Query 045003
Match_columns 93
No_of_seqs 105 out of 811
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zo1_I IF2, translation initia 99.1 2.6E-12 8.9E-17 104.7 -0.8 54 1-59 19-72 (501)
2 1g7s_A Translation initiation 99.1 2.7E-11 9.2E-16 99.9 2.5 55 1-58 20-90 (594)
3 3izy_P Translation initiation 99.0 2.6E-11 8.8E-16 99.6 -1.7 54 1-58 19-72 (537)
4 2lkc_A Translation initiation 98.1 1.4E-06 4.9E-11 56.1 3.4 49 1-51 23-71 (178)
5 1wb1_A Translation elongation 98.0 1.3E-06 4.5E-11 69.5 1.8 48 1-50 34-88 (482)
6 1kk1_A EIF2gamma; initiation o 97.9 3.2E-06 1.1E-10 64.8 2.1 50 1-50 25-98 (410)
7 1s0u_A EIF-2-gamma, translatio 97.9 4E-06 1.4E-10 64.4 2.2 50 1-50 23-96 (408)
8 2elf_A Protein translation elo 97.8 4E-06 1.4E-10 64.8 0.8 45 16-64 43-92 (370)
9 1r5b_A Eukaryotic peptide chai 97.8 6.9E-06 2.4E-10 64.8 2.1 33 16-50 104-136 (467)
10 3vqt_A RF-3, peptide chain rel 97.8 1.2E-05 4.1E-10 65.5 3.3 33 16-50 83-115 (548)
11 3j2k_7 ERF3, eukaryotic polype 97.7 1.5E-05 5.1E-10 62.5 2.7 32 17-50 79-110 (439)
12 3p26_A Elongation factor 1 alp 97.7 2.3E-05 7.8E-10 61.7 3.7 31 18-50 96-126 (483)
13 3j25_A Tetracycline resistance 97.7 4.5E-06 1.5E-10 68.7 -0.7 31 18-50 52-82 (638)
14 1zun_B Sulfate adenylate trans 97.6 2E-05 6.7E-10 61.1 2.4 32 17-50 88-119 (434)
15 1g16_A RAS-related protein SEC 97.6 9.3E-05 3.2E-09 46.9 4.4 52 1-52 18-69 (170)
16 1d2e_A Elongation factor TU (E 97.5 3.9E-05 1.3E-09 58.8 2.5 33 16-50 49-81 (397)
17 3clv_A RAB5 protein, putative; 97.5 0.00013 4.5E-09 46.9 4.5 17 35-51 93-109 (208)
18 1f60_A Elongation factor EEF1A 97.5 3.7E-05 1.3E-09 60.5 2.0 32 17-50 69-100 (458)
19 2c78_A Elongation factor TU-A; 97.5 4.9E-05 1.7E-09 58.1 2.5 33 16-50 58-90 (405)
20 3tw8_B RAS-related protein RAB 97.4 0.00012 4.1E-09 46.8 3.8 52 1-52 24-75 (181)
21 1vg8_A RAS-related protein RAB 97.4 0.00015 5.2E-09 47.9 4.3 51 1-51 23-73 (207)
22 2efe_B Small GTP-binding prote 97.4 0.00016 5.4E-09 46.5 4.1 51 1-51 27-77 (181)
23 3cb4_D GTP-binding protein LEP 97.4 7.6E-05 2.6E-09 61.9 3.2 35 16-50 49-86 (599)
24 3izq_1 HBS1P, elongation facto 97.4 5.8E-05 2E-09 62.2 2.0 32 17-50 229-260 (611)
25 1jny_A EF-1-alpha, elongation 97.4 5.7E-05 1.9E-09 58.7 1.8 33 16-50 67-99 (435)
26 3mca_A HBS1, elongation factor 97.4 1.3E-05 4.3E-10 65.7 -2.0 33 16-50 238-270 (592)
27 2bcg_Y Protein YP2, GTP-bindin 97.4 0.00023 7.8E-09 47.5 4.5 51 1-51 23-73 (206)
28 3def_A T7I23.11 protein; chlor 97.3 0.00016 5.5E-09 51.8 3.8 48 1-50 51-99 (262)
29 3cph_A RAS-related protein SEC 97.3 0.00024 8.4E-09 47.1 4.4 51 1-51 35-85 (213)
30 2y8e_A RAB-protein 6, GH09086P 97.3 0.00021 7.1E-09 45.6 3.8 51 1-51 29-79 (179)
31 1z2a_A RAS-related protein RAB 97.3 0.00029 9.9E-09 44.5 4.3 51 1-51 20-70 (168)
32 2rdo_7 EF-G, elongation factor 97.3 0.00016 5.6E-09 60.3 4.0 35 16-50 58-97 (704)
33 4fn5_A EF-G 1, elongation fact 97.3 0.00011 3.8E-09 60.9 2.9 35 16-50 61-100 (709)
34 1z08_A RAS-related protein RAB 97.3 0.00021 7.2E-09 45.3 3.5 50 1-50 21-70 (170)
35 1ek0_A Protein (GTP-binding pr 97.3 0.00027 9.2E-09 44.5 4.0 50 2-51 19-68 (170)
36 3tkl_A RAS-related protein RAB 97.3 0.00032 1.1E-08 45.8 4.2 52 1-52 31-82 (196)
37 1r2q_A RAS-related protein RAB 97.2 0.00031 1E-08 44.3 4.0 49 2-50 22-70 (170)
38 2bme_A RAB4A, RAS-related prot 97.2 0.0002 6.9E-09 46.4 3.1 50 1-50 25-74 (186)
39 2a5j_A RAS-related protein RAB 97.2 0.00031 1.1E-08 46.5 3.8 51 1-51 36-86 (191)
40 1z0f_A RAB14, member RAS oncog 97.2 0.00026 8.8E-09 45.1 3.2 50 1-50 30-79 (179)
41 1x3s_A RAS-related protein RAB 97.2 0.00044 1.5E-08 44.9 4.3 51 2-52 31-81 (195)
42 1z0j_A RAB-22, RAS-related pro 97.1 0.00051 1.7E-08 43.4 4.0 48 2-51 22-71 (170)
43 2gf9_A RAS-related protein RAB 97.1 0.00069 2.4E-08 44.5 4.8 50 2-51 38-87 (189)
44 2ywe_A GTP-binding protein LEP 97.1 0.00021 7.1E-09 59.5 2.5 34 17-50 52-88 (600)
45 3o47_A ADP-ribosylation factor 97.1 0.0003 1E-08 52.8 3.0 47 1-52 180-226 (329)
46 1dar_A EF-G, elongation factor 97.1 0.00019 6.5E-09 59.7 2.0 33 16-50 60-92 (691)
47 2fu5_C RAS-related protein RAB 97.0 0.00018 6.1E-09 46.7 1.4 50 2-51 24-73 (183)
48 1ky3_A GTP-binding protein YPT 97.0 0.00042 1.4E-08 44.3 3.1 50 1-50 23-73 (182)
49 1z06_A RAS-related protein RAB 97.0 0.00053 1.8E-08 45.1 3.6 49 1-49 35-83 (189)
50 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00053 1.8E-08 43.9 3.5 49 2-50 23-71 (177)
51 2oil_A CATX-8, RAS-related pro 97.0 0.00076 2.6E-08 44.3 4.1 51 1-51 40-90 (193)
52 2fn4_A P23, RAS-related protei 97.0 0.00085 2.9E-08 42.8 4.1 50 1-51 24-73 (181)
53 3t5g_A GTP-binding protein RHE 97.0 0.0012 4.2E-08 42.6 4.8 50 2-52 22-71 (181)
54 3cpj_B GTP-binding protein YPT 96.9 0.0008 2.7E-08 46.0 4.0 51 2-52 29-79 (223)
55 3qq5_A Small GTP-binding prote 96.9 0.00045 1.5E-08 54.9 3.0 50 1-51 49-99 (423)
56 3tr5_A RF-3, peptide chain rel 96.9 0.00047 1.6E-08 56.0 3.1 32 17-50 66-97 (528)
57 2o52_A RAS-related protein RAB 96.9 0.00044 1.5E-08 46.5 2.4 50 2-51 41-90 (200)
58 1mh1_A RAC1; GTP-binding, GTPa 96.9 0.0017 5.9E-08 41.7 5.0 50 2-52 21-70 (186)
59 2g6b_A RAS-related protein RAB 96.9 0.00095 3.3E-08 42.8 3.6 50 1-50 25-75 (180)
60 3reg_A RHO-like small GTPase; 96.8 0.0014 4.9E-08 43.2 4.5 51 2-53 39-89 (194)
61 2h5e_A Peptide chain release f 96.8 0.00059 2E-08 55.3 3.1 33 16-50 65-97 (529)
62 2fg5_A RAB-22B, RAS-related pr 96.8 0.0013 4.3E-08 43.7 4.1 49 1-51 38-88 (192)
63 3kkq_A RAS-related protein M-R 96.8 0.0015 5.1E-08 42.3 4.3 50 2-52 34-83 (183)
64 2xtp_A GTPase IMAP family memb 96.8 0.0016 5.3E-08 45.8 4.7 47 1-49 37-85 (260)
65 1zbd_A Rabphilin-3A; G protein 96.8 0.00086 2.9E-08 44.4 3.1 49 2-50 24-72 (203)
66 1kao_A RAP2A; GTP-binding prot 96.7 0.00092 3.2E-08 41.8 2.8 48 2-50 19-66 (167)
67 2gco_A H9, RHO-related GTP-bin 96.7 0.002 7E-08 43.1 4.7 52 1-53 40-91 (201)
68 3lxx_A GTPase IMAP family memb 96.7 0.00072 2.5E-08 47.1 2.6 44 1-46 44-89 (239)
69 1c1y_A RAS-related protein RAP 96.7 0.0013 4.3E-08 41.4 3.4 49 2-51 19-67 (167)
70 2ew1_A RAS-related protein RAB 96.7 0.001 3.6E-08 45.5 3.2 50 1-50 41-90 (201)
71 3l0i_B RAS-related protein RAB 96.7 0.00047 1.6E-08 46.0 1.4 50 2-51 49-98 (199)
72 3bc1_A RAS-related protein RAB 96.7 0.0012 4.2E-08 42.3 3.2 16 35-50 70-85 (195)
73 2atx_A Small GTP binding prote 96.7 0.0024 8.3E-08 41.9 4.6 50 1-51 33-82 (194)
74 2il1_A RAB12; G-protein, GDP, 96.7 0.00051 1.7E-08 45.8 1.3 49 2-50 42-90 (192)
75 2hxs_A RAB-26, RAS-related pro 96.7 0.00068 2.3E-08 43.4 1.8 50 2-51 22-72 (178)
76 3oes_A GTPase rhebl1; small GT 96.7 0.0023 8E-08 42.7 4.5 49 2-51 40-88 (201)
77 1upt_A ARL1, ADP-ribosylation 96.7 0.0024 8.3E-08 40.4 4.3 46 1-51 22-67 (171)
78 2xex_A Elongation factor G; GT 96.6 0.00076 2.6E-08 56.1 2.5 33 16-50 58-90 (693)
79 4dsu_A GTPase KRAS, isoform 2B 96.6 0.002 6.9E-08 41.4 4.0 51 1-52 19-69 (189)
80 1r8s_A ADP-ribosylation factor 96.6 0.0017 5.7E-08 41.0 3.5 44 2-50 16-59 (164)
81 2ce2_X GTPase HRAS; signaling 96.6 0.0015 5E-08 40.6 3.2 48 2-50 19-66 (166)
82 2j0v_A RAC-like GTP-binding pr 96.6 0.0026 8.9E-08 42.5 4.5 25 28-52 50-74 (212)
83 2hup_A RAS-related protein RAB 96.6 0.0011 3.8E-08 44.7 2.6 49 2-50 45-93 (201)
84 2yc2_C IFT27, small RAB-relate 96.6 0.00063 2.2E-08 44.6 1.4 29 22-50 58-88 (208)
85 1u8z_A RAS-related protein RAL 96.6 0.0013 4.5E-08 41.1 2.7 49 1-50 19-67 (168)
86 3avx_A Elongation factor TS, e 96.6 0.00072 2.5E-08 61.8 2.0 33 16-50 342-374 (1289)
87 2f7s_A C25KG, RAS-related prot 96.5 0.00072 2.5E-08 45.4 1.3 49 2-50 41-99 (217)
88 1h65_A Chloroplast outer envel 96.5 0.0025 8.5E-08 45.6 4.0 48 1-50 54-102 (270)
89 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0045 1.5E-07 40.6 4.9 25 28-52 48-72 (184)
90 2p5s_A RAS and EF-hand domain 96.4 0.0011 3.7E-08 44.2 1.8 24 27-50 69-92 (199)
91 4bas_A ADP-ribosylation factor 96.4 0.0026 8.9E-08 41.5 3.5 36 32-67 60-98 (199)
92 2fv8_A H6, RHO-related GTP-bin 96.4 0.0033 1.1E-07 42.3 3.9 50 2-52 41-90 (207)
93 2a9k_A RAS-related protein RAL 96.4 0.0022 7.5E-08 41.0 2.8 48 2-50 34-81 (187)
94 2bov_A RAla, RAS-related prote 96.4 0.0022 7.4E-08 42.1 2.8 49 1-50 29-77 (206)
95 2erx_A GTP-binding protein DI- 96.2 0.003 1E-07 39.7 2.9 17 34-50 50-66 (172)
96 3con_A GTPase NRAS; structural 96.2 0.0046 1.6E-07 40.3 3.8 48 2-50 37-84 (190)
97 3bwd_D RAC-like GTP-binding pr 96.2 0.0028 9.6E-08 40.6 2.7 19 34-52 55-73 (182)
98 4gzl_A RAS-related C3 botulinu 96.2 0.0062 2.1E-07 41.1 4.5 50 2-52 46-95 (204)
99 2fh5_B SR-beta, signal recogni 96.2 0.0027 9.3E-08 42.4 2.7 63 2-67 23-90 (214)
100 2dyk_A GTP-binding protein; GT 96.2 0.0025 8.5E-08 40.0 2.3 46 1-48 16-62 (161)
101 1ksh_A ARF-like protein 2; sma 96.1 0.0048 1.7E-07 40.1 3.6 23 27-51 56-78 (186)
102 3i8s_A Ferrous iron transport 96.1 0.0053 1.8E-07 44.6 4.1 48 1-50 18-65 (274)
103 2h57_A ADP-ribosylation factor 96.1 0.0065 2.2E-07 39.9 4.2 19 33-51 65-83 (190)
104 2x77_A ADP-ribosylation factor 96.1 0.0026 9E-08 41.6 2.1 23 27-51 60-82 (189)
105 3a1s_A Iron(II) transport prot 96.1 0.0053 1.8E-07 44.5 3.9 48 1-50 20-67 (258)
106 1n0u_A EF-2, elongation factor 96.0 0.0029 1E-07 53.9 2.8 50 17-66 66-132 (842)
107 3dz8_A RAS-related protein RAB 96.0 0.0011 3.7E-08 43.8 0.0 24 27-50 64-87 (191)
108 1ega_A Protein (GTP-binding pr 96.0 0.0066 2.2E-07 44.9 4.2 44 1-46 23-67 (301)
109 1gwn_A RHO-related GTP-binding 96.0 0.0094 3.2E-07 40.7 4.7 50 2-52 44-93 (205)
110 2dy1_A Elongation factor G; tr 95.9 0.0041 1.4E-07 51.4 3.1 32 17-50 58-89 (665)
111 2b6h_A ADP-ribosylation factor 95.9 0.0045 1.5E-07 41.4 2.8 19 33-51 71-89 (192)
112 2q3h_A RAS homolog gene family 95.9 0.0086 2.9E-07 39.5 4.1 18 35-52 68-85 (201)
113 3llu_A RAS-related GTP-binding 95.9 0.012 4.1E-07 39.1 4.8 49 2-51 36-85 (196)
114 2gf0_A GTP-binding protein DI- 95.9 0.0049 1.7E-07 40.2 2.7 17 34-50 55-71 (199)
115 3iby_A Ferrous iron transport 95.9 0.0065 2.2E-07 44.1 3.6 48 1-50 16-63 (256)
116 1zj6_A ADP-ribosylation factor 95.9 0.0074 2.5E-07 39.5 3.5 25 25-51 52-76 (187)
117 2j1l_A RHO-related GTP-binding 95.8 0.0061 2.1E-07 41.4 3.2 24 28-51 75-98 (214)
118 3sjy_A Translation initiation 95.8 0.003 1E-07 48.3 1.8 16 35-50 75-90 (403)
119 3q3j_B RHO-related GTP-binding 95.8 0.014 4.8E-07 39.8 4.7 51 2-53 43-93 (214)
120 1zd9_A ADP-ribosylation factor 95.7 0.0074 2.5E-07 39.8 3.1 47 1-51 37-83 (188)
121 3iev_A GTP-binding protein ERA 95.6 0.0085 2.9E-07 44.3 3.5 48 1-49 25-73 (308)
122 2h17_A ADP-ribosylation factor 95.6 0.012 4.1E-07 38.4 3.8 24 26-51 58-81 (181)
123 4djt_A GTP-binding nuclear pro 95.6 0.0078 2.7E-07 40.3 2.9 18 35-52 61-78 (218)
124 3k53_A Ferrous iron transport 95.6 0.0078 2.7E-07 43.0 2.9 47 2-50 19-65 (271)
125 2hjg_A GTP-binding protein ENG 95.5 0.0022 7.5E-08 49.6 -0.0 43 1-45 190-233 (436)
126 3q85_A GTP-binding protein REM 95.5 0.0068 2.3E-07 38.4 2.2 25 26-50 42-66 (169)
127 2wkq_A NPH1-1, RAS-related C3 95.5 0.019 6.4E-07 40.6 4.7 62 2-64 171-235 (332)
128 2qu8_A Putative nucleolar GTP- 95.5 0.0086 2.9E-07 41.0 2.8 44 1-46 44-87 (228)
129 2wjg_A FEOB, ferrous iron tran 95.4 0.0098 3.3E-07 38.5 2.9 46 2-49 23-68 (188)
130 1f6b_A SAR1; gtpases, N-termin 95.4 0.013 4.3E-07 39.5 3.5 24 26-51 62-85 (198)
131 1m2o_B GTP-binding protein SAR 95.4 0.028 9.5E-07 37.4 5.1 23 27-51 61-83 (190)
132 3lxw_A GTPase IMAP family memb 95.3 0.012 4.1E-07 42.0 3.3 43 1-45 36-80 (247)
133 3th5_A RAS-related C3 botulinu 94.3 0.0031 1.1E-07 42.0 0.0 18 34-51 77-94 (204)
134 4dhe_A Probable GTP-binding pr 95.2 0.0092 3.2E-07 39.9 2.2 45 1-46 44-90 (223)
135 2wji_A Ferrous iron transport 95.2 0.017 5.8E-07 37.4 3.3 46 2-49 19-64 (165)
136 3c5c_A RAS-like protein 12; GD 95.1 0.028 9.6E-07 37.2 4.4 48 2-50 37-84 (187)
137 1moz_A ARL1, ADP-ribosylation 95.1 0.011 3.8E-07 38.0 2.2 19 33-51 60-78 (183)
138 3gj0_A GTP-binding nuclear pro 95.0 0.01 3.6E-07 40.0 2.0 20 33-52 62-81 (221)
139 3q72_A GTP-binding protein RAD 95.0 0.015 5.1E-07 36.7 2.6 25 27-51 41-65 (166)
140 3t1o_A Gliding protein MGLA; G 94.8 0.013 4.5E-07 37.7 2.0 19 34-52 73-91 (198)
141 3geh_A MNME, tRNA modification 94.7 0.0074 2.5E-07 48.2 0.7 46 1-48 239-285 (462)
142 2nzj_A GTP-binding protein REM 94.6 0.019 6.3E-07 36.4 2.3 21 28-48 45-65 (175)
143 1wf3_A GTP-binding protein; GT 94.4 0.031 1.1E-06 41.6 3.5 45 1-47 22-67 (301)
144 3gee_A MNME, tRNA modification 94.3 0.019 6.4E-07 46.0 2.3 47 1-49 248-295 (476)
145 3lvq_E ARF-GAP with SH3 domain 94.3 0.071 2.4E-06 41.1 5.4 45 2-51 338-382 (497)
146 4dcu_A GTP-binding protein ENG 94.3 0.012 4.2E-07 45.6 1.1 48 1-50 210-268 (456)
147 2cxx_A Probable GTP-binding pr 94.2 0.012 4.1E-07 37.9 0.8 39 1-45 16-54 (190)
148 1fzq_A ADP-ribosylation factor 94.0 0.036 1.2E-06 36.5 2.8 18 33-50 58-75 (181)
149 2atv_A RERG, RAS-like estrogen 94.0 0.042 1.4E-06 36.2 3.1 45 2-47 44-88 (196)
150 2ged_A SR-beta, signal recogni 93.6 0.032 1.1E-06 36.3 2.0 34 33-66 89-129 (193)
151 3t5d_A Septin-7; GTP-binding p 93.6 0.034 1.2E-06 39.9 2.2 48 1-48 23-78 (274)
152 1xzp_A Probable tRNA modificat 93.4 0.066 2.3E-06 43.0 3.9 47 1-49 258-306 (482)
153 2gj8_A MNME, tRNA modification 93.0 0.13 4.5E-06 33.7 4.3 47 1-49 19-66 (172)
154 4dkx_A RAS-related protein RAB 93.0 0.085 2.9E-06 37.3 3.6 28 34-61 61-88 (216)
155 3r7w_A Gtpase1, GTP-binding pr 92.9 0.092 3.2E-06 38.6 3.7 32 16-48 34-65 (307)
156 3cbq_A GTP-binding protein REM 92.7 0.041 1.4E-06 37.0 1.4 32 18-49 55-86 (195)
157 2f9l_A RAB11B, member RAS onco 92.5 0.15 5.1E-06 33.8 4.1 25 27-51 46-70 (199)
158 1svi_A GTP-binding protein YSX 92.2 0.059 2E-06 35.0 1.7 38 2-44 39-78 (195)
159 3dpu_A RAB family protein; roc 92.1 0.051 1.7E-06 42.9 1.6 19 34-52 97-115 (535)
160 2iwr_A Centaurin gamma 1; ANK 92.1 0.14 4.7E-06 32.7 3.3 34 28-64 47-81 (178)
161 3pqc_A Probable GTP-binding pr 91.6 0.12 4.3E-06 33.0 2.7 38 2-44 39-77 (195)
162 1jwy_B Dynamin A GTPase domain 91.2 0.11 3.9E-06 36.9 2.4 30 17-47 114-143 (315)
163 2zej_A Dardarin, leucine-rich 90.8 0.11 3.7E-06 34.1 1.9 26 33-58 54-79 (184)
164 1nrj_B SR-beta, signal recogni 90.8 0.089 3E-06 35.1 1.5 33 34-66 54-93 (218)
165 3ihw_A Centg3; RAS, centaurin, 89.7 0.51 1.7E-05 31.1 4.5 23 27-49 59-81 (184)
166 1mky_A Probable GTP-binding pr 89.5 0.18 6.1E-06 38.9 2.4 44 2-47 17-61 (439)
167 2hjg_A GTP-binding protein ENG 89.3 0.044 1.5E-06 42.3 -1.1 43 2-46 19-62 (436)
168 3b1v_A Ferrous iron uptake tra 89.3 0.14 4.8E-06 37.6 1.6 45 2-49 19-63 (272)
169 1puj_A YLQF, conserved hypothe 88.3 0.26 9E-06 36.4 2.5 41 1-46 135-176 (282)
170 1f5n_A Interferon-induced guan 86.8 0.48 1.6E-05 39.6 3.5 46 1-47 53-103 (592)
171 4dcu_A GTP-binding protein ENG 86.4 0.075 2.6E-06 41.2 -1.4 25 18-44 56-80 (456)
172 1oix_A RAS-related protein RAB 86.1 0.94 3.2E-05 30.0 4.1 27 27-53 70-96 (191)
