BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045006
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 35.4 bits (80), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 10  LKSLPAEIFLLELLKKLNFSGCSKLK--------RLPESRVLIRCGCKRLKSLPSSICQL 61
           L +L   I  L  L++L+  GC+ L+        R P  R++++  C  L +LP  I +L
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK-DCSNLLTLPLDIHRL 276

Query: 62  KPLQVLNLHGSSNLHRLP 79
             L+ L+L G  NL RLP
Sbjct: 277 TQLEKLDLRGCVNLSRLP 294



 Score = 31.2 bits (69), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 15/91 (16%)

Query: 10  LKSLPAEIFLLELLKKLNFSGCSKLKRLPES----------RVLIRCGCKRL-----KSL 54
           L++LPA I  L  L++L+   C +L  LPE           + L+     RL     +SL
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 55  PSSICQLKPLQVLNLHGSSNLHRLPDEHSIP 85
           P+SI  L+ L+ L +  S      P  H +P
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLP 229



 Score = 30.8 bits (68), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%)

Query: 2   LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRVLIRCGC 48
           L L  C  L +LP +I  L  L+KL+  GC  L RLP     +   C
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304



 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 2   LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLP-------ESRVLIRCGCKRLKSL 54
           L+L GC  L++ P        LK+L    CS L  LP       +   L   GC  L  L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 55  PSSICQL 61
           PS I QL
Sbjct: 294 PSLIAQL 300


>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
           Synthetase
 pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
           Synthetase
          Length = 295

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 33  KLKRLPESRVLIRCGCKR-----LKSLPSSICQLKPLQVLNLHGSSNLHRLP 79
           +L+ L  S  L+ C C       +K   S  C ++P QV+ +H  S+++R+P
Sbjct: 225 ELRGLGLSPDLVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVP 276


>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain
 pdb|1MHQ|B Chain B, Crystal Structure Of Human Gga2 Vhs Domain
          Length = 148

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 90  NYSERLQSRPKLPSNLEWLLAHR 112
           N+ E++ + P  P++  WLLAH+
Sbjct: 24  NFCEQVNTDPNGPTHAPWLLAHK 46


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 26.2 bits (56), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 5   GGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLPSSICQLKPL 64
           G C   KSL      L L    N    +  + LP    ++     ++KS+P  + +L+ L
Sbjct: 393 GDCSWTKSL------LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446

Query: 65  QVLNLHGSSNLHRLPD 80
           Q LN+  S+ L  +PD
Sbjct: 447 QELNV-ASNQLKSVPD 461


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,694,239
Number of Sequences: 62578
Number of extensions: 174479
Number of successful extensions: 290
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 14
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)