Query 045006
Match_columns 167
No_of_seqs 184 out of 1505
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 1.6E-13 5.6E-18 106.3 10.2 139 2-144 132-293 (328)
2 4fcg_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 101.1 9.0 133 1-136 154-309 (328)
3 3m19_A Variable lymphocyte rec 99.1 9.3E-10 3.2E-14 81.7 12.8 134 2-141 40-192 (251)
4 2o6q_A Variable lymphocyte rec 99.1 1.3E-09 4.4E-14 81.8 12.7 79 58-139 129-216 (270)
5 2xwt_C Thyrotropin receptor; s 99.1 2.4E-10 8.3E-15 84.2 8.6 137 2-142 36-193 (239)
6 4ezg_A Putative uncharacterize 99.1 1.9E-10 6.5E-15 82.5 7.7 132 2-139 49-192 (197)
7 2xwt_C Thyrotropin receptor; s 99.1 2.9E-10 1E-14 83.7 8.8 135 1-138 59-215 (239)
8 1ozn_A Reticulon 4 receptor; N 99.1 9.5E-10 3.2E-14 82.9 11.5 109 2-113 61-187 (285)
9 1ozn_A Reticulon 4 receptor; N 99.1 1.1E-09 3.8E-14 82.6 11.8 108 2-113 37-163 (285)
10 3rfs_A Internalin B, repeat mo 99.1 2.2E-09 7.4E-14 80.7 12.4 133 2-141 68-218 (272)
11 1ogq_A PGIP-2, polygalacturona 99.1 9.7E-11 3.3E-15 89.9 5.0 70 2-71 55-134 (313)
12 3rgz_A Protein brassinosteroid 99.1 1.7E-10 5.7E-15 98.5 6.8 137 2-139 399-549 (768)
13 3rgz_A Protein brassinosteroid 99.0 7.5E-10 2.6E-14 94.5 10.0 61 12-72 457-524 (768)
14 3zyj_A Leucine-rich repeat-con 99.0 2.3E-09 7.7E-14 85.8 11.6 28 2-30 69-97 (440)
15 1p9a_G Platelet glycoprotein I 99.0 2.4E-09 8.2E-14 81.4 11.1 67 2-71 36-109 (290)
16 1ogq_A PGIP-2, polygalacturona 99.0 3E-10 1E-14 87.2 6.0 138 1-139 80-232 (313)
17 2o6q_A Variable lymphocyte rec 99.0 5.3E-09 1.8E-13 78.4 12.7 131 2-138 42-191 (270)
18 4eco_A Uncharacterized protein 99.0 1.6E-10 5.6E-15 96.7 4.5 59 13-71 239-314 (636)
19 2z80_A TOLL-like receptor 2, v 99.0 1.2E-09 4.1E-14 84.8 8.8 108 2-113 57-184 (353)
20 3zyi_A Leucine-rich repeat-con 99.0 3.7E-09 1.3E-13 84.8 11.8 67 2-71 80-156 (452)
21 3zyi_A Leucine-rich repeat-con 99.0 2.9E-09 1E-13 85.4 11.0 132 2-138 104-252 (452)
22 2z7x_B TOLL-like receptor 1, v 99.0 1.2E-09 4E-14 88.9 8.7 144 2-147 329-487 (520)
23 4eco_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 92.3 7.7 108 2-113 310-443 (636)
24 1jl5_A Outer protein YOPM; leu 99.0 5.8E-09 2E-13 84.1 12.3 106 1-113 135-247 (454)
25 3m19_A Variable lymphocyte rec 99.0 9.4E-09 3.2E-13 76.2 12.5 131 2-139 19-166 (251)
26 3vq2_A TLR4, TOLL-like recepto 99.0 1.1E-09 3.9E-14 90.5 8.2 124 17-141 420-558 (606)
27 3e6j_A Variable lymphocyte rec 99.0 1.5E-08 5.1E-13 74.3 12.9 130 3-140 25-171 (229)
28 3rfs_A Internalin B, repeat mo 99.0 9E-09 3.1E-13 77.3 11.7 131 2-139 46-192 (272)
29 1p9a_G Platelet glycoprotein I 99.0 1E-08 3.5E-13 77.9 11.9 132 2-141 60-208 (290)
30 3zyj_A Leucine-rich repeat-con 98.9 6.2E-09 2.1E-13 83.2 10.6 132 2-138 93-241 (440)