173 2e87_A Hypothetical protein PH 85.9 0.45 1.5E-05 35.6 2.6 45 2-48 183-227 (357)
174 2qtf_A Protein HFLX, GTP-bindi 85.8 0.39 1.3E-05 36.9 2.3 42 2-45 195-236 (364)
175 2qag_A Septin-2, protein NEDD5 82.3 0.47 1.6E-05 36.0 1.4 16 36-51 96-118 (361)
176 2qpt_A EH domain-containing pr 81.5 0.65 2.2E-05 37.6 2.0 13 35-47 154-166 (550)
177 2aka_B Dynamin-1; fusion prote 81.2 1.1 3.9E-05 31.3 3.0 14 33-46 123-136 (299)
178 3ec1_A YQEH GTPase; atnos1, at 80.4 0.58 2E-05 35.7 1.3 42 2-48 178-225 (369)
179 4a9a_A Ribosome-interacting GT 79.4 1.2 4.1E-05 35.0 2.8 43 1-45 87-129 (376)
180 3t34_A Dynamin-related protein 78.8 1.7 5.8E-05 32.2 3.4 31 17-48 119-149 (360)
181 1lnz_A SPO0B-associated GTP-bi 76.9 0.5 1.7E-05 36.2 -0.0 66 2-68 174-249 (342)
182 2p67_A LAO/AO transport system 76.8 0.68 2.3E-05 34.6 0.7 16 33-48 147-162 (341)
183 3cnl_A YLQF, putative uncharac 75.1 1.1 3.7E-05 32.7 1.4 43 1-48 114-157 (262)
184 2ohf_A Protein OLA1, GTP-bindi 74.3 2.5 8.4E-05 33.6 3.4 48 2-49 38-100 (396)
185 2x2e_A Dynamin-1; nitration, h 73.8 2.7 9.2E-05 31.3 3.3 28 17-45 113-140 (353)
186 3h2y_A GTPase family protein; 73.8 0.74 2.5E-05 35.2 0.2 31 14-49 195-225 (368)
187 1jal_A YCHF protein; nucleotid 72.5 1.5 5.3E-05 34.3 1.8 15 35-49 66-80 (363)
188 1mky_A Probable GTP-binding pr 72.4 2.1 7.3E-05 32.8 2.5 43 2-46 196-239 (439)
189 1vdm_A Purine phosphoribosyltr 71.5 2.3 7.9E-05 27.8 2.2 48 33-80 82-148 (153)
190 2cjw_A GTP-binding protein GEM 67.4 4.7 0.00016 26.6 3.1 21 27-47 48-68 (192)
191 3zvr_A Dynamin-1; hydrolase, D 66.9 3.4 0.00012 35.7 2.9 28 17-45 133-160 (772)
192 1pui_A ENGB, probable GTP-bind 65.3 2.8 9.6E-05 27.4 1.6 26 16-46 58-83 (210)
193 2j69_A Bacterial dynamin-like 59.6 2.8 9.5E-05 34.9 1.0 13 35-47 174-186 (695)
194 1cip_A Protein (guanine nucleo 56.3 10 0.00035 29.0 3.6 23 26-50 186-208 (353)
195 1wxq_A GTP-binding protein; st 56.1 6.2 0.00021 30.6 2.4 14 35-48 71-84 (397)
196 1zcb_A G alpha I/13; GTP-bindi 52.8 7.8 0.00027 29.8 2.4 23 26-50 194-216 (362)
197 1yrb_A ATP(GTP)binding protein 51.6 4.9 0.00017 27.4 1.0 14 35-48 109-122 (262)
198 2g3y_A GTP-binding protein GEM 50.3 7.2 0.00025 27.0 1.7 20 28-47 80-99 (211)
199 3r7w_B Gtpase2, GTP-binding pr 48.9 9.1 0.00031 29.8 2.3 17 33-49 44-60 (331)
200 3q5d_A Atlastin-1; G protein, 45.7 12 0.00041 30.1 2.6 11 35-45 140-150 (447)
201 1z56_A Ligase interacting fact 39.6 6.2 0.00021 30.7 0.0 27 12-39 129-155 (246)
202 1azs_C GS-alpha; complex (lyas 39.6 26 0.00089 27.6 3.6 24 26-51 210-233 (402)
203 2xtz_A Guanine nucleotide-bind 38.7 23 0.0008 27.1 3.1 18 34-51 182-199 (354)
204 4fid_A G protein alpha subunit 37.4 23 0.00077 27.4 2.9 28 23-50 149-176 (340)
205 3p32_A Probable GTPase RV1496/ 37.4 12 0.0004 28.0 1.2 12 33-44 170-181 (355)
206 3ohm_A Guanine nucleotide-bind 36.4 23 0.00077 27.1 2.7 31 33-63 165-198 (327)
207 1xiw_A T-cell surface glycopro 35.4 20 0.00067 24.3 2.0 17 13-31 4-20 (105)
208 2qm8_A GTPase/ATPase; G protei 34.8 13 0.00046 27.8 1.2 13 33-45 146-158 (337)
209 1jjg_A M156R; beta barrel, S1 34.7 23 0.00077 24.4 2.2 33 13-49 29-61 (102)
210 2zo4_A Metallo-beta-lactamase 34.2 16 0.00055 25.7 1.5 14 34-47 160-173 (317)
211 2yl6_A Beta-N-acetylhexosamini 33.1 9.7 0.00033 30.1 0.2 12 37-48 109-120 (434)
212 1yht_A DSPB; beta barrel, hydr 32.6 10 0.00034 29.4 0.2 12 37-48 112-123 (367)
213 2yl5_A Beta-N-acetylhexosamini 31.5 11 0.00037 30.0 0.2 11 38-48 113-123 (442)
214 2j37_W Signal recognition part 31.3 16 0.00056 29.6 1.2 15 33-47 182-196 (504)
215 1t5r_A LUKS-PV; BI-component l 30.1 14 0.0005 28.8 0.7 34 10-44 19-52 (284)
216 1j8m_F SRP54, signal recogniti 29.7 22 0.00076 26.3 1.6 15 33-47 179-193 (297)
217 3n6r_B Propionyl-COA carboxyla 28.8 28 0.00094 29.0 2.2 51 33-83 373-450 (531)
218 2cfu_A SDSA1; SDS-hydrolase, l 28.7 30 0.001 28.6 2.4 14 34-47 268-281 (658)
219 2wsm_A Hydrogenase expression/ 27.8 22 0.00076 23.4 1.2 11 34-44 108-118 (221)
220 2gjx_A Beta-hexosaminidase alp 27.0 16 0.00053 29.7 0.4 10 39-48 234-243 (507)
221 2dby_A GTP-binding protein; GD 26.2 31 0.0011 26.6 1.9 16 34-49 68-83 (368)
222 3adr_A Putative uncharacterize 24.9 35 0.0012 23.1 1.8 14 34-47 137-150 (261)
223 2r8r_A Sensor protein; KDPD, P 24.7 38 0.0013 25.1 2.1 13 34-46 84-96 (228)
224 1ls1_A Signal recognition part 24.3 31 0.0011 25.3 1.6 15 33-47 179-193 (295)
225 1now_A Beta-hexosaminidase bet 24.2 17 0.00059 29.5 0.2 10 39-48 239-248 (507)
226 2bzr_A Propionyl-COA carboxyla 24.2 33 0.0011 28.5 1.9 51 33-83 382-459 (548)
227 1xm8_A Glyoxalase II; structur 23.9 31 0.0011 24.4 1.5 14 34-47 101-114 (254)
228 2xxa_A Signal recognition part 23.7 33 0.0011 27.0 1.7 16 33-48 182-197 (433)
229 1zu4_A FTSY; GTPase, signal re 23.7 33 0.0011 25.7 1.6 16 33-48 190-205 (320)
230 1k07_A FEZ-1 beta-lactamase; m 23.6 32 0.0011 23.6 1.5 14 34-47 138-151 (263)
231 4ad9_A Lactb2, beta-lactamase- 23.4 32 0.0011 24.0 1.5 14 34-47 135-148 (289)
232 2qnr_A Septin-2, protein NEDD5 23.3 35 0.0012 24.9 1.7 32 37-69 130-168 (301)
233 2xf4_A Hydroxyacylglutathione 23.2 34 0.0012 22.5 1.5 14 34-47 121-134 (210)
234 3rcn_A Beta-N-acetylhexosamini 23.0 20 0.0007 29.5 0.4 12 37-48 241-252 (543)
235 1jak_A Beta-N-acetylhexosamini 22.9 21 0.00071 29.1 0.4 10 39-48 250-259 (512)
236 2v3c_C SRP54, signal recogniti 22.9 33 0.0011 26.9 1.6 14 34-47 180-193 (432)
237 3iu1_A Glycylpeptide N-tetrade 22.8 65 0.0022 26.2 3.3 22 9-30 271-292 (383)
238 2www_A Methylmalonic aciduria 22.6 36 0.0012 25.5 1.6 13 33-45 165-177 (349)
239 4dzz_A Plasmid partitioning pr 22.3 47 0.0016 21.4 2.0 14 33-46 74-87 (206)
240 2qed_A Hydroxyacylglutathione 21.9 36 0.0012 24.2 1.5 14 34-47 106-119 (258)
241 2epl_X N-acetyl-beta-D-glucosa 21.6 22 0.00076 29.8 0.3 11 38-48 163-173 (627)
242 2qk7_A Gamma-hemolysin compone 21.5 27 0.00092 27.3 0.8 34 10-44 27-60 (288)
243 1ni3_A YCHF GTPase, YCHF GTP-b 21.4 67 0.0023 25.1 3.1 11 36-46 86-96 (392)
244 3gh5_A HEX1, beta-hexosaminida 21.3 23 0.00079 29.2 0.4 12 37-48 273-284 (525)
245 2vw8_A PA1000, PQSE; quinolone 21.1 39 0.0013 23.7 1.5 13 35-47 151-163 (303)
246 3ne8_A N-acetylmuramoyl-L-alan 21.1 33 0.0011 25.0 1.2 10 54-63 43-53 (234)
247 2px0_A Flagellar biosynthesis 20.3 32 0.0011 25.3 0.9 16 33-48 181-196 (296)
248 1u0l_A Probable GTPase ENGC; p 20.2 69 0.0024 23.2 2.7 39 22-62 50-88 (301)
No 1
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.15 E-value=2.6e-12 Score=104.73 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=47.6
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchhhhhccc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFFVQLRNF 59 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~mR~RGa 59 (93)
+|+|+|+++++..+|++||||+++++.++++ +..++|+|||||++|.. ||.||+
T Consensus 19 TLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~---~~~~~~ 72 (501)
T 1zo1_I 19 SLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTS---MRARGA 72 (501)
T ss_dssp HHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTT---SBCSSS
T ss_pred HHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHH---HHHHHH
Confidence 5899999999999999999999999998874 67899999999999987 566653
No 2
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.09 E-value=2.7e-11 Score=99.92 Aligned_cols=55 Identities=31% Similarity=0.379 Sum_probs=42.0
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcC----------------CCCeeEEEcCCCcccccCchhhhhcc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMST----------------GGIKFNFHNCEFYHRTSLFFFVQLRN 58 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~----------------~~~~itFiDTPGHeAFs~f~~mR~RG 58 (93)
+|+++|+++.++..|+|||||++|++.++... +...++|+|||||++|+. |+.|+
T Consensus 20 TLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~---~~~r~ 90 (594)
T 1g7s_A 20 TLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT---LRKRG 90 (594)
T ss_dssp HHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT---SBCSS
T ss_pred HHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH---HHHHH
Confidence 58999999999999999999999999997530 122699999999999987 56554
No 3
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.98 E-value=2.6e-11 Score=99.61 Aligned_cols=54 Identities=41% Similarity=0.594 Sum_probs=47.4
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchhhhhcc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFFVQLRN 58 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~mR~RG 58 (93)
+||++|++++++..|.+||||+++++.+..+ ++.+++|+|||||++|.. |+.|+
T Consensus 19 SLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~---~~~~~ 72 (537)
T 3izy_P 19 TLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSA---MRARG 72 (537)
T ss_dssp HHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTT---SBBSS
T ss_pred HHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHH---HHHHH
Confidence 5899999999999999999999999999874 467899999999999987 45544
No 4
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.14 E-value=1.4e-06 Score=56.10 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=41.8
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+......+..++|++++...+..+ +..+.++|||||+.|..+
T Consensus 23 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~ 71 (178)
T 2lkc_A 23 TLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTM 71 (178)
T ss_dssp HHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCS
T ss_pred HHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHH
Confidence 4778888888888888899999999999884 678999999999998763
No 5
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.03 E-value=1.3e-06 Score=69.49 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=28.6
Q ss_pred ChhhHHhhcC-------CcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTS-------VVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~-------Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+++|.+.. .......|||++++...+.++ +..++|+|||||+.|..
T Consensus 34 TLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~ 88 (482)
T 1wb1_A 34 TLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIR 88 (482)
T ss_dssp HHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHH
T ss_pred HHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHH
Confidence 3677777655 334456789999999998884 67999999999999854
No 6
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.93 E-value=3.2e-06 Score=64.83 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=33.5
Q ss_pred ChhhHHhhcCC--cCcc-cCcceeeecceEEEEcC-------------C--------CCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSV--VAKE-AGGITQHVGAFVIGMST-------------G--------GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~V--a~~E-aGGITQhIGA~~V~~~~-------------~--------~~~itFiDTPGHeAFs~ 50 (93)
+|+++|.+... ...| ..|||++++........ + ...++|+|||||+.|..
T Consensus 25 TLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 98 (410)
T 1kk1_A 25 TLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMT 98 (410)
T ss_dssp HHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHH
T ss_pred HHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHH
Confidence 47788875432 2233 48999999865554421 0 15799999999999864
No 7
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.89 E-value=4e-06 Score=64.39 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=31.2
Q ss_pred ChhhHHhhcCC--cCcc-cCcceeeecceEEEEcC-------------C--------CCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSV--VAKE-AGGITQHVGAFVIGMST-------------G--------GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~V--a~~E-aGGITQhIGA~~V~~~~-------------~--------~~~itFiDTPGHeAFs~ 50 (93)
+|+++|.+... ...| ..|||++++........ + ...++|+|||||+.|..
T Consensus 23 TLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~ 96 (408)
T 1s0u_A 23 SLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMA 96 (408)
T ss_dssp HHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHH
T ss_pred HHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHH
Confidence 47888875432 2223 47999999865544310 0 15799999999999864
No 8
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.80 E-value=4e-06 Score=64.81 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=33.2
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchhhh-----hcccEeEEe
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFFVQ-----LRNFVIVLR 64 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~mR-----~RGa~iv~~ 64 (93)
.-|||.+++.+.+.. ++..++|+|||||+.|.. .|. ..++.+|+.
T Consensus 43 ~~giTi~~~~~~~~~--~~~~i~iiDtPGh~~f~~--~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 43 KKGTSSDITMYNNDK--EGRNMVFVDAHSYPKTLK--SLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEESSSEEEEECS--SSSEEEEEECTTTTTCHH--HHHHHHHTCSEEEEEEC
T ss_pred hCCEEEEeeEEEEec--CCeEEEEEECCChHHHHH--HHHHHHHHCCEEEEEEc
Confidence 458999999887766 477899999999999953 221 335566666
No 9
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.79 E-value=6.9e-06 Score=64.83 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=15.7
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||++++...+..+ +.+++|+|||||+.|..
T Consensus 104 ~~giTi~~~~~~~~~~--~~~~~iiDtPGh~~f~~ 136 (467)
T 1r5b_A 104 EKGKTVEVGRAYFETE--HRRFSLLDAPGHKGYVT 136 (467)
T ss_dssp ---------CCEEECS--SEEEEECCCCC------
T ss_pred hcCceEEeeeEEEecC--CeEEEEEECCCcHHHHH
Confidence 4699999998888774 78999999999999975
No 10
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.78 E-value=1.2e-05 Score=65.47 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=25.8
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.-|||-.-.+..+.+ ++.+|++||||||.+|+.
T Consensus 83 eRGITI~s~~~~~~~--~~~~iNlIDTPGHvDF~~ 115 (548)
T 3vqt_A 83 ERGISVTTSVMQFPY--RDRVVNLLDTPGHQDFSE 115 (548)
T ss_dssp -----CTTTEEEEEE--TTEEEEEECCCCGGGCSH
T ss_pred HCCCcEeeceEEEEE--CCEEEEEEeCCCcHHHHH
Confidence 358999999999998 488999999999999986
No 11
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.70 E-value=1.5e-05 Score=62.47 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=28.0
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
-|||.+++...+..+ +..++|+|||||+.|..
T Consensus 79 ~GiTid~~~~~~~~~--~~~~~iiDTPGh~~f~~ 110 (439)
T 3j2k_7 79 KGKTVEVGRAYFETE--KKHFTILDAPGHKSFVP 110 (439)
T ss_pred cCceEEEeEEEEecC--CeEEEEEECCChHHHHH
Confidence 589999999888874 77999999999999864
No 12
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.70 E-value=2.3e-05 Score=61.70 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=27.6
Q ss_pred cceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 18 GITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 18 GITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|||.+++.+.+.. ++..++|+|||||+.|..
