccCCHH-HHHHHHHHHHHhh-CCCCchhHH
Q 044999 289 LAVSEA------------------------NANAIA-------EHLVRILREGDNE-ANAAAADVLWDLA-GYKHSVPVI 335 (461)
Q Consensus 289 l~~~~~------------------------~~~~i~-------~~l~~ll~~~~~~-~~~~a~~~L~~l~-~~~~~~~~l 335 (461)
++..+. +..++. ..|.+++++..+. ....|+.-+..+. ..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 111111 111221 7777888877665 4556777777777 569999999
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
.+.|+-+.+++++++++++|+-.|+.++..+.
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 118
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.007 Score=55.57 Aligned_cols=252 Identities=12% Similarity=0.121 Sum_probs=178.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-----Chhh----HHHHHHcCCHHHH
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-----GNEN----RVIVARNGGLEIV 144 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-----~~~~----~~~~~~~g~i~~L 144 (461)
..+-+.-++. -+.....+++.++++.|+++|.+.|.++.......+..++.. +.+. -..+++.++++.|
T Consensus 104 ~IQ~mhvlAt--~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLAT--MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhc--ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 6677777887 677778888999999999999999999877777777777652 2222 3455678888888
Q ss_pred HHHhcCCCh------HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCch-hH
Q 044999 145 IDLLNSCND------GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGR-AR 214 (461)
Q Consensus 145 ~~ll~~~~~------~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~-~~ 214 (461)
++-++.-++ .-...++..+-|+. ..++....+++.|.+..|+.-+... -..-...|..++.-+..+.+ ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 887654443 33455677888888 6677788888888888777744433 23556788888888777776 47
Q ss_pred HHHHhcCChHHHHHhcc---cC------CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999 215 RLLVELGVIPGLVELFH---IG------DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285 (461)
Q Consensus 215 ~~~~~~~~i~~L~~ll~---~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 285 (461)
......+++..+++-+. .. ..+..+....+|+.+-..+.++..+....++....-+++. ....+..++++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 77888889998888765 22 2456778888888888889999999998778776666665 55667788889
Q ss_pred HHHhccCccc---HHHHH-----HHHHHHh-ccC---------CHHHHHHHHHHHHHhhCC
Q 044999 286 FCILAVSEAN---ANAIA-----EHLVRIL-REG---------DNEANAAAADVLWDLAGY 328 (461)
Q Consensus 286 L~~l~~~~~~---~~~i~-----~~l~~ll-~~~---------~~~~~~~a~~~L~~l~~~ 328 (461)
|-....+++. +..++ ..+...+ +.+ ..+.-+..+.+|+.+-.+
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 9888777664 43433 3333332 222 234556777777777643
No 119
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.91 E-value=0.021 Score=54.80 Aligned_cols=339 Identities=14% Similarity=0.084 Sum_probs=186.9
Q ss_pred HHHHHHHhhcCCH---HHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 12 FNRFEQAVVSGSE---ALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 12 ~~~l~~ll~~~~~---~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
+|.+...+.+.+. ........+|..++ +...-+.+.. .+..+-...+. +. +.+.-...+.+|..+.....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~----~~-~~~~~~~il~tl~~~~~~~~ 75 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQS----ES-SSDYCHAILSTLQSLLEKKQ 75 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHHHHhcc
Confidence 3566777776654 56777888899998 5544333322 55555555553 22 44455668888888876421
Q ss_pred chh----HHHHHhcCCHHHHHhcCC-----CC--CHHHHHHHHHHHHHHhc-cChhhHHHHHHcCCHHHHHH-----Hh-
Q 044999 87 GAL----ATEIGQSGVINSVLRLFP-----QS--DDSFRTVLVKCLRVFVT-FGNENRVIVARNGGLEIVID-----LL- 148 (461)
Q Consensus 87 ~~~----~~~~~~~~~l~~L~~ll~-----~~--~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~g~i~~L~~-----ll- 148 (461)
... -....+...++.+.++.- .. ++.+...++..+..+.. -+.+.++.+.+ .....+.. -+
T Consensus 76 ~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 76 EDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-ELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHccccccCCCC
Confidence 111 122223336666665542 11 24444555555554443 23333444422 12222220 00
Q ss_pred -cCC-----ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999 149 -NSC-----NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELG 221 (461)
Q Consensus 149 -~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (461)
... ......-...++..+-.+-... .. ...+..++.+..+. ++..+..++.+++.+....+....+- .
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--~ 229 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--E 229 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--H
Confidence 000 0111112223333333211111 11 12566677766544 67889999999998887643322111 1
Q ss_pred ChHHHHHhc-ccCCHHHHHHHHHHHHHHhcC-----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cc
Q 044999 222 VIPGLVELF-HIGDWTTKLVAGNTLGVVAAH-----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EA 294 (461)
Q Consensus 222 ~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 294 (461)
.+..+...+ ...+...+..+...+..++.. .+... ..+..|++++.+ +++...++..+.-+..+ ++
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~ 302 (415)
T PF12460_consen 230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDD 302 (415)
T ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH
Confidence 334444333 233344444444444444332 22222 236778888876 67777888888877555 32
Q ss_pred c-------------HHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh-hcCCHHHHHHhhcCCCHHHH
Q 044999 295 N-------------ANAIA----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR-NSGAIPILVNLLRGENDEVR 356 (461)
Q Consensus 295 ~-------------~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~v~ 356 (461)
. ++++. |.+++..+..+.+.+...+.+|.++..+-...-.+- -...+|.|++-|..++++++
T Consensus 303 ~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~ 382 (415)
T PF12460_consen 303 VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVL 382 (415)
T ss_pred hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 2 22332 788888888777788899999999987633221211 23478999999999999999
Q ss_pred HHHHHHHHHhcC
Q 044999 357 EKVSGAIAQLSY 368 (461)
Q Consensus 357 ~~a~~~L~~l~~ 368 (461)
..++.+|..+..
T Consensus 383 ~s~L~tL~~~l~ 394 (415)
T PF12460_consen 383 LSSLETLKMILE 394 (415)
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 120
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0024 Score=67.05 Aligned_cols=298 Identities=13% Similarity=0.076 Sum_probs=155.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHH-HHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHH
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIV-ARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRV 175 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~ 175 (461)
...+...+.+++|..|...+..+..+...-...+... ....+..++..+|.+.|+-+|..|.+.++-+- .+.+.++.
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHH
Confidence 3445567788899887776655554443221111111 12223477888888877766666665444332 22222222
Q ss_pred HHh------------------------cC---------CHHH---HH----------------HHHcCC-CHHHHHHHHH
Q 044999 176 LIC------------------------LG---------GLRY---LV----------------EAVSFG-SMVSRERACQ 202 (461)
Q Consensus 176 ~~~------------------------~~---------~l~~---l~----------------~~l~~~-~~~~~~~a~~ 202 (461)
+++ .| .+.+ |+ ++-+|. .+.-+..|+.
T Consensus 900 LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAf 979 (1702)
T KOG0915|consen 900 LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAF 979 (1702)
T ss_pred HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhh
Confidence 221 11 1111 11 111111 2223344444
Q ss_pred HHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHH
Q 044999 203 AIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEIS 282 (461)
Q Consensus 203 ~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a 282 (461)
-++.++.....+..-.-...+|.|...=-+++..++..-......|..++..-..-.-..++.-|+.-+.+..+.+|+.+
T Consensus 980 Gf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReas 1059 (1702)
T KOG0915|consen 980 GFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREAS 1059 (1702)
T ss_pred chHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 44555444333111111236777777777888888875554444444332221111123557778888888899999999
Q ss_pred HHHHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHH---HHHHHHhhC---CC---CchhHHhhcCCHHHHHHh
Q 044999 283 EDVFCILAVSEANANAIA------EHLVRILREGDNEANAAA---ADVLWDLAG---YK---HSVPVIRNSGAIPILVNL 347 (461)
Q Consensus 283 ~~~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a---~~~L~~l~~---~~---~~~~~l~~~g~i~~L~~l 347 (461)
+.+|..|-...+.....- ..+.+.+.+-.+.+|+.| +.+|..++. +. .....+. ..++|.|++-
T Consensus 1060 clAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDE 1138 (1702)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhcc
Confidence 999999977666543332 344444444456677644 555555552 11 1111111 1244554431
Q ss_pred -hcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHH
Q 044999 348 -LRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELR 397 (461)
Q Consensus 348 -l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 397 (461)
..+.-++++..++.++..|+.+....-.-.-...+|.|++....-.+.+.
T Consensus 1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHH
Confidence 12456889999999999999843321111112357777777755444443
No 121
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0055 Score=59.95 Aligned_cols=320 Identities=9% Similarity=0.078 Sum_probs=197.3
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
-.|..+|.+...+++....||++|..+++.+. + -+.+.. +-..+-+.|. .+.||...|.|...|...-.
T Consensus 131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDapeLi~~fL~-----~e~DpsCkRNAFi~L~~~D~- 201 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDAPELIESFLL-----TEQDPSCKRNAFLMLFTTDP- 201 (948)
T ss_pred HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCChHHHHHHHHH-----hccCchhHHHHHHHHHhcCH-
Confidence 36677788888888899999999988888777 3 111222 3333445555 34567788877665555443
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
+..... +..-+.-..+-++..+......++..+..++.-+..+ +.-+..+|.+.++.++..|..+|.
T Consensus 202 --ErAl~Y------l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv 268 (948)
T KOG1058|consen 202 --ERALNY------LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLV 268 (948)
T ss_pred --HHHHHH------HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEE
Confidence 111111 1111222334456667777777777776565554444 556888999999999999999999
Q ss_pred HhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHH
Q 044999 165 ALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGN 243 (461)
Q Consensus 165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 243 (461)
.++.++..-..- ...+++++... +-.++...+.-|..+...+ ...+ .|.+--++..+.+++-+++..++.
T Consensus 269 ~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~--~~il--~~l~mDvLrvLss~dldvr~Ktld 339 (948)
T KOG1058|consen 269 TLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALH--EKIL--QGLIMDVLRVLSSPDLDVRSKTLD 339 (948)
T ss_pred EccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhh--HHHH--HHHHHHHHHHcCcccccHHHHHHH
Confidence 998777665443 33455555333 3345555555555554211 2222 235666778888999999999988
Q ss_pred HHHHHhcCccchhhhhhcCCHHHHHH-HhCC------CChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHH
Q 044999 244 TLGVVAAHVEYITPVAEAGAIPLYAE-LLQG------PDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEAN 315 (461)
Q Consensus 244 ~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~------~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~ 315 (461)
....|..+.+.. .+ +..|.. +.+. .+...|..-..++...+ ..++....+++.+++.+.+.++..-
T Consensus 340 i~ldLvssrNve-di-----v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aa 413 (948)
T KOG1058|consen 340 IALDLVSSRNVE-DI-----VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAA 413 (948)
T ss_pred HHHhhhhhccHH-HH-----HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHH
Confidence 887777652221 11 112211 1111 23456777888888885 5566777777999999999988766
Q ss_pred HHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 044999 316 AAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 316 ~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 368 (461)
...+..+.... ..|..+..++. .|++-+. -.+..+-+.++|.++.-|.
T Consensus 414 s~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 414 SDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhHHHHHHHHHh
Confidence 66666666555 34555444443 3333332 1345567788888888887
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.00028 Score=61.78 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHHHHHhccC--hhhHHHHHHc--CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCH
Q 044999 107 PQSDDSFRTVLVKCLRVFVTFG--NENRVIVARN--GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGL 182 (461)
Q Consensus 107 ~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 182 (461)
++.++..+..+...+..+...+ ......+.+. ..+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678888999999999887655 2222333221 34556666677667788899999999988322221111123478
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhh
Q 044999 183 RYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAE 260 (461)
Q Consensus 183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~ 260 (461)
+.|+..+.+....++..|..+|..+...... ... ..+.+...+.+.++.++..++..+..+... +.....+-.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 9999999999999999999999999887662 221 156677778899999999999999888766 312222222
Q ss_pred ----cCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 261 ----AGAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 261 ----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
..+++.+...+.+.++++|..|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 2357778888889999999988888887743
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.80 E-value=8.7e-05 Score=53.88 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=68.0
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999 182 LRYLVEAV-SFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE 260 (461)
Q Consensus 182 l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 260 (461)
++.|++.+ +++++.+|..++.+|+++- ....++.|+.+++++++.++..|+.+|+.+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57788988 7889999999999999551 2235899999999999999999999999873 2
Q ss_pred cCCHHHHHHHhCCC-ChhHHHHHHHHHH
Q 044999 261 AGAIPLYAELLQGP-DSTGKEISEDVFC 287 (461)
Q Consensus 261 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~ 287 (461)
...++.|.+++.++ +..++..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34689999998876 4556887777763
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.045 Score=53.93 Aligned_cols=278 Identities=14% Similarity=0.128 Sum_probs=146.9
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCChHHHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLREVRRVL 176 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 176 (461)
.+|.+...|.+..+.||+.|..++..+-... ..+ --++.+.+-. +....|+..++.|.-.|...- ++..-.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~----~~L-~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D--~ErAl~- 206 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF----EHL-IPDAPELIESFLLTEQDPSCKRNAFLMLFTTD--PERALN- 206 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhh----hhh-cCChHHHHHHHHHhccCchhHHHHHHHHHhcC--HHHHHH-
Confidence 4566667777778888888777776444211 001 1112223333 334567777777776665432 111100
Q ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchh
Q 044999 177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYIT 256 (461)
Q Consensus 177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 256 (461)
.+..-+.-..+-++.++......+...+...+..+ ...++.+..+|.+.++.++..|+.+|.+++.++..-.
T Consensus 207 ----Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk 278 (948)
T KOG1058|consen 207 ----YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK 278 (948)
T ss_pred ----HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH
Confidence 01111122223345566666666666665544411 1246778888887777888777777777776644333
Q ss_pred hhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999 257 PVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPV 334 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 334 (461)
.. ...+++++... +-.++.-.+.-|..+. .+...-..++-.++..|.+++-+++..++.+...|+..... ..
T Consensus 279 ~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv-ed 352 (948)
T KOG1058|consen 279 AA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV-ED 352 (948)
T ss_pred HH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH-HH
Confidence 22 34455554322 3333333333333332 11111122224455666778888999998888888765322 11
Q ss_pred HhhcCCHHHHHHh-hc------CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999 335 IRNSGAIPILVNL-LR------GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN 406 (461)
Q Consensus 335 l~~~g~i~~L~~l-l~------~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 406 (461)
++ ..|..- .+ +.+...|..-.+++..++. .|+.... .++.|++.+.+.++.........+..
T Consensus 353 iv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 353 IV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred HH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 11 112111 11 1234467777888888887 6764443 37778888877666654444444443
Q ss_pred h
Q 044999 407 F 407 (461)
Q Consensus 407 l 407 (461)
.
T Consensus 423 ~ 423 (948)
T KOG1058|consen 423 A 423 (948)
T ss_pred H
Confidence 3
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.79 E-value=8.9e-05 Score=53.84 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=68.8
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999 141 LEIVIDLL-NSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE 219 (461)
Q Consensus 141 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 219 (461)
++.|++.+ ++.++.+|..++.+|..+. ....++.++.+++++++.+|..++.+|+.+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57788888 8889999999999998552 1134889999999999999999999999882 3
Q ss_pred cCChHHHHHhcccC-CHHHHHHHHHHHH
Q 044999 220 LGVIPGLVELFHIG-DWTTKLVAGNTLG 246 (461)
Q Consensus 220 ~~~i~~L~~ll~~~-~~~~~~~a~~~L~ 246 (461)
...++.|.+++.++ +..++..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44889999988865 5556888887764
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.016 Score=55.20 Aligned_cols=286 Identities=15% Similarity=0.118 Sum_probs=164.9
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
..|.|-..++. .-..++..++++++.++.. + ......+ ..+..|-.+|++.+...|-.|.+.+..++...
T Consensus 265 ~rpfL~~wls~------k~emV~lE~Ar~v~~~~~~-n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 265 LRPFLNSWLSD------KFEMVFLEAARAVCALSEE-N--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHhcC------cchhhhHHHHHHHHHHHHh-c--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 33444455553 2234777788888888874 2 1111111 13566777788888877888888888777644
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
|+- ... .-+.+-.+..+.+..+-..|+..|..-. .+++...+ +..+..+..+-+...+..+..++..|+
T Consensus 335 P~k-v~v----cN~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLs 403 (898)
T COG5240 335 PQK-VSV----CNKEVESLISDENRTISTYAITTLLKTG-TEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLS 403 (898)
T ss_pred Cce-eee----cChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHH
Confidence 321 111 1122344556666667777777665543 23333332 233344444445566667777777777
Q ss_pred cCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999 209 VTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285 (461)
Q Consensus 209 ~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 285 (461)
..-+. +..+ +..|...|. .+.-+.+..++.++..+..+ |+.++.. +..|+..+.+. +..+-+..+
T Consensus 404 l~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrI 471 (898)
T COG5240 404 LLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRI 471 (898)
T ss_pred hhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHH
Confidence 76666 3332 344444333 45667777777787777666 5666655 56677776544 333344455
Q ss_pred HHHhccCcc---cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999 286 FCILAVSEA---NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362 (461)
Q Consensus 286 L~~l~~~~~---~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~ 362 (461)
|.-|....+ .....+.++.+-+--.+.-+|..|+.+|..++-+.+.. .....+...|.+.+.+.++++|..|..+
T Consensus 472 L~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 472 LGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred HHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 555532211 11222234444333456678889999998887542211 1112234567788999999999999999
Q ss_pred HHHhcCC
Q 044999 363 IAQLSYN 369 (461)
Q Consensus 363 L~~l~~~ 369 (461)
+.++-..
T Consensus 550 l~~~~~~ 556 (898)
T COG5240 550 LRNMRLS 556 (898)
T ss_pred HHhhhhh
Confidence 9988753
No 127
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.63 E-value=0.0057 Score=51.65 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHH
Q 044999 195 VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLY 267 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L 267 (461)
.-...++..+..++++++.+..|.+..+--.+..++. .+.+..|..++++++.|... .+.-..+...++||..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3456788888888999999999999877666666665 33567888999999999887 4456677788999999
Q ss_pred HHHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchh
Q 044999 268 AELLQGPDSTGKEISEDVFCILAVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVP 333 (461)
Q Consensus 268 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 333 (461)
+..+..++..-+..|..++..+-.++..-..+. ..+.++.+.+++.....++++..+|+.++..+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999998877776533222 555566677899999999999999999987776
Q ss_pred HHhh
Q 044999 334 VIRN 337 (461)
Q Consensus 334 ~l~~ 337 (461)
.+..
T Consensus 254 aL~~ 257 (293)
T KOG3036|consen 254 ALRS 257 (293)
T ss_pred HHHh
Confidence 6653
No 128
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.62 E-value=0.01 Score=61.20 Aligned_cols=278 Identities=14% Similarity=0.023 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhc---cChhhHHHHHHcCCHHHHHH
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVT---FGNENRVIVARNGGLEIVID 146 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~g~i~~L~~ 146 (461)
....|+..|..++..-++ ...-..++|.++-++.++..+||..|...+..+.. +-+..-..+...-.+|.|-.
T Consensus 439 tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 345588888888864222 22233468999999999999999999988884432 22233344444457888888
Q ss_pred HhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 044999 147 LLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPG 225 (461)
Q Consensus 147 ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 225 (461)
++.+ ....+|..-+..|..++.. .-.|.+.+.-.....++.+.+.+ ...+. ........+++ ++-+.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~nse-------t~~~~-~~~~~~~~L~~-~V~~~ 582 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNSE-------TAPEQ-NYNTELQALHH-TVEQM 582 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCcccc-------ccccc-ccchHHHHHHH-HHHHH
Confidence 8877 4445666666666666521 11122211111112223333322 00000 00111222222 23345
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---cHHHHH
Q 044999 226 LVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA---NANAIA 300 (461)
Q Consensus 226 L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~ 300 (461)
...++.++++-+++.-+..|.-||.. ..... .-+++.|+..|++.++.+|..-...+.-++..-. ..+.+.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN----D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyll 658 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN----DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLL 658 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc----cchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHH
Confidence 55677777778888877777777753 11111 1248889999999999998866666665543222 233444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
|.+.+-|.++.+-|...|+++|..|+...-.++..+. .+++....+|-.++..+|..++..|...+.
T Consensus 659 PLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 659 PLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999876443333222 356667778888999999999998888876
No 129
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0044 Score=61.93 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=122.4
Q ss_pred cccCCHHHHHHHHH-HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-HHHHHHh
Q 044999 230 FHIGDWTTKLVAGN-TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-EHLVRIL 307 (461)
Q Consensus 230 l~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~~ll 307 (461)
+.+.+...+..|.. ++..++.+++.... .+.+++...+.+.++++..-.-|.+.+...+....+. +.+.+=+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl 101 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDL 101 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhc
Confidence 55555555555543 55666665553332 4666666667889999888888888876665444444 8888888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHH
Q 044999 308 REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMI 386 (461)
Q Consensus 308 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~ 386 (461)
.++++.+|..|+++++.+-.. +. -...++.+.+++.++++.||+.|+-++..+-+ +++ .+.+.|.+..+.
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~~----el--~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~ 172 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRVK----EL--LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILK 172 (757)
T ss_pred cCCCHHHHHHHHHHHHhcChH----HH--HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHH
Confidence 999999999999988877321 11 12367788899999999999999999999886 544 566777788888
Q ss_pred HhccCCCHHHHHHHHHHHHHhcCC
Q 044999 387 ELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 387 ~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
.++.+.+|.+..+|..+|..+...
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh
Confidence 888999999999999999988655
No 130
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.59 E-value=0.011 Score=50.11 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHH
Q 044999 154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGL 226 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L 226 (461)
.-...|+..+-.++.+++.+..|.+..+--.+-.+|... .+-+|-.+++.++.+...++. -..+...+++|..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 445678888888889999999999998766677777543 457899999999999988876 6677889999999
Q ss_pred HHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc----CCH----H-HHHHHhCCCChhHHHHHHHHHHHhccCcccHH
Q 044999 227 VELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA----GAI----P-LYAELLQGPDSTGKEISEDVFCILAVSEANAN 297 (461)
Q Consensus 227 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~i----~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 297 (461)
++.+..+++..+..|...+..+-.++..-..+... ..+ . .+..+.+.+++.+.++++++..+|+.++..+.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999887775543333221 111 1 23344566788899999999999999987777
Q ss_pred HHH
Q 044999 298 AIA 300 (461)
Q Consensus 298 ~i~ 300 (461)
.+.
T Consensus 254 aL~ 256 (293)
T KOG3036|consen 254 ALR 256 (293)
T ss_pred HHH
Confidence 666
No 131
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.089 Score=54.66 Aligned_cols=218 Identities=13% Similarity=0.092 Sum_probs=136.2
Q ss_pred hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChH
Q 044999 148 LNSCNDGTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIP 224 (461)
Q Consensus 148 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~ 224 (461)
.++.+..+|..+.++|..++..+......... .+...|.+-+++.....+...+.+|..+-...+. ...++.. .++
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~ 741 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIP 741 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 34557899999999999999653332222111 2445556666666667788888888777655553 2222222 344
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHhc--C--ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHH--HHHHHHhcc-----
Q 044999 225 GLVELFHIGDWTTKLVAGNTLGVVAA--H--VEYITPVAEAGAIPLYAELLQGP--DSTGKEIS--EDVFCILAV----- 291 (461)
Q Consensus 225 ~L~~ll~~~~~~~~~~a~~~L~~l~~--~--~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a--~~~L~~l~~----- 291 (461)
-++-.++..+...++.+..+|..++. . +...+. ....+..++..+..+ ....+..+ +-++..+..
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444478889999999999998882 1 111111 011244444444322 22222222 233333321
Q ss_pred -CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 292 -SEANANAIAEHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 292 -~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+++....+.+.+.-+|.+++++++..|++.+..++. .|+..-.-.....++.+..++++.+..++.++-..|-.|.+
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 222334444778888899999999999999999984 46555555555688899999999888899888888888877
No 132
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.56 E-value=0.00022 Score=43.05 Aligned_cols=40 Identities=40% Similarity=0.626 Sum_probs=36.4
Q ss_pred hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 370 EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 370 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
++++..+.+.|+++.|++++++++++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999973
No 133
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.55 E-value=0.00038 Score=50.84 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhcCCC-cchHHHHHhhCC
Q 044999 355 VREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFSEDP-LQHERISEAIGI 423 (461)
Q Consensus 355 v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~~~~ 423 (461)
.+...+.+|+|++. ++.++..+.+.|++|.++... .+.+|.+++.|.+++.||+... ++++.+.+....
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~ 74 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQ 74 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcccc
Confidence 35667889999999 999999999999999999976 4579999999999999998664 566666554433
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.51 E-value=0.00013 Score=47.49 Aligned_cols=55 Identities=27% Similarity=0.235 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 044999 312 NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQL 366 (461)
Q Consensus 312 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 366 (461)
|.+|..|+++|++++........-....+++.|..++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5688899999999886644444445667899999999999999999999999875
No 135
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.44 E-value=0.011 Score=51.14 Aligned_cols=211 Identities=15% Similarity=0.183 Sum_probs=143.9
Q ss_pred CChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHH-------cCC--CH---HHHHHHHHHHHHhhcCchhHHH
Q 044999 151 CNDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAV-------SFG--SM---VSRERACQAIGLLAVTGRARRL 216 (461)
Q Consensus 151 ~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l-------~~~--~~---~~~~~a~~~L~~l~~~~~~~~~ 216 (461)
.+++.|+.|+.-|+.-- ..++....+... |.+..|++=+ ..+ +. .-...|+..+..++.+++.+..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 46778888888887776 445555555554 5555554422 111 12 3345777788889999999999
Q ss_pred HHhcCChHHHHHhcccC-----CHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 217 LVELGVIPGLVELFHIG-----DWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
|.+....-.|...+... .+..+-.++++++.+... ++.-..+....++|..+..+..++.-.+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999888888888732 246788899999999875 56667788889999999999988888888888888887
Q ss_pred ccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-----
Q 044999 290 AVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG----- 350 (461)
Q Consensus 290 ~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~----- 350 (461)
-.++.+-..+. ..+..+.+..++.+.+..+++-..|+.++..++.+.+. +| ..+++
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~--LP---~~Lrd~~f~~ 241 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC--LP---DQLRDGTFSN 241 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH--S----GGGTSSTTTT
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh--Cc---HHHhcHHHHH
Confidence 66655432222 44444557779999999999999999999888887742 22 22222
Q ss_pred ---CCHHHHHHHHHHHHHh
Q 044999 351 ---ENDEVREKVSGAIAQL 366 (461)
Q Consensus 351 ---~~~~v~~~a~~~L~~l 366 (461)
.++.++..-...+.|+
T Consensus 242 ~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 242 ILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp GGCS-HHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 3566666666655555
No 136
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.16 Score=50.43 Aligned_cols=254 Identities=16% Similarity=0.102 Sum_probs=127.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE 219 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 219 (461)
.+.+-..+++....+...|..++.++.. .... +. ..+..+--+++++...+|-.|.++|..++...+..-...+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 4445557778888899999999988872 2221 11 1566677788888999999999999999877654222111
Q ss_pred c------------CChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhh-------------hcCCHHHHHHHhC
Q 044999 220 L------------GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVA-------------EAGAIPLYAELLQ 272 (461)
Q Consensus 220 ~------------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~-------------~~g~i~~L~~ll~ 272 (461)
. -....+..+++.+.......-..-+.+...+ ++++-..+ ..+.+.-|..+|+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 0 0122333344433333222222222222222 11111110 0112333333333
Q ss_pred CC-ChhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999 273 GP-DSTGKEISEDVFCILAV-SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 273 ~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
.+ .-+.+.....++..+.. +++.+......|...+.+. +....+..+|.-|-.. +-........+..+...+.-
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNRviL 477 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNRVIL 477 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhcc--CCCCCCcchhhHHHhhhhhh
Confidence 22 22333333333333322 3333332223333332211 0111222233222211 00000111223334444444
Q ss_pred CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 351 ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 351 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.+..++..|..+|.++.. ++..+ ..+...|.+.+.+.+.++|..|...|.++.
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 566788899999998885 33322 223556777888999999999999999987
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.40 E-value=0.0037 Score=49.69 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=98.9
Q ss_pred HHHHHcCCHHHHHHHhcCCC------hHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHH
Q 044999 133 VIVARNGGLEIVIDLLNSCN------DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAI 204 (461)
Q Consensus 133 ~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L 204 (461)
..|...||+..|+++.+++. .+....++.++..+-.+....+...+..++..++.+.... +..+...|+..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 56788899999999998765 3677888999998887766677778888899999998766 578999999999
Q ss_pred HHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 205 GLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 205 ~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
.++..+++. ...+.+.=-++.|+..++..+++++..+...+-.|-..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999998888 66666677789999999999999999988666665544
No 138
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.0004 Score=41.84 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=35.6
Q ss_pred CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+++..+.+.|+++.|++++.+++++++..++++|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467788899999999999999899999999999999973
No 139
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.06 Score=46.32 Aligned_cols=203 Identities=20% Similarity=0.227 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
+..+.+...+++...+...+.+|+.. .....++.++..+. +..+-+|..|..+|+.+. .
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~----------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-------- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM----------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-------- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh----------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c--------
Confidence 33333433344334444445555444 23446677777666 334556667777777664 2
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc----------------HHHHH--HHHHHHh-ccCCH-HHHHHHH
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN----------------ANAIA--EHLVRIL-REGDN-EANAAAA 319 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~i~--~~l~~ll-~~~~~-~~~~~a~ 319 (461)
....+.+-+..+++...+++.+..++..+-..... ..... ..+-..+ ....+ --+..|.
T Consensus 99 -~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~am 177 (289)
T KOG0567|consen 99 -PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAM 177 (289)
T ss_pred -hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhh
Confidence 12234444555555566666655555554211100 00000 2222222 22222 2234555
Q ss_pred HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc--CCCHHHH
Q 044999 320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH--DESEELR 397 (461)
Q Consensus 320 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~ 397 (461)
..|+|+-.. ..+..|++-+...+.-.|..++.+++.|-... .+|.|.+.|. ..+|.+|
T Consensus 178 F~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 178 FYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred hHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHH
Confidence 555555221 23555666677778888899999888886533 3788888774 4789999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHhhCCch
Q 044999 398 DNAAESLINFSEDPLQHERISEAIGIPS 425 (461)
Q Consensus 398 ~~a~~~L~~l~~~~~~~~~l~~~~~~~~ 425 (461)
..|+.+|..++. +++.+.|.+..+.+.
T Consensus 238 hEaAeALGaIa~-e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 238 HEAAEALGAIAD-EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHHhhcC-HHHHHHHHHHcCCcH
Confidence 999999998884 446666666554443
No 140
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.37 E-value=0.0015 Score=47.78 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC--CCCHHHHHHHHHHHHHHhccChhhHHHHHHc
Q 044999 72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP--QSDDSFRTVLVKCLRVFVTFGNENRVIVARN 138 (461)
Q Consensus 72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 138 (461)
+..+..+.+++.. +...++.+++.|+++.+++... ..+|.++.++..++.+++..+++++..+.+.
T Consensus 4 ~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 4 RDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3467899999987 8999999999999999998765 5689999999999999999999999988754
No 141
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.36 E-value=0.019 Score=52.57 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h-----HHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999 133 VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R-----EVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAI 204 (461)
Q Consensus 133 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~-----~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L 204 (461)
..+...+.+..|+..|..-+.+.|..+..+..++... . .....+... .++..|+..-+ ++++-..+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 3444557788899999998999999999998888722 1 234445443 24444444333 556667778888
Q ss_pred HHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH-hcCccchhhhhhc---CCHHHHHHHhCCCChhHHH
Q 044999 205 GLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV-AAHVEYITPVAEA---GAIPLYAELLQGPDSTGKE 280 (461)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~ 280 (461)
+.+..+....+.+.....+..+.+.++.++-++...|..++..+ +.++.....+... .++.....++.+++.-.+.
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 88888887778888888999999999999999999999999874 4544444444433 4567788899999999999
Q ss_pred HHHHHHHHhccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999 281 ISEDVFCILAVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIR 336 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 336 (461)
.++..|+.+-.+..+...+. ..++.+|++.+..++..|..++.-+..+|..-..+.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 99999999988888866554 778888999999999999999999998865544333
No 142
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.33 E-value=0.00042 Score=45.01 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHH
Q 044999 194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVV 248 (461)
Q Consensus 194 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 248 (461)
+.+|..|+.+|++++...+....-....+++.|+.+++++++.++..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987777633335556899999999999999999999999875
No 143
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.33 E-value=0.044 Score=48.39 Aligned_cols=213 Identities=9% Similarity=0.037 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCchhHHHH-HhcCCHHHHHhcCCC--CCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhc
Q 044999 74 AAYCLKQIASQADGALATEI-GQSGVINSVLRLFPQ--SDDSFRTVLVKCLRVFVTFGNENRVIVAR-NGGLEIVIDLLN 149 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~-~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~g~i~~L~~ll~ 149 (461)
|+.+|.++.. ..+.+..+ .+.-.-..++..++. ++.+.|-....+++.++. ++++.+.+-+ .+.+..++++.+
T Consensus 169 av~cl~~l~~--~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iVk 245 (432)
T COG5231 169 AVSCLSNLEF--DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIVK 245 (432)
T ss_pred HHHHHhhhhh--hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998 55544444 444455667777764 456677788888888874 4455544432 234556666665
Q ss_pred CC-ChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhh---------------
Q 044999 150 SC-NDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGLLA--------------- 208 (461)
Q Consensus 150 ~~-~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~--------------- 208 (461)
.. ...+-+.++.++.+++. .........-.|-+..-++.|... +++++...-.+=..+-
T Consensus 246 ~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~E 325 (432)
T COG5231 246 ERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNE 325 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 43 34677888888888884 223333334444344445555432 4444332211111111
Q ss_pred -------cCc---------hhHHHHHh--cCChHHHHHhcccCCHH-HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHH
Q 044999 209 -------VTG---------RARRLLVE--LGVIPGLVELFHIGDWT-TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYA 268 (461)
Q Consensus 209 -------~~~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~ 268 (461)
.++ .+...+.+ ...+..|.++++...+. ....||.-+..+... |+.+..+.+.|+=..+.
T Consensus 326 Ldsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im 405 (432)
T COG5231 326 LDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIM 405 (432)
T ss_pred HhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHH
Confidence 111 11111111 23567778888866554 455677778777776 88899999999999999
Q ss_pred HHhCCCChhHHHHHHHHHHHh
Q 044999 269 ELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 269 ~ll~~~~~~~~~~a~~~L~~l 289 (461)
+++.+++++++..|+.++.-+
T Consensus 406 ~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 406 NLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHhcCCCchhhHHHHHHHHHH
Confidence 999999999999888877654
No 144
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.28 E-value=0.0096 Score=47.42 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=96.3
Q ss_pred HHHHHHhcCCHHHHHHHHcCCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--CHHHHHHHHH
Q 044999 172 VRRVLICLGGLRYLVEAVSFGS------MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--DWTTKLVAGN 243 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~ 243 (461)
+..+|+..+|+..|++++.++. .+....++.++..|..++-......+..++..++...... +..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567899999999999998875 3677889999999988876555567777888998888844 5789999999
Q ss_pred HHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 244 TLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 244 ~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
.|.++..+.+. ...+.+.=-++.|+..++..+++++.++...+-.|
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999988444 55555556689999999999999999998887766
No 145
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.20 E-value=0.04 Score=45.90 Aligned_cols=161 Identities=10% Similarity=0.045 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc
Q 044999 152 NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF 230 (461)
Q Consensus 152 ~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll 230 (461)
++.+|..++.+++.++ ..+...+ ..++.+...|.++++.+|..|+.+|..|...+-.+.. ...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 4678999999999998 4443332 2478899999999999999999999999776544211 12347778888
Q ss_pred ccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC---------ChhHHHHHHHHHHHhccCcccHHHHHH
Q 044999 231 HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP---------DSTGKEISEDVFCILAVSEANANAIAE 301 (461)
Q Consensus 231 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~---------~~~~~~~a~~~L~~l~~~~~~~~~i~~ 301 (461)
.+++++++..|..++..+.... . ...+... ++.++.-+... +.+-+......|......+..+..+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~-~-~~~i~~~-~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~ 149 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKR-N-PNIIYNN-FPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE 149 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-c-chHHHHH-HHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988752 1 1112222 34444434332 223333344444443333455555554
Q ss_pred HHHHHh-ccC---CHHHHHHHHHHHH
Q 044999 302 HLVRIL-REG---DNEANAAAADVLW 323 (461)
Q Consensus 302 ~l~~ll-~~~---~~~~~~~a~~~L~ 323 (461)
.+.+-+ ... ++.+...+..+|.
T Consensus 150 kl~~~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 150 KLCQRFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHH
Confidence 444332 222 4555555555544
No 146
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.067 Score=50.20 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=139.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHhhCCh---HHHHH
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSALALLR---EVRRV 175 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~ 175 (461)
..+..-.++++..++..++.++.+.+...+.-....... .+..++. +....+.++...++.+|..+.... +....
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~ 339 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY 339 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence 333444556777788899999999887644433333322 2444444 556667789999998888877322 22222
Q ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
++ ++.-.+..+..+.++++|..+...++.|+..... +..+.+ .+...+++-.+.++++.+-. ||+.....+..
T Consensus 340 ~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p 416 (533)
T KOG2032|consen 340 LL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYP 416 (533)
T ss_pred ch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCc
Confidence 22 2345667788888999999999999998876654 334443 33445566666777776543 45555444432
Q ss_pred ccchhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-
Q 044999 252 VEYITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY- 328 (461)
Q Consensus 252 ~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~- 328 (461)
.-.++.. .+.++.. + +.+ +..+..-...-..+. .+++.-.........++++.-+.++..+...-.++..+
T Consensus 417 ~l~rke~--~~~~q~~---l-d~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 417 NLVRKEL--YHLFQES---L-DTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred hhHHHHH--HHHHhhh---h-HHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence 2222211 1111111 1 110 011110000001111 11111111113333444455556666666555555432
Q ss_pred -CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 329 -KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 329 -~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+..+...-..-....|-.+.+++.++++..+..++..+..
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 2233332222345567777788999999999999887753
No 147
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.019 Score=57.38 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHhccc--------CCHHHHHHHHHHHHHHhcCccchhhhhhc--------CCHHHHHHHhCC----CC
Q 044999 216 LLVELGVIPGLVELFHI--------GDWTTKLVAGNTLGVVAAHVEYITPVAEA--------GAIPLYAELLQG----PD 275 (461)
Q Consensus 216 ~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------g~i~~L~~ll~~----~~ 275 (461)
.+...+++..++++... +..+....|+.+|.-+..-++.+..++.. .++..++..-.. .+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 34555666667766652 22355667777777766667777776643 123333333221 27
Q ss_pred hhHHHHHHHHHHHhccCc-ccHHHHHHHHHH-------Hhc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHH
Q 044999 276 STGKEISEDVFCILAVSE-ANANAIAEHLVR-------ILR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVN 346 (461)
Q Consensus 276 ~~~~~~a~~~L~~l~~~~-~~~~~i~~~l~~-------ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ 346 (461)
++++..|+.++.|+...+ +++......+.. .+. ....+..+..+.-.|+- +...++|..|+.
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~---------Vr~ndGIkiLl~ 746 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEA---------VRGNDGIKILLK 746 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHH---------HhcCccHHHHHH
Confidence 899999999999997666 555444311111 111 11122333444444443 345688999999
Q ss_pred hhcCCC-----HHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999 347 LLRGEN-----DEVREKVSGAIAQLSYNEADRVALADA 379 (461)
Q Consensus 347 ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 379 (461)
+++-.. +.++..|+.+|..|++++..++.+.+.
T Consensus 747 Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 747 LLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred HHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 998543 458999999999999999988887664
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.098 Score=51.55 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=102.9
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHhh-CChHHH
Q 044999 97 GVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLLEILSALA-LLREVR 173 (461)
Q Consensus 97 ~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~-~~~~~~ 173 (461)
++-+.+-+++.+.||-.|......+. ..+... .++++..|+.. .++.+.++|+.|..+|.-++ .+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg--------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG--------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC--------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-
Confidence 33444556677777776666665554 222111 23345556664 56778899999999998887 44444
Q ss_pred HHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999 174 RVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH- 251 (461)
Q Consensus 174 ~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~- 251 (461)
++..+++|. +.|+.+|..++.+|+-.|.....+.. +..|-.+..+...-+|..|+-++..+...
T Consensus 590 --------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 590 --------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred --------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 455666665 45999999999999998887766543 45566666677777888888888776654
Q ss_pred -ccchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999 252 -VEYITPVAEAGAIPLYAELLQGPDSTGK 279 (461)
Q Consensus 252 -~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (461)
+.....+ .++...+.+.+.+.+.+..