31 3vq2_A TLR4, TOLL-like recepto 98.9 2.1E-09 7.2E-14 88.8 8.0 136 2-139 381-532 (606)
32 1jl5_A Outer protein YOPM; leu 98.9 1.3E-08 4.4E-13 82.1 12.1 105 2-113 178-287 (454)
33 4ecn_A Leucine-rich repeat pro 98.9 7.3E-10 2.5E-14 95.9 4.6 84 53-139 562-655 (876)
34 2z80_A TOLL-like receptor 2, v 98.9 2E-09 6.8E-14 83.6 6.7 134 1-138 80-232 (353)
35 4ay9_X Follicle-stimulating ho 98.9 5.3E-09 1.8E-13 81.3 9.0 76 2-79 35-120 (350)
36 2v9t_B SLIT homolog 2 protein 98.9 2.7E-08 9.1E-13 72.6 12.3 132 2-140 16-164 (220)
37 3e6j_A Variable lymphocyte rec 98.9 1.3E-08 4.3E-13 74.7 10.6 108 1-113 44-169 (229)
38 2z66_A Variable lymphocyte rec 98.9 5.8E-09 2E-13 79.3 9.1 123 17-142 122-262 (306)
39 2z66_A Variable lymphocyte rec 98.9 2.7E-09 9.2E-14 81.2 7.2 134 2-139 83-234 (306)
40 2id5_A Lingo-1, leucine rich r 98.9 1.3E-08 4.3E-13 82.0 11.3 68 2-72 37-114 (477)
41 3g06_A SSPH2 (leucine-rich rep 98.9 1.6E-08 5.6E-13 84.6 12.1 102 2-113 45-151 (622)
42 4ecn_A Leucine-rich repeat pro 98.9 6.7E-09 2.3E-13 89.9 9.7 90 2-96 553-658 (876)
43 2ast_B S-phase kinase-associat 98.9 6.9E-11 2.4E-15 90.9 -2.5 10 129-138 273-282 (336)
44 3g06_A SSPH2 (leucine-rich rep 98.9 2.3E-08 7.9E-13 83.7 12.5 61 2-71 66-130 (622)
45 4ezg_A Putative uncharacterize 98.9 3.7E-09 1.3E-13 75.7 6.6 110 1-113 70-191 (197)
46 2z63_A TOLL-like receptor 4, v 98.9 3.1E-09 1.1E-13 87.0 6.9 139 2-142 378-532 (570)
47 3t6q_A CD180 antigen; protein- 98.9 1.7E-08 5.7E-13 83.5 11.3 70 2-72 283-360 (606)
48 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 7.5E-09 2.6E-13 85.1 9.0 141 2-145 358-514 (562)
49 2z7x_B TOLL-like receptor 1, v 98.9 3.3E-09 1.1E-13 86.2 6.8 120 18-139 321-455 (520)
50 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.1E-08 3.8E-13 84.1 10.0 133 2-139 336-484 (562)
51 1xku_A Decorin; proteoglycan, 98.9 2.5E-08 8.6E-13 76.6 11.3 57 14-72 93-155 (330)
52 3bz5_A Internalin-J, INLJ; leu 98.9 7.6E-09 2.6E-13 83.5 8.7 64 2-72 175-243 (457)
53 2z81_A CD282 antigen, TOLL-lik 98.9 6.4E-09 2.2E-13 84.9 8.3 108 2-113 31-158 (549)
54 3t6q_A CD180 antigen; protein- 98.8 1.3E-08 4.6E-13 84.0 9.9 109 2-113 38-163 (606)
55 2ast_B S-phase kinase-associat 98.8 1.5E-10 5.1E-15 89.1 -2.0 42 102-144 221-263 (336)
56 2o6s_A Variable lymphocyte rec 98.8 3.9E-08 1.3E-12 70.8 10.8 124 9-139 18-159 (208)
57 2ell_A Acidic leucine-rich nuc 98.8 5.1E-09 1.8E-13 72.9 5.8 116 20-140 23-159 (168)
58 2z62_A TOLL-like receptor 4, v 98.8 3.5E-08 1.2E-12 73.9 10.8 132 2-138 57-234 (276)
59 2z62_A TOLL-like receptor 4, v 98.8 2.9E-08 9.9E-13 74.4 9.9 108 2-113 33-159 (276)
60 2id5_A Lingo-1, leucine rich r 98.8 3.4E-08 1.2E-12 79.4 11.0 137 2-143 61-215 (477)