T Consensus 96 GiTi~~~~~~~~~--~~~~~~iiDTPG~~~f~~ 126 (483)
T 3p26_A 96 GVTVSICTSHFST--HRANFTIVDAPGHRDFVP 126 (483)
T ss_dssp CSSCCCCEEEEEC--SSCEEEEECCCCCGGGHH
T ss_pred CcceEeeeEEEec--CCceEEEEECCCcHHHHH
Confidence 9999999988877 478999999999999864
No 13
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.67 E-value=4.5e-06 Score=68.71 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=28.3
Q ss_pred cceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 18 GITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 18 GITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|||.+..+..+.+ ++.+|++||||||.+|+.
T Consensus 52 GITI~s~~~~~~~--~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 52 GITIQTGITSFQW--ENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp SSCSSCCCCCCBC--SSCBCCCEECCCSSSTHH
T ss_pred CCcEEeeeEEEEE--CCEEEEEEECCCcHHHHH
Confidence 8999999999888 488999999999999986
No 14
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.63 E-value=2e-05 Score=61.13 Aligned_cols=32 Identities=19% Similarity=0.070 Sum_probs=25.5
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.|||++++...+.. +..+++|+|||||+.|..
T Consensus 88 rGiTi~~~~~~~~~--~~~~~~iiDtpGh~~f~~ 119 (434)
T 1zun_B 88 QGITIDVAYRYFST--AKRKFIIADTPGHEQYTR 119 (434)
T ss_dssp --CCCCCEEEEEEC--SSEEEEEEECCCSGGGHH
T ss_pred CCcEEEeeeeEeec--CCceEEEEECCChHHHHH
Confidence 58999998777766 467899999999999964
No 15
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.56 E-value=9.3e-05 Score=46.86 Aligned_cols=52 Identities=6% Similarity=-0.040 Sum_probs=30.1
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+|+.++.+........-.++.......+..++....+.++|||||+.|..+.
T Consensus 18 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 69 (170)
T 1g16_A 18 CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69 (170)
T ss_dssp HHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH
Confidence 3667776665544444455555555556554334578999999999987643
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.51 E-value=3.9e-05 Score=58.85 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=26.1
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||.++....+.. ++..++|+|||||+.|..
T Consensus 49 ~~giTi~~~~~~~~~--~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 49 ARGITINAAHVEYST--AARHYAHTDCPGHADYVK 81 (397)
T ss_dssp ETTEEEECEEEEEEC--SSCEEEEEECSSHHHHHH
T ss_pred hcCcEEEeeeEEecc--CCeEEEEEECCChHHHHH
Confidence 568998886555543 578999999999999864
No 17
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.50 E-value=0.00013 Score=46.90 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.9
Q ss_pred CeeEEEcCCCcccccCc
Q 045003 35 IKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 35 ~~itFiDTPGHeAFs~f 51 (93)
..+.|+|||||+.|..+
T Consensus 93 ~~~~i~Dt~G~~~~~~~ 109 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI 109 (208)
T ss_dssp EEEEEEECTTGGGCTTT
T ss_pred eEEEEEECCCcHHHHHH
Confidence 68999999999998764
No 18
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.47 E-value=3.7e-05 Score=60.51 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=27.5
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
-|||.+++...+.. ++..++|+|||||+.|..
T Consensus 69 ~GiTi~~~~~~~~~--~~~~~~iiDtPGh~~f~~ 100 (458)
T 1f60_A 69 RGITIDIALWKFET--PKYQVTVIDAPGHRDFIK 100 (458)
T ss_dssp TTCCCSCSCEEEEC--SSEEEEEEECCCCTTHHH
T ss_pred cCcEEEEEEEEEec--CCceEEEEECCCcHHHHH
Confidence 68999999888776 467899999999999854
No 19
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.46 E-value=4.9e-05 Score=58.11 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=25.9
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||.++....+.. ++..++|+|||||+.|..
T Consensus 58 ~~GiTi~~~~~~~~~--~~~~~~iiDtpG~~~f~~ 90 (405)
T 2c78_A 58 ARGITINTAHVEYET--AKRHYSHVDCPGHADYIK 90 (405)
T ss_dssp HHTCCCSCEEEEEEC--SSCEEEEEECCCSGGGHH
T ss_pred HcCCCEEeeeeEecc--CCeEEEEEECCChHHHHH
Confidence 468998886555544 578999999999999864
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=46.79 Aligned_cols=52 Identities=6% Similarity=-0.019 Sum_probs=32.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+|+.++.+........-.+|-+.....+...+....+.++|||||+.|..+.
T Consensus 24 sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 75 (181)
T 3tw8_B 24 SLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75 (181)
T ss_dssp HHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC
T ss_pred HHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH
Confidence 3666676655554445556666665666664333679999999999987643
No 21
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.43 E-value=0.00015 Score=47.91 Aligned_cols=51 Identities=4% Similarity=-0.053 Sum_probs=34.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+..........++.+.....+..++....+.++|||||+.|..+
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (207)
T 1vg8_A 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73 (207)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 366777666655555555555555556665433457999999999998763
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.41 E-value=0.00016 Score=46.54 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=32.1
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........-.++.......+...+....+.++|||||+.|..+
T Consensus 27 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 77 (181)
T 2efe_B 27 SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 77 (181)
T ss_dssp HHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG
T ss_pred HHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh
Confidence 356666665555444444444444445555433558999999999988753
No 23
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.41 E-value=7.6e-05 Score=61.90 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=21.9
Q ss_pred cCcceeeecceEEEEcC---CCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMST---GGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~---~~~~itFiDTPGHeAFs~ 50 (93)
.-|||.+..+..+.+.. ....++|+|||||+.|+.
T Consensus 49 erGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ 86 (599)
T 3cb4_D 49 ERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSY 86 (599)
T ss_dssp --------CEEEEEEECTTSCEEEEEEEECCCCGGGHH
T ss_pred cccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHH
Confidence 36899999999888752 235899999999999974
No 24
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.37 E-value=5.8e-05 Score=62.20 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=28.2
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.|||.++....+.. ++..++|+|||||+.|..
T Consensus 229 ~GiTid~~~~~~~~--~~~~~~iiDTPG~e~f~~ 260 (611)
T 3izq_1 229 RGVTVSICTSHFST--HRANFTIVDAPGHRDFVP 260 (611)
T ss_dssp TTTCCSCSCCEEEC--SSCEEEEEECCSSSCHHH
T ss_pred CCeeEeeeeEEEec--CCceEEEEECCCCcccHH
Confidence 59999999999887 478999999999999864
No 25
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.36 E-value=5.7e-05 Score=58.71 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=19.4
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||.++....+.. ++.+++|+|||||+.|..
T Consensus 67 ~~giTi~~~~~~~~~--~~~~~~iiDtpG~~~f~~ 99 (435)
T 1jny_A 67 ERGVTINLTFMRFET--KKYFFTIIDAPGHRDFVK 99 (435)
T ss_dssp ----------CEEEC--SSCEEEECCCSSSTTHHH
T ss_pred hcCceeEeeEEEEec--CCeEEEEEECCCcHHHHH
Confidence 358999998877776 478999999999999964
No 26
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.36 E-value=1.3e-05 Score=65.74 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=11.0
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||++++...+... +..++|+|||||+.|..
T Consensus 238 ~~GiTid~~~~~~~~~--~~~i~iiDTPGh~~f~~ 270 (592)
T 3mca_A 238 ARGVTMDVASTTFESD--KKIYEIGDAPGHRDFIS 270 (592)
T ss_dssp -----------------------CCEEESSSEEEE
T ss_pred cCCeeEEeeEEEEEeC--CeEEEEEECCChHHHHH
Confidence 3489999999888874 78999999999999865
No 27
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.35 E-value=0.00023 Score=47.49 Aligned_cols=51 Identities=6% Similarity=0.001 Sum_probs=32.8
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........-.++.......+..++....+.++|||||+.|..+
T Consensus 23 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 23 CLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73 (206)
T ss_dssp HHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 366777665555444445554554455555433458999999999988764
No 28
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.34 E-value=0.00016 Score=51.82 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=33.6
Q ss_pred ChhhHHhhcCC-cCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSV-VAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~V-a~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.+|.+..+ ...+.-+.|+..-...+.. ++..++++|||||+.|..
T Consensus 51 SLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 51 STVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp HHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTE
T ss_pred HHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCccc
Confidence 36677776655 2344566777766666666 477999999999999865
No 29
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.33 E-value=0.00024 Score=47.10 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=32.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........-.++.......+..++....+.|+|||||+.|..+
T Consensus 35 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 85 (213)
T 3cph_A 35 CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85 (213)
T ss_dssp HHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC
T ss_pred HHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 366677665554444444554454555555422357999999999998763
No 30
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.31 E-value=0.00021 Score=45.56 Aligned_cols=51 Identities=6% Similarity=-0.032 Sum_probs=32.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+..........++.+.....+..++....+.++||||++.|..+
T Consensus 29 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 79 (179)
T 2y8e_A 29 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 79 (179)
T ss_dssp HHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred HHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH
Confidence 366666655555444455555555555655433458999999999988763
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.31 E-value=0.00029 Score=44.47 Aligned_cols=51 Identities=4% Similarity=-0.069 Sum_probs=29.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........-.++.+.....+..++....+.++||||++.|..+
T Consensus 20 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 70 (168)
T 1z2a_A 20 SMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 70 (168)
T ss_dssp HHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC
T ss_pred HHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH
Confidence 356666654443332222333333444555433458999999999988764
No 32
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.29 E-value=0.00016 Score=60.31 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=28.2
Q ss_pred cCcceeeecceEEEEcC-----CCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMST-----GGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~-----~~~~itFiDTPGHeAFs~ 50 (93)
..|||.+..+..+.+.+ +...++++|||||+.|+.
T Consensus 58 ~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~ 97 (704)
T 2rdo_7 58 ERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTI 97 (704)
T ss_pred hcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHH
Confidence 46899999888888742 127899999999999965
No 33
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.29 E-value=0.00011 Score=60.92 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=23.5
Q ss_pred cCcceeeecceEEEEcC-----CCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMST-----GGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~-----~~~~itFiDTPGHeAFs~ 50 (93)
.-|||-+-.+..+.+.+ ++..|++||||||.+|+.
T Consensus 61 eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~ 100 (709)
T 4fn5_A 61 ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTI 100 (709)
T ss_dssp -------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHH
T ss_pred HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHH
Confidence 35899999999998853 245899999999999975
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.28 E-value=0.00021 Score=45.34 Aligned_cols=50 Identities=4% Similarity=-0.053 Sum_probs=26.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+........-.++.......+..++....+.++|||||+.|..
T Consensus 21 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 21 SLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70 (170)
T ss_dssp HHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----
T ss_pred HHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh
Confidence 35666666555444444444444444555543334788999999998865
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00027 Score=44.52 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=28.3
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+........-.++.......+..++....+.++|||||+.|..+
T Consensus 19 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 19 IVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred HHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh
Confidence 56666654443332222333333334444333458999999999988763
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.25 E-value=0.00032 Score=45.80 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=34.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+|+.++.+........-.+|-......+..++....+.|+|||||+.|..+.
T Consensus 31 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 82 (196)
T 3tkl_A 31 CLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82 (196)
T ss_dssp HHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH
T ss_pred HHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 3666776655555545556655555566664333579999999999987643
No 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.25 E-value=0.00031 Score=44.26 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=27.8
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........--++.......+..+.....+.++|||||+.|..
T Consensus 22 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 22 LVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp HHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred HHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 5666665444333222222223233444443356899999999998865
No 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.24 E-value=0.0002 Score=46.40 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=33.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+..........++.......+..++....+.++|||||+.|..
T Consensus 25 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 74 (186)
T 2bme_A 25 CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74 (186)
T ss_dssp HHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 36667766655555555566555555666643335899999999998864
No 39
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.20 E-value=0.00031 Score=46.48 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=28.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........-.++.......+..++....+.++|||||+.|..+
T Consensus 36 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 86 (191)
T 2a5j_A 36 CLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 86 (191)
T ss_dssp HHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC
T ss_pred HHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 356666655544433333343444444555433458999999999998764
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.19 E-value=0.00026 Score=45.14 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=31.0
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+..........++..+....+..++....+.++||||++.|..
T Consensus 30 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 79 (179)
T 1z0f_A 30 CLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79 (179)
T ss_dssp HHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH
T ss_pred HHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhh
Confidence 36667766655544444444344444555543345799999999998765
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00044 Score=44.93 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=29.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+........-.++.......+..++....+.++|||||+.|..+.
T Consensus 31 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 81 (195)
T 1x3s_A 31 LLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81 (195)
T ss_dssp HHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred HHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Confidence 566666554443333333333333344444345679999999999987643
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.00051 Score=43.40 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=27.0
Q ss_pred hhhHHhhcCCcCc--ccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAK--EAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~--EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+...... ..-|.+.. ...+...+....+.++||||++.|..+
T Consensus 22 li~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 71 (170)
T 1z0j_A 22 IMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFRAL 71 (170)
T ss_dssp HHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred HHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhhcc
Confidence 5556655443222 12233322 233444334568999999999988764
No 43
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.11 E-value=0.00069 Score=44.55 Aligned_cols=50 Identities=8% Similarity=-0.059 Sum_probs=28.1
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+........-.++.......+...+....+.++|||||+.|..+
T Consensus 38 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 87 (189)
T 2gf9_A 38 FLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87 (189)
T ss_dssp HHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS
T ss_pred HHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh
Confidence 56666655443322222222233334444333558999999999988763
No 44
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.09 E-value=0.00021 Score=59.52 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=24.5
Q ss_pred CcceeeecceEEEEcC---CCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMST---GGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~---~~~~itFiDTPGHeAFs~ 50 (93)
.|||.+..+..+.+.. ....++|+|||||+.|+.
T Consensus 52 rGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ 88 (600)
T 2ywe_A 52 RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSY 88 (600)
T ss_dssp ----CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHH
T ss_pred ccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHH
Confidence 6899999999888752 235799999999999964
No 45
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.0003 Score=52.79 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=28.8
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+|+.+|.+..+...++ |+.+....+.. ++.++.|+|||||+.|..+.
T Consensus 180 sLl~~l~~~~~~~~~p---T~~~~~~~~~~--~~~~l~i~Dt~G~~~~~~~~ 226 (329)
T 3o47_A 180 TILYKLKLGEIVTTIP---TIGFNVETVEY--KNISFTVWDVGGQDKIRPLW 226 (329)
T ss_dssp HHHHHTCSSCCEEEEE---ETTEEEEEEEE--TTEEEEEEECC-----CCSH
T ss_pred HHHHHHhCCCCCCccc---ccceEEEEEec--CcEEEEEEECCCCHhHHHHH
Confidence 4677777666655443 66666666665 47789999999999998743
No 46
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.05 E-value=0.00019 Score=59.71 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=22.8
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||....+..+.+. +..++|+|||||+.|..
T Consensus 60 ~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~~ 92 (691)
T 1dar_A 60 ERGITITAAVTTCFWK--DHRINIIDTPGHVDFTI 92 (691)
T ss_dssp -------CCEEEEEET--TEEEEEECCCSSTTCHH
T ss_pred hcccccccceEEEEEC--CeEEEEEECcCccchHH
Confidence 4579999998888874 78999999999999865
No 47
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.05 E-value=0.00018 Score=46.72 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=17.0
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+........-.++.+.....+..++....+.++||||++.|..+
T Consensus 24 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (183)
T 2fu5_C 24 VLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73 (183)
T ss_dssp ------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------
T ss_pred HHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh
Confidence 45555443333333334454555555655433468999999999988653
No 48
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.04 E-value=0.00042 Score=44.25 Aligned_cols=50 Identities=4% Similarity=-0.099 Sum_probs=23.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEc-CCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMS-TGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~-~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+..........++.......+..+ +....+.++||||++.|..
T Consensus 23 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 23 SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 73 (182)
T ss_dssp HHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------
T ss_pred HHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh
Confidence 3566666655444444444444444445443 2345799999999998865
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.03 E-value=0.00053 Score=45.12 Aligned_cols=49 Identities=8% Similarity=0.050 Sum_probs=30.4
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+|+.++.+........-.++-......+..++...++.++||||++.|.
T Consensus 35 sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 35 CLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp HHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred HHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 3667776655544444444434444445554334589999999999886
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.03 E-value=0.00053 Score=43.92 Aligned_cols=49 Identities=4% Similarity=-0.121 Sum_probs=26.3
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........-.++.......+..++....+.++||||++.|..
T Consensus 23 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 71 (177)
T 1wms_A 23 LMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71 (177)
T ss_dssp HHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH
T ss_pred HHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 5666655443333222333333334444432235899999999998765
No 51
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.99 E-value=0.00076 Score=44.34 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=28.7
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+.........-++.......+...+....+.|+||||++.|..+
T Consensus 40 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (193)
T 2oil_A 40 NLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90 (193)
T ss_dssp HHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT
T ss_pred HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 366677665544332222222222233444334568999999999988764
No 52
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.97 E-value=0.00085 Score=42.76 Aligned_cols=50 Identities=6% Similarity=-0.019 Sum_probs=29.5
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........+-+...+. ..+..++....+.++|||||+.|..+
T Consensus 24 sli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 73 (181)
T 2fn4_A 24 ALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAM 73 (181)
T ss_dssp HHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCC
T ss_pred HHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 356666665554444444333332 33444322357899999999988764
No 53
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.95 E-value=0.0012 Score=42.61 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=27.4
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+.........-+.-.. ...+..++....+.++||||++.|..+.
T Consensus 22 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (181)
T 3t5g_A 22 LTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71 (181)
T ss_dssp HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCC
T ss_pred HHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 5566654443333333222222 3334443233567999999999987643
No 54
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0008 Score=45.95 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=27.2
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+........-.++.......+..++....+.++|||||+.|..+.
T Consensus 29 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 79 (223)
T 3cpj_B 29 LLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79 (223)
T ss_dssp HHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred HHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH
Confidence 566666554433222223323333344453223589999999999987643
No 55
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.92 E-value=0.00045 Score=54.87 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=30.0
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+++|-+.+++ ..+.-|+|.+.....+... +..++.++|||||+.|..+
T Consensus 49 TLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l 99 (423)
T 3qq5_A 49 SFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGEL 99 (423)
T ss_dssp TTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTT
T ss_pred HHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccch
Confidence 467777666553 3456789999888888875 3348999999999998764
No 56
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.92 E-value=0.00047 Score=55.97 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=27.3
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
-|||.......+.+ ++..++++|||||+.|..
T Consensus 66 ~GiTi~~~~~~~~~--~~~~i~liDTPG~~df~~ 97 (528)
T 3tr5_A 66 RGISVTTSVMQFPY--KDYLINLLDTPGHADFTE 97 (528)
T ss_dssp HCCSSSSSEEEEEE--TTEEEEEECCCCSTTCCH
T ss_pred CCeeEEEeEEEEEe--CCEEEEEEECCCchhHHH
Confidence 57888888888887 478999999999999976
No 57
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.00044 Score=46.50 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=25.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+........-.++.......+..++....+.++||||++.|..+
T Consensus 41 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 90 (200)
T 2o52_A 41 LLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90 (200)
T ss_dssp HHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC
T ss_pred HHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH
Confidence 56666554444433344444444455555433468999999999988764
No 58
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.88 E-value=0.0017 Score=41.65 Aligned_cols=50 Identities=0% Similarity=-0.128 Sum_probs=26.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+.........-+. ..-...+...+....+.++|||||+.|..+.
T Consensus 21 l~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (186)
T 1mh1_A 21 LLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70 (186)
T ss_dssp HHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTG
T ss_pred HHHHHHcCCCCCCcCCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHH
Confidence 5666665444333222221 1112234443334467799999999987643
No 59
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.00095 Score=42.80 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=26.0
Q ss_pred ChhhHHhhcCCcC-cccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVA-KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~-~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+..... ...-.++.......+..++....+.++|||||+.|..
T Consensus 25 sli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 75 (180)
T 2g6b_A 25 CLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS 75 (180)
T ss_dssp HHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred HHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 3566666655432 2233444444444445543334799999999998865
No 60
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.84 E-value=0.0014 Score=43.19 Aligned_cols=51 Identities=4% Similarity=-0.025 Sum_probs=30.1
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchh
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFF 53 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~ 53 (93)
|+.++.+.........-+..... ..+..++....+.++||||++.|..+..
T Consensus 39 l~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 89 (194)
T 3reg_A 39 LLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRP 89 (194)
T ss_dssp HHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGG
T ss_pred HHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhH
Confidence 56666665554444444433333 2344432344579999999999976443
No 61
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.84 E-value=0.00059 Score=55.31 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=23.6
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.-|||.......+.+ ++..++++|||||+.|+.
