Query 045006
Match_columns 167
No_of_seqs 184 out of 1505
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 2.7E-13 5.9E-18 121.4 9.8 95 50-145 790-910 (1153)
2 PLN03210 Resistant to P. syrin 99.4 1E-12 2.2E-17 117.8 10.0 73 2-76 639-718 (1153)
3 PLN00113 leucine-rich repeat r 99.0 5.3E-10 1.2E-14 98.8 7.0 98 2-99 145-253 (968)
4 PLN00113 leucine-rich repeat r 99.0 6.6E-10 1.4E-14 98.2 6.9 113 1-113 168-294 (968)
5 PRK15386 type III secretion pr 98.7 5.9E-08 1.3E-12 77.8 8.0 52 2-57 57-113 (426)
6 KOG0444 Cytoskeletal regulator 98.6 7.5E-09 1.6E-13 86.2 0.2 131 2-137 108-254 (1255)
7 PRK15370 E3 ubiquitin-protein 98.5 2.6E-07 5.6E-12 79.7 7.3 125 2-139 204-357 (754)
8 PRK15386 type III secretion pr 98.5 4.9E-07 1.1E-11 72.6 6.8 69 17-90 48-120 (426)
9 PLN03150 hypothetical protein; 98.4 3.8E-07 8.3E-12 77.5 6.2 97 2-98 423-531 (623)
10 PRK15370 E3 ubiquitin-protein 98.4 5.8E-07 1.3E-11 77.6 7.1 128 2-143 225-381 (754)
11 PRK15387 E3 ubiquitin-protein 98.4 8.3E-07 1.8E-11 76.7 7.6 125 2-138 206-352 (788)
12 PRK15387 E3 ubiquitin-protein 98.4 1.4E-06 3E-11 75.3 8.3 106 2-119 227-357 (788)
13 KOG0617 Ras suppressor protein 98.4 4.9E-08 1.1E-12 69.5 -1.1 68 2-72 38-112 (264)
14 KOG0617 Ras suppressor protein 98.2 2.1E-07 4.6E-12 66.4 -0.5 66 12-81 25-97 (264)
15 KOG4658 Apoptotic ATPase [Sign 98.2 1.2E-06 2.5E-11 76.9 3.6 70 1-71 575-651 (889)
16 KOG0444 Cytoskeletal regulator 98.0 1E-06 2.2E-11 73.8 -0.1 112 2-117 227-376 (1255)
17 KOG0532 Leucine-rich repeat (L 97.8 1.4E-06 3E-11 71.9 -2.3 100 10-112 110-243 (722)
18 KOG0472 Leucine-rich repeat pr 97.8 2.9E-06 6.3E-11 67.6 -0.8 93 9-105 194-297 (565)
19 KOG0472 Leucine-rich repeat pr 97.8 3.9E-06 8.3E-11 66.9 -0.3 77 2-81 440-523 (565)
20 cd00116 LRR_RI Leucine-rich re 97.7 2.9E-05 6.4E-10 60.1 3.1 30 43-72 142-175 (319)
21 KOG0618 Serine/threonine phosp 97.6 6.1E-06 1.3E-10 71.4 -1.8 95 17-115 379-488 (1081)
22 PF13855 LRR_8: Leucine rich r 97.6 8.4E-05 1.8E-09 43.7 3.6 53 2-73 6-60 (61)
23 PLN03150 hypothetical protein; 97.6 0.0001 2.2E-09 62.9 5.1 79 1-79 446-532 (623)
24 KOG0618 Serine/threonine phosp 97.6 2.3E-05 4.9E-10 68.0 1.0 76 2-81 50-132 (1081)
25 KOG4194 Membrane glycoprotein 97.5 1.3E-05 2.9E-10 66.6 -1.3 119 16-138 288-426 (873)
26 PF12799 LRR_4: Leucine Rich r 97.5 0.00014 3E-09 40.1 3.0 40 21-79 1-40 (44)
27 KOG0532 Leucine-rich repeat (L 97.4 1.7E-05 3.7E-10 65.7 -1.7 94 2-101 80-184 (722)
28 KOG4194 Membrane glycoprotein 97.3 0.00032 6.9E-09 58.7 4.7 39 2-42 83-122 (873)
29 PF14580 LRR_9: Leucine-rich r 97.3 0.00017 3.7E-09 51.8 2.6 64 10-78 9-79 (175)
30 PF12799 LRR_4: Leucine Rich r 97.3 0.00019 4.1E-09 39.5 2.2 36 1-38 5-40 (44)
31 KOG4658 Apoptotic ATPase [Sign 97.2 0.00017 3.7E-09 63.6 2.1 69 11-80 560-636 (889)
32 cd00116 LRR_RI Leucine-rich re 97.2 7.8E-05 1.7E-09 57.7 -0.1 99 15-113 75-203 (319)
33 COG4886 Leucine-rich repeat (L 96.9 0.00071 1.5E-08 54.3 3.0 69 9-80 127-203 (394)
34 COG4886 Leucine-rich repeat (L 96.9 0.00071 1.5E-08 54.3 2.6 132 2-140 145-289 (394)
35 PF14580 LRR_9: Leucine-rich r 96.7 0.0015 3.3E-08 46.9 2.8 87 2-93 24-124 (175)
36 KOG2120 SCF ubiquitin ligase, 96.6 3.8E-05 8.3E-10 59.3 -6.4 14 59-72 257-270 (419)
37 PF13855 LRR_8: Leucine rich r 96.3 0.0037 8E-08 36.5 2.5 31 50-81 12-43 (61)
38 KOG4579 Leucine-rich repeat (L 96.0 0.00063 1.4E-08 47.1 -2.2 75 2-80 32-117 (177)
39 KOG4341 F-box protein containi 95.4 0.0012 2.5E-08 53.1 -2.9 81 63-143 139-231 (483)
40 PF13504 LRR_7: Leucine rich r 95.4 0.01 2.2E-07 25.6 1.3 17 21-38 1-17 (17)
41 PF00560 LRR_1: Leucine Rich R 95.1 0.006 1.3E-07 28.2 0.0 18 22-40 1-18 (22)
42 KOG1259 Nischarin, modulator o 94.9 0.0053 1.2E-07 47.9 -0.7 54 20-77 283-343 (490)
43 KOG2120 SCF ubiquitin ligase, 94.8 0.0037 8.1E-08 48.6 -1.8 95 57-151 229-336 (419)
44 KOG4341 F-box protein containi 94.4 0.024 5.2E-07 45.9 1.8 15 61-75 319-333 (483)
45 KOG3207 Beta-tubulin folding c 94.2 0.021 4.6E-07 46.4 1.2 30 43-72 202-232 (505)
46 KOG4237 Extracellular matrix p 94.1 0.022 4.8E-07 45.8 1.1 67 32-100 56-133 (498)
47 KOG1259 Nischarin, modulator o 94.0 0.013 2.8E-07 45.8 -0.3 73 2-78 289-367 (490)
48 KOG1947 Leucine rich repeat pr 94.0 0.021 4.6E-07 46.5 0.8 48 102-149 268-316 (482)
49 smart00367 LRR_CC Leucine-rich 93.3 0.11 2.4E-06 24.8 2.4 23 128-150 2-24 (26)
50 KOG4237 Extracellular matrix p 92.7 0.031 6.7E-07 45.1 -0.1 62 9-71 78-149 (498)
51 KOG3864 Uncharacterized conser 92.4 0.012 2.6E-07 43.2 -2.5 76 84-160 127-209 (221)
52 KOG3864 Uncharacterized conser 92.4 0.15 3.2E-06 37.5 3.0 51 102-152 124-175 (221)
53 KOG4579 Leucine-rich repeat (L 90.5 0.026 5.5E-07 39.3 -2.4 74 2-79 58-139 (177)
54 KOG3665 ZYG-1-like serine/thre 89.7 0.082 1.8E-06 46.0 -0.5 56 58-115 169-232 (699)
55 KOG3665 ZYG-1-like serine/thre 88.9 0.21 4.5E-06 43.6 1.3 109 2-112 127-259 (699)
56 smart00370 LRR Leucine-rich re 88.5 0.36 7.9E-06 22.8 1.6 20 20-40 1-20 (26)
57 smart00369 LRR_TYP Leucine-ric 88.5 0.36 7.9E-06 22.8 1.6 20 20-40 1-20 (26)
58 KOG1644 U2-associated snRNP A' 88.4 0.89 1.9E-05 33.7 4.1 19 18-37 61-79 (233)
59 KOG1859 Leucine-rich repeat pr 88.3 0.039 8.5E-07 47.9 -3.3 65 2-71 192-263 (1096)
60 PF13306 LRR_5: Leucine rich r 88.2 1.6 3.5E-05 28.7 5.2 80 51-142 46-129 (129)
61 KOG0531 Protein phosphatase 1, 87.0 0.53 1.1E-05 38.3 2.6 13 18-30 92-104 (414)
62 KOG1947 Leucine rich repeat pr 86.5 0.29 6.3E-06 39.8 0.8 92 61-152 187-293 (482)
63 KOG0531 Protein phosphatase 1, 86.3 0.52 1.1E-05 38.3 2.2 67 2-72 100-172 (414)
64 KOG1859 Leucine-rich repeat pr 81.6 0.084 1.8E-06 45.9 -4.3 22 9-30 175-196 (1096)
65 KOG3207 Beta-tubulin folding c 75.5 1.6 3.5E-05 35.9 1.4 54 18-72 219-281 (505)
66 PF13516 LRR_6: Leucine Rich r 74.3 2.4 5.2E-05 19.4 1.3 13 20-32 1-13 (24)
67 KOG2739 Leucine-rich acidic nu 69.6 6.3 0.00014 30.1 3.3 30 43-72 70-101 (260)
68 smart00364 LRR_BAC Leucine-ric 68.1 3.9 8.5E-05 19.7 1.3 18 21-39 2-19 (26)
69 KOG1644 U2-associated snRNP A' 67.1 25 0.00054 26.3 5.8 46 43-91 47-97 (233)
70 KOG2739 Leucine-rich acidic nu 61.7 10 0.00022 29.0 3.1 12 61-72 64-75 (260)
71 smart00365 LRR_SD22 Leucine-ri 58.0 9.6 0.00021 18.2 1.6 17 20-37 1-17 (26)
72 KOG2982 Uncharacterized conser 57.8 4.2 9E-05 32.2 0.5 15 17-31 93-107 (418)
73 KOG2123 Uncharacterized conser 53.3 1.4 3E-05 34.4 -2.6 68 2-73 24-99 (388)
74 KOG1909 Ran GTPase-activating 51.5 3.9 8.5E-05 32.7 -0.5 122 17-140 153-310 (382)
75 smart00368 LRR_RI Leucine rich 51.5 12 0.00026 17.9 1.4 12 21-32 2-13 (28)
76 KOG0473 Leucine-rich repeat pr 39.1 1.1 2.4E-05 34.1 -5.0 54 18-73 62-122 (326)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=2.7e-13 Score=121.36 Aligned_cols=95 Identities=29% Similarity=0.353 Sum_probs=61.8