61 1h6u_A Internalin H; cell adhe 98.8 2.4E-08 8.3E-13 76.3 9.5 65 2-72 46-117 (308)
62 3cvr_A Invasion plasmid antige 98.8 4.4E-08 1.5E-12 81.2 11.5 32 106-139 210-241 (571)
63 1h6u_A Internalin H; cell adhe 98.8 2.8E-08 9.6E-13 76.0 9.6 129 1-139 67-206 (308)
64 2z81_A CD282 antigen, TOLL-lik 98.8 8.1E-09 2.8E-13 84.3 6.9 110 1-112 54-181 (549)
65 2ft3_A Biglycan; proteoglycan, 98.8 5.9E-08 2E-12 74.6 11.4 68 2-72 83-157 (332)
66 3j0a_A TOLL-like receptor 5; m 98.8 2E-08 6.9E-13 86.4 9.3 111 2-113 29-158 (844)
67 3v47_A TOLL-like receptor 5B a 98.8 1E-08 3.6E-13 81.8 6.8 121 21-143 275-410 (455)
68 2o6s_A Variable lymphocyte rec 98.8 2E-07 6.9E-12 67.0 13.0 114 1-119 32-170 (208)
69 3bz5_A Internalin-J, INLJ; leu 98.8 4.9E-08 1.7E-12 78.7 10.7 71 2-79 153-228 (457)
70 1h6t_A Internalin B; cell adhe 98.8 3.3E-08 1.1E-12 75.1 9.2 126 2-138 51-188 (291)
71 3cvr_A Invasion plasmid antige 98.8 7E-08 2.4E-12 80.0 11.6 121 1-138 84-217 (571)
72 1dce_A Protein (RAB geranylger 98.8 2E-08 6.9E-13 83.2 8.1 71 2-78 446-523 (567)
73 1w8a_A SLIT protein; signaling 98.8 7.1E-08 2.4E-12 68.8 9.9 106 2-112 13-135 (192)
74 3j0a_A TOLL-like receptor 5; m 98.8 7.3E-08 2.5E-12 83.0 11.8 113 1-114 52-185 (844)
75 2wfh_A SLIT homolog 2 protein 98.8 8.2E-08 2.8E-12 68.7 10.2 104 2-112 15-135 (193)
76 3v47_A TOLL-like receptor 5B a 98.7 3.7E-08 1.3E-12 78.6 9.2 110 2-113 280-405 (455)
77 4fmz_A Internalin; leucine ric 98.7 5.1E-08 1.7E-12 75.2 9.5 106 2-113 49-165 (347)
78 4g8a_A TOLL-like receptor 4; l 98.7 5.9E-08 2E-12 79.9 10.4 99 9-113 42-158 (635)
79 2v70_A SLIT-2, SLIT homolog 2 98.7 2E-07 6.9E-12 67.9 12.1 132 2-141 16-166 (220)
80 2je0_A Acidic leucine-rich nuc 98.7 1.3E-08 4.4E-13 69.5 5.0 67 2-71 22-97 (149)
81 1m9s_A Internalin B; cell inva 98.7 6.1E-08 2.1E-12 80.9 10.0 127 2-138 48-185 (605)
82 3o6n_A APL1; leucine-rich repe 98.7 6E-08 2E-12 76.1 9.4 88 2-92 50-151 (390)
83 1xku_A Decorin; proteoglycan, 98.7 1.6E-07 5.5E-12 72.1 11.5 123 14-140 164-305 (330)
84 3oja_B Anopheles plasmodium-re 98.7 1.1E-07 3.9E-12 78.8 11.2 68 2-72 80-157 (597)
85 3o6n_A APL1; leucine-rich repe 98.7 1.5E-07 5E-12 73.9 11.2 106 1-111 73-194 (390)
86 2z63_A TOLL-like receptor 4, v 98.7 8E-08 2.7E-12 78.6 10.0 109 2-113 33-159 (570)
87 3oja_B Anopheles plasmodium-re 98.7 1.5E-07 5.1E-12 78.1 11.5 76 1-79 103-187 (597)
88 1wwl_A Monocyte differentiatio 98.7 1.1E-08 3.8E-13 78.3 4.3 71 2-73 100-184 (312)
89 1xeu_A Internalin C; cellular 98.7 5E-08 1.7E-12 73.1 7.8 77 10-92 31-116 (263)
90 1xeu_A Internalin C; cellular 98.7 6.1E-08 2.1E-12 72.6 8.2 103 2-113 46-160 (263)
