Query 044999
Match_columns 461
No_of_seqs 297 out of 2182
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 15:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 7.5E-42 2.6E-46 341.2 30.4 438 8-456 288-781 (810)
2 1jdh_A Beta-catenin; beta-cate 100.0 1.6E-39 5.5E-44 321.9 40.5 434 9-456 16-529 (529)
3 2z6h_A Catenin beta-1, beta-ca 100.0 6.6E-39 2.3E-43 323.7 43.7 437 9-459 13-529 (644)
4 3now_A UNC-45 protein, SD10334 100.0 2.1E-39 7.3E-44 323.6 30.7 424 18-457 255-737 (810)
5 3ul1_B Importin subunit alpha- 100.0 3.3E-38 1.1E-42 309.0 38.6 394 11-410 58-479 (510)
6 3ul1_B Importin subunit alpha- 100.0 2.2E-38 7.6E-43 310.2 36.8 392 49-453 58-474 (510)
7 2z6g_A B-catenin; FULL-length, 100.0 4.6E-38 1.6E-42 322.1 40.7 438 9-460 149-666 (780)
8 3tpo_A Importin subunit alpha- 100.0 1.7E-37 5.8E-42 305.8 38.9 392 49-453 77-493 (529)
9 3tpo_A Importin subunit alpha- 100.0 3.8E-37 1.3E-41 303.3 40.8 395 9-409 75-497 (529)
10 3l6x_A Catenin delta-1; cateni 100.0 5.9E-37 2E-41 296.4 38.2 364 49-421 49-488 (584)
11 4b8j_A Importin subunit alpha- 100.0 1.4E-36 4.8E-41 300.3 40.5 399 9-413 73-500 (528)
12 4b8j_A Importin subunit alpha- 100.0 3.5E-36 1.2E-40 297.5 40.2 394 49-455 75-494 (528)
13 1wa5_B Importin alpha subunit; 100.0 2E-35 6.8E-40 292.0 42.1 399 8-412 85-513 (530)
14 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-35 5.7E-40 293.1 41.5 392 10-408 59-529 (529)
15 2z6h_A Catenin beta-1, beta-ca 100.0 2.3E-35 8E-40 297.8 42.4 396 10-412 56-530 (644)
16 1wa5_B Importin alpha subunit; 100.0 2.5E-35 8.5E-40 291.3 41.4 395 49-456 88-509 (530)
17 3nmz_A APC variant protein; pr 100.0 8.9E-37 3.1E-41 289.1 28.4 352 49-411 33-452 (458)
18 1xm9_A Plakophilin 1; armadill 100.0 2.1E-36 7.1E-41 291.7 30.8 357 49-414 3-454 (457)
19 2jdq_A Importin alpha-1 subuni 100.0 3.9E-35 1.3E-39 284.5 37.0 400 6-412 13-446 (450)
20 2z6g_A B-catenin; FULL-length, 100.0 1.4E-34 4.8E-39 296.3 41.6 397 9-412 191-666 (780)
21 2jdq_A Importin alpha-1 subuni 100.0 2E-34 6.9E-39 279.4 38.5 393 49-456 21-442 (450)
22 3l6x_A Catenin delta-1; cateni 100.0 5.3E-35 1.8E-39 282.8 34.0 365 9-381 47-489 (584)
23 1xm9_A Plakophilin 1; armadill 100.0 7.7E-35 2.6E-39 280.8 31.2 354 11-373 3-454 (457)
24 3nmz_A APC variant protein; pr 100.0 1.4E-34 4.7E-39 274.1 27.5 353 11-368 33-450 (458)
25 3nmw_A APC variant protein; AR 100.0 5.3E-31 1.8E-35 242.7 23.1 260 154-413 47-338 (354)
26 3nmw_A APC variant protein; AR 100.0 5E-30 1.7E-34 236.1 22.8 260 71-368 49-334 (354)
27 3opb_A SWI5-dependent HO expre 100.0 9E-27 3.1E-31 228.2 32.6 389 9-409 254-728 (778)
28 3opb_A SWI5-dependent HO expre 100.0 3.4E-26 1.2E-30 224.1 31.6 411 29-456 231-727 (778)
29 4hxt_A De novo protein OR329; 100.0 2.1E-26 7.1E-31 205.0 25.0 239 139-413 2-245 (252)
30 4hxt_A De novo protein OR329; 100.0 6.7E-26 2.3E-30 201.6 27.2 238 49-293 3-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 2.6E-26 8.9E-31 204.3 22.7 235 139-409 12-251 (252)
32 4db8_A Armadillo-repeat protei 99.9 5.6E-26 1.9E-30 202.2 23.4 236 49-291 13-251 (252)
33 4db6_A Armadillo repeat protei 99.9 9.1E-23 3.1E-27 176.0 23.0 197 95-291 10-209 (210)
34 4db6_A Armadillo repeat protei 99.9 9.6E-22 3.3E-26 169.6 24.5 195 49-250 13-209 (210)
35 3tt9_A Plakophilin-2; cell adh 99.9 4.7E-22 1.6E-26 170.2 18.7 194 98-292 9-230 (233)
36 3tt9_A Plakophilin-2; cell adh 99.9 4.9E-22 1.7E-26 170.1 18.1 197 49-251 9-230 (233)
37 1b3u_A Protein (protein phosph 99.9 3.3E-19 1.1E-23 178.5 34.6 419 8-456 162-586 (588)
38 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-20 9.8E-25 166.5 23.1 180 70-251 56-239 (296)
39 1xqr_A HSPBP1 protein; armadil 99.9 1.8E-20 6.2E-25 167.8 21.3 182 194-411 54-240 (296)
40 3grl_A General vesicular trans 99.8 7.4E-16 2.5E-20 147.5 44.1 440 7-453 18-546 (651)
41 1b3u_A Protein (protein phosph 99.8 7E-18 2.4E-22 168.8 29.5 380 8-408 201-586 (588)
42 4fdd_A Transportin-1; heat rep 99.8 6.5E-18 2.2E-22 176.3 27.3 385 14-411 49-473 (852)
43 4fdd_A Transportin-1; heat rep 99.8 8.7E-17 3E-21 167.7 31.0 312 4-327 122-471 (852)
44 3grl_A General vesicular trans 99.8 1.1E-14 3.7E-19 139.5 37.8 392 9-406 59-547 (651)
45 2vgl_B AP-2 complex subunit be 99.7 1.5E-15 5.2E-20 151.1 30.3 359 13-408 89-456 (591)
46 2vgl_B AP-2 complex subunit be 99.7 2.4E-15 8.3E-20 149.6 24.8 366 8-409 47-419 (591)
47 2bpt_A Importin beta-1 subunit 99.7 2E-14 6.9E-19 150.3 31.0 392 6-410 130-586 (861)
48 1w63_A Adapter-related protein 99.7 5.3E-14 1.8E-18 140.5 31.0 284 11-327 108-414 (618)
49 1qgr_A Protein (importin beta 99.7 3.6E-14 1.2E-18 148.7 27.8 314 5-327 123-479 (876)
50 1oyz_A Hypothetical protein YI 99.6 8.3E-14 2.8E-18 125.3 25.6 258 93-405 19-278 (280)
51 1w63_A Adapter-related protein 99.6 6.4E-14 2.2E-18 139.9 26.9 323 9-368 69-414 (618)
52 1ibr_B P95, importin beta-1 su 99.6 6E-14 2.1E-18 135.8 22.3 380 13-411 4-439 (462)
53 2bpt_A Importin beta-1 subunit 99.6 1.9E-12 6.4E-17 135.4 33.0 386 10-410 39-483 (861)
54 1oyz_A Hypothetical protein YI 99.6 2.6E-13 8.8E-18 122.1 22.1 229 136-409 20-250 (280)
55 1qgr_A Protein (importin beta 99.6 1E-12 3.5E-17 137.7 28.3 385 9-410 34-480 (876)
56 1ibr_B P95, importin beta-1 su 99.6 1.7E-13 5.8E-18 132.6 20.7 345 10-368 35-437 (462)
57 1u6g_C TIP120 protein, CAND1; 99.5 2E-12 6.7E-17 140.2 25.1 384 7-408 83-547 (1230)
58 2vgl_A Adaptor protein complex 99.5 3.2E-12 1.1E-16 127.2 24.1 323 10-368 74-433 (621)
59 3ltm_A Alpha-REP4; protein eng 99.5 2.2E-12 7.5E-17 110.7 18.7 190 179-413 18-207 (211)
60 3ltm_A Alpha-REP4; protein eng 99.5 5E-12 1.7E-16 108.4 20.6 189 95-329 17-205 (211)
61 1u6g_C TIP120 protein, CAND1; 99.5 2.2E-11 7.6E-16 132.0 29.6 381 10-410 6-464 (1230)
62 3ltj_A Alpharep-4; protein eng 99.5 5.5E-12 1.9E-16 107.3 18.7 184 180-408 14-197 (201)
63 3ltj_A Alpharep-4; protein eng 99.5 7.8E-12 2.7E-16 106.4 19.3 185 96-326 13-197 (201)
64 2vgl_A Adaptor protein complex 99.4 1.6E-10 5.6E-15 115.0 30.6 361 11-408 112-508 (621)
65 1ho8_A Vacuolar ATP synthase s 99.0 4.2E-07 1.4E-11 84.4 26.8 310 49-367 78-475 (480)
66 4gmo_A Putative uncharacterize 99.0 1.6E-08 5.6E-13 101.9 17.4 216 49-272 35-286 (684)
67 4ady_A RPN2, 26S proteasome re 99.0 4.3E-06 1.5E-10 84.6 34.3 308 98-455 393-717 (963)
68 3b2a_A TON_1937, putative unch 99.0 9.4E-08 3.2E-12 78.9 18.3 219 180-403 33-255 (265)
69 3tjz_B Coatomer subunit gamma; 98.9 3.7E-08 1.3E-12 89.5 16.5 279 9-323 67-349 (355)
70 4gmo_A Putative uncharacterize 98.9 1.1E-08 3.6E-13 103.3 13.4 193 9-208 33-257 (684)
71 3b2a_A TON_1937, putative unch 98.9 1.8E-07 6.2E-12 77.2 17.3 181 140-329 34-220 (265)
72 2db0_A 253AA long hypothetical 98.9 2.8E-06 9.5E-11 67.2 22.8 213 177-409 29-246 (253)
73 2qk2_A LP04448P; mini spindles 98.8 5.7E-08 1.9E-12 84.9 13.4 179 183-368 18-205 (242)
74 3tjz_B Coatomer subunit gamma; 98.7 1.4E-06 4.8E-11 79.1 20.4 272 100-404 71-348 (355)
75 2db0_A 253AA long hypothetical 98.7 3.3E-05 1.1E-09 61.1 24.6 216 9-251 31-247 (253)
76 1wa5_C Importin alpha RE-expor 98.7 8.1E-05 2.8E-09 78.5 35.4 378 12-410 37-526 (960)
77 2qk2_A LP04448P; mini spindles 98.7 4.2E-07 1.4E-11 79.3 14.8 180 223-411 17-207 (242)
78 1ho8_A Vacuolar ATP synthase s 98.7 6.3E-06 2.2E-10 76.6 22.3 309 97-408 77-475 (480)
79 2qk1_A Protein STU2; STU2P, XM 98.6 3.9E-07 1.3E-11 79.5 12.3 184 185-368 21-220 (249)
80 4ady_A RPN2, 26S proteasome re 98.6 0.00011 3.7E-09 74.7 30.6 311 9-366 391-717 (963)
81 1te4_A Conserved protein MTH18 98.5 3.9E-08 1.3E-12 76.8 1.7 121 261-407 11-131 (131)
82 1wa5_C Importin alpha RE-expor 98.4 6.9E-05 2.4E-09 79.0 25.7 344 9-368 84-525 (960)
83 2qk1_A Protein STU2; STU2P, XM 98.4 5E-06 1.7E-10 72.4 14.0 185 224-408 19-219 (249)
84 1te4_A Conserved protein MTH18 98.4 3.9E-08 1.3E-12 76.8 -0.1 119 139-288 12-130 (131)
85 2iw3_A Elongation factor 3A; a 98.3 1.9E-05 6.5E-10 81.0 18.1 291 102-407 19-322 (986)
86 3dad_A FH1/FH2 domain-containi 98.2 7.8E-05 2.7E-09 65.9 17.4 147 143-289 122-284 (339)
87 3dad_A FH1/FH2 domain-containi 98.1 0.00012 4.1E-09 64.7 16.7 176 182-357 120-325 (339)
88 2iw3_A Elongation factor 3A; a 98.1 0.00042 1.4E-08 71.2 22.0 292 144-455 19-322 (986)
89 2x1g_F Cadmus; transport prote 98.0 0.00059 2E-08 72.1 22.3 383 7-410 79-573 (971)
90 3m1i_C Exportin-1; heat repeat 98.0 0.01 3.5E-07 63.1 30.8 371 24-410 114-570 (1049)
91 2x1g_F Cadmus; transport prote 97.9 0.0028 9.5E-08 67.0 25.5 384 7-410 119-616 (971)
92 2x19_B Importin-13; nuclear tr 97.9 0.017 5.9E-07 60.8 30.0 387 7-410 97-557 (963)
93 2x19_B Importin-13; nuclear tr 97.8 0.019 6.6E-07 60.5 29.4 383 7-410 138-600 (963)
94 3oc3_A Helicase MOT1, MOT1; re 97.8 5.4E-05 1.9E-09 70.9 7.9 253 99-405 176-432 (800)
95 3m1i_C Exportin-1; heat repeat 97.7 0.021 7.2E-07 60.7 28.3 386 6-409 134-618 (1049)
96 4hat_C Exportin-1; heat repeat 97.7 0.05 1.7E-06 57.2 30.1 371 24-410 114-570 (1023)
97 1lrv_A LRV, leucine-rich repea 97.7 1.2E-05 4E-10 69.2 2.4 187 102-404 55-241 (244)
98 3ibv_A Exportin-T; karyopherin 97.7 0.0028 9.6E-08 66.4 19.6 390 7-412 82-569 (980)
99 1upk_A MO25 protein; transfera 97.6 0.015 5.2E-07 51.3 19.7 203 92-295 73-287 (341)
100 3ibv_A Exportin-T; karyopherin 97.5 0.0056 1.9E-07 64.1 19.3 350 6-368 124-566 (980)
101 4ffb_C Protein STU2; tubulin f 97.4 0.007 2.4E-07 53.5 16.3 183 185-368 14-212 (278)
102 2fv2_A RCD1 required for cell 97.4 0.0064 2.2E-07 51.3 14.4 211 152-366 14-266 (268)
103 3gjx_A Exportin-1; transport, 97.2 0.25 8.5E-06 52.0 27.5 371 23-411 125-597 (1073)
104 4hat_C Exportin-1; heat repeat 97.2 0.31 1.1E-05 51.2 30.1 386 6-412 134-621 (1023)
105 2fv2_A RCD1 required for cell 97.2 0.0066 2.3E-07 51.2 12.3 171 155-325 72-266 (268)
106 4ffb_C Protein STU2; tubulin f 97.2 0.011 3.6E-07 52.3 14.6 181 223-410 12-213 (278)
107 1upk_A MO25 protein; transfera 97.1 0.031 1.1E-06 49.4 16.6 199 133-333 72-289 (341)
108 2of3_A ZYG-9; multifunctional 97.0 0.038 1.3E-06 47.7 16.2 176 184-368 50-236 (266)
109 2of3_A ZYG-9; multifunctional 96.9 0.025 8.7E-07 48.8 13.7 174 100-289 49-234 (266)
110 1lrv_A LRV, leucine-rich repea 96.9 0.0012 4E-08 56.7 5.3 141 100-322 101-241 (244)
111 3oc3_A Helicase MOT1, MOT1; re 96.7 0.013 4.6E-07 55.3 11.0 213 181-408 175-403 (800)
112 3ebb_A Phospholipase A2-activa 96.4 0.14 4.9E-06 45.3 15.8 154 141-295 105-267 (304)
113 3ebb_A Phospholipase A2-activa 96.1 0.081 2.8E-06 46.9 12.6 184 264-453 105-302 (304)
114 3l9t_A Putative uncharacterize 95.8 0.1 3.4E-06 43.8 10.9 141 224-378 74-218 (240)
115 3u0r_A Apoptosis inhibitor 5; 95.7 0.21 7.1E-06 46.5 13.4 96 8-122 63-159 (507)
116 2f31_A Diaphanous protein homo 95.4 0.74 2.5E-05 39.0 15.3 144 214-358 37-218 (233)
117 3u0r_A Apoptosis inhibitor 5; 95.4 1.8 6.1E-05 40.4 20.2 248 102-368 34-298 (507)
118 3c2g_A SYS-1 protein; beta-cat 95.1 0.33 1.1E-05 42.9 12.0 115 156-272 260-377 (619)
119 3l9t_A Putative uncharacterize 95.1 0.48 1.6E-05 39.7 12.5 135 264-412 73-210 (240)
120 3eg5_B Protein diaphanous homo 95.0 1.6 5.5E-05 40.0 17.3 144 214-358 103-284 (383)
121 1lsh_A Lipovitellin (LV-1N, LV 94.2 4.5 0.00015 42.8 20.6 161 223-408 358-542 (1056)
122 3a6p_A Exportin-5; exportin-5, 93.7 7.5 0.00026 41.8 21.5 286 23-328 26-381 (1204)
123 3a6p_A Exportin-5; exportin-5, 93.1 11 0.00038 40.6 25.6 228 10-251 89-381 (1204)
124 2bnx_A Diaphanous protein homo 92.7 5.3 0.00018 36.7 16.1 139 220-358 46-222 (386)
125 3gjx_A Exportin-1; transport, 91.8 15 0.0005 38.8 32.0 385 6-410 146-645 (1073)
126 3qml_C Protein SLS1, nucleotid 91.1 4.1 0.00014 35.5 12.3 142 143-289 26-187 (315)
127 3c2g_A SYS-1 protein; beta-cat 90.8 3.5 0.00012 36.6 11.7 110 121-231 266-377 (619)
128 3qml_C Protein SLS1, nucleotid 90.6 7.7 0.00026 33.8 13.5 153 5-167 17-188 (315)
129 1lsh_A Lipovitellin (LV-1N, LV 90.5 18 0.00063 38.2 19.4 170 9-213 390-580 (1056)
130 2f31_A Diaphanous protein homo 88.2 11 0.00036 31.8 16.3 151 127-279 32-216 (233)
131 3o2t_A Symplekin; heat repeat, 86.8 18 0.00062 32.9 19.2 205 196-413 41-305 (386)
132 3eg5_B Protein diaphanous homo 86.2 20 0.00068 32.8 19.9 158 118-278 88-281 (383)
133 2bnx_A Diaphanous protein homo 85.1 23 0.00077 32.4 15.9 147 132-280 41-221 (386)
134 3gs3_A Symplekin, LD45768P; he 84.2 19 0.00064 30.8 16.7 124 195-326 30-172 (257)
135 3gs3_A Symplekin, LD45768P; he 82.4 22 0.00076 30.3 21.2 150 5-167 7-172 (257)
136 1mhq_A ADP-ribosylation factor 81.3 16 0.00056 28.0 11.1 72 49-126 39-116 (148)
137 3ldz_A STAM-1, signal transduc 80.5 2.4 8.3E-05 32.5 4.9 70 340-409 43-114 (140)
138 3ldz_A STAM-1, signal transduc 79.5 5.9 0.0002 30.3 6.8 69 141-209 44-114 (140)
139 1mhq_A ADP-ribosylation factor 78.5 5 0.00017 31.0 6.1 72 340-411 39-118 (148)
140 3o2t_A Symplekin; heat repeat, 78.1 40 0.0014 30.7 13.6 128 237-367 41-182 (386)
141 3g2s_A C-terminal fragment of 77.3 5.3 0.00018 30.9 6.0 72 340-411 49-128 (149)
142 3g2s_A C-terminal fragment of 76.7 10 0.00035 29.2 7.4 69 141-209 50-126 (149)
143 1x5b_A Signal transducing adap 76.5 9.1 0.00031 30.1 7.2 68 141-208 54-124 (163)
144 1x5b_A Signal transducing adap 72.2 7.6 0.00026 30.6 5.8 71 340-410 53-126 (163)
145 1juq_A ADP-ribosylation factor 70.8 13 0.00044 29.5 6.8 69 141-209 52-128 (171)
146 3gae_A Protein DOA1; UFD3, CDC 69.6 5.1 0.00017 34.3 4.6 103 307-412 99-220 (253)
147 1juq_A ADP-ribosylation factor 68.5 8.1 0.00028 30.7 5.2 72 340-411 51-130 (171)
148 3zyq_A Hepatocyte growth facto 66.9 9.6 0.00033 31.9 5.7 71 340-410 46-119 (226)
149 1vsy_5 Proteasome activator BL 65.5 69 0.0024 33.5 12.8 179 141-326 135-364 (997)
150 3zyq_A Hepatocyte growth facto 64.0 15 0.00053 30.6 6.4 69 141-209 47-118 (226)
151 1elk_A Target of MYB1; superhe 62.1 53 0.0018 25.4 9.6 72 49-125 54-129 (157)
152 2xpp_A IWS1, ECU08_0440; trans 61.7 51 0.0018 25.1 8.8 81 325-408 47-135 (145)
153 3s4w_B Protein FACD2, fanconi 61.2 1.8E+02 0.0062 31.3 17.2 336 4-367 186-548 (1323)
154 3pst_A Protein DOA1; protein d 58.8 20 0.00067 33.1 6.5 131 279-412 243-392 (425)
155 1dvp_A HRS, hepatocyte growth 56.4 23 0.00078 29.4 6.1 68 141-208 44-114 (220)
156 1vsy_5 Proteasome activator BL 55.8 77 0.0026 33.2 11.1 175 181-368 134-365 (997)
157 3l3f_X Protein DOA1, DOA1/UFD3 52.5 28 0.00094 31.4 6.3 130 279-411 180-328 (362)
158 3gae_A Protein DOA1; UFD3, CDC 49.7 24 0.00081 30.1 5.2 90 156-251 71-170 (253)
159 1elk_A Target of MYB1; superhe 49.6 61 0.0021 25.1 7.2 69 141-209 55-130 (157)
160 3vld_A DNA mismatch repair pro 49.5 1.7E+02 0.0058 27.4 15.8 159 236-407 51-223 (500)
161 1vdy_A Hypothetical protein (R 47.8 87 0.003 23.7 7.5 69 340-411 50-132 (140)
162 1dvp_A HRS, hepatocyte growth 44.9 28 0.00095 28.9 4.9 70 340-409 43-115 (220)
163 3nfq_A Transcription factor IW 42.3 1.2E+02 0.0042 23.7 9.1 81 327-410 64-152 (170)
164 3rru_A TOM1L1 protein; structu 40.3 1.2E+02 0.0042 23.2 9.2 73 49-126 54-130 (152)
165 3l3f_X Protein DOA1, DOA1/UFD3 39.8 2.1E+02 0.0072 25.7 10.7 126 238-372 180-331 (362)
166 3vld_A DNA mismatch repair pro 33.3 3.1E+02 0.011 25.7 17.1 372 9-410 30-463 (500)
167 1vdy_A Hypothetical protein (R 30.6 1.7E+02 0.006 22.0 7.3 73 8-83 47-129 (140)
168 4atg_A TAF6; transcription, TF 28.9 2.3E+02 0.0078 22.8 8.2 107 181-289 41-160 (196)
169 3pst_A Protein DOA1; protein d 28.9 3.4E+02 0.012 24.9 14.0 129 238-375 243-397 (425)
170 1t06_A Hypothetical protein; s 23.9 2.5E+02 0.0085 23.3 7.4 76 301-378 111-191 (235)
171 2xpp_A IWS1, ECU08_0440; trans 22.8 2.5E+02 0.0086 21.3 8.9 76 129-207 51-134 (145)
172 3rru_A TOM1L1 protein; structu 22.5 1E+02 0.0035 23.7 4.3 74 340-413 54-134 (152)
173 2b6c_A Hypothetical protein EF 21.0 2.4E+02 0.0082 23.0 6.6 36 342-377 162-198 (220)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.5e-42 Score=341.21 Aligned_cols=438 Identities=17% Similarity=0.127 Sum_probs=363.0
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
.++.++.|+.+++++++.++..|..++++++ +...++.+.+ .++.|+.++++ + ++.++..|+.+|++++..+
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s----~--~~~vr~~Al~~L~kl~s~~ 361 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS----K--NDGIRVRALVGLCKLGSYG 361 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTC----S--CHHHHHHHHHHHHHHHTTT
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcC----C--CHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999 8778888777 77999999986 3 3557777999999998632
Q ss_pred CchhHHHHHhcCC----HHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHH-HcCCHHHHHHHhcCCChHHHHH
Q 044999 86 DGALATEIGQSGV----INSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVA-RNGGLEIVIDLLNSCNDGTRRY 158 (461)
Q Consensus 86 ~~~~~~~~~~~~~----l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~ 158 (461)
........++.|. ++.++++|.++ +++++..++++|.+++. +++.+..++ +.|+++.|++++++.++.++..
T Consensus 362 ~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~ 440 (810)
T 3now_A 362 GQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYG 440 (810)
T ss_dssp TTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence 2122223334444 55677888877 88899999999999995 446666666 5799999999999999999999
Q ss_pred HHHHHHHhhCChH------------------------------HH---HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Q 044999 159 LLEILSALALLRE------------------------------VR---RVLICLGGLRYLVEAVSFGSMVSRERACQAIG 205 (461)
Q Consensus 159 a~~~L~~l~~~~~------------------------------~~---~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~ 205 (461)
|+++|.|++.+.+ .+ +.+++.|+++.|+.++.++++.++..|+++|+
T Consensus 441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999995431 22 67889999999999999999999999999999
Q ss_pred HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh---hcCCHHHHHHHhCCC-ChhHHHH
Q 044999 206 LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA---EAGAIPLYAELLQGP-DSTGKEI 281 (461)
Q Consensus 206 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~g~i~~L~~ll~~~-~~~~~~~ 281 (461)
|++.+.+++..+.+.|+++.|+.++.++++..++.|+++|.+++.+.+....+. ..|++|.|+.++.++ +...+..
T Consensus 521 NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~e 600 (810)
T 3now_A 521 AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFE 600 (810)
T ss_dssp HHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHH
Confidence 999887789999999999999999999999999999999999987633222221 246899999999866 3345678
Q ss_pred HHHHHHHhccCc-ccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh-cCCHHHHHHhhcCCCHH
Q 044999 282 SEDVFCILAVSE-ANANAIA-----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN-SGAIPILVNLLRGENDE 354 (461)
Q Consensus 282 a~~~L~~l~~~~-~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~L~~ll~~~~~~ 354 (461)
|+.+|.||+..+ +.+..++ +.|+.++.++++.++..|+++|+|++.+++.+..+.. .|.++.|+.++.+.+..
T Consensus 601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 999999998774 5566666 9999999999999999999999999998888888875 78999999999999999
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHHh-CCChHHHHHhccCCCHHHHHHHHHHHHHhcCC-CcchHHHHHhhCCchHHhHHH
Q 044999 355 VREKVSGAIAQLSY-NEADRVALAD-AGAVPIMIELLHDESEELRDNAAESLINFSED-PLQHERISEAIGIPSFQSMQS 431 (461)
Q Consensus 355 v~~~a~~~L~~l~~-~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~~~~~~~~~l~~ 431 (461)
++..|+++|++++. ++...+.+++ .|+++.|++++.+++.+++..|+++|.|++.. ++..+.+.+.|+++.+.++++
T Consensus 681 vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999999999 8888888888 89999999999999999999999999999764 456677887777777666654
Q ss_pred HHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 432 RLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 432 ~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
. .++.+..+.+.+..+++.+.
T Consensus 761 ~----~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 761 L----PDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp C----TTSTTHHHHHHHHHHHHHHH
T ss_pred C----cccCcHHHHHHHHHHHHHHH
Confidence 1 11235567777777766653
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.6e-39 Score=321.93 Aligned_cols=434 Identities=18% Similarity=0.203 Sum_probs=371.9
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
...++.|+.+++++++.++..|+..|++++ ++..+..+.. .++.++++|.. + +++++++.++.+|.+++.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~----~-~~~~~~~~a~~~L~~ls~- 89 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTAGTLHNLSH- 89 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTT-
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc----C-CCHHHHHHHHHHHHHHHc-
Confidence 456899999999999999999999999999 6666655553 89999999985 3 367889999999999998
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
+++++..+.+.|+++.|+++++++++.++..++.++.+++..++..+..+.+.|+++.|+++++++++.++..++.+|.
T Consensus 90 -~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 90 -HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred -CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999887788899999999999999999999999999999999
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----------
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----------- 231 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------- 231 (461)
+++ .+++.+..+.+.|+++.++.++.++ +...+..++.+|.+++..++.+..+.+.|+++.|+.++.
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 999 5788999999999999999999877 456777889999999988777777777777666665554
Q ss_pred ----------------------------cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC--CChhHHH
Q 044999 232 ----------------------------IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG--PDSTGKE 280 (461)
Q Consensus 232 ----------------------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~ 280 (461)
+++++++..++++|++++.+ ++++..+.+.|+++.|+.++.+ .+++++.
T Consensus 249 ~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~ 328 (529)
T 1jdh_A 249 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328 (529)
T ss_dssp HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHH
Confidence 45667777788888888776 5678888889999999999975 3479999
Q ss_pred HHHHHHHHhccCccc----HHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999 281 ISEDVFCILAVSEAN----ANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~----~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
.++.+|.|++..... +..+. +.+++++.+++ +.++..++++|+|++.+++++..+.+.|+++.|++++.+
T Consensus 329 ~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408 (529)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHH
Confidence 999999999775332 33444 99999998876 799999999999999988888999999999999999987
Q ss_pred CCHHHHH----------------------HHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 351 ENDEVRE----------------------KVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 351 ~~~~v~~----------------------~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
+++.++. .++.+|++|+.+++++..+.+.|+++.|+.++.++++.++..++++|.+++
T Consensus 409 ~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 6666655 455666778888888999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
.+++....+.+.++++.+.++++ + .++.+++.+..++++++
T Consensus 489 ~~~~~~~~i~~~~~~~~L~~l~~------~-~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 489 QDKEAAEAIEAEGATAPLTELLH------S-RNEGVATYAAAVLFRMS 529 (529)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGG------C-SSHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCChHHHHHHhc------C-CCHHHHHHHHHHHHhcC
Confidence 88888888988888888776664 3 47789999999988874
No 3
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=323.69 Aligned_cols=437 Identities=18% Similarity=0.204 Sum_probs=377.7
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
...++.|+.+++++++.++..|+..|++++ +...+..+.. +++.+++.|.+ + +++++++.|+.+|.+++.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~----~-~~~~~~~~A~~~L~~Ls~- 86 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTAGTLHNLSH- 86 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS----C-CCHHHHHHHHHHHHHHTT-
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc----C-CCHHHHHHHHHHHHHHhc-
Confidence 346899999999999999999999999999 6666666553 79999999985 3 467899999999999998
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
+.+.+..+.+.|+++.|+++|+++++.++..++.++.+++...+..+..+.+.|+++.|++++++.++.++..++.+|.
T Consensus 87 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 87 -HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp -SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred -ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999887788889999999999999999999999999999999
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-----------
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----------- 231 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------- 231 (461)
+++ .+++.+..+.+.|+++.|+.++.+. ....+..++.+|.+++...+.+..+.+.|+++.|+.++.
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 999 5889999999999999999999877 467888999999999988878888888887777766554
Q ss_pred ----------------------------cCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC--ChhHHH
Q 044999 232 ----------------------------IGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP--DSTGKE 280 (461)
Q Consensus 232 ----------------------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~ 280 (461)
+++++++..++++|.+|+.. ++++..+.+.|+++.|+.++.+. .++++.
T Consensus 246 ~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~ 325 (644)
T 2z6h_A 246 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325 (644)
T ss_dssp HHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHH
Confidence 45667777778888888776 56778888899999999999763 379999
Q ss_pred HHHHHHHHhccCcc----cHHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999 281 ISEDVFCILAVSEA----NANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 281 ~a~~~L~~l~~~~~----~~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
.++.+|.|++.... .+..+. +.|+++|.+.+ +.++..|+++|+|++.+++++..+.+.|+++.|++++.+
T Consensus 326 ~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 326 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhc
Confidence 99999999976432 223233 99999998875 799999999999999998888999999999999999976
Q ss_pred C----------------------CHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 351 E----------------------NDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 351 ~----------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
. +.+++..++.+|++|+.++.++..+.+.|+++.|++++.++++.++..++++|.+++
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 345777899999999998899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCC
Q 044999 409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDP 459 (461)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 459 (461)
.+++.+..+.+.++++.+..+++ +.++.+++.+..++.++..++
T Consensus 486 ~~~~~~~~i~~~g~l~~L~~ll~-------~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 486 QDKEAAEAIEAEGATAPLTELLH-------SRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TSHHHHHHHHHTTCHHHHHHHTT-------CSCHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHcCChhHHHHHHc-------CCCHHHHHHHHHHHHHHhccC
Confidence 88888888888888776665543 347779999999998888765
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-39 Score=323.58 Aligned_cols=424 Identities=15% Similarity=0.161 Sum_probs=356.0
Q ss_pred HhhcCCHHHHHHHHHHHHhhc--CCCchhHHH-h--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999 18 AVVSGSEALQVKALTKLARVS--KFAPQDILA-A--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE 92 (461)
Q Consensus 18 ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~-~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 92 (461)
.+...+..-...|+.++.++. .......+. . .++.++.++.+ +++.+|..|++++.+++. +..+++.
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s------~~~~~q~~A~~al~~aa~--~~~~R~~ 326 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT------DDELQQRVACECLIAASS--KKDKAKA 326 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS------SCHHHHHHHHHHHHHHTT--SHHHHHT
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC------CCHHHHHHHHHHHHHHcC--CcHHHHH
Confidence 444677788889999999998 444444443 4 99999999987 567788889999999888 7889999
Q ss_pred HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCC----HHHHHHHhcCC--ChHHHHHHHHHHHH
Q 044999 93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGG----LEIVIDLLNSC--NDGTRRYLLEILSA 165 (461)
Q Consensus 93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~----i~~L~~ll~~~--~~~~~~~a~~~L~~ 165 (461)
+.+.|+ +.|+.+++++++.++..++.+|+++..... +......+.|. ++.|.++|.++ +++++..|+++|.+
T Consensus 327 I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLay 405 (810)
T 3now_A 327 LCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAY 405 (810)
T ss_dssp THHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 999886 999999999999999999999999874321 22212222343 56678888887 88999999999999
Q ss_pred hhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCch------------------------------hH
Q 044999 166 LALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGR------------------------------AR 214 (461)
Q Consensus 166 l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~------------------------------~~ 214 (461)
++.+++.+..+.. .|+++.|+.++++++..++..++++|.|++...+ .+
T Consensus 406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~ 485 (810)
T 3now_A 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFIN 485 (810)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHH
T ss_pred HhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHH
Confidence 9999999998885 6899999999999999999999999999998542 12
Q ss_pred ---HHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 215 ---RLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 215 ---~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
+.+.+.|+++.|+.++.++++.+++.|+++|.|++.+++++..+++.|++|.|+.++.++++..++.|+++|.|++.
T Consensus 486 ~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 486 KRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999999999988899999999999999999999999999999999999965
Q ss_pred CcccHH--------HHHHHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHH
Q 044999 292 SEANAN--------AIAEHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSG 361 (461)
Q Consensus 292 ~~~~~~--------~i~~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~ 361 (461)
+.+... ..+++|+++|.++ +...+..|+++|.||+.. ++++..+++.|+++.|+.++.++++.++..|++
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 432211 1229999999866 455667999999999976 577889999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHh-CCChHHHHHhccCCCHHHHHHHHHHHHHhcC-CCcchHHHHH-hhCCchHHhHHHHHHHhhh
Q 044999 362 AIAQLSYNEADRVALAD-AGAVPIMIELLHDESEELRDNAAESLINFSE-DPLQHERISE-AIGIPSFQSMQSRLTRIRA 438 (461)
Q Consensus 362 ~L~~l~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~-~~~~~~~~~l~~~l~~~~~ 438 (461)
+|+|++.+++.+..+.+ .|.++.|+.++.+++..++..|+++|.||+. ++...+.+.+ .++++.+..++ .
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL-------~ 718 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI-------A 718 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH-------T
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH-------C
Confidence 99999998888888885 7889999999999999999999999999987 6666667766 55555555444 3
Q ss_pred chhHHHHHHHHHhHhhhcc
Q 044999 439 SDDLMARSMRRMSIEQLTW 457 (461)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~ 457 (461)
+.+..+++.+-.++.++++
T Consensus 719 s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 719 NPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 4578899999999888875
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.3e-38 Score=309.00 Aligned_cols=394 Identities=20% Similarity=0.250 Sum_probs=342.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
.++.+++.++|+|+..+..|+..+..+. ...+.+.+.+ +||.|+++|+. ++++.+|..|+++|.+++.+
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~-----~~~~~lq~~Aa~aL~nias~- 131 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIASG- 131 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC-----TTCHHHHHHHHHHHHHHHTS-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHhcC-
Confidence 4789999999999999999999998865 3334455555 99999999984 35688999999999999986
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-----HHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-----GTRRYLL 160 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~a~ 160 (461)
+.+.+..+.+.|+++.|+++|+++++.++..++++|.+++.++++.+..+.+.|+++.|+.++...+. .....++
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 78888899999999999999999999999999999999999899999999999999999999987653 4678899
Q ss_pred HHHHHhhCChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHH
Q 044999 161 EILSALALLREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTK 238 (461)
Q Consensus 161 ~~L~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~ 238 (461)
+++.+++.+.... ......++++.|+.++.+++++++..++++|.+++..... ...+.+.|+++.|+.++.+++..++
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 291 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 291 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence 9999999654333 3333457899999999999999999999999999998877 6678889999999999999999999
Q ss_pred HHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCC
Q 044999 239 LVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILREGD 311 (461)
Q Consensus 239 ~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~ 311 (461)
..++.+|+|++.. +..+..+.+.|+++.|+.++.++++.+++.++++|.|++..... +..+. +.++.++.+++
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 9999999999887 67778888999999999999999999999999999999765554 34343 99999999999
Q ss_pred HHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C------hhhHHHHHhCCCh
Q 044999 312 NEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N------EADRVALADAGAV 382 (461)
Q Consensus 312 ~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~------~~~~~~~~~~~~i 382 (461)
++++..|+++|+|++. .++....+++.|+++.|+.+|.+.++.++..++.+|.++.. . ...+..+.+.|++
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence 9999999999999995 45667789999999999999999999999999999999875 1 2234567789999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 383 PIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 383 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
+.|-.+..+++.++.+.|..+|-.....
T Consensus 452 ~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 452 DKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999887543
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.2e-38 Score=310.23 Aligned_cols=392 Identities=15% Similarity=0.154 Sum_probs=333.3
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~ 127 (461)
.|+.+++.+.+ +|+..|..|+..++.+.+.......+.+++.|++|.|+++|++ +++.+|..|+++|.+++..
T Consensus 58 ~i~~~v~~l~s------~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~ 131 (510)
T 3ul1_B 58 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 131 (510)
T ss_dssp CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999986 6788999999999998764234456788899999999999975 5688999999999999999
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERAC 201 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~ 201 (461)
+++++..+++.|+++.|+.+|+++++.+++.|+++|++++ .+++.+..+.+.|+++.++.++...+ ..+.+.++
T Consensus 132 ~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999 45788999999999999999998664 35788999
Q ss_pred HHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCc-cchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999 202 QAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHV-EYITPVAEAGAIPLYAELLQGPDSTGK 279 (461)
Q Consensus 202 ~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (461)
+++.+++..... .......++++.|+.++.+++++++..++++|.+|+.+. +....+.+.|+++.|+.++.+.++.++
T Consensus 212 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 291 (510)
T 3ul1_B 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 291 (510)
T ss_dssp HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhh
Confidence 999999987765 444455678999999999999999999999999999884 455667788999999999999999999
Q ss_pred HHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC
Q 044999 280 EISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN 352 (461)
Q Consensus 280 ~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~ 352 (461)
..++.+|.|++..++. ...+. +.|+.+++++++.++..|+++|.|++.+ ++....+.+.|+++.|+.++.+++
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 9999999999765554 44444 8888999999999999999999999964 567788889999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc-------chHHHHHhhCC
Q 044999 353 DEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL-------QHERISEAIGI 423 (461)
Q Consensus 353 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------~~~~l~~~~~~ 423 (461)
..++..|+++|+|++. +++....+++.|+++.|+.++++.+++++..++++|.|+....+ ....+.+.||+
T Consensus 372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 451 (510)
T 3ul1_B 372 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 451 (510)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH
Confidence 9999999999999998 67778889999999999999999999999999999999964321 23456677777
Q ss_pred chHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999 424 PSFQSMQSRLTRIRASDDLMARSMRRMSIE 453 (461)
Q Consensus 424 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 453 (461)
..++.++. ..++.+.+.|..+++
T Consensus 452 ~~ie~Lq~-------~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 452 DKIEALQR-------HENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHGGG-------CSSHHHHHHHHHHHH
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 66665543 234556665555553
No 7
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.6e-38 Score=322.09 Aligned_cols=438 Identities=18% Similarity=0.213 Sum_probs=376.0
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
...++.|+.++.++++.+|..|+.+|++|+ +...+..+.. +++.|++.|+. + +++.+++.|+.+|.+++.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~----~-~d~~vr~~Aa~aL~~Ls~- 222 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN----T-NDVETARCTSGTLHNLSH- 222 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHHT-
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC----C-CCHHHHHHHHHHHHHHhC-
Confidence 567899999999999999999999999999 6656666553 89999999986 4 368899999999999998
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
...++..+.+.|+++.|+++|+++++.++..++.+|.+++...+..+..+.+.|+++.|++++.+.+..++..++.+|.
T Consensus 223 -~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 223 -HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301 (780)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred -CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6777888999999999999999999999999999999999887788899999999999999999999999999999999
Q ss_pred Hhh-CChHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH--------------
Q 044999 165 ALA-LLREVRRVLICLGGLRYLVEAVSFGS-MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE-------------- 228 (461)
Q Consensus 165 ~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-------------- 228 (461)
+++ .+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.....+..+.+.|+++.|+.
T Consensus 302 ~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~ 381 (780)
T 2z6g_A 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381 (780)
T ss_dssp HHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHH
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHH
Confidence 999 67889999999999999999998774 45667888999999987766777766666555554
Q ss_pred -------------------------hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-C-hhHHH
Q 044999 229 -------------------------LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-D-STGKE 280 (461)
Q Consensus 229 -------------------------ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~-~~~~~ 280 (461)
++.+.++.++..|+++|++|+.. ++.+..+.+.|+++.|+.++.+. + .+++.
T Consensus 382 ~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~ 461 (780)
T 2z6g_A 382 WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461 (780)
T ss_dssp HHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence 44556677788888888888877 56778888889999999999763 3 48999
Q ss_pred HHHHHHHHhccCccc----HHHHH-----HHHHHHhccCC-HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC
Q 044999 281 ISEDVFCILAVSEAN----ANAIA-----EHLVRILREGD-NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~----~~~i~-----~~l~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
.++.+|.|++..... +..+. +.|+++|.+.+ +.++..|+++|+|++.+++++..+.+.|+++.|++++.+
T Consensus 462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 541 (780)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999764332 23343 99999998876 599999999999999988888889999999999999975
Q ss_pred CC----------------------HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 351 EN----------------------DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 351 ~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
++ ++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.++..++.+|.+|+
T Consensus 542 ~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 542 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 33 45677899999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhccCCC
Q 044999 409 EDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLTWDPD 460 (461)
Q Consensus 409 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 460 (461)
.+++.+..+.+.++++.+.++++ + .+..+++.+..++..+..+++
T Consensus 622 ~~~~~~~~i~~~g~i~~L~~Ll~------~-~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 622 QDKEAAEAIEAEGATAPLTELLH------S-RNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGG------C-SCHHHHHHHHHHHHHHHTTSC
T ss_pred cCHHHHHHHHHCCCHHHHHHHHc------C-CCHHHHHHHHHHHHHHHcCCh
Confidence 88888889999888888776654 3 477899999999999887664
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.7e-37 Score=305.78 Aligned_cols=392 Identities=15% Similarity=0.154 Sum_probs=336.3
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~ 127 (461)
.++.+++.+.+ +|++.|..|+..+.++.+.+.....+.+.+.|++|.|+++|+ +.++.++..++++|.+++..
T Consensus 77 ~l~~lv~~l~s------~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 68899999986 678899999999999876434455678889999999999997 45688999999999999999
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERAC 201 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~ 201 (461)
+++.+..+.+.|+++.|+.++.++++.+++.|+++|++++ .+++.+..+.+.|+++.|+.++...+ ..+...++
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 9899999999999999999999999999999999999999 56888999999999999999998653 35788999
Q ss_pred HHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHH
Q 044999 202 QAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGK 279 (461)
Q Consensus 202 ~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (461)
+++.+++.+... .......++++.|+.++.+++++++..++++|.+++.+ ++....+...|+++.|+.++.+.++.++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 310 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 310 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHH
Confidence 999999988766 44445567899999999999999999999999999998 4555667788999999999999999999
Q ss_pred HHHHHHHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCC
Q 044999 280 EISEDVFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGEN 352 (461)
Q Consensus 280 ~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~ 352 (461)
..++.+|.|++..++. ...+. +.|+.++.++++.++..|+++|+|++.+ +.....+.+.|+++.|+.++.+++
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 9999999999765544 44444 8999999999999999999999999964 566777889999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC-------cchHHHHHhhCC
Q 044999 353 DEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP-------LQHERISEAIGI 423 (461)
Q Consensus 353 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~l~~~~~~ 423 (461)
..++..|+++|+|++. +++....+++.|+++.|++++.+.+++++..++++|.|+.... .....+.++||+
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 9999999999999997 6777888999999999999999999999999999999986421 123456778888
Q ss_pred chHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999 424 PSFQSMQSRLTRIRASDDLMARSMRRMSIE 453 (461)
Q Consensus 424 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 453 (461)
..++.++. . .++.+.+.|..+++
T Consensus 471 ~~ie~Lq~------~-~n~~i~~~A~~iie 493 (529)
T 3tpo_A 471 DKIEALQR------H-ENESVYKASLNLIE 493 (529)
T ss_dssp HHHTGGGG------C-SSHHHHHHHHHHHH
T ss_pred HHHHHHHc------C-CCHHHHHHHHHHHH
Confidence 77776654 2 35556666655554
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.8e-37 Score=303.26 Aligned_cols=395 Identities=20% Similarity=0.253 Sum_probs=343.7
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS 83 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~ 83 (461)
...++.+++.+.|+|+..+..|+..+..+. +..+.+.+.+ +||.|+++|.. ++++.+|..|+++|.+++.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~-----~~~~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK-----TDCSPIQFESAWALTNIAS 149 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC-----TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHc
Confidence 346789999999999999999999998865 3334455555 99999999984 3568899999999999998
Q ss_pred cCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-----HHHHH
Q 044999 84 QADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-----GTRRY 158 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----~~~~~ 158 (461)
+ +......+.+.|+++.|++++.++++.++..++++|.+++.++++++..+.+.|+++.|+.++...+. .....