Q ss_pred CCccCCccCCCCCCCCeeeecCCCCCccCCCCC---ccCccccccccccccCCCC-----------------------cc
Q 045006 50 RLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEH---SIPNKNLNYSERLQSRPKL-----------------------PS 103 (167)
Q Consensus 50 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~---~L~~l~l~~c~~l~~l~~~-----------------------~~ 103 (167)
.+..+|.+++++++|+.|++++|+.++.+|... +|+.|++++|..++.+|.. ++
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCC
Confidence 344456666677778888888887777777653 6677777777766655532 23
Q ss_pred ccccccccCCccchhccccccccCCCccEEeecCCCCCCHHH
Q 045006 104 NLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLDRNE 145 (167)
Q Consensus 104 ~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~~~~ 145 (167)
+|+.|++.+|.+|+.++..... ...++.+++.+|.+|+...
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISK-LKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCEEECCCCCCcCccCccccc-ccCCCeeecCCCccccccc
Confidence 5666667777777776332222 2457778888888886543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=1e-12 Score=117.78 Aligned_cols=73 Identities=40% Similarity=0.620 Sum_probs=34.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|+++++..++.+|. ++.+++|++|++++|..+..+|.+++ |++++|..++.+|..+ ++++|+.|++++|..
T Consensus 639 L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 639 IDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred EECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 34444444444443 44444455555555544444444432 4555555555555433 444455555554443
Q ss_pred Cc
Q 045006 75 LH 76 (167)
Q Consensus 75 l~ 76 (167)
++
T Consensus 717 L~ 718 (1153)
T PLN03210 717 LK 718 (1153)
T ss_pred cc
Confidence 33
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.02 E-value=5.3e-10 Score=98.79 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=50.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++|...+.+|..++++++|++|++++|...+.+|..+. |++++|...+.+|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 44555443345555566666666666666554445554433 56655554455555555566666666655443
Q ss_pred CccCCCC----CccCccccccccccccCC
Q 045006 75 LHRLPDE----HSIPNKNLNYSERLQSRP 99 (167)
Q Consensus 75 l~~lp~~----~~L~~l~l~~c~~l~~l~ 99 (167)
.+.+|.. .+|+.|++++|.....+|
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccC
Confidence 3344432 145555555444333333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=6.6e-10 Score=98.21 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=74.9
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
+|++++|...+.+|..++++++|++|++++|...+.+|..++ |++++|...+.+|..++++++|++|++++|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 367787766667888888888888888888776667776554 7777766666777777788888888887765
Q ss_pred CCccCCCC----CccCccccccccccccCCCC---ccccccccccCC
Q 045006 74 NLHRLPDE----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRC 113 (167)
Q Consensus 74 ~l~~lp~~----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c 113 (167)
..+.+|.. .+|+.|+++++.....+|.. +.+|+.|++++|
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 44445433 25666666665544444432 234555555544
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=5.9e-08 Score=77.81 Aligned_cols=52 Identities=35% Similarity=0.680 Sum_probs=36.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCcc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPSS 57 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~~ 57 (167)
|++++| .++.+|. ...+|++|.+++|..+..+|..+. |++++|..+..+|..
T Consensus 57 L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 57 LYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred EEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc
Confidence 678877 6777773 224688888888888777765443 888888777777754
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.61 E-value=7.5e-09 Score=86.19 Aligned_cols=131 Identities=27% Similarity=0.313 Sum_probs=84.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce--------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV--------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~--------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
||++++ .+++.|..+..-+++-.|++|+ +.++.||.++. ||+++ +.++.+|+.+..+.+|++|+++++.
T Consensus 108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 108 LDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCCh
Confidence 567765 4777777777777777777777 57777777654 78887 6788888888888888888888864
Q ss_pred ----CCccCCCCCccCccccccccc-cccCCCC---ccccccccccCCccchhccccccccCCCccEEeecC
Q 045006 74 ----NLHRLPDEHSIPNKNLNYSER-LQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSG 137 (167)
Q Consensus 74 ----~l~~lp~~~~L~~l~l~~c~~-l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~ 137 (167)
.++.+|+.++|..|.+++-.. +..+|.. +.+|..++++ |.+|..++...- ...+++.|++++
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly-~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLY-KLRNLRRLNLSG 254 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHh-hhhhhheeccCc
Confidence 346777777777777665432 3345543 3456666665 345555533221 112355555554
No 7
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.53 E-value=2.6e-07 Score=79.73 Aligned_cols=125 Identities=25% Similarity=0.288 Sum_probs=65.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCccCCCCCCCCeeeecCCCCCc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLH 76 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 76 (167)
|++++| .++.+|..+. .+|++|++++| .++.+|..+. |++++| .+..+|..+. .+|+.|++++ +.+.
T Consensus 204 L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~-N~L~ 275 (754)
T PRK15370 204 LILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLPDTIQEMELSIN-RITELPERLP--SALQSLDLFH-NKIS 275 (754)
T ss_pred EEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhhccccEEECcCC-ccCcCChhHh--CCCCEEECcC-CccC
Confidence 456654 4666665443 46777777764 4556664332 666663 3445655442 3566666654 3455
Q ss_pred cCCCCC--ccCccccccccccccCCCC----------------------ccccccccccCCccchhccccccccCCCccE
Q 045006 77 RLPDEH--SIPNKNLNYSERLQSRPKL----------------------PSNLEWLLAHRCTALESGLIFSISYESPLRH 132 (167)
Q Consensus 77 ~lp~~~--~L~~l~l~~c~~l~~l~~~----------------------~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~ 132 (167)
.+|... +|+.|++++| +++.+|.. +++|+.|++++| +++.++.. ....++.
T Consensus 276 ~LP~~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~---l~~sL~~ 350 (754)
T PRK15370 276 CLPENLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPAS---LPPELQV 350 (754)
T ss_pred ccccccCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChh---hcCcccE
Confidence 555432 4555555543 34444432 234555555554 24433221 1245777
Q ss_pred EeecCCC
Q 045006 133 FDLSGDF 139 (167)
Q Consensus 133 l~~~~C~ 139 (167)
|++++|.