91 1wwl_A Monocyte differentiatio 98.7 2.5E-08 8.5E-13 76.3 6.1 130 2-138 126-284 (312)
92 2ft3_A Biglycan; proteoglycan, 98.7 2.6E-07 8.8E-12 71.0 11.7 128 2-138 107-274 (332)
93 4fmz_A Internalin; leucine ric 98.7 8E-08 2.7E-12 74.1 8.7 92 43-139 226-322 (347)
94 4b8c_D Glucose-repressible alc 98.7 1.8E-08 6.3E-13 85.6 5.4 87 2-92 229-326 (727)
95 2v70_A SLIT-2, SLIT homolog 2 98.7 1.5E-07 5.1E-12 68.6 9.5 107 2-113 37-163 (220)
96 4g8a_A TOLL-like receptor 4; l 98.7 8.7E-08 3E-12 78.9 9.1 108 1-113 56-183 (635)
97 4ay9_X Follicle-stimulating ho 98.7 9.2E-08 3.1E-12 74.3 8.7 91 7-99 89-194 (350)
98 1ziw_A TOLL-like receptor 3; i 98.7 1.6E-07 5.4E-12 78.6 10.6 133 2-138 30-181 (680)
99 1h6t_A Internalin B; cell adhe 98.6 7.6E-08 2.6E-12 73.0 7.7 128 2-139 73-211 (291)
100 1ziw_A TOLL-like receptor 3; i 98.6 1.3E-07 4.5E-12 79.2 9.5 114 1-119 53-186 (680)
101 2wfh_A SLIT homolog 2 protein 98.6 1.9E-07 6.4E-12 66.8 8.9 87 2-92 36-136 (193)
102 4b8c_D Glucose-repressible alc 98.6 4.8E-08 1.6E-12 83.1 6.7 101 10-114 213-327 (727)
103 4glp_A Monocyte differentiatio 98.6 6.3E-08 2.2E-12 73.9 6.7 73 2-74 96-181 (310)
104 2v9t_B SLIT homolog 2 protein 98.6 3.1E-07 1E-11 66.9 10.1 107 2-113 37-162 (220)
105 2ell_A Acidic leucine-rich nuc 98.6 1.5E-07 5.2E-12 65.3 7.9 109 1-114 28-158 (168)
106 2o6r_A Variable lymphocyte rec 98.6 8.1E-07 2.8E-11 62.2 10.8 72 2-79 12-92 (177)
107 2xot_A Amphoterin-induced prot 98.6 7.3E-07 2.5E-11 69.5 11.4 104 9-119 29-151 (361)
108 3o53_A Protein LRIM1, AGAP0063 98.6 1.6E-07 5.6E-12 71.8 7.4 132 2-141 104-250 (317)
109 2xot_A Amphoterin-induced prot 98.6 3.2E-07 1.1E-11 71.6 9.1 135 1-141 43-202 (361)
110 3oja_A Leucine-rich immune mol 98.5 1E-07 3.6E-12 77.4 6.2 130 2-139 39-180 (487)
111 4glp_A Monocyte differentiatio 98.5 4.3E-07 1.5E-11 69.2 9.1 131 2-139 150-305 (310)
112 2ifg_A High affinity nerve gro 98.5 3.3E-07 1.1E-11 70.7 8.4 88 2-92 13-113 (347)
113 1o6v_A Internalin A; bacterial 98.5 2.7E-07 9.4E-12 74.2 8.2 66 2-72 226-297 (466)
114 1w8a_A SLIT protein; signaling 98.5 4.8E-07 1.6E-11 64.5 8.6 91 1-93 33-137 (192)
115 3oja_A Leucine-rich immune mol 98.5 2.2E-07 7.7E-12 75.4 7.5 133 2-141 104-250 (487)
116 2r9u_A Variable lymphocyte rec 98.5 6.5E-07 2.2E-11 62.9 9.0 85 2-92 17-115 (174)
117 1a9n_A U2A', U2A'; complex (nu 98.5 1.5E-07 5.2E-12 66.0 5.5 117 17-139 15-151 (176)
118 1m9s_A Internalin B; cell inva 98.5 4.1E-07 1.4E-11 75.9 8.9 128 2-139 70-208 (605)
119 3o53_A Protein LRIM1, AGAP0063 98.5 9.2E-08 3.2E-12 73.3 4.4 128 2-139 39-180 (317)
120 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 4.9E-12 66.7 4.3 72 58-145 81-156 (176)
121 2o6r_A Variable lymphocyte rec 98.4 1.7E-06 6E-11 60.5 9.3 87 2-92 33-134 (177)