T Consensus 656 t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 656 TEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred ccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 3333222 3556677777776655543
No 149
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.0082 Score=59.34 Aligned_cols=216 Identities=15% Similarity=0.083 Sum_probs=145.3
Q ss_pred CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhcccCCH-HHHHHHHHHH
Q 044999 168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIG-LLAVTGRARRLLVELGVIPGLVELFHIGDW-TTKLVAGNTL 245 (461)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L 245 (461)
.....+...+..|+...|+.+...+.+..+.....+|. .+....... ...++.+...+.+... --...++.++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34555666778899999999998888877777777776 332222211 2245555555553322 2234678899
Q ss_pred HHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHH-HHhccCCHHHHHH
Q 044999 246 GVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLV-RILREGDNEANAA 317 (461)
Q Consensus 246 ~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~-~ll~~~~~~~~~~ 317 (461)
.||+.. ...|..+.+...++.+-.++...++..+..++..+.||..++..-.... ..++ ..+.........+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 999887 6777778888778888888888899999999999999988877654443 3333 3344445556666
Q ss_pred HHHHHHHhhCC-CCchh-HHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHh
Q 044999 318 AADVLWDLAGY-KHSVP-VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIEL 388 (461)
Q Consensus 318 a~~~L~~l~~~-~~~~~-~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~l 388 (461)
++.++..+... ..++. ...-..+...++.++.+++++++...+....|+.. ..+....+.....++.+..+
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL 720 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 66776655543 33333 33344678889999999999999999988888665 44445555555544444443
No 150
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.29 Score=46.14 Aligned_cols=263 Identities=14% Similarity=0.024 Sum_probs=137.1
Q ss_pred HcCCHHHHHHHh----cCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC
Q 044999 137 RNGGLEIVIDLL----NSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVT 210 (461)
Q Consensus 137 ~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~ 210 (461)
+.|.+..++..+ .+++..++..|++.|.+.+.. ++..... ..-.+..++.-|.++ +.+|+..++.+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 344444444433 345668999999999999955 4333322 223456666666555 779999999988887665
Q ss_pred chh---HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhc--CCHHHHHHHhCCCChhHHHHHH
Q 044999 211 GRA---RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEA--GAIPLYAELLQGPDSTGKEISE 283 (461)
Q Consensus 211 ~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~ 283 (461)
..+ ...+. .+.-.+..+..+.+++.+..+...++.|+.. ...+..+.+. +....++--+.+.++.+-. |+
T Consensus 331 ~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-AC 407 (533)
T KOG2032|consen 331 ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-AC 407 (533)
T ss_pred hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HH
Confidence 544 22232 2455677788899999999999888888876 3444444431 2233444446666776554 44
Q ss_pred HHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999 284 DVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362 (461)
Q Consensus 284 ~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~ 362 (461)
+.........-.+++....+-+.+...-+..+.---..-..+. .+++....... ....+++..-+.++..+..-
T Consensus 408 r~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~ 482 (533)
T KOG2032|consen 408 RSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLK 482 (533)
T ss_pred HHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHH
Confidence 4444443333334433322221221111111110000000111 11111111111 11222333334455555443
Q ss_pred HHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 363 IAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 363 L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
-.+... .+..+...........|-.+.+++-|+++..+..++..+.
T Consensus 483 t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 483 TTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 333332 2232333322233455566778899999999999987765
No 151
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.04 E-value=0.083 Score=44.03 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh
Q 044999 193 SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL 271 (461)
Q Consensus 193 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll 271 (461)
++.+|..++.+++-|+...++ -+ ..++.+...|.++++.+|..|+.+|..|...+-.+. +...+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence 467899999999998877665 22 257899999999999999999999999986522221 112247788888
Q ss_pred CCCChhHHHHHHHHHHHhccC
Q 044999 272 QGPDSTGKEISEDVFCILAVS 292 (461)
Q Consensus 272 ~~~~~~~~~~a~~~L~~l~~~ 292 (461)
.+++++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998665
No 152
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.01 E-value=0.021 Score=49.30 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=113.1
Q ss_pred HHhccChhhHHHHHHcCCHHHHHHHhcCCC-----hHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHH
Q 044999 123 VFVTFGNENRVIVARNGGLEIVIDLLNSCN-----DGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMV 195 (461)
Q Consensus 123 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~ 195 (461)
.++ .+++.|..|.+.++.-.|..+|+..+ +.+|..++.+++.+.. +.+....+...+++|..++.++.+++-
T Consensus 76 ~vA-shpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel 154 (262)
T PF04078_consen 76 CVA-SHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL 154 (262)
T ss_dssp HHH-H-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH
T ss_pred HHH-cChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH
Confidence 555 57799999999998888888886543 3789999999999994 566677888899999999999999988
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHh--------cCChHHHHH-hcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHH
Q 044999 196 SRERACQAIGLLAVTGRARRLLVE--------LGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPL 266 (461)
Q Consensus 196 ~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~ 266 (461)
.+..|..++..+-.++..-..+.+ ..++..++. +..++++...++..++-..|+.++..+..+...
T Consensus 155 SKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~----- 229 (262)
T PF04078_consen 155 SKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQC----- 229 (262)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHh-----
Confidence 899999999888777655333322 223444444 334778899999999999999998888777532
Q ss_pred HHHHhCC--------CChhHHHHHHHHHHHh
Q 044999 267 YAELLQG--------PDSTGKEISEDVFCIL 289 (461)
Q Consensus 267 L~~ll~~--------~~~~~~~~a~~~L~~l 289 (461)
+-..+++ +|+.++.+-...+.|+
T Consensus 230 LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 230 LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1222222 3666777666666554
No 153
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.96 E-value=0.39 Score=46.18 Aligned_cols=342 Identities=14% Similarity=0.147 Sum_probs=187.6
Q ss_pred HHHHHHhhccCCCCCCCcH-HHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999 50 IPILARLLGENNFSGNLTR-SIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 50 i~~l~~~l~~~~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~ 127 (461)
+|.++..|.. ++++. ...+....+|..+|. ....-+.+.. ..+..+-...+. .+.+.......++..+...
T Consensus 1 ~p~ll~~Lpd----~~~~~~~~~~~~L~~l~~ls~--~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~ 73 (415)
T PF12460_consen 1 LPALLALLPD----SDSSTDSNYERILEALAALST--SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEK 73 (415)
T ss_pred CchHHhhCCC----CCCcchhHHHHHHHHHHHHHC--ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 3567777764 33222 344558899999998 5544333322 344444444442 2455566666677655543
Q ss_pred ChhhH-----HHHHHcCCHHHHHHHhcCC-------ChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHc---
Q 044999 128 GNENR-----VIVARNGGLEIVIDLLNSC-------NDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVS--- 190 (461)
Q Consensus 128 ~~~~~-----~~~~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~--- 190 (461)
..... ....+...++.++++.-.. ++.+...+..++..+. .+.+.++.+.+ .+..++-
T Consensus 74 ~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~~ 148 (415)
T PF12460_consen 74 KQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSPK 148 (415)
T ss_pred cccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHcccc
Confidence 32222 3333444777777755221 2344455555555555 34444545433 2222222
Q ss_pred -------CCC------HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccch
Q 044999 191 -------FGS------MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEYI 255 (461)
Q Consensus 191 -------~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~~ 255 (461)
..+ .....-...++..+-...... -....+..++.+.. ..++..+..++.+++.+... ++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~ 225 (415)
T PF12460_consen 149 SFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD 225 (415)
T ss_pred ccCCCCccccccccccccHHHHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh
Confidence 111 111222223333332222111 11125667777655 44577788888888887764 1111
Q ss_pred hhhhhcCCHHHHHHHh-CCCChhHHHHHHH----HHHHh-ccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-
Q 044999 256 TPVAEAGAIPLYAELL-QGPDSTGKEISED----VFCIL-AVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY- 328 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~----~L~~l-~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~- 328 (461)
.+ ..++..+..-+ ...++..+..+.. +..-+ ..+.+....+.+.+++++.+ +++...++..+.-+...
T Consensus 226 -~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 226 -DL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS 300 (415)
T ss_pred -hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence 11 12233333333 2223333333333 33333 34444455555888888877 77778888888888765
Q ss_pred CC--------chhHHhhcC----CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHhccCCCHH
Q 044999 329 KH--------SVPVIRNSG----AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD-AGAVPIMIELLHDESEE 395 (461)
Q Consensus 329 ~~--------~~~~l~~~g----~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~ 395 (461)
++ +.+.+.+.. .+|.|++-.+..+...+...+.+|.++..+-...-..-+ ...+|.|++-+..++++
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~ 380 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDAD 380 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 22 222222222 467777777777777888899999999883221111111 23688899999889999
Q ss_pred HHHHHHHHHHHhcCCC
Q 044999 396 LRDNAAESLINFSEDP 411 (461)
Q Consensus 396 ~~~~a~~~L~~l~~~~ 411 (461)
++..+..+|..+..+.
T Consensus 381 v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 381 VLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998776
No 154
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.91 E-value=0.0065 Score=44.50 Aligned_cols=91 Identities=20% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC
Q 044999 156 RRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD 234 (461)
Q Consensus 156 ~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~ 234 (461)
|..++..|...+. -... ..-.-..+++.++..+.++++.+|..|+.+|.+++......-...-..++..|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5566777777762 2222 1112234789999999999999999999999999876654222222457888888888999
Q ss_pred HHHHHHHHHHHHHH
Q 044999 235 WTTKLVAGNTLGVV 248 (461)
Q Consensus 235 ~~~~~~a~~~L~~l 248 (461)
+.++..|. .|-++
T Consensus 82 ~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAAE-LLDRL 94 (97)
T ss_pred hhHHHHHH-HHHHH
Confidence 98887663 44443
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.90 E-value=0.49 Score=46.28 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=148.4
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
..++.+..++...+ ++..++..|+..+......-+ .+.+ +|..++++... +|..+++.|...|-.+|.+
T Consensus 20 ~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcED------ed~~iR~~aik~lp~~ck~- 89 (556)
T PF05918_consen 20 QHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCED------EDVQIRKQAIKGLPQLCKD- 89 (556)
T ss_dssp GGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-------SSHHHHHHHHHHGGGG--T-
T ss_pred cCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhc------ccHHHHHHHHHhHHHHHHh-
Confidence 45667777777655 578899999999888872211 1334 89999999974 6788999999999999996
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---CCChHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN---SCNDGTRRYLLEI 162 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~ 162 (461)
+++....+ ...|+++|.++++.....+-.++..+...++.. .+..++..+. +.++.+|+.++..
T Consensus 90 ~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkF 156 (556)
T PF05918_consen 90 NPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKF 156 (556)
T ss_dssp --T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHH
T ss_pred HHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHH
Confidence 44443333 578999999998877777777777666555332 2334444443 5677899999988
Q ss_pred HHHhh--CChHH-H-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----ch-hHHHHHhcCChHHHHHhc---
Q 044999 163 LSALA--LLREV-R-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT----GR-ARRLLVELGVIPGLVELF--- 230 (461)
Q Consensus 163 L~~l~--~~~~~-~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~-~~~~~~~~~~i~~L~~ll--- 230 (461)
|..-. ...+. . ..=.+.-++..+-+.|.+-..+--...+.+|..+-.. .. .+..++ +.+.+..
T Consensus 157 l~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld 231 (556)
T PF05918_consen 157 LREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLD 231 (556)
T ss_dssp HHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTT
T ss_pred HHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccC
Confidence 85432 11111 1 0111122344455666654555555666667666552 11 133332 2233222
Q ss_pred ---ccCCHHHHHHHHHHHHH-H---hcCccchhhhh---hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc--HHH
Q 044999 231 ---HIGDWTTKLVAGNTLGV-V---AAHVEYITPVA---EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN--ANA 298 (461)
Q Consensus 231 ---~~~~~~~~~~a~~~L~~-l---~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~ 298 (461)
...+++.......++.. + +..... ..++ ...++|.+-.+ +++.+...+.+++.++.+... ...
T Consensus 232 ~~f~~sD~e~Idrli~C~~~Alp~fs~~v~S-skfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~ 306 (556)
T PF05918_consen 232 QPFDPSDPESIDRLISCLRQALPFFSRGVSS-SKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQ 306 (556)
T ss_dssp S---SSSHHHHHHHHHHHHHHGGG-BTTB---HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----THHH
T ss_pred CCCCCcCHHHHHHHHHHHHHhhHHhcCCCCh-HHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHH
Confidence 23345555444444433 2 121111 1111 11233333222 456677777788777543322 334
Q ss_pred HHHHHHHHhcc------CCH----HHHHHHHHHHHHhhCC
Q 044999 299 IAEHLVRILRE------GDN----EANAAAADVLWDLAGY 328 (461)
Q Consensus 299 i~~~l~~ll~~------~~~----~~~~~a~~~L~~l~~~ 328 (461)
+.+.+.++|.. ..+ ...+..+.++..|+..
T Consensus 307 ~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 307 LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 44555555532 123 3445666666677743
No 156
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.83 E-value=0.13 Score=47.04 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=110.0
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc--CCHHHHHHHhCCCChhHHHHHHHHHHHhccC---cccHH
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA--GAIPLYAELLQGPDSTGKEISEDVFCILAVS---EANAN 297 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~ 297 (461)
+...+..+.......|+.++..+.++.........+.+. .+++.+...++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 344555556667889999988888877653333333221 4577788888877766667777777766433 23333
Q ss_pred HHH----HHHHHHhccC--CHHHHHHHHHHHHHhhCC-CCchhHHh-hcCCHHHHHH--hhc-C---------CCHHHHH
Q 044999 298 AIA----EHLVRILREG--DNEANAAAADVLWDLAGY-KHSVPVIR-NSGAIPILVN--LLR-G---------ENDEVRE 357 (461)
Q Consensus 298 ~i~----~~l~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~l~-~~g~i~~L~~--ll~-~---------~~~~v~~ 357 (461)
.+. |.|.+.+.++ .+..|..++.+|+-++.. ......+. -...++.+.. ..+ + +++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 444 8888888765 356777777777776642 11111111 0112232211 111 1 1245777
Q ss_pred HHHHHHHHhcC-Chh-hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 358 KVSGAIAQLSY-NEA-DRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 358 ~a~~~L~~l~~-~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.|+.+-+-|.. -+. ......+ ..+|.|..+|.+.+.++|..|..+|.-|.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 77655555554 222 1223322 35899999999999999999999888764
No 157
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.77 E-value=0.15 Score=47.80 Aligned_cols=231 Identities=17% Similarity=0.141 Sum_probs=132.3
Q ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC-CHHHHH-HHHHHHHHhhcCchhHHHH
Q 044999 141 LEIVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG-SMVSRE-RACQAIGLLAVTGRARRLL 217 (461)
Q Consensus 141 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~-~a~~~L~~l~~~~~~~~~~ 217 (461)
+..+++-++.. ...+|..++--|+.-+.+++++..+...|..+.+++.+... +..... .++.++.-++........+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 45566655533 34889999999999999999999999999999999999544 332333 3333444444444333333
Q ss_pred HhcCChHHHHHhcc--c------------------------------------------CCHHHHHHHHHHHHHHh----
Q 044999 218 VELGVIPGLVELFH--I------------------------------------------GDWTTKLVAGNTLGVVA---- 249 (461)
Q Consensus 218 ~~~~~i~~L~~ll~--~------------------------------------------~~~~~~~~a~~~L~~l~---- 249 (461)
.+.+....++.++. . .....+..|..++..++
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~ 182 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR 182 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence 33334444344443 0 00112224444444442
Q ss_pred ----------cC-ccchhhhhhcCCHHHHHHHhCC----C-------C-----hhHHHHHHHHHHHhcc-CcccHHHHH-
Q 044999 250 ----------AH-VEYITPVAEAGAIPLYAELLQG----P-------D-----STGKEISEDVFCILAV-SEANANAIA- 300 (461)
Q Consensus 250 ----------~~-~~~~~~~~~~g~i~~L~~ll~~----~-------~-----~~~~~~a~~~L~~l~~-~~~~~~~i~- 300 (461)
.. +..++.+.+.|++..++..+.+ . + ......+..+|.+.+. +.+++..+.
T Consensus 183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~ 262 (361)
T PF07814_consen 183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLS 262 (361)
T ss_pred hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 01 3346666777889988888752 1 1 1134456777777753 444555444
Q ss_pred ----------HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhc--------------CCCHHH
Q 044999 301 ----------EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLR--------------GENDEV 355 (461)
Q Consensus 301 ----------~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~--------------~~~~~v 355 (461)
..+........++....+++.+.|++- ++.....+...+....+..+.. ....+.
T Consensus 263 ~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~ 342 (361)
T PF07814_consen 263 HRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDI 342 (361)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchH
Confidence 222222222334556788999999994 5666666665544333222211 112346
Q ss_pred HHHHHHHHHHhcC-Chh
Q 044999 356 REKVSGAIAQLSY-NEA 371 (461)
Q Consensus 356 ~~~a~~~L~~l~~-~~~ 371 (461)
..-++.+|-||+. ++.
T Consensus 343 ~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 343 LILALGLLINLVEHSEA 359 (361)
T ss_pred HHHHHHhHHHheeeCcc
Confidence 6677888888887 443
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.72 E-value=0.15 Score=46.64 Aligned_cols=185 Identities=20% Similarity=0.225 Sum_probs=114.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC---ccchh
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH---VEYIT 256 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~ 256 (461)
+...+..+.+.+...|..++..+.++.........+.+ .-.+..+...++.+..+-+..|+.++.-++.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44556666677788999999999888755544333322 23577788888877766677787878777765 13333
Q ss_pred hhhhcCCHHHHHHHhCCCC--hhHHHHHHHHHHHhcc---Cc-ccHHHH---HHHHH--HHhccC----------CHHHH
Q 044999 257 PVAEAGAIPLYAELLQGPD--STGKEISEDVFCILAV---SE-ANANAI---AEHLV--RILREG----------DNEAN 315 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~---~~-~~~~~i---~~~l~--~ll~~~----------~~~~~ 315 (461)
.+.+ ...|.|...+.+.. +.+|..++.+|+-++. .+ +..... .+.+. ...+++ ++.+.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 4433 34788888887663 4566666666665532 22 222211 13222 222221 24677
Q ss_pred HHHHHHHHHhhCC-CCc-hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 316 AAAADVLWDLAGY-KHS-VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 316 ~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
..|+.+-+-|... +.. .... -...++.|..+|.+.+..||..|-.+|+-|..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777766666643 331 2222 23468999999999999999999988887754
No 159
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.71 E-value=0.38 Score=49.43 Aligned_cols=240 Identities=14% Similarity=0.135 Sum_probs=149.3
Q ss_pred HHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc----cCC----HHHHHHHH
Q 044999 176 LICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----IGD----WTTKLVAG 242 (461)
Q Consensus 176 ~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~ 242 (461)
+.+.||+..++..+.+- ..+.....+..|..++....+++.+.+.|+++.|++.+. .+. ..+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45678999999998753 346677788888888999888999999999999998875 333 56666666
Q ss_pred HHHHHHhcCcc---chh--hhhhc--------CCHHHHHHHhCCC----ChhHHHHHHHHHHHhccCcccHHHHH-HHHH
Q 044999 243 NTLGVVAAHVE---YIT--PVAEA--------GAIPLYAELLQGP----DSTGKEISEDVFCILAVSEANANAIA-EHLV 304 (461)
Q Consensus 243 ~~L~~l~~~~~---~~~--~~~~~--------g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~i~-~~l~ 304 (461)
.++..+..... ... ..... .-+..+++.+.+. ++.+....+++|-+|+...+...... +.+-
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~ 272 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK 272 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence 66655544311 110 00111 1256666666654 57888889999999988776654443 4444
Q ss_pred HHhccC------CHHHHHHHHHHHHHhhCC-------CCchhHHhhcCCHHHHHHhhcCCCH--------HHH-------
Q 044999 305 RILREG------DNEANAAAADVLWDLAGY-------KHSVPVIRNSGAIPILVNLLRGEND--------EVR------- 356 (461)
Q Consensus 305 ~ll~~~------~~~~~~~a~~~L~~l~~~-------~~~~~~l~~~g~i~~L~~ll~~~~~--------~v~------- 356 (461)
..++-. .++- ...+.+++.++.. ...++.+++.|++...++++...-| +-+
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 444211 1111 2335666666632 2347888899999999998864332 222
Q ss_pred -HHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999 357 -EKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPLQHERI 417 (461)
Q Consensus 357 -~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~l 417 (461)
..++..|..|+. ++..+ .....++++.+..+=+. ....+=..|-.+|-.|..+++..+.+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I 414 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKI 414 (802)
T ss_pred HHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHH
Confidence 346778888888 44444 33556667666555432 23444445555566666655533333
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.71 E-value=0.25 Score=48.28 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=123.9
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
--++++..++.|++++|..+|.+|++.|..+|.+ +.+.+.++...|+++|++ +|+......-.+|..+....+
T Consensus 56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~t------dd~~E~~~v~~sL~~ll~~d~ 128 (556)
T PF05918_consen 56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQT------DDPVELDAVKNSLMSLLKQDP 128 (556)
T ss_dssp GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHhcCc
Confidence 3688999999999999999999999999999911 233445588889999986 555555556667777766311
Q ss_pred chhHHHHHhcCCHHHHHhcC---CCCCHHHHHHHHHHHH-HHhccCh-hhH-HHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999 87 GALATEIGQSGVINSVLRLF---PQSDDSFRTVLVKCLR-VFVTFGN-ENR-VIVARNGGLEIVIDLLNSCNDGTRRYLL 160 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~-~l~~~~~-~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~ 160 (461)
.. .+..+...+ .+++..++..+...+. .+-.-.. ... ..-.+.-++..+-++|.+-...--...+
T Consensus 129 k~---------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m 199 (556)
T PF05918_consen 129 KG---------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFM 199 (556)
T ss_dssp HH---------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHH
T ss_pred HH---------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 21 223333333 2567777888887776 3322111 111 0111122344455566543332223333
Q ss_pred HHHHHhhC-----ChHHHHHHHhcCCHHHHHHHH------cCCCHHHHHHHHHHHHH----hhcCchhHHH--HHhcCCh
Q 044999 161 EILSALAL-----LREVRRVLICLGGLRYLVEAV------SFGSMVSRERACQAIGL----LAVTGRARRL--LVELGVI 223 (461)
Q Consensus 161 ~~L~~l~~-----~~~~~~~~~~~~~l~~l~~~l------~~~~~~~~~~a~~~L~~----l~~~~~~~~~--~~~~~~i 223 (461)
.+|..+.. ....++.+++ .+.+.. ...+++.....+.++.. ++......+. ++...++
T Consensus 200 ~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvl 274 (556)
T PF05918_consen 200 SLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVL 274 (556)
T ss_dssp HHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTC
T ss_pred HHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhc
Confidence 44444443 2333333332 222222 22344544444444433 2222222111 1123355
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhcCc--cchhhhhhcCCHHHHHHHhCC------CCh----hHHHHHHHHHHHhcc
Q 044999 224 PGLVELFHIGDWTTKLVAGNTLGVVAAHV--EYITPVAEAGAIPLYAELLQG------PDS----TGKEISEDVFCILAV 291 (461)
Q Consensus 224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~ll~~------~~~----~~~~~a~~~L~~l~~ 291 (461)
|.+-.+ +++.+...+.++..++.+. .....+ ++.+..+|.. ..+ ...++.+.++.+|+.
T Consensus 275 P~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~-----L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~ 345 (556)
T PF05918_consen 275 PKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQL-----LPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLAR 345 (556)
T ss_dssp CCTT---------HHHHHHHHHHHHHTT----THHHH-----HHHHHHHHHTTS----------HHHHHHHHHHHHHHHT
T ss_pred CChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHH-----HHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhh
Confidence 544444 4566777777888887762 112222 4555555531 122 345666677777765
Q ss_pred Ccc
Q 044999 292 SEA 294 (461)
Q Consensus 292 ~~~ 294 (461)
...
T Consensus 346 k~p 348 (556)
T PF05918_consen 346 KSP 348 (556)
T ss_dssp T-T
T ss_pred hCc
Confidence 443
No 161
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.70 E-value=0.0096 Score=43.61 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhC
Q 044999 197 RERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQ 272 (461)
Q Consensus 197 ~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~ 272 (461)
|..++.+|...+..-+. ...+ ...+++++..+.++++.+|..|+.+|.|++... +..+.. ..+++.|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 44555556555443333 2222 347899999999999999999999999999752 223332 366788899999
Q ss_pred CCChhHHHHH
Q 044999 273 GPDSTGKEIS 282 (461)
Q Consensus 273 ~~~~~~~~~a 282 (461)
+.++.|+..|
T Consensus 79 D~d~~Vr~~a 88 (97)
T PF12755_consen 79 DPDENVRSAA 88 (97)
T ss_pred CCchhHHHHH
Confidence 9999988755
No 162
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.70 E-value=0.0092 Score=48.42 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHH
Q 044999 141 LEIVIDLLN--SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRL 216 (461)
Q Consensus 141 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~ 216 (461)
++.++..+. ...+++|..+.-++..+- +..+..+.+ -+-+.+-..+...+.+-...+..++..+-...+. ...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555444 356689999988888884 333333322 1223333344443345666777888887776666 555
Q ss_pred HHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-CChh-HHHHHHHHHHH
Q 044999 217 LVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-PDST-GKEISEDVFCI 288 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~~ 288 (461)
+...|+.+.++.++. .++...+..++.+|..-|.+...|..+.++| ++.|-+.++. ++.. ++..|+-.|+.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 667889999999999 7888999999999988888877777777777 9999999964 4555 78877777654
No 163
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.052 Score=53.96 Aligned_cols=209 Identities=14% Similarity=0.079 Sum_probs=139.2
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHH-hhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCc
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLA-RVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADG 87 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~-~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~ 87 (461)
..++.|..+..-..+.-+..+..+|. .+. -......+.++.+.+.+.. +. ...+.. ++.++.+|++. ++
T Consensus 504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~~~~v~~~~~s~~~~----d~--~~~en~E~L~altnLas~-s~ 574 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGERSYEVVKPLDSALHN----DE--KGLENFEALEALTNLASI-SE 574 (748)
T ss_pred cHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCchhhhhhhhcchhhh----hH--HHHHHHHHHHHhhcccCc-ch
Confidence 34556666666666666776666666 333 1111122366777777764 32 223333 89999999986 55
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR-NGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
..+..+...-+++.+-.++...++..|..++.++.||..+..-....+.+ ....+.....+...+......++.++..+
T Consensus 575 s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I 654 (748)
T KOG4151|consen 575 SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAI 654 (748)
T ss_pred hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccch
Confidence 66666878777788888888889998999999999999877666677776 55677777777776667777777777756
Q ss_pred h-CChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHH
Q 044999 167 A-LLREVRR-VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLV 227 (461)
Q Consensus 167 ~-~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~ 227 (461)
. ....... ..-...+...++..+.+++++++.+.+....|+...... ...+.+...++.+.
T Consensus 655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 5 3333333 222345788889999999999999999988885443333 44444444444333
No 164
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.65 E-value=0.6 Score=48.04 Aligned_cols=182 Identities=13% Similarity=0.081 Sum_probs=111.3
Q ss_pred HHHhcCCHHHHHhcCCCCC-----HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc----CCC----hHHHHH
Q 044999 92 EIGQSGVINSVLRLFPQSD-----DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN----SCN----DGTRRY 158 (461)
Q Consensus 92 ~~~~~~~l~~L~~ll~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~----~~~~~~ 158 (461)
.+.+.|++..+++++.+-. .. ....+.-|...+..-+.+|+.+.+.|+++.|++.+. ... +.+.+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~-ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRE-LLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHH-HHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 4557899999998886422 22 223333444555566799999999999999998663 333 466777
Q ss_pred HHHHHHHhhCChHH--HH---HHHhc--------CCHHHHHHHHcCC----CHHHHHHHHHHHHHhhcCchh-HHHHHhc
Q 044999 159 LLEILSALALLREV--RR---VLICL--------GGLRYLVEAVSFG----SMVSRERACQAIGLLAVTGRA-RRLLVEL 220 (461)
Q Consensus 159 a~~~L~~l~~~~~~--~~---~~~~~--------~~l~~l~~~l~~~----~~~~~~~a~~~L~~l~~~~~~-~~~~~~~ 220 (461)
.+.++..+...... .. ..... .-+..+++.+.+. ++.+....+++|..|+...+. .+.+++
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~- 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE- 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-
Confidence 77776666522211 11 11111 1366677777655 578899999999999998887 555544
Q ss_pred CChHHHHHhcc---cCCHHHHHHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCCChh
Q 044999 221 GVIPGLVELFH---IGDWTTKLVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGPDST 277 (461)
Q Consensus 221 ~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~~~~ 277 (461)
.+...+++=+ ...++- ...+.+++.++.. ...+..+++.|++...++.+...-|.
T Consensus 270 -~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 270 -HFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred -HHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 1222222111 111111 2335566666655 23467788889998888877655443
No 165
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=1.1 Score=46.98 Aligned_cols=228 Identities=13% Similarity=0.128 Sum_probs=141.8
Q ss_pred HHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-chhhhh
Q 044999 184 YLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-YITPVA 259 (461)
Q Consensus 184 ~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 259 (461)
.+..... +.+..+|..+.+.|..++..+.......+ ......+.+-+++.....+...+.+|..|-.... .-..++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3344443 44789999999999999988443322222 2244555556666677778887888877765522 111222
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhc-----cCcc-cH-HHHHHHHHHHhccC--C--HHHHHHHHHHHHHhhCC
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILA-----VSEA-NA-NAIAEHLVRILREG--D--NEANAAAADVLWDLAGY 328 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-----~~~~-~~-~~i~~~l~~ll~~~--~--~~~~~~a~~~L~~l~~~ 328 (461)
. ..++-++-.++..+...++.+..+|..+. ..+. .+ ...++..+.++.-+ . ..+....+-++..+...
T Consensus 737 ~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 737 P-KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred H-HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 1 22444444447778888999888888775 1111 12 33334455554433 2 22222224444444422
Q ss_pred -CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999 329 -KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN 406 (461)
Q Consensus 329 -~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 406 (461)
......-.-.+.+..+..++.+.+++++..|+..+..++. .|+..-.......+|.+..+.++....++..+...|..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2222333334566777788889999999999999999988 66654444444578889998888899999999998888
Q ss_pred hcCCCc
Q 044999 407 FSEDPL 412 (461)
Q Consensus 407 l~~~~~ 412 (461)
|.+...
T Consensus 896 Lirkfg 901 (1176)
T KOG1248|consen 896 LIRKFG 901 (1176)
T ss_pred HHHHhC
Confidence 876654
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.64 E-value=0.0053 Score=46.24 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=59.7
Q ss_pred CHHHHHhcC-CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999 98 VINSVLRLF-PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 98 ~l~~L~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 167 (461)
.+..|+++| ++.++.+...|+.=+..++...|..+..+.+.|+-..+++++.++|++++..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 478888998 4557777888888888999988999999999999999999999999999999999987764
No 167
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.19 Score=50.68 Aligned_cols=345 Identities=11% Similarity=0.096 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCCHHH---HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 044999 71 QQAAAYCLKQIASQADGALATEIGQSGVINS---VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147 (461)
Q Consensus 71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~---L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l 147 (461)
|+.+..+|--|.+ .-+....+.+.|.-.- +.+.-..++.-..-.+.+.++.|+.++ .....|++.||+..|+..
T Consensus 326 ~~~~~q~l~~lge--y~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~v 402 (1516)
T KOG1832|consen 326 EKYCIQCLEILGE--YVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAV 402 (1516)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcC
Confidence 3447777777776 4444445555554222 222222233323445566666677555 455677788887777664
Q ss_pred hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc------CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999 148 LNSCNDGTRRYLLEILSALALLREVRRVLICL------GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG 221 (461)
Q Consensus 148 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (461)
=+-+. .-...-.+|+.+.......+.+... .++..-+.++......-+..+...+.-.-.....-..|-..+
T Consensus 403 pr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d 480 (1516)
T KOG1832|consen 403 PRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQD 480 (1516)
T ss_pred CCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 33221 1122234555555444443333322 345555666665443334333333222111111133334455
Q ss_pred ChHHHHHhccc--------CC-----------HHHHHHHHHHHHHHhc-----C-ccchhhhhhcCCHHHHHHHhCCCC-
Q 044999 222 VIPGLVELFHI--------GD-----------WTTKLVAGNTLGVVAA-----H-VEYITPVAEAGAIPLYAELLQGPD- 275 (461)
Q Consensus 222 ~i~~L~~ll~~--------~~-----------~~~~~~a~~~L~~l~~-----~-~~~~~~~~~~g~i~~L~~ll~~~~- 275 (461)
.++.|+.+++. .+ ...-.+.|.+|+..-. . +..++.-+..|.....+.-+....
T Consensus 481 ~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~ 560 (1516)
T KOG1832|consen 481 SLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYK 560 (1516)
T ss_pred HHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCC
Confidence 66666666652 11 1223355666654321 1 333555555555555444333221
Q ss_pred -----hhHHHHHHHHHHHhc-cCcc-------cHHHHH-----HHHHHHhccC--------CHHHHHHHHHHHHHhhCCC
Q 044999 276 -----STGKEISEDVFCILA-VSEA-------NANAIA-----EHLVRILREG--------DNEANAAAADVLWDLAGYK 329 (461)
Q Consensus 276 -----~~~~~~a~~~L~~l~-~~~~-------~~~~i~-----~~l~~ll~~~--------~~~~~~~a~~~L~~l~~~~ 329 (461)
.+..+..++-+..+. ..+. ..+.+. ..++.+.... ..+....|+..|..+..-|
T Consensus 561 P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP 640 (1516)
T KOG1832|consen 561 PLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP 640 (1516)
T ss_pred cchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecc
Confidence 112222222222211 1110 011111 3333333211 2356678888888887778
Q ss_pred CchhHHhhc--------CCHHHHHHhhc----CCCHHHHHHHHHHHHHhcC-ChhhHH----------------------
Q 044999 330 HSVPVIRNS--------GAIPILVNLLR----GENDEVREKVSGAIAQLSY-NEADRV---------------------- 374 (461)
Q Consensus 330 ~~~~~l~~~--------g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~-~~~~~~---------------------- 374 (461)
+.+..+... .++..+++... -.+++++..|+.+|-|+.. .|+++.
T Consensus 641 ~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~k 720 (1516)
T KOG1832|consen 641 DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTK 720 (1516)
T ss_pred hHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCc
Confidence 887776621 24444444332 1368999999999999888 434322
Q ss_pred -------------HHHhCCChHHHHHhccCC-----CHHHHHHHHHHHHHhcCCCcchHHHHHh
Q 044999 375 -------------ALADAGAVPIMIELLHDE-----SEELRDNAAESLINFSEDPLQHERISEA 420 (461)
Q Consensus 375 -------------~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 420 (461)
.+...+||..|+++++.. ...+|..|+.+|.-|+++++.+..+.+.
T Consensus 721 s~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL 784 (1516)
T KOG1832|consen 721 SAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL 784 (1516)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence 223457899999999653 4678999999999999999988777654
No 168
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.60 E-value=0.41 Score=41.39 Aligned_cols=196 Identities=17% Similarity=0.149 Sum_probs=124.5
Q ss_pred hcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc-
Q 044999 178 CLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY- 254 (461)
Q Consensus 178 ~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~- 254 (461)
....++.++..+.+. .+-+|-.|..+|+.+. .....+.+-++.+++...+++.+..++..+-.....
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 345678888877665 4567778888888874 223455555566566666777666666665432110
Q ss_pred ----hhhh--------hhcCCHHHHHHHhCCCCh--hHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHH
Q 044999 255 ----ITPV--------AEAGAIPLYAELLQGPDS--TGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAAD 320 (461)
Q Consensus 255 ----~~~~--------~~~g~i~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~ 320 (461)
...+ ...+-+..+-..+.+.+. --|+.+...|.|+.... -+..+.+-+..++.-.|..++.
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----aI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----AINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----HHHHHHHhcccchHHHHHHHHH
Confidence 0000 111224445554444422 23444555555543321 1245566666667788889999
Q ss_pred HHHHhhCCCCchhHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHH
Q 044999 321 VLWDLAGYKHSVPVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRD 398 (461)
Q Consensus 321 ~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 398 (461)
+++.|-. .-.++.|.+.|.+ .++-||..|+.+|+.++... +++.|.+++.+..+-+++
T Consensus 210 VfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~----------~~~vL~e~~~D~~~vv~e 269 (289)
T KOG0567|consen 210 VFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED----------CVEVLKEYLGDEERVVRE 269 (289)
T ss_pred HHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH----------HHHHHHHHcCCcHHHHHH
Confidence 9988843 3467888888764 46889999999999998633 378888899888999999
Q ss_pred HHHHHHHHhc
Q 044999 399 NAAESLINFS 408 (461)
Q Consensus 399 ~a~~~L~~l~ 408 (461)
.+..+|-.+-
T Consensus 270 sc~valdm~e 279 (289)
T KOG0567|consen 270 SCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 169
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.12 Score=48.41 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC----ChHH----HHHHHhcCCHHHH
Q 044999 114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL----LREV----RRVLICLGGLRYL 185 (461)
Q Consensus 114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~----~~~~~~~~~l~~l 185 (461)
+..+.+...-+.-+..-......-......+...+.+.....|..+.+++.+++. +-++ ...+... .+..+
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~ 486 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKM 486 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHH
Confidence 3334444443333333333334444556667777777778899999999999872 1112 1111111 22233
Q ss_pred HHHHc---CCCHHHHHHHHHHHHHhhcCchh-H-HH--HHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcCccch--
Q 044999 186 VEAVS---FGSMVSRERACQAIGLLAVTGRA-R-RL--LVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAHVEYI-- 255 (461)
Q Consensus 186 ~~~l~---~~~~~~~~~a~~~L~~l~~~~~~-~-~~--~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~-- 255 (461)
...-. ..+..++..+.++|+|+...-+. . -. ....+.+..++. ..-.....++-++|.+++||-.++..+
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 32221 22568899999999998654332 1 00 111122222222 222446689999999999999885442
Q ss_pred hhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccHHHH
Q 044999 256 TPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANANAI 299 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~i 299 (461)
..-.....++.|..++.+. +-.+|.+|+.+|..-......-..+
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~ 611 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQY 611 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHH
Confidence 2222335678888888655 7899999999998776655544433
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.45 E-value=0.15 Score=46.60 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=107.0
Q ss_pred CcHHHhHHHHH-HHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 6 TNWEEAFNRFE-QAVVSGSEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 6 ~~~~~~~~~l~-~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
...+..++.++ ..+.+.++.+|..|.+++|-.+ +. .+.. .++.+.+.++. ++..++..|+.++..+
T Consensus 22 ~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~------~~~~v~~~al~~l~Dl 91 (298)
T PF12719_consen 22 ISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK------DDEEVKITALKALFDL 91 (298)
T ss_pred chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHH
Confidence 34557777765 8889999999999999999999 44 2333 77888888864 3566777799999988
Q ss_pred Hhc-CCchhHHH------HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC----
Q 044999 82 ASQ-ADGALATE------IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS---- 150 (461)
Q Consensus 82 ~~~-~~~~~~~~------~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---- 150 (461)
... |....... ......+..+.+.+.+.+++++..++..+..|...+.-.- ....+..|+-+.-+
T Consensus 92 l~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~ 167 (298)
T PF12719_consen 92 LLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTE 167 (298)
T ss_pred HHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccC
Confidence 863 21111111 1123457778888888899999999999997665442221 11223333333222
Q ss_pred CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC
Q 044999 151 CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG 192 (461)
Q Consensus 151 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 192 (461)
.+..+|..-...+-..+......+..+...+++.+-.+.+..
T Consensus 168 ~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 168 DNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 233555555555556664333333444455666666665543
No 171
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.45 E-value=0.024 Score=47.36 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHHHHHhccCcccHHHHH---------------------HHHHHHhcc------CCHHHHHHHHHHHHHh
Q 044999 273 GPDSTGKEISEDVFCILAVSEANANAIA---------------------EHLVRILRE------GDNEANAAAADVLWDL 325 (461)
Q Consensus 273 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~---------------------~~l~~ll~~------~~~~~~~~a~~~L~~l 325 (461)
+.+......++..|.|++..++.+..+. ..|++.+.. ....--...+.++.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3344556667777788877666554332 556666544 2344566888999999
Q ss_pred hCCCCchhHHhhcC--C--HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC---CChHHHHHhc
Q 044999 326 AGYKHSVPVIRNSG--A--IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA---GAVPIMIELL 389 (461)
Q Consensus 326 ~~~~~~~~~l~~~g--~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~i~~L~~ll 389 (461)
+..++.++.+.... . +..|+.++...+..-|..++.+|.|+|.+.+....+... +++|.|+--+
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 99999999999543 4 778888888887767778899999999977777777663 4455555544
No 172
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.45 E-value=0.013 Score=47.59 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=96.2
Q ss_pred HHHHHHhC--CCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhH-Hh
Q 044999 265 PLYAELLQ--GPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPV-IR 336 (461)
Q Consensus 265 ~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~-l~ 336 (461)
..++..+. ..++++|..+.-++..+- +..+.... +.+-..+..++.+-...+..++..+-.. ++.... +.
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~ 83 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL 83 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 34444443 357889999888888773 33333332 5555556555445666777777777643 444444 44
Q ss_pred hcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHH-HHHHHHHHHHH
Q 044999 337 NSGAIPILVNLLR--GENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEE-LRDNAAESLIN 406 (461)
Q Consensus 337 ~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~a~~~L~~ 406 (461)
..|+++.+..++. ..+..++..++.+|..=|.++.+|..+.+++ ++.|.+..+ ++++. ++..|+-.|+.
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7788999999999 7788899999998888888888777777764 999999994 56666 78888877764
No 173
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.40 E-value=0.027 Score=47.03 Aligned_cols=118 Identities=9% Similarity=-0.021 Sum_probs=82.5
Q ss_pred cCCHHHHHHHHHHHHHHhcCccchhhhhhc----------------CCHHHHHHHhCC------CChhHHHHHHHHHHHh
Q 044999 232 IGDWTTKLVAGNTLGVVAAHVEYITPVAEA----------------GAIPLYAELLQG------PDSTGKEISEDVFCIL 289 (461)
Q Consensus 232 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------g~i~~L~~ll~~------~~~~~~~~a~~~L~~l 289 (461)
++.......++..|.|++..+.....+... ..+..|+.++.. ...+-....+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 344456667788899998886665544432 245667777654 2345567788999999
Q ss_pred ccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc---CCHHHHHHhhc
Q 044999 290 AVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS---GAIPILVNLLR 349 (461)
Q Consensus 290 ~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~---g~i~~L~~ll~ 349 (461)
+..++.|..+. ..|+..+.+.+..-|..++.+|.|+|...+....+... +++|.|+--+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999998887 23444556667788889999999999988887777764 34555444443
No 174
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.36 E-value=0.076 Score=46.28 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC
Q 044999 114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF 191 (461)
Q Consensus 114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~ 191 (461)
...+...+-.++--++..+..+.+...++.++.+|+. ..+.++..++.+|..+. .++.+.+.|-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 3345566667777788999999999999999999954 56788999999888887 889999999999999999999987
Q ss_pred C--CHHHHHHHHHHHHHhh
Q 044999 192 G--SMVSRERACQAIGLLA 208 (461)
Q Consensus 192 ~--~~~~~~~a~~~L~~l~ 208 (461)
. +.+++..++..|.-..