T Consensus 351 L~Ls~N~ 357 (754)
T PRK15370 351 LDVSKNQ 357 (754)
T ss_pred EECCCCC
Confidence 8887773
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=4.9e-07 Score=72.64 Aligned_cols=69 Identities=22% Similarity=0.415 Sum_probs=53.7
Q ss_pred cCCCCCCCEEeccCCCCCccCC---CCce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCCCccCccccc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLP---ESRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLN 90 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp---~~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~ 90 (167)
+..+.++++|++++| .++.+| .++. |++++|..+..+|..+. .+|++|++++|..+..+|.. |..|.+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s--Le~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES--VRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc--cceEEeC
Confidence 344688999999998 677655 4455 99999999999997653 68999999999888888865 5555553
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=3.8e-07 Score=77.50 Aligned_cols=97 Identities=29% Similarity=0.293 Sum_probs=71.6
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|+++++..-+.+|..++.+++|+.|++++|...+.+|..++ |++++|...+.+|+.++++++|+.|++++|..
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 56777665567888899999999999999776678887655 89998777778899899999999999998766
Q ss_pred CccCCCCC-----ccCccccccccccccC
Q 045006 75 LHRLPDEH-----SIPNKNLNYSERLQSR 98 (167)
Q Consensus 75 l~~lp~~~-----~L~~l~l~~c~~l~~l 98 (167)
-+.+|... ++..+.+.++..+-..
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cccCChHHhhccccCceEEecCCccccCC
Confidence 66777642 2334445544444333
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=5.8e-07 Score=77.60 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=75.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCccCCCCCCCCeeeecCCCCCc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLH 76 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 76 (167)
|++++| .++.+|..+. .+|+.|++++| .+..+|..+. |++++ +.+..+|..+. .+|+.|++++| .+.
T Consensus 225 L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt 296 (754)
T PRK15370 225 LYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLPSALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIR 296 (754)
T ss_pred EECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHhCCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccc
Confidence 566665 4666765432 35666777664 3445554332 66654 45555665442 35666666653 344
Q ss_pred cCCC---------------------C--CccCccccccccccccCCCC-ccccccccccCCccchhccccccccCCCccE
Q 045006 77 RLPD---------------------E--HSIPNKNLNYSERLQSRPKL-PSNLEWLLAHRCTALESGLIFSISYESPLRH 132 (167)
Q Consensus 77 ~lp~---------------------~--~~L~~l~l~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~ 132 (167)
.+|. . .+|+.|.+++|. ++.+|.. +++|+.|+++++ +++.++... ...++.
T Consensus 297 ~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~l---p~~L~~ 371 (754)
T PRK15370 297 TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETL---PPTITT 371 (754)
T ss_pred cCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhh---cCCcCE
Confidence 3332 1 156666666653 6667754 569999999987 466654322 246899
Q ss_pred EeecCCCCCCH
Q 045006 133 FDLSGDFKLDR 143 (167)
Q Consensus 133 l~~~~C~~l~~ 143 (167)
|++++|. ++.
T Consensus 372 LdLs~N~-Lt~ 381 (754)
T PRK15370 372 LDVSRNA-LTN 381 (754)
T ss_pred EECCCCc-CCC
Confidence 9999984 443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.42 E-value=8.3e-07 Score=76.70 Aligned_cols=125 Identities=29% Similarity=0.316 Sum_probs=67.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC---ce-EEecCCCCCccCCccCCC-----------------
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES---RV-LIRCGCKRLKSLPSSICQ----------------- 60 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~---~~-L~l~~c~~l~~lp~~l~~----------------- 60 (167)
|+++++ .++.+|+.+. .+|+.|++++ +.++.+|.. +. |++++ +.++.+|....+
T Consensus 206 LdLs~~-~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~lp~~Lk~LdLs~-N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 206 LNVGES-GLTTLPDCLP--AHITTLVIPD-NNLTSLPALPPELRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred EEcCCC-CCCcCCcchh--cCCCEEEccC-CcCCCCCCCCCCCcEEEecC-CccCcccCcccccceeeccCCchhhhhhc
Confidence 567766 5777887554 3677777776 355555543 22 77766 355566542211
Q ss_pred CCCCCeeeecCCCCCccCCCCC-ccCccccccccccccCCCCccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 61 LKPLQVLNLHGSSNLHRLPDEH-SIPNKNLNYSERLQSRPKLPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 61 l~~L~~L~l~~c~~l~~lp~~~-~L~~l~l~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
..+|+.|++++| .+..+|... +|+.|+++++ .++.+|..+.+|+.|++.++ +++.++..+ ..|+.|+++++
T Consensus 281 p~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N-~L~~LP~lp----~~Lq~LdLS~N 352 (788)
T PRK15387 281 PSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN-QLTSLPTLP----SGLQELSVSDN 352 (788)
T ss_pred hhhcCEEECcCC-ccccccccccccceeECCCC-ccccCCCCcccccccccccC-ccccccccc----cccceEecCCC
Confidence 123444445442 344444332 4556666553 45556655556666666654 344443222 35677777764
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.39 E-value=1.4e-06 Score=75.32 Aligned_cols=106 Identities=33% Similarity=0.326 Sum_probs=67.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce------------------------EEecCCCCCccCCcc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV------------------------LIRCGCKRLKSLPSS 57 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~------------------------L~l~~c~~l~~lp~~ 57 (167)
|++.++ .++.+|.. +++|++|++++| .++.+|.... |++++ +.+..+|..
T Consensus 227 L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~~ 300 (788)
T PRK15387 227 LVIPDN-NLTSLPAL---PPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPVL 300 (788)
T ss_pred EEccCC-cCCCCCCC---CCCCcEEEecCC-ccCcccCcccccceeeccCCchhhhhhchhhcCEEECcC-Ccccccccc
Confidence 455554 46666652 456777777774 5555553221 44554 244555542
Q ss_pred CCCCCCCCeeeecCCCCCccCCCCC-ccCccccccccccccCCCCccccccccccCCccchhc
Q 045006 58 ICQLKPLQVLNLHGSSNLHRLPDEH-SIPNKNLNYSERLQSRPKLPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 58 l~~l~~L~~L~l~~c~~l~~lp~~~-~L~~l~l~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~ 119 (167)
.++|+.|++++| .+..+|... .|..|.+.+| .++.+|..+.+|+.|+++++ +|+.+
T Consensus 301 ---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N-~Ls~L 357 (788)
T PRK15387 301 ---PPGLQELSVSDN-QLASLPALPSELCKLWAYNN-QLTSLPTLPSGLQELSVSDN-QLASL 357 (788)
T ss_pred ---ccccceeECCCC-ccccCCCCcccccccccccC-ccccccccccccceEecCCC-ccCCC
Confidence 368999999995 677776543 6777777764 56778887788888888874 45554
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.35 E-value=4.9e-08 Score=69.54 Aligned_cols=68 Identities=32% Similarity=0.404 Sum_probs=49.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|.++++ ++..+|+.+..+.+|+.|++++ +.++++|.++. ++++- +.+..+|.+++.++.|+.||+..+
T Consensus 38 LtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 38 LTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcccc
Confidence 345654 5777788888888888888887 57777887665 55553 566777888888888888877664
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.21 E-value=2.1e-07 Score=66.38 Aligned_cols=66 Identities=30% Similarity=0.515 Sum_probs=41.5
Q ss_pred ccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCC
Q 045006 12 SLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDE 81 (167)
Q Consensus 12 ~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 81 (167)
++|. +.++.++..|.+|+ +++..+|..+. +++++ +.++.+|.+++.++.|+.|++.- +.+..+|.+
T Consensus 25 ~~~g-Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprg 97 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRG 97 (264)
T ss_pred hccc-ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccc
Confidence 4443 55566677777777 46666666654 56665 56677777777777777777754 445445544
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=1.2e-06 Score=76.95 Aligned_cols=70 Identities=33% Similarity=0.433 Sum_probs=57.4
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
+||+++|..+.++|++++.|-+|++|++++ +.++.+|.+++ |++..+..+..+|.....+++|++|.+..
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 588999888999999999999999999998 78889998877 78877776667766555688888888865
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.02 E-value=1e-06 Score=73.82 Aligned_cols=112 Identities=24% Similarity=0.385 Sum_probs=66.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC-
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS- 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~- 73 (167)
+|++. +++..+|+.+.++.+|+.|++|+ +.++.+....+ |+++. +.+..+|..+..++.|+.|.+.++.