T Consensus 150 ~-~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 150 G-TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp S-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred C-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 6 67777889999999999999999999999999999999999999999999999999999999987653 46788
Q ss_pred HHHHHHHhhCChHH-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHH
Q 044999 159 LLEILSALALLREV-RRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWT 236 (461)
Q Consensus 159 a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~ 236 (461)
+++++.+++.+... .......++++.|+.++.+++++++..++++|.+++...+. ...+.+.|+++.|+.++.++++.
T Consensus 229 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 308 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 308 (529)
T ss_dssp HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChh
Confidence 99999999965433 33334467899999999999999999999999999998877 67788899999999999999999
Q ss_pred HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHH-----HHHHHHhcc
Q 044999 237 TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIA-----EHLVRILRE 309 (461)
Q Consensus 237 ~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~-----~~l~~ll~~ 309 (461)
++..++.+|+|++.. +..+..+.+.|+++.|+.++.++++.++..|+++|.|++.+... ...+. +.++.++.+
T Consensus 309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999999887 67778888999999999999999999999999999999876554 33333 999999999
Q ss_pred CCHHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-------ChhhHHHHHhCC
Q 044999 310 GDNEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-------NEADRVALADAG 380 (461)
Q Consensus 310 ~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~ 380 (461)
++++++..|+++|+|++. .++....+++.|+++.|+.+|.++++.++..++.+|.++.. ....+..+.+.|
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g 468 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG 468 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC
Confidence 999999999999999995 45667789999999999999999999999999999999874 123345677899
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 381 AVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 381 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
+++.|..+..+++.++...|..+|-....
T Consensus 469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 469 GLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999987653
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.9e-37 Score=296.36 Aligned_cols=364 Identities=16% Similarity=0.163 Sum_probs=314.0
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhcc-
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTF- 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~- 127 (461)
.|+.++++|++ +++++|..|+.+|.+++.. ++.++..+.+.|+++.|+++|+++++.++..++++|.+++..
T Consensus 49 ~i~~LV~~L~s------~~~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLGF------RLDAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHCC------CCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 89999999986 4678999999999999975 788999999999999999999999999999999999999985
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------------
Q 044999 128 GNENRVIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS---------------- 190 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~---------------- 190 (461)
+.+++..+.+.|+++.|+++|++ .+..+++.|+.+|++++.+++++..+++ ++++.|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence 68999999999999999999997 5778999999999999999999999886 57999999771
Q ss_pred --CCCHHHHHHHHHHHHHhhcCchh-HHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcCc--c-----
Q 044999 191 --FGSMVSRERACQAIGLLAVTGRA-RRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAHV--E----- 253 (461)
Q Consensus 191 --~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~--~----- 253 (461)
..+++++..|.++|.||+...+. +..+.+. |+++.|+.++++ .+...++.|+++|+||+... +
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 22579999999999999998876 8888885 556799999874 46789999999999999751 0
Q ss_pred -------------------chhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcc-----cHHHHH-----HHH
Q 044999 254 -------------------YITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEA-----NANAIA-----EHL 303 (461)
Q Consensus 254 -------------------~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~-----~~~~i~-----~~l 303 (461)
....+...++++.|+.+++ +.++.+++.|+++|.||+.... .+..+. +.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 1112233355778899995 5589999999999999976532 222221 999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCC--------CHHHHHHHHHHHHHhcC-ChhhHH
Q 044999 304 VRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGE--------NDEVREKVSGAIAQLSY-NEADRV 374 (461)
Q Consensus 304 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~--------~~~v~~~a~~~L~~l~~-~~~~~~ 374 (461)
+++|.++++.++..|+++|+||+.++.++..+ ..|+++.|+++|.++ +.++...++++|.|++. +++++.
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~ 439 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999998888766 679999999999876 46789999999999987 899999
Q ss_pred HHHhCCChHHHHHhccCC--CHHHHHHHHHHHHHhcCCCcchHHHHHhh
Q 044999 375 ALADAGAVPIMIELLHDE--SEELRDNAAESLINFSEDPLQHERISEAI 421 (461)
Q Consensus 375 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~l~~~~ 421 (461)
.+.+.|+++.|+++++++ .+.+++.|+++|+++..+.+.+..+.+.|
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G 488 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTT
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcC
Confidence 999999999999999875 89999999999999999998887777654
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.4e-36 Score=300.34 Aligned_cols=399 Identities=18% Similarity=0.176 Sum_probs=349.5
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CC-CchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHh
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS--KF-APQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIAS 83 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~-~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~ 83 (461)
.+.++.++..+.++++.++..|+..|.+++ .. .....+.+ +++.|+++|.+ + +++.++..|+++|.+++.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~----~-~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR----E-DFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTC----T-TCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCC----C-CCHHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999996 32 45555555 99999999986 3 347889999999999999
Q ss_pred cCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh-cCCChHHHHHHHHH
Q 044999 84 QADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL-NSCNDGTRRYLLEI 162 (461)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~ 162 (461)
+ +...+..+.+.|+++.|+++|+++++.++..+++++.+++..++.++..+.+.|+++.|+.++ .+.++.++..++++
T Consensus 148 ~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 148 G-TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp S-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5 678888999999999999999999999999999999999988888999999999999999999 67788999999999
Q ss_pred HHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHH
Q 044999 163 LSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVA 241 (461)
Q Consensus 163 L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a 241 (461)
|.+++...+........++++.|+.++.+.++.++..++++|++++...+. ...+.+.|+++.|+.++.++++.++..|
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a 306 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPA 306 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHH
Confidence 999996544444455689999999999999999999999999999988877 5778889999999999999999999999
Q ss_pred HHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-cHHHHH-----HHHHHHhccCCHH
Q 044999 242 GNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEA-NANAIA-----EHLVRILREGDNE 313 (461)
Q Consensus 242 ~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~~~~i~-----~~l~~ll~~~~~~ 313 (461)
+++|++++.. +.....+.+.|+++.|+.++.+. ++.++..|+++|.|++.... ....+. +.|+.+|.++++.
T Consensus 307 ~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 386 (528)
T 4b8j_A 307 LRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFD 386 (528)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999999986 66777788899999999999988 99999999999999986443 333333 9999999999999
Q ss_pred HHHHHHHHHHHhhCC--CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------hHHHHHhC
Q 044999 314 ANAAAADVLWDLAGY--KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA-----------DRVALADA 379 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~-----------~~~~~~~~ 379 (461)
++..|+++|.+++.. ++....+.+.|+++.|+.++.++++.++..++.+|.++.. .+. ....+.+.
T Consensus 387 v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 466 (528)
T 4b8j_A 387 IKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA 466 (528)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC
Confidence 999999999999954 6778888899999999999999999999999999999987 332 46777899
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999 380 GAVPIMIELLHDESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
|+++.+..+.++.+++++..|..++.++....++
T Consensus 467 ~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 467 EGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999999999999766543
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.5e-36 Score=297.48 Aligned_cols=394 Identities=19% Similarity=0.210 Sum_probs=340.3
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCC-HHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSD-DSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~~~~~~~~l~~l~~~ 127 (461)
.++.+++.|.+ +++..|..|+.+|.+++..+.......+.+.|+++.|+++|++++ +.++..+++++.+++..
T Consensus 75 ~l~~lv~~L~s------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 75 SLPAMIGGVYS------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp CHHHHHHHHTS------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 79999999986 467888899999999987533366778889999999999999887 99999999999999988
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIG 205 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~ 205 (461)
+++.+..+.+.|+++.|+.++.++++.++..|+++|.+++ ..+..+..+.+.|+++.|+.++ .+.++.++..++++|.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 5577888999999999999999 5678999999999999
Q ss_pred HhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-chhhhhhcCCHHHHHHHhCCCChhHHHHHHH
Q 044999 206 LLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-YITPVAEAGAIPLYAELLQGPDSTGKEISED 284 (461)
Q Consensus 206 ~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~ 284 (461)
+++...+........++++.|+.++.++++.++..++++|.+++...+ ....+.+.|+++.|+.++.+.++.++..|+.
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~ 308 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHH
Confidence 999987654445568999999999999999999999999999998744 4467778899999999999999999999999
Q ss_pred HHHHhccCccc-HHHHH-----HHHHHHhccC-CHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHH
Q 044999 285 VFCILAVSEAN-ANAIA-----EHLVRILREG-DNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVR 356 (461)
Q Consensus 285 ~L~~l~~~~~~-~~~i~-----~~l~~ll~~~-~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~ 356 (461)
+|.|++...+. ...+. +.|+.+|.++ ++.++..|+++|.+++.. ++....+.+.|+++.|+.++.++++.++
T Consensus 309 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999875543 33333 9999999998 999999999999999964 4566778889999999999999999999
Q ss_pred HHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHHhhC
Q 044999 357 EKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISEAIG 422 (461)
Q Consensus 357 ~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~~~~ 422 (461)
..|+++|.+++. +++....+.+.|+++.|+.++.+++++++..++++|.++....+. ...+.+.++
T Consensus 389 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 389 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 999999999998 478888999999999999999999999999999999999865432 445556555
Q ss_pred CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhh
Q 044999 423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQL 455 (461)
Q Consensus 423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
...+..+. ...++.+++.+..+++.+
T Consensus 469 ~~~l~~L~-------~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 469 LEKIENLQ-------SHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHGG-------GCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------cCCCHHHHHHHHHHHHHH
Confidence 55554443 223566777777777654
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2e-35 Score=292.02 Aligned_cols=399 Identities=17% Similarity=0.198 Sum_probs=349.2
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C--CCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-K--FAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA 82 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~--~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~ 82 (461)
+...++.++..+.++++.++..|+..|.++. . ......+.+ +++.|+++|.+ + +++.++..|+++|.+++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~----~-~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE----N-QPEMLQLEAAWALTNIA 159 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTST----T-SCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCC----C-CCHHHHHHHHHHHHHHh
Confidence 5567899999999999999999999999997 3 344445554 99999999986 3 36789999999999999
Q ss_pred hcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Q 044999 83 SQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEI 162 (461)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 162 (461)
.. .......+.+.|+++.|+++|+++++.++..+++++.+++..+++.+..+...|+++.|+.++.+.++.++..|+++
T Consensus 160 ~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 238 (530)
T 1wa5_B 160 SG-TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238 (530)
T ss_dssp TS-CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHH
Confidence 85 56777888899999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHhhCCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999 163 LSALALLR-EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLV 240 (461)
Q Consensus 163 L~~l~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~ 240 (461)
|.+++.+. +........++++.|+.++.++++.++..++++|.+++...+. ...+.+.|+++.|+.++.++++.++..
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~ 318 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence 99999554 4444556688999999999999999999999999999988765 777888999999999999999999999
Q ss_pred HHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-ccHHHHH-----HHHHHHhccCCHH
Q 044999 241 AGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE-ANANAIA-----EHLVRILREGDNE 313 (461)
Q Consensus 241 a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~-----~~l~~ll~~~~~~ 313 (461)
|+++|++++.. +.....+.+.|+++.|+.++.++++.++..|+++|.+++... +....+. +.|+++|.++++.
T Consensus 319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 398 (530)
T 1wa5_B 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 99999999987 556667778899999999999999999999999999998643 3333333 8999999999999
Q ss_pred HHHHHHHHHHHhhCC--C--CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------hHHHHH
Q 044999 314 ANAAAADVLWDLAGY--K--HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA-----------DRVALA 377 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~--~--~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~-----------~~~~~~ 377 (461)
++..|+++|.+++.. + +....+.+.|+++.|+.++.+.++.++..++++|.++.. .+. ....+.
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 478 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence 999999999999953 4 577788899999999999999999999999999999988 322 346688
Q ss_pred hCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 378 DAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 378 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
+.|+++.|..+..++++++++.|..+|.++....+
T Consensus 479 ~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 479 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999999999999999999999999999976654
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.7e-35 Score=293.11 Aligned_cols=392 Identities=18% Similarity=0.244 Sum_probs=338.7
Q ss_pred HhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 10 EAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 10 ~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+.++.+++++.++ ++.++..|+.+|.+++ ++.++..+.+ +++.|+++|++ +++.+|..|+.+|.+++.+
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~- 131 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS------PVDSVLFYAITTLHNLLLH- 131 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-
Confidence 6789999999765 8999999999999999 7667777777 99999999986 4578999999999999995
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEILS 164 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~ 164 (461)
++..+..+.+.|+++.|+++++++++.++..++.++.+++..+++++..+.+.|+++.|+.++++.++ ..+..++.+|.
T Consensus 132 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~ 211 (529)
T 1jdh_A 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211 (529)
T ss_dssp CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 56678888899999999999999999999999999999998888999999999999999999987654 56677888999
Q ss_pred HhhCChHHHHHHHhcCCHHHHHHH---------------------------------------HcCCCHHHHHHHHHHHH
Q 044999 165 ALALLREVRRVLICLGGLRYLVEA---------------------------------------VSFGSMVSRERACQAIG 205 (461)
Q Consensus 165 ~l~~~~~~~~~~~~~~~l~~l~~~---------------------------------------l~~~~~~~~~~a~~~L~ 205 (461)
+++.+++.+..+.+.|+++.++.+ +.+++++++..++++|+
T Consensus 212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999888888888877766655544 44556777888888888
Q ss_pred HhhcCch-hHHHHHhcCChHHHHHhccc--CCHHHHHHHHHHHHHHhcC-cc---chhhhhhcCCHHHHHHHhCCCC-hh
Q 044999 206 LLAVTGR-ARRLLVELGVIPGLVELFHI--GDWTTKLVAGNTLGVVAAH-VE---YITPVAEAGAIPLYAELLQGPD-ST 277 (461)
Q Consensus 206 ~l~~~~~-~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~---~~~~~~~~g~i~~L~~ll~~~~-~~ 277 (461)
+++..++ .+..+.+.|+++.|+.++.+ .++.++..++.+|+|++.. ++ .+..+.+.|+++.|+.++.+++ +.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 8887765 48888899999999999985 3479999999999999886 33 4678888999999999999886 59
Q ss_pred HHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCCHHHHH----------------------HHHHHHHHhhCCCC
Q 044999 278 GKEISEDVFCILAVSEANANAIA-----EHLVRILREGDNEANA----------------------AAADVLWDLAGYKH 330 (461)
Q Consensus 278 ~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~~~~~~----------------------~a~~~L~~l~~~~~ 330 (461)
++..++++|.|++.+++.+..+. +.|++++++++++++. .++.+|.+++..++
T Consensus 372 v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~ 451 (529)
T 1jdh_A 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 451 (529)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCch
Confidence 99999999999998888876665 8888888876666555 55566777887778
Q ss_pred chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
++..+.+.|+++.|+.++.++++.++..++++|.+++.++..+..+.+.|+++.|.+++++++++++..|.++|.+|+
T Consensus 452 ~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999998888999999999999999999999999999999999874
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=297.81 Aligned_cols=396 Identities=18% Similarity=0.241 Sum_probs=347.0
Q ss_pred HhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 10 EAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 10 ~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+.++.+++.+.++ ++.++..|+.+|.+++ +..++..+.+ +++.|+++|++ +++.+|..|+.+|.+++..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~nL~~~- 128 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS------PVDSVLFYAITTLHNLLLH- 128 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhC-
Confidence 6789999999875 8999999999999999 7667777777 99999999986 4578999999999999986
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTRRYLLEILS 164 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~ 164 (461)
++..+..+.+.|+++.|+++|+++++.++..++.++.+++..+++++..+.+.|+++.|+.++++.+ ...+..++.+|.
T Consensus 129 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208 (644)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788889999999999999999988888889999999888899999999999999999998765 477889999999
Q ss_pred HhhCChHHHHHHHhcCCHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Q 044999 165 ALALLREVRRVLICLGGLRYLVEAV---------------------------------------SFGSMVSRERACQAIG 205 (461)
Q Consensus 165 ~l~~~~~~~~~~~~~~~l~~l~~~l---------------------------------------~~~~~~~~~~a~~~L~ 205 (461)
+++.+++.+..+++.|+++.|+.++ .+.+++++..++++|+
T Consensus 209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9998889999998888777766554 4456677778888888
Q ss_pred HhhcCchh-HHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHHHhcC-c---cchhhhhhcCCHHHHHHHhCCCC-hh
Q 044999 206 LLAVTGRA-RRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGVVAAH-V---EYITPVAEAGAIPLYAELLQGPD-ST 277 (461)
Q Consensus 206 ~l~~~~~~-~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~~L~~ll~~~~-~~ 277 (461)
+|+..++. +..+.+.|+++.|+.++.+. .+.++..++.+|++++.. + ..+..+.+.|+++.|+.++.+.+ +.
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~ 368 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence 88876654 78888899999999999863 379999999999999875 3 23556778899999999999875 69
Q ss_pred HHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccC----------------------CHHHHHHHHHHHHHhhCCCC
Q 044999 278 GKEISEDVFCILAVSEANANAIA-----EHLVRILREG----------------------DNEANAAAADVLWDLAGYKH 330 (461)
Q Consensus 278 ~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~----------------------~~~~~~~a~~~L~~l~~~~~ 330 (461)
++..++++|.|++.++.++..+. +.|++++.+. +++++..++.+|++|+.++.
T Consensus 369 v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~ 448 (644)
T 2z6h_A 369 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448 (644)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999888886665 8888888653 35677889999999999888
Q ss_pred chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
++..+.+.|+++.|++++.++++.++..++++|.+++.+++.+..+.+.|+++.|.+++++++++++..|+++|.+++.+
T Consensus 449 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 449 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred Cc
Q 044999 411 PL 412 (461)
Q Consensus 411 ~~ 412 (461)
..
T Consensus 529 ~~ 530 (644)
T 2z6h_A 529 KP 530 (644)
T ss_dssp SC
T ss_pred Cc
Confidence 75
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.5e-35 Score=291.31 Aligned_cols=395 Identities=14% Similarity=0.115 Sum_probs=340.3
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~ 127 (461)
.++.+++.|++ +++..|..|+.+|.++...+.......+.+.|+++.|+++|+++ ++.++..+++++.+++..
T Consensus 88 ~i~~lv~~L~s------~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 88 ELPQMTQQLNS------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp CHHHHHHHHSC------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 89999999986 46788999999999997642344556778899999999999997 899999999999999988
Q ss_pred ChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999 128 GNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGL 206 (461)
Q Consensus 128 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~ 206 (461)
+++.+..+...|+++.|+.++.++++.++..|+++|.+++. +++.+..+...|+++.|+.++.+.+..++..++++|++
T Consensus 162 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999995 57788888999999999999999999999999999999
Q ss_pred hhcCc-hhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHH
Q 044999 207 LAVTG-RARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISED 284 (461)
Q Consensus 207 l~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~ 284 (461)
++... +........++++.|+.++.++++.++..++++|.+++.. ++....+.+.|+++.|+.++.+.++.++..++.
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~ 321 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHH
Confidence 99876 4445556688999999999999999999999999999987 556777888899999999999999999999999
Q ss_pred HHHHhccCccc-HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHH
Q 044999 285 VFCILAVSEAN-ANAIA-----EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVRE 357 (461)
Q Consensus 285 ~L~~l~~~~~~-~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~ 357 (461)
+|.+++...+. ...+. +.++.+|.++++.++..|+++|.+++. +++....+.+.|+++.|+.++.++++.++.
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99999866543 33332 899999999999999999999999996 455667778899999999999999999999
Q ss_pred HHHHHHHHhcC--Ch--hhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHHhh
Q 044999 358 KVSGAIAQLSY--NE--ADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISEAI 421 (461)
Q Consensus 358 ~a~~~L~~l~~--~~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~~~ 421 (461)
.++++|++++. .+ +....+.+.|+++.|+.++.+.++.++..++++|.++....+. ...+.+.+
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 99999999998 34 6778888999999999999999999999999999999865432 24455666
Q ss_pred CCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 422 GIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 422 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++..+..+++ +.++.+++.+..+++.+-
T Consensus 482 ~~~~L~~L~~-------~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 482 GMEKIFNCQQ-------NENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHGGGG-------CSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHc-------CCCHHHHHHHHHHHHHHC
Confidence 6666555443 336678888888777653
No 17
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=289.09 Aligned_cols=352 Identities=18% Similarity=0.210 Sum_probs=295.9
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC------------CHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS------------DDSFRTV 116 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~------------~~~~~~~ 116 (461)
.++.++..+.+ .+. + ...+.|..+.. +...+..+++.|++|.|+++|+.. +++.+..
T Consensus 33 ~~~~l~~~~~~----~~~--~---~~~~~ll~~~~--~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 33 MVYSLLSMLGT----HDK--D---DMSRTLLAMSS--SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp ----------------CC--H---HHHHHHHHHHS--STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred HHHHHHHHhcC----CCH--H---HHHHHHHHHHc--CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 67788888875 332 2 36688999998 666888999999999999999963 3689999
Q ss_pred HHHHHHHHhccChhhHHHHHHcCCH----------HHHHHHhcCCC--hH-----HHH-------HHHHHHHHhhCChHH
Q 044999 117 LVKCLRVFVTFGNENRVIVARNGGL----------EIVIDLLNSCN--DG-----TRR-------YLLEILSALALLREV 172 (461)
Q Consensus 117 ~~~~l~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~~~~ 172 (461)
+++++.+++...++......+.|.+ +.+++++.+.. .+ +++ .|+++|.|++.++++
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~ 181 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 181 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHH
Confidence 9999999999888888888888877 66667776542 11 444 999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCchh-HHHHHh-cCChHHHHHhcccCCHHHHH
Q 044999 173 RRVLICLGGLRYLVEAVSF-----------GSMVSRERACQAIGLLAVTGRA-RRLLVE-LGVIPGLVELFHIGDWTTKL 239 (461)
Q Consensus 173 ~~~~~~~~~l~~l~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~ll~~~~~~~~~ 239 (461)
|..+.+.|+++.|+.++.. .++.++..|+++|.||+..++. +..+.. .|+++.|+.+|.++++++++
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999952 2467899999999999998875 656654 56699999999999999999
Q ss_pred HHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhcc-CcccHHHHH------HHHHHHhcc
Q 044999 240 VAGNTLGVVAAH--VEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAV-SEANANAIA------EHLVRILRE 309 (461)
Q Consensus 240 ~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~------~~l~~ll~~ 309 (461)
.|+++|+||+.. ++++..+.+.|+++.|+.+| .+.++.+++.++.+|.||+. .++++..+. +.|+++|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999985 56889999999999999975 56688999999999999998 667777765 999999987
Q ss_pred CCH----HHHHHHHHHHHHhhC----CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCC
Q 044999 310 GDN----EANAAAADVLWDLAG----YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAG 380 (461)
Q Consensus 310 ~~~----~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~ 380 (461)
+++ ++++.|+++|+|++. +++++..+.+.|+++.|+.+|.+++..+++.|+++|+|++. +++++..+.+.|
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 421 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 754 589999999999994 78889999999999999999999999999999999999996 899999999999
Q ss_pred ChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 381 AVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 381 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
+++.|+++++++++.+++.|+++|.||+.+.
T Consensus 422 ~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 422 AVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998654
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.1e-36 Score=291.71 Aligned_cols=357 Identities=17% Similarity=0.175 Sum_probs=307.6
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.++++|++ ++++.|..|+.+|.+++.+ ++..+..+.+.|+++.|+++|+++++.++..+++++.+++..+
T Consensus 3 ~l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSS------QDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHS------SCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCC------CCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 47899999987 3567899999999999975 6667778999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc--------C--------
Q 044999 129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS--------F-------- 191 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~--------~-------- 191 (461)
++++..+.+.|+++.|+++|+ +.++.+++.|+++|++++.+++.+..+++ |+++.|+.++. +
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 899999999999999999999 88899999999999999987889998999 99999999993 2
Q ss_pred CCHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcC-------------
Q 044999 192 GSMVSRERACQAIGLLAVTGRARRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAH------------- 251 (461)
Q Consensus 192 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~------------- 251 (461)
.+.++...|+++|+||+..++.+..+.+. |+++.|+.++++ .+...++.++.+|++++..
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 24567779999999999986668889987 999999999985 4566888899999998732
Q ss_pred --------------------------------------ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccC
Q 044999 252 --------------------------------------VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVS 292 (461)
Q Consensus 252 --------------------------------------~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 292 (461)
+...+.+...|+++.|+.++.+. ++++++.|+++|.|++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 11223455667889999998754 789999999999999765
Q ss_pred ccc------HHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC------HHH
Q 044999 293 EAN------ANAIA-----EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN------DEV 355 (461)
Q Consensus 293 ~~~------~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~------~~v 355 (461)
... +..+. +.|+++|.+++++++..|+++|.|++.+++++..+. .|+++.|+++|..++ +++
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v 393 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDI 393 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHH
Confidence 432 22221 999999999999999999999999999887776665 479999999999764 368
Q ss_pred HHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCC-CHHHHHHHHHHHHHhcCCCcch
Q 044999 356 REKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDE-SEELRDNAAESLINFSEDPLQH 414 (461)
Q Consensus 356 ~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~ 414 (461)
...++++|.++.. ++++...+.+.|+++.|++++.++ ++.+++.|+++|.++..+.+-+
T Consensus 394 ~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 8899999999988 888899999999999999999998 9999999999999998877644
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.9e-35 Score=284.51 Aligned_cols=400 Identities=16% Similarity=0.139 Sum_probs=339.5
Q ss_pred CcHHHh---HHHHHHHhhcCCHHHHHHHHHHHHhhc----CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHH
Q 044999 6 TNWEEA---FNRFEQAVVSGSEALQVKALTKLARVS----KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAY 76 (461)
Q Consensus 6 ~~~~~~---~~~l~~ll~~~~~~~~~~a~~~l~~la----~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~ 76 (461)
.+|.+. ++.+++.+.++++.+|..|+..|..+. ++..+..+.. .++.|+++|++ + +++.+|..|++
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~----~-~~~~v~~~a~~ 87 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR----K-ENCTLQFESAW 87 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTC----T-TCHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCC----C-CCHHHHHHHHH
Confidence 357666 899999999999999999999999975 2222333443 79999999986 3 36789999999
Q ss_pred HHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC-CChHH
Q 044999 77 CLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS-CNDGT 155 (461)
Q Consensus 77 ~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~ 155 (461)
+|.+++.. +.+....+.+.|+++.|+++++++++.++..+++++.+++..+++.+..+.+.|+++.|+.++.+ .++.+
T Consensus 88 ~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v 166 (450)
T 2jdq_A 88 VLTNIASG-NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM 166 (450)
T ss_dssp HHHHHHSS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHH
T ss_pred HHHHHhcC-CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHH
Confidence 99999985 55666777889999999999999999999999999999998888899999999999999999995 68899
Q ss_pred HHHHHHHHHHhhCCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc
Q 044999 156 RRYLLEILSALALLR--EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI 232 (461)
Q Consensus 156 ~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~ 232 (461)
+..|+++|.+++.+. .....+. .++++.|+.++.++++.++..++++|.+++...+. ...+.+.|+++.|+.++.+
T Consensus 167 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 167 TRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp HHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence 999999999999543 3222233 78999999999999999999999999999987655 7778889999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cccHHHHH-----HHHHH
Q 044999 233 GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EANANAIA-----EHLVR 305 (461)
Q Consensus 233 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~-----~~l~~ 305 (461)
+++.++..++++|++++.. +.....+.+.|+++.|+.++.++++.++..++++|.+++.. +.....+. +.+++
T Consensus 246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS 325 (450)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999987 44556677889999999999999999999999999999864 34443333 89999
Q ss_pred HhccCCHHHHHHHHHHHHHhhC--CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Chh-----------
Q 044999 306 ILREGDNEANAAAADVLWDLAG--YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEA----------- 371 (461)
Q Consensus 306 ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~----------- 371 (461)
++.+++++++..|+++|.+++. .++....+.+.|+++.|++++.++++.++..++++|.+++. .+.
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~ 405 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP 405 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence 9999999999999999999995 45667778889999999999999999999999999999998 322
Q ss_pred hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
....+.+.|+++.|..+..+++.+++..|..+|.++..+.+
T Consensus 406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 24567788999999999988899999999999999875543
No 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.4e-34 Score=296.34 Aligned_cols=397 Identities=19% Similarity=0.258 Sum_probs=343.0
Q ss_pred HHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.+.++.|++.+.++ ++.++..|+.+|.+|+ +..++..+.+ +++.|+++|++ +++.++..|+.+|.+++..
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~------~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS------PVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCC
Confidence 36788999999865 8999999999999999 6666776766 99999999986 4578899999999999985
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh-HHHHHHHHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND-GTRRYLLEIL 163 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L 163 (461)
++..+..+.+.|+++.|++++++++..++..++.++..++..+++++..+.+.|+++.|+.++++.++ ..+..++.+|
T Consensus 265 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL 343 (780)
T 2z6g_A 265 -QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343 (780)
T ss_dssp -STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999999998888999999999999999999987765 4566788999
Q ss_pred HHhhCChHHHHHHHhcCCHHHHH---------------------------------------HHHcCCCHHHHHHHHHHH
Q 044999 164 SALALLREVRRVLICLGGLRYLV---------------------------------------EAVSFGSMVSRERACQAI 204 (461)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~l~~l~---------------------------------------~~l~~~~~~~~~~a~~~L 204 (461)
.+++.++.++..+++.|+++.|+ .++.+.++.++..|+++|
T Consensus 344 ~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99998777777777766555554 445556777888888889
Q ss_pred HHhhcCchh-HHHHHhcCChHHHHHhccc-CC-HHHHHHHHHHHHHHhcC-cc---chhhhhhcCCHHHHHHHhCCCCh-
Q 044999 205 GLLAVTGRA-RRLLVELGVIPGLVELFHI-GD-WTTKLVAGNTLGVVAAH-VE---YITPVAEAGAIPLYAELLQGPDS- 276 (461)
Q Consensus 205 ~~l~~~~~~-~~~~~~~~~i~~L~~ll~~-~~-~~~~~~a~~~L~~l~~~-~~---~~~~~~~~g~i~~L~~ll~~~~~- 276 (461)
++|+...+. +..+.+.|+++.|+.++.+ ++ ..++..|+++|++|+.. ++ .+..+...|+++.|+.++.+.+.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 998887655 7788889999999999985 33 48999999999999875 33 25677888999999999998864
Q ss_pred hHHHHHHHHHHHhccCcccHHHHH-----HHHHHHhccCC----------------------HHHHHHHHHHHHHhhCCC
Q 044999 277 TGKEISEDVFCILAVSEANANAIA-----EHLVRILREGD----------------------NEANAAAADVLWDLAGYK 329 (461)
Q Consensus 277 ~~~~~a~~~L~~l~~~~~~~~~i~-----~~l~~ll~~~~----------------------~~~~~~a~~~L~~l~~~~ 329 (461)
.++..++++|.|++..+.++..+. +.|+++|.+++ ++++..++.+|++|+.++
T Consensus 504 ~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 999999999999998888776555 78888876532 457788999999999888
Q ss_pred CchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 330 HSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 330 ~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
.++..+.+.|+++.|+.++.++++.++..++.+|.+++.+++.+..+.+.|+++.|.+++++++++++..|.++|.+++.
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88888999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred CCc
Q 044999 410 DPL 412 (461)
Q Consensus 410 ~~~ 412 (461)
+..
T Consensus 664 ~~~ 666 (780)
T 2z6g_A 664 DKP 666 (780)
T ss_dssp TSC
T ss_pred CCh
Confidence 876
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2e-34 Score=279.44 Aligned_cols=393 Identities=16% Similarity=0.145 Sum_probs=332.7
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCchhHHHHHhc-CCHHHHHhcCCCC-CHHHHHHHHHHHHHHh
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADGALATEIGQS-GVINSVLRLFPQS-DDSFRTVLVKCLRVFV 125 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~-~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~ 125 (461)
.++.+++.+++ +++.++..|+.+|..+... .++.. ..+.+. |+++.|+++|+++ ++.++..++.++.+++
T Consensus 21 ~l~~l~~~l~s------~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~ 93 (450)
T 2jdq_A 21 ITSDMIEMIFS------KSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIA 93 (450)
T ss_dssp -CHHHHHHHHS------SCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 38999999986 4677888899999998652 13333 345566 9999999999988 8999999999999999
Q ss_pred ccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHH
Q 044999 126 TFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQA 203 (461)
Q Consensus 126 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~ 203 (461)
..+++....+.+.|+++.|+++++++++.++..|+.+|.+++ .+++.+..+.+.|+++.++.++.+ .+..++..++++
T Consensus 94 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 94 SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173 (450)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHH
Confidence 888788888889999999999999999999999999999999 456788889999999999999996 689999999999
Q ss_pred HHHhhcCc-hh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHH
Q 044999 204 IGLLAVTG-RA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKE 280 (461)
Q Consensus 204 L~~l~~~~-~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 280 (461)
|++++... +. ...+. .++++.|+.++.++++.++..++++|.+++.. ++....+.+.|+++.|+.++.+.+++++.
T Consensus 174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 252 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252 (450)
T ss_dssp HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence 99999765 33 33333 78999999999999999999999999999987 56677778889999999999999999999
Q ss_pred HHHHHHHHhccCcccHHH-HH-----HHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCH
Q 044999 281 ISEDVFCILAVSEANANA-IA-----EHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGEND 353 (461)
Q Consensus 281 ~a~~~L~~l~~~~~~~~~-i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~ 353 (461)
.++.+|.+++...+.... +. +.+++++.++++.++..|+++|++++. .++....+.+.|+++.|+.++.++++
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 999999999876654332 22 999999999999999999999999996 45667778888999999999999999
Q ss_pred HHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc------------hHHHHH
Q 044999 354 EVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ------------HERISE 419 (461)
Q Consensus 354 ~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~l~~ 419 (461)
.++..++++|++++. +++....+.+.|+++.|++++.+++++++..++++|.+++...+. ...+.+
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 412 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE 412 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHH
Confidence 999999999999987 567777788999999999999999999999999999999865432 245666
Q ss_pred hhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 420 AIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 420 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
.+|.+.+..+.+ +.++.+++.+..+++.+-
T Consensus 413 ~g~~~~l~~l~~-------~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 413 AYGLDKIEFLQS-------HENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHC-------HHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHc-------CCCHHHHHHHHHHHHHHC
Confidence 677666554432 236678888877777653
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.3e-35 Score=282.76 Aligned_cols=365 Identities=15% Similarity=0.123 Sum_probs=310.6
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
...++.++.+|.++++.++..|+..|.+++ ++.++..+.+ +||.|+++|++ +++.+|..|+++|.+|+..
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s------~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH------PKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC------SSHHHHHHHHHHHHHHTSS
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC------CCHHHHHHHHHHHHHHHcc
Confidence 446899999999999999999999999999 6677887877 99999999987 4678999999999999983
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCC-CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc--------------
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQ-SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN-------------- 149 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~-------------- 149 (461)
.+.+++..+.+.|+++.|+++|++ .+..++..++.+|++|+. +++++..+.+ ++++.|++++.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC-------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccc
Confidence 247899999999999999999997 578889999999999996 5688988886 57999999761
Q ss_pred ----CCChHHHHHHHHHHHHhhC-ChHHHHHHHhcC-CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCchh----
Q 044999 150 ----SCNDGTRRYLLEILSALAL-LREVRRVLICLG-GLRYLVEAVSF------GSMVSRERACQAIGLLAVTGRA---- 213 (461)
Q Consensus 150 ----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~-~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~~~~~---- 213 (461)
..++.+++.|..+|.|++. +++.+..+.+.+ +++.|+.++++ .+...++.|+++|+||+...+.
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 2357999999999999995 556688888864 56799999874 3568899999999999976321
Q ss_pred ----------------------HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-----cchhhhhhcCCHH
Q 044999 214 ----------------------RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAHV-----EYITPVAEAGAIP 265 (461)
Q Consensus 214 ----------------------~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~g~i~ 265 (461)
...+.+.++++.|+.+++ +.++.+++.|+++|+||+... .++..+.+.+++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 112223345677888896 568999999999999998752 2344556678899
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccC--------CHHHHHHHHHHHHHhh-CCCCch
Q 044999 266 LYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREG--------DNEANAAAADVLWDLA-GYKHSV 332 (461)
Q Consensus 266 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~--------~~~~~~~a~~~L~~l~-~~~~~~ 332 (461)
.|+.+|.+++..+++.++++|.||+.++.++..|. +.|+++|.++ +.+++..|+++|.|++ .++++.
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999988887766 9999999876 4788999999999998 568899
Q ss_pred hHHhhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 044999 333 PVIRNSGAIPILVNLLRGE--NDEVREKVSGAIAQLSYNEADRVALADAGA 381 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 381 (461)
..+.+.|+++.|+.++.++ ++.+++.|+++|++++.+++.+..+.+.|.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 9999999999999999986 889999999999999999999999998775
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.7e-35 Score=280.77 Aligned_cols=354 Identities=15% Similarity=0.101 Sum_probs=301.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhc--CCCchhHHHh--hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVS--KFAPQDILAA--TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la--~~~~~~~l~~--~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
.++.++.+++++++.++..|+.+|.+++ ++..+..+.+ +||.|+++|++ +++..|..|+++|.+|+.+ +
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~-~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS------PNQNVQQAAAGALRNLVFR-S 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS------SCHHHHHHHHHHHHHHHSS-C
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-C
Confidence 5789999999999999999999999999 4455656666 99999999986 5678999999999999985 5
Q ss_pred chhHHHHHhcCCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh--------cC-------
Q 044999 87 GALATEIGQSGVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL--------NS------- 150 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll--------~~------- 150 (461)
++++..+.+.|+++.|+++|+ ++++.++..++++|.+++.. ++++..+.+ |+++.|++++ ++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 889999999999999999999 88999999999999999977 689998999 9999999999 22
Q ss_pred -CChHHHHHHHHHHHHhhCChHHHHHHHhc-CCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCc-----------
Q 044999 151 -CNDGTRRYLLEILSALALLREVRRVLICL-GGLRYLVEAVSF------GSMVSRERACQAIGLLAVTG----------- 211 (461)
Q Consensus 151 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~~~----------- 211 (461)
.++.+...|+++|.+++.+++++..+.+. |+++.|+.++.+ .+..++..++.+|++++...
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 24567779999999999778899999997 999999999986 34567788888899987321
Q ss_pred ----------------------------------------hhHHHHHhcCChHHHHHhccc-CCHHHHHHHHHHHHHHhc
Q 044999 212 ----------------------------------------RARRLLVELGVIPGLVELFHI-GDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 212 ----------------------------------------~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 250 (461)
+..+.+.+.|+++.|+.+|.+ +++.+++.|+++|+|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 112234456778889999984 478999999999999998
Q ss_pred Cccc------hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhccCC------HHH
Q 044999 251 HVEY------ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA----EHLVRILREGD------NEA 314 (461)
Q Consensus 251 ~~~~------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~~~~------~~~ 314 (461)
.... +..+.+.|++|.|++++.+++.+++..|+++|.|++.++..+..+. +.|+++|.+++ +++
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v 393 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHH
Confidence 6322 2334467999999999999999999999999999999888877665 99999998764 468
Q ss_pred HHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcCChhhH
Q 044999 315 NAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSYNEADR 373 (461)
Q Consensus 315 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~ 373 (461)
...++.+|.++.. +++....+.+.|+++.|++++.++ ++.+++.|.++|.++..+.+.|
T Consensus 394 ~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 8899999999985 567788888999999999999999 9999999999999999866543
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=274.11 Aligned_cols=353 Identities=17% Similarity=0.187 Sum_probs=282.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHHhhccCCC------CCCCcHHHHHHHHHHHHHH
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILARLLGENNF------SGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~~l~~~~~------~~~~~~~~~~~a~~~L~~l 81 (461)
.++.+...+.+.|+. ..++.|..++ ++..+..+.+ ++|.|+++|+.... ++..+++.|..|+++|.++
T Consensus 33 ~~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp ------------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 345666667676666 3677888888 7777777777 99999999996100 0003467888899999999
Q ss_pred HhcCCchhHHHHHhcCCH----------HHHHhcCCCCC--HH-----HHH-------HHHHHHHHHhccChhhHHHHHH
Q 044999 82 ASQADGALATEIGQSGVI----------NSVLRLFPQSD--DS-----FRT-------VLVKCLRVFVTFGNENRVIVAR 137 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l----------~~L~~ll~~~~--~~-----~~~-------~~~~~l~~l~~~~~~~~~~~~~ 137 (461)
+.+ .++......+.+.+ +.+++++.+.. .+ ++. +|+++|.+++. ++++|..+.+
T Consensus 110 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~ 187 (458)
T 3nmz_A 110 IHS-QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNE 187 (458)
T ss_dssp HHH-SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred Hcc-CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 997 44444555566666 55666666542 11 333 89999999985 5899999999
Q ss_pred cCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCC-hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999 138 NGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALL-REVRRVLICL-GGLRYLVEAVSFGSMVSRERACQAI 204 (461)
Q Consensus 138 ~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L 204 (461)
.|+++.|+.++.. .++.++..|+++|.+++.+ ++.+..+... |.++.|+.+|.+++++++..|+++|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999952 2357899999999999954 4466666554 5599999999999999999999999
Q ss_pred HHhhcC-c-hhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHHHHHhc-Cccchhhhh-hcCCHHHHHHHhCCCCh---
Q 044999 205 GLLAVT-G-RARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTLGVVAA-HVEYITPVA-EAGAIPLYAELLQGPDS--- 276 (461)
Q Consensus 205 ~~l~~~-~-~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~-~~g~i~~L~~ll~~~~~--- 276 (461)
+||+.. + +++..+.+.|+++.|+.+| .+.++.+++.++.+|+||+. .++++..+. ..|+++.|+.++.+.+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 999985 3 4588899999999999975 56788999999999999999 567888888 78999999999987754
Q ss_pred -hHHHHHHHHHHHhcc----CcccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHH
Q 044999 277 -TGKEISEDVFCILAV----SEANANAIA-----EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILV 345 (461)
Q Consensus 277 -~~~~~a~~~L~~l~~----~~~~~~~i~-----~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~ 345 (461)
++++.++++|.|++. .++++..+. +.|+.+|++++.++++.|+++|+|++ .+++++..+.+.|+++.|+
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 489999999999984 677777665 99999999999999999999999999 5688999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcC
Q 044999 346 NLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 346 ~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
+++.++++.+++.|+++|.||+.
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=5.3e-31 Score=242.65 Aligned_cols=260 Identities=20% Similarity=0.234 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCchh-HHHHHh-c
Q 044999 154 GTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSF-----------GSMVSRERACQAIGLLAVTGRA-RRLLVE-L 220 (461)
Q Consensus 154 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~-----------~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~ 220 (461)
.....|+++|.+++.++++|..+++.|+++.|+.+|.. .+++++..|+++|.|++..++. +..+.. .
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 55668999999999999999999999999999999952 2468999999999999988875 666655 4
Q ss_pred CChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhcc-CcccH
Q 044999 221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAV-SEANA 296 (461)
Q Consensus 221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~-~~~~~ 296 (461)
|+++.|+.+|+++++++++.|+++|+||+.. ++++..+.+.|++|.|+++ +++.++++++.++.+|.||+. .++++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5699999999999999999999999999985 5688999999999999997 466789999999999999998 66777
Q ss_pred HHHH------HHHHHHhccCCH----HHHHHHHHHHHHhhC----CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 044999 297 NAIA------EHLVRILREGDN----EANAAAADVLWDLAG----YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGA 362 (461)
Q Consensus 297 ~~i~------~~l~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~ 362 (461)
..+. +.|+++|+++++ ++++.|+++|+|++. +++++..+.+.|+++.|+++|.+++..+++.|+++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 6665 999999987754 589999999999995 78889999999999999999999999999999999
Q ss_pred HHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999 363 IAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 363 L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
|+||+. +++++..+.+.|++|.|+++++++++.+++.|+++|.||+.+...
T Consensus 287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999996 899999999999999999999999999999999999999877543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5e-30 Score=236.13 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 044999 71 QQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ-----------SDDSFRTVLVKCLRVFVTFGNENRVIVARNG 139 (461)
Q Consensus 71 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g 139 (461)
+..|+++|.+++. +++++..+.+.|+++.|+++|.. .++.++..++++|.+++..+..++..+...+
T Consensus 49 ~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 49 ICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp HHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 3359999999999 78999999999999999999952 2467899999999999988877888886654
Q ss_pred -CHHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCc-hhH
Q 044999 140 -GLEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLAVTG-RAR 214 (461)
Q Consensus 140 -~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~-~~~ 214 (461)
.++.|+++|+++++++++.|+.+|.+++. +++++..+.+.|+++.|+++| .+.+.++++.++.+|+||+... +++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 49999999999999999999999999995 477899999999999999975 6678899999999999999944 557
Q ss_pred HHHH-hcCChHHHHHhcccCCH----HHHHHHHHHHHHHhc----CccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999 215 RLLV-ELGVIPGLVELFHIGDW----TTKLVAGNTLGVVAA----HVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285 (461)
Q Consensus 215 ~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 285 (461)
..+. ..|+++.|+.++.++++ ++++.|+++|+|++. .++++..+.+.|+++.|+.+|++++.++++
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~----- 281 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS----- 281 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH-----
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH-----
Confidence 7777 79999999999996654 589999999999996 588899999999999999999988888877
Q ss_pred HHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 044999 286 FCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIA 364 (461)
Q Consensus 286 L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~ 364 (461)
.|+++|+|++ .+++++..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus 282 -------------------------------~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 282 -------------------------------NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp -------------------------------HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777777 45778888999999999999999999999999999999
Q ss_pred HhcC
Q 044999 365 QLSY 368 (461)
Q Consensus 365 ~l~~ 368 (461)
+|+.