T Consensus 188 ~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccHHHhHHHHHHHHHHH
Confidence 7 6688888888776543
No 175
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.3 Score=44.33 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=40.7
Q ss_pred ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
..+.+-.++++...-+...|+.++.++... +-..+.. .+..|-.++.++...+|..|.++|..++.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345555566666667777777777776543 1111111 45666667777777788888887777743
No 176
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.33 E-value=0.23 Score=46.61 Aligned_cols=237 Identities=16% Similarity=0.117 Sum_probs=128.5
Q ss_pred HHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999 8 WEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS 83 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~ 83 (461)
+.+.++.++.-+.++ ...+|..++..|..-+ +++.+..++. ..+.+++.+.. ..+++ .-..++.++..+..
T Consensus 19 f~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~----~~~d~-~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 19 FADEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSD----APDDD-ILALATAAILYVLS 93 (361)
T ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhcc----ccchH-HHHHHHHHHHHHHc
Confidence 556667777777743 4578888888888777 9999999888 89999999964 44433 22223344444444
Q ss_pred cCCchhHHHHHhcCCHHHHHhcCCC--C---CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---------
Q 044999 84 QADGALATEIGQSGVINSVLRLFPQ--S---DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN--------- 149 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~L~~ll~~--~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~--------- 149 (461)
. +......+.+.+.+..+.++++. . .......... ++.. ..+. .+..+.+.+.
T Consensus 94 ~-d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~lsk----~~~~-----~~~~~~~~~~~~~~~~~~~ 160 (361)
T PF07814_consen 94 R-DGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLSK----VQQK-----SRSLCKELLSSGSSWKSPK 160 (361)
T ss_pred c-CCcchhhhhchhHHHHHHHHhccccccccccchhhhhhh---hhhH----HHHH-----HHHHHHHHHhccccccccC
Confidence 2 44444444455666776777771 1 1110000000 1110 0000 1111222220
Q ss_pred CCChHHHHHHHHHHHHhh---------------CChHHHHHHHhcCCHHHHHHHHcC----CC------------HHHHH
Q 044999 150 SCNDGTRRYLLEILSALA---------------LLREVRRVLICLGGLRYLVEAVSF----GS------------MVSRE 198 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~---------------~~~~~~~~~~~~~~l~~l~~~l~~----~~------------~~~~~ 198 (461)
......+..|+.++..++ ..+.+++.+...|++..++..+.+ .+ ...-.
T Consensus 161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~ 240 (361)
T PF07814_consen 161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE 240 (361)
T ss_pred CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence 111233444444444442 123446677777899999998862 11 12345
Q ss_pred HHHHHHHHhhcCchh-HHHHHh--cCCh-HHHHHhcc---cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcC
Q 044999 199 RACQAIGLLAVTGRA-RRLLVE--LGVI-PGLVELFH---IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAG 262 (461)
Q Consensus 199 ~a~~~L~~l~~~~~~-~~~~~~--~~~i-~~L~~ll~---~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g 262 (461)
.++++|-+.+...+. +..... .+.. ..+..++. .........+++.+.|++.+ ++.+..+...+
T Consensus 241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 778888888766654 554444 2222 22222333 22344467888899999988 66666666553
No 177
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.32 E-value=0.72 Score=41.02 Aligned_cols=203 Identities=11% Similarity=0.080 Sum_probs=143.3
Q ss_pred HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH--cCCHHHHHHHhcCC--ChHHHHHHHHHHHHhh
Q 044999 92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR--NGGLEIVIDLLNSC--NDGTRRYLLEILSALA 167 (461)
Q Consensus 92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~ 167 (461)
.+..+|.+..+++.+...+.+.+..++....++-......+.-.++ ..-.+.+-.++... .+++...+-..+....
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 5668899999999999888887887777777666533222211111 11122333333333 2566666667777777
Q ss_pred CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCC----hHHHHHhcccCCHHHHHHHH
Q 044999 168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGV----IPGLVELFHIGDWTTKLVAG 242 (461)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~----i~~L~~ll~~~~~~~~~~a~ 242 (461)
.++...+.+....-......+.+.++-++...|..+...+...+.. ...+...+. .+.--.++.+++--++..+.
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 8888899999999999999999999889999999999888776665 444444332 33356688899999999999
Q ss_pred HHHHHHhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc
Q 044999 243 NTLGVVAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA 294 (461)
Q Consensus 243 ~~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 294 (461)
..++.+-.+..+...+.+ ..-+..+..+|+++...+|..|-....-+..++.
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999998887666554443 2457778888898888888888887777755543
No 178
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.28 E-value=0.047 Score=55.00 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=103.9
Q ss_pred CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH------HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999 262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA------IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI 335 (461)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 335 (461)
.++|.+++.+...+...+.+-..+|.++-.+-+.... +.|.|++.|.-.+..+|..+..++..+.........-
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 5689999998877888888888899888554333211 1188888888899999999999998887543322222
Q ss_pred hhcCCHHHHHHhhcCCC---HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHH
Q 044999 336 RNSGAIPILVNLLRGEN---DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAES 403 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 403 (461)
.-.-.+|.+..+-.+.+ ..+|..|+.+|..|.+ -|...-.-.+..++..|+..+.++..-+|..|..+
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 23346788887776655 5689999999999999 56544444455678888888988888888888765
No 179
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.26 E-value=0.75 Score=46.76 Aligned_cols=240 Identities=13% Similarity=0.088 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh
Q 044999 193 SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL 271 (461)
Q Consensus 193 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll 271 (461)
.+.+..++..++...+........+.+ ..+...+..+. +..+.++..|+.+++..+...-... ...+++..|..+.
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qla 539 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLA 539 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHc
Confidence 444455666666665554332111111 12333333333 5566677788888877773211111 1135677888888
Q ss_pred CCCChhHHHHHHHHHHHhcc-CcccHHH----HHHHHHHHh--ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHH
Q 044999 272 QGPDSTGKEISEDVFCILAV-SEANANA----IAEHLVRIL--REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPIL 344 (461)
Q Consensus 272 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~----i~~~l~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L 344 (461)
...+.++......+|+.... +++.... +.|....++ .+.+|.+...+-.++..++....+..-+.+ ..+|.+
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPsl 618 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSL 618 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHH
Confidence 87788888888888888854 4433222 226666665 355788888888888888865555444443 578999
Q ss_pred HHhhcCCC----HHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCcchHHHH
Q 044999 345 VNLLRGEN----DEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERIS 418 (461)
Q Consensus 345 ~~ll~~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 418 (461)
+..+..+. .....-++..|..+.+ .|.--....-.-+.|++.+.. ++++.+..+++.++|..+...... .+.
T Consensus 619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e--q~~ 696 (1005)
T KOG2274|consen 619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE--QLL 696 (1005)
T ss_pred HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH--HHH
Confidence 99998655 5566677777777777 222222223334678888865 778899999999999988766432 222
Q ss_pred Hh---hCCchHHhHHHHHHHhhhc
Q 044999 419 EA---IGIPSFQSMQSRLTRIRAS 439 (461)
Q Consensus 419 ~~---~~~~~~~~l~~~l~~~~~~ 439 (461)
+- .|.+ ++.+.+-++++-++
T Consensus 697 t~~~e~g~~-~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 697 TWHDEPGHN-LWYIMQVLSQLLDP 719 (1005)
T ss_pred hhccCCCcc-HHHHHHHHHHHcCC
Confidence 21 2333 45666656555544
No 180
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.25 E-value=0.012 Score=44.26 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=58.1
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 340 AIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 340 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.+..|+++|. +.++.+..-|+.=|+.+++ .|..+..+.+.|+-..+++++.+++++++..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4778999994 4467778888899999999 9999999999999999999999999999999999988764
No 181
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=96.24 E-value=0.33 Score=46.34 Aligned_cols=150 Identities=18% Similarity=0.116 Sum_probs=113.3
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchhHH
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRARR 215 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~~~ 215 (461)
....+++.+.+++...+..|+..+..++.+......++...++..|..++.+++. ++...+++++..+-.+.-...
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3556788888888888888999999999999999999999999999999988743 666777777777765554422
Q ss_pred HHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 216 LLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 216 ~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
..+...++.....+.. ..+..+...|+..|.++.... ..+..+.+.--+..++..+...+..++..|...+-.+
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2233334444444443 335567778888888888774 4666666777799999999999999988877777666
No 182
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.16 E-value=0.031 Score=52.07 Aligned_cols=289 Identities=13% Similarity=0.044 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-----ChhhHHHHHHcCCHHHH
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF-----GNENRVIVARNGGLEIV 144 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~g~i~~L 144 (461)
++.++...|..++.. ... ...........+...+.+..++++..++.++..+-.. .++.-+.-..-|.+...
T Consensus 271 ~rle~~qvl~~~a~~--~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 271 MRLEALQVLTLLARY--FSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 334477777777762 221 1111222334455667788999999999888855431 11111111111111111
Q ss_pred HH-------HhcCCChHHHHHHHHHHHHhhCCh-----H---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999 145 ID-------LLNSCNDGTRRYLLEILSALALLR-----E---VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV 209 (461)
Q Consensus 145 ~~-------ll~~~~~~~~~~a~~~L~~l~~~~-----~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 209 (461)
.. ..++..+..+..+|..+.++...+ + .....+..|+- ++.+.-++..|.+++..+.-
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVL 420 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVL 420 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEe
Confidence 11 122334466777777777776211 1 11111112211 23344577788888888777
Q ss_pred CchhH-HHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-----ccchhhhhhc-C-CHHHHHHHhC---CCChhH
Q 044999 210 TGRAR-RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-----VEYITPVAEA-G-AIPLYAELLQ---GPDSTG 278 (461)
Q Consensus 210 ~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~-g-~i~~L~~ll~---~~~~~~ 278 (461)
++..+ ....-.++...+...+.+..-..++.++++++|++.. +..+..-.+. | .+..++..-. .....+
T Consensus 421 Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV 500 (728)
T KOG4535|consen 421 HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKV 500 (728)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 77663 3333345667777777777788999999999999864 2211111111 1 1222222221 225679
Q ss_pred HHHHHHHHHHhccCcc------cHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCchh--HHhhcCCHHHHHH
Q 044999 279 KEISEDVFCILAVSEA------NANAIAEHLVRILR----EGDNEANAAAADVLWDLAGYKHSVP--VIRNSGAIPILVN 346 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~~------~~~~i~~~l~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~--~l~~~g~i~~L~~ 346 (461)
+.++.++|.|+.+.-. ++..+-....+++. .....++-+++.+++||..++...- .-......+.|..
T Consensus 501 ~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~ 580 (728)
T KOG4535|consen 501 KSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTS 580 (728)
T ss_pred hhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHH
Confidence 9999999999864332 12222233333332 3356799999999999998865421 1123345777888
Q ss_pred hhcC-CCHHHHHHHHHHHHHhcC
Q 044999 347 LLRG-ENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 347 ll~~-~~~~v~~~a~~~L~~l~~ 368 (461)
++.+ .+..+|.+|+.+|..-..
T Consensus 581 Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 581 LVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHhccceEeehhhhhhcCCCC
Confidence 8764 467788899888877666
No 183
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.12 E-value=0.073 Score=46.40 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc
Q 044999 314 ANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH 390 (461)
Q Consensus 314 ~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~ 390 (461)
....|+..|--++ -+|..+..+.+...++.+++++. ...+.++..++.+|..+.. ++.+...|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3456778888888 67899999999999999999995 4578899999988887777 9999999999999999999996
Q ss_pred C--CCHHHHHHHHHHHHHhcCC
Q 044999 391 D--ESEELRDNAAESLINFSED 410 (461)
Q Consensus 391 ~--~~~~~~~~a~~~L~~l~~~ 410 (461)
+ .+.+++..+.+.|.-...+
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 5 5788999998888766433
No 184
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.09 E-value=0.023 Score=38.85 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCcchHHHHHhh
Q 044999 356 REKVSGAIAQLSYNEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDPLQHERISEAI 421 (461)
Q Consensus 356 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~ 421 (461)
.+.+++++++++.++..-..+.+.+.++.++++.. ++...+|-.+..+|..++...++.+.|.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46789999999998887888888899999999994 6788999999999999999999998887654
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.04 E-value=0.24 Score=45.26 Aligned_cols=168 Identities=16% Similarity=0.157 Sum_probs=109.2
Q ss_pred HHHHH-hcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHH
Q 044999 99 INSVL-RLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRV 175 (461)
Q Consensus 99 l~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~ 175 (461)
++.|+ ..+++.++.+|..+..|+.-.+--+.+.... .++.+...++..++.++..|+.++..+. .+.+.-..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 34444 6788999999999999999666655322222 2566777777778899999999999987 22222222
Q ss_pred HH-------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hcc---cCCHHHHHHHHHH
Q 044999 176 LI-------CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE-LFH---IGDWTTKLVAGNT 244 (461)
Q Consensus 176 ~~-------~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~---~~~~~~~~~a~~~ 244 (461)
.. ....+..+.+++.+.+++++..++..++.|-..+.... ...++..|+- ++. .++...+..-...
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 21 23477788889999999999999999999876665422 1122333333 332 2345566655556
Q ss_pred HHHHhcCccchhhhhhcCCHHHHHHHhCCC
Q 044999 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
+-..+......+......+++.+..+.+..
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 666666644334555566677777766544
No 186
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.51 Score=46.83 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=70.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNL-LRGENDEVREKVSGAIAQLSY-NEADRVALAD 378 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 378 (461)
+.+-+++.+.+|-.|...+..+..--.... +.+++..|+.. .++.+.+||+.|..+|+-++. +|+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence 344456666677777666554432221111 23456666666 567899999999999998888 776
Q ss_pred CCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCcchHHH
Q 044999 379 AGAVPIMIELL-HDESEELRDNAAESLINFSEDPLQHERI 417 (461)
Q Consensus 379 ~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l 417 (461)
.++..+++| .+.|+-+|..++.+|.-.|.....++.+
T Consensus 589 --~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 589 --QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred --hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 366677777 5679999999999998887776665444
No 187
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=1.6 Score=43.38 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC
Q 044999 113 FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG 192 (461)
Q Consensus 113 ~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~ 192 (461)
+...++..+..+-..+.+.- .-.|.+..+++..++.+..+|...+..|..+..........+-.+....+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d~e~D---lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED---LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccCchhh---HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 34445555555443332222 234456677777788899999999999999986554455555556677777777788
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhh
Q 044999 193 SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPV 258 (461)
Q Consensus 193 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~ 258 (461)
.+.+|.+|..+|..+-..+.+. +..+...+..+++ ++++++|+. +|.|++.++.....+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCI 198 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhH
Confidence 8899999999999997544331 1235677778887 678899988 556666554444333
No 188
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.92 E-value=2.4 Score=43.40 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=139.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHH
Q 044999 107 PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYL 185 (461)
Q Consensus 107 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l 185 (461)
.+..|.....+...+...+.....+...+.. .+...+..+. +..+.++..|+++++..+....... ...+++..+
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHH
Confidence 3445554445666666555433222222211 1233333333 3445788888888888872211111 123466777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCC
Q 044999 186 VEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGA 263 (461)
Q Consensus 186 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 263 (461)
..+....+.++......+|+..+..++......++.+.|.++.++. +++|.+...+-.++..++....+...+. ...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 7777777889999999999999988888777777778888888765 6677777777777777766433333222 234
Q ss_pred HHHHHHHhCCCC----hhHHHHHHHHHHHhccCcc--cHHHHH----HHHHHHh-ccCCHHHHHHHHHHHHHhhCC
Q 044999 264 IPLYAELLQGPD----STGKEISEDVFCILAVSEA--NANAIA----EHLVRIL-REGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 264 i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~--~~~~i~----~~l~~ll-~~~~~~~~~~a~~~L~~l~~~ 328 (461)
+|.+++.+..+. +.....++..|..+..+.+ -...+. |++.++. .+++.++...+..||+.+...
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 899999998775 6677777777776643322 222222 8888875 667888999999999988754
No 189
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.90 E-value=1.2 Score=41.98 Aligned_cols=221 Identities=17% Similarity=0.165 Sum_probs=130.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhccC---hhhHHHHHHcCCHHHHHHHhcCCC-------hHHHHHHHHHHHHhhCChH
Q 044999 102 VLRLFPQSDDSFRTVLVKCLRVFVTFG---NENRVIVARNGGLEIVIDLLNSCN-------DGTRRYLLEILSALALLRE 171 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~~~ 171 (461)
+..+++..+.+-+-.+...+..++..+ ..+++.+.+.=|++.+-+++.+.+ .-.+..++.+|..+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 455556555553544554445777633 245677788878888888886542 2456778889999998776
Q ss_pred H--HHHHHhcCCHHHHHHHHcCC-CH------HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC-HHHHHHH
Q 044999 172 V--RRVLICLGGLRYLVEAVSFG-SM------VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD-WTTKLVA 241 (461)
Q Consensus 172 ~--~~~~~~~~~l~~l~~~l~~~-~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a 241 (461)
. .+.+++. +|.+.+++... ++ .+...+..+|..++........+...|+++.+.++-.-++ ...+..+
T Consensus 96 lAsh~~~v~~--IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVSR--IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHHh--hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 5 3455544 88888888654 22 2677889999999999888888899999999997665332 2333444
Q ss_pred HHHHHHHhcC----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-------cccH-----HHHHHHHHH
Q 044999 242 GNTLGVVAAH----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-------EANA-----NAIAEHLVR 305 (461)
Q Consensus 242 ~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-------~~~~-----~~i~~~l~~ 305 (461)
+.++.-+... ++....+.. .+..+..=+...+...+...+..|..+-.. ++-+ ..+...+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~ 251 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA 251 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence 4444333322 222222211 122232223333455566666666543111 1112 112266777
Q ss_pred HhccC-CHHHHHHHHHHHHHhh
Q 044999 306 ILREG-DNEANAAAADVLWDLA 326 (461)
Q Consensus 306 ll~~~-~~~~~~~a~~~L~~l~ 326 (461)
+|.+. .|.-|..|+....++.
T Consensus 252 IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 252 ILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHhcccCchhcChHHHHHHHHH
Confidence 77665 5666666666666554
No 190
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.91 Score=45.96 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=138.1
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchh-HHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQD-ILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~-~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
..+-+..-+..+.++...+|-.|...+.++. +-.... ...+ ++...++.|+. +|+-+-..|...+..||+-
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd------edsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD------EDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc------cCceeeHHHHHHHHHHHHh
Confidence 3444555566666777899999999999999 333333 2333 99999999986 4455666688888888862
Q ss_pred CCchhHHHHHhcCCHHHHHh-cCCC---CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLR-LFPQ---SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLL 160 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~-ll~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~ 160 (461)
.....++.+.. ..+. ..++.+.....++.++...-.+....... -.+..++...++++...|..++
T Consensus 799 ---------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~ 868 (982)
T KOG4653|consen 799 ---------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSL 868 (982)
T ss_pred ---------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHH
Confidence 23345666665 3332 22455666677777766533233222222 4566777777877778899999
Q ss_pred HHHHHhhCChHH--HHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHH---hcCChHHHHHhccc-
Q 044999 161 EILSALALLREV--RRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLV---ELGVIPGLVELFHI- 232 (461)
Q Consensus 161 ~~L~~l~~~~~~--~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~---~~~~i~~L~~ll~~- 232 (461)
..++++|.-... ...+.+ ++..++.+...+ +.-+|+.|...+..+-.+... .-.+. ..+....+....+.
T Consensus 869 a~lg~Lcq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~ 946 (982)
T KOG4653|consen 869 ANLGQLCQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQH 946 (982)
T ss_pred HHHHHHHHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999832221 222222 355556665544 678999999999888665543 11111 12344455555553
Q ss_pred CCHHHHHHHHHHHHHH
Q 044999 233 GDWTTKLVAGNTLGVV 248 (461)
Q Consensus 233 ~~~~~~~~a~~~L~~l 248 (461)
++..++.+++.++..+
T Consensus 947 ~dd~~klhaql~leei 962 (982)
T KOG4653|consen 947 DDDGLKLHAQLCLEEI 962 (982)
T ss_pred chhHHHHHHHHHHHHH
Confidence 3445666776666554
No 191
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.35 Score=48.74 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=137.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA 261 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 261 (461)
....+..+.++-+.++..++..+..+....+....+...+++...++.+++.++.+--.|...+..||.- ...
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch
Confidence 4444555566666889999999999999887677788889999999999999999998988888888763 334
Q ss_pred CCHHHHHHHhCCC----ChhHHHHHHHHHHHhcc--Cccc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC--C
Q 044999 262 GAIPLYAELLQGP----DSTGKEISEDVFCILAV--SEAN---ANAIAEHLVRILREGDNEANAAAADVLWDLAGYK--H 330 (461)
Q Consensus 262 g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~--~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~--~ 330 (461)
.++|.+.+.-.+. .++.+-..-.++.++.. ++-. +..+...++...++++.+-|..++..++++|.-. .
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 4577777743222 13444444466666532 2222 2233366677777777788999999999998532 2
Q ss_pred chhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCChhhH-HHH---HhCCChHHHHHhccC-CCHHHHHHHHHHH
Q 044999 331 SVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSYNEADR-VAL---ADAGAVPIMIELLHD-ESEELRDNAAESL 404 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~---~~~~~i~~L~~ll~~-~~~~~~~~a~~~L 404 (461)
..+.+.+ .+..++.+.+ ++++.+|+.|+..+..+-.+.+.. -.+ ...+....+..+.+. .++.++..++.++
T Consensus 882 vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 882 VSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 2222322 4445555554 557789999999888887733311 011 111223444444433 3444555555555
Q ss_pred HHh
Q 044999 405 INF 407 (461)
Q Consensus 405 ~~l 407 (461)
-.+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 433
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.79 E-value=0.19 Score=50.91 Aligned_cols=143 Identities=17% Similarity=0.152 Sum_probs=101.9
Q ss_pred cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhc-cCccc-
Q 044999 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILA-VSEAN- 295 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~- 295 (461)
...+|.+++.+...+...+..-..+|.++-.+-+. +.+.. ....|.|++.+.-+|..+|..+..++.-+. ..+.-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 34788888888866666677777778777665222 22222 256788899999999999999998887763 22222
Q ss_pred ---HHHHHHHHHHHhccCC---HHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999 296 ---ANAIAEHLVRILREGD---NEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363 (461)
Q Consensus 296 ---~~~i~~~l~~ll~~~~---~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L 363 (461)
-..++|.++.+=++.+ ..+|..|+.+|..|.+ -|...-...+..++..|...|.++.--+|..|..+=
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 2333366666655554 5789999999999997 566555556677888899999998888898887653
No 193
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=3.3 Score=43.26 Aligned_cols=217 Identities=17% Similarity=0.096 Sum_probs=129.0
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCchh-HHH
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGS-MVSRERACQAIGLLAVTGRA-RRL 216 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~-~~~ 216 (461)
++++.|+..+++.+..+|..|++.+..++..-+ ..+.+ .++...++++...+ +..--.++-+|+.++...-. -..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 467778888889999999999999999994332 22222 24555566554332 33334788888888776543 222
Q ss_pred HHhcCChHHHHHhcc--------cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHH
Q 044999 217 LVELGVIPGLVELFH--------IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVF 286 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 286 (461)
+. .+++.++.-+. +....+|..|+.+++.++.. +..-..+...=.-..++..+-+.+-..|+.|..++
T Consensus 418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 22 25666666554 23456899999999999876 22222222111122233334455667788888877
Q ss_pred HHhccC----cccHHH----------------------HH------HHHHH-Hhcc----CCHHHHHHHHHHHHHhhCC-
Q 044999 287 CILAVS----EANANA----------------------IA------EHLVR-ILRE----GDNEANAAAADVLWDLAGY- 328 (461)
Q Consensus 287 ~~l~~~----~~~~~~----------------------i~------~~l~~-ll~~----~~~~~~~~a~~~L~~l~~~- 328 (461)
...... |..... +. ..+++ ++.. =++.+++.++.+|.+|+..
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 655321 111110 00 33333 3333 3788999999999999843
Q ss_pred CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999 329 KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364 (461)
Q Consensus 329 ~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 364 (461)
++. ...+.++.++....+++...+.....+.+
T Consensus 576 pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 576 PKY----LADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred HHh----hcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 332 34567788888877777776654443333
No 194
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.1 Score=54.13 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=109.5
Q ss_pred CHHHHHHHhCC----CChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhhC-CCCchhHH
Q 044999 263 AIPLYAELLQG----PDSTGKEISEDVFCILA-VSEANANAIAEHLVRILR-EGDNEANAAAADVLWDLAG-YKHSVPVI 335 (461)
Q Consensus 263 ~i~~L~~ll~~----~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~-~~~~~~~~~a~~~L~~l~~-~~~~~~~l 335 (461)
+.|.+++..+. .+|+++..|.-+|+.+. ...+.+..-.+.++..+. +++|.+|.+++-+++.++. .|...+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~- 998 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP- 998 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch-
Confidence 45566666643 37899999999999984 455556666699999985 8899999999999999994 4444333
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
..+.|.+.|++.++.+|+.|..+|.+|..+. .+.-.|.++.+..++.+++++++.-|-.....|+...
T Consensus 999 ----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 999 ----WTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred ----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 3456889999999999999999999998633 3344577999999999999999999997777776544
No 195
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.59 E-value=0.87 Score=42.81 Aligned_cols=172 Identities=12% Similarity=0.002 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH
Q 044999 111 DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV 189 (461)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l 189 (461)
.+-+..+...+..+...+....=.-.-..++..+++.|+. .++..+..|+++|..++.+...+-.=-..-.+..+++.-
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 3335556655665554442221111112245567777877 778899999999999996544432111112455555555
Q ss_pred cCCCHHH-HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHH
Q 044999 190 SFGSMVS-RERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLY 267 (461)
Q Consensus 190 ~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L 267 (461)
.+...++ +..+=.++..++.+.+.+. +..+..++...+...-..++..+..+... ....-..+-..+.|.+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 5555544 4444455666666666532 33344444445555555555566666554 1111111223667888
Q ss_pred HHHhCCCChhHHHHHHHHHHHh
Q 044999 268 AELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 268 ~~ll~~~~~~~~~~a~~~L~~l 289 (461)
++-..+.+..+|+.+..+|..+
T Consensus 454 iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 454 IQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HHHhcCchHHhhhhHHHhHHHH
Confidence 8888888888888887777655
No 196
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.55 E-value=0.026 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVT 210 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~ 210 (461)
+|.+++.++++++++|..|+.+|+.++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998753
No 197
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.48 E-value=1.5 Score=41.35 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=75.7
Q ss_pred CCHHHHHhcCCCC---CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CC---ChHHHHHHHHHHHHhhCC
Q 044999 97 GVINSVLRLFPQS---DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SC---NDGTRRYLLEILSALALL 169 (461)
Q Consensus 97 ~~l~~L~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~---~~~~~~~a~~~L~~l~~~ 169 (461)
..+..|...+++. .+.+-..++..+..+...+|..-..+.+.|.++.+++.+. .. ..++...--.++..+|.+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN 185 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN 185 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence 3445555555543 4667778888888888888888999999999999999887 33 335555666888999999
Q ss_pred hHHHHHHHhcCCHHHHHHHHcCC
Q 044999 170 REVRRVLICLGGLRYLVEAVSFG 192 (461)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~l~~~ 192 (461)
....+.+.+.+.++.+++++.+.
T Consensus 186 ~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 186 NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHHhcChHHHHHHHhCCH
Confidence 99999999999999999988765
No 198
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.37 E-value=0.033 Score=30.93 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 044999 12 FNRFEQAVVSGSEALQVKALTKLARVS 38 (461)
Q Consensus 12 ~~~l~~ll~~~~~~~~~~a~~~l~~la 38 (461)
+|.+.++++++++.||..|+.+|+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999999886
No 199
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.32 E-value=2 Score=38.36 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=148.7
Q ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-----HHHHHh-cCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999 174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-----RRLLVE-LGVIPGLVELFHIGDWTTKLVAGNTLGV 247 (461)
Q Consensus 174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 247 (461)
..+.++|.+..++..+...+-+.+..++.+..++-...-. ...+.. ...+..|+.--.. .+++-..+-..+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 4678889999999999888888888888888887654332 222222 2334444443112 46666666677777
Q ss_pred HhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHHHH---------HHHHHHhccCCHHHHHH
Q 044999 248 VAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANAIA---------EHLVRILREGDNEANAA 317 (461)
Q Consensus 248 l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~ 317 (461)
...++...+.+..+.-.......+..+.-++..-|..+...+ ..+.....++. +..-.++++++--++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 777777777777777788888888888888888888888877 44444444433 44566788999999999
Q ss_pred HHHHHHHhhCCCCchhHHh----hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh----hHHHHHhCCChHHHHHhc
Q 044999 318 AADVLWDLAGYKHSVPVIR----NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA----DRVALADAGAVPIMIELL 389 (461)
Q Consensus 318 a~~~L~~l~~~~~~~~~l~----~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~ll 389 (461)
+...++.+-.+..|...+. +..-+..++.+|++++..+|-.|-....-...+|. .+..+.+.. +.|++++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l 309 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELL 309 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHH
Confidence 9999999987766654444 44678899999999999999999888777766443 333333433 4455544
No 200
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.28 E-value=1.5 Score=41.35 Aligned_cols=166 Identities=14% Similarity=0.027 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc
Q 044999 154 GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH 231 (461)
Q Consensus 154 ~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~ 231 (461)
+-+..|+.-|..+. .+....+.=.-..++..+++.|.+ .++..+..|++.|..++.+.+.+-.=...-++..+++.-.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 45566666454444 554443332223356778888987 5888999999999999887765322111235666777767
Q ss_pred cCCHHHHHHHHH-HHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHH--H----HHHHH
Q 044999 232 IGDWTTKLVAGN-TLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANA--I----AEHLV 304 (461)
Q Consensus 232 ~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--i----~~~l~ 304 (461)
+.++++...|.. ++.-++.+.+.+. +..+..++...+...-..++..+..+...-..... + .|.++
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 666666555554 4555666533222 34455555556666666666677766443322221 1 18888
Q ss_pred HHhccCCHHHHHHHHHHHHHhh
Q 044999 305 RILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 305 ~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
+-..+.+..+|..|+.+|..+.
T Consensus 455 qay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHH
Confidence 8888999999999999999886
No 201
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.14 E-value=0.12 Score=43.20 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHH
Q 044999 196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYA 268 (461)
Q Consensus 196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~ 268 (461)
-...++..|..++++++.+..+.+..+--.+...+. +..+..+..++++++.+..+ ++....+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 345777888888999988988888766544555554 23456788899999999887 45566777789999999
Q ss_pred HHhCCCChhHHHHHHHHHHHhccCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999 269 ELLQGPDSTGKEISEDVFCILAVSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPV 334 (461)
Q Consensus 269 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 334 (461)
.++..+++--+..++.++..+-.++..-..+. ....++.+.+.......++++-..|+..+..+..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 99998877777777777777776666533322 2333344556677777888888888777666554
Q ss_pred Hh
Q 044999 335 IR 336 (461)
Q Consensus 335 l~ 336 (461)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 43
No 202
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.84 E-value=0.15 Score=34.82 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 044999 315 NAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-ENDEVREKVSGAIAQLSYNEADRVALADAG 380 (461)
Q Consensus 315 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 380 (461)
.+.|++++++++..+.....+.+.++++.++++... +...+|-.+..+|+-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 457899999999998888888888999999999874 567799999999999999888888877765
No 203
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.73 E-value=3.6 Score=39.04 Aligned_cols=144 Identities=14% Similarity=0.213 Sum_probs=99.0
Q ss_pred CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-----CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHH-HH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-----KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQA-AA 75 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-----~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~-a~ 75 (461)
|+.....+...+..+.+.+++.-|..|...+..+. +..+++.+.+ ..+-+-+++.++..|+.--+.+-+. +.
T Consensus 5 pep~r~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~i 84 (698)
T KOG2611|consen 5 PEPERSPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISI 84 (698)
T ss_pred cccccccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHH
Confidence 55556666677888888888888988888888888 3344555555 6777888888877776644555566 88
Q ss_pred HHHHHHHhcCCchh--HHHHHhcCCHHHHHhcCCCC-CHH------HHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH
Q 044999 76 YCLKQIASQADGAL--ATEIGQSGVINSVLRLFPQS-DDS------FRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID 146 (461)
Q Consensus 76 ~~L~~l~~~~~~~~--~~~~~~~~~l~~L~~ll~~~-~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ 146 (461)
..|..+|. .++. ...+. +-||.|...++.+ +++ +...+-.|+...+ ..+.....+...|+++.+.+
T Consensus 85 tvLacFC~--~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q 159 (698)
T KOG2611|consen 85 TVLACFCR--VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQ 159 (698)
T ss_pred HHHHHHhC--ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHH
Confidence 88899998 4442 22332 3577888777632 222 3444555666666 44688899999999999998
Q ss_pred HhcCCC
Q 044999 147 LLNSCN 152 (461)
Q Consensus 147 ll~~~~ 152 (461)
+-.-.+
T Consensus 160 ~y~~~~ 165 (698)
T KOG2611|consen 160 MYELPD 165 (698)
T ss_pred HHhCCC
Confidence 765443
No 204
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.62 E-value=8.5 Score=42.08 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=96.5
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVL 176 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~ 176 (461)
.+..++..+..+...+|..|.+|+..+...++... .....-..+..-+.++...||+.|+..++... .+++...+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 46777788887788888889999988887664432 11111222333344556688999999888776 556555544
Q ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
.+ .+.+-+.++...||..+++.++.++...++-..+.+ ....++.-..++...++..+..++.++...
T Consensus 894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 33 344555567789999999999999888777443332 233344444455556899999999999876
No 205
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.60 E-value=0.69 Score=45.73 Aligned_cols=187 Identities=16% Similarity=0.104 Sum_probs=126.4
Q ss_pred HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHH
Q 044999 94 GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR 173 (461)
Q Consensus 94 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 173 (461)
++.++++.|+++++..|..+|.....-+-.+... ....+.+..+++.+..-+.+.++.+|+.++.++..++..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 5677899999999999999888777776666642 2456677778999999999999999999999998887221111
Q ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc
Q 044999 174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE 253 (461)
Q Consensus 174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 253 (461)
......+..+-+.-.+.+..+|....-+++.++..-.... .+.-.+..+..-++++-...+..+..+++......+
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~ 479 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD 479 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence 2222234445554445567889998889988877643311 112234455556677767777777777766555422
Q ss_pred chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
.. =+...++|.+..+..+++..++..+-.++...
T Consensus 480 ~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 480 QS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hh--hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 22 13345578888888888888887776665543
No 206
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.52 E-value=0.59 Score=39.32 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-----ChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHH
Q 044999 114 RTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-----NDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLV 186 (461)
Q Consensus 114 ~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~ 186 (461)
+...+..+.....+.++.+..+.+..+.-.+..+|... .+.+|..++.+++.+.. +......+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 33344444444446779999999888766666666432 24788999999999993 345566777889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--------cCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999 187 EAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--------LGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAHVEYITP 257 (461)
Q Consensus 187 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 257 (461)
++...+++--+.-|+.++..+..++..-+.+.+ ...+..++..+ ..+......++.++-..++..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999988888888888888777665333332 12233333322 345667788888888888887777665
Q ss_pred hh
Q 044999 258 VA 259 (461)
Q Consensus 258 ~~ 259 (461)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 54
No 207
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.47 E-value=1.2 Score=42.70 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=110.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh----HHHHHHHHHHHHhhCChHHHH
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND----GTRRYLLEILSALALLREVRR 174 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~~~~~~~ 174 (461)
...+.+.+.+++...+..+...+..++. +......+....++..|..+..+.+. ++....+.++..+-.+.-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3556777788888778888888888874 55677888888899999999987754 555566666666554333444
Q ss_pred HHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 175 VLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 175 ~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
..+...++..+..+.... +..+-..|+..|.++....+. +..+.+.--++.|+..++..+..++..|...+-.+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 444445565565555333 556788999999999988886 77888888899999999998888888877666655544
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.44 E-value=2.2 Score=42.60 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=96.1
Q ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCch
Q 044999 134 IVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEA-VSFGSMVSRERACQAIGLLAVTGR 212 (461)
Q Consensus 134 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~-l~~~~~~~~~~a~~~L~~l~~~~~ 212 (461)
..+...+++.|..-+++.+..+++.++..+..+++.-+ -.++..-++|.+-.+ +.+.+..++..++.++..+...-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l- 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL- 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-
Confidence 33455578888888899999999999999998884333 234444567776555 34557799999999999998211
Q ss_pred hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC
Q 044999 213 ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD 275 (461)
Q Consensus 213 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~ 275 (461)
++..+.+ .+..+....+..++.+......+..++......+..+..+.++|.++.+...+.
T Consensus 461 D~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 1222222 466666777788899988888888888776555455556677888888776554
No 209
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.3 Score=50.98 Aligned_cols=138 Identities=23% Similarity=0.239 Sum_probs=104.7
Q ss_pred ChHHHHHhcc----cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCccc
Q 044999 222 VIPGLVELFH----IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 222 ~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
+.|.+++.++ .++|+++..|.-+|+.+..- .+.+..- +|.|+..+. +++|-+|.++..+++.|+..-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4556666664 45789999999999887654 3444333 788999986 77999999999999999765554
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 296 -ANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 296 -~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
-+...+.+...|++.++.+|..|+..|.+|-.++ .+.--|-+..+..++.+++++++.-|-....-|+.
T Consensus 995 lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 3344499999999999999999999999997542 23344778888999999999888877744444443
No 210
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=7.4 Score=40.46 Aligned_cols=365 Identities=12% Similarity=0.093 Sum_probs=186.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH
Q 044999 14 RFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT 91 (461)
Q Consensus 14 ~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 91 (461)
.++..+.|.---+|.+|+..++..+ +-.....+.+++....+.|.. +.+..++..|+.+|..+.+. .+....
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~-----d~~lPV~VeAalALq~fI~~-~~~~~e 539 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN-----DNELPVRVEAALALQSFISN-QEQADE 539 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc-----CCcCchhhHHHHHHHHHHhc-chhhhh
Confidence 3455566777788999999999999 444444556688888888873 23456888899999999984 444434
Q ss_pred HHHhc--CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC---CC---hHHHHHHHHH
Q 044999 92 EIGQS--GVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS---CN---DGTRRYLLEI 162 (461)
Q Consensus 92 ~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~---~~~~~~a~~~ 162 (461)
.+..+ +.++.|.++.+.-+.+........+. ..+..-......+. ......+.+++.. .+ .+-...|..+
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 44332 44566666666544443333332222 33321111111121 1234456666653 11 2333444444
Q ss_pred HHHhh---CChHHHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH
Q 044999 163 LSALA---LLREVRRVLI---CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW 235 (461)
Q Consensus 163 L~~l~---~~~~~~~~~~---~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~ 235 (461)
|..+. ..-+....+. +.-+++.+-..|++.-.+.-+.++..+.+++...+. ...|= |.++.+.+.+++...
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~ 696 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI 696 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence 44433 2222222222 223566666667777667778888888777654432 22221 246677777777666
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcC-----CHHHHHHHhCCC--ChhHHHHHHHHHHHhccCccc-HH----HHHHHH
Q 044999 236 TTKLVAGNTLGVVAAHVEYITPVAEAG-----AIPLYAELLQGP--DSTGKEISEDVFCILAVSEAN-AN----AIAEHL 303 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-----~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~-~~----~i~~~l 303 (461)
+.-....-+|.|...... ..+.+.+ +...+..++.+. ...-.+.|+..+..+..+-.+ -. .+++..
T Consensus 697 dyf~d~~~~l~N~vt~g~--~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a 774 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGT--PSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELA 774 (1010)
T ss_pred HHHHHHHHHHhhheeeCc--hhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHH
Confidence 666677777887655311 1222221 223334445443 223344566666665332222 11 122333
Q ss_pred HHHhcc--CCHHHHHHHHHHHHHhh-CCCCc-hhHHhhcCCHHHHH----Hhh----cCCCHHHHHHHHHHHHHhcCChh
Q 044999 304 VRILRE--GDNEANAAAADVLWDLA-GYKHS-VPVIRNSGAIPILV----NLL----RGENDEVREKVSGAIAQLSYNEA 371 (461)
Q Consensus 304 ~~ll~~--~~~~~~~~a~~~L~~l~-~~~~~-~~~l~~~g~i~~L~----~ll----~~~~~~v~~~a~~~L~~l~~~~~ 371 (461)
+.-+.. .+...+..++....+.- .+|.. ...+-+.|.....- +.. +..+..+..-++.+|..+-..+.
T Consensus 775 ~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~ 854 (1010)
T KOG1991|consen 775 LSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQ 854 (1010)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCC
Confidence 333333 45667777776555444 45543 33344445433322 222 21222333333344444422222
Q ss_pred hHHHHHhCCChHHHHHhcc
Q 044999 372 DRVALADAGAVPIMIELLH 390 (461)
Q Consensus 372 ~~~~~~~~~~i~~L~~ll~ 390 (461)
......- +..+.++.++.
T Consensus 855 ~~~e~l~-~l~~~lv~L~~ 872 (1010)
T KOG1991|consen 855 LPSEVLG-QLGPALVELLL 872 (1010)
T ss_pred chHHHHH-HHHHHHHHHHH
Confidence 2222222 56777777764
No 211
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=4.3 Score=39.45 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=93.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999 102 VLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLLEILSALALLREVRRVLICL 179 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 179 (461)
+-+++.+.++..+-..+..+. ..+... ..|++..++.. .++.+.++|+.|+.+|.-+|..+ .
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~ 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------R 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecC--------c
Confidence 445555666655544444443 222111 23455666665 56778899999999998887322 2
Q ss_pred CCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchh
Q 044999 180 GGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYIT 256 (461)
Q Consensus 180 ~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~ 256 (461)
..++..+++|. +.+..+|...+-+|+-.+.....+. ++..|-.++.+.+.-+|..|+-+++.+... ++.-.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 23555666665 4588999999999998877665532 345666677788888898888888776543 22211
Q ss_pred hhhhcCCHHHHHHHhCCCCh
Q 044999 257 PVAEAGAIPLYAELLQGPDS 276 (461)
Q Consensus 257 ~~~~~g~i~~L~~ll~~~~~ 276 (461)
.+ .+++..+.+++.+.+.