T Consensus 227 vDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 227 VDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcc
Confidence 45664 46778888888888888888888 46666554433 77777 5666666666666666666555432
Q ss_pred CCccCCCCC---------------------------ccCccccccccccccCCCC---ccccccccccCCccch
Q 045006 74 NLHRLPDEH---------------------------SIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALE 117 (167)
Q Consensus 74 ~l~~lp~~~---------------------------~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~ 117 (167)
....+|+++ .|+.|.+ +|+.+.++|+. ++.++.|++++.++|.
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCcCcc
Confidence 123345443 3333333 33445555543 4566666776666654
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.84 E-value=1.4e-06 Score=71.91 Aligned_cols=100 Identities=27% Similarity=0.424 Sum_probs=48.2
Q ss_pred CCccCcccCCCCCCCEEeccCCCCCccCCCCce------EEecCCCCCccCCccCCCCCCCCeeeecCC-----------
Q 045006 10 LKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS----------- 72 (167)
Q Consensus 10 l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c----------- 72 (167)
+..+|+.+.++..|.++|++. +.+..+|..+. +-+++ ++++.+|+.++.+..|..|+.+.|
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence 344555555555555555555 34444444433 22232 444444444444444444444432
Q ss_pred -----------CCCccCCCCC---ccCccccccccccccCCCCcc---ccccccccC
Q 045006 73 -----------SNLHRLPDEH---SIPNKNLNYSERLQSRPKLPS---NLEWLLAHR 112 (167)
Q Consensus 73 -----------~~l~~lp~~~---~L~~l~l~~c~~l~~l~~~~~---~L~~L~l~~ 112 (167)
+.+..+|.+. .|..|++ .|+++..||..+. .|++|.+.+
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~LpLi~lDf-ScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSLPLIRLDF-SCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCCceeeeec-ccCceeecchhhhhhhhheeeeecc
Confidence 2334444332 4444555 4677777876543 444444443
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.81 E-value=2.9e-06 Score=67.60 Aligned_cols=93 Identities=32% Similarity=0.440 Sum_probs=62.1
Q ss_pred CCCccCcccCCCCCCCEEeccCCCCCccCCCCce------EEecCCCCCccCCccCC-CCCCCCeeeecCCCCCccCCCC
Q 045006 9 ILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV------LIRCGCKRLKSLPSSIC-QLKPLQVLNLHGSSNLHRLPDE 81 (167)
Q Consensus 9 ~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~------L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~ 81 (167)
.++.+|+.++.+.+|..|++.. +++..+|+.-+ +.++. +.++.+|.+.. ++.++..||+++ ++++++|.+
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchH
Confidence 4667777777777777777777 46666663222 45554 55666776655 778888888888 578888877
Q ss_pred C----ccCccccccccccccCCCCcccc
Q 045006 82 H----SIPNKNLNYSERLQSRPKLPSNL 105 (167)
Q Consensus 82 ~----~L~~l~l~~c~~l~~l~~~~~~L 105 (167)
. +|..|++++ +.+..+|..++++
T Consensus 271 ~clLrsL~rLDlSN-N~is~Lp~sLgnl 297 (565)
T KOG0472|consen 271 ICLLRSLERLDLSN-NDISSLPYSLGNL 297 (565)
T ss_pred HHHhhhhhhhcccC-CccccCCcccccc
Confidence 5 566777765 3467777665543
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.81 E-value=3.9e-06 Score=66.93 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=41.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce------EEecCCCCCccCCcc-CCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~ 74 (167)
|+++++ .+.++|.+++.+..|+.||++.+ .+..+|..+. ..+.+.+.++.+|++ ++++.+|.+||+.+ +.
T Consensus 440 L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Nd 516 (565)
T KOG0472|consen 440 LDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-ND 516 (565)
T ss_pred eecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-Cc
Confidence 445543 45666666666666666666663 5555555433 223333455555554 56666666666654 34
Q ss_pred CccCCCC
Q 045006 75 LHRLPDE 81 (167)
Q Consensus 75 l~~lp~~ 81 (167)
+..+|..
T Consensus 517 lq~IPp~ 523 (565)
T KOG0472|consen 517 LQQIPPI 523 (565)
T ss_pred hhhCChh
Confidence 5555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.70 E-value=2.9e-05 Score=60.08 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=14.7
Q ss_pred EEecCCCCCc----cCCccCCCCCCCCeeeecCC
Q 045006 43 LIRCGCKRLK----SLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 43 L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c 72 (167)
+++++|.... .++..+..+.+|++|++++|
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 5666554321 22333444456666666664
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.62 E-value=6.1e-06 Score=71.41 Aligned_cols=95 Identities=28% Similarity=0.478 Sum_probs=63.6
Q ss_pred cCCCCCCCEEeccCCCCCccCCCCce--------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCCC---ccC
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPESRV--------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEH---SIP 85 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~~~--------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~---~L~ 85 (167)
+.+.++|+.|++++ +.+.++|++.- |++++ +.++.+|+.+.++..|++|...+ +.+..+|+.. +|+
T Consensus 379 l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcce
Confidence 66778888888888 56777776432 78887 67788888777888888887766 5677777543 444
Q ss_pred ccccccccccccC--CC-Cc-cccccccccCCcc
Q 045006 86 NKNLNYSERLQSR--PK-LP-SNLEWLLAHRCTA 115 (167)
Q Consensus 86 ~l~l~~c~~l~~l--~~-~~-~~L~~L~l~~c~~ 115 (167)
.+++ .|++++.+ |. .+ ++|++|+++|-+.
T Consensus 456 ~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEec-ccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 5555 34555433 22 24 6788888877654
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=8.4e-05 Score=43.73 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=34.5
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCCceEEecCCCCCccCC-ccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLP-SSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 73 (167)
|++++| .++.+|. .+..+++|++|++++| .+..+| ..+.++++|++|++++|.
T Consensus 6 L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N------------------~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 6 LDLSNN-KLTEIPPDSFSNLPNLETLDLSNN------------------NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp EEETSS-TESEECTTTTTTGTTESEEEETSS------------------SESEEETTTTTTSTTESEEEETSSS
T ss_pred EECCCC-CCCccCHHHHcCCCCCCEeEccCC------------------ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 566665 5666664 4456677777777653 333343 467788899999998863
No 23
>PLN03150 hypothetical protein; Provisional
Probab=97.59 E-value=0.0001 Score=62.88 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=65.0
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCC-CCCCeeeecCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQL-KPLQVLNLHGS 72 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c 72 (167)
+|++++|...+.+|..++.+++|+.|++++|...+.+|..++ |++++|...+.+|..++.+ .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 378888876678999999999999999999877778888765 9999988888999988764 56788999987
Q ss_pred CCCccCC
Q 045006 73 SNLHRLP 79 (167)
Q Consensus 73 ~~l~~lp 79 (167)
..+...|
T Consensus 526 ~~lc~~p 532 (623)
T PLN03150 526 AGLCGIP 532 (623)
T ss_pred ccccCCC
Confidence 6665544
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.58 E-value=2.3e-05 Score=68.01 Aligned_cols=76 Identities=37% Similarity=0.511 Sum_probs=52.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|+++++ .+..+|..+..+.+|+.|+++. +.+.+.|.+.. +++.. +.+..+|.++..+.+|++|++++ +.
T Consensus 50 l~lsnn-~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~-N~ 125 (1081)
T KOG0618|consen 50 LDLSNN-QISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSF-NH 125 (1081)
T ss_pred eecccc-ccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccch-hc
Confidence 556643 5666776677777777777776 56666665544 56664 67788888888888888888888 45
Q ss_pred CccCCCC
Q 045006 75 LHRLPDE 81 (167)
Q Consensus 75 l~~lp~~ 81 (167)
+..+|.-
T Consensus 126 f~~~Pl~ 132 (1081)
T KOG0618|consen 126 FGPIPLV 132 (1081)
T ss_pred cCCCchh
Confidence 5555543
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.50 E-value=1.3e-05 Score=66.64 Aligned_cols=119 Identities=24% Similarity=0.251 Sum_probs=59.8
Q ss_pred ccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCCCCC----
Q 045006 16 EIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEH---- 82 (167)
Q Consensus 16 ~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~---- 82 (167)
++..++.|+.|++|. +.+..|. +++. |++++ +.+..+|+ ++..+..|++|.++. +.+..+.++.