T Consensus 65 ~rGiTi~~~~~~~~~--~~~~i~liDTPG~~df~~ 97 (529)
T 2h5e_A 65 QRGISITTSVMQFPY--HDCLVNLLDTPGHEDFSE 97 (529)
T ss_dssp -----CCTTEEEEEE--TTEEEEEECCCCSTTCCH
T ss_pred cCCcceeeeEEEEEE--CCeEEEEEECCCChhHHH
Confidence 357887777777777 478999999999999974
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.0013 Score=43.67 Aligned_cols=49 Identities=12% Similarity=-0.047 Sum_probs=27.2
Q ss_pred ChhhHHhhcCCcCc--ccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAK--EAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~--EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+...... ..-|.|.. ...+.......++.++||||++.|..+
T Consensus 38 sli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 88 (192)
T 2fg5_A 38 SIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQERFHSL 88 (192)
T ss_dssp HHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGGGGGG
T ss_pred HHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchhhHhh
Confidence 35666665443221 12233322 223444334568999999999988763
No 63
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.81 E-value=0.0015 Score=42.27 Aligned_cols=50 Identities=8% Similarity=-0.101 Sum_probs=28.4
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+.........-++... ...+..++....+.++||||++.|..+.
T Consensus 34 l~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 83 (183)
T 3kkq_A 34 LTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMR 83 (183)
T ss_dssp HHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred HHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHH
Confidence 5566665544444444443333 3344443233456779999999987744
No 64
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.81 E-value=0.0016 Score=45.77 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=32.8
Q ss_pred ChhhHHhhcCCcC--cccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 1 MISDALRQTSVVA--KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 1 sLLD~IR~t~Va~--~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+|+.+|-+..+.. ...+++|...-...+.. ++..+.|+|||||..|.
T Consensus 37 tl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 37 AAGNSILRKQAFESKLGSQTLTKTCSKSQGSW--GNREIVIIDTPDMFSWK 85 (260)
T ss_dssp HHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE--TTEEEEEEECCGGGGSS
T ss_pred HHHHHHhCCCCcccCCCCCceeeeeEEEEEEe--CCCEEEEEECcCCCCCC
Confidence 3566676555333 33445888877667766 47789999999998875
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.80 E-value=0.00086 Score=44.43 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=26.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........-.++-......+...+....+.++|||||+.|..
T Consensus 24 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 24 FLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp HHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred HHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 5666665443322222222222223344433355899999999998864
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.75 E-value=0.00092 Score=41.75 Aligned_cols=48 Identities=6% Similarity=-0.037 Sum_probs=26.1
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+.........-++ ..-...+..++....+.++||||++.|..
T Consensus 19 li~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 19 LTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp HHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred HHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 5566655444333222222 11133444433344699999999998765
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.75 E-value=0.002 Score=43.10 Aligned_cols=52 Identities=2% Similarity=-0.129 Sum_probs=30.1
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchh
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFF 53 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~ 53 (93)
+|+.++.+..........++..+- ..+..++....+.++||||++.|..+..
T Consensus 40 sli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 91 (201)
T 2gco_A 40 CLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRP 91 (201)
T ss_dssp HHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred HHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHH
Confidence 356666665554443334443332 2344432334789999999999876443
No 68
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.74 E-value=0.00072 Score=47.06 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=29.1
Q ss_pred ChhhHHhhcCCcCcccC--cceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 1 MISDALRQTSVVAKEAG--GITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaG--GITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
+|+.+|-+..+.....- ++|.+.....+.. ++..++++||||..
T Consensus 44 tlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 44 ATGNSILGRKVFHSGTAAKSITKKCEKRSSSW--KETELVVVDTPGIF 89 (239)
T ss_dssp HHHHHHHTSCCSCC-------CCSCEEEEEEE--TTEEEEEEECCSCC
T ss_pred HHHHHHcCCCcCccCCCCCceeeeEEEEEEEe--CCceEEEEECCCcc
Confidence 36677776665444333 7888888777877 47799999999954
No 69
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.74 E-value=0.0013 Score=41.41 Aligned_cols=49 Identities=8% Similarity=-0.013 Sum_probs=26.7
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+.........-+.... ...+..++....+.++||||++.|..+
T Consensus 19 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1c1y_A 19 LTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp HHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTH
T ss_pred HHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHH
Confidence 5666665444333222222111 123333333457999999999988763
No 70
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.72 E-value=0.001 Score=45.52 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=29.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+........-.++-+.....+..++....+.+.||||++.|..
T Consensus 41 sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 90 (201)
T 2ew1_A 41 CLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90 (201)
T ss_dssp HHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 35666666555443333343344444555543334799999999998864
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.71 E-value=0.00047 Score=46.01 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=28.2
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+........-.+|-......+..++....+.++||||++.|..+
T Consensus 49 li~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 49 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98 (199)
T ss_dssp TTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC
T ss_pred HHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 44444443333332334444444445555423357999999999998763
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.69 E-value=0.0012 Score=42.35 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.9
Q ss_pred CeeEEEcCCCcccccC
Q 045003 35 IKFNFHNCEFYHRTSL 50 (93)
Q Consensus 35 ~~itFiDTPGHeAFs~ 50 (93)
..+.++|||||+.|..
T Consensus 70 ~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRS 85 (195)
T ss_dssp EEEEEEEECCSGGGHH
T ss_pred EEEEEEeCCCcHHHHH
Confidence 4899999999998865
No 73
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0024 Score=41.92 Aligned_cols=50 Identities=4% Similarity=-0.031 Sum_probs=27.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+.........-+.... ...+...+....+.++|||||+.|..+
T Consensus 33 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~ 82 (194)
T 2atx_A 33 CLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRL 82 (194)
T ss_dssp HHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTT
T ss_pred HHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHH
Confidence 35666665544333222222221 223444323357899999999988764
No 74
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.00051 Score=45.76 Aligned_cols=49 Identities=4% Similarity=0.049 Sum_probs=25.7
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........-.++.......+...+....+.++||||++.|..
T Consensus 42 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 90 (192)
T 2il1_A 42 LMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90 (192)
T ss_dssp HHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred HHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH
Confidence 5666655444333333344344444455542345799999999998865
No 75
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.66 E-value=0.00068 Score=43.42 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=27.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcC-CCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMST-GGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~-~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+..........++.+.....+..++ ....+.+.||||++.|..+
T Consensus 22 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 72 (178)
T 2hxs_A 22 LTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72 (178)
T ss_dssp HHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT
T ss_pred HHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch
Confidence 5555554443322222233333334455532 1368999999999988764
No 76
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.0023 Score=42.67 Aligned_cols=49 Identities=2% Similarity=0.074 Sum_probs=26.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+.........-+.-.+ ...+...+....+.++||||++.|..+
T Consensus 40 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 88 (201)
T 3oes_A 40 LAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL 88 (201)
T ss_dssp HHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC
T ss_pred HHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHH
Confidence 5666666554433333222222 222333334567899999999998764
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.65 E-value=0.0024 Score=40.41 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=27.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+.......+ |..+-...+.. +..++.++|||||+.|..+
T Consensus 22 sl~~~l~~~~~~~~~~---t~~~~~~~~~~--~~~~~~~~Dt~G~~~~~~~ 67 (171)
T 1upt_A 22 TILYRLQVGEVVTTIP---TIGFNVETVTY--KNLKFQVWDLGGLTSIRPY 67 (171)
T ss_dssp HHHHHHHHSSCCCCCC---CSSEEEEEEEE--TTEEEEEEEECCCGGGGGG
T ss_pred HHHHHHhcCCCCCcCC---cCccceEEEEE--CCEEEEEEECCCChhhhHH
Confidence 3566665544433222 22222234444 3678999999999988653
No 78
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.64 E-value=0.00076 Score=56.12 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=23.0
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.-|||.......+.+. +..++|+|||||..|..
T Consensus 58 ~~giTi~~~~~~~~~~--~~~i~liDTPG~~df~~ 90 (693)
T 2xex_A 58 DRGITITSAATTAAWE--GHRVNIIDTPGHVDFTV 90 (693)
T ss_dssp ------CCSEEEEEET--TEEEEEECCCCCSSCCH
T ss_pred hcCceEeeeeEEEEEC--CeeEEEEECcCCcchHH
Confidence 3578888888778774 78999999999999865
No 79
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.64 E-value=0.002 Score=41.43 Aligned_cols=51 Identities=10% Similarity=-0.052 Sum_probs=26.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+|+.+|.+........+-+ .......+..++....+.++|||||+.|..+.
T Consensus 19 sli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 69 (189)
T 4dsu_A 19 ALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69 (189)
T ss_dssp HHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTH
T ss_pred HHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHH
Confidence 3666776655544433332 22222334443233457889999999987744
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.63 E-value=0.0017 Score=41.03 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=26.1
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+.......+ |.......+.. +..++.++|||||+.|..
T Consensus 16 l~~~l~~~~~~~~~~---t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~ 59 (164)
T 1r8s_A 16 ILYKLKLGEIVTTIP---TIGFNVETVEY--KNISFTVWDVGGQDKIRP 59 (164)
T ss_dssp HHHHHHHHCSSCCCC---CSSCCEEEEEC--SSCEEEEEECCCCGGGHH
T ss_pred HHHHHHcCCcCcccC---cCceeEEEEEE--CCEEEEEEEcCCChhhHH
Confidence 566665544433222 32222233443 468999999999998865
No 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.63 E-value=0.0015 Score=40.61 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=26.1
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+.........-+.... ...+...+....+.++|||||+.|..
T Consensus 19 l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 19 LTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred HHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhH
Confidence 5566655444433333222221 23344433345689999999998765
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0026 Score=42.49 Aligned_cols=25 Identities=4% Similarity=-0.019 Sum_probs=16.9
Q ss_pred EEEcCCCCeeEEEcCCCcccccCch
Q 045003 28 IGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+..++....+.++|||||+.|..+.
T Consensus 50 ~~~~~~~~~~~i~Dt~G~~~~~~~~ 74 (212)
T 2j0v_A 50 VAVDGQIVNLGLWDTAGQEDYSRLR 74 (212)
T ss_dssp EECSSCEEEEEEECCCCCCCCCC--
T ss_pred EEECCEEEEEEEEECCCcHHHHHHH
Confidence 3343233589999999999987643
No 83
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.61 E-value=0.0011 Score=44.70 Aligned_cols=49 Identities=6% Similarity=0.098 Sum_probs=24.8
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........-.++.......+..++....+.++||||++.|..
T Consensus 45 li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (201)
T 2hup_A 45 VVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 93 (201)
T ss_dssp HHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHH
T ss_pred HHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 5666655444332222222233334455532235899999999998865
No 84
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.60 E-value=0.00063 Score=44.61 Aligned_cols=29 Identities=3% Similarity=-0.087 Sum_probs=18.5
Q ss_pred eecceEEEEcCC--CCeeEEEcCCCcccccC
Q 045003 22 HVGAFVIGMSTG--GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 22 hIGA~~V~~~~~--~~~itFiDTPGHeAFs~ 50 (93)
+.....+..++. ...+.++||||++.|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 88 (208)
T 2yc2_C 58 EVVVAPVTIPDTTVSVELFLLDTAGSDLYKE 88 (208)
T ss_dssp ---CEEEECTTSSEEEEEEEEETTTTHHHHH
T ss_pred EEEEEEEEECCcccEEEEEEEECCCcHHHHH
Confidence 444455555422 45799999999998754
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.59 E-value=0.0013 Score=41.06 Aligned_cols=49 Identities=2% Similarity=-0.069 Sum_probs=24.5
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+.........-+.... ...+..++....+.++|||||+.|..
T Consensus 19 sl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 19 ALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp HHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred HHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 35666666554443333222221 22344432334799999999998754
No 86
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.58 E-value=0.00072 Score=61.75 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=22.4
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..|||+++....++. ++.+++|+|||||+.|..
T Consensus 342 erGITIdva~v~f~~--~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 342 ARGITINTSHVEYDT--PTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp ------CCSCEEEEC--SSCEEEEEECCCHHHHHH
T ss_pred cCceeEEEEEEEEcC--CCEEEEEEECCChHHHHH
Confidence 579999997766654 578999999999999964
No 87
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.52 E-value=0.00072 Score=45.38 Aligned_cols=49 Identities=4% Similarity=-0.082 Sum_probs=27.2
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCC----------CCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTG----------GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~----------~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+........-.++.+.....+.+++. ...+.|+|||||+.|..
T Consensus 41 Li~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 41 FLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp HHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred HHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 56666654443222222333333334444422 45799999999998865
No 88
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.48 E-value=0.0025 Score=45.62 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=31.6
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.+|-+..+. ....-|.|...-.+.+.. ++.+++++||||++.|..
T Consensus 54 SLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 54 STVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE--TTEEEEEEECCCSEETTE
T ss_pred HHHHHHhCCCcccccCCCCcceeeEEEEEee--CCeEEEEEECCCCCCCcc
Confidence 366677666543 233445666554455544 477899999999998864
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.48 E-value=0.0045 Score=40.58 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=17.9
Q ss_pred EEEcCCCCeeEEEcCCCcccccCch
Q 045003 28 IGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
+..++....+.+.||||++.|..+.
T Consensus 48 ~~~~~~~~~~~i~Dt~G~~~~~~~~ 72 (184)
T 1m7b_A 48 FEIDTQRIELSLWDTSGSPYYDNVR 72 (184)
T ss_dssp EECSSCEEEEEEEEECCSGGGTTTG
T ss_pred EEECCEEEEEEEEECCCChhhhhhH
Confidence 3343344578999999999987643
No 90
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.45 E-value=0.0011 Score=44.24 Aligned_cols=24 Identities=4% Similarity=-0.074 Sum_probs=17.2
Q ss_pred EEEEcCCCCeeEEEcCCCcccccC
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.+..++....+.++||||++.|..
T Consensus 69 ~~~~~~~~~~l~i~Dt~G~~~~~~ 92 (199)
T 2p5s_A 69 TLIVDGERTVLQLWDTAGQERFRS 92 (199)
T ss_dssp EEEETTEEEEEEEEECTTCTTCHH
T ss_pred EEEECCEEEEEEEEECCCCcchhh
Confidence 344443345799999999998765
No 91
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.42 E-value=0.0026 Score=41.50 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCCeeEEEcCCCcccccCchhh---hhcccEeEEeccc
Q 045003 32 TGGIKFNFHNCEFYHRTSLFFFV---QLRNFVIVLRKNN 67 (93)
Q Consensus 32 ~~~~~itFiDTPGHeAFs~f~~m---R~RGa~iv~~~~~ 67 (93)
.....+.++||||++.|..+... ...++.+|+.-.+
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 98 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD 98 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc
Confidence 35778999999999998764332 2345555555543
No 92
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0033 Score=42.27 Aligned_cols=50 Identities=2% Similarity=-0.094 Sum_probs=25.0
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+..........++...- ..+..++....+.++||||++.|..+.
T Consensus 41 li~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 90 (207)
T 2fv8_A 41 LLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLR 90 (207)
T ss_dssp HHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTG
T ss_pred HHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 56666655444332222222211 123443223478999999999887643
No 93
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.37 E-value=0.0022 Score=41.02 Aligned_cols=48 Identities=2% Similarity=-0.065 Sum_probs=26.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+.........-+.... ...+...+....+.++|||||+.|..
T Consensus 34 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (187)
T 2a9k_A 34 LTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 81 (187)
T ss_dssp HHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred HHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHH
Confidence 5666666554443333222111 22334432234799999999998754
No 94
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.36 E-value=0.0022 Score=42.12 Aligned_cols=49 Identities=2% Similarity=-0.069 Sum_probs=27.6
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.++.+........+-+.... ...+..++....+.|+|||||+.|..
T Consensus 29 sli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~ 77 (206)
T 2bov_A 29 ALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 77 (206)
T ss_dssp HHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred HHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHH
Confidence 36667766554443333222221 23344432234799999999998764
No 95
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.003 Score=39.68 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=14.0
Q ss_pred CCeeEEEcCCCcccccC
Q 045003 34 GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~ 50 (93)
...+.++|||||+.|..
T Consensus 50 ~~~~~~~Dt~G~~~~~~ 66 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPA 66 (172)
T ss_dssp EEEEEEEECCSCSSCHH
T ss_pred EEEEEEEECCCchhhHH
Confidence 45789999999998754
No 96
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.23 E-value=0.0046 Score=40.32 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=22.0
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.+|.+........+-++..+ ...+...+....+.++||||++.|..
T Consensus 37 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (190)
T 3con_A 37 LTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSA 84 (190)
T ss_dssp HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC------
T ss_pred HHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHH
Confidence 5666665544443333222222 23344432334699999999998765
No 97
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.21 E-value=0.0028 Score=40.64 Aligned_cols=19 Identities=0% Similarity=-0.052 Sum_probs=12.5
Q ss_pred CCeeEEEcCCCcccccCch
Q 045003 34 GIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f~ 52 (93)
...+.++|||||+.|..+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~ 73 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLR 73 (182)
T ss_dssp ---CEEECCCC-CTTTTTG
T ss_pred EEEEEEEECCCChhhhhhH
Confidence 4567799999999987643
No 98
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.20 E-value=0.0062 Score=41.08 Aligned_cols=50 Identities=0% Similarity=-0.119 Sum_probs=26.3
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+........+-+ ...-...+..++....+.++||||++.|..+.
T Consensus 46 Li~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 4gzl_A 46 LLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95 (204)
T ss_dssp HHHHHHHSCCCC-CCCCS-EEEEEEEEECC-CEEEEEEEEECCSGGGTTTG
T ss_pred HHHHHHhCCCCCCcCCee-cceeEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 555555544443333322 22222334443233356699999999997644
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.20 E-value=0.0027 Score=42.45 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=33.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCC-CCeeEEEcCCCcccccC-chhh---hhcccEeEEeccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTG-GIKFNFHNCEFYHRTSL-FFFV---QLRNFVIVLRKNN 67 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~-~~~itFiDTPGHeAFs~-f~~m---R~RGa~iv~~~~~ 67 (93)
|+.++.+...... .-.++.+.. .+..++. ...+.++|||||+.|.. +... ...++.+|++-.+
T Consensus 23 li~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 23 LFVRLLTGQYRDT-QTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp HHHHHHHSCCCCB-CCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred HHHHHhCCCcccc-cCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 5556655443322 223444433 3444322 57899999999998864 2211 2334555555433
No 100
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.19 E-value=0.0025 Score=39.96 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=26.6
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
+|+.++.+.... ..+.-++|++.....+... +..+.++||||++.+
T Consensus 16 sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 16 SLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSG 62 (161)
T ss_dssp HHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSS
T ss_pred HHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCc
Confidence 366677665533 3455677877776777764 668999999999974
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.14 E-value=0.0048 Score=40.08 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.6
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
.+.. ++.++.++|||||+.|..+
T Consensus 56 ~~~~--~~~~~~~~Dt~G~~~~~~~ 78 (186)
T 1ksh_A 56 TLEH--RGFKLNIWDVGGQKSLRSY 78 (186)
T ss_dssp EEEE--TTEEEEEEEECCSHHHHTT
T ss_pred EEEE--CCEEEEEEECCCCHhHHHH
Confidence 4444 4678999999999987653
No 102
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.12 E-value=0.0053 Score=44.61 Aligned_cols=48 Identities=6% Similarity=-0.071 Sum_probs=33.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.+|-+.+...+..-|+|.+.-...+.. ++..+.++||||+..|..
T Consensus 18 TLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 18 TLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp HHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC
T ss_pred HHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCcccc
Confidence 366677665544455567777665555555 367899999999999873
No 103
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.12 E-value=0.0065 Score=39.85 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.9
Q ss_pred CCCeeEEEcCCCcccccCc
Q 045003 33 GGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f 51 (93)
++..+.++||||++.|..+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~ 83 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNL 83 (190)
T ss_dssp SSCEEEEEEECCSTTTGGG
T ss_pred CCEEEEEEECCCCHHHHHH
Confidence 4689999999999988653
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.08 E-value=0.0026 Score=41.59 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=17.7
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
.+.. +..++.++|||||+.|..+
T Consensus 60 ~~~~--~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 60 TLQY--KNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp EEEE--TTEEEEEEEECCSSSSCCC
T ss_pred EEEE--CCEEEEEEECCCCHhHHHH
Confidence 3444 4678999999999988653
No 105
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.07 E-value=0.0053 Score=44.49 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=34.8
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.+|.+.+...+..-|+|.......+.. ++..+.++||||+..|..