T Consensus 659 ~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 659 NV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred hH--HHHHHHHHHHHhhhhH
Confidence 11 2445666666665543
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.32 E-value=7.3 Score=40.10 Aligned_cols=187 Identities=18% Similarity=0.128 Sum_probs=111.6
Q ss_pred HHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChH--HHHHhcccCCH-H
Q 044999 162 ILSALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIP--GLVELFHIGDW-T 236 (461)
Q Consensus 162 ~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~--~L~~ll~~~~~-~ 236 (461)
++++.. .++++.+.+++.+++..+...++.- ..+++..+++.+.+++...+.+..+.....+. .+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 888888 8899999999999999999999855 66899999999999988776543332221222 33333433333 6
Q ss_pred HHHHHHHHHHHHhcCccc-hhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhccCcccHHHHHHHHHHHhc-cCCHH
Q 044999 237 TKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSEANANAIAEHLVRILR-EGDNE 313 (461)
Q Consensus 237 ~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~-~~~~~ 313 (461)
.-..++..|..+..+.+. -.......+-..+.+....-. ...+. .+...+.+.+.+++. +..+.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~-------------~~~~~f~~~~~~il~~s~~~g 640 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRV-------------INDRSFFPRILRILRLSKSDG 640 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceee-------------hhhhhcchhHHHHhcccCCCc
Confidence 667777788777765222 111111111112222221110 00000 000001122555554 44678
Q ss_pred HHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHH
Q 044999 314 ANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSG 361 (461)
Q Consensus 314 ~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~ 361 (461)
.+..|++++.++. .++++...+.+.|+++.+...-... ...++..+..
T Consensus 641 ~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (699)
T KOG3665|consen 641 SQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVL 690 (699)
T ss_pred hHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHH
Confidence 8889999999999 4577888888889988888765432 3334444433
No 213
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.16 E-value=5.2 Score=37.78 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=107.8
Q ss_pred HHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--------------------------C----hHHHHHHHHHHH--
Q 044999 117 LVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--------------------------N----DGTRRYLLEILS-- 164 (461)
Q Consensus 117 ~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--------------------------~----~~~~~~a~~~L~-- 164 (461)
++..+-.+....+..-..+.+.+|+..+++.++.. + +.-|...++.|.
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 34444455545555567777888888887655210 0 012333343333
Q ss_pred --HhhC-Ch---HHHHHHHh-cCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-c
Q 044999 165 --ALAL-LR---EVRRVLIC-LGGLRYLVEAVSFG---SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-I 232 (461)
Q Consensus 165 --~l~~-~~---~~~~~~~~-~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~ 232 (461)
.+.. .. +.-+.+++ ......|..++++. .+.+-..|+..+..+..+.+. -..+.+.|.++.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 3333 22 22333455 44566666677665 457888999999999999888 778889999999999887 3
Q ss_pred ---CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC
Q 044999 233 ---GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 233 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
++.++....-.++..+|-+....+.+.+.+.++.+++++.++
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 356777777788899999999999999999999999988765
No 214
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.11 E-value=8.1 Score=39.80 Aligned_cols=190 Identities=12% Similarity=0.063 Sum_probs=115.6
Q ss_pred HHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHH--HHHHHhCCC-Chh
Q 044999 203 AIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIP--LYAELLQGP-DST 277 (461)
Q Consensus 203 ~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~--~L~~ll~~~-~~~ 277 (461)
++++.+...+. ++.+.+.|+...+...++ -...+.+..+.+.+.+++...+.+........+. .+..++... +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 88899888887 999999999999999998 4567788899999999998754443333222222 333344433 448
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHH-HHHhhc-CCCHHH
Q 044999 278 GKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPI-LVNLLR-GENDEV 355 (461)
Q Consensus 278 ~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~-L~~ll~-~~~~~v 355 (461)
.-..++..|+.+..+.+..... ..-+.+.+.-..++..+. .............. +..++. +..+..
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~---------~~r~~~~~~l~e~i~~~~---~~~~~~~~~~~f~~~~~~il~~s~~~g~ 641 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTEC---------VFRNSVNELLVEAISRWL---TSEIRVINDRSFFPRILRILRLSKSDGS 641 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccc---------cchHHHHHHHHHHhhccC---ccceeehhhhhcchhHHHHhcccCCCch
Confidence 8888888888885543220000 000111222222222222 22111122222222 444444 456778
Q ss_pred HHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHH
Q 044999 356 REKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESL 404 (461)
Q Consensus 356 ~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L 404 (461)
+..|++++.++.. ++++...+.+.|+++.+...-.. ....++..+...+
T Consensus 642 ~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 642 QLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 9999999999999 88888888899988888776522 2444444444433
No 215
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.10 E-value=1.5 Score=43.46 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=118.7
Q ss_pred HhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH
Q 044999 218 VELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA 296 (461)
Q Consensus 218 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 296 (461)
.+.++++.++++++..+..+|.. .|.++-.. +......++..++|.+..-+.+.++-+|+..+.++..++..-..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 44568999999999999988877 45555444 455566778888999999999999999999999988876433322
Q ss_pred HHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh
Q 044999 297 NAIA----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD 372 (461)
Q Consensus 297 ~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 372 (461)
.+. ..+.++-.+.++.+|....-+|+.++.+-.... .+.-.+-.+.+-+.++-...|..+..+++........
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence 222 333333334456777777777777765421111 2222233455556666566778888877777763222
Q ss_pred HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 044999 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINF 407 (461)
Q Consensus 373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 407 (461)
.. +...++|.+.-+..+.+..++..+-.++...
T Consensus 481 ~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 481 SE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hh--hhhhccccccccccCcccchhhHHHHHHHHH
Confidence 22 2334577777777777777777777666544
No 216
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=9.1 Score=39.85 Aligned_cols=357 Identities=13% Similarity=0.075 Sum_probs=190.5
Q ss_pred HHHhHHHHHHHhh------c--CCHHHHHHHHHHHHhhc-----CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHH
Q 044999 8 WEEAFNRFEQAVV------S--GSEALQVKALTKLARVS-----KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQA 73 (461)
Q Consensus 8 ~~~~~~~l~~ll~------~--~~~~~~~~a~~~l~~la-----~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~ 73 (461)
..+.++.+.+.+. . .++..+.-|.+.++.++ ++..+.++.. .++.+.=.+++ ..- -.+..
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s----~~g--~Lrar 481 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS----PYG--YLRAR 481 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC----chh--HHHHH
Confidence 4445556666666 2 34677788888898888 3444566666 44545444554 111 13444
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHc--CCHHHHHHHhcC
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARN--GGLEIVIDLLNS 150 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~ 150 (461)
|++.+..+++. +...... -...++...+.|. +.+--|+..++.++..+....+.....+... +.++.|+.+.+.
T Consensus 482 ac~vl~~~~~~-df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 482 ACWVLSQFSSI-DFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHHHHHhc-cCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 99999999953 2111111 1123455556666 6666789999999998887665554444332 334455555555
Q ss_pred CChHHHHHHHH-HHHHhh-CChHHHHHHHhcCCHHHHHHHHcC---C---CHHHHHHHHHHHHHhhc---Cchh-HHHHH
Q 044999 151 CNDGTRRYLLE-ILSALA-LLREVRRVLICLGGLRYLVEAVSF---G---SMVSRERACQAIGLLAV---TGRA-RRLLV 218 (461)
Q Consensus 151 ~~~~~~~~a~~-~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~---~---~~~~~~~a~~~L~~l~~---~~~~-~~~~~ 218 (461)
.+.+.....+. .+...+ .-.+....+.. .....+.+++.. . +.+-...|.++|..+.. +-++ ...+.
T Consensus 559 ~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~ 637 (1010)
T KOG1991|consen 559 VENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK 637 (1010)
T ss_pred cchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 54444444443 233333 22222222222 244556666653 1 22334455555544432 2222 11222
Q ss_pred --hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999 219 --ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 219 --~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
+..+++.+-.++++.-.++-+.++..+.++... ++....+ -|..+.+.+.++....+.-....-+|.|.......
T Consensus 638 ~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 638 QLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch
Confidence 233455555566677777777777777777654 3333333 25567777777777777777888888888433221
Q ss_pred --------HHHHHHHHHHHhccC--CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHh----hcC--CCHHHHHH
Q 044999 296 --------ANAIAEHLVRILREG--DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNL----LRG--ENDEVREK 358 (461)
Q Consensus 296 --------~~~i~~~l~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~l----l~~--~~~~v~~~ 358 (461)
...+...+-.++.+. ...-.+.|++.+-.+.-+ ....+. .+|.++++ +.. .+...+..
T Consensus 716 ~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~ 790 (1010)
T KOG1991|consen 716 SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRVM 790 (1010)
T ss_pred hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHHH
Confidence 122225555666553 345566677777776532 111111 24444443 333 44556666
Q ss_pred HHHHHH-HhcCChhhHHHHH-hCCC
Q 044999 359 VSGAIA-QLSYNEADRVALA-DAGA 381 (461)
Q Consensus 359 a~~~L~-~l~~~~~~~~~~~-~~~~ 381 (461)
++.+.. ++-.+|...-.+. +.|.
T Consensus 791 ~leVvinalyynP~ltL~iLe~~~~ 815 (1010)
T KOG1991|consen 791 LLEVVINALYYNPKLTLGILENQGF 815 (1010)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHcCC
Confidence 665544 4444665544444 4444
No 217
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=2.8 Score=41.72 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=76.2
Q ss_pred CChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHH
Q 044999 221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAI 299 (461)
Q Consensus 221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i 299 (461)
|.+..++.-..+.+..+|..++..|..+.........-+-.+....+..-+.+..|.||..|..+|+.+-..+.. .-.+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v 164 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPV 164 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccH
Confidence 356666666678889999999999999988644444445556677888888889999999999999999754443 3344
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHH
Q 044999 300 AEHLVRILRE-GDNEANAAAADVL 322 (461)
Q Consensus 300 ~~~l~~ll~~-~~~~~~~~a~~~L 322 (461)
...+..+++. ++++||..|+..|
T Consensus 165 ~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 165 VNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhh
Confidence 4777788854 5899999876443
No 218
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.84 E-value=3.9 Score=40.70 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=134.5
Q ss_pred CHHHHHhcCCC----CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCC-hH
Q 044999 98 VINSVLRLFPQ----SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALL-RE 171 (461)
Q Consensus 98 ~l~~L~~ll~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~ 171 (461)
+-|...+.+++ +|+..+..|..++..+.+-+.+.+. .-+|.++..++ +++|.+|..|+-.++.+... ..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34444555554 6888888888888855543322211 23778888776 88999999999999887732 22
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
.... .-..|.+-|.+.+..+|+.++.++..|......+ -.|-.+.+...+.+++.++...|-..+..++..
T Consensus 968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 2222 2345667777889999999999999986544331 246678889999999999999888888888765
Q ss_pred ccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHhccCcccHHHHHHH-HHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999 252 VEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCILAVSEANANAIAEH-LVRILREGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 252 ~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~~-l~~ll~~~~~~~~~~a~~~L~~l~~~ 328 (461)
+.. +-.|++..+-.+-.+. ..+--+...+.|..+.......+++.+. ..++++.....--...+..+.||-..
T Consensus 1039 dNt----~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~~rl~rc~tq~qwd~~~~~l~nLp~k 1114 (1128)
T COG5098 1039 DNT----MYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLFLRLLRCNTQSQWDKLLCSLFNLPDK 1114 (1128)
T ss_pred ccc----hhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCcc
Confidence 221 1234444333332211 1111334455555555555455555533 33455555444444556666666544
Q ss_pred CCchhHHhh
Q 044999 329 KHSVPVIRN 337 (461)
Q Consensus 329 ~~~~~~l~~ 337 (461)
.++...+.+
T Consensus 1115 ~~~~~~Ll~ 1123 (1128)
T COG5098 1115 IAGSGGLLN 1123 (1128)
T ss_pred ccchhhHhh
Confidence 344433333
No 219
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=93.74 E-value=5.8 Score=36.89 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=155.0
Q ss_pred cHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc-CCCchhHH--HhhHHHHHHhhcc----CCCCCCCcHHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS-KFAPQDIL--AATIPILARLLGE----NNFSGNLTRSIQQAAAYCL 78 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la-~~~~~~~l--~~~i~~l~~~l~~----~~~~~~~~~~~~~~a~~~L 78 (461)
+|.+.-+.+++.+.++.+ ..+......+..|+ +...-.-+ .+.+++|+.+-.- ++.+...|-.+...+..+|
T Consensus 42 ~r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCL 121 (532)
T KOG4464|consen 42 DRKELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCL 121 (532)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHH
Confidence 488888999999998874 44555666666677 33222211 2245555544321 1223334445777799999
Q ss_pred HHHHhcCCchhHHHHHhcCCHHHHHhcCCC-----CCHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHHHHhcCC-
Q 044999 79 KQIASQADGALATEIGQSGVINSVLRLFPQ-----SDDSFRTVLVKCLRVFVTFGNENR-VIVARNGGLEIVIDLLNSC- 151 (461)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~- 151 (461)
+|+... +...+....+......+.+.+.. ...++...-.+.+.-+..-....| ..+.+.+|++.+.+.+++.
T Consensus 122 cNlvf~-Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~l 200 (532)
T KOG4464|consen 122 CNLVFH-SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKL 200 (532)
T ss_pred HHHHhc-cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccc
Confidence 999986 66788888887766666654321 112233344444443333233444 5567889999999988642
Q ss_pred --------C------hHHHHHHHHHHHHhhCCh--HHH-HHHHh----cCCHHHHHHHHcCC--CHHHHHHHHHHHHHh-
Q 044999 152 --------N------DGTRRYLLEILSALALLR--EVR-RVLIC----LGGLRYLVEAVSFG--SMVSRERACQAIGLL- 207 (461)
Q Consensus 152 --------~------~~~~~~a~~~L~~l~~~~--~~~-~~~~~----~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l- 207 (461)
. .+....++.++.|+..+. ... ..-.. .+....++..+... +.++...+..-+.|.
T Consensus 201 gidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~ 280 (532)
T KOG4464|consen 201 GIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVP 280 (532)
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCch
Confidence 1 144566777778877322 111 11011 11122222222211 223333322222221
Q ss_pred -------hcCc--hh-HHHHHh--cCChHHHHHhccc---------CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHH
Q 044999 208 -------AVTG--RA-RRLLVE--LGVIPGLVELFHI---------GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPL 266 (461)
Q Consensus 208 -------~~~~--~~-~~~~~~--~~~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~ 266 (461)
+... ++ .+.+.. -.....+..+|.. ...+...-.+.+|..++.....-..+.+..++|.
T Consensus 281 ~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPP 360 (532)
T KOG4464|consen 281 EKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPP 360 (532)
T ss_pred hhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCc
Confidence 1111 11 111111 1112222223321 1122333445555555555444444555556666
Q ss_pred HHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999 267 YAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 267 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~ 328 (461)
|.+.-+. |+.-..+...+++++...+..++..|+..|..||..
T Consensus 361 LrDV~~R-------------------PEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKe 403 (532)
T KOG4464|consen 361 LRDVSQR-------------------PEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKE 403 (532)
T ss_pred hhhhhcC-------------------cchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhc
Confidence 6644332 222223335777778778888888999999999763
No 220
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=93.68 E-value=5.9 Score=36.75 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=113.9
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcC--C-Cc-hhHHHh---hHHHHHHhhccCCCCCCCc-------HHHHHHH
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVSK--F-AP-QDILAA---TIPILARLLGENNFSGNLT-------RSIQQAA 74 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~--~-~~-~~~l~~---~i~~l~~~l~~~~~~~~~~-------~~~~~~a 74 (461)
.+.++.+...+++........+.+.+..+.. . .. ++.+.. ..+.+-+++...-...+++ ++++...
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 3447788888888888888889999988882 2 22 333333 5556666654311001110 1567778
Q ss_pred HHHHHHHHhcCCchhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccC---hhhHHHHHHcCCHHHHHHHhc
Q 044999 75 AYCLKQIASQADGALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFG---NENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 75 ~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~---~~~~~~~~~~g~i~~L~~ll~ 149 (461)
+..+..+...++...+..+. ..+.+..+.+.|..+++++.......+. ++..+. ...+..+.....+..|..+..
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 88888888776776666665 4567888999999988888888888888 344332 344566667778888999888
Q ss_pred CCCh----HHHHHHHHHHHHhhCChHH
Q 044999 150 SCND----GTRRYLLEILSALALLREV 172 (461)
Q Consensus 150 ~~~~----~~~~~a~~~L~~l~~~~~~ 172 (461)
..++ .++..+-..|..+|.++..
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 8777 8999999999999866544
No 221
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.64 E-value=1.3 Score=37.24 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=74.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC---------CChHHHHHHHHHHHHhhC
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS---------CNDGTRRYLLEILSALAL 168 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------~~~~~~~~a~~~L~~l~~ 168 (461)
...+++.+++..... .....+. .|-..+..--..|.+.||+..|+++|.. .+......++.++..+..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 445566665554432 2233333 3333333445677788999999998743 234778889999999998
Q ss_pred ChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 169 LREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 169 ~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
+......++. .+++..++..+.+++..++..++.+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8887777776 679999999999999999999999998875
No 222
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=93.60 E-value=6.2 Score=36.72 Aligned_cols=270 Identities=16% Similarity=0.157 Sum_probs=144.5
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------CCCHHHHHHHHHHHHHhhcCc
Q 044999 143 IVIDLLNSCND-GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS----------FGSMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 143 ~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~----------~~~~~~~~~a~~~L~~l~~~~ 211 (461)
.+++.+.++.+ ..+...+.++.-++.+...-.-+....-++.++.+-. ..+.++...++.||+|+..+.
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 46777777664 5556677777777765554444433333444444432 114578899999999999998
Q ss_pred hh-HHHHHhcCChHHHHHhcccC-----CHHHHHHHHHHHHHHhcC-ccchhhh-hhcCCHHHHHHHhCCC---Ch----
Q 044999 212 RA-RRLLVELGVIPGLVELFHIG-----DWTTKLVAGNTLGVVAAH-VEYITPV-AEAGAIPLYAELLQGP---DS---- 276 (461)
Q Consensus 212 ~~-~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~-~~~~~~~-~~~g~i~~L~~ll~~~---~~---- 276 (461)
+. +..+.+......+.+.+... ..++...=++.|.-++.. .+.|.++ .+.++++.+.+++.+. ++
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87 77777776666666655421 112233333444444443 4555444 4558899999988653 22
Q ss_pred -----hH---HHHHHHHHHHhccCccc--H--HHHH--------HHHHHHhccC--CHHHHHHHHHHHHH--------hh
Q 044999 277 -----TG---KEISEDVFCILAVSEAN--A--NAIA--------EHLVRILREG--DNEANAAAADVLWD--------LA 326 (461)
Q Consensus 277 -----~~---~~~a~~~L~~l~~~~~~--~--~~i~--------~~l~~ll~~~--~~~~~~~a~~~L~~--------l~ 326 (461)
+- .-.++.++.|+..+... . ..+. ..++-.+... ..++-..+...|.| ++
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~~ 288 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVLA 288 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhccc
Confidence 22 22345566676543321 1 0111 2222222111 22222222222221 12
Q ss_pred CC--CCchhH-H--hhcCCHHHHHHhhcCCC---------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc---
Q 044999 327 GY--KHSVPV-I--RNSGAIPILVNLLRGEN---------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL--- 389 (461)
Q Consensus 327 ~~--~~~~~~-l--~~~g~i~~L~~ll~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll--- 389 (461)
.. .++... + ..-.-+..+..+|.... .+.......+|..++++..+-..+.+..++|+|.+.-
T Consensus 289 ~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPPLrDV~~RP 368 (532)
T KOG4464|consen 289 GAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPPLRDVSQRP 368 (532)
T ss_pred CCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCchhhhhcCc
Confidence 11 122111 1 22223555666654321 2244456778888888666666666666888776543
Q ss_pred --------------cCCCHHHHHHHHHHHHHhcCCCc
Q 044999 390 --------------HDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 390 --------------~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
...+..++.-|+..|.-|+..+-
T Consensus 369 Evg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV 405 (532)
T KOG4464|consen 369 EVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESV 405 (532)
T ss_pred chhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcch
Confidence 33456677777888887776653
No 223
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.37 E-value=1.4 Score=37.03 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=63.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHcC---------CCHHHHHHHHHHHHHhhcCchhHHH-HHhcCChHHHHHhcccCCHHHHH
Q 044999 170 REVRRVLICLGGLRYLVEAVSF---------GSMVSRERACQAIGLLAVTGRARRL-LVELGVIPGLVELFHIGDWTTKL 239 (461)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~~l~~---------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~ 239 (461)
......|++.||+..|+.+|.. .+......+++|+..+..+...... +...+++..+...+.+++..++.
T Consensus 97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~ 176 (187)
T PF06371_consen 97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK 176 (187)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence 3456788888999999988853 2457888999999999998887444 44588999999999999999999
Q ss_pred HHHHHHHHHh
Q 044999 240 VAGNTLGVVA 249 (461)
Q Consensus 240 ~a~~~L~~l~ 249 (461)
.++..|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 224
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.07 E-value=4 Score=42.31 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=120.8
Q ss_pred ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccC--cccHHH
Q 044999 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVS--EANANA 298 (461)
Q Consensus 222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~--~~~~~~ 298 (461)
..+.+..-+.+.++.-+..|+..+......+.....-...|.+-.++.. +.+.+..+...++.+|..++.. ...+..
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 4455555666788888888888877776654311111112333334443 3455777888888888887532 222222
Q ss_pred HH---HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch-hhH
Q 044999 299 IA---EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE-ADR 373 (461)
Q Consensus 299 i~---~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~-~~~ 373 (461)
.. +.+++-+....+.++..+..++-.++.. .......+.+...+.+++|.++......+..... .. ...
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 22 8899999888888888777777766541 1123456778889999999999987766666665 22 333
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
..-.-.+.+|.++....+.+.++|..|..++..+...
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3333445788899999999999999999988766533
No 225
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.02 E-value=6.6 Score=40.79 Aligned_cols=180 Identities=12% Similarity=0.134 Sum_probs=121.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHH-HhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC--ccchhhhhh
Q 044999 185 LVEAVSFGSMVSRERACQAIGLLAVTGRARRLL-VELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH--VEYITPVAE 260 (461)
Q Consensus 185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~ 260 (461)
+-.-+.+.++.-|..|+..+........ .... ...|.+..++.... +.+..+...++.+|..++.. ...+. ..
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~ 334 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YA 334 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HH
Confidence 3334456678888899888887766665 1111 11223333333333 56777888888888888875 22222 22
Q ss_pred cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CC-CchhHHhhc
Q 044999 261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAG-YK-HSVPVIRNS 338 (461)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~ 338 (461)
.+..+.+++-+....+.++..+..++-.... ...-..+.+.+...+++++|..+..+...+..... .+ .....-.-.
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 3567889999988888888877777665544 12223344889999999999999987777766653 22 333333345
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+.++.++....+.+.+||..+..++..+..
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 678889999999999999999988887776
No 226
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=18 Score=39.75 Aligned_cols=147 Identities=15% Similarity=0.044 Sum_probs=87.2
Q ss_pred cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHH
Q 044999 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANA 298 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~ 298 (461)
.+++|.|..-|.+++...|..|...++.+...+...-.=-........+.-+.+.+.++|..++....+. ..+++....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 4688999999999999999999999999887644433200113345566667777889998888877665 334443333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 299 IAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
....+.--.++.++.++.....++.... .......+... .+..+.+.+.+....||..|..-|..+..
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~-v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACD-VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEee-hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3222222223444444432221111111 11111122222 55566677778889999999887776654
No 227
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.27 E-value=5.1 Score=39.97 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=126.3
Q ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-ccc
Q 044999 182 LRYLVEAVSF----GSMVSRERACQAIGLLAV-TGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VEY 254 (461)
Q Consensus 182 l~~l~~~l~~----~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~~ 254 (461)
-|.+.+...+ .++.++..|.-+|..+.- +.+.+ ..-+|.++..+. +++|.+|..|+-.++-+... ...
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444444444 477888888777776532 22221 124788888887 78888888887777766543 111
Q ss_pred hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999 255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 255 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
.... -..|..-+.+.+..+++.|..++.+|..... .+-++ +.+..+|.+.+.++...|-..+..++..+..
T Consensus 969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGql-g~ma~~L~deda~Isdmar~fft~~a~KdNt- 1041 (1128)
T COG5098 969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQL-GKMALLLTDEDAEISDMARHFFTQIAKKDNT- 1041 (1128)
T ss_pred hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccch-hhhHhhccCCcchHHHHHHHHHHHHHhcccc-
Confidence 1111 3456677778888999999988888743222 12111 6677778888888888888888888754222
Q ss_pred hHHhhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 333 PVIRNSGAIPILVNLLRG---ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
+-.|++...-.+-++ +... -+...+.|..+...+.+++++.+ ....++.+.....-....+.++.||-.
T Consensus 1042 ---~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E----~L~~rl~rc~tq~qwd~~~~~l~nLp~ 1113 (1128)
T COG5098 1042 ---MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE----SLFLRLLRCNTQSQWDKLLCSLFNLPD 1113 (1128)
T ss_pred ---hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHhcCCc
Confidence 233444444433321 1111 22344455555554555555544 334445555555555556667777766
Q ss_pred CCcchHHHHH
Q 044999 410 DPLQHERISE 419 (461)
Q Consensus 410 ~~~~~~~l~~ 419 (461)
..++...+.+
T Consensus 1114 k~~~~~~Ll~ 1123 (1128)
T COG5098 1114 KIAGSGGLLN 1123 (1128)
T ss_pred cccchhhHhh
Confidence 5555544443
No 228
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.10 E-value=12 Score=37.78 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=80.1
Q ss_pred HHHHHHHhCCC----ChhHHHHHHHHHHHhc----cCcccH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHhh
Q 044999 264 IPLYAELLQGP----DSTGKEISEDVFCILA----VSEANA-----NAIAEHLVRIL----REGDNEANAAAADVLWDLA 326 (461)
Q Consensus 264 i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~~~~~-----~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~ 326 (461)
+..+..+++++ ++.++..+..+++++. ...+.+ ..+.+.+.+.| ...+.+.+..++.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 67788888754 4567777777777663 222211 23335555444 3456666788889999885
Q ss_pred CCCCchhHHhhcCCHHHHHHhhc---CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc--CCCHHHHHHH
Q 044999 327 GYKHSVPVIRNSGAIPILVNLLR---GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH--DESEELRDNA 400 (461)
Q Consensus 327 ~~~~~~~~l~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a 400 (461)
. ...++.+..++. ..+..+|..|+++|.+++. .+.. +-+.+..++. ..++++|..|
T Consensus 475 ~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 H----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred C----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHH
Confidence 3 234555666655 2346799999999999986 4431 2345566553 4688999888
Q ss_pred HHHHHHh
Q 044999 401 AESLINF 407 (461)
Q Consensus 401 ~~~L~~l 407 (461)
..+|...
T Consensus 537 ~~~lm~t 543 (574)
T smart00638 537 VLVLMET 543 (574)
T ss_pred HHHHHhc
Confidence 8777544
No 229
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.81 E-value=9 Score=34.11 Aligned_cols=212 Identities=14% Similarity=0.081 Sum_probs=120.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh-HHHHHh
Q 044999 144 VIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA-RRLLVE 219 (461)
Q Consensus 144 L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~ 219 (461)
|-..|.+.++.+|..|+..|..+.. -+... ....-+..+++++.+. |......++..+..|...... ....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 4556788899999999999988772 22211 2222255666666543 445555557777666644332 2111
Q ss_pred cCChHHHHHhcc--cCCHHHHHHHHHHHHHHhcCccchhhhh--hcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc
Q 044999 220 LGVIPGLVELFH--IGDWTTKLVAGNTLGVVAAHVEYITPVA--EAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA 294 (461)
Q Consensus 220 ~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~ 294 (461)
...+..+.+-.. +-....|..+...+..+..+ .+..+. ..+++..+++.+..+ ||.-...+...+..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 113333333222 33456777888888887765 222222 235678888888766 78776666666666543333
Q ss_pred cHHHHHHHHHHHhcc----------CCH--HHHHHHHHHHH-HhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHH
Q 044999 295 NANAIAEHLVRILRE----------GDN--EANAAAADVLW-DLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSG 361 (461)
Q Consensus 295 ~~~~i~~~l~~ll~~----------~~~--~~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~ 361 (461)
. ....+.+.+.+.. ++| -.++.-...|. .++..+.. ..-.+|.|++=|.+..+.++..++.
T Consensus 157 ~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 157 I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2 2222333332211 122 12222223333 33333332 2346788999999999999999999
Q ss_pred HHHHhcC
Q 044999 362 AIAQLSY 368 (461)
Q Consensus 362 ~L~~l~~ 368 (461)
+|..++.
T Consensus 231 tL~~c~~ 237 (262)
T PF14500_consen 231 TLKACIE 237 (262)
T ss_pred HHHHHHH
Confidence 9988776
No 230
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.76 E-value=0.44 Score=40.74 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcC-------CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-H-HHHHhcCCh
Q 044999 154 GTRRYLLEILSALALLREVRRVLICLG-------GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-R-RLLVELGVI 223 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~-~~~~~~~~i 223 (461)
.-|..|+++|++++..+.+...+...+ .+..|++++... +.-.|+.|+-.|.+|+..+.. . ..-.+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 578999999999998777777776665 344556666544 778999999999999998887 3 444568899
Q ss_pred HHHHHhcccCCH
Q 044999 224 PGLVELFHIGDW 235 (461)
Q Consensus 224 ~~L~~ll~~~~~ 235 (461)
..|+..+.+...
T Consensus 219 ~~Li~FiE~a~~ 230 (257)
T PF12031_consen 219 SHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 231
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=18 Score=37.13 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC
Q 044999 72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC 151 (461)
Q Consensus 72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 151 (461)
..|...|..++. -......+...+++..+.+..--++-..+ +.-..+.+.+.++.+-+-++.+
T Consensus 311 s~Al~FLt~V~~--r~~y~~~F~~~~vl~~i~e~VvlpN~~lR---------------~eDeElFED~pleYiRRDlEGs 373 (960)
T KOG1992|consen 311 SKALQFLTSVSR--RPHYAELFEGENVLAQICEKVVLPNLILR---------------EEDEELFEDNPLEYIRRDLEGS 373 (960)
T ss_pred HHHHHHHHHHHh--hhhhHhhhcchHHHHHHHHhhcccccccc---------------hhhHHHhccCHHHHHHHhcccC
Confidence 347778888777 44444444444455544443333322211 1123444555666777777777
Q ss_pred ChHH-HHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH-cCC--CHHHHHHHHHHHHHhhcCchh-HHHHHhc----CC
Q 044999 152 NDGT-RRYLLEILSALALLREVRRVLICLGGLRYLVEAV-SFG--SMVSRERACQAIGLLAVTGRA-RRLLVEL----GV 222 (461)
Q Consensus 152 ~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~----~~ 222 (461)
|.+. |+.|+..+..++.+-+....-+-.+-+..++.-. .++ ++.-+..+...+..++..... +.-+... +.
T Consensus 374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv 453 (960)
T KOG1992|consen 374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV 453 (960)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence 7655 4667788888885444433222222344444432 233 555566777777777665443 2211111 11
Q ss_pred hHHHH-----Hhcc---cCCHHHHHHHHHHHHHHhcCccchhhhhh---cCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 223 IPGLV-----ELFH---IGDWTTKLVAGNTLGVVAAHVEYITPVAE---AGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 223 i~~L~-----~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
+..+. ++.+ .+.+-++.. ++..+. -.|..+.. ...+|.++..+..+...+...|+.++..+
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~---aIKy~~---~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki 525 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKAD---AIKYIY---TFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL 525 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhc---ccceee---eecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence 11111 1112 122222222 222211 12222222 24578899999999999999999988876
No 232
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.64 E-value=2.6 Score=42.09 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=96.8
Q ss_pred cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccCcccHHH
Q 044999 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVSEANANA 298 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 298 (461)
..+++.|..-+++.+..+|+.++..+..++..-+ ...++.-++|.+..+. +..+..++.+++.++..+...-+ +..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~ 464 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAA 464 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 4467888888889999999999999999887633 4455666688888773 45578899999999999883222 222
Q ss_pred HH---HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC
Q 044999 299 IA---EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN 352 (461)
Q Consensus 299 i~---~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~ 352 (461)
+. ..+.+..+..+|.+......+..++.........+..+.++|.++.+...+.
T Consensus 465 v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 465 VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 22 6677777888999999999988888855444344555679999998887665
No 233
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.48 E-value=3.5 Score=40.19 Aligned_cols=123 Identities=13% Similarity=0.035 Sum_probs=82.8
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Q 044999 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQA 203 (461)
Q Consensus 124 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~ 203 (461)
.-..++++ ..++ .|.+..++..+.+++..+|...+.+|+.++..-......+..|.+..+.+-+-+..+.+|..|..+
T Consensus 78 ~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~ 155 (885)
T COG5218 78 DMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKV 155 (885)
T ss_pred cCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33355554 2222 346777888888999999999999999998655555555666777777777777788999999999
Q ss_pred HHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCccch
Q 044999 204 IGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 204 L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
|+.+-....+.+.. ....|..+++ +++.+++.. ++.|+..++..+
T Consensus 156 L~~~Qe~~~neen~----~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~ 201 (885)
T COG5218 156 LCYYQEMELNEENR----IVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTY 201 (885)
T ss_pred HHHHHhccCChHHH----HHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcc
Confidence 99886554442221 2235566666 556677776 556665554433
No 234
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=91.23 E-value=16 Score=35.82 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcCCh--hhHHHHHhCC--Ch
Q 044999 313 EANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSYNE--ADRVALADAG--AV 382 (461)
Q Consensus 313 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--~i 382 (461)
+....+..++.||+..+-... .+..|..+|.+ .+..+.+.|+..+..+.... .....+.-.- .+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl 303 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVL 303 (464)
T ss_pred ccchhHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHH
Confidence 566677788888886543322 34557777732 23445667777777666622 1111111111 56
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 383 PIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 383 ~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
+.+...++.+++.+-......+.++.
T Consensus 304 ~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 304 PSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 77777777776666666666666666
No 235
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=16 Score=35.77 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHHHHHHHhcCC
Q 044999 339 GAIPILVNL-LRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL-HDESEELRDNAAESLINFSED 410 (461)
Q Consensus 339 g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~ 410 (461)
|++..|+.+ .++.+++|++.|..+|+-+|. ++. .++..++++ .+.++-+|...+.+|.--|..
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcC
Confidence 444445555 445566666666666666555 322 234444444 334555555555555444433
No 236
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.08 E-value=2.1 Score=38.44 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------HHHHHHhc----cCCHHHHHHHHHHHHHhhCCCCch
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------EHLVRILR----EGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~~l~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
...+...+..-+++-+-.++..++-++.++.....+. ..+..++. +..+..+..++++++|+-.++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3445555555555666677777776666666544442 23333332 346788899999999999998888
Q ss_pred hHHhhcC--CHHHHHHhhcCC----CHHHHHHHHHHHHHhcC-ChhhH-HHHHhCCChHHHHHhc-cC-CCHHHHHHHHH
Q 044999 333 PVIRNSG--AIPILVNLLRGE----NDEVREKVSGAIAQLSY-NEADR-VALADAGAVPIMIELL-HD-ESEELRDNAAE 402 (461)
Q Consensus 333 ~~l~~~g--~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~-~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~~~~~a~~ 402 (461)
..+..+. .+...+..+... +..++..++..+.|++. .-..+ ..=.....+..+++.+ .. .+++....++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 8887653 233333333333 67789999999999987 11111 0001111355556633 22 79999999999
Q ss_pred HHHHhcCCCcchHHHHH
Q 044999 403 SLINFSEDPLQHERISE 419 (461)
Q Consensus 403 ~L~~l~~~~~~~~~l~~ 419 (461)
++.+|...+.......+
T Consensus 225 AlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHCCSHHHHHHCC
T ss_pred HHHHHhccChhHHHHHH
Confidence 99999976655444433
No 237
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.99 E-value=29 Score=38.36 Aligned_cols=381 Identities=13% Similarity=0.066 Sum_probs=187.5
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
.+..+..++..+......+|..|.++|+.+....+ ..+.+ .-..+-+-+.. ...+++..|+..+....-.
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp-~vL~~~dvq~~Vh~R~~D------ssasVREAaldLvGrfvl~- 885 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADP-SVLSRPDVQEAVHGRLND------SSASVREAALDLVGRFVLS- 885 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh-HhhcCHHHHHHHHHhhcc------chhHHHHHHHHHHhhhhhc-
Confidence 45566777778887788999999999999981111 11222 22222233321 2233555577777765553
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc---CCChHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN---SCNDGTRRYLLEI 162 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~ 162 (461)
.++.....+ ..+..-..+....||+.+.+.++.++...+..-. .+..+.+++. +.+..++.-+..+
T Consensus 886 ~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~et 954 (1692)
T KOG1020|consen 886 IPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRET 954 (1692)
T ss_pred cHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHH
Confidence 343333332 3466666777888999999999999976654322 2334555554 2333588899999
Q ss_pred HHHhhCChHHH--HHHHhcCCHHHHHHHHcC-------CCHHHHHHHHHHH---HHhhcCchhHHHHHhcCChHHHHHhc
Q 044999 163 LSALALLREVR--RVLICLGGLRYLVEAVSF-------GSMVSRERACQAI---GLLAVTGRARRLLVELGVIPGLVELF 230 (461)
Q Consensus 163 L~~l~~~~~~~--~~~~~~~~l~~l~~~l~~-------~~~~~~~~a~~~L---~~l~~~~~~~~~~~~~~~i~~L~~ll 230 (461)
+.++-..+... ..-....-+...+....+ ..+.+-...+..- ++.+...+....-. ...+..+...+
T Consensus 955 f~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v-~~~~~L~~~cl 1033 (1692)
T KOG1020|consen 955 FLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKV-THVLNLLTHCL 1033 (1692)
T ss_pred HHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhc-chHHHHHHHHH
Confidence 88887322111 000001112222222211 1111111111000 11111111100000 01112222211
Q ss_pred c------------cCCHHHH-HHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC-----ChhHHHHHHHHHHHhc-c
Q 044999 231 H------------IGDWTTK-LVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP-----DSTGKEISEDVFCILA-V 291 (461)
Q Consensus 231 ~------------~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~-~ 291 (461)
. .+..+.+ ...+.+|..++. .+..+....-+..|...|.+. ...+....+.++.... .
T Consensus 1034 ~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fsk---irP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPl 1110 (1692)
T KOG1020|consen 1034 VEKISEVESDDMNEEESEVRLLAYLSTLFVFSK---IRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPL 1110 (1692)
T ss_pred HHHHHhhhhHhhhcccchhHHHHHHHHHHHHHh---cCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhh
Confidence 1 1122222 233444444443 344444333345555555544 2233444444444331 1
Q ss_pred CcccHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhh-cCCHHHHHHhhcCC--------CHHHHH
Q 044999 292 SEANANAIA----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRN-SGAIPILVNLLRGE--------NDEVRE 357 (461)
Q Consensus 292 ~~~~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~-~g~i~~L~~ll~~~--------~~~v~~ 357 (461)
-+.....+. +.|+.++-..+......|+.|++.++.. ..+...+.. ....-..++.+++. ....-.
T Consensus 1111 v~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1111 VANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQ 1190 (1692)
T ss_pred hccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Confidence 111111111 7788888777777888899999999863 233222221 11111122222222 112344
Q ss_pred HHHHHHHHhcCC-h------hh-----HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 358 KVSGAIAQLSYN-E------AD-----RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 358 ~a~~~L~~l~~~-~------~~-----~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
..+.+++-++++ . +. .......+++..|..+.+..+.++|..|...|.-+|...
T Consensus 1191 RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h 1256 (1692)
T KOG1020|consen 1191 RSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH 1256 (1692)
T ss_pred HHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC
Confidence 556667777661 1 11 112344566677777778888999999999999987554
No 238
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=90.85 E-value=2.6 Score=30.80 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=56.4
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999 337 NSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLI 405 (461)
Q Consensus 337 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 405 (461)
....+..|+++++.++...+..++..+..+..++.....+.+-|++..|-++-..-++..+...-..+-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 445678899999988877899999999999999998999999999999877776667777666655543
No 239
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.61 E-value=0.87 Score=39.00 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhCCCCchhHHhhcCC-------HHHHHHhhc-CCCHHHHHHHHHHHHHhcC-Chhh-HHHHHhCCChH
Q 044999 314 ANAAAADVLWDLAGYKHSVPVIRNSGA-------IPILVNLLR-GENDEVREKVSGAIAQLSY-NEAD-RVALADAGAVP 383 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~-------i~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~-~~~~~~~~~i~ 383 (461)
-|..|+.+|+.|+..+.|.+.+...+- +..|.+++. .+++..|+.|+..|.+|+. ++.. +....+.++|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 578999999999988888887776665 344555554 4578899999999999999 4443 35556788899
Q ss_pred HHHHhccCC
Q 044999 384 IMIELLHDE 392 (461)
Q Consensus 384 ~L~~ll~~~ 392 (461)
.|+.++.+.
T Consensus 220 ~Li~FiE~a 228 (257)
T PF12031_consen 220 HLIAFIEDA 228 (257)
T ss_pred HHHHHHHHH
Confidence 999999553
No 240
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.59 E-value=13 Score=36.41 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=77.6
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
|.+..+++.+.+++..+|..++.+|..++..-..-....-.|.+..|.+-+-+..+.++..|+.+|+.+-....+.+-.+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 56778888888999999999999999998766653344445677788887778889999999999998876533332221
Q ss_pred hcCCHHHHHHHhCC-CChhHHHHHHHHHHHhccCccc
Q 044999 260 EAGAIPLYAELLQG-PDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 260 ~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
...|..+++. ++.++|..| |.|+..++..