T Consensus 288 ~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGL 364 (873)
T ss_pred cccccchhhhhccch-hhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHh
Confidence 455666666666666 3444432 1111 66666 44555543 444555666666665 3444443332
Q ss_pred -ccCcccccccccc---cc--CC-CCccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 83 -SIPNKNLNYSERL---QS--RP-KLPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 83 -~L~~l~l~~c~~l---~~--l~-~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
+|+.|+++....- +. .+ ..+++|+.|++.| .+|+.++....+..+.|++|++.+-
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 4555554433211 11 11 1255667777666 3566664444444455666666554
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00014 Score=40.11 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCCCEEeccCCCCCccCCCCceEEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCC
Q 045006 21 ELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLP 79 (167)
Q Consensus 21 ~~L~~L~ls~c~~l~~lp~~~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 79 (167)
++|++|++++ +.+..+|..++++++|+.|++++| .+.+++
T Consensus 1 ~~L~~L~l~~------------------N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN------------------NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS------------------SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC------------------CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 3567777776 355667777899999999999996 565543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.42 E-value=1.7e-05 Score=65.67 Aligned_cols=94 Identities=26% Similarity=0.435 Sum_probs=70.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
.+++.+ ...++|..+..+..|+.+.++. +.+..+|..+. ++++. +.+..+|..+..|+ |+.|-+++ ++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nk 154 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NK 154 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-Cc
Confidence 355654 5678998888888899998887 56778888776 88887 67889999887776 99999988 68
Q ss_pred CccCCCCC----ccCccccccccccccCCCC
Q 045006 75 LHRLPDEH----SIPNKNLNYSERLQSRPKL 101 (167)
Q Consensus 75 l~~lp~~~----~L~~l~l~~c~~l~~l~~~ 101 (167)
++.+|.++ .|..++.+.| .++++|..
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsq 184 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ 184 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHH
Confidence 99999875 4455555444 45666644
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.33 E-value=0.00032 Score=58.72 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=27.9
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCCce
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPESRV 42 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~~~ 42 (167)
|+++++ .+.++. ..+.++++|+.+++.. +.++.+|...+
T Consensus 83 LdlsnN-kl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~ 122 (873)
T KOG4194|consen 83 LDLSNN-KLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGH 122 (873)
T ss_pred eecccc-ccccCcHHHHhcCCcceeeeecc-chhhhcccccc
Confidence 677765 466654 4567889999999988 57778886443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.31 E-value=0.00017 Score=51.81 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=9.4
Q ss_pred CCccCcccCCCCCCCEEeccCCCCCccCC---CC---ce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccC
Q 045006 10 LKSLPAEIFLLELLKKLNFSGCSKLKRLP---ES---RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRL 78 (167)
Q Consensus 10 l~~lp~~~~~l~~L~~L~ls~c~~l~~lp---~~---~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 78 (167)
+++.|. +.+...+++|+++++ .++.+. .. +. |++++ +.++.++ .+..++.|+.|++++ +.++++
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i 79 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSN-NRISSI 79 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--S-S---S-
T ss_pred cccccc-ccccccccccccccc-ccccccchhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCC-CCCCcc
Confidence 334443 334445666666663 333321 11 11 66665 3455554 355566677777766 345444
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.31 E-value=0.00019 Score=39.53 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=29.7
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLP 38 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp 38 (167)
+|+++++ .++++|+.++++++|++|++++| .++++|
T Consensus 5 ~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 5 ELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp EEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred EEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4789987 68899998999999999999996 566654
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.22 E-value=0.00017 Score=63.62 Aligned_cols=69 Identities=35% Similarity=0.461 Sum_probs=52.4
Q ss_pred CccCcc-cCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCC
Q 045006 11 KSLPAE-IFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPD 80 (167)
Q Consensus 11 ~~lp~~-~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 80 (167)
..++.. +..++.|+.||+++|..+..+|.+++ |++++ ..+..+|.++++|..|.+|++..+..+..+|.
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccc
Confidence 334433 45688888888888888888888877 77777 67778888888888888888887766666643
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.21 E-value=7.8e-05 Score=57.72 Aligned_cols=99 Identities=17% Similarity=-0.021 Sum_probs=50.5
Q ss_pred cccCCCCCCCEEeccCCCCCccC-------CCC--ce-EEecCCCCCc----cCCccCCCC-CCCCeeeecCCCCCc---
Q 045006 15 AEIFLLELLKKLNFSGCSKLKRL-------PES--RV-LIRCGCKRLK----SLPSSICQL-KPLQVLNLHGSSNLH--- 76 (167)
Q Consensus 15 ~~~~~l~~L~~L~ls~c~~l~~l-------p~~--~~-L~l~~c~~l~----~lp~~l~~l-~~L~~L~l~~c~~l~--- 76 (167)
..+..+++|+.|++++|...... +.. +. |++++|.... .+...+..+ ++|+.|++++|..-.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34556677778887776553221 121 33 7777754321 223344555 778888888864321
Q ss_pred -c----CCCCCccCcccccccccc----ccCCCC---ccccccccccCC
Q 045006 77 -R----LPDEHSIPNKNLNYSERL----QSRPKL---PSNLEWLLAHRC 113 (167)
Q Consensus 77 -~----lp~~~~L~~l~l~~c~~l----~~l~~~---~~~L~~L~l~~c 113 (167)
. ++....++.+++++|.-- ..++.. .++|+.|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 1 111125666666665421 111111 136666666665
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.93 E-value=0.00071 Score=54.32 Aligned_cols=69 Identities=32% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCccCcccCCCC-CCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCC
Q 045006 9 ILKSLPAEIFLLE-LLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPD 80 (167)
Q Consensus 9 ~l~~lp~~~~~l~-~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 80 (167)
.+.++|+....+. +|+.|++++ +.+..+|..++ |++++ +.+..+|...+..++|+.|++++ +.+..+|.
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~ 203 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPP 203 (394)
T ss_pred ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCch
Confidence 4556666555553 666666666 45555543222 55555 45555555544556666666666 35555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.87 E-value=0.00071 Score=54.31 Aligned_cols=132 Identities=30% Similarity=0.333 Sum_probs=79.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCc-e------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESR-V------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~-~------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|+++++ .+..+|..+..+++|+.|++++ +.+.++|... . +++++ +.+..+|..++....|+++.++++..
T Consensus 145 L~l~~N-~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 145 LDLSDN-KIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred cccccc-chhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcc
Confidence 556654 5777776688889999999988 4677777754 2 88888 67888888766667788888887533
Q ss_pred CccCCCCC---ccCccccccccccccCC---CCccccccccccCCccchhccccccccCCCccEEeecCCCC
Q 045006 75 LHRLPDEH---SIPNKNLNYSERLQSRP---KLPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 75 l~~lp~~~---~L~~l~l~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~ 140 (167)
+..+.... .+..+.+.+ ..+..++ ..+.+++.|+++++ .++++.. . .....++.+++++-..
T Consensus 222 ~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~-~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 222 IELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS-L-GSLTNLRELDLSGNSL 289 (394)
T ss_pred eecchhhhhcccccccccCC-ceeeeccchhccccccceeccccc-ccccccc-c-cccCccCEEeccCccc
Confidence 33222111 333333222 2233222 33556778877764 4555532 1 1113466666665443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.66 E-value=0.0015 Score=46.90 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=29.7
Q ss_pred EeecCCCCCCccCcccC-CCCCCCEEeccCCCCCccCCCCc-----e-EEecCCCCCccCCccC-CCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIF-LLELLKKLNFSGCSKLKRLPESR-----V-LIRCGCKRLKSLPSSI-CQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~-~l~~L~~L~ls~c~~l~~lp~~~-----~-L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 73 (167)
|++.++ .++.+.. ++ .+.+|+.|++++| .++.++.-- . |++++ +.++.+++.+ ..+++|++|++++ +
T Consensus 24 L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N 98 (175)
T PF14580_consen 24 LNLRGN-QISTIEN-LGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-N 98 (175)
T ss_dssp -------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S
T ss_pred cccccc-ccccccc-hhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-C
Confidence 567776 4555543 55 5789999999994 666665321 1 89998 6778886655 3689999999998 4
Q ss_pred CCccCCCC------CccCcccccccc
Q 045006 74 NLHRLPDE------HSIPNKNLNYSE 93 (167)
Q Consensus 74 ~l~~lp~~------~~L~~l~l~~c~ 93 (167)
.+.++..- .+|+.|.+.+++
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCChHHhHHHHcCCCcceeeccCCc
Confidence 56554332 145555555544
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=3.8e-05 Score=59.27 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=6.7
Q ss_pred CCCCCCCeeeecCC
Q 045006 59 CQLKPLQVLNLHGS 72 (167)
Q Consensus 59 ~~l~~L~~L~l~~c 72 (167)
.+++.|..|++++|
T Consensus 257 ~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 257 SSCSRLDELNLSWC 270 (419)
T ss_pred HhhhhHhhcCchHh
Confidence 34444555555554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.32 E-value=0.0037 Score=36.55 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=21.1
Q ss_pred CCccCC-ccCCCCCCCCeeeecCCCCCccCCCC
Q 045006 50 RLKSLP-SSICQLKPLQVLNLHGSSNLHRLPDE 81 (167)
Q Consensus 50 ~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~ 81 (167)
.+..+| ..+..+++|++|++++ +.++.++..