T Consensus 331 nL~~ 334 (354)
T 3nmw_A 331 NLMA 334 (354)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9999
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-27 Score=228.20 Aligned_cols=389 Identities=15% Similarity=0.130 Sum_probs=307.8
Q ss_pred HHhHHHHHHHhhc-CCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 9 EEAFNRFEQAVVS-GSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 9 ~~~~~~l~~ll~~-~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
++..+.+.+.+.+ .+..+.......|...| +...|..+.+ .++-|.+.++. + .++..|+..|+.+...+
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~-----~---~ir~lAavvL~KL~~~~ 325 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV-----E---DVQIYSALVLVKTWSFT 325 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-----G---GGHHHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-----H---HHHHHHHHHHHHHhcCC
Confidence 3445666666654 45666677777888888 7778888877 88999988864 2 26777999999998752
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHc-CCHHHHHHHhcC-CChHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARN-GGLEIVIDLLNS-CNDGTRRYLLEIL 163 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L 163 (461)
.. ....+ ....+.+.+++.+++.+.+..++..|..++. +++.|..+++. |.++.|++++++ .+..+...++.+|
T Consensus 326 ~~-~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL 401 (778)
T 3opb_A 326 KL-TCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401 (778)
T ss_dssp TC-TTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHH
T ss_pred CC-CcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 11 11111 1245677788888777779999999999995 45778777765 459999999985 6778999999999
Q ss_pred HHhhCChH---------------------------------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999 164 SALALLRE---------------------------------------VRRVLICLGGLRYLVEAVSFGSMVSRERACQAI 204 (461)
Q Consensus 164 ~~l~~~~~---------------------------------------~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L 204 (461)
.|++...+ ++..+.+.|+++.|+.++.++++.++..++++|
T Consensus 402 ~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL 481 (778)
T 3opb_A 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII 481 (778)
T ss_dssp HHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99984221 345667889999999999999999999999999
Q ss_pred HHhhcCchhHHHHHhcCChHHHHHhcccCCHH---HHHHHHHHHHHHhcCccchhhhhh---cCCHHHHHHHhCC-CCh-
Q 044999 205 GLLAVTGRARRLLVELGVIPGLVELFHIGDWT---TKLVAGNTLGVVAAHVEYITPVAE---AGAIPLYAELLQG-PDS- 276 (461)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~---~g~i~~L~~ll~~-~~~- 276 (461)
.+++.+.+++..+++.|+++.|+.++.+.+.. .+..|+.+|.+++...+....+.. .|+++.|+.+|.. +..
T Consensus 482 ~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~ 561 (778)
T 3opb_A 482 YNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561 (778)
T ss_dssp HHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcc
Confidence 99999988899999999999999999977554 899999999999976433332211 3889999999983 211
Q ss_pred ------------hHHHHHHHHHHHhccCcc-----cHHHHH------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCch-
Q 044999 277 ------------TGKEISEDVFCILAVSEA-----NANAIA------EHLVRILREGDNEANAAAADVLWDLAGYKHSV- 332 (461)
Q Consensus 277 ------------~~~~~a~~~L~~l~~~~~-----~~~~i~------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~- 332 (461)
--+..|+.+|.||+..++ .+..++ +.+.+++.++++.++..|+++++||+.+++..
T Consensus 562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~ 641 (778)
T 3opb_A 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIA 641 (778)
T ss_dssp SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 127789999999988763 244444 88999999999999999999999999988764
Q ss_pred hHHhhcC------CHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhC-CChHHHHHhccC--CCHHHHHHHHH
Q 044999 333 PVIRNSG------AIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADA-GAVPIMIELLHD--ESEELRDNAAE 402 (461)
Q Consensus 333 ~~l~~~g------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~-~~i~~L~~ll~~--~~~~~~~~a~~ 402 (461)
..+...+ .++.|+.++..++.++|..|+++|++++. ++.....+.+. ++++.++.++++ ++++++..++.
T Consensus 642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~ 721 (778)
T 3opb_A 642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLM 721 (778)
T ss_dssp GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence 3444322 37899999999999999999999999975 88888888887 799999999988 89999999999
Q ss_pred HHHHhcC
Q 044999 403 SLINFSE 409 (461)
Q Consensus 403 ~L~~l~~ 409 (461)
++.|++.
T Consensus 722 ~l~NL~~ 728 (778)
T 3opb_A 722 LFFGLFE 728 (778)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999986
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-26 Score=224.13 Aligned_cols=411 Identities=14% Similarity=0.065 Sum_probs=307.9
Q ss_pred HHHHHHHhhc--CCCchhHHHh---hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHH
Q 044999 29 KALTKLARVS--KFAPQDILAA---TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVL 103 (461)
Q Consensus 29 ~a~~~l~~la--~~~~~~~l~~---~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~ 103 (461)
.+..++..+- -+.....+.- ..+.+.+.+.+ + .+......++..|...|. ++.++..+ ..++++.|.
T Consensus 231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~----~-~~~~~~~a~L~lLsaACi--~~~cR~~I-~~~~~~~L~ 302 (778)
T 3opb_A 231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE----E-QDLQFTKELLRLLSSACI--DETMRTYI-TENYLQLLE 302 (778)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS----S-CCHHHHHHHHHHHHHHCC--SHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc----c-cchHHHHHHHHHHHHHhC--CcHHHHHH-HHhHHHHHH
Confidence 3444444444 3333333332 67777777765 3 234445556666666665 77787666 566779999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc-CCH
Q 044999 104 RLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL-GGL 182 (461)
Q Consensus 104 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l 182 (461)
+.+++ ..++..++..+..+..........+.+ ..+.+.+++.+++.+.+..|++.|..++.+++.++.+.+. +++
T Consensus 303 ~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~--La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L 378 (778)
T 3opb_A 303 RSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ--LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFT 378 (778)
T ss_dssp HHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH--HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHH
T ss_pred HHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHH
Confidence 99876 466888888888776543222111211 4566777888877667999999999999999999998875 569
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHhhcCch---------------------------------------hHHHHHhcCC
Q 044999 183 RYLVEAVSF-GSMVSRERACQAIGLLAVTGR---------------------------------------ARRLLVELGV 222 (461)
Q Consensus 183 ~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~---------------------------------------~~~~~~~~~~ 222 (461)
+.|+.++++ .+..+.+.++.+|.|++...+ .+..+.+.|+
T Consensus 379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence 999999995 677899999999999987443 2345677899
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChh---HHHHHHHHHHHhccCcccHH--
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDST---GKEISEDVFCILAVSEANAN-- 297 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~-- 297 (461)
++.|+.++.++++.+++.++++|.+++.++++|..+++.|+++.|+.++.+.+.. .+..|+.+|.++....+...
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f 538 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHc
Confidence 9999999999999999999999999999999999999999999999999887543 89999999999964333222
Q ss_pred ------HHHHHHHHHhcc--CCH------------HHHHHHHHHHHHhhCCCC-----chhHHhhc-CCHHHHHHhhcCC
Q 044999 298 ------AIAEHLVRILRE--GDN------------EANAAAADVLWDLAGYKH-----SVPVIRNS-GAIPILVNLLRGE 351 (461)
Q Consensus 298 ------~i~~~l~~ll~~--~~~------------~~~~~a~~~L~~l~~~~~-----~~~~l~~~-g~i~~L~~ll~~~ 351 (461)
..+++|+.+|.. ... -.+..|+.+|.||+..++ .+..+++. |+++.|.+++.+.
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~ 618 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence 222999999972 211 237799999999998763 36778885 9999999999999
Q ss_pred CHHHHHHHHHHHHHhcCChhhH-HHHHhCC------ChHHHHHhccCCCHHHHHHHHHHHHHhc-CCCcchHHHHHh-hC
Q 044999 352 NDEVREKVSGAIAQLSYNEADR-VALADAG------AVPIMIELLHDESEELRDNAAESLINFS-EDPLQHERISEA-IG 422 (461)
Q Consensus 352 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~------~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~-~~ 422 (461)
++.+++.|+++++||+.+++.. ..+.+.+ .++.|+.++.+++.++|..|+++|.|++ .++.....+.+. ++
T Consensus 619 n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~g 698 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698 (778)
T ss_dssp SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcccc
Confidence 9999999999999999987754 3443322 3789999999999999999999999995 566655566554 45
Q ss_pred CchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 423 IPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 423 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++.+..+++ ..+ +++.++..+-..++++.
T Consensus 699 i~~Ll~lL~---~~~--~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 699 IENAIQVFA---DQI--DDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHH---HTT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccC--CCHHHHHHHHHHHHHHH
Confidence 555554444 222 46677777777777776
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.1e-26 Score=204.97 Aligned_cols=239 Identities=23% Similarity=0.338 Sum_probs=217.1
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL 216 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 216 (461)
|+++.|++++.++++.++..|+.+|.+++ .+++.+..+.+.|+++.++.++.+++++++..++++|++++...+. +..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999 5566899999999999999999999999999999999999998554 889
Q ss_pred HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
+.+.|+++.|+.++++++++++..++++|.+++.. ++.+..+.+.|+++.++.+++++++.++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~--------------- 146 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK--------------- 146 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHH---------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH---------------
Confidence 99999999999999999999999999999999954 88888999999999999999988888887
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhH
Q 044999 296 ANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADR 373 (461)
Q Consensus 296 ~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~ 373 (461)
.++++|++++.. +.....+.+.|+++.|+.++.++++.++..++++|++++. ++..+
T Consensus 147 ---------------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 147 ---------------------EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp ---------------------HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred ---------------------HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 666666666653 4445677889999999999999999999999999999999 88889
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999 374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
..+.+.|+++.|+++++++++.++..|+++|.||+..+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999877654
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.7e-26 Score=201.63 Aligned_cols=238 Identities=20% Similarity=0.282 Sum_probs=220.7
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.++++|++ ++++++..|+++|.+++.. ++..+..+.+.|+++.|+++++++++.++..++.++.+++..+
T Consensus 3 ~i~~L~~~L~~------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTS------TDSETQKEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHcC------CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 47899999986 4578888999999999985 5568889999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL 207 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 207 (461)
++++..+.+.|+++.++.++++.++.++..|+.+|.+++ .+++.+..+.+.|+++.+++++.++++.++..++++|+++
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999 208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285 (461)
Q Consensus 208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 285 (461)
+...+. +..+.+.|+++.|+.++.++++.++..++++|.+++.. ++.+..+.+.|+++.|+.+++++++++++.|+++
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 997776 68889999999999999999999999999999999986 7778888899999999999999999999999999
Q ss_pred HHHhccCc
Q 044999 286 FCILAVSE 293 (461)
Q Consensus 286 L~~l~~~~ 293 (461)
|.|++...
T Consensus 236 L~~l~~~~ 243 (252)
T 4hxt_A 236 LENIKSGG 243 (252)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99986544
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.6e-26 Score=204.31 Aligned_cols=235 Identities=23% Similarity=0.276 Sum_probs=212.2
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL 216 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 216 (461)
..++.+++.|.++++.++..|+..|.++. .+++.+..+.+.|+++.|+.++.+++++++..++++|++++...+. +..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46889999999999999999999997765 6777788899999999999999999999999999999999986554 889
Q ss_pred HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch-hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI-TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
+.+.|+++.|+.+++++++.++..++++|++++.+++.+ ..+.+.|+++.|+.++.++++.++.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~--------------- 156 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ--------------- 156 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHH---------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHH---------------
Confidence 999999999999999999999999999999999997777 8888999999999999988888887
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhH
Q 044999 296 ANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADR 373 (461)
Q Consensus 296 ~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~ 373 (461)
.|+++|++++.. ++....+.+.|+++.|++++.++++.++..++++|++++. +++.+
T Consensus 157 ---------------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 215 (252)
T 4db8_A 157 ---------------------EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215 (252)
T ss_dssp ---------------------HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ---------------------HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 666666666643 4556677889999999999999999999999999999997 88889
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
..+.+.|+++.|++++++++++++..|+++|.+|+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999975
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=5.6e-26 Score=202.18 Aligned_cols=236 Identities=21% Similarity=0.216 Sum_probs=216.1
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
..+.+++.|++ +|+++|..|+++|.++... +......+.+.|+++.|+++|+++++.++..++.++.+++..+
T Consensus 13 ~~~~~~~~L~s------~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 13 ELPQMTQQLNS------DDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp SHHHHHHHHHS------SCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHcC------CCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 57889999987 3456899999999877664 6677888999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL 207 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 207 (461)
++++..+.+.|+++.|+.+++++++.++..|+.+|.+++.+++.+ ..+.+.|+++.|+.++.++++.++..++++|+++
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999877777 8899999999999999999999999999999999
Q ss_pred hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHH
Q 044999 208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDV 285 (461)
Q Consensus 208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~ 285 (461)
+...+. ...+.+.|+++.|+.++.++++.++..++++|++++.. ++.+..+.+.|+++.|+.++.+.+++++..|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 987766 77888999999999999999999999999999999976 6778888899999999999999999999999999
Q ss_pred HHHhcc
Q 044999 286 FCILAV 291 (461)
Q Consensus 286 L~~l~~ 291 (461)
|.|++.
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 998864
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=9.1e-23 Score=176.00 Aligned_cols=197 Identities=22% Similarity=0.200 Sum_probs=183.8
Q ss_pred hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHH
Q 044999 95 QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVR 173 (461)
Q Consensus 95 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~ 173 (461)
..++.+.|+++++++++.++..+++++.+++..+++.+..+.+.|+++.|+++|+++++.++..|+.+|.+++ .+++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4578899999999999999999999999999888899999999999999999999999999999999999999 678889
Q ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-
Q 044999 174 RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH- 251 (461)
Q Consensus 174 ~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~- 251 (461)
..+.+.|+++.++.++.++++.++..|+++|++++...+. ...+.+.|+++.|+.++.++++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999987766 77888999999999999999999999999999999998
Q ss_pred ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 252 VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 252 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
++.+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 7888889999999999999999999999999999998864
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=9.6e-22 Score=169.56 Aligned_cols=195 Identities=22% Similarity=0.214 Sum_probs=181.8
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
..+.|+.+|++ +|+.++..|+++|.+++.. ++..+..+.+.|+++.|+++|+++++.++..+++++.+++..+
T Consensus 13 ~~~~l~~LL~s------~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQLNS------PDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHhcC------CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 67889999986 5678999999999999975 7788889999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 044999 129 NENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLL 207 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 207 (461)
++++..+.+.|+++.|+.++++.++.++..|+.+|.+++ .+++.+..+.+.|+++.|+.++.++++.++..++++|+++
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 6677778889999999999999999999999999999999
Q ss_pred hcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 208 AVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 208 ~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
+...+. +..+.+.|+++.|+.++.++++++++.|+.+|.+++.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 998555 8888999999999999999999999999999999985
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=4.7e-22 Score=170.18 Aligned_cols=194 Identities=13% Similarity=0.159 Sum_probs=172.8
Q ss_pred CHHHHHhcCCCCCH--HHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChHHHH
Q 044999 98 VINSVLRLFPQSDD--SFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LREVRR 174 (461)
Q Consensus 98 ~l~~L~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~ 174 (461)
.++.++++|+++++ +++..++.++.+++..+++++..+.+.|+++.|+++|+++++.+++.|+++|.+++. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999988 888899999999999898999999999999999999999999999999999999995 789999
Q ss_pred HHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc----------------cCCHHH
Q 044999 175 VLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH----------------IGDWTT 237 (461)
Q Consensus 175 ~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~ 237 (461)
.+.+.|+++.|+++|. +++.++++.++.+|++|+..+..+..+.+. +++.|+.++. ..++++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 468999999999999999998888888775 6899988663 126689
Q ss_pred HHHHHHHHHHHhcC-ccchhhhhhc-CCHHHHHHHhCCC------ChhHHHHHHHHHHHhccC
Q 044999 238 KLVAGNTLGVVAAH-VEYITPVAEA-GAIPLYAELLQGP------DSTGKEISEDVFCILAVS 292 (461)
Q Consensus 238 ~~~a~~~L~~l~~~-~~~~~~~~~~-g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~ 292 (461)
++.|..+|+||+.. +++|..+.+. |+|+.|+.+++.. +...+++|..+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999986 6899999886 6789999998742 557889999999988764
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=170.08 Aligned_cols=197 Identities=18% Similarity=0.190 Sum_probs=173.4
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG 128 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~ 128 (461)
.++.++++|++ +++++++|..|+.+|.+++.. ++.++..+.+.|+++.|+++|++++++++..++++|.+++..+
T Consensus 9 ~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEA----DHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 68999999997 554457888899999999975 7889999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc----------------C
Q 044999 129 NENRVIVARNGGLEIVIDLLN-SCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS----------------F 191 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~----------------~ 191 (461)
++++..+.+.|+++.|+++|. +.+..+++.|+.+|++++..++++..+.+. +++.|+.++. .
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccccc
Confidence 899999999999999999998 578899999999999999999999888874 6888887552 1
Q ss_pred CCHHHHHHHHHHHHHhhcCc-hhHHHHHhc-CChHHHHHhccc------CCHHHHHHHHHHHHHHhcC
Q 044999 192 GSMVSRERACQAIGLLAVTG-RARRLLVEL-GVIPGLVELFHI------GDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 192 ~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~ 251 (461)
.+.++++.|..+|+||+..+ +.|+.|.+. |+++.|+.+++. .+...++.++.+|+||+..
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 26799999999999999876 458889885 668999999984 2568999999999999875
No 37
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.87 E-value=3.3e-19 Score=178.46 Aligned_cols=419 Identities=13% Similarity=0.078 Sum_probs=307.2
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
+++.++.+..++.++++.+|..|+.+++.++ ...........+|.+..+++. +++.++..|+.+|..++..-+
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d------~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD------EQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTC------SCHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHhCC
Confidence 5667788888889999999999999999999 444333333388888888875 446677779999999987411
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l 166 (461)
+ .......++.+.+++++.++.++..++.++..++..... .......++.+..++++.++.+|..|+.++..+
T Consensus 236 ~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 236 Q----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp H----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 1 112334678888899999999999999999988752211 123345688999999999999999999999998
Q ss_pred hC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 167 AL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 167 ~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
+. .++.+....-...++.+..++++.++.+|..++.+++.++..-.... .....++.+..++++++++++..++.+
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~ 386 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHLLPLFLAQLKDECPEVRLNIISN 386 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 83 22222222334578888999999999999999999999875433221 123478889999999999999999999
Q ss_pred HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC--c-ccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS--E-ANANAIAEHLVRILREGDNEANAAAADV 321 (461)
Q Consensus 245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~-~~~~~i~~~l~~ll~~~~~~~~~~a~~~ 321 (461)
+..+...-... .....++|.+..++.+.++.+|..++.++..++.. + .....+.+.+...+.+.++.+|..|+.+
T Consensus 387 l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~ 464 (588)
T 1b3u_A 387 LDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464 (588)
T ss_dssp CHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 98887641111 11234588899999999999999999999988532 1 1223455889999999999999999999
Q ss_pred HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999 322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA 401 (461)
Q Consensus 322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 401 (461)
+..++..-... .....++|.|..++.+++..+|..++.++..++..-+ ........+|.|..+++++++.+|..++
T Consensus 465 l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 465 LKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 99998542211 2234688889999888899999999999999986221 1122335789999999999999999999
Q ss_pred HHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHhhhc
Q 044999 402 ESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIEQLT 456 (461)
Q Consensus 402 ~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++|..+...-+.. +.. +.+...+. ++..+.+..+|..+..++..+.
T Consensus 541 ~~l~~l~~~~~~~--~~~----~~~~p~l~---~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 541 KSLQKIGPILDNS--TLQ----SEVKPILE---KLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGSCHH--HHH----HHHHHHHH---HHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchh--hhH----HHHHHHHH---HHcCCCchhHHHHHHHHHHHhh
Confidence 9999998653321 111 22222222 2334457889999998887764
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=2.9e-20 Score=166.54 Aligned_cols=180 Identities=15% Similarity=0.103 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHh-cCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh
Q 044999 70 IQQAAAYCLKQIASQADGALATEIGQSGVINSVLR-LFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL 148 (461)
Q Consensus 70 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll 148 (461)
....|+..|..++. +.++...+.+.|+++.+++ +|+++++.++..+++++.+++..++.++..+.+.|+++.|+.+|
T Consensus 56 ~k~~Al~~L~~lv~--~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 44449999999998 7778888999999999999 99999999999999999999999999999999999999999999
Q ss_pred cC-CChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHH
Q 044999 149 NS-CNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPG 225 (461)
Q Consensus 149 ~~-~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~ 225 (461)
++ +++.++..|+++|.+++ .+++..+.+.+.|+++.|+.+|.+++..++..|+++|.+++...+. +..+.+.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 86 47899999999999999 5667778899999999999999999999999999999999887655 889999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 226 LVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 226 L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
|+.+|.+++..+++.++.+|+++...
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999987
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.8e-20 Score=167.82 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh
Q 044999 194 MVSRERACQAIGLLAVTGRARRLLVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL 271 (461)
Q Consensus 194 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll 271 (461)
.+-+..|+..|.+++...++...+...|+++.|+. +|.++++.++..|+++|++++.+ +..+..+++.|+++.|+.++
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 36788999999999999888888899999999999 99999999999999999999987 77888999999999999999
Q ss_pred CCC-ChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc
Q 044999 272 QGP-DSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR 349 (461)
Q Consensus 272 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~ 349 (461)
+++ +..+++ .|+++|.+++.+ +...+.+.+.|+++.|+.+++
T Consensus 134 ~~~~~~~v~~------------------------------------~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~ 177 (296)
T 1xqr_A 134 DRDACDTVRV------------------------------------KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177 (296)
T ss_dssp HHCSCHHHHH------------------------------------HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccCCCHHHHH------------------------------------HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 853 666766 777777788754 455667888999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 350 GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 350 ~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
++++.++..|+++|.+++. +++.+..+++.|+++.|+.++.++++.++..++.+|.+|+...
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 9999999999999999998 8899999999999999999999999999999999999998774
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.83 E-value=7.4e-16 Score=147.49 Aligned_cols=440 Identities=13% Similarity=0.102 Sum_probs=310.5
Q ss_pred cHHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 7 NWEEAFNRFEQAVVSG-SEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
.-++.++.|..-+++. -.+-|+.|+..|..++. +.+..+.. +++.|+..|+. +.+|.+..+.+..+|.++...
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk-~y~~~Vg~~~l~~li~~L~~----d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSK-KYRLEVGIQAMEHLIHVLQT----DRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT-TTTTHHHHHTHHHHHHHHHS----CTTCHHHHHHHHHHHHHHHCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhHHHhhhhhHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCC
Confidence 4678888888877765 46889999999999992 33445555 99999999998 888999999999999998764
Q ss_pred CCch----------------hHHHH-HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChh-hHHHHHHc-CCHHHHH
Q 044999 85 ADGA----------------LATEI-GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNE-NRVIVARN-GGLEIVI 145 (461)
Q Consensus 85 ~~~~----------------~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~-g~i~~L~ 145 (461)
++++ +.+.+ .+.+.++.|+.+|++.+..++..+..++..++...++ .++.+... +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 2211 22233 3457799999999999999999999999988887766 78888854 9999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhcCchh-HHHHHh
Q 044999 146 DLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM----VSRERACQAIGLLAVTGRA-RRLLVE 219 (461)
Q Consensus 146 ~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~a~~~L~~l~~~~~~-~~~~~~ 219 (461)
.+|++..+.+|..++..|.+++ .+.+.++.+.-.|+++.|+.++..+.. .+...++.++.+|...+.. +..|.+
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999 566666666778999999999987643 7889999999999999885 999999
Q ss_pred cCChHHHHHhcccCCHH------HH---HHHHHHHHHHhcC-------ccchhhhhhcCCHHHHHHHhCCC--ChhHHHH
Q 044999 220 LGVIPGLVELFHIGDWT------TK---LVAGNTLGVVAAH-------VEYITPVAEAGAIPLYAELLQGP--DSTGKEI 281 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~------~~---~~a~~~L~~l~~~-------~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~ 281 (461)
.|+++.|..++..+++. .. ..++.+++-+... ..++..+.+.|+++.+++++.+. ...++..
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 99999999999844321 11 2355556665543 24577888999999999998765 6788999
Q ss_pred HHHHHHHhc-cCcccHHHHH----------HH----HHHHhccC-CHHHHHHHHHHHHHhhC-CCCchhHHhhc------
Q 044999 282 SEDVFCILA-VSEANANAIA----------EH----LVRILREG-DNEANAAAADVLWDLAG-YKHSVPVIRNS------ 338 (461)
Q Consensus 282 a~~~L~~l~-~~~~~~~~i~----------~~----l~~ll~~~-~~~~~~~a~~~L~~l~~-~~~~~~~l~~~------ 338 (461)
|+.+++.+. .++.++..+. +. ++.++.+. ...+|.+|+.++..... +++.+..+..+
T Consensus 333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~ 412 (651)
T 3grl_A 333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTI 412 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccc
Confidence 999999985 4555566655 33 44445544 57899999999998885 44455455432
Q ss_pred ----CC---HHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhC-----------CChHHHHHhcc-CCCHHHHH
Q 044999 339 ----GA---IPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADA-----------GAVPIMIELLH-DESEELRD 398 (461)
Q Consensus 339 ----g~---i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~-----------~~i~~L~~ll~-~~~~~~~~ 398 (461)
+. -..|..-+.+.++.-.-.|+.++.++-. +++.|+.+.+- -.++.+..++. +.++.++.
T Consensus 413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~v 492 (651)
T 3grl_A 413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRV 492 (651)
T ss_dssp CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHH
T ss_pred ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHH
Confidence 00 1124444555566444457777888888 88888777651 12455566553 35566655
Q ss_pred HHHHHHHHh-cCCCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999 399 NAAESLINF-SEDPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIE 453 (461)
Q Consensus 399 ~a~~~L~~l-~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 453 (461)
.-...|... ..+|.....|...+ +.++.++..+.+...+.+..++=.+.+.+.
T Consensus 493 gyL~LL~~WL~e~p~AV~dFL~~~--s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG 546 (651)
T 3grl_A 493 GLLMLLCTWLSNCPIAVTHFLHNS--ANVPFLTGQIAENLGEEEQLVQGLCALLLG 546 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHST--THHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHcCC--chHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 444444433 44454444444322 234444443321111124556655555543
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=7e-18 Score=168.82 Aligned_cols=380 Identities=13% Similarity=0.146 Sum_probs=283.2
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
+.+.++.+..++++++..+|..|+.+++.++ ... ...... .+|.+.+++.. ++..++..++.+|..++..-
T Consensus 201 ~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~d------~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 201 KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-QEDLEALVMPTLRQAAED------KSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-HHHHHHHTHHHHHHHHTC------SSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHccC------CCHHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999999999 332 233334 88888888864 45667777999999998730
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh-hhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN-ENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILS 164 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 164 (461)
.+ .......++.+.++++++++.++..++.++..++.... +.+........++.+..++++.++.+|..++.+|.
T Consensus 274 ~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 274 GP----EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349 (588)
T ss_dssp CH----HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred Cc----ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11 12234568899999999999999999999998876322 22222233456788889999999999999999999
Q ss_pred HhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHH
Q 044999 165 ALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNT 244 (461)
Q Consensus 165 ~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 244 (461)
.++..-... ......++.+..++++.++++|..++.++..+........ .....++.+..++.+.++.++..++.+
T Consensus 350 ~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~ 425 (588)
T 1b3u_A 350 GLSPILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp GGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 887321111 1123478889999999999999999999988865433211 123467888888889999999999999
Q ss_pred HHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH---HHHHHHHHHHhccCCHHHHHHHHHH
Q 044999 245 LGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA---NAIAEHLVRILREGDNEANAAAADV 321 (461)
Q Consensus 245 L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~l~~ll~~~~~~~~~~a~~~ 321 (461)
+..++..-.. ......+++.+..++.+.++.+|..++.++..+....... ..+.+.+..++.+.++.+|..++.+
T Consensus 426 l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 426 MPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503 (588)
T ss_dssp HHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 9998864111 1122345888999999999999999999999986433222 2333888888888899999999999
Q ss_pred HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHH
Q 044999 322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAA 401 (461)
Q Consensus 322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~ 401 (461)
+..++..-. .......+++.|..++.++++.+|..++++|..++..-+. .+.....+|.|..++.+.++++|..|+
T Consensus 504 l~~l~~~~~--~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~d~d~~vr~~a~ 579 (588)
T 1b3u_A 504 INVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQDQDVDVKYFAQ 579 (588)
T ss_dssp HHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcCCCchhHHHHHH
Confidence 999985311 1223346889999999999999999999999999972211 122234578888888899999999999
Q ss_pred HHHHHhc
Q 044999 402 ESLINFS 408 (461)
Q Consensus 402 ~~L~~l~ 408 (461)
.++..+.
T Consensus 580 ~al~~l~ 586 (588)
T 1b3u_A 580 EALTVLS 586 (588)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9998875
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=6.5e-18 Score=176.25 Aligned_cols=385 Identities=12% Similarity=0.042 Sum_probs=268.7
Q ss_pred HHHHHh---hcCCHHHHHHHHHHHHhhc-C-CC-chhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 14 RFEQAV---VSGSEALQVKALTKLARVS-K-FA-PQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 14 ~l~~ll---~~~~~~~~~~a~~~l~~la-~-~~-~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
.+..++ .+.++.+|..|+..|.+.. . .. .....+. +-+.+++.|.. +++.++..++.++..++.. +
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~------~~~~vr~~~a~~i~~ia~~-~ 121 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD------SSPLIRATVGILITTIASK-G 121 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTC------SSHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHh-c
Confidence 444555 3567888998988888776 2 11 1112222 55566666754 4566777799999999974 2
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHH----HcCCHHHHHHHhcCCChHHHHHHHHH
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVA----RNGGLEIVIDLLNSCNDGTRRYLLEI 162 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~ 162 (461)
... .-.+.++.|++.+.++++.++..+..++..++...+.....-. -...++.+++++++.++.+|..|+.+
T Consensus 122 ~~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a 197 (852)
T 4fdd_A 122 ELQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 197 (852)
T ss_dssp TTT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred Ccc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 110 1134689999999999999999999999988864322211000 12356677777888899999999999
Q ss_pred HHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccCCHHHHHH
Q 044999 163 LSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIGDWTTKLV 240 (461)
Q Consensus 163 L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~ 240 (461)
+.++.........-.-.+.++.++..+.++++++|..++.+|..++...+. ...+ .++++.++..+.+.++.++..
T Consensus 198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~ 275 (852)
T 4fdd_A 198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALE 275 (852)
T ss_dssp HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHH
Confidence 998874322111001124678888889999999999999999999876654 2222 247788888888999999999
Q ss_pred HHHHHHHHhcCccchhhhhh--cCCHHHHHHHh-----------CC-----------CChhHHHHHHHHHHHhccCc--c
Q 044999 241 AGNTLGVVAAHVEYITPVAE--AGAIPLYAELL-----------QG-----------PDSTGKEISEDVFCILAVSE--A 294 (461)
Q Consensus 241 a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll-----------~~-----------~~~~~~~~a~~~L~~l~~~~--~ 294 (461)
|+.++..++.....+..+.. ...+|.++..+ .+ .++.++..+..+|..++... .
T Consensus 276 a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~ 355 (852)
T 4fdd_A 276 ACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE 355 (852)
T ss_dssp HHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH
Confidence 99999999876433332211 14567777776 23 23457889999999886433 2
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-hhhH
Q 044999 295 NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYN-EADR 373 (461)
Q Consensus 295 ~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~ 373 (461)
....+.+.+...+.+.++.+|..|+.+|++++......-.-.-.++++.++.++.++++.|+..+++++++++.. ....
T Consensus 356 ~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 356 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 333444888888999999999999999999997543211122346789999999999999999999999999872 1110
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
..-.-.+.++.|++.+.++++.++..|+++|.+++...
T Consensus 436 ~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 436 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 00111245788888888899999999999999998543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=8.7e-17 Score=167.75 Aligned_cols=312 Identities=16% Similarity=0.161 Sum_probs=224.8
Q ss_pred CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchh---H----HHhhHHHHHHhhccCCCCCCCcHHHHHHHH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQD---I----LAATIPILARLLGENNFSGNLTRSIQQAAA 75 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~---~----l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~ 75 (461)
+...|.+.++.+.+.+.+++..++..|+.+|+.++ +..... . +...++.+++.+++ +++.++..|+
T Consensus 122 ~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vR~~A~ 195 (852)
T 4fdd_A 122 ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH------SSPKIRSHAV 195 (852)
T ss_dssp TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC------SSHHHHHHHH
T ss_pred CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC------CCHHHHHHHH
Confidence 34579999999999999999999999999999999 322111 1 23377888887765 4577888899
Q ss_pred HHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHH
Q 044999 76 YCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGT 155 (461)
Q Consensus 76 ~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~ 155 (461)
.+|..+... .... ....-...++.+.+.+.++++.++..++.++..++...++.-.... .+.++.++..+++.++.+
T Consensus 196 ~aL~~~~~~-~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~v 272 (852)
T 4fdd_A 196 ACVNQFIIS-RTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENV 272 (852)
T ss_dssp HHHHTTTTT-TCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHhc-ccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHH
Confidence 999887763 2211 1111124678888888999999999999999998875543211111 136777888888889999
Q ss_pred HHHHHHHHHHhhCChHHHHHHHh--cCCHHHHHHHH-----------cC-----------CCHHHHHHHHHHHHHhhcCc
Q 044999 156 RRYLLEILSALALLREVRRVLIC--LGGLRYLVEAV-----------SF-----------GSMVSRERACQAIGLLAVTG 211 (461)
Q Consensus 156 ~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~~l-----------~~-----------~~~~~~~~a~~~L~~l~~~~ 211 (461)
+..|+..+..++.....+..+.. ...++.++..+ .+ .+..+|..+..++..++...
T Consensus 273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~ 352 (852)
T 4fdd_A 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY 352 (852)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc
Confidence 99999999999865544432211 12455566655 22 12246888999999988654
Q ss_pred hhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc
Q 044999 212 RARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV 291 (461)
Q Consensus 212 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 291 (461)
+. . +. ..+++.+...+.++++.++..|+.+|++++......-.-.-.++++.++..++++++.+|..++.++.+++.
T Consensus 353 ~~-~-~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 353 RD-E-LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp GG-G-GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred cH-H-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 42 1 11 235778888888899999999999999999863221111224668999999999999999999999999864
Q ss_pred C------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 044999 292 S------EANANAIAEHLVRILREGDNEANAAAADVLWDLAG 327 (461)
Q Consensus 292 ~------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~ 327 (461)
. ......+.+.+++.+.+.++.++..|+++|.+++.
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 2 12334455888888888899999999999999873
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.76 E-value=1.1e-14 Score=139.52 Aligned_cols=392 Identities=14% Similarity=0.079 Sum_probs=284.8
Q ss_pred HHhHHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCCc-----------------hhHH-Hh--hHHHHHHhhccCCCCC
Q 044999 9 EEAFNRFEQAVVS--GSEALQVKALTKLARVS--KFAP-----------------QDIL-AA--TIPILARLLGENNFSG 64 (461)
Q Consensus 9 ~~~~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~~-----------------~~~l-~~--~i~~l~~~l~~~~~~~ 64 (461)
..+++.++..|.. +|.++...+...|.++. ++.. .+.+ .+ .|+.|+++|+.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~----- 133 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE----- 133 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-----
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-----
Confidence 4568999999986 47788888888887655 2221 1122 22 79999999986
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCchhHHHHH-hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999 65 NLTRSIQQAAAYCLKQIASQADGALATEIG-QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI 143 (461)
Q Consensus 65 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~ 143 (461)
+|..++..++.+|..|+...++..++.+. ..++++.|+.+|++.+..+|..+...+..++.++.+.++.+.-+|+++.
T Consensus 134 -~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 134 -FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred -ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 56677888999999999863445888888 4599999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh----HHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcCCCH------HHHH---HHHHHHHHhhc
Q 044999 144 VIDLLNSCND----GTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSFGSM------VSRE---RACQAIGLLAV 209 (461)
Q Consensus 144 L~~ll~~~~~----~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~~~~------~~~~---~a~~~L~~l~~ 209 (461)
|+.++..... .+...++.++.++. .+..++..|.+.|+++.|..++..+.+ .... .++.++.-+..
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~ 292 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 9999976544 78899999999999 677789999999999999999875421 1112 35566666655
Q ss_pred Cc-------hhHHHHHhcCChHHHHHhcccC--CHHHHHHHHHHHHHHhcC-ccchhhhhhcC---------CHHHHHHH
Q 044999 210 TG-------RARRLLVELGVIPGLVELFHIG--DWTTKLVAGNTLGVVAAH-VEYITPVAEAG---------AIPLYAEL 270 (461)
Q Consensus 210 ~~-------~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g---------~i~~L~~l 270 (461)
.. .++..+.+.|+++.+++++..+ ...++..|+.+++.+... +.++..+.+.. ++..|+.+
T Consensus 293 ~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~ 372 (651)
T 3grl_A 293 PNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSM 372 (651)
T ss_dssp TTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence 42 2377889999999999998855 678899999999998877 66677766432 23334444
Q ss_pred hCCC-ChhHHHHHHHHHHHhc-cCcccHHHHH------------------HHHHHHhccCCHHHHHHHHHHHHHhhCC-C
Q 044999 271 LQGP-DSTGKEISEDVFCILA-VSEANANAIA------------------EHLVRILREGDNEANAAAADVLWDLAGY-K 329 (461)
Q Consensus 271 l~~~-~~~~~~~a~~~L~~l~-~~~~~~~~i~------------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~ 329 (461)
+.+. ..++|..++.++.... .+++.+..+. ..+..-+-+.++-..-.|+.++.++-.+ +
T Consensus 373 ~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 373 VNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA 452 (651)
T ss_dssp TCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred hcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence 5544 5788999999988875 4444555554 2344445556665556677788888754 4
Q ss_pred CchhHHhh------cC-----CHHHHHHhhcC-CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCC-hHHHHHhccC--C-
Q 044999 330 HSVPVIRN------SG-----AIPILVNLLRG-ENDEVREKVSGAIAQLSY-NEADRVALADAGA-VPIMIELLHD--E- 392 (461)
Q Consensus 330 ~~~~~l~~------~g-----~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~-i~~L~~ll~~--~- 392 (461)
+.++.+.+ .| .++.+..+|.. .+++++..-+..|..... ++.....|...+. ++.|++.+.. +
T Consensus 453 ~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~ 532 (651)
T 3grl_A 453 TQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGE 532 (651)
T ss_dssp HHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCH
T ss_pred HHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCc
Confidence 55555443 11 15566666653 456677766776666666 8888888888775 9999988743 2
Q ss_pred -CHHHHHHHHHHHHH
Q 044999 393 -SEELRDNAAESLIN 406 (461)
Q Consensus 393 -~~~~~~~a~~~L~~ 406 (461)
+.-++--++..|.-
T Consensus 533 ~~~lvqGL~a~LLGi 547 (651)
T 3grl_A 533 EEQLVQGLCALLLGI 547 (651)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 23345555555543
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.75 E-value=1.5e-15 Score=151.15 Aligned_cols=359 Identities=14% Similarity=0.140 Sum_probs=219.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHH
Q 044999 13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATE 92 (461)
Q Consensus 13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 92 (461)
+.+.+.+.++++.+|..|+.+++++..++ .....++.+.+++.+ +++.+++.|+.++.++...+++..
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~~~---~~~~l~~~l~~~L~d------~~~~VRk~A~~al~~i~~~~p~~~--- 156 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRVDK---ITEYLCEPLRKCLKD------EDPYVRKTAAVCVAKLHDINAQMV--- 156 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCSGG---GHHHHHHHHHHHSSC------SCHHHHHHHHHHHHHHHHSSCCCH---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCChHH---HHHHHHHHHHHHcCC------CChHHHHHHHHHHHHHHhhChhhc---
Confidence 34444566777777777777777766221 222267778888875 568899999999999998523322
Q ss_pred HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC-ChH
Q 044999 93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL-LRE 171 (461)
Q Consensus 93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~ 171 (461)
.+.+.++.+.++|.++++.|+..++.++..++..+++....-...+.+..|+..+...++..+...++++..++. +++
T Consensus 157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~ 235 (591)
T 2vgl_B 157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR 235 (591)
T ss_dssp -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH
T ss_pred -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH
Confidence 234678999999999999999999999999987654321000011235667777778888889999999988883 333
Q ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999 172 VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVT----GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGV 247 (461)
Q Consensus 172 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 247 (461)
... ..++.+...+++.++.++..|++++..+... ++....+ -....+.|+.++. +++.++..++.+|..
T Consensus 236 ~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 236 EAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp HHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 322 3467777788888999999999999998742 2222222 2335677776654 788999999999998
Q ss_pred HhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 248 VAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 248 l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
+... ++.-... +..+. .+.+++..++..++.+|.+++.. .+...+.+.+...+.+.+++++..++++++.++
T Consensus 309 i~~~~p~~~~~~-----~~~~~-~~~~d~~~Ir~~al~~L~~l~~~-~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 309 IVQKRPEILKQE-----IKVFF-VKYNDPIYVKLEKLDIMIRLASQ-ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp HHHHCCSTTTTC-----TTTTS-CCTTSCHHHHHHHHHHHHHTCCS-STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHH-----HHhhe-eccCChHHHHHHHHHHHHHHCCh-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8764 2211100 11111 11122355666666666665532 233444455556666666666666666666666
Q ss_pred CC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHH
Q 044999 327 GY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH-DESEELRDNAAES 403 (461)
Q Consensus 327 ~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~ 403 (461)
.. +.. ....++.|++++.+....++..+..++..+.. +++. ...+++.|.+.+. ...++++..++|+
T Consensus 382 ~~~~~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wi 451 (591)
T 2vgl_B 382 IKVEQS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWI 451 (591)
T ss_dssp TTCHHH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHH
T ss_pred HhChhH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 32 111 11234555566655555555555555555544 3332 1233455555443 2345555555555
Q ss_pred HHHhc
Q 044999 404 LINFS 408 (461)
Q Consensus 404 L~~l~ 408 (461)
|...+
T Consensus 452 lGey~ 456 (591)
T 2vgl_B 452 VGEYA 456 (591)
T ss_dssp HHTTC
T ss_pred HHccc
Confidence 55543
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=2.4e-15 Score=149.64 Aligned_cols=366 Identities=11% Similarity=0.078 Sum_probs=259.9
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG 87 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 87 (461)
....+..+++++.+.+..+|..+...+..+++.. .+...-+++.+.+-|++ +++.++..|+.+|+++.. +
T Consensus 47 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~kdL~~------~n~~ir~~AL~~L~~i~~---~ 116 (591)
T 2vgl_B 47 VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFVKDCED------PNPLIRALAVRTMGCIRV---D 116 (591)
T ss_dssp CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHGGGSSS------SSHHHHHHHHHHHHTCCS---G
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHcCCh---H
Confidence 3456777888888899999988888888877211 12222266777777765 456666667777777654 3
Q ss_pred hhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999 88 ALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 88 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 167 (461)
+.... .++.+.+++.+.++.+++.|+.++..+...+++. +...+.++.+.+++.+.++.++..|+.+|..++
T Consensus 117 ~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 117 KITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp GGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 32222 3577899999999999999999999988765543 233567899999999999999999999999998
Q ss_pred CChH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHH
Q 044999 168 LLRE-VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLG 246 (461)
Q Consensus 168 ~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 246 (461)
.+.. ....-...+.+..++..+.+.++..+...++++..++...+.. ....++.+..++++.++.++..|++++.
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLM 264 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4332 2100011124667777787888889999999998887554331 1235778888899999999999999999
Q ss_pred HHhcC----ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccC-cccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 044999 247 VVAAH----VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVS-EANANAIAEHLVRILREGDNEANAAAADV 321 (461)
Q Consensus 247 ~l~~~----~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~l~~ll~~~~~~~~~~a~~~ 321 (461)
.+... ++....+ -..+.+.|+.++. .++++|..++.+|..+... ++.-......+. .+.+++..++..++.+
T Consensus 265 ~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~-~~~~d~~~Ir~~al~~ 341 (591)
T 2vgl_B 265 KFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFF-VKYNDPIYVKLEKLDI 341 (591)
T ss_dssp HSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS-CCTTSCHHHHHHHHHH
T ss_pred HHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhhe-eccCChHHHHHHHHHH
Confidence 98742 2222222 2344677776664 7899999999999998643 221110001111 1224458999999999
Q ss_pred HHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999 322 LWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNA 400 (461)
Q Consensus 322 L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 400 (461)
+..++... +... +++.|..++.+.+.+++..++++++.++. .+.... .+++.|++++.+..+.++..+
T Consensus 342 L~~l~~~~-nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~ 410 (591)
T 2vgl_B 342 MIRLASQA-NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEA 410 (591)
T ss_dssp HHHTCCSS-THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHCChh-hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHH
Confidence 99998543 3332 45668889999999999999999999998 544332 357899999999999999988
Q ss_pred HHHHHHhcC
Q 044999 401 AESLINFSE 409 (461)
Q Consensus 401 ~~~L~~l~~ 409 (461)
..++.++..
T Consensus 411 i~~l~~ii~ 419 (591)
T 2vgl_B 411 IVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888853
No 47
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.69 E-value=2e-14 Score=150.33 Aligned_cols=392 Identities=12% Similarity=0.091 Sum_probs=268.3
Q ss_pred CcHHHhHHHHHHHhhcC-CHHHHHHHHHHHHhhc-CCCc-----hhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHH
Q 044999 6 TNWEEAFNRFEQAVVSG-SEALQVKALTKLARVS-KFAP-----QDILAATIPILARLLGENNFSGNLTRSIQQAAAYCL 78 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~-~~~~~~~a~~~l~~la-~~~~-----~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L 78 (461)
..|.+.++.+.+.+.++ ++.++..|+..++.++ .... .......++.+...+.. .+.++.++..++.++
T Consensus 130 ~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~----~~~~~~vr~~al~~l 205 (861)
T 2bpt_A 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS----TETSKAVRLAALNAL 205 (861)
T ss_dssp TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST----TCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHH
Confidence 47999999999999998 9999999999999998 3221 22333388888888875 333677888899999
Q ss_pred HHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh-HHHHHHcCCHHHHHHHhcCCChHHHH
Q 044999 79 KQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN-RVIVARNGGLEIVIDLLNSCNDGTRR 157 (461)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~ 157 (461)
..+.................++.+.+.+.++++.++..++.++..++...+.. ...+ ....++.+...+.+.++.++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~ 284 (861)
T 2bpt_A 206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVAS 284 (861)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHH
Confidence 98764211111000011224667777888889999999999998877543321 2222 215667777788888999999
Q ss_pred HHHHHHHHhhCChHH------------------HHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCch
Q 044999 158 YLLEILSALALLREV------------------RRVLICLGGLRYLVEAVSFG-------SMVSRERACQAIGLLAVTGR 212 (461)
Q Consensus 158 ~a~~~L~~l~~~~~~------------------~~~~~~~~~l~~l~~~l~~~-------~~~~~~~a~~~L~~l~~~~~ 212 (461)
.|+..+..++..... ..... ...++.++..+... ++.++..+..+|..++...+
T Consensus 285 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~ 363 (861)
T 2bpt_A 285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc
Confidence 999999988743211 11111 34677788887642 35789999999999876543
Q ss_pred hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 213 ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 213 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
. ..+ ...++.+...+.+.++..++.++.+++.++.... .-.... ..+++.++..+.++++.+|..++.++.+++
T Consensus 364 ~-~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 364 N-HIL--EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp G-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred H-hHH--HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 2 111 1246677777888899999999999999986522 111111 246888899999999999999999999885
Q ss_pred cC-------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-C----CchhHHhhcCCHHHHHHhhcCCC--HHHH
Q 044999 291 VS-------EANANAIAEHLVRILREGDNEANAAAADVLWDLAGY-K----HSVPVIRNSGAIPILVNLLRGEN--DEVR 356 (461)
Q Consensus 291 ~~-------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~----~~~~~l~~~g~i~~L~~ll~~~~--~~v~ 356 (461)
.. ...-..+.+.+++.+.+. +.++..|++++.+++.. . ....... ..+++.|+..+.+.+ +.++
T Consensus 440 ~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr 517 (861)
T 2bpt_A 440 DSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNAR 517 (861)
T ss_dssp HHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHH
Confidence 32 233455558888888776 99999999999999853 1 1111111 245778888887543 7899
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccC---------------CCHHHHHHHHHHHHHhcCC
Q 044999 357 EKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHD---------------ESEELRDNAAESLINFSED 410 (461)
Q Consensus 357 ~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~ 410 (461)
..+..++..++. .+........ ..++.+++.+.. ....++..++.+|.+++..