T Consensus 171 ----~n~l~~~vqnDPS~EVRr~a---llni~vdnsT 200 (885)
T COG5218 171 ----VNLLKDIVQNDPSDEVRRLA---LLNISVDNST 200 (885)
T ss_pred ----HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCc
Confidence 3456666654 467888854 5555544433
No 241
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=16 Score=36.72 Aligned_cols=182 Identities=11% Similarity=0.009 Sum_probs=111.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhc-cCh----hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHH
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVT-FGN----ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRR 174 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 174 (461)
+.|.+.|+..|..||..|+..+.++-- .++ +....+.+. -+..+.++|+++-+.+|..|..-+..+... -.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---FW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence 455677888899999999998886543 121 222333322 366788999999999999998777665411 11
Q ss_pred HHHhcC----CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh
Q 044999 175 VLICLG----GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 175 ~~~~~~----~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 249 (461)
.++-.. .+..++.-+..+ ..++|......|-.+..++.....+-. ++|.+-..+.+....++..+...|..+-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 122122 233334434333 558999999999999888766443322 4566666777888889988888887765
Q ss_pred cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
.....+ +.+---...++..|..++..+.+.-+..+.+.
T Consensus 331 ~vra~~--f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 331 AVRAAK--FWKICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hhhhhh--hhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 431111 11112244566666666655555555555444
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.21 E-value=7.6 Score=39.71 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=88.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC----CChHHHHHHHHHHHHhh----CCh
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS----CNDGTRRYLLEILSALA----LLR 170 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~----~~~ 170 (461)
+..+.+++..+... ...++..+..+.......-.. .+..+.+++.. .++.++..|+-+++.+. ...
T Consensus 397 v~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~ 470 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS 470 (618)
T ss_dssp HHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence 55666666665443 233444454443322111111 23445555553 34567777776666655 221
Q ss_pred ------HHHHHHHhcCCHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC---CHHH
Q 044999 171 ------EVRRVLICLGGLRYLVEAVS----FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG---DWTT 237 (461)
Q Consensus 171 ------~~~~~~~~~~~l~~l~~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~ 237 (461)
...........++.+...+. ..+.+.+..++.+|+|+.. ...++.+..++... +..+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~ 540 (618)
T PF01347_consen 471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFI 540 (618)
T ss_dssp ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHH
Confidence 01111122234555555554 4467888999999999833 23677777777755 6778
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHH
Q 044999 238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCI 288 (461)
Q Consensus 238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~ 288 (461)
|..|+.+|..++... ... +.+.+..++.+. ++++|..|...|..
T Consensus 541 R~~Ai~Alr~~~~~~--~~~-----v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 541 RVAAIQALRRLAKHC--PEK-----VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHTTTTGGGT---HHH-----HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--cHH-----HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 888888888775431 111 246677777544 67888777655543
No 243
>PRK09169 hypothetical protein; Validated
Probab=90.04 E-value=43 Score=38.89 Aligned_cols=108 Identities=14% Similarity=0.054 Sum_probs=47.6
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~ 127 (461)
.+..++..|.. -.+++ .=+.++..|..-... +......+ ..-.+..+++.|+ -++.+....++..+......
T Consensus 206 ~va~~lnalSK----wp~~~-~cr~a~~~lA~rL~~-~~~l~~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~ 278 (2316)
T PRK09169 206 EVANALNALSK----WPDSP-RCRNAAERLAERLAD-EPGLLQSL-RAQEVALLLNALSKWPDDEACRQAAEALAARLAR 278 (2316)
T ss_pred HHHHHHHHHhc----CCCcH-HHHHHHHHHHHHHhc-ChHHHHhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Confidence 55555555654 22221 222244555444442 33333232 2222344444443 34444566666666644435
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL 163 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 163 (461)
.+..+..+-..++-..|-.+-+-++......++..|
T Consensus 279 ~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~L 314 (2316)
T PRK09169 279 EPGLRLALDPQGVANALNALSKWPDTEACRQAAEAL 314 (2316)
T ss_pred ChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 545555544444444444444444433333333333
No 244
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=30 Score=36.79 Aligned_cols=374 Identities=15% Similarity=0.167 Sum_probs=203.5
Q ss_pred hhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCchhHHHH
Q 044999 19 VVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGALATEI 93 (461)
Q Consensus 19 l~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~ 93 (461)
+++++..+.......+..+- ++++.....+ .+|.++.-+.. +| ..+|......|-.-... +.-..++.+
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmeg--fP----sslqvkiLkilEyAVtvvncvPeqELl 549 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEG--FP----SSLQVKILKILEYAVTVVNCVPEQELL 549 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcC--CC----hHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence 44556555555555555554 6666665555 77887777764 11 12443332222111110 011111111
Q ss_pred HhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC------C---------------
Q 044999 94 GQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS------C--------------- 151 (461)
Q Consensus 94 ~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------~--------------- 151 (461)
.|.=+|+.+- ...+......+..+...+...++.+++-|.++.|...++. +
T Consensus 550 -------SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnps 622 (2799)
T KOG1788|consen 550 -------SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPS 622 (2799)
T ss_pred -------HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCC
Confidence 2223344332 2333344444446776777888999999988888765532 0
Q ss_pred C----------------hH----------HHH------HHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Q 044999 152 N----------------DG----------TRR------YLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRE 198 (461)
Q Consensus 152 ~----------------~~----------~~~------~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 198 (461)
+ +. +.+ ....+|..+. .+.++...+.+..++..++.++ -+++.|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHH
Confidence 0 00 000 1123344444 4566666677777777776666 3556777
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC--------C----HHHHHHHHHHHHHHhcC-ccchhhhhhcCCHH
Q 044999 199 RACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG--------D----WTTKLVAGNTLGVVAAH-VEYITPVAEAGAIP 265 (461)
Q Consensus 199 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~--------~----~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~ 265 (461)
..++++..|...++.+ +...-+-.++..++++ + ........++++.+-.. ...+..+.+.++..
T Consensus 701 slLrivscLitvdpkq---vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFs 777 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFS 777 (2799)
T ss_pred HHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHH
Confidence 8888887776554431 0111234455555542 1 12334455666665533 56677788888888
Q ss_pred HHHHHhCCC------Ch--h--HHHHHHHHHHHh-----ccCcccHHHHH-----HHHHHHhccCC--------------
Q 044999 266 LYAELLQGP------DS--T--GKEISEDVFCIL-----AVSEANANAIA-----EHLVRILREGD-------------- 311 (461)
Q Consensus 266 ~L~~ll~~~------~~--~--~~~~a~~~L~~l-----~~~~~~~~~i~-----~~l~~ll~~~~-------------- 311 (461)
.|...+..- .+ + +-..-...|..+ ..++.++..+. +.+..+|+...
T Consensus 778 lLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqll 857 (2799)
T KOG1788|consen 778 LLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLL 857 (2799)
T ss_pred HHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHH
Confidence 777665321 11 1 111111222211 23444443322 33333332111
Q ss_pred ----------H--HHHHHHHHHHHHhhCC-----------CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 312 ----------N--EANAAAADVLWDLAGY-----------KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 312 ----------~--~~~~~a~~~L~~l~~~-----------~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
| .--..|+..+..+-.+ ...++.+...|++..|++.+-...+..+..-+..+..+++
T Consensus 858 lElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaR 937 (2799)
T KOG1788|consen 858 LELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLAR 937 (2799)
T ss_pred HHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 1 1112333333333211 1346778899999999999888889999999999999999
Q ss_pred -ChhhHHHHHhCCChHHHHHhc---cCCCHHHHHHHHHHHHHhcCC
Q 044999 369 -NEADRVALADAGAVPIMIELL---HDESEELRDNAAESLINFSED 410 (461)
Q Consensus 369 -~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~ 410 (461)
++.+++.....|+++.|++++ .++.......+..++..|+..
T Consensus 938 aspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 938 ASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred cCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 999999999999999999977 234555555556555555443
No 245
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.86 E-value=11 Score=38.56 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=93.3
Q ss_pred ChHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCC----ChhHHHHHHHHHHHhc----cC
Q 044999 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGP----DSTGKEISEDVFCILA----VS 292 (461)
Q Consensus 222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~ 292 (461)
.+..+.+++.+......+ +...|..+.... .--..+ +..+..++++. ++.++..|..+++.+. ..
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 455666666664333332 445566655541 222222 56677777653 4667777887777773 22
Q ss_pred c-------c----cHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC---CHH
Q 044999 293 E-------A----NANAIAEHLVRIL----REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE---NDE 354 (461)
Q Consensus 293 ~-------~----~~~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~---~~~ 354 (461)
. . ....+.+.+.+.+ ..++.+.+..++.+|+|+.. ...++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 1 0 0111115555544 35577888999999999943 34677788887766 677
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc--CCCHHHHHHHHHHHHH
Q 044999 355 VREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH--DESEELRDNAAESLIN 406 (461)
Q Consensus 355 v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~ 406 (461)
+|..|+++|..++. .++. +.+.+..++. ..++++|..|..+|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 99999999998866 4421 2455666663 4678899888776655
No 246
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.86 E-value=14 Score=33.03 Aligned_cols=178 Identities=17% Similarity=0.093 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhcc----cCCHHHHHHHHHHHHHHhcCccch
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFH----IGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
...+...+..-+.+-+--++..++-+..+++....+...+ ....+..++. +..+..+..+++++.|+-.++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3444555544444557778888888877777655554433 2344444443 346778889999999999998888
Q ss_pred hhhhhcC--CHHHHHHHhCCC----ChhHHHHHHHHHHHhcc-----C--cccHHHHHHHHHHHhcc--CCHHHHHHHHH
Q 044999 256 TPVAEAG--AIPLYAELLQGP----DSTGKEISEDVFCILAV-----S--EANANAIAEHLVRILRE--GDNEANAAAAD 320 (461)
Q Consensus 256 ~~~~~~g--~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~-----~--~~~~~~i~~~l~~ll~~--~~~~~~~~a~~ 320 (461)
..+..+. .+...+..+... +..++..++..+.|++. . .+.+..+...+.+.+.. .+++....++.
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 8877653 344443333333 67788888889999852 1 22233345666674433 58999999999
Q ss_pred HHHHhhCCCCchhHHhhc-CCHHHHHHhhc-CCCHHHHHHH
Q 044999 321 VLWDLAGYKHSVPVIRNS-GAIPILVNLLR-GENDEVREKV 359 (461)
Q Consensus 321 ~L~~l~~~~~~~~~l~~~-g~i~~L~~ll~-~~~~~v~~~a 359 (461)
+|+++...+.......+. |+-..+...-. ...++++..+
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 999999766555555543 33333333332 3345555443
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.83 E-value=3.4 Score=29.89 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=54.5
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC-chhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFA-PQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~-~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.+.++..+..+.++.+.+|-++...|..|. +.. ....+..++..+++.|+. +|+-+-..|+.+|..|+..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d------~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKD------EDSYVYLNAIKGLAALADR 73 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCC------CCchHHHHHHHHHHHHHHH
Confidence 356777888889999999999999999999 444 333333388888888875 4566777799999999974
No 248
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.80 E-value=13 Score=32.51 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH
Q 044999 65 NLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV 144 (461)
Q Consensus 65 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L 144 (461)
..++..+.....+|..++..++ .+... +++.+..+.+.+....+..+...+..+-..++.. + +.+..+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~---f---~~L~~~ 79 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKN-VCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH---F---PFLQPL 79 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCc-cchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH---H---HHHHHH
Confidence 3568899999999999998521 33222 3566677777776665444444444444433221 1 233333
Q ss_pred HHHh--c------CC--ChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q 044999 145 IDLL--N------SC--NDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 145 ~~ll--~------~~--~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~ 208 (461)
+..+ + +. ..+........+..+| ..++ .-...++.+..++ ++.++..+..++.++..++
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3331 1 11 1133344445677777 4444 2223577788888 7778899999999999998
No 249
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.73 E-value=0.93 Score=32.82 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh
Q 044999 303 LVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA 371 (461)
Q Consensus 303 l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~ 371 (461)
.+..+.++.+-+|..++..|+.|..... .......+++..+...++++++-|-..|+.+|..|+. .++
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445566667778888888888886544 2333344677778888899999999999999999997 554
No 250
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.27 E-value=15 Score=32.64 Aligned_cols=217 Identities=15% Similarity=0.087 Sum_probs=126.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC--CChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999 101 SVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS--CNDGTRRYLLEILSALALLREVRRVLIC 178 (461)
Q Consensus 101 ~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 178 (461)
.|-..|.+.++.+|..+..++......-+... ....-+..|+++..+ .|......++..+..+.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 34567888999999999988886664332211 111224555554432 34445555566666665222211111 1
Q ss_pred cCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhcCccch
Q 044999 179 LGGLRYLVEAVS--FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 179 ~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
...+..+++-.. ......|..+...+..+..+....-.-...+.+..+++.+.. .||.....+...+..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 112333333222 224467888888888887665432111224577888888874 5889888888888887765222
Q ss_pred hhhhhcCCHHHHHHHhCC-------C---Ch--hHHHHHHHHHH-HhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 044999 256 TPVAEAGAIPLYAELLQG-------P---DS--TGKEISEDVFC-ILAVSEANANAIAEHLVRILREGDNEANAAAADVL 322 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~-------~---~~--~~~~~a~~~L~-~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L 322 (461)
....+.+.+.+.. + ++ -.++.-...|. .++.++.......|.+++-|.++.+.++..++.+|
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL 232 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTL 232 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 2223444444321 1 22 12333333444 34666666666669999999999999999999999
Q ss_pred HHhhC
Q 044999 323 WDLAG 327 (461)
Q Consensus 323 ~~l~~ 327 (461)
...+.
T Consensus 233 ~~c~~ 237 (262)
T PF14500_consen 233 KACIE 237 (262)
T ss_pred HHHHH
Confidence 88764
No 251
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=28 Score=35.44 Aligned_cols=167 Identities=10% Similarity=-0.000 Sum_probs=94.9
Q ss_pred HHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCC-cHHHHHH-HHHHHHHHHh--cCCchhHHHHHhcCCHHHHHhcC
Q 044999 32 TKLARVS-KFAPQDILAATIPILARLLGENNFSGNL-TRSIQQA-AAYCLKQIAS--QADGALATEIGQSGVINSVLRLF 106 (461)
Q Consensus 32 ~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~-~~~~~~~-a~~~L~~l~~--~~~~~~~~~~~~~~~l~~L~~ll 106 (461)
..+.-++ ....+..+..+++-+.+.|.......++ |...|.. |.+.+.++.. . .......+.+.=.++.++-.+
T Consensus 391 l~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 391 LFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhh
Confidence 3333344 6666666777888888888432222222 4556666 7777777765 2 222233333444455555566
Q ss_pred CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHH
Q 044999 107 PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL--GGLRY 184 (461)
Q Consensus 107 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~ 184 (461)
++..--.+.+++..+..+..+-+ ..-.-..+.+.....+.+.+-.++..|+-++.-+-.+......+-+. +.++.
T Consensus 470 ~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 67666667888888776643221 11222224555666777777788888888888877666555554432 34445
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 044999 185 LVEAVSFGSMVSRERACQ 202 (461)
Q Consensus 185 l~~~l~~~~~~~~~~a~~ 202 (461)
++.+-+.-+.+.....+.
T Consensus 547 LLsLSn~feiD~LS~vMe 564 (970)
T COG5656 547 LLSLSNTFEIDPLSMVME 564 (970)
T ss_pred HHHhcccccchHHHHHHH
Confidence 554444444454444443
No 252
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.10 E-value=11 Score=37.56 Aligned_cols=173 Identities=6% Similarity=0.026 Sum_probs=102.7
Q ss_pred HHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCchhHHhhcCC
Q 044999 269 ELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLVRILRE--GDNEANAAAADVLWDLAGYKHSVPVIRNSGA 340 (461)
Q Consensus 269 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 340 (461)
..+..-+++.+..|+.+|.-+..+...-..+. ..+..++.. .++..+..++++|.|+-.++..++.+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~-- 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSR-- 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence 33444567778888888887765554433222 222233322 46888889999999999887777776654
Q ss_pred HHHHHHhh----cCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC-----CCHHHHHHHHHHHHHhcC
Q 044999 341 IPILVNLL----RGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD-----ESEELRDNAAESLINFSE 409 (461)
Q Consensus 341 i~~L~~ll----~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~ 409 (461)
...+...+ ...+..++........|++. ...+ . +.++.+.+...+.. .+-+.......||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~-~---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN-E---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-c---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222 23345566665555556554 1111 1 14455555555422 233456678889999999
Q ss_pred CCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhH
Q 044999 410 DPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSI 452 (461)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 452 (461)
.+....++++...+..+.+..+... ..++.+..++.++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~~~-----~~~~~k~~a~~il 742 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKEAV-----SNPSGKNIARDIL 742 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHhc-----cCchhhHHHHHHH
Confidence 9888888888777777666555332 2344555555543
No 253
>PRK09169 hypothetical protein; Validated
Probab=88.43 E-value=56 Score=38.06 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=26.1
Q ss_pred hhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999 420 AIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD 460 (461)
Q Consensus 420 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 460 (461)
......+.+.++.+.+|.+ .+..+.++.....-+..+|+
T Consensus 705 ~f~aq~lAn~LnAlsKwp~--~~acr~A~~~LA~rL~~~~~ 743 (2316)
T PRK09169 705 AFDAQGVANALNALSKWPE--EEACRAAAEALAGRLAADAD 743 (2316)
T ss_pred hcCHHHHHHHHHHHHhccC--ccHHHHHHHHHHHHHhcChH
Confidence 3456677788888888884 44566666666666666654
No 254
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.11 E-value=10 Score=30.84 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=76.6
Q ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 181 GLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 181 ~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
.++.|+++++.+ ++.+|..++++++.+..-++.+......+. +.- .-...+...... .+.+... ....+...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~--~~~~~~~~~~~~---~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSK--SSENSNDESTDI---SLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Ccc--ccccccccchhh---HHhhccC-CCchHHHH
Confidence 467788888776 689999999999999887777443222111 100 000111111111 1111111 11222333
Q ss_pred hcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhc--cCccc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 260 EAGAIPLYAELLQGPD-STGKEISEDVFCILA--VSEAN---ANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~--~~~~~---~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
-..++..|+..++++. ..-+..+..++.++- ....+ -.++.|.+++.+++.++..++....-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3345778888887763 233334455555442 22222 2333399999999887788888777777664
No 255
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=88.10 E-value=19 Score=32.10 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcCcc--------chhhhhhcCCHHHHHHHhCCCC----hhHHHHHHHHHHHhccCcccHHHHHHHH
Q 044999 236 TTKLVAGNTLGVVAAHVE--------YITPVAEAGAIPLYAELLQGPD----STGKEISEDVFCILAVSEANANAIAEHL 303 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~--------~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~l 303 (461)
...+.+...|..+...++ .|-.+.-.+.+|.++.-+.+++ ......++..|..++.... ...+...+
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-~~~La~il 155 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-LPNLARIL 155 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-CccHHHHH
Confidence 445566667777765422 2222222345677777776666 1334455566776663221 11222222
Q ss_pred HHHhccCC---HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 044999 304 VRILREGD---NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAG 380 (461)
Q Consensus 304 ~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 380 (461)
....+... .+-...++..|+.-.. |+. ....+..|++++.++.+.++..++.+|..+-...+.+.. ...+
T Consensus 156 ~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~d 228 (262)
T PF14225_consen 156 SSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGAD 228 (262)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchH
Confidence 22222222 2222333333332211 222 223456688999999999999999999999884444433 4455
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHH
Q 044999 381 AVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 381 ~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
.+.++.++++++.-.-.......+
T Consensus 229 lispllrlL~t~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 229 LISPLLRLLQTDLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHH
Confidence 789999999766544333333333
No 256
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.77 E-value=2.3 Score=33.85 Aligned_cols=73 Identities=8% Similarity=0.144 Sum_probs=61.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCCCc
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 412 (461)
++..|.+-+.++++.++..|+..|-.+.. ....+..+.+.+.+..|.+++.. .++.++..+...+...+....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 46668888889999999999999999988 45567788888889999999976 799999999999998875443
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.57 E-value=18 Score=30.33 Aligned_cols=122 Identities=16% Similarity=0.046 Sum_probs=75.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHH
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRL 216 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~ 216 (461)
.++.++++.-+++..++..|+.++..+. ++.++. ..++|.++.+..++++.++..|...+..+....+. ...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il-----~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELIL-----RQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH-----hcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567788888899999999999987654 111111 12799999999999999999999999999776665 222
Q ss_pred HHhcCChHHHHHhccc--CCHH--H---HHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC
Q 044999 217 LVELGVIPGLVELFHI--GDWT--T---KLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG 273 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~--~~~~--~---~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~ 273 (461)
..+ ++..-...-.. ++.. . ......-+..+... ...|..+ +..+++.+..
T Consensus 84 ~~~--gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 84 YSE--GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHH--HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 222 34433333221 1111 1 33334445555443 4555555 5666666654
No 258
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.26 E-value=7.4 Score=31.65 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred ChHHHHHhcccC-CHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc---cCcccHH
Q 044999 222 VIPGLVELFHIG-DWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA---VSEANAN 297 (461)
Q Consensus 222 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~ 297 (461)
.++.|+.+++.+ ++.+|..++++|+.|..-+..+-+....+.- .-. -...+..... ..+.+.. ..++...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~--~~~~~~~~~~---~~l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS--SENSNDESTD---ISLPMMGISPSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc--cccccccchh---hHHhhccCCCchHHHHH
Confidence 567778888854 6899999999999998876555443322110 000 0011111111 1111111 2333333
Q ss_pred HHH-HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 298 AIA-EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 298 ~i~-~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
.++ ..|+++|++.+ ..-...++.++.++......+-.-.-..++|.++..+++.++..++....-|+.|.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333 78888887764 33333556666666533222112223347889999998777777777666555543
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.78 E-value=16 Score=32.76 Aligned_cols=145 Identities=21% Similarity=0.188 Sum_probs=94.6
Q ss_pred CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchh-HHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQD-ILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~-~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
|..+-+..+......++++|=..+.-++..+..|+ +++.-. .+.++|-.+++-++. ....+-+.|+.++..
T Consensus 82 ~fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKN------lRS~VsraA~~t~~d 155 (334)
T KOG2933|consen 82 PFDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKN------LRSAVSRAACMTLAD 155 (334)
T ss_pred ccCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHH
Confidence 44456777787888899999999999999999999 554433 344488888888875 334466678899998
Q ss_pred HHhcCCchhHHHHHhcCCHHHHHhc-CC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHH
Q 044999 81 IASQADGALATEIGQSGVINSVLRL-FP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTR 156 (461)
Q Consensus 81 l~~~~~~~~~~~~~~~~~l~~L~~l-l~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 156 (461)
+... ... .+.+ .+..++.. +. .++.-++..+-.+|..+..+-... -.++.|+..+.+.++.++
T Consensus 156 ifs~--ln~--~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r 222 (334)
T KOG2933|consen 156 IFSS--LNN--SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVR 222 (334)
T ss_pred HHHH--HHH--HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhh
Confidence 8873 211 1111 22333332 22 234456777777887777533211 135567777888888888
Q ss_pred HHHHHHHHHhh
Q 044999 157 RYLLEILSALA 167 (461)
Q Consensus 157 ~~a~~~L~~l~ 167 (461)
..++....+..
T Consensus 223 ~~a~~~~~~~v 233 (334)
T KOG2933|consen 223 AKAALCFSRCV 233 (334)
T ss_pred hhhhccccccc
Confidence 88877665543
No 260
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.01 E-value=12 Score=33.53 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=90.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHH
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLV 218 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 218 (461)
+...+..|.+.+......++..+..++ .+++........ .+..+++-+++....+-..|+.++..+...... ...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445666778888888889999999888 555544443333 566778888888889999999999888766555 222
Q ss_pred hcCChHHHH-Hhcc---cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 219 ELGVIPGLV-ELFH---IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 219 ~~~~i~~L~-~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
-...++ .++. .++.-+++.|-.+|..+..+..-. .+++.|+..++..++.++..++.++.+.
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 122222 2333 344567888888888877652211 2356777777777888877666655544
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.98 E-value=6.8 Score=31.16 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=59.1
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcC
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVT 210 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~ 210 (461)
++..|.+-+.+.++.++..|+..|-.+.. .......+...+++..|..++.. .+..++...+..+...+..
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 35567777888999999999999999983 45678888888999999999988 5889999999988877543
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.93 E-value=4 Score=32.40 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=60.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCc
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
.++..|.+-+.++++.++..|+..|-.+.. .......+.+.+.+..|.+++. ..++.++..+...+...+....
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 356678888899999999999998888888 3556777888888999999885 5788999999999998875443
No 263
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.34 E-value=6 Score=31.03 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=59.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC---CCHHHHHHHHHHHHHhcCCCcc
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD---ESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
++..|.+-++++++.++..|+.+|-.+.. .+..+..+.+...+..|+.++.. .++.++..+...+.+......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45668888899999999999999999888 34466777776778889998854 5889999999999988765443
No 264
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=83.83 E-value=39 Score=31.88 Aligned_cols=232 Identities=13% Similarity=0.105 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 044999 154 GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG-----SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLV 227 (461)
Q Consensus 154 ~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 227 (461)
.++..++..+...+ ...+.-..++. ..+..+.++|..- ...+...++..|..++.....+..+...+.++.++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 45555666665555 22222222211 2344444444321 23455566666666554432222222222222222
Q ss_pred HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCC-hhHHHHHHHHHHHhccCccc-HHHHH-HHHH
Q 044999 228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPD-STGKEISEDVFCILAVSEAN-ANAIA-EHLV 304 (461)
Q Consensus 228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~-~~~i~-~~l~ 304 (461)
+-+ ++-|++..++..+ +.+..-.+-+-.-+...+ ..-|..|+..+..|+..-+. ...+. ..+-
T Consensus 190 e~V-------------I~Pnl~~~e~D~E-lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~ 255 (370)
T PF08506_consen 190 EKV-------------IFPNLCLREEDEE-LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQ 255 (370)
T ss_dssp HHT-------------HHHHHS--HHHHH-HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-------------ccCccCCCHHHHH-HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 211 3445554433222 223332333333343333 34566777888888644222 12222 4444
Q ss_pred HHhc------cCCHHHHHHHHHHHHHhhCCCCc-------------hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999 305 RILR------EGDNEANAAAADVLWDLAGYKHS-------------VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ 365 (461)
Q Consensus 305 ~ll~------~~~~~~~~~a~~~L~~l~~~~~~-------------~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 365 (461)
.++. +.++..+..|+..+..++..... ...+....++|.|. --.+..|-++..|++.+..
T Consensus 256 ~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~ 334 (370)
T PF08506_consen 256 QLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYT 334 (370)
T ss_dssp HHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHH
Confidence 4443 34688899999999999954321 22333444455554 1224567788899988887
Q ss_pred hcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999 366 LSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 366 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
.-.. -.++.+.. ++|.++..+.+++.-+...|+.++
T Consensus 335 Fr~~-l~~~~l~~--~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 335 FRNQ-LPKEQLLQ--IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HGGG-S-HHHHHH--HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHhh-CCHHHHHH--HHHHHHHHhCCCCcchhhhhhhhC
Confidence 7761 11233333 689999999999999999888764
No 265
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.73 E-value=14 Score=30.32 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=72.1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCC--hHHHHHhccC-CCHHHHHHHHHHHHHhcCCCcchH
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGA--VPIMIELLHD-ESEELRDNAAESLINFSEDPLQHE 415 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 415 (461)
..+..+..+++++++.-+-.++..+...+..-. .+.+.+++. +..|+..++. +.+.+...++.++..+...-.+..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456678889999888888888877777775211 345545443 6777888855 567788899999999876666666
Q ss_pred HHHHhhCCchHHhHHHHHHHhhh
Q 044999 416 RISEAIGIPSFQSMQSRLTRIRA 438 (461)
Q Consensus 416 ~l~~~~~~~~~~~l~~~l~~~~~ 438 (461)
.+.+....+.+..+++.+.++.+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~ 126 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQ 126 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHh
Confidence 67766678888888888877775
No 266
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.64 E-value=29 Score=30.29 Aligned_cols=192 Identities=16% Similarity=0.079 Sum_probs=110.2
Q ss_pred HhcCCChHHHHHHHHHHHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 044999 147 LLNSCNDGTRRYLLEILSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPG 225 (461)
Q Consensus 147 ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 225 (461)
+-+..+++.+...+..|..++.+. ..... +++.+..+...+..+.+..+.+.+..+....+..- +.++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~ 78 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQP 78 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHH
Confidence 556678899999999999999665 44333 35566777777777777778888888766554421 22333
Q ss_pred HHHh-----c---c--cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccCcc
Q 044999 226 LVEL-----F---H--IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVSEA 294 (461)
Q Consensus 226 L~~l-----l---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 294 (461)
++.. . . +...+.......++..++...+.+ -...++.+..++ +..++.++..++..|..+...+-
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 3333 1 1 122344444456777777762221 122477888888 67788888989999888873221
Q ss_pred cHHHHH-HHHHHHhccC-CHHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCC
Q 044999 295 NANAIA-EHLVRILREG-DNEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGEN 352 (461)
Q Consensus 295 ~~~~i~-~~l~~ll~~~-~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~ 352 (461)
..-.-. ..+..-+..+ .|.+...-+..+..+... +...-......++..+.++....+
T Consensus 155 vd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 155 VDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred ccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 110000 4455544333 455555544444444432 222222234456666666666544
No 267
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.63 E-value=23 Score=29.51 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=67.3
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhccCccc------------------HHHHH-------HHHHHHhccC-CHHHHHHHH
Q 044999 266 LYAELLQGPDSTGKEISEDVFCILAVSEAN------------------ANAIA-------EHLVRILREG-DNEANAAAA 319 (461)
Q Consensus 266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~i~-------~~l~~ll~~~-~~~~~~~a~ 319 (461)
.+.-++.++++.+|..|+.++..|-.+... ...+. ..|+..+..+ ++.+....+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344456788999999999998877332210 01111 5666666544 678888999
Q ss_pred HHHHHhhCCCCc---hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 320 DVLWDLAGYKHS---VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 320 ~~L~~l~~~~~~---~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+++..+..+... ...+.. ..+..+..++.+.++.++..++.+++.+..
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999875332 222221 234555666778889999999988888876
No 268
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.34 E-value=23 Score=28.98 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh----hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA----TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~----~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
..+......+.+++++.++..|-.++..+.........+.+.+ .+..++..|+. . +.+.....++.+|..+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~----~-~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK----P-DPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC----C-CCHHHHHHHHHHHHHH
Confidence 3466777889999999999999888888887773333444533 89999999996 3 4455666688888877
Q ss_pred Hhc--CCchhHHHHHhc---CCHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 044999 82 ASQ--ADGALATEIGQS---GVINSVLRLFPQSDDSFRTVLVKCLRVFV 125 (461)
Q Consensus 82 ~~~--~~~~~~~~~~~~---~~l~~L~~ll~~~~~~~~~~~~~~l~~l~ 125 (461)
... +.++..+++.-. ++++.++++++. ......+..++..+.
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 763 134444444333 234444555543 233444444444443
No 269
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=83.12 E-value=4.9 Score=31.74 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=59.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhcCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD------ESEELRDNAAESLINFSED 410 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 410 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.+.+.+..|++++.. .++.|+..+...+...+..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999988888 45677888888889999999953 5789999999999887644
No 270
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=59 Score=33.26 Aligned_cols=322 Identities=13% Similarity=0.071 Sum_probs=167.2
Q ss_pred HHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 044999 17 QAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQ 95 (461)
Q Consensus 17 ~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 95 (461)
....+..--.+.+|+..+..+. +-.....+.++.+.....++. ++..++..|+.+|..+.. +++....+.+
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~n------n~lpv~ieAalAlq~fi~--~~q~h~k~sa 538 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKN------NHLPVMIEAALALQFFIF--NEQSHEKFSA 538 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhc------CCcchhhhHHHHHHHHHh--chhhhHHHHh
Confidence 3345556677888899888887 554455555577777888875 445688889999999998 6676666655
Q ss_pred c--CCHHHHHhcCCCCCHHHHHHHHHHHH-HHhc----cChhhHHHHHHcCCHHHHHHHhcCCC------hHHHHHHHHH
Q 044999 96 S--GVINSVLRLFPQSDDSFRTVLVKCLR-VFVT----FGNENRVIVARNGGLEIVIDLLNSCN------DGTRRYLLEI 162 (461)
Q Consensus 96 ~--~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~~------~~~~~~a~~~ 162 (461)
+ +.++.|+.+-+.-+.++...+...+. ..+. -.++....+++ ..+..-..++.+++ .+-+..|...
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 4 44666666665555554444443333 2222 11111111111 12223333444331 1334455555
Q ss_pred HHHhh---CChHHHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH-
Q 044999 163 LSALA---LLREVRRVLI---CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW- 235 (461)
Q Consensus 163 L~~l~---~~~~~~~~~~---~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~- 235 (461)
|..+. ..-+++..+. +....|.+--.+.+.-.+.-..|+..+-+.+.....-. -..-|+.+.+.+++.++..
T Consensus 618 L~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~-pimwgi~Ell~~~l~~~~t~ 696 (970)
T COG5656 618 LRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE-PIMWGIFELLLNLLIDEITA 696 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh-hhhhHHHHHHHhcccccchh
Confidence 54433 2222222222 22344544455566666777888888877654443311 1113455666666665553
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhhcCC-----HHHHHHHhCCCCh--hHHHHHHHHHHHhcc--CcccHHHHHHHHHHH
Q 044999 236 TTKLVAGNTLGVVAAHVEYITPVAEAGA-----IPLYAELLQGPDS--TGKEISEDVFCILAV--SEANANAIAEHLVRI 306 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~-----i~~L~~ll~~~~~--~~~~~a~~~L~~l~~--~~~~~~~i~~~l~~l 306 (461)
...+.+.-++.|+... .+..+.+.|. .......+.+++. +-...++..+..+.. .++--.+-.|.+.+.
T Consensus 697 ~y~ee~~~al~nfity--G~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~v 774 (970)
T COG5656 697 VYSEEVADALDNFITY--GKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISV 774 (970)
T ss_pred hhHHHHHHHHHHHHHh--CccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHH
Confidence 5566777788887653 2222333322 2223333444433 445566666665532 222222222333222
Q ss_pred hc------cCCHHHHHHHHH-HHHHhhCCC-CchhHHhhcCCHHHHHHhhcC
Q 044999 307 LR------EGDNEANAAAAD-VLWDLAGYK-HSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 307 l~------~~~~~~~~~a~~-~L~~l~~~~-~~~~~l~~~g~i~~L~~ll~~ 350 (461)
.. +..+-....+.. ++.|+-..| +..+.+-+.|......+..-+
T Consensus 775 ags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~ 826 (970)
T COG5656 775 AGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFS 826 (970)
T ss_pred HhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHh
Confidence 22 222333444444 445555554 455666677887776655443
No 271
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=82.49 E-value=42 Score=31.18 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=110.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhc-cChhhHHHHH-HcCC-HHHHHHHhcCC-----C--------hHHHHHHHHH
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVT-FGNENRVIVA-RNGG-LEIVIDLLNSC-----N--------DGTRRYLLEI 162 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~-~~g~-i~~L~~ll~~~-----~--------~~~~~~a~~~ 162 (461)
+..+.+.|++..+.....+...+..++. .+......+. ..+. .+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788899998888877777777778887 5544444443 3332 33455555321 1 2788888887
Q ss_pred HHHhh--CChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHH-hhcCchh----HHHHHhcCChHHHHHhcccCC
Q 044999 163 LSALA--LLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGL-LAVTGRA----RRLLVELGVIPGLVELFHIGD 234 (461)
Q Consensus 163 L~~l~--~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~----~~~~~~~~~i~~L~~ll~~~~ 234 (461)
+..+. .++..+..+.. .+.+..+++.+..++.++....+.++.. +...... +..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77766 56667777776 4578888999988888999999998885 4443322 445666778889999888766
Q ss_pred H----HHHHHHHHHHHHHhcCccc
Q 044999 235 W----TTKLVAGNTLGVVAAHVEY 254 (461)
Q Consensus 235 ~----~~~~~a~~~L~~l~~~~~~ 254 (461)
+ .+...+-..|..++.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 8888888899998876443
No 272
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=73 Score=33.03 Aligned_cols=198 Identities=14% Similarity=0.082 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC
Q 044999 154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG 233 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~ 233 (461)
.+...|+..|.+++..+.....+...+++..+.+..--++...|.. ...+.+.+.+..+=.-+...
T Consensus 308 ~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e--------------DeElFED~pleYiRRDlEGs 373 (960)
T KOG1992|consen 308 YLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE--------------DEELFEDNPLEYIRRDLEGS 373 (960)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh--------------hHHHhccCHHHHHHHhcccC
Confidence 4566788888888877777777777777777776655554433322 22334445566666666655
Q ss_pred CHH-HHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHh-CC--CChhHHHHHHHHHHHhccCcccHH------------
Q 044999 234 DWT-TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELL-QG--PDSTGKEISEDVFCILAVSEANAN------------ 297 (461)
Q Consensus 234 ~~~-~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll-~~--~~~~~~~~a~~~L~~l~~~~~~~~------------ 297 (461)
|.+ -|+.|+..++.|+.+-+....-+-.+-+..++.-. .+ .++.-+..+......++.......
T Consensus 374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv 453 (960)
T KOG1992|consen 374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDV 453 (960)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccH
Confidence 554 45667888888888743332222122233333322 22 255556666666665543321111
Q ss_pred --HHHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 298 --AIAEHLVRILRE----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 298 --~i~~~l~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
-+...+..-|.+ ..|-++..+++-+...- +.-..+.++. .+|.+++.|..++..+...|+.++-.+-.
T Consensus 454 ~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR-~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 454 VDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR-NQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHHHHHhhHHhccCccccccchhhcccceeeeec-ccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 011333333333 24555555554443332 2223333333 68899999999888888888887776655
No 273
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=52 Score=36.14 Aligned_cols=73 Identities=7% Similarity=0.004 Sum_probs=36.4
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhH-HHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDI-LAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~-l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
.|..+.+.|.+..+.--...+..++.++.+.+ +...+.. ..+ .+.....+... .+...++.+....++.+
T Consensus 793 ~~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~----s~~~~evr~~sl~~l~s 868 (1610)
T KOG1848|consen 793 KIINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDN----SSRGVEVRISSLEALVS 868 (1610)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHh----cCccceeeHHHHHHHHH
Confidence 45666666666666655555566666666666 2222222 222 22222222222 12223355666677777
Q ss_pred HHh
Q 044999 81 IAS 83 (461)
Q Consensus 81 l~~ 83 (461)
+.+
T Consensus 869 ile 871 (1610)
T KOG1848|consen 869 ILE 871 (1610)
T ss_pred HHh
Confidence 776
No 274
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=80.29 E-value=13 Score=29.33 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=56.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhc
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF------GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~ 209 (461)
++..+.+-+.+.++.++..|+.+|-.+.. ...++..+...+++..+++++.. .+..++...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999883 46678888888899999999963 367899988888876543
No 275
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.11 E-value=59 Score=32.72 Aligned_cols=155 Identities=9% Similarity=0.049 Sum_probs=85.5
Q ss_pred HhcCCChHHHHHHHHHHHHhhCChHHHHHHHh----cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 044999 147 LLNSCNDGTRRYLLEILSALALLREVRRVLIC----LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGV 222 (461)
Q Consensus 147 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 222 (461)
.+-.-....+..|+.+|+-+..+...-..+.. ...+..++..+. .++..+..++++|.|+-.++..++.+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~-- 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR-- 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence 33344556777888888877755444333333 124555555554 56778889999999998886666666553
Q ss_pred hHHHHHhc----ccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCC---C--ChhHHHHHHHHHHHhcc
Q 044999 223 IPGLVELF----HIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQG---P--DSTGKEISEDVFCILAV 291 (461)
Q Consensus 223 i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~---~--~~~~~~~a~~~L~~l~~ 291 (461)
...+...+ ..++..++........|++.. ..+-+ .+..+.+...+.. . +-+.....+.+|.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 23332222 233445555544445555543 22111 3444444444432 2 23444556667778877
Q ss_pred CcccHHHHH-----HHHHHHhc
Q 044999 292 SEANANAIA-----EHLVRILR 308 (461)
Q Consensus 292 ~~~~~~~i~-----~~l~~ll~ 308 (461)
.+....++. ..+++-++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHH
Confidence 776655554 44555443
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.02 E-value=16 Score=28.61 Aligned_cols=71 Identities=15% Similarity=-0.025 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF---GSMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~a~~~L~~l~~~~ 211 (461)
+..|.+-+.++++.++..|+.+|-.+.. .+.+...+....++..++.++.. .+..++..++..+...+...
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5567777888999999999999999983 34567777777888889999975 37799999999988775543
No 277
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.64 E-value=14 Score=29.18 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=53.2
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCC-HH---HHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSD-DS---FRTVLVKCLRVF 124 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~---~~~~~~~~l~~l 124 (461)
++..|.+-|++ .+|.+|..|+..|-.+..+.....+..+....++..|.+++.+.. .. |+..+...+...
T Consensus 43 a~~~l~krl~~------~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 43 AARALRKRLKH------GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 66777788876 567899999999998888644678888888889999999877543 22 677777666654
Q ss_pred h
Q 044999 125 V 125 (461)
Q Consensus 125 ~ 125 (461)
.