122 3g39_A Variable lymphocyte rec 98.4 2.3E-06 7.9E-11 59.8 9.5 84 2-91 14-111 (170)
123 1o6v_A Internalin A; bacterial 98.4 1.5E-06 5.2E-11 69.8 9.3 105 2-113 204-319 (466)
124 2je0_A Acidic leucine-rich nuc 98.4 5.3E-07 1.8E-11 61.3 5.6 96 19-119 15-128 (149)
125 1dce_A Protein (RAB geranylger 98.3 8.8E-07 3E-11 73.3 6.6 75 1-80 467-550 (567)
126 1a9n_A U2A', U2A'; complex (nu 98.3 8.2E-07 2.8E-11 62.2 5.2 106 2-114 24-151 (176)
127 2r9u_A Variable lymphocyte rec 98.3 2.9E-06 9.8E-11 59.6 7.7 74 1-78 37-120 (174)
128 3g39_A Variable lymphocyte rec 98.1 1E-05 3.5E-10 56.5 7.8 70 1-73 34-113 (170)
129 3goz_A Leucine-rich repeat-con 98.1 1.3E-06 4.5E-11 68.0 2.7 35 104-139 168-207 (362)
130 2p1m_B Transport inhibitor res 98.0 3.3E-07 1.1E-11 75.3 -1.7 16 128-144 289-304 (594)
131 1ds9_A Outer arm dynein; leuci 98.0 1E-07 3.5E-12 68.2 -5.3 99 10-113 37-150 (198)
132 3goz_A Leucine-rich repeat-con 97.9 2.7E-06 9.2E-11 66.2 2.1 35 103-138 196-235 (362)
133 2p1m_B Transport inhibitor res 97.9 2E-07 6.7E-12 76.6 -5.1 12 103-114 289-300 (594)
134 2ca6_A RAN GTPase-activating p 97.9 1.4E-06 4.8E-11 68.2 -0.5 14 18-31 91-104 (386)
135 3ogk_B Coronatine-insensitive 97.9 4.4E-06 1.5E-10 68.6 2.1 20 13-32 212-231 (592)
136 2ifg_A High affinity nerve gro 97.8 4.6E-05 1.6E-09 58.6 7.2 71 1-73 35-114 (347)
137 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.2E-10 55.9 3.9 54 43-96 90-153 (176)
138 1z7x_W Ribonuclease inhibitor; 97.7 1.1E-06 3.7E-11 70.1 -3.3 140 2-147 90-274 (461)
139 1z7x_W Ribonuclease inhibitor; 97.7 3.4E-06 1.2E-10 67.2 -0.7 110 2-114 33-181 (461)
140 3sb4_A Hypothetical leucine ri 97.6 0.00013 4.5E-09 55.8 6.7 22 10-31 112-134 (329)
141 3ogk_B Coronatine-insensitive 97.6 4E-05 1.4E-09 62.9 3.5 69 2-71 169-252 (592)
142 2ca6_A RAN GTPase-activating p 97.5 5.7E-06 1.9E-10 64.8 -2.8 140 2-144 127-319 (386)
143 1ds9_A Outer arm dynein; leuci 97.4 1.9E-06 6.4E-11 61.5 -6.2 88 1-94 52-152 (198)
144 3sb4_A Hypothetical leucine ri 96.6 0.0048 1.6E-07 47.0 6.4 91 43-144 231-326 (329)
145 3un9_A NLR family member X1; l 96.5 0.00021 7.3E-09 56.0 -1.8 141 2-149 77-259 (372)
146 4fdw_A Leucine rich hypothetic 96.1 0.014 4.9E-07 46.0 6.8 23 16-39 175-197 (401)
147 2ra8_A Uncharacterized protein 95.3 0.009 3.1E-07 46.6 2.7 46 102-150 278-328 (362)
148 4fdw_A Leucine rich hypothetic 95.2 0.045 1.6E-06 43.1 6.5 15 57-71 266-280 (401)
149 4h09_A Hypothetical leucine ri 94.7 0.11 3.8E-06 40.0 7.4 91 17-119 236-338 (379)
150 1io0_A Tropomodulin; LRR prote 94.7 0.012 4.3E-07 41.1 1.8 108 17-139 32-162 (185)
151 3rw6_A Nuclear RNA export fact 94.4 0.016 5.5E-07 43.4 1.9 38 19-71 168-205 (267)