T Consensus 20 sL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 20 SLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp HHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCS
T ss_pred HHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCC
Confidence 366677665554455558888776666665 367999999999998864
No 106
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.05 E-value=0.0029 Score=53.86 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=31.9
Q ss_pred CcceeeecceEEEEc--------------CCCCeeEEEcCCCcccccCch--hhh-hcccEeEEecc
Q 045003 17 GGITQHVGAFVIGMS--------------TGGIKFNFHNCEFYHRTSLFF--FVQ-LRNFVIVLRKN 66 (93)
Q Consensus 17 GGITQhIGA~~V~~~--------------~~~~~itFiDTPGHeAFs~f~--~mR-~RGa~iv~~~~ 66 (93)
-|||....+..+.+. +++..++++|||||+.|+... .+| +.|+++|+.-.
T Consensus 66 rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~ 132 (842)
T 1n0u_A 66 RGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTI 132 (842)
T ss_dssp -CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETT
T ss_pred cceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCC
Confidence 467777666666553 125689999999999997521 112 34666666643
No 107
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0011 Score=43.83 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=17.7
Q ss_pred EEEEcCCCCeeEEEcCCCcccccC
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.+...+....+.|+||||++.|..
T Consensus 64 ~~~~~~~~~~~~i~Dt~G~~~~~~ 87 (191)
T 3dz8_A 64 TVYRHEKRVKLQIWDTAGQERYRT 87 (191)
T ss_dssp EEEETTTTEEEEEECHHHHHHCHH
T ss_pred EEEECCEEEEEEEEeCCChHHHHH
Confidence 334443466899999999998865
No 108
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.02 E-value=0.0066 Score=44.91 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=28.1
Q ss_pred ChhhHHhhcCCcC-cccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 1 MISDALRQTSVVA-KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 1 sLLD~IR~t~Va~-~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
+|+.+|.+.+++. ...-+.|++.-...+.. ++..++|+|||||+
T Consensus 23 TLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 23 TLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLH 67 (301)
T ss_dssp HHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCC
T ss_pred HHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCC
Confidence 4788888776642 22334565433223333 46789999999998
No 109
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.01 E-value=0.0094 Score=40.71 Aligned_cols=50 Identities=4% Similarity=-0.028 Sum_probs=26.9
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCch
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~ 52 (93)
|+.++.+.........-+.... ...+..++....+.|+||||++.|..+.
T Consensus 44 Li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 93 (205)
T 1gwn_A 44 LLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVR 93 (205)
T ss_dssp HHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTG
T ss_pred HHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHH
Confidence 5556655444332222222221 1233333334579999999999987643
No 110
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.95 E-value=0.0041 Score=51.43 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=24.9
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
.|||.......+.. +...++++|||||+.|..
T Consensus 58 ~giti~~~~~~~~~--~~~~~nliDTpG~~~f~~ 89 (665)
T 2dy1_A 58 HRTTVRTGVAPLLF--RGHRVFLLDAPGYGDFVG 89 (665)
T ss_dssp TTSCCSCEEEEEEE--TTEEEEEEECCCSGGGHH
T ss_pred cCCeEEecceEEee--CCEEEEEEeCCCccchHH
Confidence 36777666666665 477899999999999865
No 111
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.94 E-value=0.0045 Score=41.39 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=11.5
Q ss_pred CCCeeEEEcCCCcccccCc
Q 045003 33 GGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f 51 (93)
++..+.++||||++.|..+
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~ 89 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPL 89 (192)
T ss_dssp TTEEEEEEECC-----CTT
T ss_pred CCEEEEEEECCCCHhHHHH
Confidence 4678999999999998764
No 112
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.93 E-value=0.0086 Score=39.47 Aligned_cols=18 Identities=0% Similarity=-0.001 Sum_probs=14.5
Q ss_pred CeeEEEcCCCcccccCch
Q 045003 35 IKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 35 ~~itFiDTPGHeAFs~f~ 52 (93)
..+.++||||++.|..+.
T Consensus 68 ~~~~i~Dt~G~~~~~~~~ 85 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLR 85 (201)
T ss_dssp EEEEEEECCCSTTCSSSG
T ss_pred EEEEEEECCCCHHHHHHh
Confidence 367799999999987643
No 113
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.90 E-value=0.012 Score=39.13 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=29.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEc-CCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMS-TGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~-~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++.+. ....+.=|++.......+... +....+.+.||||++.|..+
T Consensus 36 Li~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (196)
T 3llu_A 36 IQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 85 (196)
T ss_dssp HHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT
T ss_pred HHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh
Confidence 44444442 222233345555555555553 34578999999999998653
No 114
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.0049 Score=40.17 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=14.1
Q ss_pred CCeeEEEcCCCcccccC
Q 045003 34 GIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~ 50 (93)
...+.++|||||+.|..
T Consensus 55 ~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPA 71 (199)
T ss_dssp EEEEEEEECCGGGSCHH
T ss_pred EEEEEEEeCCChHHhHH
Confidence 44799999999998764
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.88 E-value=0.0065 Score=44.08 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=34.3
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|+.+|.+.+...+..-|+|.+.-...+... +..+.++||||+..|..
T Consensus 16 TL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 16 TLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVA 63 (256)
T ss_dssp HHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC-
T ss_pred HHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccc
Confidence 3666776665555566688876666666663 66999999999998864
No 116
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0074 Score=39.48 Aligned_cols=25 Identities=8% Similarity=-0.098 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 25 AFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 25 A~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
...+.. ++..+.++||||++.|..+
T Consensus 52 ~~~~~~--~~~~~~i~Dt~G~~~~~~~ 76 (187)
T 1zj6_A 52 VEEIVI--NNTRFLMWDIGGQESLRSS 76 (187)
T ss_dssp CEEEEE--TTEEEEEEECCC----CGG
T ss_pred eEEEEE--CCEEEEEEECCCCHhHHHH
Confidence 344555 3688999999999988653
No 117
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.85 E-value=0.0061 Score=41.38 Aligned_cols=24 Identities=0% Similarity=0.004 Sum_probs=9.5
Q ss_pred EEEcCCCCeeEEEcCCCcccccCc
Q 045003 28 IGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+..++....+.++||||++.|..+
T Consensus 75 ~~~~~~~~~l~l~Dt~G~~~~~~~ 98 (214)
T 2j1l_A 75 LQVKGKPVHLHIWDTAGQDDYDRL 98 (214)
T ss_dssp EEETTEEEEEEEEEC---------
T ss_pred EEECCEEEEEEEEECCCchhhhHH
Confidence 344323347999999999988653
No 118
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.83 E-value=0.003 Score=48.28 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=14.3
Q ss_pred CeeEEEcCCCcccccC
Q 045003 35 IKFNFHNCEFYHRTSL 50 (93)
Q Consensus 35 ~~itFiDTPGHeAFs~ 50 (93)
..++|+|||||+.|..
T Consensus 75 ~~~~iiDtPGh~~~~~ 90 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA 90 (403)
T ss_dssp EEEEEEECCCCGGGHH
T ss_pred ceEEEEECCCcHHHHH
Confidence 5899999999999865
No 119
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.76 E-value=0.014 Score=39.83 Aligned_cols=51 Identities=2% Similarity=-0.077 Sum_probs=27.0
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchh
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFF 53 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~ 53 (93)
|+.++.+.........-+.-.. ...+..++....+.+.||||++.|..+..
T Consensus 43 L~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 93 (214)
T 3q3j_B 43 MLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRP 93 (214)
T ss_dssp HHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGG
T ss_pred HHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHH
Confidence 5666655444333222222221 12233333345789999999999877543
No 120
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.73 E-value=0.0074 Score=39.80 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=26.7
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
+|+.++.+........- |.......+.. +...+.++||||++.|..+
T Consensus 37 sli~~l~~~~~~~~~~~--t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~ 83 (188)
T 1zd9_A 37 TFVNVIASGQFNEDMIP--TVGFNMRKITK--GNVTIKLWDIGGQPRFRSM 83 (188)
T ss_dssp HHHHHHHHSCCCCSCCC--CCSEEEEEEEE--TTEEEEEEEECCSHHHHTT
T ss_pred HHHHHHHcCCCCCccCC--CCceeEEEEEe--CCEEEEEEECCCCHhHHHH
Confidence 35666665544322111 22222223333 5778999999999988763
No 121
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.65 E-value=0.0085 Score=44.33 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=30.4
Q ss_pred ChhhHHhhcCCcC-cccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 1 MISDALRQTSVVA-KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 1 sLLD~IR~t~Va~-~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+|+.+|-+.+++. ...-+.|.+.-...+.. +.+..++|+|||||..+.
T Consensus 25 TLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 25 TLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC
T ss_pred HHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc
Confidence 3677777766652 34445666544334433 127789999999997654
No 122
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.63 E-value=0.012 Score=38.40 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=18.3
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
..+.. ++.++.++||||++.|..+
T Consensus 58 ~~~~~--~~~~~~i~Dt~G~~~~~~~ 81 (181)
T 2h17_A 58 EEIVI--NNTRFLMWDIGGQESLRSS 81 (181)
T ss_dssp EEEEE--TTEEEEEEEESSSGGGTCG
T ss_pred EEEEE--CCEEEEEEECCCCHhHHHH
Confidence 34555 3678999999999988763
No 123
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.62 E-value=0.0078 Score=40.31 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.8
Q ss_pred CeeEEEcCCCcccccCch
Q 045003 35 IKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 35 ~~itFiDTPGHeAFs~f~ 52 (93)
..+.++||||++.|..+.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~ 78 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLK 78 (218)
T ss_dssp EEEEEEEECSGGGTSCCC
T ss_pred EEEEEEecCCchhhchHH
Confidence 469999999999987643
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.56 E-value=0.0078 Score=43.03 Aligned_cols=47 Identities=13% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.+|.+.....+..-|+|.......+... +..+.++||||+..|..
T Consensus 19 L~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 19 IFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp HHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCS
T ss_pred HHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCcccccc
Confidence 566666665555566778888777777763 67899999999998865
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.53 E-value=0.0022 Score=49.55 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=23.9
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
||+.+|-+...+ ..+.-|+|.+.-...+..+ +..+.++|||||
T Consensus 190 SLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~l~DT~G~ 233 (436)
T 2hjg_A 190 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTAGM 233 (436)
T ss_dssp HHHHHHHTSTTEEEC---------CCEEEEET--TEEEEETTHHHH
T ss_pred HHHHHHhCCCceeecCCCCceeeeeEEEEEEC--CeEEEEEECCCc
Confidence 366666655432 3444568888776677764 678999999999
No 126
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.52 E-value=0.0068 Score=38.37 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=13.8
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccC
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..+..++....+.+.||||++.|..
T Consensus 42 ~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 42 RRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEETTEEEEEEEECCCCC-----
T ss_pred EEEEECCeEEEEEEEECCCccccch
Confidence 3444543345788999999998864
No 127
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.50 E-value=0.019 Score=40.58 Aligned_cols=62 Identities=3% Similarity=-0.002 Sum_probs=30.9
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCchhhhh---cccEeEEe
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFFVQL---RNFVIVLR 64 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~mR~---RGa~iv~~ 64 (93)
|+.++.+........+-+.... ...+..++....+.++||||++.|..+..... .++.+|+.
T Consensus 171 li~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 235 (332)
T 2wkq_A 171 LLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFS 235 (332)
T ss_dssp HHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEE
T ss_pred HHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEe
Confidence 4555554444333333222222 23344432233566999999999876443322 33444444
No 128
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.46 E-value=0.0086 Score=41.03 Aligned_cols=44 Identities=7% Similarity=-0.087 Sum_probs=26.9
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
+|+.++.+......+..+.|+.+-...+.. ++..+.++||||+.
T Consensus 44 sLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 44 SFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLL 87 (228)
T ss_dssp HHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTT
T ss_pred HHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCc
Confidence 366677666655555667777766555555 36789999999993
No 129
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.0098 Score=38.53 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=30.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
|+..|-+........-|+|.+.....+.. ++..+.++||||++.|.
T Consensus 23 L~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 23 IFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp HHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCS
T ss_pred HHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccc
Confidence 55666554333334456676655556665 36789999999999885
No 130
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.44 E-value=0.013 Score=39.50 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=14.5
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
..+..+ +..+.++|||||+.|..+
T Consensus 62 ~~~~~~--~~~l~i~Dt~G~~~~~~~ 85 (198)
T 1f6b_A 62 EELTIA--GMTFTTFDLGGHIQARRV 85 (198)
T ss_dssp EEEEET--TEEEEEEEECC----CCG
T ss_pred EEEEEC--CEEEEEEECCCcHhhHHH
Confidence 345553 578999999999988763
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.44 E-value=0.028 Score=37.41 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
.+.. ++.++.++|||||+.|..+
T Consensus 61 ~~~~--~~~~~~i~Dt~G~~~~~~~ 83 (190)
T 1m2o_B 61 ELAI--GNIKFTTFDLGGHIQARRL 83 (190)
T ss_dssp EEEE--TTEEEEEEECCCSGGGTTS
T ss_pred EEEE--CCEEEEEEECCCCHHHHHH
Confidence 4444 3578999999999988753
No 132
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.34 E-value=0.012 Score=42.00 Aligned_cols=43 Identities=5% Similarity=-0.095 Sum_probs=27.7
Q ss_pred ChhhHHhhcCCcCc--ccCcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 1 MISDALRQTSVVAK--EAGGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 1 sLLD~IR~t~Va~~--EaGGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
+|+.+|.+.++... .+.|.|++.....+.. ++..++++||||.
T Consensus 36 Slin~l~~~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~liDTPG~ 80 (247)
T 3lxw_A 36 ATGNSILGQRRFFSRLGATSVTRACTTGSRRW--DKCHVEVVDTPDI 80 (247)
T ss_dssp HHHHHHHTSCCC---------CCSCEEEEEEE--TTEEEEEEECCSC
T ss_pred HHHHHHhCCCCccccCCCCCccccEEEEEEEE--CCcEEEEEECCCC
Confidence 36777777665543 3446888877777766 4789999999996
No 133
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.26 E-value=0.0031 Score=42.02 Aligned_cols=18 Identities=0% Similarity=-0.012 Sum_probs=14.2
Q ss_pred CCeeEEEcCCCcccccCc
Q 045003 34 GIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f 51 (93)
...+.++||||++.|..+
T Consensus 77 ~~~l~i~Dt~G~~~~~~~ 94 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRL 94 (204)
Confidence 446779999999988753
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.19 E-value=0.0092 Score=39.95 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.8
Q ss_pred ChhhHHhhcC-C-cCcccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 1 MISDALRQTS-V-VAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 1 sLLD~IR~t~-V-a~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
+|+.+|.+.. + .....-|.|+++..+.+... ++..++++|||||.
T Consensus 44 slin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 44 TAINVLCNQKRLAFASKTPGRTQHINYFSVGPA-AEPVAHLVDLPGYG 90 (223)
T ss_dssp HHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCT-TSCSEEEEECCCCC
T ss_pred HHHHHHhCCCcceeecCCCCcccceEEEEecCC-CCCcEEEEcCCCCC
Confidence 3666676654 2 23344567888776666532 56789999999973
No 135
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.16 E-value=0.017 Score=37.39 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=25.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
|+..+-+......+.-|+|.+.-.-.+... +..+.++||||++.|.
T Consensus 19 L~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 19 IFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLT 64 (165)
T ss_dssp HHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSS
T ss_pred HHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCC
Confidence 555555433322333456654444445553 5789999999999885
No 136
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.14 E-value=0.028 Score=37.18 Aligned_cols=48 Identities=0% Similarity=-0.031 Sum_probs=22.8
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
|+.++.+.........-+.-.. ...+..++....+.++||||++.|..
T Consensus 37 Li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 84 (187)
T 3c5c_A 37 LTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRN 84 (187)
T ss_dssp HHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCC
T ss_pred HHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchh
Confidence 5666665443333222221111 12333433345788999999998865
No 137
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.07 E-value=0.011 Score=37.97 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=12.0
Q ss_pred CCCeeEEEcCCCcccccCc
Q 045003 33 GGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f 51 (93)
++..+.++||||++.|..+
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~ 78 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPY 78 (183)
T ss_dssp TTEEEEEEEEC----CCTT
T ss_pred CCEEEEEEECCCCHhHHHH
Confidence 3678999999999988653
No 138
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.99 E-value=0.01 Score=40.02 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.2
Q ss_pred CCCeeEEEcCCCcccccCch
Q 045003 33 GGIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f~ 52 (93)
....+.++|||||+.|..+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~ 81 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLR 81 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCC
T ss_pred EEEEEEEEeCCChHHHhHHH
Confidence 35679999999999987643
No 139
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.97 E-value=0.015 Score=36.66 Aligned_cols=25 Identities=4% Similarity=-0.174 Sum_probs=11.4
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
.+...+....+.+.||||++.|..+
T Consensus 41 ~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 41 SIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp EEEETTEEEEEEEEECC--------
T ss_pred EEEECCEEEEEEEEECCCCccchhh
Confidence 3344434557899999999998653
No 140
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.81 E-value=0.013 Score=37.67 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=15.1
Q ss_pred CCeeEEEcCCCcccccCch
Q 045003 34 GIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f~ 52 (93)
...+.++|||||+.|..+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEECCSCCSCSHHH
T ss_pred ceEEEEEeCCChHHHHHHH
Confidence 3478999999999887643
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.68 E-value=0.0074 Score=48.20 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=29.5
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
+|+.+|.+...+ ..+..|+|.++-...+... +..++++||||+..+
T Consensus 239 SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 239 SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRET 285 (462)
T ss_dssp HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC-------
T ss_pred HHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccc
Confidence 467777665433 5566889999988888874 788999999998655
No 142
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.58 E-value=0.019 Score=36.38 Aligned_cols=21 Identities=0% Similarity=-0.116 Sum_probs=10.6
Q ss_pred EEEcCCCCeeEEEcCCCcccc
Q 045003 28 IGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeAF 48 (93)
+..++....+.++||||++.+
T Consensus 45 ~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 45 LTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp EEETTEEEEEEEECCC-----
T ss_pred EEECCEEEEEEEEecCCCCcc
Confidence 444323347899999999984
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.44 E-value=0.031 Score=41.60 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=25.9
Q ss_pred ChhhHHhhcCCcC-cccCcceeeecceEEEEcCCCCeeEEEcCCCccc
Q 045003 1 MISDALRQTSVVA-KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 1 sLLD~IR~t~Va~-~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeA 47 (93)
+|+.+|-+.+++. ...-+.|.+.--..+.. ++..+.|+||||++.
T Consensus 22 TLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 22 TLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHK 67 (301)
T ss_dssp HHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCC
T ss_pred HHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccc
Confidence 3677777666542 22224454421112222 477899999999876
No 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.32 E-value=0.019 Score=46.04 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=17.1
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+|+.+|.+...+ ..+.-|+|.+.-...+... +..++++||||++.|.
T Consensus 248 SLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~ 295 (476)
T 3gee_A 248 TLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAG 295 (476)
T ss_dssp HHHHHCC------------------CEEEEET--TEEEEEEC--------
T ss_pred HHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcch
Confidence 466777665432 4456688999888888874 7789999999998765
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.29 E-value=0.071 Score=41.15 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=26.6
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
|+.++-+...+...+ .+|........++..+.++||||++.|..+
T Consensus 338 Ll~~l~~~~~~~~~~-----T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 382 (497)
T 3lvq_E 338 ILYKLKLGQSVTTIP-----TVGFNVETVTYKNVKFNVWDVGGQDKIRPL 382 (497)
T ss_dssp HHHHHHHSSCCCCCC-----CSSEEEEEEESSSCEEEEEEECCCGGGSGG
T ss_pred HHHHHhcCCCCCcCC-----ccceeEEEEEeCCEEEEEEECCCcHHHHHH
Confidence 555555544332221 333333333335789999999999998763
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.27 E-value=0.012 Score=45.60 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=29.2
Q ss_pred ChhhHHhhcC-CcCcccCcceeeecceEEEEcCCCCeeEEEcCCC----------cccccC
Q 045003 1 MISDALRQTS-VVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEF----------YHRTSL 50 (93)
Q Consensus 1 sLLD~IR~t~-Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPG----------HeAFs~ 50 (93)
+|+.++.+.. ....+.-|+|.+.-...+... +.+++++|||| +|.|+.