T Consensus 117 ~ 117 (140)
T PF00790_consen 117 A 117 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 278
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=79.41 E-value=22 Score=26.05 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=52.0
Q ss_pred HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAI 204 (461)
Q Consensus 137 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L 204 (461)
..+.+..|++..+.........++..+..+..++.....+.+-|+..-+-++=..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44456677777777777788999999999999999999999999888866665555666666555444
No 279
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.39 E-value=75 Score=32.19 Aligned_cols=230 Identities=15% Similarity=0.104 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHH----HHHhcC---CHHHHHHHHcCCCH--HHHHHHHHHHHHhhcCc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRR----VLICLG---GLRYLVEAVSFGSM--VSRERACQAIGLLAVTG 211 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~---~l~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~ 211 (461)
+-.|+.+++.-+.+-......-+.. .. ...+. .+...| .+..+.+.+.++.. ......+..+......+
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P 390 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP 390 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC
Confidence 4456666666555433333333332 11 22222 333334 55666666766532 22222222222222111
Q ss_pred hhHHHHHhcCChHHHHHhcccC----CHHHHHHHHHHHHHHhcC----ccchhhhhhcCCHHHHHHHhC----CCChhHH
Q 044999 212 RARRLLVELGVIPGLVELFHIG----DWTTKLVAGNTLGVVAAH----VEYITPVAEAGAIPLYAELLQ----GPDSTGK 279 (461)
Q Consensus 212 ~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~ll~----~~~~~~~ 279 (461)
.. ..+..+..++.++ .+.++..++.+++++... .+.+...+....++.+...+. ..+.+.+
T Consensus 391 -t~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 391 -TE------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred -CH------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 11 1456666777643 456777777777766542 221111222334555555543 3456667
Q ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcC--CCH
Q 044999 280 EISEDVFCILAVSEANANAIAEHLVRILR---EGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRG--END 353 (461)
Q Consensus 280 ~~a~~~L~~l~~~~~~~~~i~~~l~~ll~---~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~--~~~ 353 (461)
..++.+|+|+..... .+.+...+. ..++.+|..|+++|..++. .+. .+-+.|..+..+ .++
T Consensus 464 ~~~LkaLGN~g~~~~-----i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 464 QLYLKALGNAGHPSS-----IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPP 530 (574)
T ss_pred eeHHHhhhccCChhH-----HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCCh
Confidence 778888888865321 133444443 2257899999999998874 322 234556666664 467
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc-cCCCHHHHHHHH
Q 044999 354 EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL-HDESEELRDNAA 401 (461)
Q Consensus 354 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~ 401 (461)
++|..|..+|...--+.. .+..+...+ .+++.++.....
T Consensus 531 EvRiaA~~~lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 531 EVRMAAVLVLMETKPSVA---------LLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHHHHHhcCCCHH---------HHHHHHHHHhhcCcHHHHHHhH
Confidence 788888766655432222 244455555 345566655443
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.12 E-value=16 Score=29.08 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=57.7
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhc
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALL--REVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~ 209 (461)
++..|.+-+.+.++.++..|+..|-.+..+ ......+...+++..|..++.. .++.++..++..+..-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 455677778889999999999999998843 6678888888999999999974 477899999988877654
No 281
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.96 E-value=9.1 Score=29.98 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=57.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCC--CHHHHHHHHHHHHHhcCCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDE--SEELRDNAAESLINFSEDP 411 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~ 411 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.+.+.+..|..++... .+.++..+...+...+...
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45568888889999999999999998888 456677788888899999988553 3458999999888876543
No 282
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.95 E-value=91 Score=31.79 Aligned_cols=188 Identities=9% Similarity=0.050 Sum_probs=115.0
Q ss_pred HhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh---HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999 177 ICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA---RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH- 251 (461)
Q Consensus 177 ~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~- 251 (461)
++.|+++.++.---+. ...+....-..|+.+...... .+.|.-.=.=|.|..-|+-.+..+|..|+..+.++---
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 4566777665543222 223333333444444433322 22222222335666677788999999999999887532
Q ss_pred -ccc----hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc-----Ccc-cHHHHHHHHHHHh-ccCCHHHHHHHH
Q 044999 252 -VEY----ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-----SEA-NANAIAEHLVRIL-REGDNEANAAAA 319 (461)
Q Consensus 252 -~~~----~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-----~~~-~~~~i~~~l~~ll-~~~~~~~~~~a~ 319 (461)
++. ...+.+.. ...+.++|.++-|.+|..|..-++.... -|. .-..+...+.+-+ .+...++|....
T Consensus 206 dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 222 23333333 5678899999999999888876665422 111 1111113333322 344568999999
Q ss_pred HHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 320 DVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 320 ~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
..|..+..+|.....+-. ++|.+-..+.+.+..||.++...|..+-
T Consensus 285 ~gl~~~l~np~sh~~le~--~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 285 KGLPMILDNPLSHPLLEQ--LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCcHHHHcCccchhHHHH--HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 999999998877555443 6777778888889999998887776664
No 283
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=76.12 E-value=34 Score=30.91 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=48.9
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHHHHh----c--------CCChHHHHHHHHHHH
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR-VIVARNGGLEIVIDLL----N--------SCNDGTRRYLLEILS 164 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~g~i~~L~~ll----~--------~~~~~~~~~a~~~L~ 164 (461)
++|.++.++.+.++.++..++.++..+....+... ..+...|..+.+.+.+ . .....+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 58999999999999999999999998886443332 3366777666655533 2 223356667777777
Q ss_pred Hhh
Q 044999 165 ALA 167 (461)
Q Consensus 165 ~l~ 167 (461)
.+.
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 764
No 284
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.04 E-value=1.2e+02 Score=32.70 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=136.5
Q ss_pred HHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChH--HHHHHHhcCCHHHHHHHHcCC--
Q 044999 118 VKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLRE--VRRVLICLGGLRYLVEAVSFG-- 192 (461)
Q Consensus 118 ~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~--~~~~~~~~~~l~~l~~~l~~~-- 192 (461)
-.++..+...+.++++.+.+..|+..++.++- +..-|...++++..+. .++. ..+. +-.+++.|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqvhhqe------lmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQVHHQE------LMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccccHHH------HHHHHHHHHhcce
Confidence 44666788888899999999999999888873 3445666677776665 3332 1122 33455556553
Q ss_pred ------C----HHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc----------CCHHHHHHHHHHHHH----
Q 044999 193 ------S----MVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI----------GDWTTKLVAGNTLGV---- 247 (461)
Q Consensus 193 ------~----~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~----------~~~~~~~~a~~~L~~---- 247 (461)
+ .......+++++.+...+.. +..+.+.+++..|...+.. ++.-+...-...|..
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTl 814 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTL 814 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHH
Confidence 1 13455666777777666555 8888999998888876641 111111111222221
Q ss_pred -HhcCccchhhhhhcCCHHHHHHHhCCC-----Chh--H-------------------HHHHHHHHHHh-----cc-Cc-
Q 044999 248 -VAAHVEYITPVAEAGAIPLYAELLQGP-----DST--G-------------------KEISEDVFCIL-----AV-SE- 293 (461)
Q Consensus 248 -l~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~--~-------------------~~~a~~~L~~l-----~~-~~- 293 (461)
++.++.++..+...-.-..+.+++... +.+ + -..|+..+..+ +. .|
T Consensus 815 avcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs 894 (2799)
T KOG1788|consen 815 AVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS 894 (2799)
T ss_pred HHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC
Confidence 223355554443322222333333211 111 0 01111112111 00 01
Q ss_pred ----ccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhc---CCCHHHHHHHH
Q 044999 294 ----ANANAIA-----EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLR---GENDEVREKVS 360 (461)
Q Consensus 294 ----~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~---~~~~~v~~~a~ 360 (461)
..++.+. ..+++.+-...|..+..-+..+..+++ ++.+.+..-..|.++.|++++. +++......+.
T Consensus 895 Gqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 895 GQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred CCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 1133333 777788878889999999999999985 6788888888899998888764 33333444444
Q ss_pred HHHHHhcC
Q 044999 361 GAIAQLSY 368 (461)
Q Consensus 361 ~~L~~l~~ 368 (461)
.++..|+.
T Consensus 975 kIvemLga 982 (2799)
T KOG1788|consen 975 KIVEMLGA 982 (2799)
T ss_pred HHHHHHhh
Confidence 44444433
No 285
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=75.10 E-value=68 Score=29.45 Aligned_cols=156 Identities=17% Similarity=0.118 Sum_probs=94.4
Q ss_pred hHHHHHHhhccCCCCCC--CcHHHHHHHHHHHHHHHhcCCchhHHHHHhc-----------CCHHHHHhcCC------CC
Q 044999 49 TIPILARLLGENNFSGN--LTRSIQQAAAYCLKQIASQADGALATEIGQS-----------GVINSVLRLFP------QS 109 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----------~~l~~L~~ll~------~~ 109 (461)
+|..|++.+-. .+ ...+.+..|+.++.....+ +++.+..+.+. .....|.+.|- +.
T Consensus 35 vi~~LL~~~L~----~~~~~~f~lR~AA~~c~kay~~~-N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~ 109 (312)
T PF04869_consen 35 VIDALLNLMLN----ENSVQPFDLRCAALYCFKAYFYN-NEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL 109 (312)
T ss_dssp HHHHHHHHHT-----TT--S-HHHHHHHHHHHHHHHTT--HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS
T ss_pred HHHHHHHHHhc----cccccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC
Confidence 56666655543 33 3455556688888888876 67777666542 01112333333 34
Q ss_pred CHHHHHHHHHHHHHHhccChhhHHHHHHc------------CCHHHHHHHhc-----CCChHHHHHHHHHHHHhh-CChH
Q 044999 110 DDSFRTVLVKCLRVFVTFGNENRVIVARN------------GGLEIVIDLLN-----SCNDGTRRYLLEILSALA-LLRE 171 (461)
Q Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~------------g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~-~~~~ 171 (461)
|+.-...++..+..+..++++.|....+- ..++.+..+|- +.++.++..-+..|.... .++.
T Consensus 110 dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~ 189 (312)
T PF04869_consen 110 DPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPD 189 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHH
Confidence 55545667778888888888888777533 13455555543 346677777778777776 8888
Q ss_pred HHHHHHhcC-CHHHHHHHHcCC---CHHHHHHHHHHHHHhhc
Q 044999 172 VRRVLICLG-GLRYLVEAVSFG---SMVSRERACQAIGLLAV 209 (461)
Q Consensus 172 ~~~~~~~~~-~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~ 209 (461)
....+...+ .++.|++..... +.-++..++..|+-+-.
T Consensus 190 AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 190 AVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 888888875 899999975432 56777777777766543
No 286
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=74.21 E-value=29 Score=27.40 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=66.0
Q ss_pred CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc----CC------C-chhHH----Hh----hHHHHHHhhccCCCCCCC
Q 044999 6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS----KF------A-PQDIL----AA----TIPILARLLGENNFSGNL 66 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la----~~------~-~~~~l----~~----~i~~l~~~l~~~~~~~~~ 66 (461)
.+|.+.++.+++++.+ ++.........|..+. +. . -+..+ .+ +++.+.+.+.. ..+
T Consensus 22 ~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~----~~~ 96 (148)
T PF08389_consen 22 QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQ----SSS 96 (148)
T ss_dssp TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCH
T ss_pred hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc
Confidence 4799999999999998 4655656666666665 20 0 11122 22 45555566664 222
Q ss_pred c--HHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHH
Q 044999 67 T--RSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCL 121 (461)
Q Consensus 67 ~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l 121 (461)
. ......+..++...... .....+...+.++.+.+++.+++. +..|+.|+
T Consensus 97 ~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 97 EANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp CCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 1 55666688888887763 333455567789999999965554 56666553
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.77 E-value=27 Score=27.35 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFGS--MVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~a~~~L~~l~~ 209 (461)
+..|.+-+.+.++.++..|+.+|-.+.. .......+...+++..|..++.... +.++..++..+..-+.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4457777888999999999999999984 4667888888889999999988763 3488888888877654
No 288
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.51 E-value=35 Score=30.86 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=46.4
Q ss_pred CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHH----------HHH-HHHHHHhc--------cCCHHHHHHHHHHH
Q 044999 262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANAN----------AIA-EHLVRILR--------EGDNEANAAAADVL 322 (461)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----------~i~-~~l~~ll~--------~~~~~~~~~a~~~L 322 (461)
-++|.++.++++.+++++..++.+|..+........ .+. +.+..++. ..+..+...+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 358999999999999999999999999955333222 222 66666665 33456677777777
Q ss_pred HHhh
Q 044999 323 WDLA 326 (461)
Q Consensus 323 ~~l~ 326 (461)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7775
No 289
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=73.38 E-value=52 Score=27.34 Aligned_cols=76 Identities=21% Similarity=0.038 Sum_probs=47.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHH
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVAL 376 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 376 (461)
+.+++-|+....-.+-.|...+..|... ...+-.-+-...+..|...|.+.++++...++.+|..|.. ++..-..+
T Consensus 41 pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL 118 (183)
T PF10274_consen 41 PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL 118 (183)
T ss_pred HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4444444444444444555555555543 3333333345678888889999999999999999999965 44333333
No 290
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=73.07 E-value=36 Score=28.30 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=66.3
Q ss_pred HHhcCCChHHHHHHHHHHHHhhCCh-HHHHHHHhc-------------------CCHHHHHHHHcCC-CHHHHHHHHHHH
Q 044999 146 DLLNSCNDGTRRYLLEILSALALLR-EVRRVLICL-------------------GGLRYLVEAVSFG-SMVSRERACQAI 204 (461)
Q Consensus 146 ~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-------------------~~l~~l~~~l~~~-~~~~~~~a~~~L 204 (461)
-++.++++++|..|+.++..+-.+. ..-...-+. ..-..|+..++.+ +..+....++++
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777788888888887776332 211111111 1123455556555 667888999999
Q ss_pred HHhhcCchhHHHHHhcCChH----HHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 205 GLLAVTGRARRLLVELGVIP----GLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~i~----~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
..+....+..+. +.|.++ .+-.++.+.|..++..++.+++.+...
T Consensus 127 a~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 127 AVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 999888776322 234444 444556688899999999899888765
No 291
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=72.85 E-value=7.7 Score=28.81 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHH
Q 044999 157 RYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSR 197 (461)
Q Consensus 157 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 197 (461)
...+..+..++..++.-..+++.|+++.|+.+|.|+|.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 46677888899999999999999999999999999987654
No 292
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=7.4 Score=35.48 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC--CCCHHHHHHHHHHHHHHhccChhhHHHHHH
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFP--QSDDSFRTVLVKCLRVFVTFGNENRVIVAR 137 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (461)
..+.+.+|+.. .++.++.+.+-||++.++.-.. +.+|-++.....|+..|...+.++++.+..
T Consensus 376 vir~ia~lcyk-~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYK-FSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHh-CCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56688999987 7899999999999998887654 678999999999999999999899887764
No 293
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=72.36 E-value=95 Score=29.88 Aligned_cols=245 Identities=14% Similarity=0.058 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-C
Q 044999 74 AAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-N 152 (461)
Q Consensus 74 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~ 152 (461)
+-..|..+....+............+..|+.++.++|+..|...-..+..+-......|..++.. ....+.+..... .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCccc
Confidence 55566666653111112233455678899999999999988877777776665554555555433 455566665433 3
Q ss_pred hHHHHHHHHHHHHhhCC-h----HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCchh-HHHHHhcCChHH
Q 044999 153 DGTRRYLLEILSALALL-R----EVRRVLICLGGLRYLVEAVSFGS-MVSRERACQAIGLLAVTGRA-RRLLVELGVIPG 225 (461)
Q Consensus 153 ~~~~~~a~~~L~~l~~~-~----~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~ 225 (461)
..-....+++++.+..+ . +....+.. ..++.+..... ......-..++..+...++. ... ++..
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~----~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~ 259 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLR----KVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKG 259 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHH----HTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHH
Confidence 44556666777666532 1 11112221 22333333332 12233334444444333322 111 1223
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh---ccCcccHHHHHH
Q 044999 226 LVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL---AVSEANANAIAE 301 (461)
Q Consensus 226 L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l---~~~~~~~~~i~~ 301 (461)
++..=-..+..-...-+.-+..+... ++..-.-+.......+...+.+.+..|.+.|+..+.|= .....+...+.|
T Consensus 260 llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p 339 (409)
T PF01603_consen 260 LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILP 339 (409)
T ss_dssp HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHH
T ss_pred HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHH
Confidence 33322233333333333344444333 11111111122356677778888888888777665442 112233444445
Q ss_pred HHHHHhc----cC-CHHHHHHHHHHHHHhhCC
Q 044999 302 HLVRILR----EG-DNEANAAAADVLWDLAGY 328 (461)
Q Consensus 302 ~l~~ll~----~~-~~~~~~~a~~~L~~l~~~ 328 (461)
.+..-+. .. +..++..|..++..+...
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5554442 22 567777777777777643
No 294
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.11 E-value=2e+02 Score=33.19 Aligned_cols=292 Identities=15% Similarity=0.081 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHH------HHHHHHhcCCc-hhHHHHH
Q 044999 25 ALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAY------CLKQIASQADG-ALATEIG 94 (461)
Q Consensus 25 ~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~------~L~~l~~~~~~-~~~~~~~ 94 (461)
.+...|...++.+. +...+.++.+.++..+.-.+. . .-..+|.++.. +|..++..... ..-...+
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~----~-r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v 873 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKS----A-RQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEV 873 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhcc----c-hhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHH
Confidence 44555666677777 333333444433333333332 2 22335554433 34444442110 1111222
Q ss_pred hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCCh---
Q 044999 95 QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLR--- 170 (461)
Q Consensus 95 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~--- 170 (461)
..-....++..+...++..+-.++.++..++..-+. ..+.. +..+.+++=+. ..++..|..-.-++..+-...
T Consensus 874 ~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 223355667778888888788888888777753211 11111 12334444444 445544443333333332111
Q ss_pred HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCH---HHHHHHHHHH
Q 044999 171 EVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDW---TTKLVAGNTL 245 (461)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~---~~~~~a~~~L 245 (461)
...+. -..++..+..+-++. ++.++.+++.++..+...... ....++. .+..+..++.+..+ ++...--+++
T Consensus 951 ~s~qh--l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 951 GSGQH--LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred CCchh--cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 11111 112456666666666 559999999999998877665 4333332 34444444443222 2222111111
Q ss_pred H------HHhcC--ccchhhh-------hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc---CcccHHHHHHHHHHHh
Q 044999 246 G------VVAAH--VEYITPV-------AEAGAIPLYAELLQGPDSTGKEISEDVFCILAV---SEANANAIAEHLVRIL 307 (461)
Q Consensus 246 ~------~l~~~--~~~~~~~-------~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~i~~~l~~ll 307 (461)
. ++... ++.+.-. .+....-...-++..+++.++..+..+|.++.. ...+-..++..+..++
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence 1 22111 1111111 111112222333444577788888888877732 2234445556677777
Q ss_pred ccCCHHHHHHHHHHHHHhhC
Q 044999 308 REGDNEANAAAADVLWDLAG 327 (461)
Q Consensus 308 ~~~~~~~~~~a~~~L~~l~~ 327 (461)
.+..--.+.....+++.+..
T Consensus 1108 ~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhH
Confidence 66666666666666666653
No 295
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=70.14 E-value=73 Score=27.65 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCH------------------HHHHHHHHHHHHHhcCccch
Q 044999 194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDW------------------TTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 194 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------------~~~~~a~~~L~~l~~~~~~~ 255 (461)
......++..+..|...++....+.+.+.++.+.+.+...++ .....-...|+.++.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 445567777888888887776666688888888777763211 12233456788899888888
Q ss_pred hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
..+-+.++...+..++...+. ......++.+|-..-+.... ..+-+.|.+++..+|..|...|+.+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R--~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPR--IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHH--HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888888999999999876532 22222355566322222111 34566778889999999999988774
No 296
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=69.90 E-value=2.1e+02 Score=32.75 Aligned_cols=337 Identities=12% Similarity=0.102 Sum_probs=153.6
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+-++....+.++++-....++...+..|=.+. +..+ .+++..|..++.. +.+ .....+.+|.+|.-
T Consensus 189 d~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h----~~v~~~L~~ll~~----~~~---L~~~iLd~Ls~L~L-- 255 (1426)
T PF14631_consen 189 DSEELTDKLFEVLSIAPVELQKEIISSLPEILDDSQH----DEVVEELLELLQE----NPE---LTVPILDALSNLNL-- 255 (1426)
T ss_dssp SHHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGH----HHHHHHHHHHHHH-----ST---THHHHHHHHHHS----
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchhH----HHHHHHHHHHHhc----CCc---hhhhHHHHHhcCCC--
Confidence 45667778888888777777777666666666 3322 2245666666665 333 44446777777776
Q ss_pred CchhHHHHHh----------cCCHHHHHhcCC-CCCHHHHHHHHHHHH-HHhccCh-------hhHHHHHH---------
Q 044999 86 DGALATEIGQ----------SGVINSVLRLFP-QSDDSFRTVLVKCLR-VFVTFGN-------ENRVIVAR--------- 137 (461)
Q Consensus 86 ~~~~~~~~~~----------~~~l~~L~~ll~-~~~~~~~~~~~~~l~-~l~~~~~-------~~~~~~~~--------- 137 (461)
+.+....+++ ...+|.+++.|- +-++.-.......++ ++-.... ..+..+..
T Consensus 256 s~~~l~~vr~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~ 335 (1426)
T PF14631_consen 256 SPELLEEVREKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGN 335 (1426)
T ss_dssp -HHHHHHHHHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH----------------------------
T ss_pred CHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCcccccccc
Confidence 4444333322 123666665432 111111122222222 1110000 00000000
Q ss_pred -----cCCHHHHHHHhcCC---ChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q 044999 138 -----NGGLEIVIDLLNSC---NDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 138 -----~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~ 208 (461)
.+....+++.+++. ...+.+.-++++.++.... +...+..++-++ .+.+..-+..+-.++.+-.
T Consensus 336 ~~~s~~~~~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~-------~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI 408 (1426)
T PF14631_consen 336 QENSSQDCEKLILDVLKSGLRFSKDLSEAWIKAIESLEDAS-------DHKVIDLWLLLILYSINEDNRKSIEKILKKKI 408 (1426)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGST-------T--THHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhccHHHHHHHHHHhcCCCcc-------ccchHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence 00111222323221 1222222233333332111 112344444443 2223344555555666555
Q ss_pred cCchhHHHHH----------hcCChHHHHHh----cccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC
Q 044999 209 VTGRARRLLV----------ELGVIPGLVEL----FHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 209 ~~~~~~~~~~----------~~~~i~~L~~l----l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
........+. =.+.++.++.+ +++.++.++.-+......+-...+ ...+..++..|+..+-++
T Consensus 409 ~~g~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg 485 (1426)
T PF14631_consen 409 KSGHITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSG 485 (1426)
T ss_dssp TTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH-
T ss_pred HhCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCC
Confidence 4443322111 13456666654 457788888877766666555421 122233477888877666
Q ss_pred ChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhh
Q 044999 275 DSTGKEISEDVFCILAVSEANANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL 348 (461)
Q Consensus 275 ~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll 348 (461)
+..-...|+.+|..|+... ...+. ..+++.+..-+..-......+|+.++........-+....--.+-+.+
T Consensus 486 ~~~ev~~aL~vL~~L~~~~--~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQL 563 (1426)
T PF14631_consen 486 NSQEVDAALDVLCELAEKN--PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQL 563 (1426)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhh
Confidence 5555578899999997532 22222 444445555566666667888888884322211122223344455677
Q ss_pred cCCCHHHHHH----HHHHHHHhcC
Q 044999 349 RGENDEVREK----VSGAIAQLSY 368 (461)
Q Consensus 349 ~~~~~~v~~~----a~~~L~~l~~ 368 (461)
.+.++..+.. ++..+..++.
T Consensus 564 ss~~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 564 SSSNPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCcHHHHHHhHHHHHHHHHHHHH
Confidence 7888777764 3344444544
No 297
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=69.78 E-value=65 Score=26.96 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=88.1
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCH
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAI 341 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i 341 (461)
++.++++..+.+..++..|+..+.... .+-.+....+|.++.+..++++.++..|...+..+.. ++.....-... ++
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~-gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE-GI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH-HH
Confidence 567778888889999999999988774 4445566666999999999999999999999999974 33332222222 23
Q ss_pred HHHHHhhc---CCCH-HH---HHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC--------CCHHHHHHHHHHHH
Q 044999 342 PILVNLLR---GEND-EV---REKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD--------ESEELRDNAAESLI 405 (461)
Q Consensus 342 ~~L~~ll~---~~~~-~v---~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~ 405 (461)
..-.++-. .... .. ......-+..+.. +...|..+ +..|++.+.. ..+.-......+..
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~ 163 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFLAE 163 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 33222221 1111 11 3444555666666 56666666 4445555522 23444555666666
Q ss_pred HhcCCC
Q 044999 406 NFSEDP 411 (461)
Q Consensus 406 ~l~~~~ 411 (461)
||+.-|
T Consensus 164 nLA~l~ 169 (187)
T PF12830_consen 164 NLATLP 169 (187)
T ss_pred HHhcCC
Confidence 666444
No 298
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=68.03 E-value=19 Score=38.81 Aligned_cols=111 Identities=18% Similarity=0.098 Sum_probs=71.4
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 87 (461)
.-..++.+...+.+.+..+|..|+++++.++....++.+..++..++-++.. .++...|..+...+..+... .
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~-----~~~~~~r~~a~e~~~~l~~~--l 886 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGD-----LDKFVRRQGADELIELLDAV--L 886 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhhHhhhhhHHHHHHHHHHh--h
Confidence 3356688888889999999999999999999666666666677777777763 22222233354455555442 1
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFV 125 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~ 125 (461)
..-......=.+++|.+.+++....++..+..++..+.
T Consensus 887 ~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 887 MVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cccccccceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 00001111124677888888888888888887777554
No 299
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.01 E-value=1.1e+02 Score=34.36 Aligned_cols=118 Identities=14% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHcCCHHHHHHHhcCCCh---HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhh
Q 044999 134 IVARNGGLEIVIDLLNSCND---GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLA 208 (461)
Q Consensus 134 ~~~~~g~i~~L~~ll~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~ 208 (461)
.+.+..++|.+-+++-+..+ ..|..-+..+...-......+.....++...++.+..++ +...+...+.+|++-.
T Consensus 1535 ~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~V 1614 (1758)
T KOG1791|consen 1535 KIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGV 1614 (1758)
T ss_pred hhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcC
Confidence 34455677777777765544 466777777777777777777778888899999998876 6677889999999988
Q ss_pred cCchh-HHHHHhcCChHHHHHhcccCC--HHHHHH-HHHHHHHHhcC
Q 044999 209 VTGRA-RRLLVELGVIPGLVELFHIGD--WTTKLV-AGNTLGVVAAH 251 (461)
Q Consensus 209 ~~~~~-~~~~~~~~~i~~L~~ll~~~~--~~~~~~-a~~~L~~l~~~ 251 (461)
..+.. +..+-..|....+..++.+.. +-.... ....+.++-..
T Consensus 1615 k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1615 KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 88777 556666888999999998652 223333 34455555443
No 300
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=67.45 E-value=88 Score=27.58 Aligned_cols=153 Identities=19% Similarity=0.156 Sum_probs=81.6
Q ss_pred cHHHhHHHHHHHhhcCC-----------HHHHHHHHHHHHhhcCCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHH
Q 044999 7 NWEEAFNRFEQAVVSGS-----------EALQVKALTKLARVSKFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQA 73 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~-----------~~~~~~a~~~l~~la~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~ 73 (461)
.|++..|.+..++...- ......|...|+ ++++ +++.++++++. +++.
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa---------q~re~~A~~~li~l~~~----~~~~------ 88 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLA---------QFREERALPPLIRLFSQ----DDDF------ 88 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH---------HHhhhhhHHHHHHHHcC----Ccch------
Confidence 46666777777766421 122233443433 2233 89999999986 3321
Q ss_pred HHHHHHHHHhc-CCchhHHHH--HhcCCHHHHHhcCCCCC--HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH-
Q 044999 74 AAYCLKQIASQ-ADGALATEI--GQSGVINSVLRLFPQSD--DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL- 147 (461)
Q Consensus 74 a~~~L~~l~~~-~~~~~~~~~--~~~~~l~~L~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l- 147 (461)
+..+..+ ..+.....+ +-.|-++.|.+++.+++ .-++..+..++..++..++..|..+.+. +..++..
T Consensus 89 ----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~--f~~ll~~~ 162 (249)
T PF06685_consen 89 ----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY--FRELLNYF 162 (249)
T ss_pred ----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHH
Confidence 1111110 011222222 23366888999988775 4468888888889988888888887764 4555553
Q ss_pred hcCCChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHH
Q 044999 148 LNSCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRY 184 (461)
Q Consensus 148 l~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~ 184 (461)
+...+..+...-+..+..+. .--+..+...+.|.++.
T Consensus 163 l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 163 LERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred hccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 44433332233333333333 11222334445555544
No 301
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=65.75 E-value=1.4e+02 Score=29.14 Aligned_cols=236 Identities=12% Similarity=0.089 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHhhHH-HHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHhcCCchhHHHHHhcCCHHHH
Q 044999 25 ALQVKALTKLARVSKFAPQDILAATIP-ILARLLGENNFSGNLTRSIQQA-AAYCLKQIASQADGALATEIGQSGVINSV 102 (461)
Q Consensus 25 ~~~~~a~~~l~~la~~~~~~~l~~~i~-~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~l~~L 102 (461)
..|..|+++||.++..-+...+..... .|+..|.+ ... .|+. ++..+..-+........... -....+.|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S----~sa---~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L 173 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNS----PSA---TQRLLAALVLEEWAKACKERNPSPP-PQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcc----hhH---HHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHH
Confidence 568889999999992213333344455 58888886 333 6776 77888888773111111100 11234566
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHH-----HHHHHhc---CCCh-----HHHHHHHH-HHHH---
Q 044999 103 LRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLE-----IVIDLLN---SCND-----GTRRYLLE-ILSA--- 165 (461)
Q Consensus 103 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~-----~L~~ll~---~~~~-----~~~~~a~~-~L~~--- 165 (461)
...|..+++..-...+..+..+-.+....-..+.+.|.++ .|-...+ ...+ +.....+. ....
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 6667644433333333333333322223334444555422 1111111 1111 11111111 1111
Q ss_pred -hhCChHH--HHHHHhc-CCHHHHHHHHc----CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHH
Q 044999 166 -LALLREV--RRVLICL-GGLRYLVEAVS----FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWT 236 (461)
Q Consensus 166 -l~~~~~~--~~~~~~~-~~l~~l~~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~ 236 (461)
+...... .+.+-+. .-+..-+...+ ..+..++...+.++..+-.-++-- .-+|..|++-++ .++..
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KL-----nPiIrpLMdSIK~Een~~ 328 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKL-----NPIIRPLMDSIKREENEL 328 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-----cHHHHHHHHHhhccccHH
Confidence 1111111 1111111 11111122211 113345555555555553332210 235777888777 45788
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC
Q 044999 237 TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG 273 (461)
Q Consensus 237 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (461)
.|..++.+|..|...-..+..-....++..|+.++-.
T Consensus 329 LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~ 365 (441)
T PF12054_consen 329 LQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCV 365 (441)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhcc
Confidence 9999999888876542233333344556777777643
No 302
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.58 E-value=1.4e+02 Score=29.28 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH
Q 044999 68 RSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID 146 (461)
Q Consensus 68 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ 146 (461)
.+.++.+...|..+... .+......+ ..+.+.+. ...++.-..-..++..|+.++.+. ...+.+..+.+..
T Consensus 43 ~e~R~~~~~ll~~~i~~-~~~~~~~~R-----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 43 SEARRAALELLIACIKR-QDSSSGLMR-----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLS 114 (464)
T ss_pred HHHHHHHHHHHHHHHHc-cccccHHHH-----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHH
Confidence 34555577777777764 222111111 11222222 233333445556677777665444 3356667777776
Q ss_pred Hhc
Q 044999 147 LLN 149 (461)
Q Consensus 147 ll~ 149 (461)
.+.
T Consensus 115 wl~ 117 (464)
T PF11864_consen 115 WLE 117 (464)
T ss_pred HHH
Confidence 653
No 303
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.57 E-value=66 Score=25.40 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC-CHH---HHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG-SMV---SRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~-~~~---~~~~a~~~L~~l~~ 209 (461)
+..|.+-+.+.++.++..|+.+|-.+.. .+..+..+....++..|..++.+. ... ++..++..+...+.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999983 357778888888999999988755 333 88888888876543
No 304
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=65.14 E-value=1.3e+02 Score=29.54 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=113.3
Q ss_pred HHHhHHHHHHHhh-cCCHHHHHHHHHHHHhhc-----CCCchh------------HHHh-hHHHHHHhhccCCCCCCCc-
Q 044999 8 WEEAFNRFEQAVV-SGSEALQVKALTKLARVS-----KFAPQD------------ILAA-TIPILARLLGENNFSGNLT- 67 (461)
Q Consensus 8 ~~~~~~~l~~ll~-~~~~~~~~~a~~~l~~la-----~~~~~~------------~l~~-~i~~l~~~l~~~~~~~~~~- 67 (461)
..+.+..+.+.++ ++.-.++.+|+..|++|- +.+.|. .+.+ +|..+++.=+. |.+.
T Consensus 95 lnevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~Gkk----Gpe~v 170 (589)
T PF11229_consen 95 LNEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKK----GPESV 170 (589)
T ss_pred HHHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHcccc----CCccC
Confidence 5566777777777 467788888988888764 122221 1111 34444433332 3331
Q ss_pred -HHHHHHHHHHHHHHHhcC--CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH
Q 044999 68 -RSIQQAAAYCLKQIASQA--DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV 144 (461)
Q Consensus 68 -~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L 144 (461)
+...+.++..+......- ++.+-.. .+.+|+++ +...+++..+......-+... .+...+...=..|.+
T Consensus 171 pp~lvkvvl~~ia~vgeS~qyPPVNWaa-----lLsPLMRl--nfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpl 242 (589)
T PF11229_consen 171 PPSLVKVVLKPIATVGESYQYPPVNWAA-----LLSPLMRL--NFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPL 242 (589)
T ss_pred CHHHHHHHHHHhhhcCCCCCCCCccHHH-----HhhHHHhc--cccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcch
Confidence 223333333333332210 1112111 25566665 334666777665544444333 334444444344444
Q ss_pred HHHhcCCChHHHHHHHHHHHHhh-C-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHh--c
Q 044999 145 IDLLNSCNDGTRRYLLEILSALA-L-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVE--L 220 (461)
Q Consensus 145 ~~ll~~~~~~~~~~a~~~L~~l~-~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~ 220 (461)
+.-++ ...+.+-+..+.... . .++..+.|++.-++..+-..-...++++...++..|..-...+......-. +
T Consensus 243 i~sLs---~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc 319 (589)
T PF11229_consen 243 IHSLS---VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLC 319 (589)
T ss_pred hhhhh---HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 43332 344555555555554 2 233335555543333332222234678888888888875544442222222 3
Q ss_pred CChHHHHHhccc----CCHHHHHHHHHHHHHHhcC
Q 044999 221 GVIPGLVELFHI----GDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 221 ~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~ 251 (461)
.....+++++-+ .+-+.-...+.||..++..
T Consensus 320 ~ttekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~ 354 (589)
T PF11229_consen 320 ETTEKIFDLLPNKIQRNEVELYIGVAKCLSEMTDT 354 (589)
T ss_pred HHHHHHHHhCcccccHHHHHHHHHHHHHHhhcCHH
Confidence 367777777743 2334445567777777664
No 305
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=64.70 E-value=52 Score=30.50 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcC--CHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCchhHHHHHh-------cC
Q 044999 154 GTRRYLLEILSALALLREVRRVLICLG--GLRYLVEAVSFG---SMVSRERACQAIGLLAVTGRARRLLVE-------LG 221 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~ 221 (461)
.+|..|+..+..+.........++..+ .+.-|++++..+ ..+++..|+.+|..++....-...+.. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 466677777777777788888888877 999999999865 558999999999999986655333322 45
Q ss_pred ChHHHHH
Q 044999 222 VIPGLVE 228 (461)
Q Consensus 222 ~i~~L~~ 228 (461)
++..++.
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555544
No 306
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.74 E-value=7.5 Score=28.88 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999 316 AAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVRE 357 (461)
Q Consensus 316 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~ 357 (461)
...+..+..|+..|+.-..+++.|+++.|+.+|...+.++..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 367788889999999999999999999999999988766543
No 307
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=62.54 E-value=20 Score=28.50 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=24.1
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHH
Q 044999 382 VPIMIELLHDESEELRDNAAESLINFSEDPLQHERIS 418 (461)
Q Consensus 382 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 418 (461)
+..|+.++.++++++...|+.+|.+-..-.+....+.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~dv~ 132 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFNDVA 132 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 8889999988888888899999887765555443443
No 308
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.30 E-value=3.1e+02 Score=32.12 Aligned_cols=256 Identities=9% Similarity=0.028 Sum_probs=133.8
Q ss_pred CCChHHHHHHHHHHHHhhCChHHHHH----HHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 044999 150 SCNDGTRRYLLEILSALALLREVRRV----LICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIP 224 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~~~~~~~~~----~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 224 (461)
+.+..++..|+..|..++..--.++. -.....+..+..++.+. +.+++...++++.++...... .+ .+ +++
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~--nI-kS-GWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN--NV-KS-GWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hh-hc-CcH
Confidence 34557788888888887721111111 11234566666666544 779999999999988554332 22 12 667
Q ss_pred HHHHhcc----cCCHHHHHHHHHHHHHHhcC-cc-c----hhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhc---
Q 044999 225 GLVELFH----IGDWTTKLVAGNTLGVVAAH-VE-Y----ITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILA--- 290 (461)
Q Consensus 225 ~L~~ll~----~~~~~~~~~a~~~L~~l~~~-~~-~----~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~--- 290 (461)
.++.++. ..++.+...|..++..+..+ -. . ...+ ..+|..+..+.+.. +.++--.|+..|.+++
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 7776665 55778888888888877653 11 0 0111 12344455554433 3555556666666441
Q ss_pred -cCc------------------------c------cHH---HHH----HHHHHHhccCCHHHHHHHHHHHHHhhCC--CC
Q 044999 291 -VSE------------------------A------NAN---AIA----EHLVRILREGDNEANAAAADVLWDLAGY--KH 330 (461)
Q Consensus 291 -~~~------------------------~------~~~---~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~ 330 (461)
..+ + ... .+- ..+.++..+..++||..|+..|..+-.. ..
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 000 0 000 011 4444455667899999999998877632 11
Q ss_pred c---hhHHhhcCCHHHHHHhhcCC-------------------C----HHHHHHHHHHHHHhcC-ChhhHHHHHh--CCC
Q 044999 331 S---VPVIRNSGAIPILVNLLRGE-------------------N----DEVREKVSGAIAQLSY-NEADRVALAD--AGA 381 (461)
Q Consensus 331 ~---~~~l~~~g~i~~L~~ll~~~-------------------~----~~v~~~a~~~L~~l~~-~~~~~~~~~~--~~~ 381 (461)
. -...+-.+++-.+...++.. + ..+......+|.++.. ....-..+.. .+.
T Consensus 1382 Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~ 1461 (1780)
T PLN03076 1382 FSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKV 1461 (1780)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222224444444444310 0 0123344444555544 2222122211 123
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 382 VPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 382 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
+..|...+..++..+...+..+|.+|....
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 333444445577777777888887776544
No 309
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.75 E-value=1.4e+02 Score=30.45 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=90.8
Q ss_pred HHHHHH-hCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHH
Q 044999 265 PLYAEL-LQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL-REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIP 342 (461)
Q Consensus 265 ~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~ 342 (461)
+.+++- -.+.++..|..|-.+|..++.++++-... .-++ ++..|--+..|..+|..+.....-...-.+.++-.
T Consensus 8 e~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskC----qlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir~ 83 (1082)
T KOG1410|consen 8 ESLCKDLYESTDPTARHRAEKALAELSESPECLSKC----QLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHH----HHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 334433 35668888999999999999888763322 1123 34456677788888888875533222222334445
Q ss_pred HHHHhhcCCCHH----HHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 343 ILVNLLRGENDE----VREKVSGAIAQLSY---NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 343 ~L~~ll~~~~~~----v~~~a~~~L~~l~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.+++++..+.|. +....+..++.+++ ....+....=.+.+..+.+.++.++.+-..-+..+|..|.
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 677888775544 44455566666766 3444555555667888999998888887777788887775
No 310
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=61.60 E-value=53 Score=26.02 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=54.9
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHH-HHHhccC---CCHHHHHHHHHHHHHhcCCC
Q 044999 340 AIPILVNLLR-GENDEVREKVSGAIAQLSY--NEADRVALADAGAVPI-MIELLHD---ESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 340 ~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~-L~~ll~~---~~~~~~~~a~~~L~~l~~~~ 411 (461)
++..|.+-+. +.++.++..|+..|-.+.. ....+..+...+.+.. |++++.. .+..++..+...+...+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4555777676 4588899999988888888 4566777888888887 8998853 34689999999998887543
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=61.12 E-value=39 Score=25.95 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=47.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhC-CChHHHHHhccC--------CCHHHHHHHHHHHHHhc
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADA-GAVPIMIELLHD--------ESEELRDNAAESLINFS 408 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~-~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~ 408 (461)
++..|.+-|++.++.|+.+++.+|..|+. ++..+..+.+. ..|..+..+-.. .+..||..|-.++..|.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45668888888899999999999999999 66666666553 223443333221 24567777777776664
Q ss_pred C
Q 044999 409 E 409 (461)
Q Consensus 409 ~ 409 (461)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 3
No 312
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=61.08 E-value=31 Score=32.13 Aligned_cols=73 Identities=8% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCC
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 411 (461)
.++..+.+.+...++.|...|+..+..+.. ....+..+...+....|..++. +.++.++......+.+.+...
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 356778999999999999999999888887 4556777788888888999997 688999999888888887643
No 313
>PLN03205 ATR interacting protein; Provisional
Probab=60.69 E-value=1.5e+02 Score=27.93 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHH---hcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhc-
Q 044999 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLV---ELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAA- 250 (461)
Q Consensus 181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~---~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~- 250 (461)
.++.|+.+..-++..+...+++.|..+..+--+ +..+- +.+ +-.|++++. +....++..|+...--+..
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~N-WvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDAN-WHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCccccccccccc-HHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 355667777777777888888877765443222 21111 122 223333332 2334455555544433332
Q ss_pred -C-ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCc------------------cc--------HHHHH-
Q 044999 251 -H-VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSE------------------AN--------ANAIA- 300 (461)
Q Consensus 251 -~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~------------------~~--------~~~i~- 300 (461)
+ ...|+.+....+++.+..+|+.+ ...+++.++..|.-|-..+ ++ .+.+.