152 4h09_A Hypothetical leucine ri 94.1 0.12 4.2E-06 39.8 6.5 12 59-70 260-271 (379)
153 4fs7_A Uncharacterized protein 93.9 0.08 2.7E-06 41.2 5.1 80 51-143 308-392 (394)
154 3rw6_A Nuclear RNA export fact 93.7 0.031 1.1E-06 41.8 2.3 60 2-79 175-237 (267)
155 4gt6_A Cell surface protein; l 92.7 0.23 7.9E-06 38.6 6.0 10 110-119 353-362 (394)
156 4gt6_A Cell surface protein; l 92.5 0.35 1.2E-05 37.5 6.8 54 58-119 284-339 (394)
157 3rfe_A Platelet glycoprotein I 92.3 0.25 8.5E-06 32.5 5.0 30 43-73 36-66 (130)
158 3un9_A NLR family member X1; l 90.8 0.036 1.2E-06 43.2 -0.5 88 2-93 131-250 (372)
159 2ra8_A Uncharacterized protein 90.4 0.099 3.4E-06 40.7 1.6 130 16-150 134-300 (362)
160 1io0_A Tropomodulin; LRR prote 87.1 0.12 4E-06 36.0 0.0 31 2-32 41-76 (185)
161 3rfe_A Platelet glycoprotein I 85.8 1.5 5.2E-05 28.6 5.0 40 49-91 18-64 (130)
162 4fs7_A Uncharacterized protein 83.4 1 3.4E-05 34.9 3.7 54 88-144 315-371 (394)
163 2lz0_A Uncharacterized protein 45.1 3.9 0.00013 25.4 -0.3 32 88-119 15-48 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=1.6e-13 Score=106.26 Aligned_cols=139 Identities=29% Similarity=0.398 Sum_probs=92.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce----------------EEecCCCCCccCCccCCCCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV----------------LIRCGCKRLKSLPSSICQLKPLQ 65 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~----------------L~l~~c~~l~~lp~~l~~l~~L~ 65 (167)
|++++| .++.+|..++.+++|++|++++|..++.+|..+. |++++| .++.+|..++++++|+
T Consensus 132 L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 132 LTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLK 209 (328)
T ss_dssp EEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCC
T ss_pred EECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCC
Confidence 556655 3446666666666666666666666666665431 666663 4456777777777788
Q ss_pred eeeecCCCCCccCCCCC----ccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 66 VLNLHGSSNLHRLPDEH----SIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 66 ~L~l~~c~~l~~lp~~~----~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
+|++++| .+..+|... +|+.|++++|...+.+|.. +++|+.|++++|..+..++.... ..+.++.|++++|
T Consensus 210 ~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n 287 (328)
T 4fcg_A 210 SLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGC 287 (328)
T ss_dssp EEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTC
T ss_pred EEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCC
Confidence 8888774 455555432 7777888888888887764 46788888988877766644432 2346888999999
Q ss_pred CCCCHH
Q 045006 139 FKLDRN 144 (167)
Q Consensus 139 ~~l~~~ 144 (167)
+.+...