T Consensus 12 ~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~ 43 (61)
T PF13855_consen 12 KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPD 43 (61)
T ss_dssp TESEECTTTTTTGTTESEEEETS-SSESEEETT
T ss_pred CCCccCHHHHcCCCCCCEeEccC-CccCccCHH
Confidence 444455 3667889999999997 456666544
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.98 E-value=0.00063 Score=47.07 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=55.4
Q ss_pred EeecCCCCCCccCccc---CCCCCCCEEeccCCCCCccCCCCce--------EEecCCCCCccCCccCCCCCCCCeeeec
Q 045006 2 LNLGGCEILKSLPAEI---FLLELLKKLNFSGCSKLKRLPESRV--------LIRCGCKRLKSLPSSICQLKPLQVLNLH 70 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~---~~l~~L~~L~ls~c~~l~~lp~~~~--------L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 70 (167)
++++.|. +..+++.+ .....|+..++++ +.++++|..+. +++++ +.+.++|+++..++.|+.++++
T Consensus 32 ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 32 LDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred cccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccc
Confidence 5677774 66666543 3445677779998 57888887654 78887 7889999999999999999999
Q ss_pred CCCCCccCCC
Q 045006 71 GSSNLHRLPD 80 (167)
Q Consensus 71 ~c~~l~~lp~ 80 (167)
.+ .+..+|.
T Consensus 109 ~N-~l~~~p~ 117 (177)
T KOG4579|consen 109 FN-PLNAEPR 117 (177)
T ss_pred cC-ccccchH
Confidence 84 4544443
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.44 E-value=0.0012 Score=53.15 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=38.8
Q ss_pred CCCeeeecCCCCCccCCCC------CccCccccccccccccC-----CCCccccccccccCCccchhc-cccccccCCCc
Q 045006 63 PLQVLNLHGSSNLHRLPDE------HSIPNKNLNYSERLQSR-----PKLPSNLEWLLAHRCTALESG-LIFSISYESPL 130 (167)
Q Consensus 63 ~L~~L~l~~c~~l~~lp~~------~~L~~l~l~~c~~l~~l-----~~~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l 130 (167)
.|+.|.++||..++.=+.. .++++|.+.+|.++++- ....+++++++++.|+++++. +......++++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4555666665433321111 14444455555544321 223455555555555555555 44444444555
Q ss_pred cEEeecCCCCCCH
Q 045006 131 RHFDLSGDFKLDR 143 (167)
Q Consensus 131 ~~l~~~~C~~l~~ 143 (167)
+.++++.|+.++.
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 5555555555544
No 40
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.41 E-value=0.01 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=10.4
Q ss_pred CCCCEEeccCCCCCccCC
Q 045006 21 ELLKKLNFSGCSKLKRLP 38 (167)
Q Consensus 21 ~~L~~L~ls~c~~l~~lp 38 (167)
++|+.|++++|. +.++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 468999999976 77665
No 41
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.006 Score=28.20 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=11.9
Q ss_pred CCCEEeccCCCCCccCCCC
Q 045006 22 LLKKLNFSGCSKLKRLPES 40 (167)
Q Consensus 22 ~L~~L~ls~c~~l~~lp~~ 40 (167)
+|++||+++| .++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4677888876 55566654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.88 E-value=0.0053 Score=47.86 Aligned_cols=54 Identities=30% Similarity=0.511 Sum_probs=35.3
Q ss_pred CCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc
Q 045006 20 LELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR 77 (167)
Q Consensus 20 l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 77 (167)
...|+++|+|+ +.++.+.++.. |++++ +.+..+. .+..+++|+.||++++ .+.+
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~ 343 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQ-NLAELPQLQLLDLSGN-LLAE 343 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeeh-hhhhcccceEeecccc-hhHh
Confidence 45677788887 46666555443 77777 4555554 3667788888888884 3433
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.0037 Score=48.57 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=65.0
Q ss_pred cCCCCCCCCeeeecCCCCCccCCCC------CccCccccccccccccCC-----CCccccccccccCCc-cchhc-cccc
Q 045006 57 SICQLKPLQVLNLHGSSNLHRLPDE------HSIPNKNLNYSERLQSRP-----KLPSNLEWLLAHRCT-ALESG-LIFS 123 (167)
Q Consensus 57 ~l~~l~~L~~L~l~~c~~l~~lp~~------~~L~~l~l~~c~~l~~l~-----~~~~~L~~L~l~~c~-~L~~~-~~~~ 123 (167)
.+..=.+|+.+++++|+.+++.... ..|.+|+++.|-..+..- ..-+++..|+++||. +|..- +.-+
T Consensus 229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 4445578999999999988765433 277777888876544331 124578888888875 33333 4455
Q ss_pred cccCCCccEEeecCCCCCCHHHHhcHHH
Q 045006 124 ISYESPLRHFDLSGDFKLDRNEVRGIVE 151 (167)
Q Consensus 124 ~~~~~~l~~l~~~~C~~l~~~~~~~~~~ 151 (167)
...++.+.+|++++|..++......+..
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHh
Confidence 6667788888999998888876665544
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.40 E-value=0.024 Score=45.88 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=7.6
Q ss_pred CCCCCeeeecCCCCC
Q 045006 61 LKPLQVLNLHGSSNL 75 (167)
Q Consensus 61 l~~L~~L~l~~c~~l 75 (167)
..+|+.+.+.+|..+
T Consensus 319 ~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQF 333 (483)
T ss_pred CCceEEEeccccchh
Confidence 345555555555443
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.021 Score=46.41 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=13.6
Q ss_pred EEecCCCCCc-cCCccCCCCCCCCeeeecCC
Q 045006 43 LIRCGCKRLK-SLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 43 L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c 72 (167)
|.+++|..-. ++-.....+++|+.|++.++
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 5555553321 12222234455566666554
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.07 E-value=0.022 Score=45.85 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=44.3
Q ss_pred CCCccCCCCce-----EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCCCCC-----ccCccccccccccccCCC
Q 045006 32 SKLKRLPESRV-----LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEH-----SIPNKNLNYSERLQSRPK 100 (167)
Q Consensus 32 ~~l~~lp~~~~-----L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~-----~L~~l~l~~c~~l~~l~~ 100 (167)
..+.++|..+. +.+.. +.++.+|+ .++.+.+|+.||++. +.+..+.... ++.++.+-+.++++.+|.
T Consensus 56 ~GL~eVP~~LP~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccCCCcceEEEecc-CCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34555665554 77777 67788876 667888899999988 4666554432 455555556667777774
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.04 E-value=0.013 Score=45.83 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=42.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
+|++++ .++.+.+++.-++.++.|++|.+ .+..+.. ++. ||+++ +.+..+.-+--.+-+++.|.+++ +.+
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~-N~i 364 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQ-NKI 364 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhh-hhH
Confidence 577775 57788887888888888888884 3332221 111 77777 44444432222344556666666 344
Q ss_pred ccC
Q 045006 76 HRL 78 (167)
Q Consensus 76 ~~l 78 (167)
+++
T Consensus 365 E~L 367 (490)
T KOG1259|consen 365 ETL 367 (490)
T ss_pred hhh
Confidence 443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.00 E-value=0.021 Score=46.48 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=27.1
Q ss_pred ccccccccccCCccchhc-cccccccCCCccEEeecCCCCCCHHHHhcH
Q 045006 102 PSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLDRNEVRGI 149 (167)
Q Consensus 102 ~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~~~~~~~~ 149 (167)
.++|+.|.+.+|..+++. +......++.|++++++.|..+++.....+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 345666666666665555 444444445566666666666655544444
No 49
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.33 E-value=0.11 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.1
Q ss_pred CCccEEeecCCCCCCHHHHhcHH
Q 045006 128 SPLRHFDLSGDFKLDRNEVRGIV 150 (167)
Q Consensus 128 ~~l~~l~~~~C~~l~~~~~~~~~ 150 (167)
+.|+.|++++|+++++.....+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 45788899999999888776654
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=92.68 E-value=0.031 Score=45.05 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCCccCc-ccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 9 ILKSLPA-EIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 9 ~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
.++.||+ .++.+.+|+.||+|+ +.++.|. ..+. +-+.+.+.++.+|. .++.|.+|+.|.+.-
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred CcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4666665 345666777777776 3454442 2222 22333345555554 344555555555533
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.012 Score=43.17 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=38.6
Q ss_pred cCcccccccccc-----ccCCCCccccccccccCCccchhc-cccccccCCCccEEeecCCCCCCHHH-HhcHHHHHHHH
Q 045006 84 IPNKNLNYSERL-----QSRPKLPSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLDRNE-VRGIVEDALQD 156 (167)
Q Consensus 84 L~~l~l~~c~~l-----~~l~~~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~~~~-~~~~~~~~~~~ 156 (167)
++.+.+.+|+.+ +.+-+..++|+.|++++|+.+++- +..+.. .++|+.+.+.+-+...... .......+..+
T Consensus 127 i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~ 205 (221)
T KOG3864|consen 127 IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYDLPYVANLELVQRQLEEALPK 205 (221)
T ss_pred hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcCchhhhchHHHHHHHHHhCcc
Confidence 333444455443 344445667777777777777776 222211 2346666666665554332 22222334445
Q ss_pred HHHH
Q 045006 157 MQLL 160 (167)
Q Consensus 157 ~~~~ 160 (167)
+.+.