T Consensus 518 ~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (861)
T 2bpt_A 518 ASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586 (861)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 3332222222 246666666532 2455777888888888644
No 48
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.68 E-value=5.3e-14 Score=140.47 Aligned_cols=284 Identities=13% Similarity=0.059 Sum_probs=204.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
..+.|.+-+.+.++.+|..|+.+++++..+ .+.+ .++.+.+.+.+ .++.+++.|+.++.++... +++.
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~----~~~~~l~~~l~~~L~~------~~~~VRk~A~~al~~l~~~-~p~~ 176 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS----EMCRDLAGEVEKLLKT------SNSYLRKKAALCAVHVIRK-VPEL 176 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHHHH-CGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHH-ChHH
Confidence 456778888899999999999999999832 2344 78889999986 5678888899999999985 3332
Q ss_pred HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcC---------------CChH
Q 044999 90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNS---------------CNDG 154 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~ 154 (461)
. .+.++.+.+++.+.++.++..++.++..++..+++....+. ..++.++.+|.+ .++.
T Consensus 177 v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 177 M-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp G-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred H-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 1 25778889999999999999999999998865544322332 567888876653 4788
Q ss_pred HHHHHHHHHHHhhC-ChHHHHHHHhcCCHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 044999 155 TRRYLLEILSALAL-LREVRRVLICLGGLRYLVEAVS------FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLV 227 (461)
Q Consensus 155 ~~~~a~~~L~~l~~-~~~~~~~~~~~~~l~~l~~~l~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~ 227 (461)
.+...+++|..++. +++... ...+.|..++. +.+..+...++.++..+...+.... .+++.|.
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~ 319 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG 319 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence 88999999999984 333222 23444555543 1245788888888888754322121 2467777
Q ss_pred HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHh
Q 044999 228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRIL 307 (461)
Q Consensus 228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll 307 (461)
.++.++++.++..|+.+|..++... ..++. ...+.++.++.+++..++..++.+|..++.... ...+.+.+...+
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~iv~eL~~~l 394 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRGMMKELLYFL 394 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHHHHHHHHHHH
Confidence 7788888888888888888887641 11121 235677888888888888888888888876543 344557777777
Q ss_pred ccCCHHHHHHHHHHHHHhhC
Q 044999 308 REGDNEANAAAADVLWDLAG 327 (461)
Q Consensus 308 ~~~~~~~~~~a~~~L~~l~~ 327 (461)
.+.+++++..++.+|+.++.
T Consensus 395 ~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 77888888888888888884
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.65 E-value=3.6e-14 Score=148.69 Aligned_cols=314 Identities=14% Similarity=0.134 Sum_probs=220.9
Q ss_pred CCcHHHhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CCCch---hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHH
Q 044999 5 DTNWEEAFNRFEQAVVSG--SEALQVKALTKLARVS-KFAPQ---DILAATIPILARLLGENNFSGNLTRSIQQAAAYCL 78 (461)
Q Consensus 5 ~~~~~~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~~~~---~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L 78 (461)
...|.+.++.+...+.++ ++.+|..++.+++.++ ..... ..+...++.+.+.+.. ++.++.++..|+.++
T Consensus 123 ~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~----~~~~~~vr~~a~~~l 198 (876)
T 1qgr_A 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK----EEPSNNVKLAATNAL 198 (876)
T ss_dssp GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST----TCSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHH
Confidence 357999999999999999 9999999999999998 32211 1222277888888875 322567777799999
Q ss_pred HHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHH
Q 044999 79 KQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRY 158 (461)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~ 158 (461)
..+.................++.+.+.+.+.++.++..++.++..++...+..-........++.++..+.+.++.++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 278 (876)
T 1qgr_A 199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQ 278 (876)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99886311111111111225777778888889999999999999888654433222233367888888888888999999
Q ss_pred HHHHHHHhhCChHHH-----H-------------HHH---hcCCHHHHHHHHcC-------CCHHHHHHHHHHHHHhhcC
Q 044999 159 LLEILSALALLREVR-----R-------------VLI---CLGGLRYLVEAVSF-------GSMVSRERACQAIGLLAVT 210 (461)
Q Consensus 159 a~~~L~~l~~~~~~~-----~-------------~~~---~~~~l~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~ 210 (461)
|+..+..++...... . ... -...++.++..+.. +++.+|..+..++..++..
T Consensus 279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH
Confidence 999998887432100 0 000 02246667777742 3457899999999988765
Q ss_pred chhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCcc--chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999 211 GRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVE--YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288 (461)
Q Consensus 211 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 288 (461)
.+. .+. ..+++.+...+.++++.++..++.+++.++.... ..... -..+++.++..+.++++.+|..|+.+|.+
T Consensus 359 ~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 359 CED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp HGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 442 111 2356677778888899999999999999987622 11111 23568899999999999999999999999
Q ss_pred hccC-------cccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 044999 289 LAVS-------EANANAIAEHLVRILREGDNEANAAAADVLWDLAG 327 (461)
Q Consensus 289 l~~~-------~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~ 327 (461)
++.. ...-..+.+.++..+.+. +.++..++++|.+++.
T Consensus 435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 9643 233445558888888775 8999999999999984
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.65 E-value=8.3e-14 Score=125.35 Aligned_cols=258 Identities=15% Similarity=0.157 Sum_probs=202.0
Q ss_pred HHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHH
Q 044999 93 IGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREV 172 (461)
Q Consensus 93 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 172 (461)
....+.++.|++.|.++++.++..++.++..+.. .+.++.|++++++.++.+|..|+.+|..+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3355689999999999999999999999987762 12578899999999999999999999998744332
Q ss_pred HHHHHhcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 173 RRVLICLGGLRYLV-EAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 173 ~~~~~~~~~l~~l~-~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
... .++.+. .++.++++.+|..++.+|+++....+.. ....++.|+..+.++++.++..++.+|+++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 211 233444 2457789999999999999997433221 12357889999999999999999999988653
Q ss_pred ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 044999 252 VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHS 331 (461)
Q Consensus 252 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 331 (461)
.+.++.|+.+++++++.++..++.+|..+.... ....+.+..++.++++.++..|+.+|+.+.
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----- 220 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----- 220 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-----
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Confidence 247899999999999999999999999985322 234588999999999999999999999985
Q ss_pred hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHH
Q 044999 332 VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLI 405 (461)
Q Consensus 332 ~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~ 405 (461)
....++.|+.++.+++ ++..+..+|+.+... ..++.|.+++.+ .++++...+..+|.
T Consensus 221 -----~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~----------~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 221 -----DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK----------TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp -----CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG----------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -----CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch----------hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 2457888999998754 888999999988641 468999998854 56777777777664
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=6.4e-14 Score=139.88 Aligned_cols=323 Identities=13% Similarity=0.051 Sum_probs=238.6
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA 88 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 88 (461)
...+...++++.+.+...|+.+-..+..+++.. .+.+.-++..+.+-|++ . ++.++..|+.+|+++.. ++
T Consensus 69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~l~in~l~kDL~~----~--n~~vr~lAL~~L~~i~~--~~- 138 (618)
T 1w63_A 69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHLLMTNCIKNDLNH----S--TQFVQGLALCTLGCMGS--SE- 138 (618)
T ss_dssp GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHSC----S--SSHHHHHHHHHHHHHCC--HH-
T ss_pred cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcCC----C--CHhHHHHHHHHHHhcCC--HH-
Confidence 346677788889999999998888888888332 22333388888888886 3 34466669999999985 22
Q ss_pred hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999 89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL 168 (461)
Q Consensus 89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 168 (461)
.. ...++.+.+++++.++.+++.|+.++..+...+++... +.++.+.+++.+.++.++..|+.+|..++.
T Consensus 139 ~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 139 MC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp HH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 11 23568888999999999999999999999876654322 567788889999999999999999999995
Q ss_pred Ch-HHHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-
Q 044999 169 LR-EVRRVLICLGGLRYLVEAVSF---------------GSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH- 231 (461)
Q Consensus 169 ~~-~~~~~~~~~~~l~~l~~~l~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~- 231 (461)
.. +....+ ...++.++..|.+ .++..+...+++|+.++...+... ....+.|..++.
T Consensus 209 ~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~----~~~~~~L~~l~~~ 282 (618)
T 1w63_A 209 RSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS----EAMNDILAQVATN 282 (618)
T ss_dssp SHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH----HTTHHHHHHHHHT
T ss_pred hChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHhc
Confidence 54 322222 2568888877753 478889999999999987665411 223445555543
Q ss_pred -----cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHH
Q 044999 232 -----IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVR 305 (461)
Q Consensus 232 -----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~ 305 (461)
+.+..+...++.++..+...+. +. ..++..|..++.+.++.++..++.+|..++...+. -......++.
T Consensus 283 ~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~ 357 (618)
T 1w63_A 283 TETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD 357 (618)
T ss_dssp SCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2345778888888888654322 11 13578889999999999999999999999754321 1111178888
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 306 ILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 306 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
++.+++..++..|+.+|..++..... ..+ ++.|..++.+.+++++..++.+++.++.
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~nv-~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNNI-RGM-----MKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSST-HHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HccCCChhHHHHHHHHHHHHcccccH-HHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875333 332 4668888888899999999999999998
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.61 E-value=6e-14 Score=135.83 Aligned_cols=380 Identities=15% Similarity=0.070 Sum_probs=258.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHH-
Q 044999 13 NRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALAT- 91 (461)
Q Consensus 13 ~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~- 91 (461)
..++....++|..+|..|-..|..+... .....+..|+..+.. ++.++.++..|+..|.++... ......
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~-~~~~~~~ 74 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTS-KDPDIKA 74 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCC-SSHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccc-cchHHHH
Confidence 3445556688999999999988876510 012256677788875 544566777799999999753 211000
Q ss_pred -------HH---HhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC--ChHHHHHH
Q 044999 92 -------EI---GQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC--NDGTRRYL 159 (461)
Q Consensus 92 -------~~---~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a 159 (461)
.+ .....-..+++.+.+.++.+ ..++.++..++....... .-.+.++.++..+.+. ++.++..+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 00 01123345777788877777 788888887775321110 1145788899999888 89999999
Q ss_pred HHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcccC
Q 044999 160 LEILSALALL--REVRRVLICLGGLRYLVEAVSFG--SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHIG 233 (461)
Q Consensus 160 ~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~~ 233 (461)
+.+|..++.. ++...... ...++.++..+.+. ++.+|..|+.+++++...-.. .......-.++.+...+.++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 9999999832 22111111 23678888899888 789999999999997643221 11111111356666677788
Q ss_pred CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc-------------------
Q 044999 234 DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE------------------- 293 (461)
Q Consensus 234 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------- 293 (461)
+++++..++.+|..++.. ++.-......++++.++..+++.+++++..++..+..++...
T Consensus 230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 999999999999999865 221111122266788888888889999999999888885432
Q ss_pred c---c-H---HHHHHHHHHHhcc-------CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHH
Q 044999 294 A---N-A---NAIAEHLVRILRE-------GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKV 359 (461)
Q Consensus 294 ~---~-~---~~i~~~l~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a 359 (461)
. . + ..+.+.+++.+.. .++.++..|+.+|..++..-. +.+. ..+++.+...+.+.+..+|..+
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCChHHHHHH
Confidence 0 0 1 2233777777753 245789999999999985422 1222 2467788888899999999999
Q ss_pred HHHHHHhcCCh--h-hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 360 SGAIAQLSYNE--A-DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 360 ~~~L~~l~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
+.+++.++... + .+..+ ..++|.++..++++++.+|..|+++|.+++..-
T Consensus 387 l~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999832 1 11111 457899999999999999999999999998543
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.59 E-value=1.9e-12 Score=135.44 Aligned_cols=386 Identities=12% Similarity=0.067 Sum_probs=259.0
Q ss_pred HhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CC-C-------------chhHHHh-hHHHHHHhhccCCCCCCCcHHHH
Q 044999 10 EAFNRFEQAVVSG--SEALQVKALTKLARVS-KF-A-------------PQDILAA-TIPILARLLGENNFSGNLTRSIQ 71 (461)
Q Consensus 10 ~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~-~-------------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~ 71 (461)
+.+..+.+.+.+. ++.+|..|+..|.+.. .. . ....... +-+.+++.|.. +++.++
T Consensus 39 ~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~------~~~~vr 112 (861)
T 2bpt_A 39 QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS------IEPRIA 112 (861)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC------SSHHHH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC------CchHHH
Confidence 4445566667653 6899999999999986 21 0 1111122 55677788875 345676
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC-CHHHHHHHHHHHHHHhccCh-hhH-HHHHHcCCHHHHHHHh
Q 044999 72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS-DDSFRTVLVKCLRVFVTFGN-ENR-VIVARNGGLEIVIDLL 148 (461)
Q Consensus 72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~l~~~~~-~~~-~~~~~~g~i~~L~~ll 148 (461)
..++.++..++.. +.... .-...++.|++.+.++ ++.++..+..++..++..-. +.+ -.-.....++.+...+
T Consensus 113 ~~~~~~l~~i~~~-~~p~~---~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l 188 (861)
T 2bpt_A 113 NAAAQLIAAIADI-ELPHG---AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGA 188 (861)
T ss_dssp HHHHHHHHHHHHH-HGGGT---CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hCccc---ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhh
Confidence 6688999998873 11100 0023578889999988 89989899888888775321 110 0000112456667777
Q ss_pred cCC--ChHHHHHHHHHHHHhhC-ChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCC
Q 044999 149 NSC--NDGTRRYLLEILSALAL-LREVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGV 222 (461)
Q Consensus 149 ~~~--~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~ 222 (461)
.+. ++.+|..|+.++..+.. ....- ........++.+...+.+.++.+|..++.++..++...+. ...+. ...
T Consensus 189 ~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l 267 (861)
T 2bpt_A 189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QAL 267 (861)
T ss_dssp STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 776 78999999999998752 12110 0000122566777788888999999999999999876543 22222 156
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcCccc---------------hhhhh--hcCCHHHHHHHhCCC-------ChhH
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY---------------ITPVA--EAGAIPLYAELLQGP-------DSTG 278 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------------~~~~~--~~g~i~~L~~ll~~~-------~~~~ 278 (461)
++.+...+.+.++.++..++.++..++..... ...+. -..++|.++..+... ++.+
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~ 347 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcH
Confidence 77777888888999999999999888764210 00111 134577888888642 3578
Q ss_pred HHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcCCCHH
Q 044999 279 KEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRGENDE 354 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~~~~ 354 (461)
+..+..+|..++... .....+.+.+.+.+.+.++.+|+.|+.+++.++.... ...... ..+++.|+..+.++++.
T Consensus 348 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence 999999999886432 2333444888888888899999999999999996532 111122 24788899999999999
Q ss_pred HHHHHHHHHHHhcCC--hhh--HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 355 VREKVSGAIAQLSYN--EAD--RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 355 v~~~a~~~L~~l~~~--~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
++..+++++++++.. +.. ...+ ...++.++..+++. +.++..+++++.+++..
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 999999999999862 110 1111 12467788888665 99999999999988753
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.58 E-value=2.6e-13 Score=122.11 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=180.8
Q ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH
Q 044999 136 ARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR 215 (461)
Q Consensus 136 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 215 (461)
...+.++.|++.|+++++.+|..|+.+|.++.. .+.++.++.++.++++.+|..++.+|+.+........
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 355689999999999999999999999998862 2357889999999999999999999999864433211
Q ss_pred HHHhcCChHHHHH-hcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc
Q 044999 216 LLVELGVIPGLVE-LFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE 293 (461)
Q Consensus 216 ~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 293 (461)
. .++.|.. ++.++++.++..++.+|+++... +... ...++.|...+.++++.++..++.+|.++....
T Consensus 90 ~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~ 159 (280)
T 1oyz_A 90 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVINDKA 159 (280)
T ss_dssp H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH
Confidence 1 2334442 45678999999999999999743 2111 234789999999999999999999999885421
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhH
Q 044999 294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADR 373 (461)
Q Consensus 294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 373 (461)
..+.|+.++.++++.++..|+.+|..+... ....++.|..++.++++.++..++.+|+++..
T Consensus 160 -----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----- 221 (280)
T 1oyz_A 160 -----TIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----- 221 (280)
T ss_dssp -----CHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred -----HHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence 348889999999999999999999998532 12457889999999999999999999999872
Q ss_pred HHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 374 VALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 374 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
...++.|+.++.+++ ++..+..+|..+..
T Consensus 222 -----~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 222 -----KRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp -----GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred -----HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 236889999997644 88999999998864
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.57 E-value=1e-12 Score=137.71 Aligned_cols=385 Identities=12% Similarity=0.044 Sum_probs=257.9
Q ss_pred HHhHHHHHHHhhcC--CHHHHHHHHHHHHhhc--CCCc-----hh-------HHHh-hHHHHHHhhccCCCCCCCcHHHH
Q 044999 9 EEAFNRFEQAVVSG--SEALQVKALTKLARVS--KFAP-----QD-------ILAA-TIPILARLLGENNFSGNLTRSIQ 71 (461)
Q Consensus 9 ~~~~~~l~~ll~~~--~~~~~~~a~~~l~~la--~~~~-----~~-------~l~~-~i~~l~~~l~~~~~~~~~~~~~~ 71 (461)
.+.+..+...+.++ ++.+|..|+..|.+.. .... .. .... +-+.+++.|.. .+ +.+
T Consensus 34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~----~~--~~~- 106 (876)
T 1qgr_A 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT----ET--YRP- 106 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT----CC--SSS-
T ss_pred hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCC----Cc--HHH-
Confidence 44556677777764 5889999999998865 2111 11 1111 44557777775 33 234
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHH--HcCCHHHHHHH
Q 044999 72 QAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVA--RNGGLEIVIDL 147 (461)
Q Consensus 72 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~g~i~~L~~l 147 (461)
..++.++..++.. ..... .-...++.+++.+.++ ++.++..+..++..++..-.. ..+. -...++.+...
T Consensus 107 ~~~~~~l~~i~~~--~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~ 180 (876)
T 1qgr_A 107 SSASQCVAGIACA--EIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQG 180 (876)
T ss_dssp CHHHHHHHHHHHH--HGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHh
Confidence 5577888888863 11000 0124578889999888 889899999999888753211 1111 12345666777
Q ss_pred hcCC--ChHHHHHHHHHHHHhhCC-hHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCC
Q 044999 148 LNSC--NDGTRRYLLEILSALALL-REVR-RVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGV 222 (461)
Q Consensus 148 l~~~--~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~ 222 (461)
+.+. +..+|..|+.++..+... .... ........++.+...+.+.++++|..++.++..+....+. -.......+
T Consensus 181 l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 260 (876)
T 1qgr_A 181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260 (876)
T ss_dssp HSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7776 578999999999988732 2211 1111122577777788888899999999999999875544 112222357
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcCcc-------------------chhhhh--hcCCHHHHHHHhC-------CC
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAHVE-------------------YITPVA--EAGAIPLYAELLQ-------GP 274 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------------------~~~~~~--~~g~i~~L~~ll~-------~~ 274 (461)
++.++..+.+.++.++..++.++..++.... ...... -..+++.++..+. +.
T Consensus 261 ~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~ 340 (876)
T 1qgr_A 261 FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD 340 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTT
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccc
Confidence 8888888888889999999999888875410 000100 0234667777775 23
Q ss_pred ChhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcC
Q 044999 275 DSTGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 275 ~~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~ 350 (461)
++.+|..+..+|..++... ..-..+.+.+...+.+.++.+|..|+.+++.++.... .... .-.+.++.++..+.+
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD 419 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCC
Confidence 5789999999998885432 2233344778888888999999999999999996533 1222 223578899999999
Q ss_pred CCHHHHHHHHHHHHHhcC-Chhh---HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 351 ENDEVREKVSGAIAQLSY-NEAD---RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 351 ~~~~v~~~a~~~L~~l~~-~~~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
+++.+|..+++++.+++. .+.. ...+ ...++.|+..+.+. +.++..++++|.+++..
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999997 3321 1111 13467778888664 89999999999998743
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=1.7e-13 Score=132.65 Aligned_cols=345 Identities=11% Similarity=0.033 Sum_probs=234.2
Q ss_pred HhHHHHHHHhhcC--CHHHHHHHHHHHHhhc-CC-C------------chhHHHh-hHHHHHHhhccCCCCCCCcHHHHH
Q 044999 10 EAFNRFEQAVVSG--SEALQVKALTKLARVS-KF-A------------PQDILAA-TIPILARLLGENNFSGNLTRSIQQ 72 (461)
Q Consensus 10 ~~~~~l~~ll~~~--~~~~~~~a~~~l~~la-~~-~------------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~ 72 (461)
+.+..+..++.+. ++.+|..|+..|.++. .. . ....... +-..++..|.. .+. .+ .
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~----~~~--~v-~ 107 (462)
T 1ibr_B 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT----ETY--RP-S 107 (462)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC----CCS--SS-C
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCC----CCc--hh-h
Confidence 3445566677665 6899999999999987 21 1 1111222 44557777775 332 35 5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHHcCCHHHHHHHhc
Q 044999 73 AAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFG-NENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 73 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~g~i~~L~~ll~ 149 (461)
.++.++..++.. .... . .-.+.++.|++.+.++ ++.++..++.++..++... ++.-.... ...++.+...++
T Consensus 108 ~~~~~i~~ia~~-~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~ 182 (462)
T 1ibr_B 108 SASQCVAGIACA-EIPV-N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMR 182 (462)
T ss_dssp SHHHHHHHHHHH-HGGG-T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-hccc-c--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhC
Confidence 588888888873 1110 0 1135689999999888 8898999999999888632 11111111 135777888888
Q ss_pred CC--ChHHHHHHHHHHHHhhCC-hHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCCh
Q 044999 150 SC--NDGTRRYLLEILSALALL-REVRR-VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVI 223 (461)
Q Consensus 150 ~~--~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i 223 (461)
+. ++.+|..|+.++.++... .+... .....-.++.+...+.+.+++++..++.++..++...+. ...+. .+++
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~ 261 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALF 261 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 87 689999999999987632 21110 111111466667777788999999999999999875543 22221 1567
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhcCc------------------cchhhhhh---cCCHHHHHHHhCC-------CC
Q 044999 224 PGLVELFHIGDWTTKLVAGNTLGVVAAHV------------------EYITPVAE---AGAIPLYAELLQG-------PD 275 (461)
Q Consensus 224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------~~~~~~~~---~g~i~~L~~ll~~-------~~ 275 (461)
+.++..+++.++.++..++..+..++... .....+.+ ..++|.++..+.. .+
T Consensus 262 ~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~ 341 (462)
T 1ibr_B 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 341 (462)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccccc
Confidence 77778888889999999999988887542 01111111 2356777777743 24
Q ss_pred hhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC--chhHHhhcCCHHHHHHhhcCC
Q 044999 276 STGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKH--SVPVIRNSGAIPILVNLLRGE 351 (461)
Q Consensus 276 ~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~L~~ll~~~ 351 (461)
+.++..+..+|..++..-. ....+.+.+...+.+.++.+|..|+.+++.++.... ..... -..+++.++..+.++
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP 420 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC
Confidence 6789999999999854322 223333888888999999999999999999996432 11111 256899999999999
Q ss_pred CHHHHHHHHHHHHHhcC
Q 044999 352 NDEVREKVSGAIAQLSY 368 (461)
Q Consensus 352 ~~~v~~~a~~~L~~l~~ 368 (461)
++.+|..|+++|.+++.
T Consensus 421 ~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICE 437 (462)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999997
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.51 E-value=2e-12 Score=140.23 Aligned_cols=384 Identities=13% Similarity=0.119 Sum_probs=258.9
Q ss_pred cHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCch--------hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQ--------DILAATIPILARLLGENNFSGNLTRSIQQAAAYC 77 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~--------~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~ 77 (461)
.++..++.+...+.++++.+|..|+.+++.++ ..... ....+.+|.+++.+.. ++++.++..|+.+
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHH
Confidence 46677788888888888899999999999888 22221 1233489999999972 2456677779999
Q ss_pred HHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC-hHHH
Q 044999 78 LKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN-DGTR 156 (461)
Q Consensus 78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~ 156 (461)
|..++......... .-...++.+...+.++++.++..++.++..++...++ .+ -...++.++..+...+ +.++
T Consensus 158 l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 158 MADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp HHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHH
Confidence 99998631111110 1133577888899999999999999999988864422 12 2345778888775543 4677
Q ss_pred HHHHHHHHHhhCC-hH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhccc
Q 044999 157 RYLLEILSALALL-RE-VRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFHI 232 (461)
Q Consensus 157 ~~a~~~L~~l~~~-~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~~ 232 (461)
..++.++..++.. .. ... .-...++.++..+.+.++++|..++.++..++...+. ...+ ...++.++..+..
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTY 307 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCC
Confidence 7888888888732 21 111 1135789999999988889999999999988775433 2222 1234444443321
Q ss_pred -------------------------------------CCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999 233 -------------------------------------GDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 233 -------------------------------------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
..+.++..|+.++..++.. ++.-..+ -..+++.+...+.+.
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKER 386 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCC
Confidence 1235688899999988875 2211112 235678888888888
Q ss_pred ChhHHHHHHHHHHHhccCc-----------------ccHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhhCC-C
Q 044999 275 DSTGKEISEDVFCILAVSE-----------------ANANA-------IAEHLVRILREGDNEANAAAADVLWDLAGY-K 329 (461)
Q Consensus 275 ~~~~~~~a~~~L~~l~~~~-----------------~~~~~-------i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~ 329 (461)
++.+|..+..++..+...- ..... +.+.+.+.+++.++.++..++.+|..++.. +
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch
Confidence 9999999998887764211 11111 115566668889999999999999998853 2
Q ss_pred CchhHHhhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHH
Q 044999 330 HSVPVIRNSGAIPILVNLLRGEND--EVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLI 405 (461)
Q Consensus 330 ~~~~~l~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 405 (461)
..... .-...++.+...+.+.++ .++..++..+..+.. .++.-..+. ...+|.|+..+.+.+..++..++.++.
T Consensus 467 ~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~ 544 (1230)
T 1u6g_C 467 GALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQ 544 (1230)
T ss_dssp TTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 22111 123467888888887754 889999999988865 333222222 357999999998889999888888888
Q ss_pred Hhc
Q 044999 406 NFS 408 (461)
Q Consensus 406 ~l~ 408 (461)
.++
T Consensus 545 ~l~ 547 (1230)
T 1u6g_C 545 QLV 547 (1230)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.51 E-value=3.2e-12 Score=127.25 Aligned_cols=323 Identities=14% Similarity=0.147 Sum_probs=230.1
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
..+...++++.+.+...|+.+-..+..+++..+ +.+.-++..+.+-+++ +++-++..|+.+|+++.. ++.
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~------~n~~ir~lALr~L~~i~~---~e~ 143 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLAS------RNPTFMGLALHCIANVGS---REM 143 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHHHCC---HHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCC------CCHHHHHHHHHHhhccCC---HHH
Confidence 356778888999999999999889988883322 3333378888888876 345566669999999875 222
Q ss_pred HHHHHhcCCHHHHHhcC--CCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 044999 90 ATEIGQSGVINSVLRLF--PQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 167 (461)
.+ ..++.+.+++ .+.++.|++.|+.++..+...+++.. ...+.++.+.++|.+.++.++..|+.++..++
T Consensus 144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 22 3457788888 89999999999999998887664432 22578999999999999999999999999998
Q ss_pred -CChHHHHHHHhcCCHHHHH----HHHcCC-------------CHHHHHHHHHHHHHhhcCc-hh-HHHHHhcCChHHHH
Q 044999 168 -LLREVRRVLICLGGLRYLV----EAVSFG-------------SMVSRERACQAIGLLAVTG-RA-RRLLVELGVIPGLV 227 (461)
Q Consensus 168 -~~~~~~~~~~~~~~l~~l~----~~l~~~-------------~~~~~~~a~~~L~~l~~~~-~~-~~~~~~~~~i~~L~ 227 (461)
.+++. + ...++.++ +++..+ ++..+...++.+..++... +. ...+.+ .+..++
T Consensus 216 ~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il 288 (621)
T 2vgl_A 216 QKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL 288 (621)
T ss_dssp HHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred HhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence 34432 1 12333333 343221 6788999999999888643 22 444443 344444
Q ss_pred Hhcc---------cCC--HHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH
Q 044999 228 ELFH---------IGD--WTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA 296 (461)
Q Consensus 228 ~ll~---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 296 (461)
..+. +.+ ..+...++.++..+...++... .++..|..++.+.+++++..++..|..++......
T Consensus 289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 3321 112 2677778888888763332222 24678889998889999999999999997654322
Q ss_pred HHHH---HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 297 NAIA---EHLVRILR-EGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 297 ~~i~---~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
..+. ..++.+++ ++++.++..++.+|..++.. .+.+. ++..|..++.+.+.+.+..++.+++.++.
T Consensus 364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 2233 77888888 88999999999999999854 33333 34458888888889999999999998886
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.49 E-value=2.2e-12 Score=110.69 Aligned_cols=190 Identities=17% Similarity=0.168 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhh
Q 044999 179 LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPV 258 (461)
Q Consensus 179 ~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 258 (461)
.+.++.|+..|.++++.+|..++..|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4578999999999999999999999998743 3578999999999999999999999998753
Q ss_pred hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc
Q 044999 259 AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS 338 (461)
Q Consensus 259 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~ 338 (461)
.+.++.|+.++.++++.++..++.+|..+... ...+.|+.++.++++.++..|+.+|+.+.. .
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~ 142 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------E 142 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------H
Confidence 34589999999999999999999999998642 233788899999999999999999999843 3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcc
Q 044999 339 GAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 339 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
..++.|..++.++++.++..++.+|..+.. ...++.|..+++++++.++..|..+|.++...+.+
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 478899999999999999999999999863 12478899999999999999999999999877654
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.48 E-value=5e-12 Score=108.43 Aligned_cols=189 Identities=15% Similarity=0.185 Sum_probs=159.2
Q ss_pred hcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHH
Q 044999 95 QSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRR 174 (461)
Q Consensus 95 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 174 (461)
..+.++.|++.|+++++.++..++..+..+.. .+.++.|++++.++++.+|..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34568999999999999999999999887653 2468999999999999999999999988752
Q ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccc
Q 044999 175 VLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEY 254 (461)
Q Consensus 175 ~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 254 (461)
.+.++.++..+.++++.+|..++.+|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3578899999999999999999999999843 3478999999999999999999999999853
Q ss_pred hhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999 255 ITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK 329 (461)
Q Consensus 255 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~ 329 (461)
...++.|..++.++++.++..++.+|..+.. ....+.|..++.++++.++..|..+|.++....
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2358999999999999999999999999853 334478888999999999999999999998653
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.47 E-value=2.2e-11 Score=131.98 Aligned_cols=381 Identities=13% Similarity=0.119 Sum_probs=257.4
Q ss_pred HhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCC--ch-hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 044999 10 EAFNRFEQAVVSGSEALQVKALTKLARVS-KFA--PQ-DILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA 85 (461)
Q Consensus 10 ~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~--~~-~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 85 (461)
..++.+..-+.+.|+.+|..|...|.+.. .+. .. ....+.++.+++.|.. .++.++..|+.+|..++..-
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~~ 79 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVSKV 79 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhC
Confidence 45677777789999999999999988766 221 11 1233388888898874 45678888999999999741
Q ss_pred CchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhh------HHHHHHcCCHHHHHHHhc-CCChHHHHH
Q 044999 86 DGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNEN------RVIVARNGGLEIVIDLLN-SCNDGTRRY 158 (461)
Q Consensus 86 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~g~i~~L~~ll~-~~~~~~~~~ 158 (461)
.+... ...++.+.+.+.++++.+|..++.++..++..-... ... .-...++.|++.+. +.++.++..
T Consensus 80 ~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 80 KEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp CHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred CHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHH
Confidence 22111 235678888888888888999998888777533221 111 12346888888888 578899999
Q ss_pred HHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCC-H
Q 044999 159 LLEILSALAL--LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGD-W 235 (461)
Q Consensus 159 a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~-~ 235 (461)
|+.++..++. ....... -...++.++..+.+++..+|..|+.+++.++...+... -...++.++..+.+.+ .
T Consensus 154 al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCch
Confidence 9999999872 1111111 12356777788888899999999999999987654321 1235777777776443 4
Q ss_pred HHHHHHHHHHHHHhcCccchhhhh--hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc--ccH---HHHHHHHHHHhc
Q 044999 236 TTKLVAGNTLGVVAAHVEYITPVA--EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE--ANA---NAIAEHLVRILR 308 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~---~~i~~~l~~ll~ 308 (461)
..+..++.++..++..... .+. -..+++.++..+.+.++++|..+..++..++... +.. ..+.+.+++.+.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~ 306 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhC
Confidence 5667788888888765211 121 1367899999999889999999999998885432 222 222255544442
Q ss_pred c-------------------------------------CCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcC
Q 044999 309 E-------------------------------------GDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRG 350 (461)
Q Consensus 309 ~-------------------------------------~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~ 350 (461)
. ..+++|..|+.++..++.. ++....+ -...++.++..+.+
T Consensus 307 ~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 307 YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKE 385 (1230)
T ss_dssp CC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSC
T ss_pred CCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCC
Confidence 1 1235788999999999864 3222222 24578888888888
Q ss_pred CCHHHHHHHHHHHHHhcCC--h---------------hhHHHH--HhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 351 ENDEVREKVSGAIAQLSYN--E---------------ADRVAL--ADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 351 ~~~~v~~~a~~~L~~l~~~--~---------------~~~~~~--~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
.++.++..+..++..+... . +....+ .-...++.+.+.+++.++.++..++.++..++..
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 8899999999888877651 1 111111 1123456666678889999999999999988654
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=5.5e-12 Score=107.29 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=158.4
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
+..+.+++.|.++++.+|..|+.+|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 467889999999999999999999998743 3468999999999999999999999988753
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcC
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG 339 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g 339 (461)
...++.|..++.++++.++..++.+|.++... ...+.+..++.+.++.++..|+.+|+.+.. .+
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~ 138 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----RAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ER 138 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HH
Confidence 24589999999999999999999999998542 233778889999999999999999999853 35
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.++.|..++.++++.++..++.+|+.+.. + ..++.|..+++++++.++..|..+|..+.
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGG-E---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999953 1 24788899999999999999999998874
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=7.8e-12 Score=106.35 Aligned_cols=185 Identities=15% Similarity=0.176 Sum_probs=158.5
Q ss_pred cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHH
Q 044999 96 SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRV 175 (461)
Q Consensus 96 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 175 (461)
.+..+.+++.|+++++.++..++..+..+.. .+.++.|++++.++++.+|..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3457889999999999999999999987653 2468899999999999999999999987752
Q ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccch
Q 044999 176 LICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYI 255 (461)
Q Consensus 176 ~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 255 (461)
...++.++..+.++++.+|..++.+|+.+.. ...++.|+.++.++++.++..++.+|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2568889999999999999999999999843 3478889999999999999999999999853
Q ss_pred hhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 256 TPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 256 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
...++.|..++.++++.++..++.+|..+.. ....+.|..++.++++.++..|..+|..+.
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999842 334478888889999999999999999874
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.44 E-value=1.6e-10 Score=114.95 Aligned_cols=361 Identities=17% Similarity=0.139 Sum_probs=251.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchh
Q 044999 11 AFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGAL 89 (461)
Q Consensus 11 ~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 89 (461)
....+.+-+.+.++.+|-.|+++++++..+ .+.+ .++.+.+.+.+ .+.++-+++.|+.++.++... +++.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~~----e~~~~l~~~v~~~l~~----~d~~~~VRK~A~~al~kl~~~-~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGSR----EMAEAFAGEIPKILVA----GDTMDSVKQSAALCLLRLYRT-SPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH----HHHHHHTTHHHHHHHC----SSSCHHHHHHHHHHHHHHHHH-CGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHh-Chhh
Confidence 346777888899999999999999999832 2444 88889999843 335788888899999999985 3322
Q ss_pred HHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH----HHhcCC-------------C
Q 044999 90 ATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI----DLLNSC-------------N 152 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~----~ll~~~-------------~ 152 (461)
+...+.++.+.++|.+.++.++..+...+..++..++.. + ...++.++ +++... +
T Consensus 183 ---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 ---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp ---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred ---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 222478999999999999999999998888888766432 1 12233333 443221 5
Q ss_pred hHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHc---------CCCH--HHHHHHHHHHHHhhcCchhHHHHHh
Q 044999 153 DGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVS---------FGSM--VSRERACQAIGLLAVTGRARRLLVE 219 (461)
Q Consensus 153 ~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~---------~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~ 219 (461)
+-.+...++.+..++. +++.+..+.+ .+..++..+. +.+. .+...+..++..+...++...
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~---- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV---- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH----
Confidence 7888899999998884 3455554444 3444443321 2233 788889999998864332222
Q ss_pred cCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHH
Q 044999 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANA 298 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~ 298 (461)
.++..|..++.+.++.++..++..|..++...+....+ ....+.++..++ +++..++..++.+|..++. +.+...
T Consensus 329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~ 404 (621)
T 2vgl_A 329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ 404 (621)
T ss_dssp -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH
T ss_pred -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH
Confidence 25677888888899999999999999998763222222 234677888888 8899999999999999974 346677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHH
Q 044999 299 IAEHLVRILREGDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVAL 376 (461)
Q Consensus 299 i~~~l~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 376 (461)
++..+...+...+.+.+..++..++.++. .+..... .+..|++++......+...+...+..+.. .++.+...
T Consensus 405 Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~ 479 (621)
T 2vgl_A 405 IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA 479 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH
Confidence 77888888888899999999999999983 3433333 34567777775544455556666666655 55555544
Q ss_pred HhCCChHHHHHhccCC--CHHHHHHHHHHHHHhc
Q 044999 377 ADAGAVPIMIELLHDE--SEELRDNAAESLINFS 408 (461)
Q Consensus 377 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~ 408 (461)
+..|.+.+.+. ...+...++|++...+
T Consensus 480 -----~~~l~~~l~~~~~~~~li~~~~wilGEy~ 508 (621)
T 2vgl_A 480 -----AKTVFEALQAPACHENLVKVGGYILGEFG 508 (621)
T ss_dssp -----HHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence 34566666442 3455566667777664
No 65
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=99.00 E-value=4.2e-07 Score=84.38 Aligned_cols=310 Identities=14% Similarity=0.106 Sum_probs=199.4
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCc---hhHHHHHhcCCH-HHHHh-cCCCCCHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADG---ALATEIGQSGVI-NSVLR-LFPQSDDSFRTVLVKCLRV 123 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~l-~~L~~-ll~~~~~~~~~~~~~~l~~ 123 (461)
....++++|+. . ...+..+.....+..+... ++ .....+.+.... ..+.. .+..+++-....+..++..
T Consensus 78 ~~~~~l~lL~~----~-~~~d~vqYvL~Li~DlL~~-~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~l 151 (480)
T 1ho8_A 78 TLIPLIHLLST----S-DNEDCKKSVQNLIAELLSS-DKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSL 151 (480)
T ss_dssp THHHHHHHHHS----C-CCHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----c-ChHHHHHHHHHHHHHHHhc-CcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHH
Confidence 67889999985 3 3456777777888888875 43 333343443332 22333 3333444444444444444
Q ss_pred HhccChhhHHHHHHcCCHH--HHHHHhcCC-ChHHHHHHHHHHHHhhCChHHHHHHHhcC--CHHHHHHHHcC-------
Q 044999 124 FVTFGNENRVIVARNGGLE--IVIDLLNSC-NDGTRRYLLEILSALALLREVRRVLICLG--GLRYLVEAVSF------- 191 (461)
Q Consensus 124 l~~~~~~~~~~~~~~g~i~--~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~l~~l~~~l~~------- 191 (461)
++............ .+. .++..+.+. +.+.+..++.+|..+...++.|..+.+.+ .++.++.++..
T Consensus 152 l~~~~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 152 LVQNGLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp HTSTTTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred HhccCCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 44322221111111 122 355555553 44567789999999999999999998754 36666554431
Q ss_pred --------C--CHHHHHHHHHHHHHhhcCchhHHHHHhcCCh--HHHHHhcc-cCCHHHHHHHHHHHHHHhcCc-cchhh
Q 044999 192 --------G--SMVSRERACQAIGLLAVTGRARRLLVELGVI--PGLVELFH-IGDWTTKLVAGNTLGVVAAHV-EYITP 257 (461)
Q Consensus 192 --------~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i--~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~ 257 (461)
+ ...+++.++-+++-++..++....+...+.. +.|+.+++ +..+++.+.++.+|.|+.... +....
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 1 2467899999999999999887777766543 56677777 557889999999999998763 22222
Q ss_pred -----hhhcCCHHHHHHHhCCC---ChhHHHHHHH-------HHHHhccCcccHHHHH----------------------
Q 044999 258 -----VAEAGAIPLYAELLQGP---DSTGKEISED-------VFCILAVSEANANAIA---------------------- 300 (461)
Q Consensus 258 -----~~~~g~i~~L~~ll~~~---~~~~~~~a~~-------~L~~l~~~~~~~~~i~---------------------- 300 (461)
++..++ +.++..|... |+++.+-.-. ....++..++...++.
T Consensus 310 ~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k 388 (480)
T 1ho8_A 310 VIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 388 (480)
T ss_dssp HHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred HHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence 222344 4455555433 6665443222 1222233333333322
Q ss_pred ---------HHHHHHhcc----------CCHHHHHHHHHHHHHhhC-CCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHH
Q 044999 301 ---------EHLVRILRE----------GDNEANAAAADVLWDLAG-YKHSVPVIRNSGAIPILVNLLRGENDEVREKVS 360 (461)
Q Consensus 301 ---------~~l~~ll~~----------~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~ 360 (461)
..|+++|.+ .++.+..-||.=|+.++. +|..+..+-+.|+=+.+++++.+++++|+..|+
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL 468 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 468 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 788888863 368888999999999995 688888888999999999999999999999999
Q ss_pred HHHHHhc
Q 044999 361 GAIAQLS 367 (461)
Q Consensus 361 ~~L~~l~ 367 (461)
.|+..+.
T Consensus 469 ~avQklm 475 (480)
T 1ho8_A 469 KATQAII 475 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887764
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.96 E-value=1.6e-08 Score=101.89 Aligned_cols=216 Identities=15% Similarity=0.049 Sum_probs=158.9
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHH-HhcCCCCCHHHHHHHHHHHHHHhcc
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSV-LRLFPQSDDSFRTVLVKCLRVFVTF 127 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~~~~~~~~l~~l~~~ 127 (461)
.|.++++.|++ .++..+..|+.+|.+|+. +...+..+...|++..+ ..+|.+++.+|+..++.+|.+|+.+
T Consensus 35 ~i~Pll~~L~S------~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 35 KILPVLKDLKS------PDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp TTHHHHHHHSS------SCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCC------CCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 66677788886 344578889999999998 78888888888888765 5678999999999999999999974
Q ss_pred -ChhhHHHHHHcCCHHHHHHHhcCCC---------------------hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHH
Q 044999 128 -GNENRVIVARNGGLEIVIDLLNSCN---------------------DGTRRYLLEILSALA-LLREVRRVLICLGGLRY 184 (461)
Q Consensus 128 -~~~~~~~~~~~g~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~ 184 (461)
.++.+..+...|+++.|..+++... ..+...++.+|++++ .+.+....+...++++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 5788899999999999998875311 134456788999999 66777778888899999
Q ss_pred HHHHHcCC---CHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhc--ccCCHHHHHHHHHHHHHHhcC------c
Q 044999 185 LVEAVSFG---SMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELF--HIGDWTTKLVAGNTLGVVAAH------V 252 (461)
Q Consensus 185 l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~------~ 252 (461)
++.+|.+. ..+++..++.+|..++...+. ...+.+.+....+..++ ...+...+..+++.|.|+... .
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s 266 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHS 266 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcc
Confidence 99988543 468999999999999998877 66777765433322222 233334566788899987532 2
Q ss_pred cchhhhhhcCCHHHHHHHhC
Q 044999 253 EYITPVAEAGAIPLYAELLQ 272 (461)
Q Consensus 253 ~~~~~~~~~g~i~~L~~ll~ 272 (461)
...........++.+...+.