T Consensus 288 ~~~~~i 293 (328)
T 4fcg_A 288 VNLSRL 293 (328)
T ss_dssp TTCCCC
T ss_pred Cchhhc
Confidence 877654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.3e-12 Score=101.11 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=107.3
Q ss_pred CEeecCCCCCCccCcccCC---------CCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCC
Q 045006 1 MLNLGGCEILKSLPAEIFL---------LELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPL 64 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~---------l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L 64 (167)
+|++++|..++.+|..++. +++|++|++++| .++.+|..++ |++++| .+..+|..++.+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCC
Confidence 4788998889999987664 899999999996 6668887665 999985 566788889999999
Q ss_pred CeeeecCCCCCccCCCCC----ccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeec
Q 045006 65 QVLNLHGSSNLHRLPDEH----SIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLS 136 (167)
Q Consensus 65 ~~L~l~~c~~l~~lp~~~----~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~ 136 (167)
++|++++|+..+.+|... +|+.|++++|..++.+|.. +++|+.|++++|..+..++...... +.++.+.+.
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~ 309 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVP 309 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECC
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCC
Confidence 999999998888887653 8899999999999999865 4688999999998888776554333 346666554
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.14 E-value=9.3e-10 Score=81.72 Aligned_cols=134 Identities=28% Similarity=0.243 Sum_probs=89.8
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCC-ccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 71 (167)
|+++++. ++.++ ..+..+++|++|++++| .+..++.. +. |+++++ .+..+| ..+..+++|++|++++
T Consensus 40 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 40 LDLQSTG-LATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEccCCC-cCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC
Confidence 5677664 44444 35778888999999885 45444432 22 888885 455555 4567889999999988
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
| .++.+|.. .+|+.|+++++ .++.+|.. +++|+.|+++++ +++.++.......+.++.+++++++--
T Consensus 117 N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 117 N-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred C-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5 66666653 27788888776 46666652 468889999886 466664322223356889999887643
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=1.3e-09 Score=81.81 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCCCCCCeeeecCCCCCccCCCC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCC
Q 045006 58 ICQLKPLQVLNLHGSSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYES 128 (167)
Q Consensus 58 l~~l~~L~~L~l~~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~ 128 (167)
++.+++|++|++++| .+..+|.. .+|+.|+++++. ++.++.. +++|+.|+++++ .++.++.......+
T Consensus 129 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205 (270)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred hCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence 344555555555553 33343332 155555555542 4444431 356777777765 45555332222334
Q ss_pred CccEEeecCCC
Q 045006 129 PLRHFDLSGDF 139 (167)
Q Consensus 129 ~l~~l~~~~C~ 139 (167)
.++.+++++++
T Consensus 206 ~L~~L~l~~N~ 216 (270)
T 2o6q_A 206 KLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEecCCC
Confidence 67788887765
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.11 E-value=2.4e-10 Score=84.18 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=74.4
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|. .+..+++|++|++++|..++.+|.. +. |++++|+.++.+|. .+.++++|++|++++
T Consensus 36 L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 36 LKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 566665 4666665 5667777888888776556666642 22 77776556666653 456677777777776
Q ss_pred CCCCccCCCC---CccC---ccccccccccccCCCC----ccccc-cccccCCccchhccccccccCCCccEEeecCCCC
Q 045006 72 SSNLHRLPDE---HSIP---NKNLNYSERLQSRPKL----PSNLE-WLLAHRCTALESGLIFSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 72 c~~l~~lp~~---~~L~---~l~l~~c~~l~~l~~~----~~~L~-~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~ 140 (167)
| .+..+|.. .+|+ .++++++..++.+|.. +++++ .++++++ +++.++...... ..++.++++++..