T Consensus 206 c~I~ 209 (221)
T KOG3864|consen 206 CDIV 209 (221)
T ss_pred ccee
Confidence 5444
No 52
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=0.15 Score=37.53 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=39.9
Q ss_pred ccccccccccCCccchhc-cccccccCCCccEEeecCCCCCCHHHHhcHHHH
Q 045006 102 PSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLDRNEVRGIVED 152 (167)
Q Consensus 102 ~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~~~~~~~~~~~ 152 (167)
..+++.|.+.+|..+.+. +........+|+.|++++|+.+++....-+..-
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 356788899999999988 554444556899999999999999877655544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.45 E-value=0.026 Score=39.27 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=55.5
Q ss_pred EeecCCCCCCccCcccCC-CCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFL-LELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~-l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
.+++++ .++++|+.+.. .+.++.|++++ +.+.++|.++. ++++. +.+...|..+..+.++-+|+..+ +
T Consensus 58 i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~-n 133 (177)
T KOG4579|consen 58 ISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPE-N 133 (177)
T ss_pred Eecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCC-C
Confidence 356765 58889887654 45899999998 68999998765 88888 56677787777788888888877 3
Q ss_pred CCccCC
Q 045006 74 NLHRLP 79 (167)
Q Consensus 74 ~l~~lp 79 (167)
....+|
T Consensus 134 a~~eid 139 (177)
T KOG4579|consen 134 ARAEID 139 (177)
T ss_pred ccccCc
Confidence 444444
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.70 E-value=0.082 Score=45.96 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCCCCCCCeeeecCCCCCccCCCC---CccCcccccccc-----ccccCCCCccccccccccCCcc
Q 045006 58 ICQLKPLQVLNLHGSSNLHRLPDE---HSIPNKNLNYSE-----RLQSRPKLPSNLEWLLAHRCTA 115 (167)
Q Consensus 58 l~~l~~L~~L~l~~c~~l~~lp~~---~~L~~l~l~~c~-----~l~~l~~~~~~L~~L~l~~c~~ 115 (167)
..++++|..||++++ +++.+..- .+|+.|.+.+.+ .+..+ -.+.+|+.||++.-.+
T Consensus 169 c~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 169 CASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKN 232 (699)
T ss_pred hhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeecccccc
Confidence 356778888888884 45544211 123333222221 11111 1256888888886443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.87 E-value=0.21 Score=43.56 Aligned_cols=109 Identities=24% Similarity=0.315 Sum_probs=63.1
Q ss_pred EeecCCCCCC-ccCcccC-CCCCCCEEeccCCCCCc--------cCCCCceEEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILK-SLPAEIF-LLELLKKLNFSGCSKLK--------RLPESRVLIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~-~lp~~~~-~l~~L~~L~ls~c~~l~--------~lp~~~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|+++|-..+. .-|..++ .+++|++|.+++=.... ++|.-..||+++ .+++.+ .+++++++|+.|.+++
T Consensus 127 LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 127 LDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred cCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccC
Confidence 5565543222 2233343 57889999888722111 234333399998 577777 6788999999998876
Q ss_pred CCCCc-----cCCCCCccCccccccccccccC---------CCCccccccccccC
Q 045006 72 SSNLH-----RLPDEHSIPNKNLNYSERLQSR---------PKLPSNLEWLLAHR 112 (167)
Q Consensus 72 c~~l~-----~lp~~~~L~~l~l~~c~~l~~l---------~~~~~~L~~L~l~~ 112 (167)
-.... .+-.-.+|+.|+++.-.+...- ...+++|+.||.++
T Consensus 205 Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 205 LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 32211 1211237778887764433211 12356788887775
No 56
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.49 E-value=0.36 Score=22.80 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=15.1
Q ss_pred CCCCCEEeccCCCCCccCCCC
Q 045006 20 LELLKKLNFSGCSKLKRLPES 40 (167)
Q Consensus 20 l~~L~~L~ls~c~~l~~lp~~ 40 (167)
+++|++|++++| .++.+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 467899999984 77777753
No 57
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.49 E-value=0.36 Score=22.80 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=15.1
Q ss_pred CCCCCEEeccCCCCCccCCCC
Q 045006 20 LELLKKLNFSGCSKLKRLPES 40 (167)
Q Consensus 20 l~~L~~L~ls~c~~l~~lp~~ 40 (167)
+++|++|++++| .++.+|..
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 467899999984 77777753
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.39 E-value=0.89 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=8.9
Q ss_pred CCCCCCCEEeccCCCCCccC
Q 045006 18 FLLELLKKLNFSGCSKLKRL 37 (167)
Q Consensus 18 ~~l~~L~~L~ls~c~~l~~l 37 (167)
..+..|.+|.+++ +.+..+
T Consensus 61 p~l~rL~tLll~n-NrIt~I 79 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-NRITRI 79 (233)
T ss_pred CCccccceEEecC-Ccceee
Confidence 3345555555554 334433
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.35 E-value=0.039 Score=47.87 Aligned_cols=65 Identities=29% Similarity=0.287 Sum_probs=35.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC------ce-EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES------RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~------~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|+++++ ++.... .+..++.|++||++. +.+..+|.- ++ |++++ +-++.+- ++.+|.+|+.||++.
T Consensus 192 LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 192 LNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY 263 (1096)
T ss_pred hccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH
Confidence 455554 233333 255566666666666 345544431 11 55655 3444442 466777777777776
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.22 E-value=1.6 Score=28.72 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=26.6
Q ss_pred CccCCc-cCCCCCCCCeeeecCCCCCccCCCCCccCccccccccccccC--CCCccccccccccCCccchhc-ccccccc
Q 045006 51 LKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLNYSERLQSR--PKLPSNLEWLLAHRCTALESG-LIFSISY 126 (167)
Q Consensus 51 l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~~c~~l~~l--~~~~~~L~~L~l~~c~~L~~~-~~~~~~~ 126 (167)
+..++. .+.++.+++.+.+.+ .+..++.. .+..|..++.+ |.....+..-...+| +++.+ ... .