T Consensus 267 ~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 267 PGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp CCGGGCSGGGTHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhhhhhHh
Confidence 23333334445566555543
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.96 E-value=4.3e-06 Score=84.63 Aligned_cols=308 Identities=12% Similarity=0.036 Sum_probs=199.6
Q ss_pred CHHHHHhcCC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCC--------hHHHHHHHHHHHHh
Q 044999 98 VINSVLRLFP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCN--------DGTRRYLLEILSAL 166 (461)
Q Consensus 98 ~l~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~~l 166 (461)
++..|.+.|. ++++.++..++..+..+...... . ++..|...+.+.+ +.++..|+-.|+-.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H------HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4677777777 56777788888777765543321 1 3566777776554 67888888888876
Q ss_pred hCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc-ccCCHHHHHHHHHHH
Q 044999 167 ALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF-HIGDWTTKLVAGNTL 245 (461)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L 245 (461)
....... .+++.|...+.+++..++..|+.+|+.+-....+.. ++..|+..+ .+.+..+++.++.+|
T Consensus 465 ~~GS~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 465 AMGSANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp STTCCCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hcCCCCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHH
Confidence 5221111 135667888887777778888888887643333322 244555543 356778999999999
Q ss_pred HHHhcCccchhhhhhcCCHHHHHHHhC-CCChhHHHHHHHHHHHhccCcccHHHHHHHHHHH-hccCCHHHHHHHHHHHH
Q 044999 246 GVVAAHVEYITPVAEAGAIPLYAELLQ-GPDSTGKEISEDVFCILAVSEANANAIAEHLVRI-LREGDNEANAAAADVLW 323 (461)
Q Consensus 246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~l-l~~~~~~~~~~a~~~L~ 323 (461)
+.+.... ...++.+++.|. +.++.+|..++.++..-.....+...+ +.|++. ..+.++.+|..|+.+|+
T Consensus 533 Gll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI-q~LL~~~~~d~~d~VRraAViaLG 603 (963)
T 4ady_A 533 ALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV-KRLLHVAVSDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHHH
Confidence 9886542 223567777765 568888888887776554444443333 444444 45668899999999999
Q ss_pred HhhCCCCchhHHhhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHH
Q 044999 324 DLAGYKHSVPVIRNSGAIPILVNL-LRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAE 402 (461)
Q Consensus 324 ~l~~~~~~~~~l~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 402 (461)
.+....+ ..++.++.. .++.++.+|..+..+|+.++...... .++..|..+.++.++.+++.|+.
T Consensus 604 lI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ 669 (963)
T 4ady_A 604 FVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMI 669 (963)
T ss_dssp HHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred hhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHH
Confidence 9875432 345566664 45789999999999999998732221 13677888889999999999999
Q ss_pred HHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhh-hc-hhHHHHHHHHHhHhhh
Q 044999 403 SLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIR-AS-DDLMARSMRRMSIEQL 455 (461)
Q Consensus 403 ~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~ 455 (461)
+|..+.....+. ..+.+..+...+.+.- +. .+.+.++.++.+...+
T Consensus 670 ALG~Ig~gtnna-------~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 670 ALSMILIQQTEK-------LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHSTTCCTT-------TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccc-------cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 999996443222 0011111222221111 11 2678899888887765
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.96 E-value=9.4e-08 Score=78.85 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=159.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhh
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITP 257 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 257 (461)
+.+..+..++.+.|+.++..++.+|..+....+. .....-...++.++.++++.+..+...|..+|..+-.+ +-..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4688899999999999999999999999877544 22223345889999999999999999999999999887 444444
Q ss_pred hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhh
Q 044999 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRN 337 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~ 337 (461)
+.. .+.++.++++++++-++..++..+..+.... ....+...+..++.|.+++++..++.++.+++...+....+
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~-- 187 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL-- 187 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--
Confidence 432 3588999999999999999999999993322 23445588888899999999999999999999643322211
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hc-cCCCHHHHHHHHHH
Q 044999 338 SGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIE-LL-HDESEELRDNAAES 403 (461)
Q Consensus 338 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll-~~~~~~~~~~a~~~ 403 (461)
.+++..+-.++++.++.+++.|+.++..+...|-..+.+-+--.+...+. +. ..+.|.++..|-..
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 13455588899999999999999999999885432111111111222222 22 34677777666543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.92 E-value=3.7e-08 Score=89.46 Aligned_cols=279 Identities=10% Similarity=0.038 Sum_probs=160.0
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA 88 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 88 (461)
...|...++++.+.|...|+..-..+..++.. ..+.+ =++..+.+-+++ +++-++-.|.++|+++.. ++-
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~------~N~~iR~lALRtL~~I~~--~~m 136 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTG------KEDSYRGPAVRALCQITD--STM 136 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHS------SCHHHHHHHHHHHHHHCC--TTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCC------CcHhHHHHHHHHHhcCCC--HHH
Confidence 34566677888888988888888888877722 11121 377888888886 344455559999999997 332
Q ss_pred hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999 89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL 168 (461)
Q Consensus 89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 168 (461)
.. . ..+.+.+.+.+.++.|++.|+.+...+...+++.. + +.++.+-+++.+.++.++..|+.++..+..
T Consensus 137 ~~-~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 137 LQ-A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HH-H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HH-H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 22 2 34668889999999999999999999998776543 2 588899999999999999999999999985
Q ss_pred ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHH
Q 044999 169 LREVRRVLICLGGLRYLVEAVSFG---SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTL 245 (461)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 245 (461)
++.. .+..++..+... ++-.+...++.+..+...++.. .....++.+...+++.++.+...|+.++
T Consensus 206 ~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 206 NDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp TCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHH
T ss_pred hchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 4321 233444444442 5666666666665555443111 1234677888888999999999999999
Q ss_pred HHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 044999 246 GVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVRILREGDNEANAAAADVLW 323 (461)
Q Consensus 246 ~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~ll~~~~~~~~~~a~~~L~ 323 (461)
..+...+.. .. ..++..+..++.+.++.+|..|+..|..++...+. -......+.+++++++..+...|+..|.
T Consensus 275 ~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 275 VNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp TC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 888653211 11 23356677778889999999999988888654332 2223377778888888777777766554
No 70
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.90 E-value=1.1e-08 Score=103.30 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=145.2
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh--hHHHHHH-hhccCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA--TIPILAR-LLGENNFSGNLTRSIQQAAAYCLKQIASQ 84 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~--~i~~l~~-~l~~~~~~~~~~~~~~~~a~~~L~~l~~~ 84 (461)
++.+.++++.++|.++..|..|+.+|++|+ ++..+..+.+ ++..++. +|.. ++.+++..|+.+|.+|+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D------~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD------NNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC------SCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC------CCHHHHHHHHHHHHHHHhh
Confidence 345567888899999999999999999999 7666666555 7777655 4543 4677888899999999986
Q ss_pred CCchhHHHHHhcCCHHHHHhcCCCCC---------------------HHHHHHHHHHHHHHhccChhhHHHHHHcCCHHH
Q 044999 85 ADGALATEIGQSGVINSVLRLFPQSD---------------------DSFRTVLVKCLRVFVTFGNENRVIVARNGGLEI 143 (461)
Q Consensus 85 ~~~~~~~~~~~~~~l~~L~~ll~~~~---------------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~ 143 (461)
+.++.+..+...|+++.|..+++... .++...+...+..++..+.+....+...++++.
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 56788899999999999988775311 122345666777899888888888999999999
Q ss_pred HHHHhcCC---ChHHHHHHHHHHHHhh-CChHHHHHHHhcCC---HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 044999 144 VIDLLNSC---NDGTRRYLLEILSALA-LLREVRRVLICLGG---LRYLVEAVSFGSMVSRERACQAIGLLA 208 (461)
Q Consensus 144 L~~ll~~~---~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~---l~~l~~~l~~~~~~~~~~a~~~L~~l~ 208 (461)
|+..|.+. ..+++..|+.+|..++ .+++....+.+.+. +..+..+..+ +...+..+++++.|+.
T Consensus 187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 99987543 3589999999999999 56677777777653 3333333333 3345677888888874
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.88 E-value=1.8e-07 Score=77.19 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=147.9
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHH
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALALL--REVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRL 216 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 216 (461)
.+..+..++...|+.++..++.+|..+... ...+...++ ..++.++.++.+.|+.+.-.|++++..+-.+.+- ...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 577899999999999999999999999833 444444444 3799999999999999999999999999887765 554
Q ss_pred HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc---
Q 044999 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE--- 293 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--- 293 (461)
+.. ....+..++.++++-.+..++..++.+......+ +++..+.+++.+.+.+++..+..+|.+++...
T Consensus 113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 444 5788899999999999999999999993323232 23688999999999999999999999996533
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 044999 294 ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYK 329 (461)
Q Consensus 294 ~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~ 329 (461)
+.-..+...+-.++++.++.+++.|+.++-.+...|
T Consensus 185 ~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 334445577888999999999999999999998764
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.87 E-value=2.8e-06 Score=67.16 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=163.3
Q ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC-cc
Q 044999 177 ICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH-VE 253 (461)
Q Consensus 177 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~-~~ 253 (461)
.+..++..++.+|.++-+.++..|+..+.+++...+. ...+ +..|+.+++ ++.-........+++.++.- |+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 3445788999999999999999999999999988876 4443 556677766 55556656677788888864 33
Q ss_pred chhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999 254 YITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV-SEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 254 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
.-.. .+|.+..-..-+++.++.+...+|..++. +|+.-..++..+..++.+++..-+-.|+..+..+..+ .
T Consensus 104 ~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen---~ 175 (253)
T 2db0_A 104 LVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---S 175 (253)
T ss_dssp HHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---T
T ss_pred HHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---C
Confidence 3333 37888888888899999999999999964 5555556668899999999988888888877777432 2
Q ss_pred hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
...+. -.+|.|..+|.+.+.-|+..+..+|.+++. ++..|..+. .-++-+.+.+..++.....+|..+..
T Consensus 176 ~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 176 FKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 22222 378999999999999999999999999999 887665543 23445677888888888888887753
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.81 E-value=5.7e-08 Score=84.87 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=139.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcC-chh-HHHHHhcCChHHHHHhcc-cCCHHHHHHHHHHHHHHhcC--ccchhh
Q 044999 183 RYLVEAVSFGSMVSRERACQAIGLLAVT-GRA-RRLLVELGVIPGLVELFH-IGDWTTKLVAGNTLGVVAAH--VEYITP 257 (461)
Q Consensus 183 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~--~~~~~~ 257 (461)
+.+.+.+.+.++..|..++..|..+... +.. ...+ ..+++.|...+. +.+..++..|+.++..++.. +....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence 4577888899999999999999998765 221 1111 134677788884 88999999999999999965 21111
Q ss_pred hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CC--chh
Q 044999 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--KH--SVP 333 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~--~~~ 333 (461)
.-..++|.++..+.+.++.+|..+..+|..+..... -..+.+.+...+++.++.++..++..|..+... ++ ...
T Consensus 95 -~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 95 -YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp -HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 113468999999999999999999999999976544 344558999999999999999999999996543 22 122
Q ss_pred HHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 334 VIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 334 ~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
.+ ...+|.|..++.+.++++|..|..+++.++.
T Consensus 173 ~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 173 LL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 22 3578999999999999999999999999986
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.74 E-value=1.4e-06 Score=79.08 Aligned_cols=272 Identities=12% Similarity=0.064 Sum_probs=157.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL 179 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 179 (461)
..+++++.++|...++..-..+..++...++ .+ =++..+.+=++++++-+|..|+++++++...+-.. .
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~-~---- 139 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ-A---- 139 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH-H----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH-H----
Confidence 4567899999999777776666677755322 12 24677888889999999999999999997443222 2
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
..+.+-+.+.+.++-+|..|+-+..++....+.. + .+++..+-+++.+.++-++.+|+.+|..+..++ +.
T Consensus 140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~--- 209 (355)
T 3tjz_B 140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL--- 209 (355)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH---
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH---
Confidence 3556778889999999999999999998766652 2 258899999999999999999999999998653 11
Q ss_pred hcCCHHHHHHHhCCC---ChhHHHHHHHHHHHhccCc--ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhH
Q 044999 260 EAGAIPLYAELLQGP---DSTGKEISEDVFCILAVSE--ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPV 334 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~--~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 334 (461)
.+..++.-+... ++-.+-..+..+..+...+ .....+.+.+..+|++.++.+..+|+.++..+...+..
T Consensus 210 ---a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--- 283 (355)
T 3tjz_B 210 ---AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--- 283 (355)
T ss_dssp ---HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred ---HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---
Confidence 133444444332 3444444444444444333 23455558888899999999999999999998653221
Q ss_pred HhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999 335 IRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 335 l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
. ...++..|..++.++++.+|-.|+..|..+.. +|+. +.. +-..+.+++.+++..+...|...|
T Consensus 284 ~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v~~--~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---VTA--CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -----CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---HHH--HHHHHHHHccCCcHhHHHHHHHHh
Confidence 1 12346677788888899999999998888887 5542 222 346678888888888877776655
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.72 E-value=3.3e-05 Score=61.12 Aligned_cols=216 Identities=13% Similarity=0.130 Sum_probs=161.4
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhcCCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCch
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVSKFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGA 88 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 88 (461)
++.++.+++++.++-=.|+.+|...+..+++. ..+.+.-.+.+|+.+++. ++. .......+.++..++.. .++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-~~el~epl~~kL~vm~~k----sEa-IpltqeIa~a~G~la~i-~Pe 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKT-REDLYEPMLKKLFSLLKK----SEA-IPLTQEIAKAFGQMAKE-KPE 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHH----CCS-HHHHHHHHHHHHHHHHH-CHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHhh----ccc-CchHHHHHHHHhHHHHh-CHH
Confidence 45667778877777778999999999999822 122223378888889886 554 33433456899999985 333
Q ss_pred hHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhC
Q 044999 89 LATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALAL 168 (461)
Q Consensus 89 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 168 (461)
... +.+|.+..-.+-+++.++...++++..++..+++.-..+ +..+..++.+++..-+..|+..+..+..
T Consensus 104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 222 346888888889999999999999999998887765554 4458889999998888888888887773
Q ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHH
Q 044999 169 LREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGV 247 (461)
Q Consensus 169 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 247 (461)
+.. +. -...+|.++.+|.+.|.-+|..+..+|.+++..++. +.. +..-++-+.+.+..++......|..
T Consensus 174 n~~--~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 NSF--KY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTH--HH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cCc--cc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 321 11 135799999999999999999999999999998877 433 4455666778888888888888888
Q ss_pred HhcC
Q 044999 248 VAAH 251 (461)
Q Consensus 248 l~~~ 251 (461)
+...
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7654
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.69 E-value=8.1e-05 Score=78.46 Aligned_cols=378 Identities=10% Similarity=0.023 Sum_probs=212.1
Q ss_pred HHHHHHHhhc--CCHHHHHHHHHHHHhhc--CCC-------chhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHH
Q 044999 12 FNRFEQAVVS--GSEALQVKALTKLARVS--KFA-------PQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLK 79 (461)
Q Consensus 12 ~~~l~~ll~~--~~~~~~~~a~~~l~~la--~~~-------~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~ 79 (461)
...+.+.+.+ .+..+|..|+..|.+.. +.. ....-+. +=..++..+.. . ++.++...+.++.
T Consensus 37 ~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~----~--~~~ir~~l~~~ia 110 (960)
T 1wa5_C 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS----L--PNNLQVQIGEAIS 110 (960)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH----S--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh----C--CHHHHHHHHHHHH
Confidence 3456666644 36789999999998876 221 1112222 33455666654 2 2456666888898
Q ss_pred HHHhcCCchhHHHHHh--cCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC------hhhHHHHH--HcCCHHHHHHH--
Q 044999 80 QIASQADGALATEIGQ--SGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG------NENRVIVA--RNGGLEIVIDL-- 147 (461)
Q Consensus 80 ~l~~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~~--~~g~i~~L~~l-- 147 (461)
.++.. +. .+ .+.++.|++.++++++..+..+..++..++... ++.+..+. -....+.++.+
T Consensus 111 ~ia~~-d~------p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~ 183 (960)
T 1wa5_C 111 SIADS-DF------PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK 183 (960)
T ss_dssp HHHHH-HS------TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hC------ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88873 11 12 346899999999888777777887787777522 12222111 11123333332
Q ss_pred -----hcCCCh---------HHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC------C---------HHH
Q 044999 148 -----LNSCND---------GTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG------S---------MVS 196 (461)
Q Consensus 148 -----l~~~~~---------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~------~---------~~~ 196 (461)
+..... .+...+++++..+.. .++.-.... ...++.+..++... + +.+
T Consensus 184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~v 262 (960)
T 1wa5_C 184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKV 262 (960)
T ss_dssp HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHH
Confidence 443321 222335666666541 122111100 12345555555431 1 246
Q ss_pred HHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcc-----cCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHH-
Q 044999 197 RERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH-----IGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYA- 268 (461)
Q Consensus 197 ~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~- 268 (461)
+.+++.++..+...... ...+ ..+++..+..+. ..++.+...++..+..++..+..+..+.....++.++
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence 78888888887754443 2222 234555555554 3456788888988888876543333221112233333
Q ss_pred ----HHhCC-----------------------CChhHHHHHHHHHHHhccCcccHHHHH----HHHHHHhc------cCC
Q 044999 269 ----ELLQG-----------------------PDSTGKEISEDVFCILAVSEANANAIA----EHLVRILR------EGD 311 (461)
Q Consensus 269 ----~ll~~-----------------------~~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~~ll~------~~~ 311 (461)
..+.- .....|..|..+|..++.... ..+. +.+.+.+. +.+
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHC----C
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHhccCcchh
Confidence 23210 012356677777877765443 2222 55555565 567
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHhhc-----CCHHH----HHHhhcCC---CHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 044999 312 NEANAAAADVLWDLAGYKHSVPVIRNS-----GAIPI----LVNLLRGE---NDEVREKVSGAIAQLSYNEADRVALADA 379 (461)
Q Consensus 312 ~~~~~~a~~~L~~l~~~~~~~~~l~~~-----g~i~~----L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 379 (461)
+..++.|+.+++.++........-... ...+. ++..+.++ ++.+|..++++++.++..- ..+.+.
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~-- 495 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLI-- 495 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHH--
Confidence 889999999999998531111100000 22222 33334555 8999999999999998721 122222
Q ss_pred CChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 380 GAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 380 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
..++.+++.+.++++.++..|+.+|.+++..
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 2477888888888899999999999999874
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.68 E-value=4.2e-07 Score=79.30 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=138.5
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHh-CCCChhHHHHHHHHHHHhccC--cccH--
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELL-QGPDSTGKEISEDVFCILAVS--EANA-- 296 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~--~~~~-- 296 (461)
-+.+.+.+.+.++..|..|+..|..+... +.....-. ..+++.|...+ ++.+..++..++.++..|+.. +...
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34678888899999999999999998765 32211111 24577888889 488999999999999999642 2222
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-C-hh--
Q 044999 297 -NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-N-EA-- 371 (461)
Q Consensus 297 -~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~-~~-- 371 (461)
..+.+.++..+.+.++.+|..|..+|..+...... ...++.+...+.+.++.+|..++..|..+.. . ++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 23339999999999999999999999999865331 1357778899999999999999999999654 2 33
Q ss_pred hHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 044999 372 DRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 372 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 411 (461)
....+. ..+|.|..++.+.++++|..|..++..++..-
T Consensus 170 ~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 170 NKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 233332 47899999999999999999999999887443
No 78
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.66 E-value=6.3e-06 Score=76.56 Aligned_cols=309 Identities=10% Similarity=0.087 Sum_probs=197.0
Q ss_pred CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccCh---hhHHHHHHcCCHH-HHHHH-hcCCChHHHHHHHHHHHHhh-CC
Q 044999 97 GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGN---ENRVIVARNGGLE-IVIDL-LNSCNDGTRRYLLEILSALA-LL 169 (461)
Q Consensus 97 ~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~g~i~-~L~~l-l~~~~~~~~~~a~~~L~~l~-~~ 169 (461)
.+...++++|+ ..+.++.+.....+..+...++ .....+.+..... .+... +..+++-....+..++..++ ..
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888877 4667777777777777777665 3334444433222 23332 33333445566666655554 11
Q ss_pred ---hHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhccc-----------
Q 044999 170 ---REVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELG--VIPGLVELFHI----------- 232 (461)
Q Consensus 170 ---~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~ll~~----------- 232 (461)
.+....+.... .++..|... +.+.+..++.++..|...++.|..+.+.+ .++.++.++..
T Consensus 157 ~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 12222222211 355556553 45667789999999999999988887643 35666544331
Q ss_pred ----C--CHHHHHHHHHHHHHHhcCccchhhhhhcCCH--HHHHHHhCCC-ChhHHHHHHHHHHHhccCcc-c----HH-
Q 044999 233 ----G--DWTTKLVAGNTLGVVAAHVEYITPVAEAGAI--PLYAELLQGP-DSTGKEISEDVFCILAVSEA-N----AN- 297 (461)
Q Consensus 233 ----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i--~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~-~----~~- 297 (461)
. ....+..++-+++-|+..++....+...++. +.|+.+++.. .+.+.+-++.+|.|+..... . ..
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 2456789999999999997777777766643 5677777654 67888999999999965441 1 12
Q ss_pred HHH----HHHHHHhccC---CHHHHHHHHH-------HHHHhhC---------------CCCch---------hHHhhc-
Q 044999 298 AIA----EHLVRILREG---DNEANAAAAD-------VLWDLAG---------------YKHSV---------PVIRNS- 338 (461)
Q Consensus 298 ~i~----~~l~~ll~~~---~~~~~~~a~~-------~L~~l~~---------------~~~~~---------~~l~~~- 338 (461)
.+. ..+++.|... |+++.+..-. .+..++. +|..+ ..+-+.
T Consensus 314 ~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~ 393 (480)
T 1ho8_A 314 LLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDN 393 (480)
T ss_dssp HHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGG
T ss_pred HHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcc
Confidence 222 4555666443 5554332211 1111211 12221 122221
Q ss_pred -CCHHHHHHhhcC----------CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHH
Q 044999 339 -GAIPILVNLLRG----------ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLIN 406 (461)
Q Consensus 339 -g~i~~L~~ll~~----------~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 406 (461)
..+..|+++|.+ .++.+..-|+.=++.+++ .|..+..+-+.|+=..+++++.+++++++.+|..++..
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 247889999973 357788888999999999 99999999999999999999999999999999999887
Q ss_pred hc
Q 044999 407 FS 408 (461)
Q Consensus 407 l~ 408 (461)
+.
T Consensus 474 lm 475 (480)
T 1ho8_A 474 II 475 (480)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.9e-07 Score=79.49 Aligned_cols=184 Identities=5% Similarity=0.024 Sum_probs=136.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH-hhcCchh-HHHHHh-cCChHHHHHhc-ccCCHHHHHHHHHHHHHHhcC-c-cchhhh
Q 044999 185 LVEAVSFGSMVSRERACQAIGL-LAVTGRA-RRLLVE-LGVIPGLVELF-HIGDWTTKLVAGNTLGVVAAH-V-EYITPV 258 (461)
Q Consensus 185 l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~-~~~~~~-~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~ 258 (461)
+.+.+.+.++..|..++..|.. +....+. ...-.+ ...+..|...+ ++.+..++..|+.+|..++.. . +.-..-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788999999999999999 8643211 100001 12467777788 688999999999999999964 2 111101
Q ss_pred hhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCc------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999 259 AEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSE------ANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 259 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
...-++|.+++.+++..+.++..+..+|..+...- ..-..+.+.+...+++.++.+++.++.+|..+.......
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 11235899999999999999999999988885432 224456688999999999999999999999998542221
Q ss_pred -hH--Hhh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 333 -PV--IRN-SGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 333 -~~--l~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
.. -.- ...+|.|.+++.+.++.+|..|..++..++.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 122 5789999999999999999999999999876
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.59 E-value=0.00011 Score=74.66 Aligned_cols=311 Identities=12% Similarity=0.046 Sum_probs=196.1
Q ss_pred HHhHHHHHHHhh---cCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCC-CCCCC-cHHHHHHHHHHHHHHH
Q 044999 9 EEAFNRFEQAVV---SGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENN-FSGNL-TRSIQQAAAYCLKQIA 82 (461)
Q Consensus 9 ~~~~~~l~~ll~---~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~-~~~~~-~~~~~~~a~~~L~~l~ 82 (461)
++.+..+.+-+. ++++.++.-|+.+||.+. .... +++..|...|..+. ..++. .+.++..|+..|.-..
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 345666666666 678899999999999988 3332 24566666666410 01111 1334444777887765
Q ss_pred hc-CCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH-hcCCChHHHHHHH
Q 044999 83 SQ-ADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL-LNSCNDGTRRYLL 160 (461)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~ 160 (461)
-+ +++ ..++.|...+.+.+..++..++.++..+-... .+.. ++..++.. .++.+..+++.++
T Consensus 466 ~GS~~e---------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 466 MGSANI---------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp TTCCCH---------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred cCCCCH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHH
Confidence 42 112 13466777777777666667777776432211 1111 23344443 3456778999999
Q ss_pred HHHHHhh-CChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcc-cCCHHH
Q 044999 161 EILSALA-LLREVRRVLICLGGLRYLVEAVS-FGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFH-IGDWTT 237 (461)
Q Consensus 161 ~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~ 237 (461)
..|+.+. ..++. ++.+++.|. +.++.+|..++.+++--.....+.. .++.|+..+. +.+..+
T Consensus 530 lgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 530 VGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHH
T ss_pred HHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHH
Confidence 9998876 33333 455556654 5688999998888876544444322 3565666554 667889
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHH
Q 044999 238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANA 316 (461)
Q Consensus 238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~ 316 (461)
+..|+.+|+.+....+ ..++.++.+ .++.++.+|..+..+|+.++...... .+++.|..+..+.++.|+.
T Consensus 595 RraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-SAIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp HHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-HHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-HHHHHHHHHccCCCHHHHH
Confidence 9999999999876532 235666664 46779999999999999997655543 3446788888889999999
Q ss_pred HHHHHHHHhhCCCCch--hHHhhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHh
Q 044999 317 AAADVLWDLAGYKHSV--PVIRNSGAIPILVNLLRG--ENDEVREKVSGAIAQL 366 (461)
Q Consensus 317 ~a~~~L~~l~~~~~~~--~~l~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l 366 (461)
.|+.+|+.+.....+. ..+. +....|..+..+ .++..+-.+..+.+-+
T Consensus 666 ~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 666 AAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999999998542221 1111 133445566654 3455666665555544
No 81
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=3.9e-08 Score=76.80 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=92.7
Q ss_pred cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCC
Q 044999 261 AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGA 340 (461)
Q Consensus 261 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~ 340 (461)
...++.+..+++++++.+|..++.+|.++.... .+.|+.++.+.++.+|..|+++|+++.. ...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~------~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a 74 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDEA------FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERA 74 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSSTT------HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH------HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHH
Confidence 355788999999999999999988888774321 3788899999999999999999998853 235
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHh
Q 044999 341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINF 407 (461)
Q Consensus 341 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 407 (461)
++.|+.++.++++.|+..++++|.++.. + ..++.|+.+++++++.++..|..+|..+
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~-~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG-E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS-H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 8889999999999999999999999863 1 2478899999999999999999988653
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.42 E-value=6.9e-05 Score=78.99 Aligned_cols=344 Identities=13% Similarity=0.068 Sum_probs=194.6
Q ss_pred HHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC-
Q 044999 9 EEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD- 86 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~- 86 (461)
+..-..++..+.+++..+|...+.++..++ .+-+ ..+-+.++.+++.+++ + ++..+..++.+|..++..-.
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s----~--~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSN----D--DMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCS----S--CTTHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCC----C--CHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777788999999999999999 4333 2344488999999976 3 33355668999999987311
Q ss_pred ----chhHHHHH--hcCCHHHH-------HhcCCCCCH---------HHHHHHHHHHHHHhccC-hh-hHHHHHHcCCHH
Q 044999 87 ----GALATEIG--QSGVINSV-------LRLFPQSDD---------SFRTVLVKCLRVFVTFG-NE-NRVIVARNGGLE 142 (461)
Q Consensus 87 ----~~~~~~~~--~~~~l~~L-------~~ll~~~~~---------~~~~~~~~~l~~l~~~~-~~-~~~~~~~~g~i~ 142 (461)
++.+..+. -....+.+ .+.+..... .+...+++++..+...+ ++ ....+ ...++
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~ 234 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMG 234 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHH
Confidence 11111110 01112222 223444321 12233555555544211 11 11111 11234
Q ss_pred HHHHHhcCC------C---------hHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHH
Q 044999 143 IVIDLLNSC------N---------DGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVS-----FGSMVSRERAC 201 (461)
Q Consensus 143 ~L~~ll~~~------~---------~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~ 201 (461)
.+..++... + ..++..++.++..+. ..++.-.... ...++.+...+. ..++.++..++
T Consensus 235 ~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al 313 (960)
T 1wa5_C 235 IFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSL 313 (960)
T ss_dssp HHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHH
T ss_pred HHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 455555331 1 146778888888877 3333211111 124555555554 33678899999
Q ss_pred HHHHHhhcCchhHHHHHhcCChHHHH-----Hhcc---------cCC--------------HHHHHHHHHHHHHHhcCcc
Q 044999 202 QAIGLLAVTGRARRLLVELGVIPGLV-----ELFH---------IGD--------------WTTKLVAGNTLGVVAAHVE 253 (461)
Q Consensus 202 ~~L~~l~~~~~~~~~~~~~~~i~~L~-----~ll~---------~~~--------------~~~~~~a~~~L~~l~~~~~ 253 (461)
..+..++.....+..+...+.++.++ ..+. ..+ ...+..|..+|..++..-.
T Consensus 314 ~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~ 393 (960)
T 1wa5_C 314 SFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE 393 (960)
T ss_dssp HHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc
Confidence 99999876654333321112233333 2221 011 1355667777777776522
Q ss_pred chhhhhhcCCHHHHHHHhC------CCChhHHHHHHHHHHHhccCc---c----------cHHHH-HHHHHHHhccC---
Q 044999 254 YITPVAEAGAIPLYAELLQ------GPDSTGKEISEDVFCILAVSE---A----------NANAI-AEHLVRILREG--- 310 (461)
Q Consensus 254 ~~~~~~~~g~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~---~----------~~~~i-~~~l~~ll~~~--- 310 (461)
..+. ..+++.+...+. +.++..++.|+.++..++... . .-..+ ...++..+.+.
T Consensus 394 --~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~ 470 (960)
T 1wa5_C 394 --VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP 470 (960)
T ss_dssp --HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCS
T ss_pred --hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCC
Confidence 1221 112333444444 457889999999999996431 1 11122 24556666666
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 311 DNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 311 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
++-+|..|+++++.++..- . ... -...++.++..+.+.++.|+..|+.+|.+++.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~-~-~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL-T-KAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS-C-HHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CceehHHHHHHHHHHHhhC-C-HHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 8999999999999998642 1 122 22467788888888889999999999999987
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5e-06 Score=72.43 Aligned_cols=185 Identities=11% Similarity=0.186 Sum_probs=134.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHH-HhcC-ccchhhhhh-cCCHHHHHHHh-CCCChhHHHHHHHHHHHhccC---cccH
Q 044999 224 PGLVELFHIGDWTTKLVAGNTLGV-VAAH-VEYITPVAE-AGAIPLYAELL-QGPDSTGKEISEDVFCILAVS---EANA 296 (461)
Q Consensus 224 ~~L~~ll~~~~~~~~~~a~~~L~~-l~~~-~~~~~~~~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~---~~~~ 296 (461)
+.+.+.+.+.++.-|..|+..|.. +... ++....-.+ ..++..|...+ ++.+..++..|+.++..++.. +...
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 356677889999999999999999 8643 222100011 13477888888 788999999999999998642 2222
Q ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-Ch
Q 044999 297 ----NAIAEHLVRILREGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NE 370 (461)
Q Consensus 297 ----~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~ 370 (461)
..+.+.++..+.+..+.++..+..++-.++.. +.....-.-...++.|...+.++++.+|..++.+|..+.. .+
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 23339999999999999999999999988853 2111110011356778899999999999999999999987 33
Q ss_pred hhHH---HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhc
Q 044999 371 ADRV---ALADAGAVPIMIELLHDESEELRDNAAESLINFS 408 (461)
Q Consensus 371 ~~~~---~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 408 (461)
.... .......+|.|.+++.+.++++|..|..++..++
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2111 2222467999999999999999999999998876
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.38 E-value=3.9e-08 Score=76.80 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=83.9
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV 218 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 218 (461)
..++.+..+|++.++.+|..|+..|..+... .++.|+..+.++++.+|..++++|+++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 4567788888888888888888887765421 25778888888888899998888888742
Q ss_pred hcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHH
Q 044999 219 ELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCI 288 (461)
Q Consensus 219 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~ 288 (461)
...++.|+..+.++++.++..++++|.++.. ...++.|..+++++++.++..+..+|.+
T Consensus 72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1247788888888888888888888888752 2347788888888888888888777654
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.33 E-value=1.9e-05 Score=80.98 Aligned_cols=291 Identities=10% Similarity=0.090 Sum_probs=195.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCCh----HHHHHHH
Q 044999 102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLR----EVRRVLI 177 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~ 177 (461)
+++-++..+..-+..++..+..+...+...+ ....+.+..+.+.+.+.... +.|+.++..++... ..-..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3333444333335666767776654321111 11125667777777665444 89999999988322 2333343
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccC-CHHHHHHHHHHHHHHhcCccchh
Q 044999 178 CLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIG-DWTTKLVAGNTLGVVAAHVEYIT 256 (461)
Q Consensus 178 ~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~ 256 (461)
+.++.++....+....+|..|-.++..+...-..... ..++|.|+..+.+. .+..+..|+.++..++... ..
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~ 167 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KD 167 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HH
Confidence 5789999999988889998888777766543332111 23588899988754 6899999999999998753 23
Q ss_pred hhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCch
Q 044999 257 PVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANA--NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSV 332 (461)
Q Consensus 257 ~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 332 (461)
.+.. ..++|.+.+.+.+..+++...|..++..++..-+|+ ..++|.|++.+..++. ...++..|..-+...+..
T Consensus 168 ~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 168 QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC
T ss_pred HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec
Confidence 3322 367999999999999999999999999886544443 3344999999987743 334455555444333221
Q ss_pred hHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC---ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHh
Q 044999 333 PVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY---NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINF 407 (461)
Q Consensus 333 ~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l 407 (461)
.-.. .=.+|.|.+-|......++++++.++-|||+ +|.....|.. ..+|.|.+... -.+|++|..+..++..|
T Consensus 246 ~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 246 PATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred chhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 1111 1246778888888888899999999999999 5544444443 46888888774 47999999999988888
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.24 E-value=7.8e-05 Score=65.87 Aligned_cols=147 Identities=15% Similarity=0.031 Sum_probs=119.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHH-hhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHH-hc
Q 044999 143 IVIDLLNSCNDGTRRYLLEILSA-LALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLV-EL 220 (461)
Q Consensus 143 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~ 220 (461)
.+++-|.+++...+..++..|.. +..+.+....|+..+|+..|+......+...+..+++++.++..+......++ ..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34555667777888999999998 55899999999999999999999999999999999999999999877765554 56
Q ss_pred CChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhc----------CCHHHHHHHhC---CCChhHHHHHHHHH
Q 044999 221 GVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEA----------GAIPLYAELLQ---GPDSTGKEISEDVF 286 (461)
Q Consensus 221 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~----------g~i~~L~~ll~---~~~~~~~~~a~~~L 286 (461)
.++..+..++.+.+..+...|+..|..++.. +.+...+.+. .....++.+|+ +.+.+++.++...+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 7899999999988899999999999999877 3344333221 13678999997 66889999888776
Q ss_pred HHh
Q 044999 287 CIL 289 (461)
Q Consensus 287 ~~l 289 (461)
-.+
T Consensus 282 N~l 284 (339)
T 3dad_A 282 NKT 284 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.15 E-value=0.00012 Score=64.65 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=130.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhh
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGL-LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAE 260 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 260 (461)
...+++.|.+.+...+..++.-|.. +....+....|++.+++..|+.+....+...+..++.++.++..+.+....++.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 4456677777888888899999988 555566688999999999999999999999999999999999998666655654
Q ss_pred -cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc-cHHHHH---------------HHHHHHhc---cCCHHHHHHHHH
Q 044999 261 -AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA-NANAIA---------------EHLVRILR---EGDNEANAAAAD 320 (461)
Q Consensus 261 -~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~---------------~~l~~ll~---~~~~~~~~~a~~ 320 (461)
..+|..+..++.+.+..+.+.|+..|..++...+ +...+. +.++.+|. +.+.+++.+|+.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 4678999999998889999999999999965554 322222 68889997 678999999998
Q ss_pred HHHHhhCC-CCc--hhHH----hhcCCHHHHHHhhcCC--CHHHHH
Q 044999 321 VLWDLAGY-KHS--VPVI----RNSGAIPILVNLLRGE--NDEVRE 357 (461)
Q Consensus 321 ~L~~l~~~-~~~--~~~l----~~~g~i~~L~~ll~~~--~~~v~~ 357 (461)
.|..+-.. ++. ...+ -+.|.-..+.+.+... ++++++
T Consensus 280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 88877643 321 1122 2334334455556543 445444
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.10 E-value=0.00042 Score=71.24 Aligned_cols=292 Identities=13% Similarity=0.116 Sum_probs=188.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh----HHHHHh
Q 044999 144 VIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA----RRLLVE 219 (461)
Q Consensus 144 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~ 219 (461)
+++-+...+..-+..+...+.++....... .....+.+..+.+.+.+.... +.|+.++..++..... ...++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 444444433444455666666654321000 111125677777777766444 8999999999855432 22333
Q ss_pred cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC-ChhHHHHHHHHHHHhccCcccH-
Q 044999 220 LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP-DSTGKEISEDVFCILAVSEANA- 296 (461)
Q Consensus 220 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~- 296 (461)
+.++.++..+.+....++..|-.++..+... +.... ..++|.|+..+.+. .|..+..|+.++..|+......
T Consensus 95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999888899999888888777655 22222 23489999988755 6999999999999997543211
Q ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhh
Q 044999 297 ----NAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEAD 372 (461)
Q Consensus 297 ----~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 372 (461)
..++|.+.+.+.+..+++...|..++..+|..-.|++. ...+|.|++.+.+++. ...++..|+.-+.-.+.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence 11228888888899999999999999999975444433 3468999999998743 33445555554442221
Q ss_pred HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCcchHHHHHhhCCchHHhHHHHHHHhhhc-hhHHHHHHHHHh
Q 044999 373 RVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPLQHERISEAIGIPSFQSMQSRLTRIRAS-DDLMARSMRRMS 451 (461)
Q Consensus 373 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~ 451 (461)
...... =.+|.|.+-|+.....+++.++.++-|++.-=++..... +.+..++-.+.+..+. .++.+|+.+..+
T Consensus 245 ~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~-----~f~~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 245 TPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIA-----PFLGKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp CHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHH-----HHHTTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred cchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHh-----hhhhhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 111111 137888888888899999999999999986544443333 2333444444443343 467788888888
Q ss_pred Hhhh
Q 044999 452 IEQL 455 (461)
Q Consensus 452 ~~~~ 455 (461)
++.+
T Consensus 319 ~~~l 322 (986)
T 2iw3_A 319 LKTL 322 (986)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 89
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.02 E-value=0.00059 Score=72.08 Aligned_cols=383 Identities=11% Similarity=0.039 Sum_probs=200.0
Q ss_pred cHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA 82 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~ 82 (461)
..+.....+++.+.+ +...+|.+.+.++..++ ..-+ .+.+.++.++..++++..+.-+++.....+...|..++
T Consensus 79 ~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 156 (971)
T 2x1g_F 79 NREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP 156 (971)
T ss_dssp GHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 445555666666654 36889999999999999 4333 45557888888887510011113445555888888777
Q ss_pred hcC---Cc-h----hHHHHHhcCCHHHHH----hcCCC-CC-------HHHHHHHHHHHHHHhc--cChhhHHHHHHcCC
Q 044999 83 SQA---DG-A----LATEIGQSGVINSVL----RLFPQ-SD-------DSFRTVLVKCLRVFVT--FGNENRVIVARNGG 140 (461)
Q Consensus 83 ~~~---~~-~----~~~~~~~~~~l~~L~----~ll~~-~~-------~~~~~~~~~~l~~l~~--~~~~~~~~~~~~g~ 140 (461)
++- .. . .+..+.. .++.++ +.+.. .+ ..++..+..++..... .-+.. .....
T Consensus 157 EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~l 230 (971)
T 2x1g_F 157 EEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTI 230 (971)
T ss_dssp HHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccH
Confidence 510 00 0 1122211 233333 33321 11 1567778888875443 12222 22334
Q ss_pred HHHHHHHhc----------------CCChHHHHHHHHHHHHhhCChH--HHHHHHhcCCHHHHHH-------HHcCCC--
Q 044999 141 LEIVIDLLN----------------SCNDGTRRYLLEILSALALLRE--VRRVLICLGGLRYLVE-------AVSFGS-- 193 (461)
Q Consensus 141 i~~L~~ll~----------------~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~l~~l~~-------~l~~~~-- 193 (461)
++.++. +. ..++.++..|+.++..+...++ .....+. ..++.++. .+..++
T Consensus 231 l~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~ 308 (971)
T 2x1g_F 231 TAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKREND 308 (971)
T ss_dssp HHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCS
T ss_pred HHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhccccc
Confidence 555555 31 1356889999999999884322 1111111 12223322 123334
Q ss_pred -HHHHHHHHHHHHHhhcCchh--H-----------HHHHhcCChHHHHHhccc-----CCHHHHHHHHHHHHHHhcC-c-
Q 044999 194 -MVSRERACQAIGLLAVTGRA--R-----------RLLVELGVIPGLVELFHI-----GDWTTKLVAGNTLGVVAAH-V- 252 (461)
Q Consensus 194 -~~~~~~a~~~L~~l~~~~~~--~-----------~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~-~- 252 (461)
.+.....++.+..+...... . ..+ ...++.++.+... .++++...++..+..++.. .
T Consensus 309 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 386 (971)
T 2x1g_F 309 NEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFA 386 (971)
T ss_dssp CSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHh
Confidence 26666667777766543221 1 111 1245555555533 4677888888888777641 0
Q ss_pred -------cchhhhhh---cCCHHHHHHHhCCCCh---------------hHHHHHHHHHHHhccCcc--cHHHHHHHHHH
Q 044999 253 -------EYITPVAE---AGAIPLYAELLQGPDS---------------TGKEISEDVFCILAVSEA--NANAIAEHLVR 305 (461)
Q Consensus 253 -------~~~~~~~~---~g~i~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ 305 (461)
........ ...++.++..+..++. ..|..+..+|..++.... .-..+.+.+..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~ 466 (971)
T 2x1g_F 387 MSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDE 466 (971)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11111111 1334455555532211 245666667777654332 11222255555
Q ss_pred Hhcc-----CCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHhcC-ChhhHH
Q 044999 306 ILRE-----GDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLL---R--GENDEVREKVSGAIAQLSY-NEADRV 374 (461)
Q Consensus 306 ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll---~--~~~~~v~~~a~~~L~~l~~-~~~~~~ 374 (461)
.+.+ .++..++.++.+++.++....... ...++.++.++ . +.++.++..++++++.++. -..+..
T Consensus 467 ~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~ 542 (971)
T 2x1g_F 467 AIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA 542 (971)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence 5543 578899999999999986522111 12233333332 2 3588999999999999987 111111
Q ss_pred HHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 375 ALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 375 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
.+. ..++.|+..+ + +.++..|+.++.+++.+
T Consensus 543 ~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 543 YIP--PAINLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 111 1355566666 2 77899999999999954
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.97 E-value=0.01 Score=63.11 Aligned_cols=371 Identities=13% Similarity=0.116 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC---c----hh-----H
Q 044999 24 EALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD---G----AL-----A 90 (461)
Q Consensus 24 ~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---~----~~-----~ 90 (461)
..++.+.+.++..++ .+-+ ..+.+.++.+++.++. + +.....+..+|..+++.-. . .. +
T Consensus 114 ~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~~----~---~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk 185 (1049)
T 3m1i_C 114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS----S---VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHTT----C---HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHcc----C---hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 678888888899888 3222 2233477888888753 2 2234446677777764200 0 00 1
Q ss_pred HHHHhc--CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHH-HhcCCChHHHHHHHHHHHHh
Q 044999 91 TEIGQS--GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVID-LLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 91 ~~~~~~--~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l 166 (461)
..+... ..++.+.+.+. ..++.++..+..++.....--+ -..+.+...++.+++ ++. ++.++..|+.+|..+
T Consensus 186 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i 261 (1049)
T 3m1i_C 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEV 261 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHH
Confidence 222221 11222333343 3456778888888876654222 122445666776663 442 788999999999988
Q ss_pred hCC---hH---HHHHHHh--cCCHHHHHH-----------HH---cCCCHHHHHHHHHHHHHhhcC-------ch-hHHH
Q 044999 167 ALL---RE---VRRVLIC--LGGLRYLVE-----------AV---SFGSMVSRERACQAIGLLAVT-------GR-ARRL 216 (461)
Q Consensus 167 ~~~---~~---~~~~~~~--~~~l~~l~~-----------~l---~~~~~~~~~~a~~~L~~l~~~-------~~-~~~~ 216 (461)
... +. ....+.. .+.+..+.. .. .+.+.+.....+..+..+... .+ ....
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1049)
T 3m1i_C 262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1049)
T ss_dssp HHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred HhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Confidence 832 21 1111111 112222211 11 122334444445544433221 11 1222
Q ss_pred HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc----Cccchhhhhh--cCCHHHHHHHhCCCC--------h------
Q 044999 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA----HVEYITPVAE--AGAIPLYAELLQGPD--------S------ 276 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~--~g~i~~L~~ll~~~~--------~------ 276 (461)
+ ..+++.++.....++.++...++..+..++. .+..+..+.. ...++.++..+..++ +
T Consensus 342 l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~ 419 (1049)
T 3m1i_C 342 L--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1049)
T ss_dssp H--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEEC
T ss_pred H--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHh
Confidence 2 2356666666667788888888888877776 3222222211 123444444443210 0
Q ss_pred --------hHHHHHHHHHHHhccCccc-H-HHHHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCch-hHHhhcCCHHH
Q 044999 277 --------TGKEISEDVFCILAVSEAN-A-NAIAEHLVRILRE--GDNEANAAAADVLWDLAGYKHSV-PVIRNSGAIPI 343 (461)
Q Consensus 277 --------~~~~~a~~~L~~l~~~~~~-~-~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~~l~~~g~i~~ 343 (461)
..+..+..+|..++..... . ..+.+.+-+.+.+ .++..++.++.+++.++..-... +.-.-..+++.