T Consensus 210 slin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 210 SLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp HHHHHHHTSTTEEECC------CTTSEEEEET--TEEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred HHHHHHhCCCccccCCCCCeEEEEEEEEEEEC--CceEEEEECCCCCcCcccchHHHHHHH
Confidence 3566666443 333455578888877777774 67999999999 677765
No 147
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.20 E-value=0.012 Score=37.89 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=25.2
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
+|+.++.+........-|+|.++..+.+ .++.++||||+
T Consensus 16 sli~~l~~~~~~~~~~~~~t~~~~~~~~------~~~~l~Dt~G~ 54 (190)
T 2cxx_A 16 TLIYRLTGKKVRRGKRPGVTRKIIEIEW------KNHKIIDMPGF 54 (190)
T ss_dssp HHHHHHHSCCCSSSSSTTCTTSCEEEEE------TTEEEEECCCB
T ss_pred HHHHHHhCcCCccCCCCCccceeEEEec------CCEEEEECCCc
Confidence 3666676655555545577776544333 17999999993
No 148
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.03 E-value=0.036 Score=36.47 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.1
Q ss_pred CCCeeEEEcCCCcccccC
Q 045003 33 GGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~ 50 (93)
++..+.+.||||++.|..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~ 75 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRP 75 (181)
T ss_dssp TTEEEEEEECSSCGGGHH
T ss_pred CCEEEEEEECCCCHHHHH
Confidence 367899999999998854
No 149
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.042 Score=36.20 Aligned_cols=45 Identities=0% Similarity=-0.078 Sum_probs=23.8
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeA 47 (93)
|+.++.+.........-++-.. ...+..++...++.|+||||++.
T Consensus 44 li~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 44 LVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp HHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred HHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 5666665544333222222111 12344433345799999999986
No 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.032 Score=36.34 Aligned_cols=34 Identities=3% Similarity=0.110 Sum_probs=23.4
Q ss_pred CCCeeEEEcCCCcccccCchh--hh-----hcccEeEEecc
Q 045003 33 GGIKFNFHNCEFYHRTSLFFF--VQ-----LRNFVIVLRKN 66 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f~~--mR-----~RGa~iv~~~~ 66 (93)
....+.|+|||||+.|..... ++ ..++.+|++-.
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETT
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 356899999999999865322 22 35677777654
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.56 E-value=0.034 Score=39.86 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=22.5
Q ss_pred ChhhHHhhcCCcCcccCcc------eeeecceEEEEcCCC--CeeEEEcCCCcccc
Q 045003 1 MISDALRQTSVVAKEAGGI------TQHVGAFVIGMSTGG--IKFNFHNCEFYHRT 48 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGI------TQhIGA~~V~~~~~~--~~itFiDTPGHeAF 48 (93)
+|+.+|.++++...+..+. |-.+-........++ .+++++||||+..+
T Consensus 23 TLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 23 TLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp HHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred HHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 3667777777666654322 222222333333223 38999999998543
No 152
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=93.37 E-value=0.066 Score=43.03 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=35.6
Q ss_pred ChhhHHhhcCC-cCcccCcceeeecceEEEEcCCCCeeEEEcCCCcc-ccc
Q 045003 1 MISDALRQTSV-VAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH-RTS 49 (93)
Q Consensus 1 sLLD~IR~t~V-a~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe-AFs 49 (93)
|||.+|.+... ...+.-|+|.++-...+... +..++++||||++ .+.
T Consensus 258 SLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 258 TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETN 306 (482)
T ss_dssp HHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCC
T ss_pred HHHHHHHCCCCCccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccch
Confidence 47777776653 24556689999888888884 7789999999998 553
No 153
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.04 E-value=0.13 Score=33.69 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=29.5
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+|+.+|-+...+ ..+.-|+|.+.-.-.+... +..+.++||||.+.+.
T Consensus 19 tLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 19 SLLNALAGREAAIVTDIAGTTRDVLREHIHID--GMPLHIIDTAGLREAS 66 (172)
T ss_dssp HHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--TEEEEEEECCCCSCCS
T ss_pred HHHHHHhCCCcceeeCCCCceeceeeEEEEEC--CeEEEEEECCCcccch
Confidence 356666654322 2344567766655556663 5679999999987653
No 154
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.00 E-value=0.085 Score=37.33 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=19.6
Q ss_pred CCeeEEEcCCCcccccCchhhhhcccEe
Q 045003 34 GIKFNFHNCEFYHRTSLFFFVQLRNFVI 61 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f~~mR~RGa~i 61 (93)
.-++.+.||+|.+.|..+..+--|++.+
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccE
Confidence 3467899999999998765444444433
No 155
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.86 E-value=0.092 Score=38.61 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.9
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
.=|.|..+--..+... +..++.+.||||++.|
T Consensus 34 ~~~~Ti~~~~~~~~~~-~~~~l~i~Dt~G~~~~ 65 (307)
T 3r7w_A 34 RLGATIDVEHSHLRFL-GNMTLNLWDCGGQDVF 65 (307)
T ss_dssp GCCCCCSEEEEEEEET-TTEEEEEEEECCSHHH
T ss_pred CcCCccceEEEEEEeC-CceEEEEEECCCcHHH
Confidence 4566777665566554 4678999999999998
No 156
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.67 E-value=0.041 Score=36.99 Aligned_cols=32 Identities=3% Similarity=-0.185 Sum_probs=19.9
Q ss_pred cceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 18 GITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 18 GITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
++|.....-.+..++....+.+.||||++.|.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 55 ENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG 86 (195)
T ss_dssp TSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred CcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence 34544444445554333467788999999874
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.55 E-value=0.15 Score=33.85 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=16.7
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
.+...+....+.+.||||++.|..+
T Consensus 46 ~i~~~g~~~~~~i~Dt~g~~~~~~~ 70 (199)
T 2f9l_A 46 SIQVDGKTIKAQIWDTAGQERYRRI 70 (199)
T ss_dssp EEEETTEEEEEEEEECSSGGGTTCC
T ss_pred EEEECCEEEEEEEEECCCchhhhhh
Confidence 3444322346778999999988653
No 158
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.24 E-value=0.059 Score=34.99 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=17.9
Q ss_pred hhhHHhhcC-Cc-CcccCcceeeecceEEEEcCCCCeeEEEcCCC
Q 045003 2 ISDALRQTS-VV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEF 44 (93)
Q Consensus 2 LLD~IR~t~-Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPG 44 (93)
|+.+|.+.. +. ....-|.|+++..+.+ +.++.++||||
T Consensus 39 li~~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~l~Dt~G 78 (195)
T 1svi_A 39 FINSLINRKNLARTSSKPGKTQTLNFYII-----NDELHFVDVPG 78 (195)
T ss_dssp HHHHHHTC-------------CCEEEEEE-----TTTEEEEECCC
T ss_pred HHHHHhCCCCccccCCCCCceeeEEEEEE-----CCcEEEEECCC
Confidence 556665543 11 1233456666554433 34799999999
No 159
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=92.15 E-value=0.051 Score=42.88 Aligned_cols=19 Identities=11% Similarity=-0.047 Sum_probs=16.0
Q ss_pred CCeeEEEcCCCcccccCch
Q 045003 34 GIKFNFHNCEFYHRTSLFF 52 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f~ 52 (93)
...+.+.||||++.|..+.
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp TCEEEEECCCSCCTTTTTC
T ss_pred eEEEEEEECCcHHHHHHHH
Confidence 5789999999999987643
No 160
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.10 E-value=0.14 Score=32.73 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=20.2
Q ss_pred EEEcCCCCeeEEEcCCCcccccCchhhh-hcccEeEEe
Q 045003 28 IGMSTGGIKFNFHNCEFYHRTSLFFFVQ-LRNFVIVLR 64 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeAFs~f~~mR-~RGa~iv~~ 64 (93)
+..++....+.+.||||++.+.. +| ..++.+|+.
T Consensus 47 ~~~~~~~~~l~i~Dt~G~~~~~~---~~~~d~~ilv~D 81 (178)
T 2iwr_A 47 MLVDGQTHLVLIREEAGAPDAKF---SGWADAVIFVFS 81 (178)
T ss_dssp EEETTEEEEEEEEECSSSCCHHH---HHHCSEEEEEEE
T ss_pred EEECCEEEEEEEEECCCCchhHH---HHhCCEEEEEEE
Confidence 33432345688999999987542 33 344444444
No 161
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.58 E-value=0.12 Score=33.04 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=21.6
Q ss_pred hhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCC
Q 045003 2 ISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEF 44 (93)
Q Consensus 2 LLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPG 44 (93)
|+.+|-+.... ....-|.|+.+..+.. +.++.++||||
T Consensus 39 li~~l~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~i~Dt~G 77 (195)
T 3pqc_A 39 LLNALFNRKIAFVSKTPGKTRSINFYLV-----NSKYYFVDLPG 77 (195)
T ss_dssp HHHHHHTSCCSCCCSSCCCCCCEEEEEE-----TTTEEEEECCC
T ss_pred HHHHHHcCccccccCCCCCccCeEEEEE-----CCcEEEEECCC
Confidence 56666554422 2233455655443222 45799999999
No 162
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.17 E-value=0.11 Score=36.95 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=19.2
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCccc
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeA 47 (93)
+||+-++-..++..+ +...++|+||||+..
T Consensus 114 ~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~ 143 (315)
T 1jwy_B 114 KGISAQPINLKIYSP-HVVNLTLVDLPGITK 143 (315)
T ss_dssp --CCCCCEEEEEEET-TSCSEEEEECCCCC-
T ss_pred CCccCccEEEEEecC-CCCCcEEEECCCCcc
Confidence 366655555555443 567899999999863
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.79 E-value=0.11 Score=34.10 Aligned_cols=26 Identities=4% Similarity=-0.165 Sum_probs=17.6
Q ss_pred CCCeeEEEcCCCcccccCchhhhhcc
Q 045003 33 GGIKFNFHNCEFYHRTSLFFFVQLRN 58 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f~~mR~RG 58 (93)
....+.+.||||.+.|..+...-.++
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred CceEEEEEecCCCHHHHHhhHHHccC
Confidence 35689999999999887654433333
No 164
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.77 E-value=0.089 Score=35.07 Aligned_cols=33 Identities=3% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCeeEEEcCCCcccccCch--hhh-----hcccEeEEecc
Q 045003 34 GIKFNFHNCEFYHRTSLFF--FVQ-----LRNFVIVLRKN 66 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f~--~mR-----~RGa~iv~~~~ 66 (93)
...+.++|||||+.|.... .+| ..++.+|++-.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECC
Confidence 5689999999999985422 122 35677777655
No 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.68 E-value=0.51 Score=31.13 Aligned_cols=23 Identities=4% Similarity=-0.210 Sum_probs=15.6
Q ss_pred EEEEcCCCCeeEEEcCCCccccc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs 49 (93)
.+..++....+.+.||||++.|.
T Consensus 59 ~~~~~~~~~~l~i~Dt~G~~~~~ 81 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEGGPPELQ 81 (184)
T ss_dssp EEEETTEEEEEEEEECSSSCCHH
T ss_pred EEEECCEEEEEEEEECCCChhhh
Confidence 34443233467789999999876
No 166
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.49 E-value=0.18 Score=38.87 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=23.3
Q ss_pred hhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCccc
Q 045003 2 ISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 2 LLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeA 47 (93)
|+.+|-+.+.+ ....=|+|.+.--..+.+. +..+.++||||.+.
T Consensus 17 L~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 17 LFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGVFD 61 (439)
T ss_dssp HHHHHHC--------------CCSEEEEEET--TEEEEEEECTTTTS
T ss_pred HHHHHhCCCCceecCCCCCccceeeEEEEEC--CeEEEEEECCCccc
Confidence 56666555432 2334478887776777774 67899999999764
No 167
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.31 E-value=0.044 Score=42.25 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=17.1
Q ss_pred hhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 2 ISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 2 LLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
|+.+|-+...+ ....=|.|.+.-...+.. ++..+.++||||++
T Consensus 19 L~n~l~~~~~~~v~~~~g~T~d~~~~~~~~--~~~~~~l~DT~G~~ 62 (436)
T 2hjg_A 19 IFNRIAGERISIVEDTPGVTRDRIYSSAEW--LNYDFNLIDTGGID 62 (436)
T ss_dssp HHHHHEEEECC-----------CEEEECTT--CSSCCEEEC-----
T ss_pred HHHHHhCCCceeecCCCCCccceEEEEEEE--CCceEEEEECCCCC
Confidence 55666554433 123346776654444444 46789999999986
No 168
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.30 E-value=0.14 Score=37.59 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=27.8
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
|+.++-+.+...+..-|+|...- ...+.. +.++.++||||++.|+
T Consensus 19 L~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 19 LFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp HHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSS
T ss_pred HHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccC
Confidence 56666655433334446665432 222332 6689999999999886
No 169
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.31 E-value=0.26 Score=36.38 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=19.6
Q ss_pred ChhhHHhhcCC-cCcccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 1 MISDALRQTSV-VAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 1 sLLD~IR~t~V-a~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
+|+.+|.+.++ ..+..-|.|.+..- +.. +.++.++||||--
T Consensus 135 sliN~l~~~~~~~~~~~~g~T~~~~~--~~~---~~~~~l~DtpG~~ 176 (282)
T 1puj_A 135 TLINRLAKKNIAKTGDRPGITTSQQW--VKV---GKELELLDTPGIL 176 (282)
T ss_dssp HHHHHHHTSCCC------------CC--EEE---TTTEEEEECCCCC
T ss_pred HHHHHHhcCceeecCCCCCeeeeeEE--EEe---CCCEEEEECcCcC
Confidence 46777776653 33344467877653 333 4579999999964
No 170
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.83 E-value=0.48 Score=39.57 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=28.7
Q ss_pred ChhhHHhhcCCcCcccC----cceeeecceEEEEc-CCCCeeEEEcCCCccc
Q 045003 1 MISDALRQTSVVAKEAG----GITQHVGAFVIGMS-TGGIKFNFHNCEFYHR 47 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaG----GITQhIGA~~V~~~-~~~~~itFiDTPGHeA 47 (93)
+|+.+|.+.+++- ..| +.|..|-.+.++.+ ..+..++++||||=-.
T Consensus 53 tLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 53 YLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp HHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred HHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4788888776543 333 34444444444443 3467899999999653
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=86.42 E-value=0.075 Score=41.19 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=13.6
Q ss_pred cceeeecceEEEEcCCCCeeEEEcCCC
Q 045003 18 GITQHVGAFVIGMSTGGIKFNFHNCEF 44 (93)
Q Consensus 18 GITQhIGA~~V~~~~~~~~itFiDTPG 44 (93)
|+|.+.-...+.. .+..+.++||||
T Consensus 56 g~t~~~~~~~~~~--~~~~~~liDT~G 80 (456)
T 4dcu_A 56 GVTRDRIYSSAEW--LNYDFNLIDTGG 80 (456)
T ss_dssp -----CEEEECTT--CSSCCEEECCCC
T ss_pred CcceeEEEEEEEE--CCceEEEEECCC
Confidence 4555443333332 477899999999
No 172
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.12 E-value=0.94 Score=29.98 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=16.7
Q ss_pred EEEEcCCCCeeEEEcCCCcccccCchh
Q 045003 27 VIGMSTGGIKFNFHNCEFYHRTSLFFF 53 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeAFs~f~~ 53 (93)
++..++....+.+.||||.+.|..+..
T Consensus 70 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~ 96 (191)
T 1oix_A 70 SIQVDGKTIKAQIWDTAGLERYRAITS 96 (191)
T ss_dssp EEEETTEEEEEEEEEECSCCSSSCCCH
T ss_pred EEEECCEEEEEEEEECCCCcchhhhhH
Confidence 344432223456799999998876443
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=85.89 E-value=0.45 Score=35.55 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=29.5
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
|+.+|-+.........+.|+++....+.. ++..+.++||||+..+
T Consensus 183 Lin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 183 LLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDR 227 (357)
T ss_dssp HHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSS
T ss_pred HHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCcccc
Confidence 55666555443344456777766555555 3678999999999654
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=85.84 E-value=0.39 Score=36.86 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=22.2
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
|+..|-+..+...+.-+.|.+.-.-.+.++ +..+.++||||+
T Consensus 195 Lln~L~~~~~~~~~~~~~T~d~~~~~i~~~--g~~v~l~DT~G~ 236 (364)
T 2qtf_A 195 LFNSLTGLTQKVDTKLFTTMSPKRYAIPIN--NRKIMLVDTVGF 236 (364)
T ss_dssp HHHHHHCC-----------CCSCEEEEEET--TEEEEEEECCCB
T ss_pred HHHHHHCCCccccCCcccccCCEEEEEEEC--CEEEEEEeCCCc
Confidence 556665554433344466766655566664 578999999998
No 175
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=82.30 E-value=0.47 Score=36.03 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=7.0
Q ss_pred eeEEEcCCCc-------ccccCc
Q 045003 36 KFNFHNCEFY-------HRTSLF 51 (93)
Q Consensus 36 ~itFiDTPGH-------eAFs~f 51 (93)
.++++||||+ +.|..+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i 118 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTI 118 (361)
T ss_dssp EEEEEC--------------CCT
T ss_pred ceEEEEeccccccCccHHHHHHH
Confidence 7999999999 666553
No 176
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=81.50 E-value=0.65 Score=37.64 Aligned_cols=13 Identities=0% Similarity=-0.220 Sum_probs=11.2
Q ss_pred CeeEEEcCCCccc
Q 045003 35 IKFNFHNCEFYHR 47 (93)
Q Consensus 35 ~~itFiDTPGHeA 47 (93)
..++|+||||+..
T Consensus 154 ~~l~lIDTPG~~~ 166 (550)
T 2qpt_A 154 ESISIIDTPGILS 166 (550)
T ss_dssp HHCEEEECCCBCC
T ss_pred CCEEEEECcCCCC
Confidence 3799999999975
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=81.25 E-value=1.1 Score=31.27 Aligned_cols=14 Identities=0% Similarity=-0.095 Sum_probs=11.6
Q ss_pred CCCeeEEEcCCCcc
Q 045003 33 GGIKFNFHNCEFYH 46 (93)
Q Consensus 33 ~~~~itFiDTPGHe 46 (93)
+...++|+||||+.
T Consensus 123 ~~~~l~lvDtpG~~ 136 (299)
T 2aka_B 123 HVLNLTLVDLPGMT 136 (299)
T ss_dssp TCCSEEEEECCCBC
T ss_pred CCCCceEEeCCCCC
Confidence 35789999999964
No 178
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=80.37 E-value=0.58 Score=35.71 Aligned_cols=42 Identities=7% Similarity=-0.029 Sum_probs=25.3
Q ss_pred hhhHHhhc------CCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 2 ISDALRQT------SVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 2 LLD~IR~t------~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
|+.+|.+. .+..+..-|.|++.-- ++. +..+.++||||-...
T Consensus 178 liN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~---~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 178 FINRIIEEATGKGNVITTSYFPGTTLDMIE--IPL---ESGATLYDTPGIINH 225 (369)
T ss_dssp HHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EEC---STTCEEEECCSCCCC
T ss_pred HHHHHHhhccCCccceeecCCCCeEEeeEE--EEe---CCCeEEEeCCCcCcH
Confidence 55566554 3334445568877543 333 335999999996543
No 179
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=79.42 E-value=1.2 Score=34.99 Aligned_cols=43 Identities=21% Similarity=0.003 Sum_probs=27.7
Q ss_pred ChhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 1 MISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 1 sLLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
+|+-+|-++++.....=+.|-+.---.+.+ ++..+.|+||||-
T Consensus 87 TL~n~Lt~~~~~v~~~pftT~~~~~g~~~~--~~~~i~l~D~pGl 129 (376)
T 4a9a_A 87 TLLSKLTGTESEAAEYEFTTLVTVPGVIRY--KGAKIQMLDLPGI 129 (376)
T ss_dssp HHHHHHHSBCCCGGGTCSSCCCEEEEEEEE--TTEEEEEEECGGG
T ss_pred HHHHHHhCCCCcccCCCCceeeeeeEEEEe--CCcEEEEEeCCCc
Confidence 367777776654444445555443334555 3789999999995
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=78.76 E-value=1.7 Score=32.24 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=19.9
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
.|++.+.-..++..+ ....++++||||...+
T Consensus 119 ~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~ 149 (360)
T 3t34_A 119 KAISSVPIHLSIYSP-NVVNLTLIDLPGLTKV 149 (360)
T ss_dssp CCCCCSCEEEEEEET-TSCSEEEEECCCBCSS
T ss_pred CCcccceEEEEEeCC-CCCCeEEEECCCCCcC
Confidence 344444434444432 5678999999998776
No 181
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=76.87 E-value=0.5 Score=36.17 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=37.0
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCCCCeeEEEcCCCccc----ccC----chh--hhhcccEeEEecccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHR----TSL----FFF--VQLRNFVIVLRKNNC 68 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeA----Fs~----f~~--mR~RGa~iv~~~~~~ 68 (93)
||.+|.+.+......-..|+......+.++ +...+++.||||+.. +.. |++ -|++.+.+|+.-.+.