T Consensus 46 ~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~------~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~---~ 113 (129)
T PF13306_consen 46 LTSIGDNAFSNCKSLESITFPN--NLKSIGDN------AFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPS---N 113 (129)
T ss_dssp TSCE-TTTTTT-TT-EEEEETS--TT-EE-TT------TTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TT---B
T ss_pred ccccceeeeecccccccccccc--cccccccc------cccccccccccccCccccEEchhhhcCC-CceEEEECC---C
Confidence 444443 345555677777754 34334332 24445555433 222223333345555 66655 221 1
Q ss_pred CCCccEEeecCCCCCC
Q 045006 127 ESPLRHFDLSGDFKLD 142 (167)
Q Consensus 127 ~~~l~~l~~~~C~~l~ 142 (167)
...+....|.+|++|+
T Consensus 114 ~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 114 ITKIEENAFKNCTKLK 129 (129)
T ss_dssp -SS----GGG------
T ss_pred ccEECCccccccccCC
Confidence 1235566778887764
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.03 E-value=0.53 Score=38.28 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=5.7
Q ss_pred CCCCCCCEEeccC
Q 045006 18 FLLELLKKLNFSG 30 (167)
Q Consensus 18 ~~l~~L~~L~ls~ 30 (167)
..+++|..+++.+
T Consensus 92 ~~~~~l~~l~l~~ 104 (414)
T KOG0531|consen 92 SKLKSLEALDLYD 104 (414)
T ss_pred ccccceeeeeccc
Confidence 3344444444444
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.50 E-value=0.29 Score=39.81 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCCCeeeecCCCCCccCC---C---CCccCccccccc-cccccCC-------CCccccccccccCCccchhc-cccccc
Q 045006 61 LKPLQVLNLHGSSNLHRLP---D---EHSIPNKNLNYS-ERLQSRP-------KLPSNLEWLLAHRCTALESG-LIFSIS 125 (167)
Q Consensus 61 l~~L~~L~l~~c~~l~~lp---~---~~~L~~l~l~~c-~~l~~l~-------~~~~~L~~L~l~~c~~L~~~-~~~~~~ 125 (167)
++.|+.+.+.+|..+.... . ...|+.+++++| ......+ ....+++.+++..|..+.+. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5778888888876665422 1 127777777763 3222222 23468899999999888877 666666
Q ss_pred cCCCccEEeecCCCCCCHHHHhcHHHH
Q 045006 126 YESPLRHFDLSGDFKLDRNEVRGIVED 152 (167)
Q Consensus 126 ~~~~l~~l~~~~C~~l~~~~~~~~~~~ 152 (167)
.++.++.+.+.+|..+++.....+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHh
Confidence 678899999999999988888777664
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.30 E-value=0.52 Score=38.33 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=42.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC-----ce-EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-----RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-----~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++.++ .++.+...+..+++|++|++++ +.++++... +. |++++ +.+..++ .+..+.+|+.++++++
T Consensus 100 l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 100 LDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLLDLSYN 172 (414)
T ss_pred eecccc-chhhcccchhhhhcchheeccc-cccccccchhhccchhhheecc-Ccchhcc-CCccchhhhcccCCcc
Confidence 445554 4666665567788999999998 566655321 12 77776 4555554 3555777788888774
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=81.65 E-value=0.084 Score=45.93 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=11.8
Q ss_pred CCCccCcccCCCCCCCEEeccC
Q 045006 9 ILKSLPAEIFLLELLKKLNFSG 30 (167)
Q Consensus 9 ~l~~lp~~~~~l~~L~~L~ls~ 30 (167)
.+..+.+++.-++.++.||++.
T Consensus 175 ~L~~mD~SLqll~ale~LnLsh 196 (1096)
T KOG1859|consen 175 RLVLMDESLQLLPALESLNLSH 196 (1096)
T ss_pred hHHhHHHHHHHHHHhhhhccch
Confidence 3444444455555566666665
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=75.55 E-value=1.6 Score=35.92 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCCCCCCEEeccCCCCCcc------CCCCce-EEecCCCCCccCC--ccCCCCCCCCeeeecCC
Q 045006 18 FLLELLKKLNFSGCSKLKR------LPESRV-LIRCGCKRLKSLP--SSICQLKPLQVLNLHGS 72 (167)
Q Consensus 18 ~~l~~L~~L~ls~c~~l~~------lp~~~~-L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c 72 (167)
..+++|+.|++.+|..+.. ++..+. |+++++ .+...+ ..++.++.|+.|+++.|
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhhcccc
Confidence 3456677777776532221 122222 777763 334444 34566677777777664
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.35 E-value=2.4 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=8.2
Q ss_pred CCCCCEEeccCCC
Q 045006 20 LELLKKLNFSGCS 32 (167)
Q Consensus 20 l~~L~~L~ls~c~ 32 (167)
+++|++|++++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 3678999999875
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.63 E-value=6.3 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=17.3
Q ss_pred EEecCC--CCCccCCccCCCCCCCCeeeecCC
Q 045006 43 LIRCGC--KRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 43 L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|.++.+ .-...++....++++|++++++++
T Consensus 70 L~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 70 LELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred hcccCCcccccccceehhhhCCceeEEeecCC
Confidence 556554 223344444445577788888774
No 68
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.10 E-value=3.9 Score=19.65 Aligned_cols=18 Identities=50% Similarity=0.700 Sum_probs=12.4
Q ss_pred CCCCEEeccCCCCCccCCC
Q 045006 21 ELLKKLNFSGCSKLKRLPE 39 (167)
Q Consensus 21 ~~L~~L~ls~c~~l~~lp~ 39 (167)
.+|++|++++ +.+.++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 3577888887 45776664
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=67.14 E-value=25 Score=26.28 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCCC-----ccCcccccc
Q 045006 43 LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEH-----SIPNKNLNY 91 (167)
Q Consensus 43 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~-----~L~~l~l~~ 91 (167)
+|+++ +.+..++ .+..++.|.+|.+.+ +.+..+.... .++.|.+.+
T Consensus 47 iDLtd-Ndl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 47 IDLTD-NDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ecccc-cchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecC
Confidence 66666 4444444 355677788888876 4555554331 455555544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.70 E-value=10 Score=29.04 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=6.6
Q ss_pred CCCCCeeeecCC
Q 045006 61 LKPLQVLNLHGS 72 (167)
Q Consensus 61 l~~L~~L~l~~c 72 (167)
+++|+.|.++.+
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 455555655554
No 71
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.03 E-value=9.6 Score=18.21 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=11.8
Q ss_pred CCCCCEEeccCCCCCccC
Q 045006 20 LELLKKLNFSGCSKLKRL 37 (167)
Q Consensus 20 l~~L~~L~ls~c~~l~~l 37 (167)
+++|+.|++++ +.++.+
T Consensus 1 L~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CCccCEEECCC-Ccccee
Confidence 46788999988 455543
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.78 E-value=4.2 Score=32.18 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=9.4
Q ss_pred cCCCCCCCEEeccCC
Q 045006 17 IFLLELLKKLNFSGC 31 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c 31 (167)
..+++.|+.|+++.+
T Consensus 93 le~lP~l~~LNls~N 107 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCN 107 (418)
T ss_pred HhcCccceEeeccCC
Confidence 346666777777654
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.35 E-value=1.4 Score=34.39 Aligned_cols=68 Identities=26% Similarity=0.292 Sum_probs=37.3
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce------EEecCCCCCccCCc--cCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV------LIRCGCKRLKSLPS--SICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~------L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~ 73 (167)
|++.|| .+.++.- ...++.|+.|.+|- ++++++...-. |.+.. +.+.++.+ -+.++++|+.|.+..+.
T Consensus 24 LNcwg~-~L~DIsi-c~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 24 LNCWGC-GLDDISI-CEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccCC-CccHHHH-HHhcccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCC
Confidence 556666 3555543 35677788888887 45555432111 33333 22333322 34567778877776654
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=51.53 E-value=3.9 Score=32.72 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=70.4
Q ss_pred cCCCCCCCEEeccCCCCCccCCCC-----------ce-EEecCCCC----CccCCccCCCCCCCCeeeecCCCCC-----
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPES-----------RV-LIRCGCKR----LKSLPSSICQLKPLQVLNLHGSSNL----- 75 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~-----------~~-L~l~~c~~----l~~lp~~l~~l~~L~~L~l~~c~~l----- 75 (167)
+.+-+.|+++.... +.++.-+.. +. +.+..+.. ...+-..+..+++|+.||+++|..-
T Consensus 153 ~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 153 AASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 34456799998887 455554432 11 44443211 1112335677899999999996432
Q ss_pred ---ccCCCCCccCcccccccccc--------ccCCCCccccccccccCCccchhc----cccccccCCCccEEeecCCCC
Q 045006 76 ---HRLPDEHSIPNKNLNYSERL--------QSRPKLPSNLEWLLAHRCTALESG----LIFSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 76 ---~~lp~~~~L~~l~l~~c~~l--------~~l~~~~~~L~~L~l~~c~~L~~~----~~~~~~~~~~l~~l~~~~C~~ 140 (167)
..+|...+|+.+++++|..= ..+-...++|+.+.+.++. ++.- +.......+.+..|.+.+|.-
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 13454457888889888531 2333446788888887763 3322 222222234567777777754
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.49 E-value=12 Score=17.92 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=9.6
Q ss_pred CCCCEEeccCCC
Q 045006 21 ELLKKLNFSGCS 32 (167)
Q Consensus 21 ~~L~~L~ls~c~ 32 (167)
++|++||+++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 578999999853
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=39.06 E-value=1.1 Score=34.06 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 18 FLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 18 ~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
+.++.+..||++. +.+.-+|...+ ++... ++++..|.+.+..+.+++++.-++.
T Consensus 62 s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 62 SILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 3334444445444 34444555444 33333 5677788888888888888776643
Done!