T Consensus 420 ~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence 2244455666666532211 1 1111555555643 57899999999999998542211 11111224444
Q ss_pred HHHhhcC-----CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 344 LVNLLRG-----ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 344 L~~ll~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
|..+... +++.++..++++++..+. -..+...+. ..++.++..+.+.++.++..|+.++.+++.+
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5444321 234455568888888876 222222222 2467777788888999999999999999975
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.93 E-value=0.0028 Score=66.96 Aligned_cols=384 Identities=10% Similarity=0.014 Sum_probs=199.8
Q ss_pred cHHHhHHHHHHHhhcC------CHHHHHHHHHHHHhhc-C-----CCc-h----hHHHh----hHHHHHHhhccCCCCCC
Q 044999 7 NWEEAFNRFEQAVVSG------SEALQVKALTKLARVS-K-----FAP-Q----DILAA----TIPILARLLGENNFSGN 65 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~~------~~~~~~~a~~~l~~la-~-----~~~-~----~~l~~----~i~~l~~~l~~~~~~~~ 65 (461)
.|.+.++.++..++++ ++..+..+...|..++ . ... + +.+.. +++.+.+.+....-++.
T Consensus 119 ~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~ 198 (971)
T 2x1g_F 119 EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVW 198 (971)
T ss_dssp C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 8999999999999886 5667777777777666 1 111 1 22332 44444455543100000
Q ss_pred C--cHHHHHHHHHHHHHHHh--cCCchhHHHHHhcCCHHHHHhcC----------------CCCCHHHHHHHHHHHHHHh
Q 044999 66 L--TRSIQQAAAYCLKQIAS--QADGALATEIGQSGVINSVLRLF----------------PQSDDSFRTVLVKCLRVFV 125 (461)
Q Consensus 66 ~--~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~~l~~L~~ll----------------~~~~~~~~~~~~~~l~~l~ 125 (461)
+ +......++.++..... +-+.. .....++.+.. + ...++..+..++.++..+.
T Consensus 199 ~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~ 272 (971)
T 2x1g_F 199 DAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNII 272 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHhhCCcCcc-----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHH
Confidence 0 01456667777776554 21221 22334555555 3 1145677888999998777
Q ss_pred ccCh--hhHHHHHHcCCHHHHHHH-------hcCCCh---HHHHHHHHHHHHhhC-ChHH-H-----------HHHHhcC
Q 044999 126 TFGN--ENRVIVARNGGLEIVIDL-------LNSCND---GTRRYLLEILSALAL-LREV-R-----------RVLICLG 180 (461)
Q Consensus 126 ~~~~--~~~~~~~~~g~i~~L~~l-------l~~~~~---~~~~~a~~~L~~l~~-~~~~-~-----------~~~~~~~ 180 (461)
...+ +....+.. .++.++.+ +...+. +.....++.+..+.. .... . ..+ ..
T Consensus 273 ~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ 348 (971)
T 2x1g_F 273 IQPDCHNYPKTAFV--LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HR 348 (971)
T ss_dssp HCSGGGGCHHHHHH--HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HH
T ss_pred cCccccccHHHHHH--HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HH
Confidence 5322 11112211 22333321 233342 666667777776662 2211 1 111 13
Q ss_pred CHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCc---------hh-HHHHHh--cCChHHHHHhcccCC--------H
Q 044999 181 GLRYLVEAVSF-----GSMVSRERACQAIGLLAVTG---------RA-RRLLVE--LGVIPGLVELFHIGD--------W 235 (461)
Q Consensus 181 ~l~~l~~~l~~-----~~~~~~~~a~~~L~~l~~~~---------~~-~~~~~~--~~~i~~L~~ll~~~~--------~ 235 (461)
.++.++.+..+ .++++...++.....++... +. ...+.. ...++.++..+..++ +
T Consensus 349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~ 428 (971)
T 2x1g_F 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSS 428 (971)
T ss_dssp HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCH
T ss_pred HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCH
Confidence 45666666544 36678888888887775411 11 111111 134455555543221 1
Q ss_pred -------HHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCC-----CChhHHHHHHHHHHHhccCcccHH-HHHHH
Q 044999 236 -------TTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQG-----PDSTGKEISEDVFCILAVSEANAN-AIAEH 302 (461)
Q Consensus 236 -------~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~-~i~~~ 302 (461)
..|..+..+|..++..-. ..+.. -+++.+-..+.. .++..++.++.++..++....... ...+.
T Consensus 429 ~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~ 505 (971)
T 2x1g_F 429 DDLECFRCYRQDISDTFMYCYDVLN--DYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPR 505 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCT--THHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--HHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 345566667777665421 11111 112233333332 578899999999999975433211 11233
Q ss_pred HHHH---hc--cCCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 044999 303 LVRI---LR--EGDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVAL 376 (461)
Q Consensus 303 l~~l---l~--~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 376 (461)
++.+ +. +.++.++..++++++.++.. ....+.+ ..+++.|+..+ + +.++..|+.++.+++. ..+..+
T Consensus 506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l 578 (971)
T 2x1g_F 506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCR--DCQLQL 578 (971)
T ss_dssp HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHH
T ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhc
Confidence 3332 23 34899999999999999843 1111111 12456666666 3 6789999999999996 233333
Q ss_pred Hh--CCChHHHHHhccC--CCHHHHHHHHHHHHHhcCC
Q 044999 377 AD--AGAVPIMIELLHD--ESEELRDNAAESLINFSED 410 (461)
Q Consensus 377 ~~--~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~ 410 (461)
.. ...+..+..++.. -+...+..+..++..++..
T Consensus 579 ~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 579 KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 32 1244555566655 3578888888888888653
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.86 E-value=0.017 Score=60.85 Aligned_cols=387 Identities=15% Similarity=0.123 Sum_probs=202.4
Q ss_pred cHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIA 82 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~ 82 (461)
..+.....++..+.+ ....++.+.+.++..++ .+-+. .+.+.++.++..+++ ..++.+++.....+...|..++
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~-~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQA-EDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhh-hccCCCcHHHHHHHHHHHHhCH
Confidence 344455566666655 46889999999999999 32221 133477888887763 0000113334555778888887
Q ss_pred hcC-Cch----hHHH----HHhc--CCHHHHHhcCCCC--CHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhc
Q 044999 83 SQA-DGA----LATE----IGQS--GVINSVLRLFPQS--DDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLN 149 (461)
Q Consensus 83 ~~~-~~~----~~~~----~~~~--~~l~~L~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 149 (461)
++- +.. .+.. +... ..++.+.+.+... +..+...+..++......+... ......++.+++.+.
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~ 251 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ 251 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC
Confidence 520 010 0000 1110 1122333444332 2236667777776544322110 011233566666664
Q ss_pred CCChHHHHHHHHHHHHhhCCh--HH-HHH---HHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh--------
Q 044999 150 SCNDGTRRYLLEILSALALLR--EV-RRV---LIC--LGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-------- 213 (461)
Q Consensus 150 ~~~~~~~~~a~~~L~~l~~~~--~~-~~~---~~~--~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-------- 213 (461)
++.++..|+.++..+.... .. ... ++. .+..+.+...+..++.+.....++.+..+......
T Consensus 252 --~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 329 (963)
T 2x19_B 252 --DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH 329 (963)
T ss_dssp --STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence 5678999999999988432 11 111 111 11223333333445556556666666666543221
Q ss_pred HHHHHhcCChHHHHHhccc-----CCHHHHHHHHHHHHHHhcC-cc-------chhhhhhc---CCHHHHHHHhCCCCh-
Q 044999 214 RRLLVELGVIPGLVELFHI-----GDWTTKLVAGNTLGVVAAH-VE-------YITPVAEA---GAIPLYAELLQGPDS- 276 (461)
Q Consensus 214 ~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~-~~-------~~~~~~~~---g~i~~L~~ll~~~~~- 276 (461)
...+ ...++.++.+... .++++...++..+..++.. .. ........ .+++.++..+..++.
T Consensus 330 ~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~ 407 (963)
T 2x19_B 330 WQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE 407 (963)
T ss_dssp HHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred hHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 0111 1345555555543 2444555556555555542 10 00111110 234444444433211
Q ss_pred --------------hHHHHHHHHHHHhccCcc--cHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCchhHHh
Q 044999 277 --------------TGKEISEDVFCILAVSEA--NANAIAEHLVRIL----REGDNEANAAAADVLWDLAGYKHSVPVIR 336 (461)
Q Consensus 277 --------------~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~l~ 336 (461)
+.|..+..+|..++.... .-..+.+.+...+ .+.++..++.++.+++.++......
T Consensus 408 ~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~---- 483 (963)
T 2x19_B 408 EYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN---- 483 (963)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS----
T ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch----
Confidence 123445555555543222 1122225555556 5568899999999999999652211
Q ss_pred hcCCHHHHHHhh---cCCCHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 337 NSGAIPILVNLL---RGENDEVREKVSGAIAQLSYN-EADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 337 ~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
....++.++..+ .++++.++..++++++.++.. ..+. .+.. ..++.|+..+++ +.++..|+.++.+++.+
T Consensus 484 ~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 484 YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 112334444443 335788999999999999872 2222 2333 578888888854 88999999999999854
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.81 E-value=0.019 Score=60.48 Aligned_cols=383 Identities=12% Similarity=0.084 Sum_probs=203.8
Q ss_pred cHHHhHHHHHHHhhc-----CCHHHHHHHHHHHHhhc-C---CCc--------h----hHHHhhHHHHHHhhccCCCCCC
Q 044999 7 NWEEAFNRFEQAVVS-----GSEALQVKALTKLARVS-K---FAP--------Q----DILAATIPILARLLGENNFSGN 65 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~la-~---~~~--------~----~~l~~~i~~l~~~l~~~~~~~~ 65 (461)
+|.+.++.++..+++ .++.....+...|..++ . ... + ..+..+++.+...+.. .+
T Consensus 138 ~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~----~~ 213 (963)
T 2x19_B 138 AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQ----PS 213 (963)
T ss_dssp TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSC----TT
T ss_pred ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 599999999999876 35566777777777766 1 110 1 1111255666666765 33
Q ss_pred CcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccCh--hhHHHHH---H--c
Q 044999 66 LTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGN--ENRVIVA---R--N 138 (461)
Q Consensus 66 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~---~--~ 138 (461)
++......+..++...... .... ......++.+.+.+. ++..+..++.++..+..... .....+. . .
T Consensus 214 ~~~~~~~~~l~~l~~wi~~-~~~~---~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~ 287 (963)
T 2x19_B 214 SPSCVRQKVLKCFSSWVQL-EVPL---QDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVL 287 (963)
T ss_dssp CCHHHHHHHHHHHHHHHTS-SCCG---GGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHcC-CCCc---ccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHH
Confidence 3223555566666544432 1110 011334666777774 45567888888887775321 1111111 0 1
Q ss_pred CCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh--------cCCHHHHHHHHcC-----CCHHHHHHHHHHHH
Q 044999 139 GGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC--------LGGLRYLVEAVSF-----GSMVSRERACQAIG 205 (461)
Q Consensus 139 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~~~l~~l~~~l~~-----~~~~~~~~a~~~L~ 205 (461)
+..+.+.+.+...+.+.....++.+..+..... ..+.. ...++.++.+..+ .++++...++....
T Consensus 288 ~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~ 365 (963)
T 2x19_B 288 GLQEQLRQAVQNGDMETSHGICRIAVALGENHS--RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365 (963)
T ss_dssp TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHH
T ss_pred hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH--HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHH
Confidence 112222233344455555556666666552211 11110 1345566666654 24456666666666
Q ss_pred HhhcCc--------hh-HHHHHh--cCChHHHHHhcccCCH---------------HHHHHHHHHHHHHhcCccchhhhh
Q 044999 206 LLAVTG--------RA-RRLLVE--LGVIPGLVELFHIGDW---------------TTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 206 ~l~~~~--------~~-~~~~~~--~~~i~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
.++... +. ...+.. ...++.++..+..++. +.+..+..+|..++.... ..+.
T Consensus 366 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~--~~~l 443 (963)
T 2x19_B 366 TLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG--AELL 443 (963)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT--HHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc--HHHH
Confidence 665411 11 111111 1234444444432221 123444555555553211 0110
Q ss_pred hcCCHHHHHHHh----CCCChhHHHHHHHHHHHhccCccc-HHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhhCC-CC
Q 044999 260 EAGAIPLYAELL----QGPDSTGKEISEDVFCILAVSEAN-ANAIAEHLVRIL---REGDNEANAAAADVLWDLAGY-KH 330 (461)
Q Consensus 260 ~~g~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~l~~ll---~~~~~~~~~~a~~~L~~l~~~-~~ 330 (461)
.-+++.+...+ .+.++..++.++.++..++..... .....+.++..+ .++++.++..++++++.++.. ..
T Consensus 444 -~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~ 522 (963)
T 2x19_B 444 -SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD 522 (963)
T ss_dssp -HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 11123333444 456788999999999999754321 111223344333 345788999999999999853 12
Q ss_pred chhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHhccC--CCHHHHHHHHHHHHH
Q 044999 331 SVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD--AGAVPIMIELLHD--ESEELRDNAAESLIN 406 (461)
Q Consensus 331 ~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~ll~~--~~~~~~~~a~~~L~~ 406 (461)
.. .. -..+++.++..+.+ +.++..|+.++.+++. .++..+.. ...+..|..++.. -+...+..+..++..
T Consensus 523 ~~-~~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~ 596 (963)
T 2x19_B 523 HP-VM-INSVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF 596 (963)
T ss_dssp CH-HH-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CH-HH-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 22 22 23688888888865 7899999999999996 22222221 1123334445543 367888888999998
Q ss_pred hcCC
Q 044999 407 FSED 410 (461)
Q Consensus 407 l~~~ 410 (461)
++..
T Consensus 597 i~~~ 600 (963)
T 2x19_B 597 LLSA 600 (963)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 8754
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.77 E-value=5.4e-05 Score=70.88 Aligned_cols=253 Identities=15% Similarity=0.167 Sum_probs=157.7
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHh
Q 044999 99 INSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLIC 178 (461)
Q Consensus 99 l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 178 (461)
.+.|+.-|-++.+++|..|+.+++.+........ |-. ...+. ..|++.++-++.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA------GR~-------~~~N~---DLAvRLLCVLALD--------- 230 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG------DIQ-------IRVDS---KLFSKIYEILVTD--------- 230 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----------CC-------CCCCT---THHHHHHHHHHHB---------
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC------cee-------ccccH---HHHHHHHHHHHhc---------
Confidence 4566666778888889999988887665332110 100 11111 3444444433310
Q ss_pred cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhh
Q 044999 179 LGGLRYLVEAVSFG-SMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITP 257 (461)
Q Consensus 179 ~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 257 (461)
.+-++..+. -..||+.++.+|+.+ .+-+.. ..++..++..+..+.++++..++-.|.++...-. .
T Consensus 231 -----RFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~---~ 296 (800)
T 3oc3_A 231 -----KFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE---D 296 (800)
T ss_dssp -----CCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC---C
T ss_pred -----cccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH---H
Confidence 111111222 237888888888887 443332 2345555555577788999988888888821111 1
Q ss_pred hhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCchhHH
Q 044999 258 VAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGD--NEANAAAADVLWDLAGYKHSVPVI 335 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~l 335 (461)
-.++++.++..|.+.+.+|+..|+.+|..++ .++....+...+.+.|.+.+ .......+..|..|+..+.. .-
T Consensus 297 --Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~ 371 (800)
T 3oc3_A 297 --KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LS 371 (800)
T ss_dssp --HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CC
T ss_pred --HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cc
Confidence 2455778888888889999999999999988 55556666677777775432 22233556677777755432 11
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hccCCCHHHHHHHHHHHH
Q 044999 336 RNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIE-LLHDESEELRDNAAESLI 405 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~ 405 (461)
.....+|.|..++...-..||..++.+|..+.. . ..+..+.+ ++-.++++++..+..+-.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~-~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE-E---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC-H---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh-h---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 234789999999999999999999999988771 1 12333333 345688888888777664
No 95
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.73 E-value=0.021 Score=60.74 Aligned_cols=386 Identities=10% Similarity=0.056 Sum_probs=204.2
Q ss_pred CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CC---C--c--h-----hHHHh----hHHHHHHhhccCCCCCCC
Q 044999 6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS---KF---A--P--Q-----DILAA----TIPILARLLGENNFSGNL 66 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~---~--~--~-----~~l~~----~i~~l~~~l~~~~~~~~~ 66 (461)
..|.+.++.++..++ .++..+..+..+|..++ .. . . + ..+.. +++.+.+.+.. . .
T Consensus 134 ~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~----~-~ 207 (1049)
T 3m1i_C 134 QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ----G-S 207 (1049)
T ss_dssp TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-C
T ss_pred ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-C
Confidence 479999999999997 55666666777777766 11 0 0 0 22333 55666677765 3 3
Q ss_pred cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--hh---hHHHHHH--cC
Q 044999 67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG--NE---NRVIVAR--NG 139 (461)
Q Consensus 67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~--~~---~~~~~~~--~g 139 (461)
++.++..++.++.+.... -+ ...+.+...++.+.+.+. .++.++..++.++..+.... +. ....+.. .+
T Consensus 208 ~~~~~~~aL~~l~~~l~w-i~--~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHW-IP--YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTT-SC--THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh-CC--HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 456777788888877653 22 123445566776663222 37888889999998777542 11 1111111 11
Q ss_pred CHHHHHH-H----------h---cCCChHHHHHHHHHHHHhhC--------ChHHHHHHHhcCCHHHHHHHHcCCCHHHH
Q 044999 140 GLEIVID-L----------L---NSCNDGTRRYLLEILSALAL--------LREVRRVLICLGGLRYLVEAVSFGSMVSR 197 (461)
Q Consensus 140 ~i~~L~~-l----------l---~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 197 (461)
.+..+.. + . ...+.+.....+..+..+.. .++....+ ..+++.++.....++.++.
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~ 361 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELF 361 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHH
Confidence 2222211 1 1 11223333444444433321 11112211 1356667777777788899
Q ss_pred HHHHHHHHHhhc----CchhHHHHHh--cCChHHHHHhcccC-------------------CH---HHHHHHHHHHHHHh
Q 044999 198 ERACQAIGLLAV----TGRARRLLVE--LGVIPGLVELFHIG-------------------DW---TTKLVAGNTLGVVA 249 (461)
Q Consensus 198 ~~a~~~L~~l~~----~~~~~~~~~~--~~~i~~L~~ll~~~-------------------~~---~~~~~a~~~L~~l~ 249 (461)
..++.....++. .+..+..+.. ...++.++..+..+ +. ..+..+..+|..++
T Consensus 362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~ 441 (1049)
T 3m1i_C 362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT 441 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence 999888888766 2221111111 12344445444311 11 22334556666666
Q ss_pred cCccchhhhhhcCCHHHHHHHhC--CCChhHHHHHHHHHHHhccCccc--HHHHH----HHHHHHhcc-----CCHHHHH
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQ--GPDSTGKEISEDVFCILAVSEAN--ANAIA----EHLVRILRE-----GDNEANA 316 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~--~~~i~----~~l~~ll~~-----~~~~~~~ 316 (461)
.... ..+ -.-+.+.+-..+. ..++..++.++.+++.++..-.. ...+. +.+..+... +++.++.
T Consensus 442 ~~~~--~~~-l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~ 518 (1049)
T 3m1i_C 442 HLNV--IDT-EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVAS 518 (1049)
T ss_dssp HHCH--HHH-HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHH
T ss_pred ccCH--HHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHH
Confidence 3211 111 0111333444444 34788999999999998653222 12222 444443221 2344555
Q ss_pred HHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHH----
Q 044999 317 AAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD------AGAVPIMI---- 386 (461)
Q Consensus 317 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~---- 386 (461)
.++++++.++..-....... ..+++.++..+.++++.|+..|+.++.+++.. ++..+.. ...++.++
T Consensus 519 ~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~ 595 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQ 595 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHH
Confidence 67888887764211111222 13567778888888899999999999999972 3333330 02233333
Q ss_pred HhccCCCHHHHHHHHHHHHHhcC
Q 044999 387 ELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 387 ~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
.++..-+.+-......++..+..
T Consensus 596 ~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 596 KTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444445455566666666643
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.71 E-value=0.05 Score=57.18 Aligned_cols=371 Identities=14% Similarity=0.134 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC-C---c--------hhH
Q 044999 24 EALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA-D---G--------ALA 90 (461)
Q Consensus 24 ~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~---~--------~~~ 90 (461)
..++.+.+.++..++ ..-+ ..+...++.+++.++. +. ......+..|..|.++- + . ..+
T Consensus 114 ~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~----~~---~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk 185 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS----SV---NVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT----CH---HHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC----CH---HHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 455666777788777 2211 1123377888888864 22 23333667777666520 0 0 011
Q ss_pred HHHHhc--CCHHHHHhcCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHH-HHhcCCChHHHHHHHHHHHHh
Q 044999 91 TEIGQS--GVINSVLRLFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVI-DLLNSCNDGTRRYLLEILSAL 166 (461)
Q Consensus 91 ~~~~~~--~~l~~L~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l 166 (461)
+.+... ..++.+.+.+. ..++.+...+..++.....-- .-..+.+.+.++.++ .++. ++..+..|+.+|..+
T Consensus 186 ~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI--~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eI 261 (1023)
T 4hat_C 186 NSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWI--PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEV 261 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC--CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 122221 12233333443 345666777888888666421 124556678888888 7875 567999999999998
Q ss_pred hC-C---h--HHHHHHHhc--CCHHHH-----------HHHH---cCCCHHHHHHHHHHHHHhhcCchh--------HHH
Q 044999 167 AL-L---R--EVRRVLICL--GGLRYL-----------VEAV---SFGSMVSRERACQAIGLLAVTGRA--------RRL 216 (461)
Q Consensus 167 ~~-~---~--~~~~~~~~~--~~l~~l-----------~~~l---~~~~~~~~~~a~~~L~~l~~~~~~--------~~~ 216 (461)
.. . + .....+... +.+..+ -..+ ...+.+....-++.+..+....-. +..
T Consensus 262 v~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 262 SNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp HTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred HccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 84 2 2 111111110 111111 1111 122445555555555544332211 111
Q ss_pred HHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--cc-chhhhhhc---CCHHHHHHHhCCCC-----------h---
Q 044999 217 LVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VE-YITPVAEA---GAIPLYAELLQGPD-----------S--- 276 (461)
Q Consensus 217 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~-~~~~~~~~---g~i~~L~~ll~~~~-----------~--- 276 (461)
+ ..++..|+.+-..++.++-..++.....++.. .+ .+...... ..++.++.-+..++ +
T Consensus 342 l--~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e 419 (1023)
T 4hat_C 342 L--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE 419 (1023)
T ss_dssp H--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred H--HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence 1 01233455555566777877777777677653 11 12211111 23344444443322 0
Q ss_pred -----h--HHH-HHHHHHHHhcc--CcccHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCc-hhHHhhcCCHHH
Q 044999 277 -----T--GKE-ISEDVFCILAV--SEANANAIAEHLVRILRE--GDNEANAAAADVLWDLAGYKHS-VPVIRNSGAIPI 343 (461)
Q Consensus 277 -----~--~~~-~a~~~L~~l~~--~~~~~~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~ 343 (461)
+ ... ..-.+|..++. .++....+.+.+.+.+.+ .++..++.++.+++.++..... ...-.-..+++.
T Consensus 420 ~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~ 499 (1023)
T 4hat_C 420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1023)
T ss_dssp SSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 0 011 11133333321 112222222555555543 5799999999999999976432 232333357788
Q ss_pred HHHhhcC-----CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 344 LVNLLRG-----ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 344 L~~ll~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
|+.++.. .+..++..++++++..+. -..+...+. ..+..|.+.+.++++.++..|++++.+|+..
T Consensus 500 Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 500 LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 8888763 334466677788888777 222222221 1355566666678899999999999999975
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.71 E-value=1.2e-05 Score=69.19 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=131.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCC
Q 044999 102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGG 181 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 181 (461)
+..++.++++.++..++..+ ....+..+++++++.+|..++..+ .
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------
T ss_pred HHHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------
Confidence 44667888999888888642 123467788889999999888642 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA 261 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 261 (461)
.+.+..++.++++.+|..++..+ ..+.+..+++++++.++..++.. +.
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l-----------------~~~~L~~L~~D~d~~VR~~aA~~---l~------------ 147 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL-----------------PLEQLEQMAADRDYLVRAYVVQR---IP------------ 147 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS-----------------CTGGGGGGTTCSSHHHHHHHHHH---SC------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHh---cC------------
Confidence 13466778888999999888742 12345667788899999887762 11
Q ss_pred CCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCH
Q 044999 262 GAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAI 341 (461)
Q Consensus 262 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i 341 (461)
.+.+..+++++++.||..++.. +.. +.+..++.+.++.|+..++..+ ..
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~---l~~---------~ll~~ll~D~d~~VR~aaa~~l-----------------~~ 196 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKR---LPE---------ESLGLMTQDPEPEVRRIVASRL-----------------RG 196 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHH---SCG---------GGGGGSTTCSSHHHHHHHHHHC-----------------CG
T ss_pred --HHHHHHHHcCCCHHHHHHHHHc---CCH---------HHHHHHHcCCCHHHHHHHHHhC-----------------CH
Confidence 2344566778899999888775 111 3445667888999999888652 23
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999 342 PILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 342 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
+.|..++.+++..|+..++..+. .+.|..+ ++++..|+..+...|
T Consensus 197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 56778889999999998887642 3566666 888999998886543
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.65 E-value=0.0028 Score=66.39 Aligned_cols=390 Identities=10% Similarity=0.053 Sum_probs=207.9
Q ss_pred cHHHhHHHHHHHhhc-----CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 7 NWEEAFNRFEQAVVS-----GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 7 ~~~~~~~~l~~ll~~-----~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
+.......++.++.. +...++.+.+.++..++ ..-+ ..+...++.++.+++. ++.+ .........|..
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~----~~~~-~~~~~~LriL~~ 155 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAA----SSQS-EFSNFYLKVLLS 155 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH----HCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcC----CChh-HHHHHHHHHHHH
Confidence 445555666666653 34678888888888888 2111 1122367777777765 3221 122224445554
Q ss_pred HHhc-CCc-------------hhHHHHHhc-------CCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcC
Q 044999 81 IASQ-ADG-------------ALATEIGQS-------GVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNG 139 (461)
Q Consensus 81 l~~~-~~~-------------~~~~~~~~~-------~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g 139 (461)
+.++ .+. ..++.+.+. .....|.+...+.++.+...+..++.....-- .-..+...+
T Consensus 156 i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi--~~~~i~~~~ 233 (980)
T 3ibv_A 156 IGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI--NINLIVNEP 233 (980)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CHHHHHCHH
T ss_pred hHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc--CHHhhhcch
Confidence 4432 000 012333322 12222223323467778888888888777522 134555567
Q ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHhh---CChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhh------
Q 044999 140 GLEIVIDLLNSCNDGTRRYLLEILSALA---LLREVRRVLICLGGLRYLVEAVS--FGSMVSRERACQAIGLLA------ 208 (461)
Q Consensus 140 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~a~~~L~~l~------ 208 (461)
.++.++.++.. +.++..|+.+|..+. ..++.+..++..=.+...+..+. .+|.+.....++.+..++
T Consensus 234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~ 311 (980)
T 3ibv_A 234 CMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI 311 (980)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888865 789999999999987 23444444444311111122222 356666554444443221
Q ss_pred cCch-----h-HHHH-Hh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC----cc---chhhhhh--cCCHHHHHHHh
Q 044999 209 VTGR-----A-RRLL-VE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH----VE---YITPVAE--AGAIPLYAELL 271 (461)
Q Consensus 209 ~~~~-----~-~~~~-~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~---~~~~~~~--~g~i~~L~~ll 271 (461)
...+ . +... .. .+.++.++..+.+++.++-..++..+..+... +. ....... ...++.++.-+
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~ 391 (980)
T 3ibv_A 312 KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKM 391 (980)
T ss_dssp HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHc
Confidence 1111 0 1111 11 35788888999888888887777776655432 10 1111100 01233333333
Q ss_pred CCC-----Ch-----------hHHHHHHHHHHHhcc-CcccHHH----HH-HHHHHHhc---cCCHHHHHHHHHHHHHhh
Q 044999 272 QGP-----DS-----------TGKEISEDVFCILAV-SEANANA----IA-EHLVRILR---EGDNEANAAAADVLWDLA 326 (461)
Q Consensus 272 ~~~-----~~-----------~~~~~a~~~L~~l~~-~~~~~~~----i~-~~l~~ll~---~~~~~~~~~a~~~L~~l~ 326 (461)
+.+ +. +.|+.....+..++. .++.... .. +.+.+.+. +.++..++.++.+|+.++
T Consensus 392 ~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~ia 471 (980)
T 3ibv_A 392 KYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFG 471 (980)
T ss_dssp SCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 322 11 244444422323322 2222222 11 33334442 336889999999999998
Q ss_pred CC-CCchhHH-----hhcCCHHHHHHhhc-----CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhc-----
Q 044999 327 GY-KHSVPVI-----RNSGAIPILVNLLR-----GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELL----- 389 (461)
Q Consensus 327 ~~-~~~~~~l-----~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll----- 389 (461)
.. ....... .....++.+..++. ..++.++..++++++..+. -..+ ...++.++..+
T Consensus 472 E~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~ll~~~g 545 (980)
T 3ibv_A 472 EGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEYFVGPRG 545 (980)
T ss_dssp TTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHHHTSTTT
T ss_pred hhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHHHhcccc
Confidence 64 2211111 01123455556654 6789999999999999988 2221 23455555544
Q ss_pred -cCCCHHHHHHHHHHHHHhcCCCc
Q 044999 390 -HDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 390 -~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
.++++.++..|+.++.+++.+..
T Consensus 546 l~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 546 IHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp TTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred ccCCChhHHHHHHHHHHHHHHHhh
Confidence 34678899999999999986643
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.55 E-value=0.015 Score=51.33 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=151.8
Q ss_pred HHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhH---HHHHHcCCHHHHHHHhcC-CChHHHHHHHHHHHHhh
Q 044999 92 EIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENR---VIVARNGGLEIVIDLLNS-CNDGTRRYLLEILSALA 167 (461)
Q Consensus 92 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~ 167 (461)
.+...+.+..|+..|..-+.+.++.++..+.++.......+ ...... -.+.+.-++.. .++++...+-..|..+.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 56677889999999999999989999988887776443321 111222 12223333322 24567777888888888
Q ss_pred CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhc---CChHHHHHhcccCCHHHHHHHHH
Q 044999 168 LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVEL---GVIPGLVELFHIGDWTTKLVAGN 243 (461)
Q Consensus 168 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~ 243 (461)
.++.....+...+.+..+++..+.++-++-..|..++..+-..++. ...+... .++...-.++.+++--+++.++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 9999999999988889999999999999999999999987666554 4444442 35667778899999999999999
Q ss_pred HHHHHhcCccchhhhhh----cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCccc
Q 044999 244 TLGVVAAHVEYITPVAE----AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEAN 295 (461)
Q Consensus 244 ~L~~l~~~~~~~~~~~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 295 (461)
.|+.+-.+..+...+.+ ..-+..++.+|++.+..++..|--++.-+..+|.-
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 99999888666554443 24467788889999999999888888877666544
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.49 E-value=0.0056 Score=64.14 Aligned_cols=350 Identities=12% Similarity=0.099 Sum_probs=187.9
Q ss_pred CcHHHhHHHHHHHhhcCCH-HHHHHHHHHHHhhc----CCC--------c-----hhHHHh-----hHHHHHHhhccCCC
Q 044999 6 TNWEEAFNRFEQAVVSGSE-ALQVKALTKLARVS----KFA--------P-----QDILAA-----TIPILARLLGENNF 62 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~-~~~~~a~~~l~~la----~~~--------~-----~~~l~~-----~i~~l~~~l~~~~~ 62 (461)
..|...++.++.++++++. .......+.|..+. +.. . ++.++. +++....+|.. +
T Consensus 124 ~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~--~ 201 (980)
T 3ibv_A 124 SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLA--Y 201 (980)
T ss_dssp TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH--H
T ss_pred ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHH--H
Confidence 4799999999999987654 44555566666444 111 1 122222 24555555542 0
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccC--hhhHHHHHHcCC
Q 044999 63 SGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFG--NENRVIVARNGG 140 (461)
Q Consensus 63 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~g~ 140 (461)
....++.....+..++...... -....+...+.++.+.+++.+ +.++..|+.|+..+.... ++.+..+...=.
T Consensus 202 ~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 202 SNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 0113455666687888877763 223455567788889998865 788999999999777633 233333332201
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHHHhh-------CCh-----HHHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHH
Q 044999 141 LEIVIDLLN--SCNDGTRRYLLEILSALA-------LLR-----EVRRVLIC--LGGLRYLVEAVSFGSMVSRERACQAI 204 (461)
Q Consensus 141 i~~L~~ll~--~~~~~~~~~a~~~L~~l~-------~~~-----~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~a~~~L 204 (461)
+...+..+. ..|.+..+.-++.+..++ ..+ +.+..... .+.++.++.++.+++.++-..++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 111111111 355565554444443332 111 11111111 25789999999999888888777776
Q ss_pred HHhhcCchh-------HHHHHh--cCChHHHHHhcccC------C----------HHHHHHHHHHHHHHhcC--ccchhh
Q 044999 205 GLLAVTGRA-------RRLLVE--LGVIPGLVELFHIG------D----------WTTKLVAGNTLGVVAAH--VEYITP 257 (461)
Q Consensus 205 ~~l~~~~~~-------~~~~~~--~~~i~~L~~ll~~~------~----------~~~~~~a~~~L~~l~~~--~~~~~~ 257 (461)
..+....+. ...... ...++.++.-++.+ + .+.|.... .+...... ++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 655432110 111111 11344444444411 1 02333333 22222211 111110
Q ss_pred hhhcCCHHHHHHHhC---CCChhHHHHHHHHHHHhccCcc-----------cHHHHHHHHHHHhc-----cCCHHHHHHH
Q 044999 258 VAEAGAIPLYAELLQ---GPDSTGKEISEDVFCILAVSEA-----------NANAIAEHLVRILR-----EGDNEANAAA 318 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~-----------~~~~i~~~l~~ll~-----~~~~~~~~~a 318 (461)
..-.-+.+.+.+.+. +.++...+.++.+|..++..-. ....+.+.+..++. ..+|.++..+
T Consensus 436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~ 515 (980)
T 3ibv_A 436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 000011122223332 2368889999999999865422 12234466667765 5689999999
Q ss_pred HHHHHHhhCCCCchhHHhhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhcC
Q 044999 319 ADVLWDLAGYKHSVPVIRNSGAIPILVNLLR------GENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 319 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~ 368 (461)
+.+++..+..-.. ....++.++..+- ++++.++..|+.++.++++
T Consensus 516 ~~~l~rys~~~~~-----~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 516 MEILVRYASFFDY-----ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHTGGGGGT-----CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 9999998854211 2244555555543 4667899999999999997
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.007 Score=53.47 Aligned_cols=183 Identities=15% Similarity=0.080 Sum_probs=127.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCchh---HHH-HHh-cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--c-c-ch
Q 044999 185 LVEAVSFGSMVSRERACQAIGLLAVTGRA---RRL-LVE-LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--V-E-YI 255 (461)
Q Consensus 185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~-~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~-~-~~ 255 (461)
+-+-|.+.++..|..|+..+..+...... ... +.. ....+.+-..+.+.+..++..++.++..++.. . . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55778899999999999999887654432 111 111 23455666788899999999999999988764 1 1 11
Q ss_pred hhh--hhcCCHHHHHHH-hCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC--CC
Q 044999 256 TPV--AEAGAIPLYAEL-LQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY--KH 330 (461)
Q Consensus 256 ~~~--~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~--~~ 330 (461)
... .-..+++.|++= +.+..+.++..+..++..+.........+.+.+...+.+.+|.++..++..|..+... ..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 111 123456777754 6777888999998888877655444445557788888999999999999999887632 21
Q ss_pred c--hhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 331 S--VPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 331 ~--~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
. ..... ..+++.+..++.+.++.||..|..++..+..
T Consensus 174 ~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 174 NVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp TCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred cCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1 11111 1345668888999999999999999988876
No 102
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.38 E-value=0.0064 Score=51.26 Aligned_cols=211 Identities=13% Similarity=0.157 Sum_probs=146.7
Q ss_pred ChHHHHHHHHHHHHhh-CChHHHHHHHhc-CCHHHHHHHHc-------CC--CH---HHHHHHHHHHHHhhcCchhHHHH
Q 044999 152 NDGTRRYLLEILSALA-LLREVRRVLICL-GGLRYLVEAVS-------FG--SM---VSRERACQAIGLLAVTGRARRLL 217 (461)
Q Consensus 152 ~~~~~~~a~~~L~~l~-~~~~~~~~~~~~-~~l~~l~~~l~-------~~--~~---~~~~~a~~~L~~l~~~~~~~~~~ 217 (461)
+++.|+.|+.-|..-- ..++....+... |.+..|++=+- .+ +. .-...|+..+..++.+++.+..|
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 4556888887777654 334445555553 55555543221 11 11 23457777788899999999999
Q ss_pred HhcCChHHHHHhcccCC-----HHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc
Q 044999 218 VELGVIPGLVELFHIGD-----WTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA 290 (461)
Q Consensus 218 ~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 290 (461)
.+.+..-.|...+...+ +..+-.++++++.+... ++.-..+.+.+++|..+..+..++.--+..|..++..+-
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 99988888888887332 46788899999999866 555667778899999999999999988989999888886
Q ss_pred cCcccHHHHH--------------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc-------CCHHHHHHhhc
Q 044999 291 VSEANANAIA--------------EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS-------GAIPILVNLLR 349 (461)
Q Consensus 291 ~~~~~~~~i~--------------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-------g~i~~L~~ll~ 349 (461)
.++.+-..+. ..+..+...+++.+....+++-..|+.++..++.+.+. |... .+++
T Consensus 174 ~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~---~~l~ 250 (268)
T 2fv2_A 174 LDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFA---QVLK 250 (268)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTH---HHHT
T ss_pred ccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHH---HHHh
Confidence 6665533322 34444556778999999999999999998887776632 2222 2222
Q ss_pred CCCHHHHHHHHHHHHHh
Q 044999 350 GENDEVREKVSGAIAQL 366 (461)
Q Consensus 350 ~~~~~v~~~a~~~L~~l 366 (461)
+++.++..-...+.|+
T Consensus 251 -~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 251 -DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp -SCHHHHHHHHHHHHHS
T ss_pred -cCHHHHHHHHHHHHhc
Confidence 4566777666666665
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.21 E-value=0.25 Score=51.99 Aligned_cols=371 Identities=11% Similarity=0.052 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhc-CCc-----------hh
Q 044999 23 SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQ-ADG-----------AL 89 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-----------~~ 89 (461)
++.++.+.+.++..++ ..-+ ..+...++.+++.++. + +......+..|..+.+. .+. ..
T Consensus 125 ~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~----~---~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~l 196 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT----S---ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHL 196 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH----C---HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC----C---HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 4666777777787777 2111 1122366777777764 2 22333367777777763 010 11
Q ss_pred HHHHHhcCCHHHHHh----cCC-CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHH-HHHhcCCChHHHHHHHHHH
Q 044999 90 ATEIGQSGVINSVLR----LFP-QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIV-IDLLNSCNDGTRRYLLEIL 163 (461)
Q Consensus 90 ~~~~~~~~~l~~L~~----ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L 163 (461)
++.+.+. .+.+++ .+. ..++.+...+..++..+..=-+ -..+.+.+.++.+ ..++ .++..+..|+.+|
T Consensus 197 k~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL 270 (1073)
T 3gjx_A 197 KDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCL 270 (1073)
T ss_dssp HHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHH
Confidence 2233322 233333 332 4566666666777776554211 2356677778877 4665 4678999999999
Q ss_pred HHhh-CC-hHHHHHHHh--cCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHhhcCchhHHHHHh-cC----
Q 044999 164 SALA-LL-REVRRVLIC--LGGLRYLVEAVS-------------FGSMVSRERACQAIGLLAVTGRARRLLVE-LG---- 221 (461)
Q Consensus 164 ~~l~-~~-~~~~~~~~~--~~~l~~l~~~l~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~---- 221 (461)
..+. .+ ++....+.. ...+..+-.++. +.+.+....-++++..+....- ..+.. .+
T Consensus 271 ~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~--~lIe~~p~~~~~ 348 (1073)
T 3gjx_A 271 TEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG--QLLEKRLNLREA 348 (1073)
T ss_dssp HHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH--HHHHHCGGGHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH--HHHhcCccchHH
Confidence 9987 32 222222211 112222222221 1122333344444444332221 11111 01
Q ss_pred ---ChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccc--------------------hhhhhhcCCHHHHHH----HhC
Q 044999 222 ---VIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEY--------------------ITPVAEAGAIPLYAE----LLQ 272 (461)
Q Consensus 222 ---~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~--------------------~~~~~~~g~i~~L~~----ll~ 272 (461)
++..++.+-..++.++.+.+......+... .+. +..+. ..++..|.. -+.
T Consensus 349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~~L~~vlI~~m~ 427 (1073)
T 3gjx_A 349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLSKVRLLMVSRMA 427 (1073)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHHHHHHHHHHhcC
Confidence 344455555677888888877776666543 110 11010 011222222 222
Q ss_pred CCCh-------------h---------HHHHHHHHHHHhcc-C-cccHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHhh
Q 044999 273 GPDS-------------T---------GKEISEDVFCILAV-S-EANANAIAEHLVRILRE--GDNEANAAAADVLWDLA 326 (461)
Q Consensus 273 ~~~~-------------~---------~~~~a~~~L~~l~~-~-~~~~~~i~~~l~~ll~~--~~~~~~~~a~~~L~~l~ 326 (461)
.++. + .....-.+|..++. . .+....+.+.+.+.+.+ .++...+.++++++.++
T Consensus 428 ~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa 507 (1073)
T 3gjx_A 428 KPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS 507 (1073)
T ss_dssp CSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred CCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence 2210 0 11112223333321 1 22222233666555544 36999999999999998
Q ss_pred CCCC-chhHHhhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHH
Q 044999 327 GYKH-SVPVIRNSGAIPILVNLLRGEN-----DEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNA 400 (461)
Q Consensus 327 ~~~~-~~~~l~~~g~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 400 (461)
..-. ..+.-.-..+++.|+.+...+. +.++...+++++..++.-.....+.+ ..+..|++.+.+.++.++..|
T Consensus 508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~L~~~m~~~~~~vq~aA 586 (1073)
T 3gjx_A 508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNKLFEFMHETHDGVQDMA 586 (1073)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTCCSTTHHHHH
T ss_pred CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHHHHHHHhcCCHHHHHHH
Confidence 5422 2222222346777777765442 23444455777777662111222322 146667777788899999999
Q ss_pred HHHHHHhcCCC
Q 044999 401 AESLINFSEDP 411 (461)
Q Consensus 401 ~~~L~~l~~~~ 411 (461)
+.++..++.+.
T Consensus 587 ~~af~~i~~~C 597 (1073)
T 3gjx_A 587 CDTFIKIAQKC 597 (1073)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.19 E-value=0.31 Score=51.25 Aligned_cols=386 Identities=10% Similarity=0.065 Sum_probs=202.9
Q ss_pred CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc----C---CC---ch-----hHHHh----hHHHHHHhhccCCCCCCC
Q 044999 6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS----K---FA---PQ-----DILAA----TIPILARLLGENNFSGNL 66 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la----~---~~---~~-----~~l~~----~i~~l~~~l~~~~~~~~~ 66 (461)
..|...++.++.+++++ +.........|..|. + .. .| +.+.. +++.+.+.|.. . .
T Consensus 134 ~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~----~-~ 207 (1023)
T 4hat_C 134 QNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ----G-A 207 (1023)
T ss_dssp TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C-S
T ss_pred hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-C
Confidence 46999999999998764 344555666666655 1 10 11 12222 55555666664 2 2
Q ss_pred cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHH-hcCCCCCHHHHHHHHHHHHHHhccC---h--hhHHHHHHc--
Q 044999 67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVL-RLFPQSDDSFRTVLVKCLRVFVTFG---N--ENRVIVARN-- 138 (461)
Q Consensus 67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~~~~~~~~l~~l~~~~---~--~~~~~~~~~-- 138 (461)
+++....+..++...... -....+...+.++.+. .++ .++..+..|+.|+..+.... + .....+...
T Consensus 208 ~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~ 282 (1023)
T 4hat_C 208 SSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1023)
T ss_dssp SCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence 345666688888888764 2234566778888888 777 46778999999999877522 1 122111110
Q ss_pred CCHHHH-----------HHHh---cCCChHHHHHHHHHHHHhhC--------ChHHHHHHHhcCCHHHHHHHHcCCCHHH
Q 044999 139 GGLEIV-----------IDLL---NSCNDGTRRYLLEILSALAL--------LREVRRVLICLGGLRYLVEAVSFGSMVS 196 (461)
Q Consensus 139 g~i~~L-----------~~ll---~~~~~~~~~~a~~~L~~l~~--------~~~~~~~~~~~~~l~~l~~~l~~~~~~~ 196 (461)
+.+..+ ...+ ...|.+....-+..+..+.. +++.+..+ . .++..++..-..++.++
T Consensus 283 ~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~-~~l~~Ll~~~~~~d~ei 360 (1023)
T 4hat_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-L-NAHQYLIQLSKIEEREL 360 (1023)
T ss_dssp HHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-H-HHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-H-HHHHHHHHhhCCCcHHH
Confidence 111111 1111 11233444444444443331 11112211 1 12345555555667777
Q ss_pred HHHHHHHHHHhhcC---chhHHHHHh---cCChHHHHHhcccCC--------------------HH-HHH-HHHHHHHHH
Q 044999 197 RERACQAIGLLAVT---GRARRLLVE---LGVIPGLVELFHIGD--------------------WT-TKL-VAGNTLGVV 248 (461)
Q Consensus 197 ~~~a~~~L~~l~~~---~~~~~~~~~---~~~i~~L~~ll~~~~--------------------~~-~~~-~a~~~L~~l 248 (461)
-..++..=..++.. .+.+..+.. ...++.++..+..+. .+ ..- ..-.+|..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 66666654444321 001111110 124445555444322 00 010 111334333
Q ss_pred hcC--ccchhhhhhcCCHHHHHHHhCC--CChhHHHHHHHHHHHhccCccc--HHHHH----HHHHHHhcc-----CCHH
Q 044999 249 AAH--VEYITPVAEAGAIPLYAELLQG--PDSTGKEISEDVFCILAVSEAN--ANAIA----EHLVRILRE-----GDNE 313 (461)
Q Consensus 249 ~~~--~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~--~~~i~----~~l~~ll~~-----~~~~ 313 (461)
+.- ++.-.. .++.+.+.+.. .++..++.++.+++.++..... ..... +.|++++.. ....