T Consensus 174 Lln~L~~~~~~i~~~~ftTl~p~~g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~ 249 (342)
T 1lnz_A 174 LLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGL 249 (342)
T ss_dssp HHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCS
T ss_pred HHHHHHcCCCccccCCccccCceEEEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcc
Confidence 556665544332333455665554455554 347899999999632 111 111 135677777776554
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=76.80 E-value=0.68 Score=34.62 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=13.0
Q ss_pred CCCeeEEEcCCCcccc
Q 045003 33 GGIKFNFHNCEFYHRT 48 (93)
Q Consensus 33 ~~~~itFiDTPGHeAF 48 (93)
++..++|+||||+..+
T Consensus 147 ~~~~i~liDTpG~~~~ 162 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS 162 (341)
T ss_dssp TTCSEEEEEEECCTTH
T ss_pred cCCCEEEEeCCCccch
Confidence 3678999999997654
No 183
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=75.12 E-value=1.1 Score=32.70 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=22.1
Q ss_pred ChhhHHhhcCCc-CcccCcceeeecceEEEEcCCCCeeEEEcCCCcccc
Q 045003 1 MISDALRQTSVV-AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRT 48 (93)
Q Consensus 1 sLLD~IR~t~Va-~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAF 48 (93)
+|+.+|.+...+ .+..-|.|.+.- .+.. +.++.++||||-...
T Consensus 114 slin~l~~~~~~~~~~~~g~T~~~~--~~~~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 114 TIINKLKGKRASSVGAQPGITKGIQ--WFSL---ENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHHHTTCC----------CCSC--EEEC---TTSCEEESSCEECCC
T ss_pred HHHHHHhcccccccCCCCCCccceE--EEEe---CCCEEEEECCCcccC
Confidence 366677665542 233446776653 2332 458999999997654
No 184
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=74.25 E-value=2.5 Score=33.60 Aligned_cols=48 Identities=8% Similarity=-0.050 Sum_probs=18.2
Q ss_pred hhhHHhhcCCcCcccCcceeeecceEEEEcCC---------------CCeeEEEcCCCccccc
Q 045003 2 ISDALRQTSVVAKEAGGITQHVGAFVIGMSTG---------------GIKFNFHNCEFYHRTS 49 (93)
Q Consensus 2 LLD~IR~t~Va~~EaGGITQhIGA~~V~~~~~---------------~~~itFiDTPGHeAFs 49 (93)
|+.+|.+.++.....-+.|.....-.+..++. ...+.|+||||...+.
T Consensus 38 L~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 38 FFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp HHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred HHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 56666665543333344555444334444311 2369999999988754
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=73.83 E-value=2.7 Score=31.25 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=17.0
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
.||....-..++..+ +...++|+||||.
T Consensus 113 ~gi~~~~~~~~i~~~-~~~~l~lvDTPG~ 140 (353)
T 2x2e_A 113 KGISPVPINLRVYSP-HVLNLTLVDLPGM 140 (353)
T ss_dssp TCCCCCCEEEEEEET-TCCSEEEEECCCB
T ss_pred CCcccCceEEEEecC-CCCCcEEEECCCC
Confidence 344443333444332 4578999999995
No 186
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=73.77 E-value=0.74 Score=35.22 Aligned_cols=31 Identities=6% Similarity=-0.078 Sum_probs=16.1
Q ss_pred cccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 14 KEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 14 ~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
...-|.|++...+ +. ...+.++||||-....
T Consensus 195 ~~~~gtT~~~~~~--~~---~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 195 SHFPGTTLDLIDI--PL---DEESSLYDTPGIINHH 225 (368)
T ss_dssp ECCC----CEEEE--ES---SSSCEEEECCCBCCTT
T ss_pred CCCCCeecceEEE--Ee---cCCeEEEeCCCcCcHH
Confidence 3344677665443 33 2349999999975443
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=72.51 E-value=1.5 Score=34.26 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=12.7
Q ss_pred CeeEEEcCCCccccc
Q 045003 35 IKFNFHNCEFYHRTS 49 (93)
Q Consensus 35 ~~itFiDTPGHeAFs 49 (93)
..+.|+||||...+.
T Consensus 66 ~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 66 TTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEEECCSCCTTH
T ss_pred eEEEEEECCCCcccc
Confidence 579999999998763
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=72.40 E-value=2.1 Score=32.84 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=22.7
Q ss_pred hhhHHhhcCC-cCcccCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 2 ISDALRQTSV-VAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 2 LLD~IR~t~V-a~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
|+..|-+... ...+.-|+|.+.-...+... +..+.++||||.+
T Consensus 196 Lln~l~g~~~~~v~~~~gtT~d~~~~~i~~~--g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 196 LFNAILNKERALVSPIPGTTRDPVDDEVFID--GRKYVFVDTAGLR 239 (439)
T ss_dssp HHHHHHTSTTEEECCCC------CCEEEEET--TEEEEESSCSCC-
T ss_pred HHHHHhCCcccccCCCCCCcCCceEEEEEEC--CEEEEEEECCCCc
Confidence 5555554332 12334467776656667664 6689999999984
No 189
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=71.49 E-value=2.3 Score=27.77 Aligned_cols=48 Identities=10% Similarity=-0.054 Sum_probs=32.9
Q ss_pred CCCeeEEEc---CCCcccccCchhhhhcccEeE-----Eeccccc-----------ceeeeeccccc
Q 045003 33 GGIKFNFHN---CEFYHRTSLFFFVQLRNFVIV-----LRKNNCQ-----------GTYLFPWSYSE 80 (93)
Q Consensus 33 ~~~~itFiD---TPGHeAFs~f~~mR~RGa~iv-----~~~~~~~-----------~~~~~~~~~~~ 80 (93)
++++++++| |-|...-.....+++.|+..| .+|..++ .-++|||...|
T Consensus 82 ~gk~VllVDDvitTG~Tl~~a~~~L~~~ga~~v~~~~l~~~~~~~~~~dy~g~~~~~~~vfpW~~~~ 148 (153)
T 1vdm_A 82 KDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFP 148 (153)
T ss_dssp BTCEEEEEEEEESSCHHHHHHHHHHHTTTBSEEEEEEEEECTTCSSCCSBBCEECSSEEECTTCCCC
T ss_pred CCCEEEEEecccCChHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCCCceEEEEecCCeEEeCCcCcc
Confidence 467888888 788776665567888887655 5554332 12789998754
No 190
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=67.38 E-value=4.7 Score=26.62 Aligned_cols=21 Identities=0% Similarity=-0.175 Sum_probs=12.2
Q ss_pred EEEEcCCCCeeEEEcCCCccc
Q 045003 27 VIGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 27 ~V~~~~~~~~itFiDTPGHeA 47 (93)
.+..++....+.++||+|.+.
T Consensus 48 ~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 48 TLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEETTEEEEEEEECCCCC--
T ss_pred EEEECCeEEEEEEEEeccCcc
Confidence 444542233567899999876
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=66.91 E-value=3.4 Score=35.75 Aligned_cols=28 Identities=7% Similarity=-0.039 Sum_probs=19.2
Q ss_pred CcceeeecceEEEEcCCCCeeEEEcCCCc
Q 045003 17 GGITQHVGAFVIGMSTGGIKFNFHNCEFY 45 (93)
Q Consensus 17 GGITQhIGA~~V~~~~~~~~itFiDTPGH 45 (93)
-|++.+.-..++..+ +...++|+||||-
T Consensus 133 ~~is~~~i~l~I~~P-~~~qL~LVDTPGi 160 (772)
T 3zvr_A 133 KGISPVPINLRVYSP-HVLNLTLVDLPGM 160 (772)
T ss_dssp TCCCSCCEEEEEEET-TCCSEEEEECCCC
T ss_pred CcccccceEEEEecC-CCCceEEEECCCc
Confidence 355555545555554 6778999999994
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=65.32 E-value=2.8 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=14.4
Q ss_pred cCcceeeecceEEEEcCCCCeeEEEcCCCcc
Q 045003 16 AGGITQHVGAFVIGMSTGGIKFNFHNCEFYH 46 (93)
Q Consensus 16 aGGITQhIGA~~V~~~~~~~~itFiDTPGHe 46 (93)
.-|.|...+.+.+. + ++.++||||+.
T Consensus 58 ~~G~~~~~~~~~~~----~-~~~l~Dt~G~~ 83 (210)
T 1pui_A 58 TPGRTQLINLFEVA----D-GKRLVDLPGYG 83 (210)
T ss_dssp -----CCEEEEEEE----T-TEEEEECCCCC
T ss_pred CCccceeeEEEEec----C-CEEEEECcCCc
Confidence 34566666544432 2 68899999985
No 193
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=59.63 E-value=2.8 Score=34.87 Aligned_cols=13 Identities=0% Similarity=-0.120 Sum_probs=10.9
Q ss_pred CeeEEEcCCCccc
Q 045003 35 IKFNFHNCEFYHR 47 (93)
Q Consensus 35 ~~itFiDTPGHeA 47 (93)
..++++||||+..
T Consensus 174 ~~l~LiDTPGl~~ 186 (695)
T 2j69_A 174 KGIEIVDSPGLND 186 (695)
T ss_dssp TTEEEEECCCHHH
T ss_pred CCeEEEECCCCCc
Confidence 5799999999654
No 194
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=56.34 E-value=10 Score=29.04 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=17.4
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccC
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..+.. +..++.+.||+|++.|..
T Consensus 186 ~~~~~--~~~~l~iwDt~GQe~~r~ 208 (353)
T 1cip_A 186 THFTF--KDLHFKMFDVGGQRSERK 208 (353)
T ss_dssp EEEEE--TTEEEEEEEECCSGGGGG
T ss_pred EEEee--CCeeEEEEeCCCchhhhH
Confidence 34444 367899999999998865
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=56.08 E-value=6.2 Score=30.59 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=7.9
Q ss_pred CeeEEEcCCCcccc
Q 045003 35 IKFNFHNCEFYHRT 48 (93)
Q Consensus 35 ~~itFiDTPGHeAF 48 (93)
..+.|+||||+..+
T Consensus 71 ~~i~lvDtpG~~~~ 84 (397)
T 1wxq_A 71 IPVKMVDVAGLVPG 84 (397)
T ss_dssp EEEEEEECC-----
T ss_pred EEEEEEECCCcccc
Confidence 36999999998643
No 196
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=52.77 E-value=7.8 Score=29.78 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=12.6
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccC
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
..+.. +..++.+.||||++.|..
T Consensus 194 ~~~~~--~~~~l~i~Dt~Gq~~~r~ 216 (362)
T 1zcb_A 194 YDFEI--KNVPFKMVDVGGQRSERK 216 (362)
T ss_dssp EEEEE--TTEEEEEEEECC------
T ss_pred EEeee--CCeEEEEEeccchhhhhh
Confidence 34444 367899999999998864
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=51.63 E-value=4.9 Score=27.42 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=11.7
Q ss_pred CeeEEEcCCCcccc
Q 045003 35 IKFNFHNCEFYHRT 48 (93)
Q Consensus 35 ~~itFiDTPGHeAF 48 (93)
..++|+||||...+
T Consensus 109 ~d~iiiDtpG~~~~ 122 (262)
T 1yrb_A 109 NDYVLIDTPGQMET 122 (262)
T ss_dssp CSEEEEECCSSHHH
T ss_pred CCEEEEeCCCccch
Confidence 47999999998754
No 198
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=50.28 E-value=7.2 Score=27.00 Aligned_cols=20 Identities=0% Similarity=-0.183 Sum_probs=13.3
Q ss_pred EEEcCCCCeeEEEcCCCccc
Q 045003 28 IGMSTGGIKFNFHNCEFYHR 47 (93)
Q Consensus 28 V~~~~~~~~itFiDTPGHeA 47 (93)
+..++...++.++||+|.+.
T Consensus 80 i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 80 LMVDGESATIILLDMWENKG 99 (211)
T ss_dssp EEETTEEEEEEEECCTTTTH
T ss_pred EEECCeeeEEEEeecCCCcc
Confidence 44432234578899999886
No 199
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=48.86 E-value=9.1 Score=29.79 Aligned_cols=17 Identities=6% Similarity=-0.287 Sum_probs=14.5
Q ss_pred CCCeeEEEcCCCccccc
Q 045003 33 GGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs 49 (93)
..-++.+.||||+|.|.
T Consensus 44 ~~v~LqIWDTAGQErf~ 60 (331)
T 3r7w_B 44 TLIDLAVMELPGQLNYF 60 (331)
T ss_dssp SSSCEEEEECCSCSSSC
T ss_pred cEEEEEEEECCCchhcc
Confidence 34689999999999994
No 200
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=45.71 E-value=12 Score=30.06 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=9.4
Q ss_pred CeeEEEcCCCc
Q 045003 35 IKFNFHNCEFY 45 (93)
Q Consensus 35 ~~itFiDTPGH 45 (93)
..|+|+||||=
T Consensus 140 ~~vvllDTeG~ 150 (447)
T 3q5d_A 140 VAVLLMDTQGT 150 (447)
T ss_dssp EEEEEEEEECC
T ss_pred ceEEEEcCCcc
Confidence 46999999993
No 201
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=39.62 E-value=6.2 Score=30.70 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=0.0
Q ss_pred cCcccCcceeeecceEEEEcCCCCeeEE
Q 045003 12 VAKEAGGITQHVGAFVIGMSTGGIKFNF 39 (93)
Q Consensus 12 a~~EaGGITQhIGA~~V~~~~~~~~itF 39 (93)
...+.++|||.||..++... +...|-+
T Consensus 129 mrkri~~Itqrlg~ltL~~~-~~~eIdL 155 (246)
T 1z56_A 129 MELESSAIIRKIAELTLHPV-KKGEIDL 155 (246)
T ss_dssp ----------------------------
T ss_pred EeehhhHHHhhheeEEeecC-ccchhhH
Confidence 45689999999999999865 3333433
No 202
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=39.58 E-value=26 Score=27.65 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=18.1
Q ss_pred eEEEEcCCCCeeEEEcCCCcccccCc
Q 045003 26 FVIGMSTGGIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 26 ~~V~~~~~~~~itFiDTPGHeAFs~f 51 (93)
..+.. ++.++.+.||.|++.|..+
T Consensus 210 ~~~~~--~~v~l~iwDtaGQe~~r~~ 233 (402)
T 1azs_C 210 TKFQV--DKVNFHMFDVGGQRDERRK 233 (402)
T ss_dssp EEEEE--TTEEEEEEEECCSGGGGGG
T ss_pred EEeec--CCccceecccchhhhhhhh
Confidence 34555 3578999999999998764
No 203
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=38.71 E-value=23 Score=27.09 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=13.9
Q ss_pred CCeeEEEcCCCcccccCc
Q 045003 34 GIKFNFHNCEFYHRTSLF 51 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs~f 51 (93)
.-++.+.||+|++.|..+
T Consensus 182 ~v~l~iwDtaGQe~~r~~ 199 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK 199 (354)
T ss_dssp --EEEEEEECCSTTGGGG
T ss_pred ceeeEEEECCCchhhhHH
Confidence 457899999999998763
No 204
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=37.42 E-value=23 Score=27.38 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=19.8
Q ss_pred ecceEEEEcCCCCeeEEEcCCCcccccC
Q 045003 23 VGAFVIGMSTGGIKFNFHNCEFYHRTSL 50 (93)
Q Consensus 23 IGA~~V~~~~~~~~itFiDTPGHeAFs~ 50 (93)
+|..+....-+..++.+.||.|++.|..
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQe~~R~ 176 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQRSERK 176 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSCHHHHH
T ss_pred eeeEEEEEEeeeeeeccccCCCcccccc
Confidence 4544444433577899999999998754
No 205
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=37.36 E-value=12 Score=27.96 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=10.4
Q ss_pred CCCeeEEEcCCC
Q 045003 33 GGIKFNFHNCEF 44 (93)
Q Consensus 33 ~~~~itFiDTPG 44 (93)
.+..++|+||||
T Consensus 170 ~~~~~iiiDTpG 181 (355)
T 3p32_A 170 AGFDVILIETVG 181 (355)
T ss_dssp TTCCEEEEEECS
T ss_pred CCCCEEEEeCCC
Confidence 357899999999
No 206
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=36.43 E-value=23 Score=27.12 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=20.6
Q ss_pred CCCeeEEEcCCCcccccCchhh---hhcccEeEE
Q 045003 33 GGIKFNFHNCEFYHRTSLFFFV---QLRNFVIVL 63 (93)
Q Consensus 33 ~~~~itFiDTPGHeAFs~f~~m---R~RGa~iv~ 63 (93)
++-++.+.||.|++.|..+-.. -..|+.+|+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~ 198 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 198 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEE
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEE
Confidence 4678999999999988653222 124555565
No 207
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=35.37 E-value=20 Score=24.33 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=6.0
Q ss_pred CcccCcceeeecceEEEEc
Q 045003 13 AKEAGGITQHVGAFVIGMS 31 (93)
Q Consensus 13 ~~EaGGITQhIGA~~V~~~ 31 (93)
..|.|||||.- +.|...
T Consensus 4 ~~~~~~~~~~~--~~Vsis 20 (105)
T 1xiw_A 4 NEEMGGITQTP--YKVSIS 20 (105)
T ss_dssp --------CCC--CEEEEE
T ss_pred chhcCCcccce--EEEEEE
Confidence 46899999987 566654
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=34.78 E-value=13 Score=27.76 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=11.1
Q ss_pred CCCeeEEEcCCCc
Q 045003 33 GGIKFNFHNCEFY 45 (93)
Q Consensus 33 ~~~~itFiDTPGH 45 (93)
.+..+.|+||||-
T Consensus 146 ~~~~~iliDT~Gi 158 (337)
T 2qm8_A 146 AGFDVILVETVGV 158 (337)
T ss_dssp TTCCEEEEEECSS
T ss_pred CCCCEEEEECCCC
Confidence 4678999999995
No 209
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=34.66 E-value=23 Score=24.35 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=20.6
Q ss_pred CcccCcceeeecceEEEEcCCCCeeEEEcCCCccccc
Q 045003 13 AKEAGGITQHVGAFVIGMSTGGIKFNFHNCEFYHRTS 49 (93)
Q Consensus 13 ~~EaGGITQhIGA~~V~~~~~~~~itFiDTPGHeAFs 49 (93)
+--+|-+||-| ..+. +..-.+-++|-|||||+-
T Consensus 29 ~~~~g~VtkGi--Vy~k--d~~fyV~L~dY~glEaii 61 (102)
T 1jjg_A 29 DLSPGSVHEGI--VYFK--DGIFKVRLLGYEGHECIL 61 (102)
T ss_dssp CCCSSCEEEEE--EEEE--TTEEEEECTTTSSCEEEE
T ss_pred ccCCCceEeeE--EEEe--CCEEEEEecCCCCceeee
Confidence 34567777754 2222 233456678999999973
No 210
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=34.17 E-value=16 Score=25.71 Aligned_cols=14 Identities=7% Similarity=-0.126 Sum_probs=11.6
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 160 g~~~~~i~tpGHt~ 173 (317)
T 2zo4_A 160 GKRLRVLWTPGHAD 173 (317)
T ss_dssp TEEEEEEECCSSST
T ss_pred CceEEEEECCCCCc
Confidence 45799999999964
No 211
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=33.08 E-value=9.7 Score=30.10 Aligned_cols=12 Identities=8% Similarity=-0.250 Sum_probs=8.9
Q ss_pred eEEEcCCCcccc
Q 045003 37 FNFHNCEFYHRT 48 (93)
Q Consensus 37 itFiDTPGHeAF 48 (93)
|==||+|||...
T Consensus 109 IPEID~PGH~~a 120 (434)
T 2yl6_A 109 IPTVNSPGHMDA 120 (434)
T ss_dssp EEEEEESSSCHH
T ss_pred EEeccccchHHH
Confidence 335799999764
No 212
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=32.63 E-value=10 Score=29.37 Aligned_cols=12 Identities=0% Similarity=-0.277 Sum_probs=9.0
Q ss_pred eEEEcCCCcccc
Q 045003 37 FNFHNCEFYHRT 48 (93)
Q Consensus 37 itFiDTPGHeAF 48 (93)
|==||+|||...
T Consensus 112 IPEID~PGH~~a 123 (367)
T 1yht_A 112 IPELDSPNHMTA 123 (367)
T ss_dssp EEEEEESSSCHH
T ss_pred EEeccchHHHHH
Confidence 345799999864
No 213
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=31.54 E-value=11 Score=30.00 Aligned_cols=11 Identities=9% Similarity=-0.312 Sum_probs=8.4
Q ss_pred EEEcCCCcccc
Q 045003 38 NFHNCEFYHRT 48 (93)
Q Consensus 38 tFiDTPGHeAF 48 (93)
==||+|||...