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 2 34566676667788888888765 5677777776554332111 00 11222
Q ss_pred --HHHHHHhccC-----CHHHHHHHHHHHHHhhCC-CCchhHHh------hcCCHHHHHHhh
Q 044999 301 --EHLVRILREG-----DNEANAAAADVLWDLAGY-KHSVPVIR------NSGAIPILVNLL 348 (461)
Q Consensus 301 --~~l~~ll~~~-----~~~~~~~a~~~L~~l~~~-~~~~~~l~------~~g~i~~L~~ll 348 (461)
+.|.+++... +-+.+..++..|+.++.. ..+-+.+. ..+++..+++.|
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvL 544 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLL 544 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHH
Confidence 6666776432 457788888889888854 33333332 334455555554
No 314
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=59.52 E-value=42 Score=25.49 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=32.8
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL 179 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 179 (461)
+++.|+.-|.++++++...|+.+|...+.++...+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 5778888898999999999999999999766666665543
No 315
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=58.88 E-value=1.6e+02 Score=27.80 Aligned_cols=150 Identities=17% Similarity=0.085 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHHHhhCChHH-HHHHHhcCCHHHHHHH-Hc--CCCHHHHHHHHHHHHH
Q 044999 132 RVIVARNGGLEIVIDLLNSCND-GTRRYLLEILSALALLREV-RRVLICLGGLRYLVEA-VS--FGSMVSRERACQAIGL 206 (461)
Q Consensus 132 ~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~~-l~--~~~~~~~~~a~~~L~~ 206 (461)
...+.+.+-.+.+-+-++.++. ..|..|+..+..++...+. ...++- +.+..++.- -. +.++.-+..|+..++.
T Consensus 203 D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 203 DEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 3444455555555555554443 5667788888888843221 111211 123333221 11 3367888899999999
Q ss_pred hhcCchh-H------------HHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC
Q 044999 207 LAVTGRA-R------------RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG 273 (461)
Q Consensus 207 l~~~~~~-~------------~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~ 273 (461)
++..... + ..+....++|-|. --.+..+-++..|+..+...-..-+ ++. -.+++|.++..|.+
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~-~~~--l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP-KEQ--LLQIFPLLVNHLQS 357 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHH--HHHHHHHHHHHTTS
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCC
Confidence 9877643 1 2233333444444 1124466677787777777665411 111 12468999999999
Q ss_pred CChhHHHHHHHHH
Q 044999 274 PDSTGKEISEDVF 286 (461)
Q Consensus 274 ~~~~~~~~a~~~L 286 (461)
++.-++..|+.++
T Consensus 358 ~~~vv~tyAA~~i 370 (370)
T PF08506_consen 358 SSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHH
T ss_pred CCcchhhhhhhhC
Confidence 9888888777653
No 316
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=57.19 E-value=77 Score=33.57 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCH
Q 044999 23 SEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVI 99 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l 99 (461)
.+.++.++...+++++ ++ .+.+ .+|.|++-|+. . ++..++...+.+++.+|. .+ ..+.+ ..+
T Consensus 944 ~~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~----~-~~~aiRnNiV~am~D~C~--~Y---Tam~d-~Yi 1008 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEY----N-TAHAIRNNIVLAMGDICS--SY---TAMTD-RYI 1008 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHh----h-hHHHHhcceeeeehhhHH--HH---HHHHH-Hhh
Confidence 4567888888899988 32 2344 89999999985 3 334444447777788887 33 22333 357
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCC--HHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGG--LEIVIDLLNSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~~~~~a~~~L~~l~ 167 (461)
|.+...|.++++-+++++...+.+|...+ +++..| +-.++-.+-+.+++++..|=..+..+.
T Consensus 1009 P~I~~~L~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1009 PMIAASLCDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999998888887533 333322 222333334556778887777777665
No 317
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.46 E-value=3.6e+02 Score=30.95 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=72.0
Q ss_pred HHhCCCChhHHHHHHHHHHHh-ccCcc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh-cCCHHHHH
Q 044999 269 ELLQGPDSTGKEISEDVFCIL-AVSEA-NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN-SGAIPILV 345 (461)
Q Consensus 269 ~ll~~~~~~~~~~a~~~L~~l-~~~~~-~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~L~ 345 (461)
.++++.++.++..+......+ ...+. .+++++..|+..+-+++..-...|+.+|..|+.. +...+.. ...+..++
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~~~~l~~fa~~l~giL 519 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--NPSELQPFATFLKGIL 519 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---HHHHHHTHHHHHGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHH
Confidence 346788899988888777766 43344 5667778888888777766667999999999953 2222322 23455566
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHH
Q 044999 346 NLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDN 399 (461)
Q Consensus 346 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 399 (461)
+++.+-+..=....-.+|+.++........-...+.--.+-+.+.+.++..+..
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 666665554445556677777762211111111121222333555666666654
No 318
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=3.4e+02 Score=30.86 Aligned_cols=200 Identities=13% Similarity=0.095 Sum_probs=123.9
Q ss_pred hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH-HHHHHcCCHHHHHHHhcC----CChHHHHHHH---
Q 044999 89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR-VIVARNGGLEIVIDLLNS----CNDGTRRYLL--- 160 (461)
Q Consensus 89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~----~~~~~~~~a~--- 160 (461)
.+..+.+.|.+..++..+++.++.++..+.+++.....+. ++. +.+.+.-....+..+.++ +++++-....
T Consensus 1431 ~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHL-e~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1431 IRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHL-ENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred cchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 3336778899999999999999999999977777555444 442 333333344445554443 2332222111
Q ss_pred HHHHHhhCChHH-----------HHHHHhcCCHHHHHHHHcCCCH---HHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 044999 161 EILSALALLREV-----------RRVLICLGGLRYLVEAVSFGSM---VSRERACQAIGLLAVTGRARRLLVELGVIPGL 226 (461)
Q Consensus 161 ~~L~~l~~~~~~-----------~~~~~~~~~l~~l~~~l~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L 226 (461)
.-...++..+.. ....++..++|.+-+++.+... ..|.+-...+...-...++.+.....+....+
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~ 1589 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETL 1589 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEe
Confidence 111223322211 1134444577777777765532 46778888888877777777777778888888
Q ss_pred HHhcccC--CHHHHHHHHHHHHHHhcCccc-hhhhhhcCCHHHHHHHhCCC--ChhHHHH-HHHHHHHh
Q 044999 227 VELFHIG--DWTTKLVAGNTLGVVAAHVEY-ITPVAEAGAIPLYAELLQGP--DSTGKEI-SEDVFCIL 289 (461)
Q Consensus 227 ~~ll~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~i~~L~~ll~~~--~~~~~~~-a~~~L~~l 289 (461)
+....++ +...+.....+|++-..-+.. +..+-..|....+..++.+. .+-.... ....+.++
T Consensus 1590 lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1590 LSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred ehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 8888765 455666777777776666444 44444568888999999877 3444443 44445554
No 319
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=55.74 E-value=1.5e+02 Score=29.43 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHH--hhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 13 NRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILAR--LLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 13 ~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~--~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
..++-.-.+.+..|...|-..|.++. +.+....+.+.+..... .-..... ..-++..|. ..|..|+.. ...
T Consensus 240 ~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~-~pa~~~lq~---kIL~~L~kS--~~A 313 (501)
T PF13001_consen 240 PPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGR-PPASPRLQE---KILSLLSKS--VIA 313 (501)
T ss_pred hheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCC-CCCCHHHHH---HHHHHHHHh--HHH
Confidence 33333334455677777777777777 53333333333333331 0000000 011233333 444445541 111
Q ss_pred HHHHHhcCCHHHHHhcCCCC--CHHHHHHHHHHH---HHHhccChhhH----HHHHHcCCHHHHHH----HhcCCChHHH
Q 044999 90 ATEIGQSGVINSVLRLFPQS--DDSFRTVLVKCL---RVFVTFGNENR----VIVARNGGLEIVID----LLNSCNDGTR 156 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l---~~l~~~~~~~~----~~~~~~g~i~~L~~----ll~~~~~~~~ 156 (461)
.-.-...+......+.+. +...+..+...+ .....+..... ..+...++.+.+-. -..+.+...|
T Consensus 314 --a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 314 --ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELR 391 (501)
T ss_pred --HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHH
Confidence 111223455555666666 445555555555 32232222211 22234445554410 0112355899
Q ss_pred HHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch
Q 044999 157 RYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR 212 (461)
Q Consensus 157 ~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 212 (461)
..+.++|+.++ ..+..- .-+.+.+..|+.-|..++++++...-.+|..++....
T Consensus 392 ~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 99999999999 444331 1234578888998988888999888888888865443
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.52 E-value=1.6e+02 Score=26.29 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhcCchh--------HHHHHhcCChHHHHHhcccCC----HHHHHHHHHHHHHHhcCccchhhhhhcC
Q 044999 195 VSRERACQAIGLLAVTGRA--------RRLLVELGVIPGLVELFHIGD----WTTKLVAGNTLGVVAAHVEYITPVAEAG 262 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~g 262 (461)
.....++..|..++..+.. +-.+.=.+.+|.++.-+.+++ .......+..|..++..... +
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~-------~ 149 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL-------P 149 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC-------c
Confidence 4455666777776654322 222333456777777777666 13444556778877743111 1
Q ss_pred CHHHHHHHhCCC-ChhHHHHHHHHHHHhc--cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcC
Q 044999 263 AIPLYAELLQGP-DSTGKEISEDVFCILA--VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG 339 (461)
Q Consensus 263 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~--~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 339 (461)
.+..+....... -.........+...+. ..++....+.-.++.+|..+.+.++...+.+|..+-...+.+.. ...+
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~d 228 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGAD 228 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchH
Confidence 233333333222 1222222223333332 23444555557788999999999999999999999876444433 5556
Q ss_pred CHHHHHHhhcCCC
Q 044999 340 AIPILVNLLRGEN 352 (461)
Q Consensus 340 ~i~~L~~ll~~~~ 352 (461)
.+..+.++++++.
T Consensus 229 lispllrlL~t~~ 241 (262)
T PF14225_consen 229 LISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHHhCCcc
Confidence 7889999998764
No 321
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.34 E-value=2e+02 Score=26.86 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=65.0
Q ss_pred CHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcc----------cCCHHHHHHH
Q 044999 181 GLRYLVEAVSFG-------SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH----------IGDWTTKLVA 241 (461)
Q Consensus 181 ~l~~l~~~l~~~-------~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a 241 (461)
.+|.++.++... +.......++++..|..++.. ..++++ .++.++.++- ..+..+|..|
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~--Lip~vltclv~~~l~~~~~~~~h~~LRd~A 288 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQ--LIPSVLTCLVAKQLCSRPPDDNHWALRDYA 288 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHH--HHHHHHHHhhhHhhcCCCCCchHHHHHHHH
Confidence 466677766543 456667778888888888776 334444 7777776663 2346899999
Q ss_pred HHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHh
Q 044999 242 GNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCIL 289 (461)
Q Consensus 242 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l 289 (461)
+..|..++..-.....-....++..+.+.+.++ ....+.-|+..|..|
T Consensus 289 A~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 289 ARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999987522211112333355666666544 233355555555554
No 322
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=52.33 E-value=2e+02 Score=26.86 Aligned_cols=150 Identities=16% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCC-cHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNL-TRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~-~~~~~~~a~~~L~~l~~~~ 85 (461)
....+..+.+.+.+.++..|..| |..|. ++.... .+|-++..+.......-+ +.......+.....|..
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~a---L~sL~tD~gl~~----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-- 246 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREA---LQSLRTDPGLQQ----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-- 246 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHH---HHHhccCCCchh----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc--
Confidence 34566777777777777777654 44555 443333 334444443320000222 34455557788888888
Q ss_pred CchhHHHHHhcCCHHHHHhcCC----------CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC-Ch-
Q 044999 86 DGALATEIGQSGVINSVLRLFP----------QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC-ND- 153 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~- 153 (461)
++...-...-+..++.++.++- .+.+..|..++..+..++..-... .--....++..+.+.+.+. .+
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHcCCCCCc
Confidence 6665555555667777776652 123567888888888776521110 0001122233555544433 23
Q ss_pred HHHHHHHHHHHHhh
Q 044999 154 GTRRYLLEILSALA 167 (461)
Q Consensus 154 ~~~~~a~~~L~~l~ 167 (461)
.....|+..|..+.
T Consensus 326 ~~~YGAi~GL~~lG 339 (343)
T cd08050 326 TTHYGAIVGLSALG 339 (343)
T ss_pred chhhHHHHHHHHhC
Confidence 34667777776654
No 323
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=50.30 E-value=74 Score=24.46 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=38.3
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh---hHHHHHHhhc
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA---TIPILARLLG 58 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~---~i~~l~~~l~ 58 (461)
...+.++.|.+-|++.++-|+.++++.|-.++ ++..+..+++ .|..+.+.=.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 46677888888899999999999999999999 3344444554 5555555443
No 324
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=3e+02 Score=28.16 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HH------HHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHh
Q 044999 179 LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RR------LLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 179 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~------~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 249 (461)
.+-++.+++-+++++++++..|+..+....+.... .. .+.. .+.+..+.+-+. ++..+.+.+..|.-|+
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~--~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA--DSNLKKWLADILSVLA 124 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc--CchhHhHHHHHHHHHh
Confidence 45689999999999999999999999887654432 11 1111 233333333332 3456777888888888
Q ss_pred cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY- 328 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~- 328 (461)
.....+....+....-....+=..++.-+|..|..+=............ ..+....+..++-..-.+
T Consensus 125 mt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~------------~~dl~~l~~~iV~f~mkHN 192 (878)
T KOG2005|consen 125 MTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPS------------KADLLDLVQEIVPFHMKHN 192 (878)
T ss_pred eeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccc------------hHHHHHHHHHHHHHHHhcc
Confidence 7744444332221111111111122333443333222111110000000 011111222222211111
Q ss_pred --CCchhHHhhcCCHHHHHHhhcCCC-----------------HH---HHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 044999 329 --KHSVPVIRNSGAIPILVNLLRGEN-----------------DE---VREKVSGAIAQLSYNEADRVALADAGAVPIMI 386 (461)
Q Consensus 329 --~~~~~~l~~~g~i~~L~~ll~~~~-----------------~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 386 (461)
.+..+.+.+-+.++.+.+.....+ |+ +.+.|..+-..+...++.-...+..+-.+.+.
T Consensus 193 AE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~ 272 (878)
T KOG2005|consen 193 AEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVK 272 (878)
T ss_pred chhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHH
Confidence 233344444444444444443222 22 44445555555555555555555556677777
Q ss_pred HhccC-CCHHHHHHHHHHHHHhcCCCcc--hHHHHHhhCCchH
Q 044999 387 ELLHD-ESEELRDNAAESLINFSEDPLQ--HERISEAIGIPSF 426 (461)
Q Consensus 387 ~ll~~-~~~~~~~~a~~~L~~l~~~~~~--~~~l~~~~~~~~~ 426 (461)
+...+ .++..+.+.+..|..--..-+- .+.+.++.+.+.+
T Consensus 273 ~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~L 315 (878)
T KOG2005|consen 273 EVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKL 315 (878)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccH
Confidence 77744 7888888888888755322222 3455555444444
No 325
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.54 E-value=86 Score=23.59 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=50.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhc------cCCCHHHHHHHHHHHHHhc
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELL------HDESEELRDNAAESLINFS 408 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll------~~~~~~~~~~a~~~L~~l~ 408 (461)
++..|.+-+.+.++.++..|+..|-.+.. ++.....+.+...+..+++.. ...+..++..+...+...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 45668888888899999999999999998 566777777766555555431 1247788888888776543
No 326
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.36 E-value=1.4e+02 Score=24.34 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=47.2
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C--CCchhHHHhhHHHHHH-hhccCCCCCCCcHHHHHH-HHHHHHHHHh
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-K--FAPQDILAATIPILAR-LLGENNFSGNLTRSIQQA-AAYCLKQIAS 83 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~--~~~~~~l~~~i~~l~~-~l~~~~~~~~~~~~~~~~-a~~~L~~l~~ 83 (461)
++..+.+.+.+.+++..+-..+++.+..+. + ...+.++.-.++.++. ++.+ ++.... |+. +..++..++.
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~----~~~~~~-~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILES----DNSSLW-QKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCcHH-HHHHHHHHHHHHHh
Confidence 455577777777778888888999988888 2 2233333336666665 6665 332233 555 9999999998
Q ss_pred c
Q 044999 84 Q 84 (461)
Q Consensus 84 ~ 84 (461)
+
T Consensus 147 ~ 147 (168)
T PF12783_consen 147 D 147 (168)
T ss_pred C
Confidence 3
No 327
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.28 E-value=3.1e+02 Score=28.10 Aligned_cols=261 Identities=12% Similarity=0.104 Sum_probs=139.9
Q ss_pred HHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccC
Q 044999 50 IPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 50 i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~ 128 (461)
+..+.+-|.. + .|+..+.+|-.+|..++. ++++.... .-++. ...+.-+..|+.++.++....
T Consensus 7 Le~lCk~LY~----s-~D~~~R~~AE~~L~e~s~--speclskC---------qlll~~gs~pYs~mlAst~L~Klvs~~ 70 (1082)
T KOG1410|consen 7 LESLCKDLYE----S-TDPTARHRAEKALAELSE--SPECLSKC---------QLLLERGSYPYSQMLASTCLMKLVSRK 70 (1082)
T ss_pred HHHHHHHHHh----c-CCHHHHHHHHHHHHHHcc--CHHHHHHH---------HHHHHcCCCchHHHHHHHHHHHHHcCC
Confidence 3445555553 3 456666669999999998 54433222 11222 344555778888888777643
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChH----HHHHHHHHHHHhhC---ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDG----TRRYLLEILSALAL---LREVRRVLICLGGLRYLVEAVSFGSMVSRERAC 201 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~----~~~~a~~~L~~l~~---~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~ 201 (461)
. .-....+.++-..+++.+....|. +...-+..++.+.. .+..+....-.+.+..+.++++.++.+-...+.
T Consensus 71 t-~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv 149 (1082)
T KOG1410|consen 71 T-PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGV 149 (1082)
T ss_pred C-CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHH
Confidence 2 111222223345678888776553 33444455555552 333444444456788899999998888777788
Q ss_pred HHHHHhhcC--------chh-HHH----HHhcC---ChHHHHHhcccC-----CHH----HHHHHHHHHH-HHhcC----
Q 044999 202 QAIGLLAVT--------GRA-RRL----LVELG---VIPGLVELFHIG-----DWT----TKLVAGNTLG-VVAAH---- 251 (461)
Q Consensus 202 ~~L~~l~~~--------~~~-~~~----~~~~~---~i~~L~~ll~~~-----~~~----~~~~a~~~L~-~l~~~---- 251 (461)
.+|..+... +.. .+. +.+.. ++..-..+++.. +.+ ....++..-. .+..+
T Consensus 150 ~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 150 QILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 888776531 111 111 22211 122222233211 122 2222221111 11110
Q ss_pred --c----c---------chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc------CcccHHHHH----HHHHHH
Q 044999 252 --V----E---------YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV------SEANANAIA----EHLVRI 306 (461)
Q Consensus 252 --~----~---------~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~------~~~~~~~i~----~~l~~l 306 (461)
+ + -|..+.+...+..+.++..+-.++..+.++.+|..++. ++..+.... +.+..+
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 1 14455566678888888888899999999999988854 333344433 444455
Q ss_pred hccC----CHHHHHHHHHHHHHhhC
Q 044999 307 LREG----DNEANAAAADVLWDLAG 327 (461)
Q Consensus 307 l~~~----~~~~~~~a~~~L~~l~~ 327 (461)
+..+ +|..-..-|+.|+.+-.
T Consensus 310 l~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHHHh
Confidence 5433 44444455555555543
No 328
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.76 E-value=25 Score=32.31 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=50.6
Q ss_pred HHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhcCCC-cchHHHH
Q 044999 359 VSGAIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFSEDP-LQHERIS 418 (461)
Q Consensus 359 a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~ 418 (461)
..+.+++||. +++.+..+.+.||++.++.-. .+.+|-+++....++.+|..+. ++++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 6678999999 999999999999999998865 5679999999999999998765 4554443
No 329
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.67 E-value=1.7e+02 Score=24.47 Aligned_cols=74 Identities=14% Similarity=-0.052 Sum_probs=51.3
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC--LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA 213 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 213 (461)
..++.+++-+...+...+..|...+..+... .....++- ...+..+-..|.+.++++...++.+|..|....+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3577788877777777777777777777633 12222222 23566677788889999999999999999655544
No 330
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=47.19 E-value=78 Score=33.54 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC
Q 044999 195 VSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ 272 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~ 272 (461)
-++..+.-++++++-.++. .+. .+|.|++-|.. ....++-..+-+++-+|.+- ...-...+|.+...|.
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHhc
Confidence 4577888888888776655 221 46777777763 34445555555555555431 1112234788999999
Q ss_pred CCChhHHHHHHHHHHHhccCccc
Q 044999 273 GPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 273 ~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
++++-+|+.+...|.+|-+.+-.
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~v 1039 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIV 1039 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998665533
No 331
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.97 E-value=4.7e+02 Score=29.50 Aligned_cols=215 Identities=14% Similarity=0.124 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-------cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcC
Q 044999 191 FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-------IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAG 262 (461)
Q Consensus 191 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g 262 (461)
.+..+++...+.++.++.......-. .| .+...++++ .....+...+..+|+-++.+ -..-..=.-.+
T Consensus 853 ~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 33457777778888887654433211 12 455555544 12345666666677776665 11111111123
Q ss_pred CHHHHHHHhCCC-ChhHHHHHHHHHHHhc---------cCcccH---------------HHHH--------HHHHHHhcc
Q 044999 263 AIPLYAELLQGP-DSTGKEISEDVFCILA---------VSEANA---------------NAIA--------EHLVRILRE 309 (461)
Q Consensus 263 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~---------~~~~~~---------------~~i~--------~~l~~ll~~ 309 (461)
.++.+....+.. |..+--.|...+.+++ ..++.. .... ..|.++..+
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 455555544322 4444444554444432 111111 1111 444445556
Q ss_pred CCHHHHHHHHHHHHHhhCCC--CchhHHhhcCCHHHHHHhhcCC---------CHHHH----HHHHHHHHHhcC-ChhhH
Q 044999 310 GDNEANAAAADVLWDLAGYK--HSVPVIRNSGAIPILVNLLRGE---------NDEVR----EKVSGAIAQLSY-NEADR 373 (461)
Q Consensus 310 ~~~~~~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~L~~ll~~~---------~~~v~----~~a~~~L~~l~~-~~~~~ 373 (461)
.-++||..|++++..+.... .........-....++.+|... ..+++ +..+.+|..+++ .+++.
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 67899999999999887432 2223233333455566666521 12332 245677788888 77777
Q ss_pred HHHHhCCCh--------HHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 374 VALADAGAV--------PIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 374 ~~~~~~~~i--------~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
..+...+++ ..+.++..+.++++...+..++..+..
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 777655432 333344456889999988888877653
No 332
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=46.50 E-value=80 Score=20.53 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=34.9
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCCC
Q 044999 363 IAQLSYNEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 363 L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 411 (461)
|..||.....|..+.+.|+-+.+-.+-. .++++++..+-.++.-|..+.
T Consensus 2 LllL~~T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE 51 (58)
T PF04064_consen 2 LLLLCATREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDE 51 (58)
T ss_pred HhHHhccHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 5667777888999999986666655543 367888887777666665543
No 333
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=46.22 E-value=2.7e+02 Score=26.44 Aligned_cols=250 Identities=11% Similarity=0.016 Sum_probs=127.4
Q ss_pred ChHHHHHHHHHHHHhhCChHHHHHHHhcC---CHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 044999 152 NDGTRRYLLEILSALALLREVRRVLICLG---GLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRARRLLVELGVIPGL 226 (461)
Q Consensus 152 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L 226 (461)
+..+...|++++..+..+++....+-+.. .+...+..+.++ +..+....+++|..--..+. +.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHH
Confidence 44777899999999888877766554432 455566666555 44666666666665433332 2233344444
Q ss_pred HHhcc-----cCCHHHHHHHHHHHHHHhcCccchhhhhhc--CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHH
Q 044999 227 VELFH-----IGDWTTKLVAGNTLGVVAAHVEYITPVAEA--GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAI 299 (461)
Q Consensus 227 ~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i 299 (461)
+..+. -++..+....+.++.++... .+..+.++ -.++.++..+-+....++..|...+..+...-.....+
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~ 212 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQ--FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKEL 212 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHH
Confidence 44443 23456667777788887764 33334433 24667777666667777777666655553211111111
Q ss_pred H---------------------HHHHHHhccC-CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999 300 A---------------------EHLVRILREG-DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVRE 357 (461)
Q Consensus 300 ~---------------------~~l~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~ 357 (461)
. +.+..++.+. +.......-.++..|.+.+.....-.-...+...-..++++++.+|.
T Consensus 213 s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~ 292 (372)
T PF12231_consen 213 SKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI 292 (372)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence 1 3355555552 22211122222222222221100001112344444456778888888
Q ss_pred HHHHHHHHhcC----ChhhHHHHHhCCChHHHHHhcc-CCCH----HHHHHHHHHHHHhc
Q 044999 358 KVSGAIAQLSY----NEADRVALADAGAVPIMIELLH-DESE----ELRDNAAESLINFS 408 (461)
Q Consensus 358 ~a~~~L~~l~~----~~~~~~~~~~~~~i~~L~~ll~-~~~~----~~~~~a~~~L~~l~ 408 (461)
.|..+=..+.. ++.......+. ...++...++ ...+ +++..+...++++.
T Consensus 293 ~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 293 QAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 88755554444 22222222222 1222333332 2233 66777777777764
No 334
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.08 E-value=1.3e+02 Score=22.68 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=48.8
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHc------CCCHHHHHHHHHHHHHh
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVS------FGSMVSRERACQAIGLL 207 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~------~~~~~~~~~a~~~L~~l 207 (461)
++..|.+-+.+.++.+...|+.+|-.+. .++.....+.....+..++.+.. ..+..+|..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3556777778889999999999999998 45677777777766666655311 12567888887776554
No 335
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=45.61 E-value=3.1e+02 Score=27.04 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=79.8
Q ss_pred CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
|..||.-.+.+|+.+ +. .++++..+...-..-+ +.++...+.. ..|+++.-|.. . ..++-...+.-
T Consensus 192 PPVNWaalLsPLMRl-nf-GeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~------~---tk~~L~~Sl~~ 260 (589)
T PF11229_consen 192 PPVNWAALLSPLMRL-NF-GEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV------N---TKKYLFESLSL 260 (589)
T ss_pred CCccHHHHhhHHHhc-cc-cHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH------H---HHHHHHHHHHH
Confidence 788999999999997 33 5677776766555555 5655555554 77777777764 1 34444444444
Q ss_pred HHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHH--cCCHHHHHHHhcCC----ChH
Q 044999 81 IASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVAR--NGGLEIVIDLLNSC----NDG 154 (461)
Q Consensus 81 l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~----~~~ 154 (461)
....-.++-...+.+.-+++.+-..-+-.+++.+..+...+..-.. .+.-...... ......+++++-+. +-+
T Consensus 261 wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK-lP~P~~h~Ws~Lc~ttekIF~lLPn~i~~~eve 339 (589)
T PF11229_consen 261 WMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK-LPSPAQHCWSLLCETTEKIFDLLPNKIQRNEVE 339 (589)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHHHhCcccccHHHHH
Confidence 4443123333344443333433333334566666666666653222 1111111111 23355566655222 223
Q ss_pred HHHHHHHHHHHhhC
Q 044999 155 TRRYLLEILSALAL 168 (461)
Q Consensus 155 ~~~~a~~~L~~l~~ 168 (461)
.-...+++|..++.
T Consensus 340 LYi~vAkCLSEMtd 353 (589)
T PF11229_consen 340 LYIGVAKCLSEMTD 353 (589)
T ss_pred HHHHHHHHHhhcCH
Confidence 44445566666553
No 336
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.00 E-value=59 Score=25.91 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
+..|++++.+.+.++...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 77888888888888888888887765
No 337
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=44.63 E-value=81 Score=26.87 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=42.5
Q ss_pred hhHHHHHhcCCHHHHHhcCCCC---C---------------HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999 88 ALATEIGQSGVINSVLRLFPQS---D---------------DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~---~---------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 149 (461)
..+..+...|++..++++++.+ . ..+...+...|..++..+.+++..+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 3455556666666666555421 1 2445666677778898998998888774 443344333
Q ss_pred CCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999 150 SCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV 209 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 209 (461)
......-..+..++..+. .+.+....+.+.. +..++.++..... +..-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr--~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGR--QPRYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCC--ChHHHHHHhhhcc
Confidence 322222235666677666 4555555555443 7888888876332 2233444444443
No 338
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=44.57 E-value=3.7e+02 Score=28.31 Aligned_cols=110 Identities=17% Similarity=0.044 Sum_probs=68.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcC
Q 044999 144 VIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELG 221 (461)
Q Consensus 144 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~ 221 (461)
+.+.+.++++......+.++..+..-......- ....++.-..-.+..-..+.....++|..++...+. ...+.+.+
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~ 524 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPD 524 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcc
Confidence 444445555566666666666665222111100 111112222222222235667788899999988776 55666688
Q ss_pred ChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
....++.++-+++.++...|...|..... .+.|
T Consensus 525 ~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R 557 (727)
T PF12726_consen 525 AAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGR 557 (727)
T ss_pred hhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcH
Confidence 99999999999999999999999998875 3443
No 339
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=44.26 E-value=3.4e+02 Score=27.05 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=98.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC--C---------CChhHHHHHHHHHHHhccCcccHHHH
Q 044999 231 HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ--G---------PDSTGKEISEDVFCILAVSEANANAI 299 (461)
Q Consensus 231 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~--~---------~~~~~~~~a~~~L~~l~~~~~~~~~i 299 (461)
.+.+.++...|-..|..+... +-+..++..|..+.. . .++.+|...+..|+.=......-..+
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~ 320 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNI 320 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccH
Confidence 355667777777788777765 222344677777765 2 24566665555555421111111112
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHH---HHhhCC-CCch----hHHhhcCCHHHHHH----hhcCCCHHHHHHHHHHHHH
Q 044999 300 AEHLVRILREG--DNEANAAAADVL---WDLAGY-KHSV----PVIRNSGAIPILVN----LLRGENDEVREKVSGAIAQ 365 (461)
Q Consensus 300 ~~~l~~ll~~~--~~~~~~~a~~~L---~~l~~~-~~~~----~~l~~~g~i~~L~~----ll~~~~~~v~~~a~~~L~~ 365 (461)
...+...+.+. +..++..++..+ .....+ +... ...+..++.|.+-. --...+...|..+-.+|+.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 23344444444 566777777777 444432 2211 11223344444410 0112356688899999999
Q ss_pred hcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 366 LSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 366 l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
|+. .+..- ..+.+.+..|.+-+.++.++++...-.+|..++..
T Consensus 401 L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 401 LAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999 55421 12345677788878888999999999999988644
No 340
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=43.96 E-value=1.4e+02 Score=27.66 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHhccC---CCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchH
Q 044999 355 VREKVSGAIAQLSYNEADRVALADAG--AVPIMIELLHD---ESEELRDNAAESLINFSEDPLQHERISEAIGIPSF 426 (461)
Q Consensus 355 v~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~ 426 (461)
+|..|+.++..+...+.....+...+ .+..|+++++. -...++..|..+|..++.+......+..+.|.+.-
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~ 314 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVS 314 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCC
Confidence 45555555555555777778888777 89999999954 36789999999999999877655666666655543
No 341
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.73 E-value=1.8e+02 Score=27.49 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=76.3
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhh
Q 044999 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVA 259 (461)
Q Consensus 181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~ 259 (461)
.+..++..+.+.+..+|..|+..+..+-.+.+......-..+++.+..++.+.+..+|......+-++... ........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 46667888899999999999999988777655533333345788888888888888888888888776554 11111111
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
-.-+++.+...+..-.++++.-++..|.-+.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll 169 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLL 169 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHH
Confidence 1123444555566668899998888888774
No 342
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=43.66 E-value=1.5e+02 Score=25.13 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=45.9
Q ss_pred hhHHHHHHcCCHHHHHHHhcCC---C---------------hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHc
Q 044999 130 ENRVIVARNGGLEIVIDLLNSC---N---------------DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVS 190 (461)
Q Consensus 130 ~~~~~~~~~g~i~~L~~ll~~~---~---------------~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~ 190 (461)
..+..+.+.|++..+++++..+ . ..+...+...|..++ .+.+++..+.+. ++.++..+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 4567777888888888877531 1 256678889999999 677777777664 333333333
Q ss_pred CCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 191 FGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 191 ~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
......-..+..++..+-.++.. ...+.+. .+..++.++....... .-+..|..++.
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~~gr~~--~~L~~L~~lc~ 169 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRKHGRQP--RYLDFLSSLCV 169 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHHcCCCh--HHHHHHhhhcc
Confidence 32222223456666666665555 5555544 3888888887633221 23334444444
No 343
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.56 E-value=85 Score=33.05 Aligned_cols=177 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-----CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-----ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRV 123 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 123 (461)
.+++++.++. .+.++++|..|...|+.+... |+......+.....+..|+..+-.+... ....+..+..
T Consensus 191 li~kll~ll~-----ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s-~s~lVs~i~v 264 (838)
T KOG2073|consen 191 LIPKLLELLN-----PSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTS-LSVLVSGIIV 264 (838)
T ss_pred HHHHHHHHhC-----CccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcc-hhhHHHHHHH
Q ss_pred HhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Q 044999 124 FVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQ 202 (461)
Q Consensus 124 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~ 202 (461)
+......-+..+...-....+..-....++.+....+.++.... .....-..--..+.++.=...+..+=...|...++
T Consensus 265 lI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~e 344 (838)
T KOG2073|consen 265 LISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVE 344 (838)
T ss_pred HHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHH
Q ss_pred HHHHhhcCchh--HHHHHhcCChHHHHHhcc
Q 044999 203 AIGLLAVTGRA--RRLLVELGVIPGLVELFH 231 (461)
Q Consensus 203 ~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~ 231 (461)
.+..+...... ...+...+.+..++.++.
T Consensus 345 liaelL~~~~~~l~~el~~~~~~~r~lD~f~ 375 (838)
T KOG2073|consen 345 LIAELLHCSNMTLLNELRAEGIAERLLDLFF 375 (838)
T ss_pred HHHHHhccCcHHHHhHHhhhhhHHHHHHHHH
No 344
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=43.35 E-value=5.1e+02 Score=28.93 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=128.0
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHhhHHHHHHh--hcc-C-CCCCCCcHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS----KFAPQDILAATIPILARL--LGE-N-NFSGNLTRSIQQAAAYCLK 79 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~~i~~l~~~--l~~-~-~~~~~~~~~~~~~a~~~L~ 79 (461)
....++.|+..+-++.-.+|.-++.++..+. ....+..+...+-.++.. |.. + -++++--..+...++++|.
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 4556677777777888889999999988887 233333333322222111 111 0 0001111235555889999
Q ss_pred HHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH
Q 044999 80 QIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY 158 (461)
Q Consensus 80 ~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 158 (461)
.+....++.... ..+..+.++++..+++++...+..+. +++...+... ..-..+++..++-|.+++.+++..
T Consensus 155 ~~l~~~~~s~~~-----~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~--~~~~~vl~~~i~~L~ds~ddv~~~ 227 (1549)
T KOG0392|consen 155 AYLKHMDESLIK-----ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF--QLLNLVLDFVIEGLEDSDDDVRSV 227 (1549)
T ss_pred HHHHhhhhHhhH-----HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhcchHHHHH
Confidence 888742222221 23567778888777776666665555 2221110111 112235667777888899999999
Q ss_pred HHHHHHHhhCChHH--HHHHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHhhcCchhHHH---H-HhcCChHHHHHhc
Q 044999 159 LLEILSALALLREV--RRVLICLGGLRYLVEAVSFGSM--VSRERACQAIGLLAVTGRARRL---L-VELGVIPGLVELF 230 (461)
Q Consensus 159 a~~~L~~l~~~~~~--~~~~~~~~~l~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~---~-~~~~~i~~L~~ll 230 (461)
|...+.-....... .+.+. ..+..+..++..-+. .-.......+..++...+.... . .+.|.+|.+...+
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l 305 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFL 305 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHH
Confidence 99988877633311 11111 123333333322221 1111222223333333322111 1 1257889999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcC
Q 044999 231 HIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 231 ~~~~~~~~~~a~~~L~~l~~~ 251 (461)
++.-..++..++..+..+...
T Consensus 306 ~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 306 RHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888766
No 345
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.72 E-value=4.2e+02 Score=27.70 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=71.7
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHH
Q 044999 97 GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRV 175 (461)
Q Consensus 97 ~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~ 175 (461)
.+++.|..+-.+.=+.++.++...+..+....++.-..+ +..++.-+++++..+...|...|.++. .++..+..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 357777777777788899999999997776666654443 445788888888899999999998888 55555544
Q ss_pred HHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCc
Q 044999 176 LICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 176 ~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~ 211 (461)
+++. +.+++=.+ +...+.+|+.+|..+...+
T Consensus 379 vi~E-----Ier~~FRpn~~~ra~Yyav~fLnQ~~Lsh 411 (988)
T KOG2038|consen 379 VIDE-----IERLAFRPNVSERAHYYAVIFLNQMKLSH 411 (988)
T ss_pred hHHH-----HHHHHcccCccccceeehhhhhhhhHhcc
Confidence 4332 33443333 4455667777776654443
No 346
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=42.34 E-value=22 Score=34.32 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=49.1
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCchhHHh-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 044999 306 ILREGDNEANAAAADVLWDLAGYKHSVPVIR-NSGAIPILVNLLRGENDEVREKVSGAIAQLSYN 369 (461)
Q Consensus 306 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 369 (461)
.....+++++..|..++++++.+-+++.... ....-..+++++..+.+++-+.+..++.-+..+
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhh
Confidence 3345689999999999999998866666544 445667788888888888888888877777654
No 347
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=42.26 E-value=3.5e+02 Score=27.31 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=80.6
Q ss_pred cccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------H
Q 044999 230 FHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------E 301 (461)
Q Consensus 230 l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~ 301 (461)
..+-++.++..+...|+--... |+. +.+-.++...--.|.+.+..+|.....++..|....+....+. .
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3345566666666666554443 222 2222344555556777788999999999999977666655333 8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 302 HLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 302 ~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
.++++++.+..-+|..+++.+..+....- .+...+-.+..++-+..|+-+......+.++|.
T Consensus 361 rILE~~r~D~d~VRi~sik~l~~lr~lg~-----L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 361 RILEFLRTDSDCVRICSIKSLCYLRILGV-----LSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhcc-----cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 88899888866699999888888763210 111123334445555566645555555666665
No 348
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=42.23 E-value=2.3e+02 Score=24.61 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCC-------------H-----HHHHHHHHHHHHhhcCchhH
Q 044999 153 DGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGS-------------M-----VSRERACQAIGLLAVTGRAR 214 (461)
Q Consensus 153 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------~-----~~~~~a~~~L~~l~~~~~~~ 214 (461)
......++..+..+...++....+.+.+.++.+.+.|..-+ + .+...=...|+.++.+....
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 45566778888888888887777778888888887775431 1 12334456788998888888
Q ss_pred HHHHhcCChHHHHHhcccCCH-HHHHHHHHHHHHHhcCccchhhhhhcCCHH-HHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 215 RLLVELGVIPGLVELFHIGDW-TTKLVAGNTLGVVAAHVEYITPVAEAGAIP-LYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 215 ~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
+.+-+.+++..+..++...+. +.... .+.++-...+ |-.. .|-..|.+++..+|..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~--------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVD--------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCc--------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 888899999999999986533 22222 4455422211 1122 3556678888999999998887653
No 349
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=41.90 E-value=3.3e+02 Score=26.26 Aligned_cols=185 Identities=15% Similarity=0.043 Sum_probs=96.1
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
-.+.+..|+.++.|+|+.-|......+-++. ....|..+++ ....+.+.+.. ...+--....+..+..+..+
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e-----~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYE-----TERHNGIAELLEILGSIING 205 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHT-----TS--STHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-----cccccCHHHHHHHHHHHHhc
Confidence 4567788999999999999999988888888 6677777777 66677778774 22233444466777777663
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCH-HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDD-SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEIL 163 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 163 (461)
-....++.. ..=....++-+.+...- ........++..+...++..-..+. ..+++..-..++.-...-+.-+
T Consensus 206 f~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~el 279 (409)
T PF01603_consen 206 FAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNEL 279 (409)
T ss_dssp --SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHHH
T ss_pred cCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCchhHHHHHHHH
Confidence 111111111 00012334445444432 2245666666666665554433332 2344444344443333444444
Q ss_pred HHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Q 044999 164 SALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQA 203 (461)
Q Consensus 164 ~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~ 203 (461)
..+.. .++..-.-+.......+...+++.+..+-+.|+..
T Consensus 280 ~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~ 320 (409)
T PF01603_consen 280 EEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYF 320 (409)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGG
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44442 11111111112245555666666666666666643
No 350
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.46 E-value=1.8e+02 Score=23.06 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=51.8
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHH-HHHHHcC---CCHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLN-SCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRY-LVEAVSF---GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~-~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~-l~~~l~~---~~~~~~~~a~~~L~~l~~ 209 (461)
+..+.+=+. +.++.++..|+..|-.+.. .......+...+++.. |+.++.. .+..++...+..+...+.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 445555555 4688899999999988883 4567788888889987 8999863 245888888888877654
No 351
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.81 E-value=4.6e+02 Score=27.63 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=83.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHH-h
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALA-D 378 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-~ 378 (461)
+.+...+.++++..-...+.++.+++.-......- ...-.+.-..-....-..+......+|.+++. +++....+. +
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 77777777888888888888888887532111000 11122222222222223466678889999999 666555554 5
Q ss_pred CCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcch---HHHHHhhCCchHHhHHHHH
Q 044999 379 AGAVPIMIELLHDESEELRDNAAESLINFSEDPLQH---ERISEAIGIPSFQSMQSRL 433 (461)
Q Consensus 379 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~l~~~~~~~~~~~l~~~l 433 (461)
.+....++.++-++++++.+.|...|........-. ..+.+..-.+++..+...+
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l 580 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSL 580 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 788999999999999999999999999998644322 3333444444444444333
No 352
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.54 E-value=3.2e+02 Score=28.38 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 044999 311 DNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLR-GENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 311 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 368 (461)
.+..|..++..|+.+.. .+.-...+.++..++.|+..|. +.+..+...|+.+|..|--
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 45678899999999995 5778888899999999999987 4466677777777776654
No 353
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=40.29 E-value=1.4e+02 Score=21.54 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhhc-C-CCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999 23 SEALQVKALTKLARVS-K-FAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS 83 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la-~-~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~ 83 (461)
+-.+|..|+..+..++ . ......+.. ++..+.+.+.. .+.....+--|+..|..+..