T Consensus 441 ~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~ 515 (1023)
T 4hat_C 441 THLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAV 515 (1023)
T ss_dssp HHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred hccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHH
Confidence 321 111111 13444444443 4799999999999999765543 22222 777777753 2234
Q ss_pred HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHHH
Q 044999 314 ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALAD------AGAVPIMIE 387 (461)
Q Consensus 314 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~~ 387 (461)
++..++++++..+.--....... ...+..|.+.+.+.++.++..|++++.++|. +++..+.. ...++.+++
T Consensus 516 v~~t~~~~lGry~~wl~~~~~~L-~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~ 592 (1023)
T 4hat_C 516 VASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIR 592 (1023)
T ss_dssp HHHHHHHHHHTCHHHHHHCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHH
Confidence 55567788877764211111111 1245556666777789999999999999995 34445542 113444444
Q ss_pred ----hccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 388 ----LLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 388 ----ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
....-.+.-+..+..++..+...-.
T Consensus 593 ~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 593 DIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp THHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 3334567777788888888876543
No 105
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.18 E-value=0.0066 Score=51.18 Aligned_cols=171 Identities=17% Similarity=0.126 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHH
Q 044999 155 TRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGS-----MVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLV 227 (461)
Q Consensus 155 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~ 227 (461)
-...|+..+-.++.+++.|..|++.++.-.|..+|...+ +-+|-.++++++.+...++. -..+.+.+++|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 346777788888899999999999998878888887553 46899999999999876554 66778899999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHhcCccchhhhhhc--------CCHHHHH-HHhCCCChhHHHHHHHHHHHhccCcccHHH
Q 044999 228 ELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEA--------GAIPLYA-ELLQGPDSTGKEISEDVFCILAVSEANANA 298 (461)
Q Consensus 228 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 298 (461)
..++.++.-.+..|...+..+-.++..-..+... .++..++ .+.+.+++.+.++..++-..|+.++..+..
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~a 231 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREA 231 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999988888887664443333221 1222222 233566888999999999999999988877
Q ss_pred HHHHHHHHh--------ccCCHHHHHHHHHHHHHh
Q 044999 299 IAEHLVRIL--------REGDNEANAAAADVLWDL 325 (461)
Q Consensus 299 i~~~l~~ll--------~~~~~~~~~~a~~~L~~l 325 (461)
+...+=..| -.+++.++..-...+.|+
T Consensus 232 L~~~LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 232 LRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHSCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred HHHhCcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence 761111112 134666666666666665
No 106
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.011 Score=52.31 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=121.3
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcC-cc--chhhhhh--cCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcc---
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VE--YITPVAE--AGAIPLYAELLQGPDSTGKEISEDVFCILAVSEA--- 294 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~--~~~~~~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--- 294 (461)
+| |-+-+.+.++..|..|+..|..+... +. ....... ....+.+...+.+.+..++..++.++..++....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 66788899999999999999887654 11 1111111 1345667788888999999999999988753211
Q ss_pred -cHH-------HHHHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 044999 295 -NAN-------AIAEHLVR-ILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQ 365 (461)
Q Consensus 295 -~~~-------~i~~~l~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~ 365 (461)
... .+.+.++. .+.+..+.++..+..++..++........ .++.+...+.+.+|.++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111 11255554 46778899999999988888754322222 24557778889999999999888887
Q ss_pred hcCC--hhh--HHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCC
Q 044999 366 LSYN--EAD--RVALADAGAVPIMIELLHDESEELRDNAAESLINFSED 410 (461)
Q Consensus 366 l~~~--~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 410 (461)
+... ... ...... .+++.+..++.+.++.||..|..++..+-..
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 7641 111 111111 2456677788999999999999999888544
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.12 E-value=0.031 Score=49.40 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=149.8
Q ss_pred HHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-h----HHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 044999 133 VIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL-R----EVRRVLICL-GGLRYLVEAVSFGSMVSRERACQAIGL 206 (461)
Q Consensus 133 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~----~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~a~~~L~~ 206 (461)
..+...+.+..|+..+..-+.+.|..+..+..++... . .....+... .++..|+..-. ++++-..+-..|+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 3345557788888889888999999999998888732 2 234455442 24444444333 44556667777888
Q ss_pred hhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHh-cCccchhhhhhc---CCHHHHHHHhCCCChhHHHHH
Q 044999 207 LAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVA-AHVEYITPVAEA---GAIPLYAELLQGPDSTGKEIS 282 (461)
Q Consensus 207 l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~a 282 (461)
+..+....+.+...+.+..+.+.++.++-++...|..++..+- .+......+... .++...-.++.+++.-.++.+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 8888877888888888899999999999999999999988764 333333333332 456778889999999999999
Q ss_pred HHHHHHhccCcccHHHHH---------HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchh
Q 044999 283 EDVFCILAVSEANANAIA---------EHLVRILREGDNEANAAAADVLWDLAGYKHSVP 333 (461)
Q Consensus 283 ~~~L~~l~~~~~~~~~i~---------~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 333 (461)
+..|+.+-.+..+...+. ..++.+|++.+..++..|..+..-+..+|..-.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~ 289 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ 289 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence 999999988888766655 778889999999999999999999988765433
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.03 E-value=0.038 Score=47.71 Aligned_cols=176 Identities=10% Similarity=0.027 Sum_probs=117.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhc----ccCCHHHHHHHHHHHHHHhcC---ccchh
Q 044999 184 YLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELF----HIGDWTTKLVAGNTLGVVAAH---VEYIT 256 (461)
Q Consensus 184 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~---~~~~~ 256 (461)
.+...+-+.+...+..++..|.......+ ..+.. .+..++.++ .+.+..+...++..|..+... .+.+-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34444555666777777777766543222 12111 233344433 367888888888888776432 11111
Q ss_pred hhh-hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHH
Q 044999 257 PVA-EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVI 335 (461)
Q Consensus 257 ~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l 335 (461)
.-. ..-++|.|++-+.+....+|..+-.++..+... .....+.+.+.+-+++.++.++..++..+..+-......
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--- 201 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--- 201 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence 111 124589999999888889999988888777532 123334478888889999999999999999987421111
Q ss_pred hhcCCH---HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 044999 336 RNSGAI---PILVNLLRGENDEVREKVSGAIAQLSY 368 (461)
Q Consensus 336 ~~~g~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 368 (461)
....+ +.+..++.+.+..||..|+.++..+..
T Consensus 202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 13467 999999999999999999998887766
No 109
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.87 E-value=0.025 Score=48.81 Aligned_cols=174 Identities=10% Similarity=0.054 Sum_probs=114.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH----hcCCChHHHHHHHHHHHHhhCC-----h
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL----LNSCNDGTRRYLLEILSALALL-----R 170 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l----l~~~~~~~~~~a~~~L~~l~~~-----~ 170 (461)
+.+...|-+.+..-+..+...+......++ ..+.. .++.+++. +.+.++.+...++.+|..+... .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555556677656667766665544333 22221 23333442 3367888888888888776411 0
Q ss_pred HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhc
Q 044999 171 EVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAA 250 (461)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 250 (461)
.....- ..-.+|.|++-+.+..+.+|..+-.++..+....+. ..+++.+..-+++.+...+..++..+..+-.
T Consensus 124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111110 012689999999999999999888888777543222 2256778888889999999999988888865
Q ss_pred CccchhhhhhcCCH---HHHHHHhCCCChhHHHHHHHHHHHh
Q 044999 251 HVEYITPVAEAGAI---PLYAELLQGPDSTGKEISEDVFCIL 289 (461)
Q Consensus 251 ~~~~~~~~~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~~l 289 (461)
..... ....+ +.+..++.+.+..+|..|..++..+
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 42221 13457 9999999999999999888887754
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.85 E-value=0.0012 Score=56.74 Aligned_cols=141 Identities=19% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhc
Q 044999 100 NSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICL 179 (461)
Q Consensus 100 ~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 179 (461)
+.+..+++++++.|+..++..+ ..+.+..+++++++.+|..++.. +.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l------------------~~~~L~~L~~D~d~~VR~~aA~~---l~------------ 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL------------------PLEQLEQMAADRDYLVRAYVVQR---IP------------ 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS------------------CTGGGGGGTTCSSHHHHHHHHHH---SC------------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHh---cC------------
Confidence 4566777777777777766532 12245667788889999888873 21
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhh
Q 044999 180 GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVA 259 (461)
Q Consensus 180 ~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 259 (461)
.+.+..+++++++.+|..++.. + ..+.+..+++++++.++..++..+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~---l--------------~~~ll~~ll~D~d~~VR~aaa~~l-------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKR---L--------------PEESLGLMTQDPEPEVRRIVASRL-------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHH---S--------------CGGGGGGSTTCSSHHHHHHHHHHC--------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHc---C--------------CHHHHHHHHcCCCHHHHHHHHHhC--------------
Confidence 1234456678889999888774 1 124555677888888888877542
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVL 322 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L 322 (461)
..+.|..++.++++.||..++..+.- +.+..+ .+.++.|+..+...|
T Consensus 195 ---~~~~L~~Ll~D~d~~VR~~aa~~l~~------------~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 ---RGDDLLELLHDPDWTVRLAAVEHASL------------EALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp ---CGGGGGGGGGCSSHHHHHHHHHHSCH------------HHHHHC-CCCCHHHHHHHHCCC
T ss_pred ---CHHHHHHHHcCCCHHHHHHHHHcCCH------------HHHHHc-cCCCHHHHHHHHHHh
Confidence 13567777888888888888888771 334444 777888888776544
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.67 E-value=0.013 Score=55.25 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=140.7
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh---HHHHHhcCChHHHHHhcc----------cCCHHHHHHHHHHHHH
Q 044999 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA---RRLLVELGVIPGLVELFH----------IGDWTTKLVAGNTLGV 247 (461)
Q Consensus 181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~~~L~~ 247 (461)
..+.|+.-|-++.+++|-.|+.+|+.+...... +..-.+.+..-.++..+. .--..+|+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 455666666788999999999999998755432 110001122333333332 1124799999999999
Q ss_pred HhcC-ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 248 VAAH-VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 248 l~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
+ .+ ++. ..++..++..+....++++..++-.|..+...-..-..+.+.++..|.+.+++|+..|+.+|.-++
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 9 76 333 344666666667789999999999999882111113334488889999999999999999999998
Q ss_pred CCCCchhHHhhcCCHHHHHHhhcCCCH--HHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHH
Q 044999 327 GYKHSVPVIRNSGAIPILVNLLRGEND--EVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESL 404 (461)
Q Consensus 327 ~~~~~~~~l~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 404 (461)
.++.... ++..+++.|.+.++ .-.......|+.|+..+.. .-.....+|.|.-.+++.-..||..+..+|
T Consensus 328 -~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 328 -ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp -CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred -chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 3333222 34456666664321 1233444556666652221 111236688899999999999999999999
Q ss_pred HHhc
Q 044999 405 INFS 408 (461)
Q Consensus 405 ~~l~ 408 (461)
..+.
T Consensus 400 ~tfL 403 (800)
T 3oc3_A 400 KNLS 403 (800)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8888
No 112
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.43 E-value=0.14 Score=45.30 Aligned_cols=154 Identities=12% Similarity=0.026 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHH----HHHcC-CCHHHHHHHHHHHHHhhcCchhHH
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLV----EAVSF-GSMVSRERACQAIGLLAVTGRARR 215 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~----~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~ 215 (461)
+..+.+++.-+ .+.+..++..++-+..++.....+.+.+.-..++ ..+.+ ..+..+..+++++.|+-.+...+.
T Consensus 105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 45666666332 3566777888877777777776666543333333 33332 256678999999999999888876
Q ss_pred HHHh--cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC-CChhHHHHHHHHHHHhcc
Q 044999 216 LLVE--LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG-PDSTGKEISEDVFCILAV 291 (461)
Q Consensus 216 ~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 291 (461)
.+.. ..+++.+...+.+.+..++..++..+.|++.. ...+..=....++..+..++.. .++|....++.+|++|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 6654 23445555555567889999999999999875 1111100011134444455543 478899999999999976
Q ss_pred Cccc
Q 044999 292 SEAN 295 (461)
Q Consensus 292 ~~~~ 295 (461)
.+..
T Consensus 264 ~~~~ 267 (304)
T 3ebb_A 264 DDSN 267 (304)
T ss_dssp TCHH
T ss_pred CChh
Confidence 5543
No 113
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.13 E-value=0.081 Score=46.88 Aligned_cols=184 Identities=11% Similarity=0.108 Sum_probs=112.2
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH---------HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCchh
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA---------EHLVRILRE-GDNEANAAAADVLWDLAGYKHSVP 333 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~---------~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 333 (461)
+..+..++ .-+.+.+..++..++-+..++.....+. ..+...+.+ ..+..+..++++++|+-.++..+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 45555555 3344555566666666555554433322 334444433 357778999999999999888777
Q ss_pred HHhhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcC
Q 044999 334 VIRNS--GAIPILVNLLRGENDEVREKVSGAIAQLSYN-EADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSE 409 (461)
Q Consensus 334 ~l~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 409 (461)
.+... .+++.+...+.+.+..++..++..+.|++.. ...+..=....++..+..+++ ..+++....++.+|.+|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 76642 2344555555567888999999999999982 110000001113344444453 4689999999999999998
Q ss_pred CCcchHHHHHhhCCchHHhHHHHHHHhhhchhHHHHHHHHHhHh
Q 044999 410 DPLQHERISEAIGIPSFQSMQSRLTRIRASDDLMARSMRRMSIE 453 (461)
Q Consensus 410 ~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 453 (461)
.+.....+.+..+.....+... . .+.+..+.++++..+.
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~---~--~~~~~kv~~~~~~~~~ 302 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYS---S--VSEPAKVSECCRFILN 302 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGG---G--CCSSHHHHHHHHHHHT
T ss_pred CChhHHHHHHHcCHHHHHHHHH---h--CCCchhHHHHHHHHHH
Confidence 7665666666555554332222 1 1245668888877664
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.83 E-value=0.1 Score=43.76 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=99.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHH-HhCCCChhHHHHHHHHHHHhcc--CcccHHHHH
Q 044999 224 PGLVELFHIGDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAE-LLQGPDSTGKEISEDVFCILAV--SEANANAIA 300 (461)
Q Consensus 224 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~ 300 (461)
+....+.+++..++|..|+..|+.+ . .. ...++.+.. +..+.+..|++.+..++..+.. +++. ..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l 141 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---AL 141 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---TH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HH
Confidence 4444455677789999999988877 2 11 123566766 5567789999999999998863 4432 33
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHh
Q 044999 301 EHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALAD 378 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 378 (461)
+.+.....++++.+|..|...+.-.+..+..+.. -.-+++.|-.+..+++.-|+....+.|..+++ +|+....+++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 6778889999999999999888765543211111 11145666777778889999999999999999 8886555544
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.69 E-value=0.21 Score=46.48 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCC
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQAD 86 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 86 (461)
.++++..++.++.++|..+|.+|++.|..+| + +.+.++.+.|.++|+. +++......-.+|..+... +
T Consensus 63 ~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqt------dd~~E~~~V~~sL~sllk~-D 131 (507)
T 3u0r_A 63 ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQT------DDSAEFNLVNNALLSIFKM-D 131 (507)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHHH-C
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhc------cchHHHHHHHHHHHHHHhc-C
Confidence 5677788888888888888888888888888 4 2245577777777775 4444444455566666553 1
Q ss_pred chhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHH
Q 044999 87 GALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR 122 (461)
Q Consensus 87 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 122 (461)
.. +.+..+...+..+++.++..+...|.
T Consensus 132 pk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 132 AK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 11 12233333333346666777766665
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.38 E-value=0.74 Score=39.02 Aligned_cols=144 Identities=11% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHHhcCChHHHHHhccc----C-------CHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHH
Q 044999 214 RRLLVELGVIPGLVELFHI----G-------DWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEI 281 (461)
Q Consensus 214 ~~~~~~~~~i~~L~~ll~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~ 281 (461)
.+.| ..+|+..|+..+.. . +...+..++.||..+..+......+..+ +.+..+...+.++++.++..
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3344 35667777776651 1 3456778899999998886655655554 67889999999889999999
Q ss_pred HHHHHHHhccCcc--c-HHHHH---------------HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc-------hhHH
Q 044999 282 SEDVFCILAVSEA--N-ANAIA---------------EHLVRILR-EGDNEANAAAADVLWDLAGYKHS-------VPVI 335 (461)
Q Consensus 282 a~~~L~~l~~~~~--~-~~~i~---------------~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-------~~~l 335 (461)
++..|.-++..++ + ...+. ..+++.++ +.+.+.+..++..+-.+...++. +..+
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 195 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 195 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9998887765443 4 33333 66777776 44678888888888888866543 3444
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHH
Q 044999 336 RNSGAIPILVNLLRGENDEVREK 358 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~ 358 (461)
...|..+.+-.+-...++.+..+
T Consensus 196 ~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 196 MRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHCChHHHHHHHhccCCHHHHHH
Confidence 46666666655544556655444
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.37 E-value=1.8 Score=40.39 Aligned_cols=248 Identities=13% Similarity=0.052 Sum_probs=147.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCC
Q 044999 102 VLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGG 181 (461)
Q Consensus 102 L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 181 (461)
++...+ +++..++.++..+......-++.+..- +..+++++++.+..+|..|++.|..+|.+ +.... +
T Consensus 34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----i 101 (507)
T 3u0r_A 34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----V 101 (507)
T ss_dssp HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----H
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----H
Confidence 444433 467778899999988887777765543 66799999999999999999999999977 44444 3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC--ccchhhhh
Q 044999 182 LRYLVEAVSFGSMVSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH--VEYITPVA 259 (461)
Q Consensus 182 l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~ 259 (461)
...|+++|+.+++......-.+|..+...++. +.+..+...+.++++.+|+.++..|..=... .+....=.
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~ 174 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEV 174 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHH
Confidence 56789999988876666555555555433322 2455566666666788999888777654332 22222222
Q ss_pred hcCCHHHHHHHhCCCChhHHHHHHHHHHHh--ccCcccHHHHHHHHHHHh------ccCCHHHHHHHHHHHH----HhhC
Q 044999 260 EAGAIPLYAELLQGPDSTGKEISEDVFCIL--AVSEANANAIAEHLVRIL------REGDNEANAAAADVLW----DLAG 327 (461)
Q Consensus 260 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l--~~~~~~~~~i~~~l~~ll------~~~~~~~~~~a~~~L~----~l~~ 327 (461)
+.-++..+...+.+-..+--......|..+ ......+.++++.+.+.. ...+++....-+.++. .++.
T Consensus 175 E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~ 254 (507)
T 3u0r_A 175 EELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSK 254 (507)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBT
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhcc
Confidence 223455666777655554445555666655 233444556664444442 2235554444444333 3333
Q ss_pred CCCchhH--HhhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 044999 328 YKHSVPV--IRNSGAIPILVNLLRGE-NDEVREKVSGAIAQLSY 368 (461)
Q Consensus 328 ~~~~~~~--l~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 368 (461)
....... .+...++|.+-.+-... .++.+...+++++-++.
T Consensus 255 ~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~ 298 (507)
T 3u0r_A 255 NVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS 298 (507)
T ss_dssp TBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHcc
Confidence 3222211 11223555443332221 22367788888888887
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.08 E-value=0.33 Score=42.92 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchhHH-HHHhcCChHHHHHhcc-cC
Q 044999 156 RRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRARR-LLVELGVIPGLVELFH-IG 233 (461)
Q Consensus 156 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~ll~-~~ 233 (461)
...+...|.-+..+.+....+++.+|+..+....+-++.++.+..+..|...+....-+. .+ ...+|.++..+. ++
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence 344555555555788888999999999999999999999999999999998876654421 11 235788888777 77
Q ss_pred CHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhC
Q 044999 234 DWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQ 272 (461)
Q Consensus 234 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~ 272 (461)
+.++.....+.|.|...+ ...++..+..|+++.|...+.
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 889999999999999988 677777888899999988763
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.07 E-value=0.48 Score=39.71 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhhC--CCCchhHHhhcCC
Q 044999 264 IPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIAEHLVR-ILREGDNEANAAAADVLWDLAG--YKHSVPVIRNSGA 340 (461)
Q Consensus 264 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~l~~-ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~ 340 (461)
++....+.+++..++|..|+..|..+ . .. ..+.+.+.. +-...+..|++.++.++..++. +++. .
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~ 140 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A 140 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence 45556666777789999999988887 2 22 334466666 4456689999999999999984 3331 6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcCCCc
Q 044999 341 IPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 341 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
++.+..+..++++.+|+.|+..+.-.+..+..+.. ..-+++.|..+..+++..||....+.|..++....
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 67888999999999999998876543331111000 00135666667788999999999999999997754
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.00 E-value=1.6 Score=40.05 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHhcCChHHHHHhcc-----------cCCHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHH
Q 044999 214 RRLLVELGVIPGLVELFH-----------IGDWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEI 281 (461)
Q Consensus 214 ~~~~~~~~~i~~L~~ll~-----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~ 281 (461)
.+.|. .+|+..|+.++. ..+...+..++.||..+..+......+..+ ..+..+...+.+..+.++..
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 34454 567788887775 123467788899999998886666656554 77899999999999999999
Q ss_pred HHHHHHHhccCcc--c-HHHHH---------------HHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCc-------hhHH
Q 044999 282 SEDVFCILAVSEA--N-ANAIA---------------EHLVRILRE-GDNEANAAAADVLWDLAGYKHS-------VPVI 335 (461)
Q Consensus 282 a~~~L~~l~~~~~--~-~~~i~---------------~~l~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-------~~~l 335 (461)
++..|.-++..++ + ...+. ..+++.|++ .+.+.+..++..+-.+...++. +..+
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999988865543 3 33332 677888876 5788888888888888866433 3444
Q ss_pred hhcCCHHHHHHhhcCCCHHHHHH
Q 044999 336 RNSGAIPILVNLLRGENDEVREK 358 (461)
Q Consensus 336 ~~~g~i~~L~~ll~~~~~~v~~~ 358 (461)
...|..+.+-.+=...++.+..+
T Consensus 262 ~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 262 MRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHCChHHHHHHHhcCCChhHHHH
Confidence 46666666665433445555443
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.19 E-value=4.5 Score=42.77 Aligned_cols=161 Identities=12% Similarity=0.094 Sum_probs=99.1
Q ss_pred hHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC----ChhHHHHHHHHHHHhc----cCc
Q 044999 223 IPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP----DSTGKEISEDVFCILA----VSE 293 (461)
Q Consensus 223 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~----~~~~~~~a~~~L~~l~----~~~ 293 (461)
+..+.+++.++.....+ |+.+|...... ....+ .+..+..+++++ ++.++..+..+++.|. ...
T Consensus 358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~ 430 (1056)
T 1lsh_A 358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT 430 (1056)
T ss_dssp HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence 44555555555433333 33444433222 12222 256777777653 5677777777777763 221
Q ss_pred -c----cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcC-------CCHHHHHHHHH
Q 044999 294 -A----NANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRG-------ENDEVREKVSG 361 (461)
Q Consensus 294 -~----~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~-------~~~~v~~~a~~ 361 (461)
. ....+.+.+.+.+...+.+.+..++.+|+|+... ..++.|..++.. ...+++..|++
T Consensus 431 ~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 431 VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 1 1223336666667777888899999999999642 356667777642 24578889999
Q ss_pred HHHHhcC-ChhhHHHHHhCCChHHHHHhc--cCCCHHHHHHHHHHHHHhc
Q 044999 362 AIAQLSY-NEADRVALADAGAVPIMIELL--HDESEELRDNAAESLINFS 408 (461)
Q Consensus 362 ~L~~l~~-~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~ 408 (461)
+|.+++. .+.. +-+.+.++. ...++++|..|...|....
T Consensus 501 ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 501 ALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp TTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence 9999986 3331 234566666 4578999998888886543
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.68 E-value=7.5 Score=41.84 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcC----CchhHHHHHhcC
Q 044999 23 SEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQA----DGALATEIGQSG 97 (461)
Q Consensus 23 ~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~ 97 (461)
+...|..|-..|..+. ++. ....+...|.. .+.++.++..|+..|.+..... +++.+..+ ...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~-------~~~~~~~~L~~----~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP-------ICVPCGLRLAE----KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-------THHHHHHHHTS----TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHHhCch-------HHHHHHHHHHc----cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence 7778888888887766 332 22333333322 3344556666888998887530 12233333 333
Q ss_pred CHHHHHhcCC---CCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCC-----
Q 044999 98 VINSVLRLFP---QSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALL----- 169 (461)
Q Consensus 98 ~l~~L~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----- 169 (461)
.+..+.+... ..++.++...+.++..++..+-..+ =.+.++.++.++++ ++..++.++.+|..+++.
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 4444444322 1457778888888887765321100 12457778887766 556677888888887632
Q ss_pred --hHHHH-----HHHhc--CCHHHHHHHHcC-------------------CCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 044999 170 --REVRR-----VLICL--GGLRYLVEAVSF-------------------GSMVSRERACQAIGLLAVTGRARRLLVELG 221 (461)
Q Consensus 170 --~~~~~-----~~~~~--~~l~~l~~~l~~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (461)
...+. .+.+. .++..+..++.. .+..++..++.++.+...--+. ..+.+..
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhcc
Confidence 11111 11111 122333333332 1234566777777655432222 2222322
Q ss_pred --ChHHHHHhcccCCHHHHHHHHHHHHHHhcCc---cchhhhhhc---CCHHHHHHHhC--C------CChhHHHHHHHH
Q 044999 222 --VIPGLVELFHIGDWTTKLVAGNTLGVVAAHV---EYITPVAEA---GAIPLYAELLQ--G------PDSTGKEISEDV 285 (461)
Q Consensus 222 --~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~---g~i~~L~~ll~--~------~~~~~~~~a~~~ 285 (461)
.++.+..++. +++++..|+.+|..+.... +.+..++.. ..+..++.... + .+.++.+..+..
T Consensus 248 ~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l 325 (1204)
T 3a6p_A 248 CKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV 325 (1204)
T ss_dssp SHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence 5666665554 4678899999999998752 222223221 11234444432 1 134555566666
Q ss_pred HHHhc-------------cCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 044999 286 FCILA-------------VSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGY 328 (461)
Q Consensus 286 L~~l~-------------~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~ 328 (461)
+..+. .....-..+.+.++.++...+..+-..++..-..+...
T Consensus 326 l~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 326 LCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 55553 12223334447888888777777777777655556544
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.14 E-value=11 Score=40.55 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=118.2
Q ss_pred HhHHHHHHHhhc-------CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 10 EAFNRFEQAVVS-------GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 10 ~~~~~l~~ll~~-------~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
.....++..+.+ .+..++.+.+.++..++ .+-+ ..+.+.++.++++++. + +.....+..+|..+
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~----~---~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ----G---ETQTELVMFILLRL 160 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT----C---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC----C---HHHHHHHHHHHHHH
Confidence 334556666553 35788888899999988 3222 2233477888888874 2 22344488888888
Q ss_pred HhcC-C----chh-----HHHHHhc--CCHHHHHhcCCC-------------------CCHHHHHHHHHHHHHHhccChh
Q 044999 82 ASQA-D----GAL-----ATEIGQS--GVINSVLRLFPQ-------------------SDDSFRTVLVKCLRVFVTFGNE 130 (461)
Q Consensus 82 ~~~~-~----~~~-----~~~~~~~--~~l~~L~~ll~~-------------------~~~~~~~~~~~~l~~l~~~~~~ 130 (461)
+++- + ... +..+.+. ..++.+...+.. .+..+...+..++.+...--+
T Consensus 161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~- 239 (1204)
T 3a6p_A 161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS- 239 (1204)
T ss_dssp HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-
Confidence 7620 0 001 1112111 111222222221 112234444444443332111
Q ss_pred hHHHHHHcC--CHHHHHHHhcCCChHHHHHHHHHHHHhhC-C--hHHHHHHHhc---CCHHHHHHHHc--------CCCH
Q 044999 131 NRVIVARNG--GLEIVIDLLNSCNDGTRRYLLEILSALAL-L--REVRRVLICL---GGLRYLVEAVS--------FGSM 194 (461)
Q Consensus 131 ~~~~~~~~g--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~--~~~~~~~~~~---~~l~~l~~~l~--------~~~~ 194 (461)
-..+.+.. .++.++.++. ++.++..|+.+|..+.. . ++.+..++.. .++..++.... +.+.
T Consensus 240 -~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~ 316 (1204)
T 3a6p_A 240 -MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHY 316 (1204)
T ss_dssp -HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHH
T ss_pred -HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHH
Confidence 12222322 5666666655 46789999999999983 2 2333333321 12334555542 1134
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHh----------cCChHHHHHhcccCCHHHHHHHHHHHHHHhcC
Q 044999 195 VSRERACQAIGLLAVTGRARRLLVE----------LGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 251 (461)
+.....++.+..+... ....+.+ .++++.++.++.+++..+-..++.....+..+
T Consensus 317 e~~k~l~~ll~~lg~~--l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 317 VFLKRLCQVLCALGNQ--LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 6666667676666521 1111110 23577777777788888777777766656655
No 124
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.68 E-value=5.3 Score=36.66 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred cCChHHHHHhccc-----------CCHHHHHHHHHHHHHHhcCccchhhhhhc-CCHHHHHHHhCCCChhHHHHHHHHHH
Q 044999 220 LGVIPGLVELFHI-----------GDWTTKLVAGNTLGVVAAHVEYITPVAEA-GAIPLYAELLQGPDSTGKEISEDVFC 287 (461)
Q Consensus 220 ~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~ 287 (461)
.+|+..|+..|.. .+...+..++.||..+..+......+..+ +++..+...+.+..+.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4566666666641 13466778899999998886555555554 77888999998889999999998887
Q ss_pred HhccCcc--c-HHHHH---------------HHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc-------hhHHhhcCCH
Q 044999 288 ILAVSEA--N-ANAIA---------------EHLVRILR-EGDNEANAAAADVLWDLAGYKHS-------VPVIRNSGAI 341 (461)
Q Consensus 288 ~l~~~~~--~-~~~i~---------------~~l~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-------~~~l~~~g~i 341 (461)
.++..++ + ...+. ..+++.+. +.+.+.+..++..+-.+...++. +..+...|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 7765443 3 33332 56777776 44678888888888888866543 4455566666
Q ss_pred HHHHHhhcCCCHHHHHH
Q 044999 342 PILVNLLRGENDEVREK 358 (461)
Q Consensus 342 ~~L~~ll~~~~~~v~~~ 358 (461)
+.+-.+-...++.+..+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 66665554556655444
No 125
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.79 E-value=15 Score=38.81 Aligned_cols=385 Identities=11% Similarity=0.063 Sum_probs=190.9
Q ss_pred CcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-C--CC-------c-----hhHHHh----hHHHHHHhhccCCCCCCC
Q 044999 6 TNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-K--FA-------P-----QDILAA----TIPILARLLGENNFSGNL 66 (461)
Q Consensus 6 ~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~--~~-------~-----~~~l~~----~i~~l~~~l~~~~~~~~~ 66 (461)
..|...++.++.++++. +.........|..|. . .. . ++.+.. +++.+...|.. . .
T Consensus 146 ~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~----~-~ 219 (1073)
T 3gjx_A 146 KHWPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMEN----S-Q 219 (1073)
T ss_dssp TTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHH----C-C
T ss_pred hhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-C
Confidence 36999999999988653 445566677777776 2 11 1 122333 44444555654 2 3
Q ss_pred cHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHH-HhcCCCCCHHHHHHHHHHHHHHhccC-hhhHHHHHH--cCCHH
Q 044999 67 TRSIQQAAAYCLKQIASQADGALATEIGQSGVINSV-LRLFPQSDDSFRTVLVKCLRVFVTFG-NENRVIVAR--NGGLE 142 (461)
Q Consensus 67 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~--~g~i~ 142 (461)
+++....+..+|...... - ....+...+.++.+ ...| +++..+..|+.|+..+...+ ++....+.. .+.+.
T Consensus 220 ~~~lv~~~L~~L~~~~sW-I--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 220 NAPLVHATLETLLRFLNW-I--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp CHHHHHHHHHHHHHHTTT-S--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-c--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 455666688889888875 2 23456678888888 4777 46778999999999777542 222222211 11122
Q ss_pred HHHHHhcC-------------CChHHHHHHHHHHHHhhCChHHHHHHHhc-C-------CHHHHHHHHcCCCHHHHHHHH
Q 044999 143 IVIDLLNS-------------CNDGTRRYLLEILSALALLREVRRVLICL-G-------GLRYLVEAVSFGSMVSRERAC 201 (461)
Q Consensus 143 ~L~~ll~~-------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~-------~l~~l~~~l~~~~~~~~~~a~ 201 (461)
.+..++.. .+.+....-+..+..+.. .....+... + ++..++.+-..++.++-..++
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e--~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf 372 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLK--EHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICL 372 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHH--HHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHH--HHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 22222211 112222333333333321 111112111 1 344455555667778777666
Q ss_pred HHHHHhhcC----c------------------hhHHHHHh---cCChHHHHHhcccCC--------------------HH
Q 044999 202 QAIGLLAVT----G------------------RARRLLVE---LGVIPGLVELFHIGD--------------------WT 236 (461)
Q Consensus 202 ~~L~~l~~~----~------------------~~~~~~~~---~~~i~~L~~ll~~~~--------------------~~ 236 (461)
..=..+... . ..++.+.. ......++.-+..++ .+
T Consensus 373 ~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~ 452 (1073)
T 3gjx_A 373 EYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDS 452 (1073)
T ss_dssp HHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHH
T ss_pred HHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcch
Confidence 553333211 0 01111111 112223333333211 00
Q ss_pred --HHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC--CChhHHHHHHHHHHHhccCcc--cHHHHH----HHHHH
Q 044999 237 --TKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG--PDSTGKEISEDVFCILAVSEA--NANAIA----EHLVR 305 (461)
Q Consensus 237 --~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~--~~~~i~----~~l~~ 305 (461)
.....-.+|..++.. .+....+ ..+.+.+.+.. .++...+.++++++.++..-. ....+. +.|++
T Consensus 453 ~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~ 528 (1073)
T 3gjx_A 453 INLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLG 528 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhc
Confidence 111111233333311 1111111 13444444443 368899999999999965433 222333 55555
Q ss_pred HhccCC---HH--HHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCChhhHHHHHhC-
Q 044999 306 ILREGD---NE--ANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSYNEADRVALADA- 379 (461)
Q Consensus 306 ll~~~~---~~--~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~- 379 (461)
+..... .. ++...+.+++..+.--.....+.+ ..+..|.+.+.+.++.++..|+.++..+|. +++..++..
T Consensus 529 L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~vl~~L~~~m~~~~~~vq~aA~~af~~i~~--~C~~~lv~~~ 605 (1073)
T 3gjx_A 529 LCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-TVVNKLFEFMHETHDGVQDMACDTFIKIAQ--KCRRHFVQVQ 605 (1073)
T ss_dssp HHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH--HTGGGGTSCC
T ss_pred ccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HHHHHHhhcc
Confidence 554331 12 233334555555432111122222 256667777888899999999999999995 334444331
Q ss_pred -C----ChHHHHHhc----cCCCHHHHHHHHHHHHHhcCC
Q 044999 380 -G----AVPIMIELL----HDESEELRDNAAESLINFSED 410 (461)
Q Consensus 380 -~----~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~ 410 (461)
| .++.+++.+ ..-.++-......++..+...
T Consensus 606 ~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 606 VGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp TTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 234444432 223566666666677766544
No 126
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.10 E-value=4.1 Score=35.50 Aligned_cols=142 Identities=8% Similarity=-0.033 Sum_probs=88.4
Q ss_pred HHHHHhcCC------ChHHHHHHHHHHHHhhCChHHHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-
Q 044999 143 IVIDLLNSC------NDGTRRYLLEILSALALLREVRRVLICL--GGLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA- 213 (461)
Q Consensus 143 ~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~- 213 (461)
...+++.++ +...-..|+..|..++.+-..--.+.+. ..+..|+ +....++.+++.+.++++....+++.
T Consensus 26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~A 104 (315)
T 3qml_C 26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPV 104 (315)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHH
Confidence 345555554 3345688999999999888887777753 2344444 33445778999999999999988887
Q ss_pred HHHHHh--cCChHHHHHhccc-------CCHHHHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHH
Q 044999 214 RRLLVE--LGVIPGLVELFHI-------GDWTTKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGP--DSTGKEIS 282 (461)
Q Consensus 214 ~~~~~~--~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a 282 (461)
-..+.+ ..++..+..-|.. ....++..-+.+|..|..++. .+ ...++..|.+++... ++.++..+
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kv 180 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKV 180 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHH
Confidence 444444 3344444433332 234556666777777776641 12 233467777776655 67777766
Q ss_pred HHHHHHh
Q 044999 283 EDVFCIL 289 (461)
Q Consensus 283 ~~~L~~l 289 (461)
+..+..+
T Consensus 181 l~li~d~ 187 (315)
T 3qml_C 181 LELISKI 187 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 127
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.84 E-value=3.5 Score=36.64 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=86.7
Q ss_pred HHHHhccChhhHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHc-CCCHHHHHH
Q 044999 121 LRVFVTFGNENRVIVARNGGLEIVIDLLNSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVS-FGSMVSRER 199 (461)
Q Consensus 121 l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~ 199 (461)
+.++..++...-..+++.+|+..+.....-++.++....+..|...+........-. ...+|-++..+. +++.++.+.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 347777887888999999999999999999999999999999998875443321111 235666666664 668899999
Q ss_pred HHHHHHHhhcCchh-HHHHHhcCChHHHHHhcc
Q 044999 200 ACQAIGLLAVTGRA-RRLLVELGVIPGLVELFH 231 (461)
Q Consensus 200 a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~ 231 (461)
..+.|.|...+... ++.-...|+++.|-..+.
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 99999999888776 777778899998888765
No 128
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.59 E-value=7.7 Score=33.82 Aligned_cols=153 Identities=10% Similarity=0.162 Sum_probs=100.7
Q ss_pred CCcHHHhHHHHHHHhhcC------CHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHH
Q 044999 5 DTNWEEAFNRFEQAVVSG------SEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAY 76 (461)
Q Consensus 5 ~~~~~~~~~~l~~ll~~~------~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~ 76 (461)
++.....|..+..++.++ |......|+..|..++ +......|.+ -.+.|-.++.. ...++.+...|++
T Consensus 17 ~yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~~~----~~~~~~~rE~aar 92 (315)
T 3qml_C 17 DYEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLN----ENLPLTLRELSTR 92 (315)
T ss_dssp CCTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHHHC----TTSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHHhh----ccCChhHHHHHHH
Confidence 455778889999999998 5556778889999999 7766666665 55555555533 3344556666888
Q ss_pred HHHHHHhcCCchhHHHHHhc--CCHHHHHhcCCC-------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHH
Q 044999 77 CLKQIASQADGALATEIGQS--GVINSVLRLFPQ-------SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDL 147 (461)
Q Consensus 77 ~L~~l~~~~~~~~~~~~~~~--~~l~~L~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~l 147 (461)
.+..-... ++.....+... .++..+..-|.. ....+++..+..+-.|...+. .+ ...++..|.++
T Consensus 93 II~ssLRN-NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~----~F-~~~~m~~L~~l 166 (315)
T 3qml_C 93 VITSCLRN-NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE----DL-PIYSTVVLQNV 166 (315)
T ss_dssp HHHHHHTT-CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST----TC---CCHHHHHHH
T ss_pred HHHHHHcc-CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH----hh-hhccHHHHHHH
Confidence 88888886 56555555443 334444433322 233456666666667775542 12 25578888888
Q ss_pred hcCC--ChHHHHHHHHHHHHhh
Q 044999 148 LNSC--NDGTRRYLLEILSALA 167 (461)
Q Consensus 148 l~~~--~~~~~~~a~~~L~~l~ 167 (461)
+... ++.++..++..+..+-
T Consensus 167 y~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 167 YERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHc
Confidence 8777 8889998888887665
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.53 E-value=18 Score=38.17 Aligned_cols=170 Identities=10% Similarity=0.074 Sum_probs=107.6
Q ss_pred HHhHHHHHHHhhc----CCHHHHHHHHHHHHhhc-----C-CCch-hHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHH
Q 044999 9 EEAFNRFEQAVVS----GSEALQVKALTKLARVS-----K-FAPQ-DILAATIPILARLLGENNFSGNLTRSIQQAAAYC 77 (461)
Q Consensus 9 ~~~~~~l~~ll~~----~~~~~~~~a~~~l~~la-----~-~~~~-~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~ 77 (461)
++.++.+..++.+ .++.++..+..+++.|. + .... ..+......+.+.+.. + +......++.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~----~--~~~~~~~~Lka 463 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR----A--KEEEIVLALKA 463 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT----T--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc----C--ChHHHHHHHHH
Confidence 4455666666665 35667777777777776 2 2212 2222255566666665 3 34455558899
Q ss_pred HHHHHhcCCchhHHHHHhcCCHHHHHhcCCC-------CCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHh--
Q 044999 78 LKQIASQADGALATEIGQSGVINSVLRLFPQ-------SDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLL-- 148 (461)
Q Consensus 78 L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll-- 148 (461)
|.|+.. + ..++.|.+++.. ....++..|..++..++...+.. +-+.++.+.
T Consensus 464 LGN~g~--p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n 523 (1056)
T 1lsh_A 464 LGNAGQ--P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLN 523 (1056)
T ss_dssp HHHHTC--G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHC
T ss_pred hhccCC--h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcC
Confidence 999987 3 245667776642 23467788888888888654322 233466766
Q ss_pred cCCChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCchh
Q 044999 149 NSCNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLAVTGRA 213 (461)
Q Consensus 149 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~ 213 (461)
...++++|..|+..|....-... .+..+...+.. .+.++.......|.+++.....
T Consensus 524 ~~e~~EvRiaA~~~Lm~t~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 524 VAIKSELRIRSCIVFFESKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp TTSCHHHHHHHHHHHHHTCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CCCChHHHHHHHHHHHHHCcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 44567999999988864432111 35556666665 4889999999999999887654
No 130
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.24 E-value=11 Score=31.78 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=93.9
Q ss_pred cChhhHHHHHHcCCHHHHHHHhcCC-----------ChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCH
Q 044999 127 FGNENRVIVARNGGLEIVIDLLNSC-----------NDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSM 194 (461)
Q Consensus 127 ~~~~~~~~~~~~g~i~~L~~ll~~~-----------~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~ 194 (461)
.+..=-..| ..+|+..|++.+... +...+..++.+|..+..+......+.. .+.+..+...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 333334555 467888888876421 346678889999999988877777766 4588889999988899
Q ss_pred HHHHHHHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHHH-hcCcc------
Q 044999 195 VSRERACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGVV-AAHVE------ 253 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l-~~~~~------ 253 (461)
.++..++..|..++..++ . ...+. +..-+..+++.+.+ .+.+.+..+. .+.|. ...++
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m-~lIN~li~~~~dl~~R~ 189 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALITPAEELDFRV 189 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHH-HHHHHHHCCCCCHHHHH
Confidence 999999999988886654 2 32222 23356667777774 3444544444 44443 33332
Q ss_pred -chhhhhhcCCHHHHHHHhCCCChhHH
Q 044999 254 -YITPVAEAGAIPLYAELLQGPDSTGK 279 (461)
Q Consensus 254 -~~~~~~~~g~i~~L~~ll~~~~~~~~ 279 (461)
.|..+...|..+.+-.+=...++++.
T Consensus 190 ~lR~ef~~~Gl~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 190 HIRSELMRLGLHQVLQELREIENEDMK 216 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHCChHHHHHHHhccCCHHHH
Confidence 24455556644444444333444443
No 131
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.83 E-value=18 Score=32.92 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCCC
Q 044999 196 SRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQGP 274 (461)
Q Consensus 196 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~~ 274 (461)
.+...+.-+..+..+.+. .. -.++++.++.+-.+.+.+++.+.+..|...+.. .+.. ...++.|..++.+.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sL--l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~ 112 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TL--LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE 112 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GG--GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccCH-HH--HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC
Confidence 455555555554433211 11 135788999988899999999999999888753 2222 23478899999988
Q ss_pred ChhHHHHHHHHHHHh--------ccCcc------cHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhh--CCC---Cc
Q 044999 275 DSTGKEISEDVFCIL--------AVSEA------NANAIA----EHLVRILREGDNEANAAAADVLWDLA--GYK---HS 331 (461)
Q Consensus 275 ~~~~~~~a~~~L~~l--------~~~~~------~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~--~~~---~~ 331 (461)
++.+.+.++.+..++ +.++. ..+... ..++.++.+++..++..|++++-.+. ..+ +.
T Consensus 113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~ 192 (386)
T 3o2t_A 113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADS 192 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 999888887766655 22332 122222 88888899999999999999887765 111 10
Q ss_pred h-----------------------hHHh--hcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChH
Q 044999 332 V-----------------------PVIR--NSGAIPILVNLLRGE--NDEVREKVSGAIAQLSY-NEADRVALADAGAVP 383 (461)
Q Consensus 332 ~-----------------------~~l~--~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~ 383 (461)
. ..+- ..+.+..|+.++... ++.....++.+|..+++ .|..-..++ +
T Consensus 193 ~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl-----~ 267 (386)
T 3o2t_A 193 EIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI-----Q 267 (386)
T ss_dssp CCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH-----H
T ss_pred ccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH-----H
Confidence 0 0111 123467777777753 34455567788888888 776555553 3
Q ss_pred HHHHhc--------cCCCHHHHHHHHHHHHHhcCCCcc
Q 044999 384 IMIELL--------HDESEELRDNAAESLINFSEDPLQ 413 (461)
Q Consensus 384 ~L~~ll--------~~~~~~~~~~a~~~L~~l~~~~~~ 413 (461)
.|..+- +.....++...-..|.++..++..
T Consensus 268 aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s 305 (386)
T 3o2t_A 268 AYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPAS 305 (386)
T ss_dssp HHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 333221 123455777777788888877654
No 132
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.17 E-value=20 Score=32.76 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=100.8
Q ss_pred HHHHH-HHhccChhhHHHHHHcCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHH
Q 044999 118 VKCLR-VFVTFGNENRVIVARNGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALLREVRRVLIC-LGGLRY 184 (461)
Q Consensus 118 ~~~l~-~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~ 184 (461)
...|. .|......--..|. .+|+..|+++|.. .+...+..++.+|..+..+......+.. ..++..
T Consensus 88 L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~ 166 (383)
T 3eg5_B 88 LESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL 166 (383)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHH
Confidence 33444 34433334445555 6788888887742 2347788899999999988877777776 458899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHH-Hh
Q 044999 185 LVEAVSFGSMVSRERACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGV-VA 249 (461)
Q Consensus 185 l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~-l~ 249 (461)
+...+.+.++.++..++..|..+|..++ + ...+. +..-+..++..+.+ .+.+.+..+. .+.| +.