T Consensus 113 PEID~PGH~~a 123 (442)
T 2yl5_A 113 PAINSPGHMDA 123 (442)
T ss_dssp EEEEESSSCHH
T ss_pred eecccchhHHH
Confidence 34799999754
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=31.34 E-value=16 Score=29.60 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=12.3
Q ss_pred CCCeeEEEcCCCccc
Q 045003 33 GGIKFNFHNCEFYHR 47 (93)
Q Consensus 33 ~~~~itFiDTPGHeA 47 (93)
++..+++|||||...
T Consensus 182 ~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 182 ENFEIIIVDTSGRHK 196 (504)
T ss_dssp TTCCEEEEEECCCCT
T ss_pred CCCcEEEEeCCCCcc
Confidence 456899999999863
No 215
>1t5r_A LUKS-PV; BI-component leucotoxin, pore-forming toxin, staphylococcus aureus, S component leucocidin,, unknown function; 2.00A {Staphylococcus phage pvl} SCOP: f.6.1.1
Probab=30.13 E-value=14 Score=28.80 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=27.2
Q ss_pred CCcCcccCcceeeecceEEEEcCCCCeeEEEcCCC
Q 045003 10 SVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEF 44 (93)
Q Consensus 10 ~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPG 44 (93)
.+...|. ||||.|-+-.|.-+..++++++|-|-|
T Consensus 19 ~~~~~~~-~i~~~l~~~FI~D~~~dK~~~ii~~~G 52 (284)
T 1t5r_A 19 DTSSDKW-GVTQNIQFDFVKDKKYNKDALILKMQG 52 (284)
T ss_dssp EEEETTT-TEEEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred ccccccc-CeeEEEEEEEecCCCCCceEEEEEecc
Confidence 4556777 999999999988766677888888777
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=29.67 E-value=22 Score=26.29 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=12.5
Q ss_pred CCCeeEEEcCCCccc
Q 045003 33 GGIKFNFHNCEFYHR 47 (93)
Q Consensus 33 ~~~~itFiDTPGHeA 47 (93)
++..+.+|||||...
T Consensus 179 ~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHG 193 (297)
T ss_dssp TTCSEEEEECCCSCC
T ss_pred CCCCEEEEeCCCCcc
Confidence 456799999999876
No 217
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=28.85 E-value=28 Score=28.98 Aligned_cols=51 Identities=8% Similarity=0.140 Sum_probs=32.0
Q ss_pred CCCeeEEEcCCCccc----------------ccCchhhhhcccEeEEec-------ccc----cceeeeeccccccch
Q 045003 33 GGIKFNFHNCEFYHR----------------TSLFFFVQLRNFVIVLRK-------NNC----QGTYLFPWSYSELGL 83 (93)
Q Consensus 33 ~~~~itFiDTPGHeA----------------Fs~f~~mR~RGa~iv~~~-------~~~----~~~~~~~~~~~~~~~ 83 (93)
+.+-|+|+||||-.. +.++.+.+--=+.||++| --| ..+++|-|..++++.
T Consensus 373 ~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V 450 (531)
T 3n6r_B 373 EIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV 450 (531)
T ss_dssp TCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred CCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec
Confidence 457899999999731 111112233345678888 223 356899999887764
No 218
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=28.71 E-value=30 Score=28.58 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.6
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||++
T Consensus 268 g~~l~vi~tPGHhT 281 (658)
T 2cfu_A 268 GVPFTFQNTPGTES 281 (658)
T ss_dssp TEEEEEEECTTSSS
T ss_pred CEEEEEEeCCCCCC
Confidence 56799999999953
No 219
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=27.76 E-value=22 Score=23.35 Aligned_cols=11 Identities=0% Similarity=-0.290 Sum_probs=9.0
Q ss_pred CCeeEEEcCCC
Q 045003 34 GIKFNFHNCEF 44 (93)
Q Consensus 34 ~~~itFiDTPG 44 (93)
+..+.++||||
T Consensus 108 ~~d~iiidt~G 118 (221)
T 2wsm_A 108 DCDLLLIENVG 118 (221)
T ss_dssp TCSEEEEEEEE
T ss_pred CCCEEEEeCCC
Confidence 45789998888
No 220
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=26.95 E-value=16 Score=29.70 Aligned_cols=10 Identities=0% Similarity=-0.370 Sum_probs=8.0
Q ss_pred EEcCCCcccc
Q 045003 39 FHNCEFYHRT 48 (93)
Q Consensus 39 FiDTPGHeAF 48 (93)
=||+|||...
T Consensus 234 EID~PGH~~a 243 (507)
T 2gjx_A 234 EFDTPGHTLS 243 (507)
T ss_dssp ECCCSSSCTT
T ss_pred CCCCcchHHH
Confidence 4799999863
No 221
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=26.22 E-value=31 Score=26.60 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=13.1
Q ss_pred CCeeEEEcCCCccccc
Q 045003 34 GIKFNFHNCEFYHRTS 49 (93)
Q Consensus 34 ~~~itFiDTPGHeAFs 49 (93)
...+.|+||||...+.
T Consensus 68 ~~~i~lvDtpGl~~~a 83 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGA 83 (368)
T ss_dssp CCEEEEEECCSCCCCC
T ss_pred CceEEEEECCCccccc
Confidence 3579999999998763
No 222
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=24.95 E-value=35 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=11.8
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 137 ~~~i~~~~~pGHt~ 150 (261)
T 3adr_A 137 GYRMRLIYTPGHAR 150 (261)
T ss_dssp SSEEEEEECTTSCT
T ss_pred CEEEEEEECCCCCC
Confidence 56799999999975
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.74 E-value=38 Score=25.05 Aligned_cols=13 Identities=0% Similarity=-0.269 Sum_probs=11.6
Q ss_pred CCeeEEEcCCCcc
Q 045003 34 GIKFNFHNCEFYH 46 (93)
Q Consensus 34 ~~~itFiDTPGHe 46 (93)
.+.+.++|.|||.
T Consensus 84 ~pdlvIVDElG~~ 96 (228)
T 2r8r_A 84 APSLVLVDELAHT 96 (228)
T ss_dssp CCSEEEESCTTCB
T ss_pred CCCEEEEeCCCCC
Confidence 4689999999997
No 224
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.34 E-value=31 Score=25.28 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=11.7
Q ss_pred CCCeeEEEcCCCccc
Q 045003 33 GGIKFNFHNCEFYHR 47 (93)
Q Consensus 33 ~~~~itFiDTPGHeA 47 (93)
....+++|||||...
T Consensus 179 ~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 179 EARDLILVDTAGRLQ 193 (295)
T ss_dssp HTCCEEEEECCCCSS
T ss_pred CCCCEEEEeCCCCcc
Confidence 356899999998743
No 225
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=24.22 E-value=17 Score=29.50 Aligned_cols=10 Identities=0% Similarity=-0.370 Sum_probs=8.1
Q ss_pred EEcCCCcccc
Q 045003 39 FHNCEFYHRT 48 (93)
Q Consensus 39 FiDTPGHeAF 48 (93)
=||+|||...
T Consensus 239 EID~PGH~~a 248 (507)
T 1now_A 239 EFDTPGHTLS 248 (507)
T ss_dssp EEEESSSCTT
T ss_pred ccCCchhHHH
Confidence 4799999863
No 226
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=24.20 E-value=33 Score=28.46 Aligned_cols=51 Identities=6% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCCeeEEEcCCCccc----------------ccCchhhhhcccEeEEec--------ccc---cceeeeeccccccch
Q 045003 33 GGIKFNFHNCEFYHR----------------TSLFFFVQLRNFVIVLRK--------NNC---QGTYLFPWSYSELGL 83 (93)
Q Consensus 33 ~~~~itFiDTPGHeA----------------Fs~f~~mR~RGa~iv~~~--------~~~---~~~~~~~~~~~~~~~ 83 (93)
+.+-|+|+||||-.. +.++...+--=+.||++| ..+ ..+++|-|..++.+.
T Consensus 382 ~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V 459 (548)
T 2bzr_A 382 NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV 459 (548)
T ss_dssp TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred CCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe
Confidence 457899999999211 111112222245678888 333 255899998887654
No 227
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=23.92 E-value=31 Score=24.43 Aligned_cols=14 Identities=7% Similarity=0.047 Sum_probs=11.3
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 101 ~~~~~vi~tPGHt~ 114 (254)
T 1xm8_A 101 GHEVHVMDTPGHTK 114 (254)
T ss_dssp TEEEEEEECCSSSS
T ss_pred CEEEEEEECCCCCC
Confidence 45688999999974
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=23.72 E-value=33 Score=26.97 Aligned_cols=16 Identities=0% Similarity=-0.330 Sum_probs=12.6
Q ss_pred CCCeeEEEcCCCcccc
Q 045003 33 GGIKFNFHNCEFYHRT 48 (93)
Q Consensus 33 ~~~~itFiDTPGHeAF 48 (93)
++..+++|||||...+
T Consensus 182 ~~~D~VIIDTpG~l~~ 197 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHV 197 (433)
T ss_dssp TTCSEEEEECCCCCTT
T ss_pred CCCCEEEEECCCcccc
Confidence 3568999999997554
No 229
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=23.67 E-value=33 Score=25.68 Aligned_cols=16 Identities=0% Similarity=-0.147 Sum_probs=12.6
Q ss_pred CCCeeEEEcCCCcccc
Q 045003 33 GGIKFNFHNCEFYHRT 48 (93)
Q Consensus 33 ~~~~itFiDTPGHeAF 48 (93)
++..+++|||||--..
T Consensus 190 ~~yD~VIIDTpg~l~~ 205 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQN 205 (320)
T ss_dssp TTCSEEEEECCCCGGG
T ss_pred cCCCEEEEcCCCcccc
Confidence 4678999999996543
No 230
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=23.63 E-value=32 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.085 Sum_probs=11.3
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 138 ~~~i~~i~~pGHt~ 151 (263)
T 1k07_A 138 GTVLTAHLTPGHTR 151 (263)
T ss_dssp TEEEEEEECCSSST
T ss_pred CeEEEEEECCCCCC
Confidence 44689999999975
No 231
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=23.43 E-value=32 Score=24.00 Aligned_cols=14 Identities=7% Similarity=-0.092 Sum_probs=11.5
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 135 g~~~~~~~~pGHt~ 148 (289)
T 4ad9_A 135 GATLRVLYTPGHTD 148 (289)
T ss_dssp TEEEEEEECCSSST
T ss_pred CeEEEEEECCCCCC
Confidence 45789999999974
No 232
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=23.33 E-value=35 Score=24.92 Aligned_cols=32 Identities=13% Similarity=-0.048 Sum_probs=20.6
Q ss_pred eEEEcCC-CcccccC-----chhhhh-cccEeEEeccccc
Q 045003 37 FNFHNCE-FYHRTSL-----FFFVQL-RNFVIVLRKNNCQ 69 (93)
Q Consensus 37 itFiDTP-GHeAFs~-----f~~mR~-RGa~iv~~~~~~~ 69 (93)
++|+|+| +|. |.. +..+.. .+..+|++||...
T Consensus 130 ll~ldePt~~~-Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHG-LKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSS-CCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeeecCcccC-CCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 8999999 561 111 112222 4899999998764
No 233
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=23.23 E-value=34 Score=22.47 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=11.2
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 121 ~~~i~~~~~pgHt~ 134 (210)
T 2xf4_A 121 NVTLQVLHCPGHTP 134 (210)
T ss_dssp TEEEEEEECCSSST
T ss_pred CeEEEEEECCCCCC
Confidence 45689999999975
No 234
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=22.97 E-value=20 Score=29.53 Aligned_cols=12 Identities=0% Similarity=-0.269 Sum_probs=9.1
Q ss_pred eEEEcCCCcccc
Q 045003 37 FNFHNCEFYHRT 48 (93)
Q Consensus 37 itFiDTPGHeAF 48 (93)
|==||+|||..-
T Consensus 241 IPEID~PGH~~a 252 (543)
T 3rcn_A 241 IPEIDVPGHSQA 252 (543)
T ss_dssp EEECCCSSSCHH
T ss_pred eeeeccchhHHH
Confidence 445899999953
No 235
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=22.91 E-value=21 Score=29.08 Aligned_cols=10 Identities=0% Similarity=-0.400 Sum_probs=7.8
Q ss_pred EEcCCCcccc
Q 045003 39 FHNCEFYHRT 48 (93)
Q Consensus 39 FiDTPGHeAF 48 (93)
=||+|||...
T Consensus 250 EID~PGH~~a 259 (512)
T 1jak_A 250 EIDMPGHTNA 259 (512)
T ss_dssp ECCCSSSCHH
T ss_pred ccCCCchHHH
Confidence 3699999864
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.86 E-value=33 Score=26.94 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=11.5
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+++|||||-..
T Consensus 180 ~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 180 KADVLIIDTAGRHK 193 (432)
T ss_dssp SCSEEEEECCCSCS
T ss_pred CCCEEEEcCCCCcc
Confidence 56799999999754
No 237
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase, NMT1, acyltransferase, phosphoprotein, structural genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A* 3iwe_A* 3jtk_A*
Probab=22.82 E-value=65 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.8
Q ss_pred cCCcCcccCcceeeecceEEEE
Q 045003 9 TSVVAKEAGGITQHVGAFVIGM 30 (93)
Q Consensus 9 t~Va~~EaGGITQhIGA~~V~~ 30 (93)
|=|++.+.|-||.=+.-|.++.
T Consensus 271 syVve~~~g~ITDf~SFY~Lps 292 (383)
T 3iu1_A 271 TFVVENANGEVTDFLSFYTLPS 292 (383)
T ss_dssp EEEEECTTSCEEEEEEEEECCE
T ss_pred EEEEECCCCcEeeEEEEEEccc
Confidence 4455655689999999888876
No 238
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=22.55 E-value=36 Score=25.48 Aligned_cols=13 Identities=8% Similarity=-0.072 Sum_probs=10.9
Q ss_pred CCCeeEEEcCCCc
Q 045003 33 GGIKFNFHNCEFY 45 (93)
Q Consensus 33 ~~~~itFiDTPGH 45 (93)
++..+.|+||||-
T Consensus 165 ~~~~~iliDT~Gi 177 (349)
T 2www_A 165 AGYDIILIETVGV 177 (349)
T ss_dssp TTCSEEEEECCCC
T ss_pred CCCCEEEEECCCc
Confidence 4668999999995
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=22.30 E-value=47 Score=21.39 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=11.1
Q ss_pred CCCeeEEEcCCCcc
Q 045003 33 GGIKFNFHNCEFYH 46 (93)
Q Consensus 33 ~~~~itFiDTPGHe 46 (93)
+...+++||||+.-
T Consensus 74 ~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL 87 (206)
T ss_dssp TTSSEEEEECCSSS
T ss_pred CCCCEEEEECCCCC
Confidence 35679999999865
No 240
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=21.94 E-value=36 Score=24.15 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=11.5
Q ss_pred CCeeEEEcCCCccc
Q 045003 34 GIKFNFHNCEFYHR 47 (93)
Q Consensus 34 ~~~itFiDTPGHeA 47 (93)
+..+.++.||||..
T Consensus 106 ~~~~~vi~tPGHt~ 119 (258)
T 2qed_A 106 GEKFTLFATPGHTL 119 (258)
T ss_dssp TEEEEEEECCSSST
T ss_pred CcEEEEEECCCCCC
Confidence 45789999999974
No 241
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=21.64 E-value=22 Score=29.80 Aligned_cols=11 Identities=0% Similarity=-0.375 Sum_probs=8.6
Q ss_pred EEEcCCCcccc
Q 045003 38 NFHNCEFYHRT 48 (93)
Q Consensus 38 tFiDTPGHeAF 48 (93)
==||||||...
T Consensus 163 PEID~PGH~~a 173 (627)
T 2epl_X 163 PCIQTLAHLSA 173 (627)
T ss_dssp EECCSSSCCHH
T ss_pred EeeccCCcHHH
Confidence 34799999865
No 242
>2qk7_A Gamma-hemolysin component A; pore-forming toxin, beta-barrel, protein-protein interaction molecular plasticity, covalent complex; 2.40A {Staphylococcus aureus subsp} PDB: 3b07_B
Probab=21.47 E-value=27 Score=27.34 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=27.5
Q ss_pred CCcCcccCcceeeecceEEEEcCCCCeeEEEcCCC
Q 045003 10 SVVAKEAGGITQHVGAFVIGMSTGGIKFNFHNCEF 44 (93)
Q Consensus 10 ~Va~~EaGGITQhIGA~~V~~~~~~~~itFiDTPG 44 (93)
.+...|. ||||.|-+-.|.-+..++.+++|-|-|
T Consensus 27 ~~~~~~~-~i~~~l~~~FI~D~~~dK~~~iik~~G 60 (288)
T 2qk7_A 27 DITSKRL-AICQNIQFDFVKDKKYNKDALVVKMQG 60 (288)
T ss_dssp EEEETTT-TEEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred ccccccc-CeeEEEEEEEecCCCCCceEEEEEecc
Confidence 3455677 999999998888766688899998888
No 243
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=21.42 E-value=67 Score=25.07 Aligned_cols=11 Identities=0% Similarity=-0.155 Sum_probs=9.3
Q ss_pred eeEEEcCCCcc
Q 045003 36 KFNFHNCEFYH 46 (93)
Q Consensus 36 ~itFiDTPGHe 46 (93)
.+.|+||||..
T Consensus 86 ~i~lvD~pGl~ 96 (392)
T 1ni3_A 86 FLTVFDIAGLT 96 (392)
T ss_dssp EEEEECTGGGC
T ss_pred ceEEEeccccc
Confidence 68999999954
No 244
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=21.29 E-value=23 Score=29.19 Aligned_cols=12 Identities=0% Similarity=-0.330 Sum_probs=9.2
Q ss_pred eEEEcCCCcccc
Q 045003 37 FNFHNCEFYHRT 48 (93)
Q Consensus 37 itFiDTPGHeAF 48 (93)
|==||+|||...
T Consensus 273 IPEID~PGH~~a 284 (525)
T 3gh5_A 273 IPEIDMPGHTNA 284 (525)
T ss_dssp EEECCCSSSCHH
T ss_pred EEEecccchHHH
Confidence 445899999963
No 245
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=21.15 E-value=39 Score=23.73 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=11.0
Q ss_pred CeeEEEcCCCccc
Q 045003 35 IKFNFHNCEFYHR 47 (93)
Q Consensus 35 ~~itFiDTPGHeA 47 (93)
..+.++.||||..
T Consensus 151 ~~l~~i~~pGHt~ 163 (303)
T 2vw8_A 151 HRLQVIEAHGHSD 163 (303)
T ss_dssp EEEEEEECTTSST
T ss_pred eEEEEEECCCCCc
Confidence 5688999999975
No 246
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=21.07 E-value=33 Score=25.00 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=5.5
Q ss_pred hhhcc-cEeEE
Q 045003 54 VQLRN-FVIVL 63 (93)
Q Consensus 54 mR~RG-a~iv~ 63 (93)
+++.| +.|++
T Consensus 43 L~~~g~~~V~~ 53 (234)
T 3ne8_A 43 LQKGSHTIVAL 53 (234)
T ss_dssp HHHSSSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 34555 66655
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=20.27 E-value=32 Score=25.32 Aligned_cols=16 Identities=6% Similarity=-0.104 Sum_probs=12.8
Q ss_pred CCCeeEEEcCCCcccc
Q 045003 33 GGIKFNFHNCEFYHRT 48 (93)
Q Consensus 33 ~~~~itFiDTPGHeAF 48 (93)
.+..++++||||--..
T Consensus 181 ~~~dlvIiDT~G~~~~ 196 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFK 196 (296)
T ss_dssp GGSSEEEEECCCCCTT
T ss_pred cCCCEEEEeCCCCChh
Confidence 3568999999997654
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=20.24 E-value=69 Score=23.19 Aligned_cols=39 Identities=23% Similarity=0.067 Sum_probs=22.3
Q ss_pred eecceEEEEcCCCCeeEEEcCCCcccccCchhhhhcccEeE
Q 045003 22 HVGAFVIGMSTGGIKFNFHNCEFYHRTSLFFFVQLRNFVIV 62 (93)
Q Consensus 22 hIGA~~V~~~~~~~~itFiDTPGHeAFs~f~~mR~RGa~iv 62 (93)
-||.+.......+.++.+.|| |+.|..+..+-.|++..+
T Consensus 50 TiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~v 88 (301)
T 1u0l_A 50 YVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQV 88 (301)
T ss_dssp CTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEE
T ss_pred CCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEE
Confidence 466443221112337889999 999887655444544433
Done!