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d----~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLD----PKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999 3 333334444 88899988886 33333344448888888843
No 354
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=40.28 E-value=3.3e+02 Score=25.82 Aligned_cols=299 Identities=10% Similarity=0.073 Sum_probs=142.9
Q ss_pred hcCCHHHHHHHHHHHHhhc----CCCchhHHHhhHHHHHHhhccC----CCCCC-CcHHHHHHHHHHHHHHHhcCCchhH
Q 044999 20 VSGSEALQVKALTKLARVS----KFAPQDILAATIPILARLLGEN----NFSGN-LTRSIQQAAAYCLKQIASQADGALA 90 (461)
Q Consensus 20 ~~~~~~~~~~a~~~l~~la----~~~~~~~l~~~i~~l~~~l~~~----~~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 90 (461)
..++..-|.-|-..|.+.- +......+.+-++.+++.++.. .-.++ .|.....+|..+|..+.. ++...
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~--~~~i~ 80 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY--HPEIV 80 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc--cHHHH
Confidence 3445555566655555444 2333444444444444433320 01112 234455568899998887 55544
Q ss_pred HHHHhcC---CHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc-----CCChHHHHHHHHH
Q 044999 91 TEIGQSG---VINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-----SCNDGTRRYLLEI 162 (461)
Q Consensus 91 ~~~~~~~---~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~ 162 (461)
..+.+.- .+...+..+.+++.. +..+...+.-++..+-. ..+.....+..++..+. -+...+....+.+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~--~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFS--PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCC--CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 4443322 345555566544432 33333333333332211 11333344555555442 2344677888888
Q ss_pred HHHhhC-ChHHHHHHHh-c-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh----HHHHH---hc----C-----Ch
Q 044999 163 LSALAL-LREVRRVLIC-L-GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA----RRLLV---EL----G-----VI 223 (461)
Q Consensus 163 L~~l~~-~~~~~~~~~~-~-~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~---~~----~-----~i 223 (461)
+.++.. .+.. +.+ . .-++.++..+-+....+|..|..++..+...-+. .+.+. +. + ..
T Consensus 158 ~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 158 YKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 888873 3332 222 2 2566676666666777777766666555322111 11111 11 1 22
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc--C-c-c-cHH
Q 044999 224 PGLVELFHI-GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV--S-E-A-NAN 297 (461)
Q Consensus 224 ~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~-~-~-~~~ 297 (461)
+.|..++.+ ++.......-.++..+...+.....-.-...+...-..++++++.++..|..+...+.. + + . ...
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k 314 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPK 314 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 335555555 33222222212222222221100000011224445556788899999999988777632 1 1 1 122
Q ss_pred HHH---HHHHHHhccC-CH----HHHHHHHHHHHHhh
Q 044999 298 AIA---EHLVRILREG-DN----EANAAAADVLWDLA 326 (461)
Q Consensus 298 ~i~---~~l~~ll~~~-~~----~~~~~a~~~L~~l~ 326 (461)
.+. .++...++.. .+ +++..++..++++.
T Consensus 315 ~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 315 RLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 222 5555555443 33 67778877777775
No 355
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.83 E-value=2.2e+02 Score=26.87 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCC-hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHH
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALL-REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLV 218 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 218 (461)
+..++..+++.+.++|..|+.-+..+..+ +.... ..-..+++.+.....+.+..+|......+-++...... .....
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 55677788999999999999999888743 33332 22233577777777788888888888888775444332 21111
Q ss_pred hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
..=..+.+...+.+..++++..++..|.-+...
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~ 171 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLER 171 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 111334455556677889999988888877654
No 356
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.09 E-value=1.9e+02 Score=22.60 Aligned_cols=118 Identities=20% Similarity=0.261 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc---C-c-----cc-HHHHH----
Q 044999 237 TKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV---S-E-----AN-ANAIA---- 300 (461)
Q Consensus 237 ~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~-~-----~~-~~~i~---- 300 (461)
++...+.++..++.. ++.=. .+++.++.++.+ ++......+.+|..+.. . . .. +..+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp-----~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWP-----DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTST-----THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCc-----hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 455556666666654 12211 346777777766 35555556666655521 1 0 01 11111
Q ss_pred -------HHHHHHhccCC----HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999 301 -------EHLVRILREGD----NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363 (461)
Q Consensus 301 -------~~l~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L 363 (461)
+.+.+.+.... ++....++.++...... -....+.+.+.++.+.+++.++ .++..|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 44444443332 78888999999998873 3445556677999999999554 4577777664
No 357
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=38.39 E-value=44 Score=17.52 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhc
Q 044999 26 LQVKALTKLARVSKFAPQDILAATIPILARLLG 58 (461)
Q Consensus 26 ~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~ 58 (461)
||..|+.+|+.+.+ .++++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhc
Confidence 57778888887763 226677766654
No 358
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=38.13 E-value=2.2e+02 Score=23.17 Aligned_cols=81 Identities=17% Similarity=0.091 Sum_probs=51.6
Q ss_pred HcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh-cC-CHHHHHH-HHcCCC--HHHHHHHHHHHHHhhcCc
Q 044999 137 RNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC-LG-GLRYLVE-AVSFGS--MVSRERACQAIGLLAVTG 211 (461)
Q Consensus 137 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~-~l~~l~~-~l~~~~--~~~~~~a~~~L~~l~~~~ 211 (461)
+....+.+++.+.+.++.+-..+++++..+... .+..+.. .+ .+..++. ++.+++ ...|..++.++..++..+
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 344566677766666688888899998888722 2222221 11 3444444 566553 467888999999999887
Q ss_pred hh-HHHHHh
Q 044999 212 RA-RRLLVE 219 (461)
Q Consensus 212 ~~-~~~~~~ 219 (461)
.. ...+.+
T Consensus 149 ~~l~~lf~N 157 (168)
T PF12783_consen 149 QFLVDLFVN 157 (168)
T ss_pred hHHHHHHHH
Confidence 76 444444
No 359
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.93 E-value=3.5e+02 Score=28.09 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC
Q 044999 193 SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 193 ~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 251 (461)
.+..|..++..|+.+....+. -..+.+...++.|+..|. +.+..+...|+.+|..|--.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 346688999999999988777 667888899999999888 55667777777777766543
No 360
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.25 E-value=3.8e+02 Score=25.68 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=63.8
Q ss_pred hccCCHHHHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcC--Ch--hhHH
Q 044999 307 LREGDNEANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSY--NE--ADRV 374 (461)
Q Consensus 307 l~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~--~~--~~~~ 374 (461)
+++....-...|+.+|-.+..+ ....+.+.+..++..|++++.- .+..++...+..|..... .+ ..+.
T Consensus 54 iqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~Kikd 133 (594)
T KOG1086|consen 54 IQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKD 133 (594)
T ss_pred cCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccchHHH
Confidence 3333333233444444444422 3445555566667777777652 235677777777776555 21 2222
Q ss_pred H---HHhCCCh-------------------------------HHHHHhccCCCHHHHHHHHHHHHHhcCCCcch
Q 044999 375 A---LADAGAV-------------------------------PIMIELLHDESEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 375 ~---~~~~~~i-------------------------------~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
. +...|+| ..|.+++++.+|+-.+.|-..+.++....+.+
T Consensus 134 aYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k 207 (594)
T KOG1086|consen 134 AYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHK 207 (594)
T ss_pred HHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222322 34677889999999999999999999887654
No 361
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.50 E-value=5.4e+02 Score=28.17 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=85.2
Q ss_pred ccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-------HHH
Q 044999 231 HIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA-------EHL 303 (461)
Q Consensus 231 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-------~~l 303 (461)
++-.+++|..++..|+-.... .-..+.+...+.-+--.|.+.+.+||..++.+|..|...++....+. ..+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~--yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKS--YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHh--ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 456788888877777665543 22334444545555556788899999999999999987766544443 888
Q ss_pred HHHh-ccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999 304 VRIL-REGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ 365 (461)
Q Consensus 304 ~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 365 (461)
+.+. +..+..|+...+..+..+.... +....-+..+..++-+.+++++..|...+..
T Consensus 375 VeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8888 4556777776665555443221 1222345667778888888888887765553
No 362
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=35.20 E-value=5.2e+02 Score=26.59 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCcccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHH
Q 044999 281 ISEDVFCILAVSEANANAIA-EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREK 358 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~~~~i~-~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~ 358 (461)
.|+--++-++..++.-.++. ..+-+++..+.+.+|...=-+++-++ ++|. .+++..|-++.++.+.++...
T Consensus 622 ~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq-------~~vlDtLsk~shd~D~eva~n 694 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ-------VNVLDTLSKFSHDGDLEVAMN 694 (878)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc-------chHHHHHHHhccCcchHHHHH
Confidence 45555566677777766666 88888999999999999888999888 4452 356778999999999999988
Q ss_pred HHHHHHHhcCChh
Q 044999 359 VSGAIAQLSYNEA 371 (461)
Q Consensus 359 a~~~L~~l~~~~~ 371 (461)
++.+++-+.....
T Consensus 695 aIfamGLiGAGTn 707 (878)
T KOG2005|consen 695 AIFAMGLIGAGTN 707 (878)
T ss_pred HHHHhccccCCcc
Confidence 8888877766433
No 363
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.35 E-value=1.3e+02 Score=31.95 Aligned_cols=93 Identities=16% Similarity=0.066 Sum_probs=63.2
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHh---hcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccch
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLL---AVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYI 255 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~ 255 (461)
.++..-..+|.+.+-.+|..++.++... -...++.-.-.-...++.++..+...++-+...|+.++.+++.. .+.-
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 3566667788888989999999988652 23333322112234799999999999999999999999999986 3322
Q ss_pred hhhhhcCCHHHHHHHhC
Q 044999 256 TPVAEAGAIPLYAELLQ 272 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~ 272 (461)
..=.-..++|.+-.++.
T Consensus 883 ~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22222344666665554
No 364
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=34.05 E-value=25 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=18.7
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHH
Q 044999 380 GAVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 380 ~~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
.....+.+.+.++++.+|..|..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3456667778888999999887653
No 365
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=33.28 E-value=57 Score=31.64 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=50.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 224 PGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
..+-.+....++++++.+..++.+++.+.++|...... ..-..+++++..+.+++-+.+..++..+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34444455789999999999999999997777655543 445567777777888887777777776653
No 366
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=32.85 E-value=9e+02 Score=28.69 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=140.3
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCch-----hHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQ-----DILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~-----~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
|+-.-+.|...-.+.+..++..|...|..++ .--.+ ..+.+ .+.++..++++ . .+.+++...+.++.+
T Consensus 1135 W~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~----s-~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1135 WHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK----S-NAVEIRELIIRCVSQ 1209 (1780)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh----c-CchHHHHHHHHHHHH
Confidence 3334455566555667889999999998988 22222 23444 88888888875 3 455677778999998
Q ss_pred HHhcCCchhHHHHHhcCCHHHHHhcCC----CCCHHHHHHHHHHHHHHhccChhh-----HHHHHHcCCHHHHHHHhcCC
Q 044999 81 IASQADGALATEIGQSGVINSVLRLFP----QSDDSFRTVLVKCLRVFVTFGNEN-----RVIVARNGGLEIVIDLLNSC 151 (461)
Q Consensus 81 l~~~~~~~~~~~~~~~~~l~~L~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~g~i~~L~~ll~~~ 151 (461)
+... ....+ .. |.+.+..++. +.++.+...+-..+..+..+.-.. ...+. ..+..+.++....
T Consensus 1210 mI~s----~~~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~ 1281 (1780)
T PLN03076 1210 MVLS----RVNNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSR 1281 (1780)
T ss_pred HHHH----HHhhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCc
Confidence 8862 11223 33 4455555554 445555555555554443221000 11111 1233344444333
Q ss_pred -ChHHHHHHHHHHHHhhC----Ch------------------------HHHHHHHh-----cCCHH---HHHHHHcCCCH
Q 044999 152 -NDGTRRYLLEILSALAL----LR------------------------EVRRVLIC-----LGGLR---YLVEAVSFGSM 194 (461)
Q Consensus 152 -~~~~~~~a~~~L~~l~~----~~------------------------~~~~~~~~-----~~~l~---~l~~~l~~~~~ 194 (461)
+.++-..|+..|+.++. .+ +....+.+ ...++ .|..+..+...
T Consensus 1282 ~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~Rl 1361 (1780)
T PLN03076 1282 FNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRP 1361 (1780)
T ss_pred CcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcH
Confidence 35666777777775520 00 00000000 11233 33344556788
Q ss_pred HHHHHHHHHHHHhhcCch------hHHHHHhcCChHHHHHhcccC-------------------CHH----HHHHHHHHH
Q 044999 195 VSRERACQAIGLLAVTGR------ARRLLVELGVIPGLVELFHIG-------------------DWT----TKLVAGNTL 245 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~------~~~~~~~~~~i~~L~~ll~~~-------------------~~~----~~~~a~~~L 245 (461)
++|..|+.+|..+-..+. .+..+.. +++-+++..++.. +.+ .......+|
T Consensus 1362 EVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL 1440 (1780)
T PLN03076 1362 EIRKSALQVLFDTLRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLAL 1440 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHH
Confidence 999999999877654332 1333333 4555555554310 001 123334444
Q ss_pred HHHhcC-ccchhhhh--hcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 246 GVVAAH-VEYITPVA--EAGAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 246 ~~l~~~-~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
.++... ...-..+- =.+++..|..++..++..+...+..+|.+|.
T Consensus 1441 ~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1441 QLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 444432 11111111 1244555556666778888888888988884
No 367
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.93 E-value=5.3e+02 Score=25.73 Aligned_cols=146 Identities=8% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHH
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLV 218 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~ 218 (461)
...+.+.+-.+++..+..|+..|..=+.-......|+.. +-+....-+...|-......++.++.|..++.. ..+++
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~f-Iae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh 287 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETDSGLQQLLPYFVTF-IAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH 287 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHH-HhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Q ss_pred hcCChHHHHHhcc----------cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHH
Q 044999 219 ELGVIPGLVELFH----------IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVF 286 (461)
Q Consensus 219 ~~~~i~~L~~ll~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L 286 (461)
+ .+|.++.++- +.++.+|.-|+..+..++.+-...-.-...-++..+...+.+. +.....-++..|
T Consensus 288 ~--L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 288 Q--LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred H--HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q ss_pred HHh
Q 044999 287 CIL 289 (461)
Q Consensus 287 ~~l 289 (461)
..|
T Consensus 366 ~~l 368 (576)
T KOG2549|consen 366 SEL 368 (576)
T ss_pred HHh
No 368
>PLN03205 ATR interacting protein; Provisional
Probab=31.74 E-value=4.6e+02 Score=24.94 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=70.6
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHH---HHcCCHHHHHHHh-----cCCChHHHHHHHHHHHHhh--C
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIV---ARNGGLEIVIDLL-----NSCNDGTRRYLLEILSALA--L 168 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~g~i~~L~~ll-----~~~~~~~~~~a~~~L~~l~--~ 168 (461)
++.|+.++.-++..+...+.+.+..+..+--.++..+ .+.+.+. |++++ .+.++.++..|+.++.-+. .
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 5667778888887777777777664443222222322 2222222 23322 3567789999998887776 3
Q ss_pred Ch-HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC
Q 044999 169 LR-EVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVT 210 (461)
Q Consensus 169 ~~-~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~ 210 (461)
+. ..|+.|....+++.+-++|+.. --.++..++..|.-|...
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC 447 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC
Confidence 33 3466777778899999999876 447888888887766443
No 369
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=31.47 E-value=3.7e+02 Score=23.79 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHH----HHHHHHHHHhcCccchhhhhhcCCHHHHHHH
Q 044999 195 VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKL----VAGNTLGVVAAHVEYITPVAEAGAIPLYAEL 270 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~----~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l 270 (461)
...-.|+..|+.+ .+..+++.++.+++.++...-. .....+..+- ..+-.|-++.|..+
T Consensus 57 ~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~il-------asv~~G~~~~L~~l 119 (249)
T PF06685_consen 57 NLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRIL-------ASVGDGDIEPLKEL 119 (249)
T ss_pred HHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHH-------HHHhCCCHHHHHHH
Confidence 3345566666555 4456889999999865542111 1111111111 11223568888898
Q ss_pred hCCC--ChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHh
Q 044999 271 LQGP--DSTGKEISEDVFCILA-VSEANANAIAEHLVRIL 307 (461)
Q Consensus 271 l~~~--~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll 307 (461)
+.++ +.-+|..|..+|..++ .++..|..++..+..++
T Consensus 120 i~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll 159 (249)
T PF06685_consen 120 IEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELL 159 (249)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8877 5678999999999995 45556887774444444
No 370
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=31.34 E-value=1.1e+03 Score=29.03 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=100.4
Q ss_pred HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChH
Q 044999 93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLRE 171 (461)
Q Consensus 93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~ 171 (461)
..+.+.+..+...+.++.-.++..+...+..++..++...........+..+-++..+.-..+......-+..+- ....
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 334455555666677777777777777777777655422111111111111111111111111111111111111 1111
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHh
Q 044999 172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~ 249 (461)
..... -...+..++..+.+.+..+...+..+++.|+..... .....+ ..++.+.+.+. ..+..-+..+..++.++.
T Consensus 641 ~i~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 11111 123456677777777778888888999998877663 222333 45566666665 345566778888888887
Q ss_pred cCccc--hhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCccc
Q 044999 250 AHVEY--ITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 250 ~~~~~--~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~ 295 (461)
..... .......-++..+...++.. ...++..+...+.++...+..
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 65222 11111112344455555444 455666777777766444433
No 371
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=2e+02 Score=28.19 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC--CCHHHHHHHHHHHHHhc
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD--ESEELRDNAAESLINFS 408 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~ 408 (461)
.++..|.+.+++.++.++..|+.+|-.+.. .......+.+.+++..++...+. .+..+|..+..+|....
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 356678888888888999999987777777 44556678888999999888854 47789999998887664
No 372
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.68 E-value=1.5e+02 Score=21.47 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHh
Q 044999 232 IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCIL 289 (461)
Q Consensus 232 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l 289 (461)
.++..+|+.|+..|..++..-.....-.+..+...+.+.+.++ +...+.-|+..|..|
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999987622222222334467777777655 445666666666655
No 373
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.66 E-value=9.6e+02 Score=28.35 Aligned_cols=236 Identities=13% Similarity=0.046 Sum_probs=115.2
Q ss_pred HHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHH
Q 044999 45 ILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLR 122 (461)
Q Consensus 45 ~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~ 122 (461)
.+++ .+..++..|.. .+|.....+..++.+++.. ..-+. +-.+..+..++-+. ..++-.|.....++.
T Consensus 872 ~v~~~~~~l~~~sl~~------~~p~~rc~~~ea~arLaq~--v~~~~--f~a~~aq~~fdklas~~d~i~R~ghslalg 941 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLIN------PNPKLRCAAAEALARLAQV--VGSAP--FVASLAQNSFDKLASARDPITRTGHSLALG 941 (2067)
T ss_pred HHHHHHHHHHhhhhcc------CChHHHHHHHHHHHHHHHh--ccccc--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3444 55556666654 3455566677888888873 21111 11122333444344 344443443333333
Q ss_pred HHhccChhhHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCC---CHHHH
Q 044999 123 VFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFG---SMVSR 197 (461)
Q Consensus 123 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~ 197 (461)
.+-......-..-....++..+..+..++. |.++..++.++.-+. .........++. .+..+..++-+. ..+++
T Consensus 942 ~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~ 1020 (2067)
T KOG1822|consen 942 CLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVH 1020 (2067)
T ss_pred HHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhh
Confidence 332211111111122334566666666554 599999999998887 333333333333 234444444332 22333
Q ss_pred HHHHHHHH------Hhhc-------Cchh--HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcC
Q 044999 198 ERACQAIG------LLAV-------TGRA--RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAG 262 (461)
Q Consensus 198 ~~a~~~L~------~l~~-------~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 262 (461)
..--+++. .+.. .+.. ...-+..-.+-...-++.++++.++..+..++.++..... | ..--..
T Consensus 1021 q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFap-r-~~n~~~ 1098 (2067)
T KOG1822|consen 1021 QCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAP-R-HVNLDS 1098 (2067)
T ss_pred hhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcc-h-hccHHH
Confidence 32222222 1111 1110 0011111111122223345678888888889888765411 1 111123
Q ss_pred CHHHHHHHhCCCChhHHHHHHHHHHHhccCc
Q 044999 263 AIPLYAELLQGPDSTGKEISEDVFCILAVSE 293 (461)
Q Consensus 263 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 293 (461)
.|+.+..++.+..--.+.....+|..+....
T Consensus 1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HHHHHHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 4788888888877667777777777775543
No 374
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.50 E-value=1.8e+02 Score=27.42 Aligned_cols=71 Identities=7% Similarity=-0.062 Sum_probs=58.1
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC
Q 044999 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 251 (461)
++..+.+-+.+.++.+...|+..+..+..+... +..+....+...|..++. +..+.+.+.....+.+.+..
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 677888888999999999999999999887765 677777888899999998 66777877776666666653
No 375
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.17 E-value=2.4e+02 Score=21.31 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=30.1
Q ss_pred CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH
Q 044999 262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA 300 (461)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 300 (461)
-+++.|+.-+.++++++...|..+|...+..+.....++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 357888888988888999999999988877765444444
No 376
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.97 E-value=3.1e+02 Score=29.35 Aligned_cols=92 Identities=21% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHH--Hh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDIL--AA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l--~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
.++.++.-.+++++++...|..|...+..-. .......+ .. .=|.++..+.. +||-....|..++.++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~------k~~L~v~~a~~~i~~m 874 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLC------KDPLIVQRAFSCIEQM 874 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhc------CchHHHHHHHHHHHHH
Confidence 4566788899999999999999999887644 22222222 22 77888888876 5677777799999999
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcC
Q 044999 82 ASQADGALATEIGQSGVINSVLRLF 106 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll 106 (461)
+....+..+..+ -..++|.+-.++
T Consensus 875 ~~~sgDFv~sR~-l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 875 GKYSGDFVASRF-LEDVLPWLKHLC 898 (1014)
T ss_pred HHHhhhHHHHHH-HHHHHHHHHHHH
Confidence 986223333333 234556555444
No 377
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.54 E-value=3.9e+02 Score=23.43 Aligned_cols=138 Identities=9% Similarity=0.150 Sum_probs=78.5
Q ss_pred HhCCCChhHHHHHHHHHHHh-------c-cCcccH--HHHH----HHHHHHhccCCHHHHHHHHHHHHHhhC--C--C--
Q 044999 270 LLQGPDSTGKEISEDVFCIL-------A-VSEANA--NAIA----EHLVRILREGDNEANAAAADVLWDLAG--Y--K-- 329 (461)
Q Consensus 270 ll~~~~~~~~~~a~~~L~~l-------~-~~~~~~--~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~~--~--~-- 329 (461)
++++.++.+.+.++.+..++ . .++... +... ..+++++.++++.++..|++.+-.+.. . +
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 45667777777777766654 1 222221 1111 888899999999999999998876641 1 1
Q ss_pred -----------------Cch-----hHHh--hcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhcC-ChhhHHHHHhCCCh
Q 044999 330 -----------------HSV-----PVIR--NSGAIPILVNLLRGEN--DEVREKVSGAIAQLSY-NEADRVALADAGAV 382 (461)
Q Consensus 330 -----------------~~~-----~~l~--~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i 382 (461)
.+. ..+- ..+.+..|+..+.+.+ +.+-...+.+|..+++ .|..-..+ +
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~I-----l 155 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRI-----L 155 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHH-----H
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHH-----H
Confidence 110 0111 1134677777877665 6667778888888888 67654444 4
Q ss_pred HHHHHhccCC------------CHHHHHHHHHHHHHhcCCCc
Q 044999 383 PIMIELLHDE------------SEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 383 ~~L~~ll~~~------------~~~~~~~a~~~L~~l~~~~~ 412 (461)
+.|..+-... ...+....-..|.++..++.
T Consensus 156 ~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~ 197 (239)
T PF11935_consen 156 PALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPA 197 (239)
T ss_dssp HHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4444433211 12344444455666666654
No 378
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=29.07 E-value=1.5e+02 Score=25.21 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALAD 378 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 378 (461)
+.+...+.++++-++..++..+...... .... ..+..+...+.+++..++....++|..++. +++....++.
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~-~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~ 195 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRK-EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQ 195 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGG-CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4444555555555555665544433322 1111 122334444566677788888888888887 6665555544
No 379
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=28.53 E-value=5.7e+02 Score=24.99 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=39.8
Q ss_pred CCCcHHHhHH-HHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHH--Hh-hHHHHHHhhcc
Q 044999 4 PDTNWEEAFN-RFEQAVVSGSEALQVKALTKLARVS-KFAPQDIL--AA-TIPILARLLGE 59 (461)
Q Consensus 4 ~~~~~~~~~~-~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l--~~-~i~~l~~~l~~ 59 (461)
|+..+...+. .|...|+|.....|..|+..+..-+ .......- .. ..+.|.+.|..
T Consensus 119 ~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 119 PESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred ccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 4556777777 4899999999999999999999888 33222221 13 56677777764
No 380
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=27.75 E-value=2.3e+02 Score=20.16 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHH-HHHHHHHHHh
Q 044999 24 EALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQA-AAYCLKQIAS 83 (461)
Q Consensus 24 ~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~-a~~~L~~l~~ 83 (461)
+....++...|..+. +...-+-+++......+.|.. ++.++.+... |...|-.++.
T Consensus 5 e~~i~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~----e~~~~~vRaataIs~LdeIsn 62 (85)
T PF03685_consen 5 EEKIKQAIQMLERIINDTSVPRNIRRAAEEAKEILNN----EEESPGVRAATAISILDEISN 62 (85)
T ss_dssp HHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-----TTS-HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhC----CCcchhHhHHHHHHHHHHhhc
Confidence 344555666666666 555555556666666666665 5444555555 5555555555
No 381
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.51 E-value=1.2e+02 Score=27.50 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhCC---------------CCchhHHhhcCCHHHHHHhhc
Q 044999 299 IAEHLVRILREGDNEANAAAADVLWDLAGY---------------KHSVPVIRNSGAIPILVNLLR 349 (461)
Q Consensus 299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~---------------~~~~~~l~~~g~i~~L~~ll~ 349 (461)
.+..+++-|.+.+...+..|+.+|..++.+ ..|...+.+.|+++.|+.+|.
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 335555555555666666666666666632 134556678899999999885
No 382
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.42 E-value=8.2e+02 Score=25.86 Aligned_cols=287 Identities=11% Similarity=-0.030 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhc--cChhhHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhhCChHHH-HHHHh--cCCHHHHH
Q 044999 113 FRTVLVKCLRVFVT--FGNENRVIVARNGGLEIVIDLLNSC-NDGTRRYLLEILSALALLREVR-RVLIC--LGGLRYLV 186 (461)
Q Consensus 113 ~~~~~~~~l~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~-~~~~~--~~~l~~l~ 186 (461)
+++..++.+...+. ...+.+... -..++.+++.. |..++..+++++.-...+-+.. +.+.. ......+.
T Consensus 503 iRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 47777877776664 222333333 34588888887 5578888888888777443332 22221 23444555
Q ss_pred HHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc---cCCHHHHHHHHHHHHHHhcCccchhhhhhcC
Q 044999 187 EAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH---IGDWTTKLVAGNTLGVVAAHVEYITPVAEAG 262 (461)
Q Consensus 187 ~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 262 (461)
.++..- .-+.+...+..++.+.......-. .-.+-+-.++..+- .+.+-.+...+.+|.++...-..+..... .
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~-P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~-~ 655 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIA-PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY-P 655 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch-H
Confidence 666544 336666777777666433222100 00011112222221 23455666777788887654111111110 1
Q ss_pred CHHHHHHHhCCC-Chh---HHHHH----HHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh--CCCCch
Q 044999 263 AIPLYAELLQGP-DST---GKEIS----EDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA--GYKHSV 332 (461)
Q Consensus 263 ~i~~L~~ll~~~-~~~---~~~~a----~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~ 332 (461)
++-..+++-.+. +|+ .-+-+ ..+|.|...-++.--.+.|.+...+...++..+ .++.++..-. .++. -
T Consensus 656 fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-f 733 (978)
T KOG1993|consen 656 FLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-F 733 (978)
T ss_pred HHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-H
Confidence 122333333222 222 12222 223333322222122222666666644433222 2223332222 1111 1
Q ss_pred hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhc
Q 044999 333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFS 408 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~ 408 (461)
-.....|+.+.+.+++.+-..+-....+.++..+......-......+.++.+..-+ +.+.|.+-..-..+++.++
T Consensus 734 l~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 734 LNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 111234667777788777666666677777777766222233334445566655533 4456666655555555553
No 383
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.35 E-value=1.2e+02 Score=27.65 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=38.6
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc---------------hhHHHHHhcCChHHHHHhcc
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTG---------------RARRLLVELGVIPGLVELFH 231 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~---------------~~~~~~~~~~~i~~L~~ll~ 231 (461)
..+..+++-|.+.+...|..|+++|..++... .+...+.+.|+++.++.+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35667888888888888999999998887654 22334566788888877776
No 384
>PHA02975 hypothetical protein; Provisional
Probab=24.71 E-value=74 Score=21.29 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=20.1
Q ss_pred CCCCCCcHHHhHHHHHHHhhcCCH
Q 044999 1 MGNPDTNWEEAFNRFEQAVVSGSE 24 (461)
Q Consensus 1 ~~~~~~~~~~~~~~l~~ll~~~~~ 24 (461)
|.++|.+.++.++...+.+.+++.
T Consensus 13 msS~DdDF~nFI~vVksVLtdk~~ 36 (69)
T PHA02975 13 LESNDSDFEDFIDTIMHVLTGKKE 36 (69)
T ss_pred cCCChHHHHHHHHHHHHHHcCCCC
Confidence 788999999999999988887643
No 385
>PHA03054 IMV membrane protein; Provisional
Probab=24.10 E-value=65 Score=21.66 Aligned_cols=24 Identities=13% Similarity=0.356 Sum_probs=19.7
Q ss_pred CCCCCCcHHHhHHHHHHHhhcCCH
Q 044999 1 MGNPDTNWEEAFNRFEQAVVSGSE 24 (461)
Q Consensus 1 ~~~~~~~~~~~~~~l~~ll~~~~~ 24 (461)
|.|||.+.++.++.....+.++++
T Consensus 13 ~ss~d~Df~~Fi~vV~sVl~dk~~ 36 (72)
T PHA03054 13 MGSPEDDLTDFIEIVKSVLSDEKT 36 (72)
T ss_pred hCCchHHHHHHHHHHHHHHcCCCC
Confidence 678888899999888888887643
No 386
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=2.6e+02 Score=27.38 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=52.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGL 206 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~ 206 (461)
++..|.+-+.+.++.++..|+.+|-.+.. .+.+...+.+.+++..++...+.. +..+|..++..|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45667778888888999999998877773 355677888899999999988765 56889988887743
No 387
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=23.16 E-value=63 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=21.8
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 044999 98 VINSVLRLFPQSDDSFRTVLVKCLRVFV 125 (461)
Q Consensus 98 ~l~~L~~ll~~~~~~~~~~~~~~l~~l~ 125 (461)
.-..|+.+|+++++.|+..++..+..+.
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 3578999999999999999997776544
No 388
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.03 E-value=5.5e+02 Score=25.40 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=48.5
Q ss_pred HHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCch------------h--HHHHHhcCChHHHHHhccc-CCHHHH
Q 044999 175 VLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGR------------A--RRLLVELGVIPGLVELFHI-GDWTTK 238 (461)
Q Consensus 175 ~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~------------~--~~~~~~~~~i~~L~~ll~~-~~~~~~ 238 (461)
-+.+.+.++.|+.+|... +++++..|+.+|..+..... + .+.+.....+..|+..+-. ......
T Consensus 57 wL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~l 136 (475)
T PF04499_consen 57 WLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSL 136 (475)
T ss_pred HHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchH
Confidence 345678999999999744 77899999988777643221 1 3445556677777775552 334455
Q ss_pred HHHHHHHHHHh
Q 044999 239 LVAGNTLGVVA 249 (461)
Q Consensus 239 ~~a~~~L~~l~ 249 (461)
..++.++..+.
T Consensus 137 vn~v~IlieLI 147 (475)
T PF04499_consen 137 VNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHH
Confidence 55665655554
No 389
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=22.47 E-value=4.3e+02 Score=22.28 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA 88 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 88 (461)
+...+.+.+.++|+++-+++.+...+...... ..+...+..+...+.. ++.-+|....++|..++.. +++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d------~~~~vq~ai~w~L~~~~~~-~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKD------EEYYVQKAIGWALREIGKK-DPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTG------S-HHHHHHHHHHHHHHCTT--HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCC------chHHHHHHHHHHHHHHHHh-CHH
Confidence 45667788888999999999887776655511 1111133333344433 5678888899999999986 443
No 390
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=22.39 E-value=1.2e+03 Score=28.51 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHH----HHH----HhccCCHHHHHHHHHHHHHhhCC-CC
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEH----LVR----ILREGDNEANAAAADVLWDLAGY-KH 330 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~----l~~----ll~~~~~~~~~~a~~~L~~l~~~-~~ 330 (461)
..+.+..+...+.+..-.++..+...+++++..+. ..+.+. .+. +..++-..+.+.+..-+..+... +.
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~--a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP--AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH--HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 33445556666667777788888888888865433 111111 111 11222222222222222222111 11
Q ss_pred chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhc
Q 044999 331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEA-DRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFS 408 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~ 408 (461)
..... -...+..+...+.+.+..+...+..++..||.... --....+ ..++.+.+.+.+ .+..-+..+.+++.++.
T Consensus 641 ~i~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 11111 11234556666777777888888888999888322 1122223 446666666643 56667778888888887
Q ss_pred CCC
Q 044999 409 EDP 411 (461)
Q Consensus 409 ~~~ 411 (461)
...
T Consensus 719 s~~ 721 (2341)
T KOG0891|consen 719 SST 721 (2341)
T ss_pred ccc
Confidence 665
No 391
>PHA02650 hypothetical protein; Provisional
Probab=22.27 E-value=83 Score=21.71 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCCCCCcHHHhHHHHHHHhhcCC
Q 044999 1 MGNPDTNWEEAFNRFEQAVVSGS 23 (461)
Q Consensus 1 ~~~~~~~~~~~~~~l~~ll~~~~ 23 (461)
|.++|.+.++.++.....+.+++
T Consensus 13 msS~DdDFnnFI~VVkSVLtD~~ 35 (81)
T PHA02650 13 MSSTDDDFNNFIDVVKSVLSDED 35 (81)
T ss_pred cCCcHHHHHHHHHHHHHHHcCCC
Confidence 78899999999999988888763
No 392
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.91 E-value=9.5e+02 Score=25.31 Aligned_cols=101 Identities=17% Similarity=0.008 Sum_probs=73.3
Q ss_pred ChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHh-ccCcccHHHH
Q 044999 222 VIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCIL-AVSEANANAI 299 (461)
Q Consensus 222 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l-~~~~~~~~~i 299 (461)
+++.|..+-.+.-+.++..++.++..+-.+ ++....+ +..++.-+.+++..+...|...|.+| +.+|..+..+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 566666676777788999999999998777 5544444 67778888888888888888888888 6777777777
Q ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHhhC
Q 044999 300 AEHLVRILREG--DNEANAAAADVLWDLAG 327 (461)
Q Consensus 300 ~~~l~~ll~~~--~~~~~~~a~~~L~~l~~ 327 (461)
+..+.+++-.+ +.....+|+..|..+..
T Consensus 380 i~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 IDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 66666665333 45555667777766653
No 393
>PHA02692 hypothetical protein; Provisional
Probab=21.47 E-value=86 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.8
Q ss_pred CCCCCCcHHHhHHHHHHHhhcC
Q 044999 1 MGNPDTNWEEAFNRFEQAVVSG 22 (461)
Q Consensus 1 ~~~~~~~~~~~~~~l~~ll~~~ 22 (461)
|.|||.+.++.++...+.+.++
T Consensus 13 mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 13 LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred cCCCHHHHHHHHHHHHHHHcCC
Confidence 6789988999998888888876
No 394
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=21.38 E-value=6.4e+02 Score=23.12 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=81.8
Q ss_pred HHHHHHcCCHHHHHHHhcC-------CC----------------hHHHHHHHHHHHHhhCChHHHHHH------------
Q 044999 132 RVIVARNGGLEIVIDLLNS-------CN----------------DGTRRYLLEILSALALLREVRRVL------------ 176 (461)
Q Consensus 132 ~~~~~~~g~i~~L~~ll~~-------~~----------------~~~~~~a~~~L~~l~~~~~~~~~~------------ 176 (461)
+..+.+.|.++.|-++.+. .+ ..++..-++.+.+++....+....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 4567788888888776642 11 136677788888888533222111
Q ss_pred ----------HhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh---HHHHHhcCChHHHHHhcccC---CHHHH
Q 044999 177 ----------ICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA---RRLLVELGVIPGLVELFHIG---DWTTK 238 (461)
Q Consensus 177 ----------~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~~~---~~~~~ 238 (461)
-+.|.+..++..+... +...|-+-+.++-.+.+.... +..+.+.|.++.++..+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 1235677777777654 567788888888888776654 55688899999999876644 34577
Q ss_pred HHHHHHHHHHhcC
Q 044999 239 LVAGNTLGVVAAH 251 (461)
Q Consensus 239 ~~a~~~L~~l~~~ 251 (461)
......|+.|...
T Consensus 162 Q~~FDLLGELiK~ 174 (303)
T PF12463_consen 162 QSNFDLLGELIKF 174 (303)
T ss_pred HHHHHHHHHHHCC
Confidence 7888888888765
No 395
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=21.20 E-value=2.6e+02 Score=22.41 Aligned_cols=121 Identities=10% Similarity=0.188 Sum_probs=76.1
Q ss_pred chhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhc--cChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHH
Q 044999 87 GALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVT--FGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLLEI 162 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~ 162 (461)
++.=+.+.+.+.+..+++.++. ....++.+....+.-+.. .++..--.+...+.+..++.. ..-.++++...-+..
T Consensus 16 ~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsf 95 (149)
T PF09758_consen 16 PSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISF 95 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHH
Confidence 4455666778888999998886 556677777777765553 222333344566777777764 455577888888899
Q ss_pred HHHhh--CChHHHHHHHhc--CCHH---HHHHHHcCCCHHHHHHHHHHHHHh
Q 044999 163 LSALA--LLREVRRVLICL--GGLR---YLVEAVSFGSMVSRERACQAIGLL 207 (461)
Q Consensus 163 L~~l~--~~~~~~~~~~~~--~~l~---~l~~~l~~~~~~~~~~a~~~L~~l 207 (461)
|..++ .+++...-+... +-.| .-+++..+++.-+|..+-..+-++
T Consensus 96 LK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 96 LKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 99888 455555444442 3334 445666676766665554444443
No 396
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=21.04 E-value=1.5e+02 Score=15.66 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHH
Q 044999 395 ELRDNAAESLINFSEDPLQHERISE 419 (461)
Q Consensus 395 ~~~~~a~~~L~~l~~~~~~~~~l~~ 419 (461)
.+|..++++|.++. +++....|.+
T Consensus 2 ~vR~~aa~aLg~~~-~~~a~~~L~~ 25 (30)
T smart00567 2 LVRHEAAFALGQLG-DEEAVPALIK 25 (30)
T ss_pred HHHHHHHHHHHHcC-CHhHHHHHHH
Confidence 46788888888873 3444444443
No 397
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.72 E-value=1.8e+02 Score=23.04 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=27.9
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS 38 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la 38 (461)
..++..+.+..++.+.|..++..|..++..--
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 47788899999999999999999999987544
No 398
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=20.38 E-value=91 Score=21.23 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCCCCCcHHHhHHHHHHHhhcCCH
Q 044999 1 MGNPDTNWEEAFNRFEQAVVSGSE 24 (461)
Q Consensus 1 ~~~~~~~~~~~~~~l~~ll~~~~~ 24 (461)
|.+||.+.++.++...+.+.++..
T Consensus 13 mss~ddDf~~Fi~vVksVltdk~~ 36 (72)
T PF12575_consen 13 MSSSDDDFNNFINVVKSVLTDKKK 36 (72)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcc
Confidence 678998999999999888887765
No 399
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.10 E-value=9.5e+02 Score=24.62 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHHHHh---ccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999 281 ISEDVFCIL---AVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVRE 357 (461)
Q Consensus 281 ~a~~~L~~l---~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~ 357 (461)
.|..+++.| ..+-.....++..++.++.+....+...++.++..+..++.... ...+++..+-.+++..+..+..
T Consensus 304 vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~--~sl~~Vr~i~~llK~rn~~v~~ 381 (704)
T KOG2153|consen 304 VAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGS--GSLAIVRIINSLLKTRNYEVLP 381 (704)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccc--hhHHHHHHHHHHhhhhcccchh
Confidence 344455544 33444566666777788888888888999999999987755211 1122344455555555555555
Q ss_pred HHHHHHHHhc
Q 044999 358 KVSGAIAQLS 367 (461)
Q Consensus 358 ~a~~~L~~l~ 367 (461)
.+..++.+|=
T Consensus 382 ~~~~~~lsLr 391 (704)
T KOG2153|consen 382 DMITTFLSLR 391 (704)
T ss_pred hHHHHHHhcc
Confidence 5555554443
Done!