T Consensus 167 l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m-~lIN~li 245 (383)
T 3eg5_B 167 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL-QLINALI 245 (383)
T ss_dssp HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH-HHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH-HHHHHHH
Confidence 9999999999999999999998887654 2 33322 23457788888886 4555555444 4444 33
Q ss_pred cCcc-------chhhhhhcCCHHHHHHHhCCC-ChhH
Q 044999 250 AHVE-------YITPVAEAGAIPLYAELLQGP-DSTG 278 (461)
Q Consensus 250 ~~~~-------~~~~~~~~g~i~~L~~ll~~~-~~~~ 278 (461)
..++ .|..+...|..+.+-. ++.. ++++
T Consensus 246 ~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 246 TPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp TTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred cCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence 3322 2444555675444444 5543 4444
No 133
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.13 E-value=23 Score=32.45 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=92.5
Q ss_pred HHHHHHcCCHHHHHHHhcC-----------CChHHHHHHHHHHHHhhCChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHH
Q 044999 132 RVIVARNGGLEIVIDLLNS-----------CNDGTRRYLLEILSALALLREVRRVLIC-LGGLRYLVEAVSFGSMVSRER 199 (461)
Q Consensus 132 ~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~ 199 (461)
-..|. .+|+..|+.+|.. .+......++.+|..+..+......+.. .+++..+...+.+.++.++..
T Consensus 41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~ 119 (386)
T 2bnx_A 41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 119 (386)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 34443 5677777776632 1346778899999999988777776665 468888999998889999999
Q ss_pred HHHHHHHhhcCch--h-HHHHH----------hcCChHHHHHhccc-CCHHHHHHHHHHHHHH-hcCcc-------chhh
Q 044999 200 ACQAIGLLAVTGR--A-RRLLV----------ELGVIPGLVELFHI-GDWTTKLVAGNTLGVV-AAHVE-------YITP 257 (461)
Q Consensus 200 a~~~L~~l~~~~~--~-~~~~~----------~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l-~~~~~-------~~~~ 257 (461)
++..|..+|..++ . ...+. +..-+..++..+.+ .+.+.+..+ ..+.|. ...++ .|..
T Consensus 120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~-m~lIN~lv~~~~dl~~R~~LR~E 198 (386)
T 2bnx_A 120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC-LQLINALITPAEELDFRVHIRSE 198 (386)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH-HHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999988887654 2 22222 23356678887774 344554444 444444 33332 2455
Q ss_pred hhhcCCHHHHHHHhCCCChhHHH
Q 044999 258 VAEAGAIPLYAELLQGPDSTGKE 280 (461)
Q Consensus 258 ~~~~g~i~~L~~ll~~~~~~~~~ 280 (461)
+...|+.+.+-.+-...++++..
T Consensus 199 f~~~GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 199 LMRLGLHQVLQELREIENEDMKV 221 (386)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHCChHHHHHHHhccCChhHHH
Confidence 56667555444443334555443
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.22 E-value=19 Score=30.76 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC-ccchhhhhhcCCHHHHHHHhCC
Q 044999 195 VSRERACQAIGLLAVTGRARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH-VEYITPVAEAGAIPLYAELLQG 273 (461)
Q Consensus 195 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~i~~L~~ll~~ 273 (461)
+.+...+.-...+..+.+.. .+ ..+++.++.+..+.+.+++...+..+...+.. ++.. ...++.|..++++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh-HH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcC
Confidence 55666666666655543321 11 23677777777778889999999999888744 2222 2347888889998
Q ss_pred CChhHHHHHHHHHHHh--------ccCcc------cHHHHH----HHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 274 PDSTGKEISEDVFCIL--------AVSEA------NANAIA----EHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 274 ~~~~~~~~a~~~L~~l--------~~~~~------~~~~i~----~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
.++.+.+.+..+..++ +.++. ..+... ..+++++.+.+..++..+++.+-.+.
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8898888887766554 33332 122222 88889999999999999999888765
No 135
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=82.41 E-value=22 Score=30.29 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=97.2
Q ss_pred CCcHHHhHHHHHHHhhc---CCHHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccCCCCCCCcHHHHHHHHHHHHH
Q 044999 5 DTNWEEAFNRFEQAVVS---GSEALQVKALTKLARVS-KFAPQDILAATIPILARLLGENNFSGNLTRSIQQAAAYCLKQ 80 (461)
Q Consensus 5 ~~~~~~~~~~l~~ll~~---~~~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~ 80 (461)
|.+.+...+.++.+++. .....+.........++ +..+. .+.+.++.++.+.. + .+.++++..+.++..
T Consensus 7 ~~~~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~-----~-~~~~vrk~~~~Fi~e 79 (257)
T 3gs3_A 7 DEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE-LAEEFLESVLSLAH-----D-SNMEVRKQVVAFVEQ 79 (257)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGG-----C-SCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhcc-----C-ChHHHHHHHHHHHHH
Confidence 34566677777777774 23478999999999988 65443 55668888888643 3 557788888899988
Q ss_pred HHhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHH--------HHhccChh--hHHHH--HHcCCHHHHHHHh
Q 044999 81 IASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLR--------VFVTFGNE--NRVIV--ARNGGLEIVIDLL 148 (461)
Q Consensus 81 l~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~--------~l~~~~~~--~~~~~--~~~g~i~~L~~ll 148 (461)
.+.. ..+.. ...++.|..++++.++.+.+.+..+.. .++..... ..... .-...-..++.++
T Consensus 80 ~~~~-k~~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~ 153 (257)
T 3gs3_A 80 VCKV-KVELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMI 153 (257)
T ss_dssp HHHH-CGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHH-HHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8874 33332 234678888899989988777665554 22322210 01111 1122334566677
Q ss_pred cCCChHHHHHHHHHHHHhh
Q 044999 149 NSCNDGTRRYLLEILSALA 167 (461)
Q Consensus 149 ~~~~~~~~~~a~~~L~~l~ 167 (461)
.+.+..++..+++.+..+.
T Consensus 154 ~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 154 DNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp GSSCHHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHH
Confidence 8888899999998777643
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.32 E-value=16 Score=28.05 Aligned_cols=72 Identities=10% Similarity=0.153 Sum_probs=54.6
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHHHHhcCCC------CCHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINSVLRLFPQ------SDDSFRTVLVKCLR 122 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~~~~l~ 122 (461)
++..+.+-|++ .++.+|..|+..|-.+..+.....+..+....++..|+++++. .++.|+..+...+.
T Consensus 39 a~rai~krl~~------~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 39 APWLLAHKIQS------PQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 45666666665 4677888898888888885446788888888899999999874 36788888887777
Q ss_pred HHhc
Q 044999 123 VFVT 126 (461)
Q Consensus 123 ~l~~ 126 (461)
..+.
T Consensus 113 ~W~~ 116 (148)
T 1mhq_A 113 SWTV 116 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.51 E-value=2.4 Score=32.45 Aligned_cols=70 Identities=3% Similarity=0.107 Sum_probs=54.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHDESEELRDNAAESLINFSE 409 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 409 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.+...+..|+.++...++.++..+...+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45667778888899999999988888877 34555566666677778888877889999999999987764
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=79.53 E-value=5.9 Score=30.25 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 209 (461)
+..+.+-+.+.++.++..|+..|-.+. -.......+....++..++.++...++.++...+..+..-+.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 556777788889999999999988887 346667777777788888888877788999999988876653
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.54 E-value=5 Score=31.01 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=58.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhcCCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD------ESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~ 411 (461)
++..|.+-++++++.++..|+..|-.+.. .+..+..+.+...+..|++++.. .++.++..+...+...+...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45667788889999999999998888888 45667777777888889988853 47899999999998886543
No 140
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=78.14 E-value=40 Score=30.66 Aligned_cols=128 Identities=11% Similarity=0.013 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHhccCCHHHH
Q 044999 237 TKLVAGNTLGVVAAHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILA-VSEANANAIAEHLVRILREGDNEAN 315 (461)
Q Consensus 237 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~l~~ll~~~~~~~~ 315 (461)
.+...+.-+..|..+.+- . .-..+++.++.+-.+.+.++|++.+..+.... ...+....+.+.|..++.+.++.+.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-s--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-T--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-G--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-H--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 344455555555443111 1 22466899999998889999999999998774 3444444555888899998899998
Q ss_pred HHHHHHHHHhh--------CCCCch---hHHh--hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 316 AAAADVLWDLA--------GYKHSV---PVIR--NSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 316 ~~a~~~L~~l~--------~~~~~~---~~l~--~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
..++.+..++- .++... +... -..+-..++.++.+.+..++..+++.+-.+.
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88877766653 122210 1111 1122344666677888999999988777654
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.31 E-value=5.3 Score=30.86 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=57.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhcCCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD------ESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~ 411 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.....+..|++++.. .++.++..+...+...+...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45567788888999999999998888887 45566777777788889988853 57899999999998887543
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=76.72 E-value=10 Score=29.24 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRYLVEAVSF------GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~ 209 (461)
+..|.+-+.+.++.++..|+.+|-.+. -...+...+....++..|+.++.. .+..++...+..+..-+.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456777788999999999999999888 456777888888899999999863 477999999988877654
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.54 E-value=9.1 Score=30.09 Aligned_cols=68 Identities=9% Similarity=-0.073 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSF-GSMVSRERACQAIGLLA 208 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~ 208 (461)
+..|.+-+.+.++.++..|+.+|-.+.. ...++..+....++..|+.++.. .++.++..++..+..-+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4457777888999999999999998883 46777778777888888888875 47789988888776654
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.16 E-value=7.6 Score=30.56 Aligned_cols=71 Identities=4% Similarity=0.104 Sum_probs=55.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC-CCHHHHHHHHHHHHHhcCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD-ESEELRDNAAESLINFSED 410 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~ 410 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.+...+..|++++.. .++.|+..+...+...+..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999998888887 45566667666778888888854 6789999999988877643
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.77 E-value=13 Score=29.51 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALL--REVRRVLICLGGLRYLVEAVSF------GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~a~~~L~~l~~ 209 (461)
+..|.+-+.+.++.++..|+.+|-.+..+ ..++..+....++..|+.++.. .+..++..++..+..-+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999843 5677788888899999999863 367899999988877654
No 146
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=69.61 E-value=5.1 Score=34.27 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=66.5
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCC-chhHHhhcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhcC-ChhhHHHH
Q 044999 307 LREGDNEANAAAADVLWDLAGYKH-SVPVIRNSGAIPILVNLLRG--------ENDEVREKVSGAIAQLSY-NEADRVAL 376 (461)
Q Consensus 307 l~~~~~~~~~~a~~~L~~l~~~~~-~~~~l~~~g~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~-~~~~~~~~ 376 (461)
+.+..+..+..++++++|+-.++. .+..+..+.....+++.+.+ .+..++..++..+.|++. ....+.
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 334567888899999999998888 56666544334444544421 245688888889999987 211111
Q ss_pred HhCCChHHHHHhcc---------CCCHHHHHHHHHHHHHhcCCCc
Q 044999 377 ADAGAVPIMIELLH---------DESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 377 ~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
+......+.+.+. ..+++....++.++.+|...+.
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 1223445555553 1378899999999999986443
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.55 E-value=8.1 Score=30.67 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=57.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhccC------CCHHHHHHHHHHHHHhcCCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSYN--EADRVALADAGAVPIMIELLHD------ESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~ 411 (461)
++..|.+-+.++++.++..|+..|-.+..+ +..+..+.+...+..|++++.. .++.|+..+...+...+...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355688888889999999999988888883 4566677777788889988852 46899999999998886543
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.92 E-value=9.6 Score=31.87 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=55.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcCC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSED 410 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~ 410 (461)
++..|.+-+.++++.++..|+..|-.+.. .+..+..+.+...+..|.+++. ..++.++..+...+...+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 35568888889999999999998888888 4555667777677777877774 36789999999999888643
No 149
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.52 E-value=69 Score=33.52 Aligned_cols=179 Identities=9% Similarity=-0.029 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhh-CChHHHHHHHhcCCHHHHHHHHcC----CCHHHHHHHHHHHH--HhhcCc-h
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALA-LLREVRRVLICLGGLRYLVEAVSF----GSMVSRERACQAIG--LLAVTG-R 212 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~l~~l~~~l~~----~~~~~~~~a~~~L~--~l~~~~-~ 212 (461)
+..|+++..+.-+++|..|-.+|.... ..+..+..+ ++.+++.|+. .+.+-...|+.+|. .+...- .
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 556777778888999999999999888 344445443 5666666644 34444555555443 111000 0
Q ss_pred hHHHHHhcCChHHHHHhcccCCHHHHHHHHHHHHHHhcC---ccc---------------------------------hh
Q 044999 213 ARRLLVELGVIPGLVELFHIGDWTTKLVAGNTLGVVAAH---VEY---------------------------------IT 256 (461)
Q Consensus 213 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~---------------------------------~~ 256 (461)
+...+ ...++.|+.....+.+.++..+-.+...+... +.. +.
T Consensus 210 d~~~~--~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 210 DYKDI--GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp CHHHH--HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred ChHHH--HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11122 12466666666666666665555444444332 100 00
Q ss_pred hhhh--cCCHHHHHHHh-CCCC--hhHHHHHHHHHHHhccCcc--cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 044999 257 PVAE--AGAIPLYAELL-QGPD--STGKEISEDVFCILAVSEA--NANAIAEHLVRILREGDNEANAAAADVLWDLA 326 (461)
Q Consensus 257 ~~~~--~g~i~~L~~ll-~~~~--~~~~~~a~~~L~~l~~~~~--~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~ 326 (461)
...+ .+....+++.. .+.+ +.....++..|.++....+ ....++..+++.+.+++|.+|..|..++..+.
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 0000 02222334444 3346 7888888888766643332 34455578888889999999999998775443
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.02 E-value=15 Score=30.61 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhC--ChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALAL--LREVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~~ 209 (461)
+..|.+-+.+.++.++..|+.+|-.+.. .......+....++..|..++... +..++..++..+...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4557777889999999999999998884 455677777777888888887643 77899999888877653
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=62.05 E-value=53 Score=25.43 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=51.4
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHH-HHhcCCC---CCHHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINS-VLRLFPQ---SDDSFRTVLVKCLRVF 124 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~-L~~ll~~---~~~~~~~~~~~~l~~l 124 (461)
++..+.+-|++ +.++.+|..|+..|-.+..+.....+..+....++.. |++++.. ....|+..+...+...
T Consensus 54 a~ral~krl~~-----~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 54 ALRAVKKRIVG-----NKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 66777777763 2456788889888888887534677788888888887 7887742 3357777777777655
Q ss_pred h
Q 044999 125 V 125 (461)
Q Consensus 125 ~ 125 (461)
+
T Consensus 129 ~ 129 (157)
T 1elk_A 129 A 129 (157)
T ss_dssp H
T ss_pred H
Confidence 5
No 152
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=61.67 E-value=51 Score=25.13 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=59.9
Q ss_pred hhCCCCchhHHhhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC--CCHHH
Q 044999 325 LAGYKHSVPVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD--ESEEL 396 (461)
Q Consensus 325 l~~~~~~~~~l~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~ 396 (461)
.......+..+++.|++..+-.+|.. ++..+|...+.+|.++- -.++.+.+.|.-..+..+.++ ..++.
T Consensus 47 ~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~n 123 (145)
T 2xpp_A 47 ILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEV 123 (145)
T ss_dssp HHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHH
T ss_pred HHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHH
Confidence 33455678889999999999999973 35679999999888884 446788888766666555544 57888
Q ss_pred HHHHHHHHHHhc
Q 044999 397 RDNAAESLINFS 408 (461)
Q Consensus 397 ~~~a~~~L~~l~ 408 (461)
+..|-..+...+
T Consensus 124 k~la~~Li~~Ws 135 (145)
T 2xpp_A 124 RASAKALVQKWT 135 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
No 153
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=61.20 E-value=1.8e+02 Score=31.32 Aligned_cols=336 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCCcHHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc-CCCchhHHHh-hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHH
Q 044999 4 PDTNWEEAFNRFEQAVVSGSEALQVKALTKLARVS-KFAPQDILAA-TIPILARLLGENNFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 4 ~~~~~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la-~~~~~~~l~~-~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l 81 (461)
.|.......+.|.+++.. ++........+|++|. +++....++. ++..+ .+-+.+..-..+..|.+-
T Consensus 186 ~ds~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L----------~s~~~e~LP~lIkFLL~s 254 (1323)
T 3s4w_B 186 GDSQHANVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKL----------SSVRLEDFPVIVKFLLHS 254 (1323)
T ss_dssp CGGGHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHST----------TSSCTTHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHh----------ccCChhhhHHHHHHHHHh
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCC---ChHHHHH
Q 044999 82 ASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSC---NDGTRRY 158 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~ 158 (461)
+. .....+.+ ..+..-+++-....|.....+-..+.+...........=...+....+++.+++. .+.+.+.
T Consensus 255 ~t--~~~~~evI---~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eA 329 (1323)
T 3s4w_B 255 VT--DTTSLEVI---AELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEA 329 (1323)
T ss_dssp CS--STTHHHHH---HHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CC--HhhHHHHH---HHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHH
Q ss_pred HHHHHHHhhCChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCchhHHHHHh----------cCChHHHH
Q 044999 159 LLEILSALALLREVRRVLICLGGLRYLVEAV-SFGSMVSRERACQAIGLLAVTGRARRLLVE----------LGVIPGLV 227 (461)
Q Consensus 159 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~i~~L~ 227 (461)
-++.+.+.....+ ...+..++-++ -+.+...+..+-.++.+..........+.. ...++.++
T Consensus 330 wlK~I~~~~~~~~-------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL 402 (1323)
T 3s4w_B 330 WFKAIERIESAAE-------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSIL 402 (1323)
T ss_dssp HHHHHHHGGGSTT-------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHhCCCcccc-------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred Hhcc----cCCHHHHHHHHHHHHHHhcC--ccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhccCcccHHHHH-
Q 044999 228 ELFH----IGDWTTKLVAGNTLGVVAAH--VEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAVSEANANAIA- 300 (461)
Q Consensus 228 ~ll~----~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~- 300 (461)
.+.+ +.++.++.-+...-..+-.. ..+++.+ +..|+..+-+++..-...|+.+|..|+......-.-.
T Consensus 403 ~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeV-----l~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 403 LLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEV-----VGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Q ss_pred ---HHHHHHhccCCHHHHHHHHHHHHHhh-CCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 044999 301 ---EHLVRILREGDNEANAAAADVLWDLA-GYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLS 367 (461)
Q Consensus 301 ---~~l~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 367 (461)
..+++.+.+-++.-......+|+.++ ........-++....-.+.+.+.+.+...++..+..-..+.
T Consensus 478 ~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=58.81 E-value=20 Score=33.07 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhc-CCHHHHHHhhcC-------
Q 044999 279 KEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNS-GAIPILVNLLRG------- 350 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~ll~~------- 350 (461)
+..++..|+-+..++.....+...+-..+.+..+..+..++++++|+-.++.....+... .....+.+.+.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~ 322 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASA 322 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCH
T ss_pred ccHHHHHHHHHHcCCchHHHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhccc
Confidence 444666666555444433222232223344557888999999999999888754444433 234555655431
Q ss_pred -CCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc---------CCCHHHHHHHHHHHHHhcCCCc
Q 044999 351 -ENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH---------DESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 351 -~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 412 (461)
.+..++..++..+.|++. ....+. +......+.+++. ..+++....++.+|.+|...+.
T Consensus 323 ~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 323 KQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 234578888888999987 211110 1223445555554 2588999999999999986443
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.38 E-value=23 Score=29.40 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhCC--hHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q 044999 141 LEIVIDLLNSCNDGTRRYLLEILSALALL--REVRRVLICLGGLRYLVEAVSFG-SMVSRERACQAIGLLA 208 (461)
Q Consensus 141 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~a~~~L~~l~ 208 (461)
+..|.+-+.+.++.++..|+.+|-.+..+ ......+....++..|+.++.+. +..++..++..+..-+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44567777889999999999999998843 55667777777888888887644 6788888887776654
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=55.76 E-value=77 Score=33.16 Aligned_cols=175 Identities=11% Similarity=0.021 Sum_probs=100.8
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCchh-HHHHHhcCChHHHHHhccc----CCHHHHHHHHHHHH--HHh----
Q 044999 181 GLRYLVEAVSFGSMVSRERACQAIGLLAVTGRA-RRLLVELGVIPGLVELFHI----GDWTTKLVAGNTLG--VVA---- 249 (461)
Q Consensus 181 ~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~--~l~---- 249 (461)
.+..|+++-.+.-.++|..|-.+|......-.. +.. +++.+++.|+. .+.+-.+.|+.+|. .+.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 466688888888889999999999988777665 433 35666666643 34444555555443 111
Q ss_pred cCccchhhhhhcCCHHHHHHHhCCCChhHHHHHHHHHHHhcc---C------------------ccc-------------
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQGPDSTGKEISEDVFCILAV---S------------------EAN------------- 295 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~------------------~~~------------- 295 (461)
.+-.+.. ..++.|++....+.+.++..+..+...+.. . ++.
T Consensus 209 ~d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~ 283 (997)
T 1vsy_5 209 TDYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKK 283 (997)
T ss_dssp GCHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTT
T ss_pred cChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 1111111 235666666666666666655544433321 0 000
Q ss_pred --HHHHH-------HHHHHHh-ccCC--HHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 044999 296 --ANAIA-------EHLVRIL-REGD--NEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAI 363 (461)
Q Consensus 296 --~~~i~-------~~l~~ll-~~~~--~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L 363 (461)
+.... ..++++. ++.+ +.....++..+.++....+. .....++..+++.+.+.+|.++..+..++
T Consensus 284 ~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l 360 (997)
T 1vsy_5 284 KKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSL 360 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 00000 2333444 2346 77788888886666643221 12233566688888899999999998877
Q ss_pred HHhcC
Q 044999 364 AQLSY 368 (461)
Q Consensus 364 ~~l~~ 368 (461)
..+..
T Consensus 361 ~~il~ 365 (997)
T 1vsy_5 361 LSTCN 365 (997)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 55544
No 157
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=52.52 E-value=28 Score=31.39 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcC-CHHHHHHhhc--------
Q 044999 279 KEISEDVFCILAVSEANANAIAEHLVRILREGDNEANAAAADVLWDLAGYKHSVPVIRNSG-AIPILVNLLR-------- 349 (461)
Q Consensus 279 ~~~a~~~L~~l~~~~~~~~~i~~~l~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g-~i~~L~~ll~-------- 349 (461)
+..++..|+-+..++.....+...+-..+.+..+..+..++++++|+-.++.....+..+. ....+.+.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~ 259 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASA 259 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCH
T ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhccc
Confidence 3345555554444433322222222233345568888999999999998887544444322 2334444432
Q ss_pred CCCHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHhcc---------CCCHHHHHHHHHHHHHhcCCC
Q 044999 350 GENDEVREKVSGAIAQLSY-NEADRVALADAGAVPIMIELLH---------DESEELRDNAAESLINFSEDP 411 (461)
Q Consensus 350 ~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~ 411 (461)
..+..++..++..+.|++. ....+. +......+.+++. ..+++....++.+|.+|...+
T Consensus 260 ~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 260 KQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235588888888999987 211010 1223445666554 258899999999999998643
No 158
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.67 E-value=24 Score=30.08 Aligned_cols=90 Identities=8% Similarity=0.010 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCChHHHHHhcc--
Q 044999 156 RRYLLEILSALALLREVRRVLICLGGLRYLVE-AVSFGSMVSRERACQAIGLLAVTGR-ARRLLVELGVIPGLVELFH-- 231 (461)
Q Consensus 156 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~-~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~ll~-- 231 (461)
+..++..++-+..++... +.+..++. .+.+.++..+..+++++.|+-.++. .+..+.+......+++.+.
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 445666666555333321 12222222 2234577899999999999999888 4666654333444454432
Q ss_pred --c----CCHHHHHHHHHHHHHHhcC
Q 044999 232 --I----GDWTTKLVAGNTLGVVAAH 251 (461)
Q Consensus 232 --~----~~~~~~~~a~~~L~~l~~~ 251 (461)
+ .+..++..++..+.|++..
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~ 170 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSAL 170 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHH
Confidence 1 2456777888889999875
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.60 E-value=61 Score=25.09 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=52.4
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHhh--CChHHHHHHHhcCCHHH-HHHHHcC---CCHHHHHHHHHHHHHhhc
Q 044999 141 LEIVIDLLN-SCNDGTRRYLLEILSALA--LLREVRRVLICLGGLRY-LVEAVSF---GSMVSRERACQAIGLLAV 209 (461)
Q Consensus 141 i~~L~~ll~-~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~l~~-l~~~l~~---~~~~~~~~a~~~L~~l~~ 209 (461)
+..+.+-+. +.++.++..|+.+|-.+. -.+.....+.+..++.. |+.++.. .+..++..++..+..-+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 445777776 578899999999999888 34777888888888888 7888842 246888888888766543
No 160
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=49.48 E-value=1.7e+02 Score=27.44 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcCcc-chhhhhhcCCHHHHHHHh-CC-C----ChhHHHHHHHHHHHhccCcccHHHHH----HHHH
Q 044999 236 TTKLVAGNTLGVVAAHVE-YITPVAEAGAIPLYAELL-QG-P----DSTGKEISEDVFCILAVSEANANAIA----EHLV 304 (461)
Q Consensus 236 ~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~ll-~~-~----~~~~~~~a~~~L~~l~~~~~~~~~i~----~~l~ 304 (461)
+..+.+...|...+..+. .-..+ ++.+-+++ .+ . |++. .+..+..+...-.....+- +.+.
T Consensus 51 ~Lie~~~LnL~~~t~~~~~~~~~l-----l~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~ 122 (500)
T 3vld_A 51 TLLRKCSLNLVTVVSLPDMDVKPL-----LATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLV 122 (500)
T ss_dssp HHHHHHHHHHHHSCSCCSCCCHHH-----HHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHH
T ss_pred HHHHHHhhcchhcccCCcccHHHH-----HHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHH
Confidence 344455555555555544 33344 57777777 33 1 3444 3344444433222222222 8899
Q ss_pred HHhccCCHHHHHHHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHH---HHHHHHHHHHHhcCChhhHHHHHhCCC
Q 044999 305 RILREGDNEANAAAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDE---VREKVSGAIAQLSYNEADRVALADAGA 381 (461)
Q Consensus 305 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~ 381 (461)
.-|.++.+.+...|+.++. .+.-+..+...+++..|++++-+.+-. +.-..-.++..|+.++=.+.++.+. .
T Consensus 123 ~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~n-n 197 (500)
T 3vld_A 123 KALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDN-N 197 (500)
T ss_dssp HHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTT-T
T ss_pred HHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHH-h
Confidence 9999999999999999988 556677888899999999998765432 6666667788887777677788765 4
Q ss_pred hHHHHHhccCCCHHHHHHHHHHHHHh
Q 044999 382 VPIMIELLHDESEELRDNAAESLINF 407 (461)
Q Consensus 382 i~~L~~ll~~~~~~~~~~a~~~L~~l 407 (461)
.|.|..+=+..++-+...-...+.-+
T Consensus 198 l~lL~~vK~~~~~i~~sRLLdll~il 223 (500)
T 3vld_A 198 LPYLVSVKGRMETVSFVRLIDFLTIE 223 (500)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 67776666556766666666666555
No 161
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.76 E-value=87 Score=23.69 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=48.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHHHHHhccC----C--------CHHHHHHHHHHHH
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSY--NEADRVALADAGAVPIMIELLHD----E--------SEELRDNAAESLI 405 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~ll~~----~--------~~~~~~~a~~~L~ 405 (461)
+++.|.+-|.++++.++.+++.+|-.|+. ++..+..+.++- . .++.+.+ + ...||..|-.++.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~--~-~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS--V-AVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT--H-HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH--H-HHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 56678888999999999999999999998 667677776653 2 2333311 1 2557888888777
Q ss_pred HhcCCC
Q 044999 406 NFSEDP 411 (461)
Q Consensus 406 ~l~~~~ 411 (461)
.|..+.
T Consensus 127 ll~d~~ 132 (140)
T 1vdy_A 127 AIFSEE 132 (140)
T ss_dssp HHTCCS
T ss_pred HHhCcC
Confidence 665443
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.92 E-value=28 Score=28.88 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=53.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--hhhHHHHHhCCChHHHHHhcc-CCCHHHHHHHHHHHHHhcC
Q 044999 340 AIPILVNLLRGENDEVREKVSGAIAQLSYN--EADRVALADAGAVPIMIELLH-DESEELRDNAAESLINFSE 409 (461)
Q Consensus 340 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~ 409 (461)
++..|.+-+.++++.++..|+..|-.+..+ +..+..+.+...+..|+.++. ..++.++..+...+...+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 345577788889999999999999888883 445566666667788888774 4578999999888877763
No 163
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=42.30 E-value=1.2e+02 Score=23.73 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCchhHHhhcCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHhccC--CCHHHHH
Q 044999 327 GYKHSVPVIRNSGAIPILVNLLRG------ENDEVREKVSGAIAQLSYNEADRVALADAGAVPIMIELLHD--ESEELRD 398 (461)
Q Consensus 327 ~~~~~~~~l~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~ 398 (461)
.....+..+++.|++..+..+|.. ++..++...+.+|..|- -.++.+.+.|.-..+..+.++ ..++.+.
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP---VKTEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC---CCHHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC---CCHHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 445678888999999999999973 34678999999888884 445678887755555555544 5788888
Q ss_pred HHHHHHHHhcCC
Q 044999 399 NAAESLINFSED 410 (461)
Q Consensus 399 ~a~~~L~~l~~~ 410 (461)
.|-..+...++.
T Consensus 141 la~~Li~~WsRp 152 (170)
T 3nfq_A 141 LAEKLIAEWTRP 152 (170)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 888888876543
No 164
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=40.27 E-value=1.2e+02 Score=23.20 Aligned_cols=73 Identities=7% Similarity=0.174 Sum_probs=49.9
Q ss_pred hHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHhcCCchhHHHHHhcCCHHH-HHhcCCCC---CHHHHHHHHHHHHHH
Q 044999 49 TIPILARLLGENNFSGNLTRSIQQAAAYCLKQIASQADGALATEIGQSGVINS-VLRLFPQS---DDSFRTVLVKCLRVF 124 (461)
Q Consensus 49 ~i~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~-L~~ll~~~---~~~~~~~~~~~l~~l 124 (461)
++..+.+-|.. ++++.+|..|+..|-.+..+........+....++.. |+++++.. ...|+..+...+...
T Consensus 54 A~ral~KRl~~-----~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~W 128 (152)
T 3rru_A 54 AVKALKKRISK-----NYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTW 128 (152)
T ss_dssp HHHHHHHHHTT-----CCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 56667777763 2456677778888888777544667777777777764 77777642 346888888888777
Q ss_pred hc
Q 044999 125 VT 126 (461)
Q Consensus 125 ~~ 126 (461)
+.
T Consensus 129 a~ 130 (152)
T 3rru_A 129 SQ 130 (152)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 165
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.82 E-value=2.1e+02 Score=25.70 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCHHHHH-HHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhcc-
Q 044999 238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYA-ELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLVRILRE- 309 (461)
Q Consensus 238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~- 309 (461)
+-.++..++.+..++..... +..++ ..+.+..+..+..++++++|+-.++.....+. +.++..+.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~~~------l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHHH------HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 44566677777766443322 33333 33345577889999999999977777433333 234444421
Q ss_pred -------CCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc---------CCCHHHHHHHHHHHHHhcC-Chh
Q 044999 310 -------GDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR---------GENDEVREKVSGAIAQLSY-NEA 371 (461)
Q Consensus 310 -------~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~-~~~ 371 (461)
.+..++..++..+.|++.. ...+. .......+.+.+. ..+++..-.++.+|++|.. .+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1456888899999999853 10000 1223445666655 2477888899999999997 544
Q ss_pred h
Q 044999 372 D 372 (461)
Q Consensus 372 ~ 372 (461)
.
T Consensus 331 ~ 331 (362)
T 3l3f_X 331 L 331 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=33.26 E-value=3.1e+02 Score=25.74 Aligned_cols=372 Identities=15% Similarity=0.137 Sum_probs=193.0
Q ss_pred HHhHHHHHHHhhcCC-----HHHHHHHHHHHHhhc-CCCchhHHHhhHHHHHHhhccC-CCCCCCcHHHHHHHHHHHHHH
Q 044999 9 EEAFNRFEQAVVSGS-----EALQVKALTKLARVS-KFAPQDILAATIPILARLLGEN-NFSGNLTRSIQQAAAYCLKQI 81 (461)
Q Consensus 9 ~~~~~~l~~ll~~~~-----~~~~~~a~~~l~~la-~~~~~~~l~~~i~~l~~~l~~~-~~~~~~~~~~~~~a~~~L~~l 81 (461)
+..++.+...++++. ......+..-|...+ .+.. ...+.++.+-+.|..+ .+ .+-|++....-...+...
T Consensus 30 ~~ll~~L~t~~e~~~~p~~in~Lie~~~LnL~~~t~~~~~--~~~~ll~~Ik~iL~~~~~~-~~lD~~~Li~Ll~~il~~ 106 (500)
T 3vld_A 30 ENLLTQLENELNEDNLPEDINTLLRKCSLNLVTVVSLPDM--DVKPLLATIKRFLTSNVSY-DSLNYDYLLDVVDKLVPM 106 (500)
T ss_dssp HHHHHHHHHHHHTSSCCTTHHHHHHHHHHHHHHSCSCCSC--CCHHHHHHHHHHHHCSSCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCchhHHHHHHHhhcchhcccCCcc--cHHHHHHHHHHHHcCCccc-cccCHHHHHHHHHHHHhc
Confidence 344555555555433 355666666777776 3321 1123556666666331 11 223566644455555555
Q ss_pred HhcCCchhHHHHHhcCCHHHHHhcCCCCCHHHHHHHHHHHHHHhccChhhHHHHHHcCCHHHHHHHhcCCCh--H-HHHH
Q 044999 82 ASQADGALATEIGQSGVINSVLRLFPQSDDSFRTVLVKCLRVFVTFGNENRVIVARNGGLEIVIDLLNSCND--G-TRRY 158 (461)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~-~~~~ 158 (461)
+.. +.+.+.-.++.++..|.++++.+...++..+. ....+..++..+.+..+++++-..+. . +...
T Consensus 107 ~~F------d~VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~ 175 (500)
T 3vld_A 107 ADF------DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITA 175 (500)
T ss_dssp SCH------HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHH
T ss_pred CCH------HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHH
Confidence 542 34556667889999999998887777776665 23456788889999999998765543 2 4333
Q ss_pred HHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc---hhHHHHHhcCChHHHHHhcccCCH
Q 044999 159 LLEILSALALLREVRRVLICLGGLRYLVEAVSFGSMVSRERACQAIGLLAVTG---RARRLLVELGVIPGLVELFHIGDW 235 (461)
Q Consensus 159 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~i~~L~~ll~~~~~ 235 (461)
.=.++..++.++-.++.+.+. ..+.+..+=.+.++-+..+.+..+.-+...- +....+.--+ -..+.+.+. ++
T Consensus 176 IE~~~~~LssdeLirrril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~-~~Ei~k~~d--Di 251 (500)
T 3vld_A 176 IEKALERLSTDELIRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT-KEEILKSVE--DI 251 (500)
T ss_dssp HHHHHHHHTTSHHHHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC-HHHHHHHTT--SH
T ss_pred HHHHHHHcCchHHHHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeecc-HHHHHhhhc--ch
Confidence 335566666666677777754 6777777766677777777777776664442 2222211100 011112222 21
Q ss_pred HHHHH----HHHHHHHHhcCccchhhhhh--cCCHHHHHHHhCCC--ChhHHHHHHH----HHHHhccCcccH----HHH
Q 044999 236 TTKLV----AGNTLGVVAAHVEYITPVAE--AGAIPLYAELLQGP--DSTGKEISED----VFCILAVSEANA----NAI 299 (461)
Q Consensus 236 ~~~~~----a~~~L~~l~~~~~~~~~~~~--~g~i~~L~~ll~~~--~~~~~~~a~~----~L~~l~~~~~~~----~~i 299 (461)
-.-.. -...+..+.. +.+....+ ...++.+.++.... .++++..+.. .++.++.-++.. +.+
T Consensus 252 l~fI~ii~yYtkLl~~~~~--~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~d~e~~~Fk~l 329 (500)
T 3vld_A 252 LVFIELVNYYTKFLLEIRN--QDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDEYSLFKTM 329 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--cchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcccchhHHHHhc
Confidence 11111 1111111111 11111111 24577888887543 5666655444 444555433322 111
Q ss_pred H----------HHHHHHhccCCHHHHH-HHHHHHHHhhCCCCchhHHhhcCCHHHHHHhhcCCC-----------HHHH-
Q 044999 300 A----------EHLVRILREGDNEANA-AAADVLWDLAGYKHSVPVIRNSGAIPILVNLLRGEN-----------DEVR- 356 (461)
Q Consensus 300 ~----------~~l~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~-----------~~v~- 356 (461)
. +....+|+.-+|+... .-...+..+..- ...-++.+..+..+++ ..+.
T Consensus 330 d~~~l~i~~~~~~~~~fLS~iNP~yL~~~~~d~l~~~~~l--------~~s~l~Il~NLIs~~~~F~~ik~~lts~~Il~ 401 (500)
T 3vld_A 330 DKDSLKIGSEAKLITEWLELINPQYLVKYHKDVVENYFHV--------SGYSIGMLRNLSADEECFNAIRNKFSAEIVLR 401 (500)
T ss_dssp HHHTTCTTSSGGGHHHHHHHSCHHHHHHHCHHHHHHHCCC--------SGGGHHHHHHHTTSHHHHHTTGGGCCHHHHHT
T ss_pred cccceecCCcchhHHHHHHhcCHHHHHHHHHHHHHhcccc--------ChhHHHHHHHHhcCHHHHHHHHhccCHHHHHh
Confidence 1 5666677666665432 222333333311 1222333333333211 0010
Q ss_pred ---HHHHHHHHHhcCChhhHHHHHhCCChHHHHH-hccC------CCHHHHHHHHHHHHHhcCC
Q 044999 357 ---EKVSGAIAQLSYNEADRVALADAGAVPIMIE-LLHD------ESEELRDNAAESLINFSED 410 (461)
Q Consensus 357 ---~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-ll~~------~~~~~~~~a~~~L~~l~~~ 410 (461)
..-...|..++..+-..+.+... +|.++. ++.+ .++++...=..++.||...
T Consensus 402 LPy~eqm~LL~~lS~y~ys~~yLln~--LP~VmsnLi~~~~~~~I~e~Et~~Lr~~~leNLL~~ 463 (500)
T 3vld_A 402 LPYLEQMQVVETLTRYEYTSKFLLNE--MPKVMGSLIGDGSAGAIIDLETVHYRNSALRNLLDK 463 (500)
T ss_dssp SCHHHHHHHHHHHTTSHHHHHHHHHH--CHHHHHHHHCSSCGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCchhHHHHHhh--hhHHHHHHhcCCCcccccChHHHHHHHHHHHHHhhC
Confidence 12234566777766666666653 455544 3331 3677777777778888764
No 167
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=30.59 E-value=1.7e+02 Score=22.02 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=46.3
Q ss_pred HHHhHHHHHHHhhcCCHHHHHHHHHHHHhhc---CCCchhHHHhhHHHHHHhhccCCCCCCCc-------HHHHHHHHHH
Q 044999 8 WEEAFNRFEQAVVSGSEALQVKALTKLARVS---KFAPQDILAATIPILARLLGENNFSGNLT-------RSIQQAAAYC 77 (461)
Q Consensus 8 ~~~~~~~l~~ll~~~~~~~~~~a~~~l~~la---~~~~~~~l~~~i~~l~~~l~~~~~~~~~~-------~~~~~~a~~~ 77 (461)
+.+.++.|.+-+.+.++.++.+|++.|-.|+ ++.....+++-+. +++.+.. |.+.+| -..++..+.-
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~-~Ik~l~~--F~g~~dp~~G~d~g~~VR~~AkE 123 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV-AVRNLFH--YKGHPDPLKGDALNKAVRETAHE 123 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH-HHHTTTT--CCCCCCTTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH-HHHHHHh--cCCCCCcccccchhHHHHHHHHH
Confidence 5788899999999999999999999999999 3333344444222 2444432 222222 2344445566
Q ss_pred HHHHHh
Q 044999 78 LKQIAS 83 (461)
Q Consensus 78 L~~l~~ 83 (461)
|..+..
T Consensus 124 l~~ll~ 129 (140)
T 1vdy_A 124 TISAIF 129 (140)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 666655
No 168
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.94 E-value=2.3e+02 Score=22.84 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred CHHHHHHHHcCC------CHHHHHHHHHHHHHhhcCchh--HHHHHhcCChHHHHHhcc---cCCHHHHHHHHHHHHHHh
Q 044999 181 GLRYLVEAVSFG------SMVSRERACQAIGLLAVTGRA--RRLLVELGVIPGLVELFH---IGDWTTKLVAGNTLGVVA 249 (461)
Q Consensus 181 ~l~~l~~~l~~~------~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~ 249 (461)
.+|.++.++.++ +...-...++....|..++.. ...+.+ .+|.++.++- -+...+|+.|+..+..++
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~--LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ--ILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH--HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Q ss_pred cCccchhhhhhcCCHHHHHHHhCCC--ChhHHHHHHHHHHHh
Q 044999 250 AHVEYITPVAEAGAIPLYAELLQGP--DSTGKEISEDVFCIL 289 (461)
Q Consensus 250 ~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l 289 (461)
..-.....-....+...+.+.+.++ +...+.-|...|..+
T Consensus 119 ~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 119 DTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.91 E-value=3.4e+02 Score=24.92 Aligned_cols=129 Identities=13% Similarity=0.174 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcCccchhhhhhcCCHHHHH-HHhCCCChhHHHHHHHHHHHhccCcccHHHHH------HHHHHHhcc-
Q 044999 238 KLVAGNTLGVVAAHVEYITPVAEAGAIPLYA-ELLQGPDSTGKEISEDVFCILAVSEANANAIA------EHLVRILRE- 309 (461)
Q Consensus 238 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~i~------~~l~~ll~~- 309 (461)
+-.++..++.+..++..... +..++ ..+.+..+..+..++++++|+-.++.....+. +.++..+.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~------l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHHH------HHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 45577777777776443322 23333 33445578889999999999977777433333 445554421
Q ss_pred -------CCHHHHHHHHHHHHHhhCC-CCchhHHhhcCCHHHHHHhhc---------CCCHHHHHHHHHHHHHhcC-Chh
Q 044999 310 -------GDNEANAAAADVLWDLAGY-KHSVPVIRNSGAIPILVNLLR---------GENDEVREKVSGAIAQLSY-NEA 371 (461)
Q Consensus 310 -------~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~-~~~ 371 (461)
.+..++..++..+.|++.. ...+. .......+.+.+. ..+++..-.++.+|++|.. .+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1456888999999999853 10000 1223445555555 2477888899999999997 555
Q ss_pred hHHH
Q 044999 372 DRVA 375 (461)
Q Consensus 372 ~~~~ 375 (461)
.+..
T Consensus 394 ~~~~ 397 (425)
T 3pst_A 394 LRQF 397 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 170
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=23.90 E-value=2.5e+02 Score=23.28 Aligned_cols=76 Identities=8% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHhccCCHHHHHHHHH----HHHHhhCCCCchhHHhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHH
Q 044999 301 EHLVRILREGDNEANAAAAD----VLWDLAGYKHSVPVIRNSGAIPILVNLLRGENDEVREKVSGAIAQLSY-NEADRVA 375 (461)
Q Consensus 301 ~~l~~ll~~~~~~~~~~a~~----~L~~l~~~~~~~~~l~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 375 (461)
+.+...+.+++.-.+..+.. .+..+......... -...++.+...+.+++..++....++|..+.. +++....
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~--~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~ 188 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESK--ISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK 188 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHH--HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhh--HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34555666666666667766 44442111101111 11234455557888999999999999999999 8887766
Q ss_pred HHh
Q 044999 376 LAD 378 (461)
Q Consensus 376 ~~~ 378 (461)
+++
T Consensus 189 al~ 191 (235)
T 1t06_A 189 AVE 191 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 171
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=22.83 E-value=2.5e+02 Score=21.28 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=54.7
Q ss_pred hhhHHHHHHcCCHHHHHHHhcC------CChHHHHHHHHHHHHhhCChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHH
Q 044999 129 NENRVIVARNGGLEIVIDLLNS------CNDGTRRYLLEILSALALLREVRRVLICLGGLRYLVEAVSFG--SMVSRERA 200 (461)
Q Consensus 129 ~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a 200 (461)
...+..+.+.|++..+-..|.- ++..+|...+.+|.++-.+ ++.+.+.|.-..++.+-.++ .++.+..|
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~---~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH---KEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC---HHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 3567888999999998888753 3458999999999998644 55666776655555555555 56778877
Q ss_pred HHHHHHh
Q 044999 201 CQAIGLL 207 (461)
Q Consensus 201 ~~~L~~l 207 (461)
-..+..-
T Consensus 128 ~~Li~~W 134 (145)
T 2xpp_A 128 KALVQKW 134 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.55 E-value=1e+02 Score=23.68 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=49.7
Q ss_pred CHHHHHHhhcC-CCHHHHHHHHHHHHHhcC--ChhhHHHHHhCCChHH-HHHhccC---CCHHHHHHHHHHHHHhcCCCc
Q 044999 340 AIPILVNLLRG-ENDEVREKVSGAIAQLSY--NEADRVALADAGAVPI-MIELLHD---ESEELRDNAAESLINFSEDPL 412 (461)
Q Consensus 340 ~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~-L~~ll~~---~~~~~~~~a~~~L~~l~~~~~ 412 (461)
++..|.+-+.. .++.++..|+..|-.+.. .......+.+...+.. |++++.. ....|+..+...+...+....
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 34557766764 577778888887777777 4444555555555543 6666643 345799999999999986654
Q ss_pred c
Q 044999 413 Q 413 (461)
Q Consensus 413 ~ 413 (461)
+
T Consensus 134 ~ 134 (152)
T 3rru_A 134 G 134 (152)
T ss_dssp S
T ss_pred C
Confidence 3
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=21.01 E-value=2.4e+02 Score=23.04 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHH
Q 044999 342 PILVNLLRGENDEVREKVSGAIAQLSY-NEADRVALA 377 (461)
Q Consensus 342 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~ 377 (461)
+.+-.++.+++.-|+....++|..++. +++....++
T Consensus 162 ~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 162 KAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 344446778888899999999999999 777555554
Done!