T Consensus 115 n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 115 T-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKNKY 191 (239)
T ss_dssp E-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTCTT
T ss_pred C-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCCCC
Confidence 4 34445531 1444 5556555445555432 33555 5555543 233332211111 2355555555543
Q ss_pred CC
Q 045006 141 LD 142 (167)
Q Consensus 141 l~ 142 (167)
++
T Consensus 192 l~ 193 (239)
T 2xwt_C 192 LT 193 (239)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 6
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.11 E-value=1.9e-10 Score=82.52 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=91.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|+++++ .++.+| .+..+++|++|++++| .+..++. .+. |++++|..-...|..++.+++|++|++++|..-
T Consensus 49 L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 49 ITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp EEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB
T ss_pred EeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC
Confidence 677876 577888 5888999999999997 5655542 122 899986554556778889999999999986433
Q ss_pred cc----CCCCCccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 76 HR----LPDEHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 76 ~~----lp~~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
.. +..-.+|+.|++++|..++.+|.. +++|+.|++++|. ++++. .. ...+.++.+++++.+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-~l-~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GI-EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-TG-GGCSSCCEEEECBC-
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-Hh-ccCCCCCEEEeeCcc
Confidence 22 222247888899888777777643 5688888888863 55553 11 123468888887654
No 7
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.11 E-value=2.9e-10 Score=83.72 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=91.3
Q ss_pred CEeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCccCCCCCCCC---eee
Q 045006 1 MLNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPSSICQLKPLQ---VLN 68 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~~l~~l~~L~---~L~ 68 (167)
+|++++|..++.+|+ .+..+++|++|++++|+.++.+|.. +. |++++| .++.+|. +..+++|+ +|+
T Consensus 59 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~ 136 (239)
T 2xwt_C 59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILE 136 (239)
T ss_dssp EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEE
T ss_pred EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEE
Confidence 367888755888876 5778899999999986678777743 22 888884 4666776 77777887 888
Q ss_pred ecCCCCCccCCCCC-----ccC-ccccccccccccCCCC---ccccccccccCCccchhccccccccC-CCccEEeecCC
Q 045006 69 LHGSSNLHRLPDEH-----SIP-NKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYE-SPLRHFDLSGD 138 (167)
Q Consensus 69 l~~c~~l~~lp~~~-----~L~-~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~-~~l~~l~~~~C 138 (167)
+++|..++.+|... +|+ .++++++. ++.+|.. ..+|+.|+++++..++.++....... ..++.++++++
T Consensus 137 l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp EESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 88864676666532 666 77776653 4566543 24788888887766766633222222 45777777764
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.10 E-value=9.5e-10 Score=82.95 Aligned_cols=109 Identities=28% Similarity=0.353 Sum_probs=60.0
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.+ |..+..+++|++|++++|..++.+ |..+. |++++|......|..+.++++|++|++++|
T Consensus 61 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 61 LWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 566665 35555 556777778888888876556655 33322 777775433333555666777777777764
Q ss_pred CCCccCCCC-----CccCccccccccccccCCCC----ccccccccccCC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRC 113 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c 113 (167)
.+..++.. .+|+.|+++++. ++.+|.. +++|+.|+++++
T Consensus 140 -~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 140 -ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred -cccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCC
Confidence 34444432 155555555542 3333321 234555554443
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.10 E-value=1.1e-09 Score=82.56 Aligned_cols=108 Identities=24% Similarity=0.266 Sum_probs=51.2
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccC-CccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSL-PSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|. .+..+++|++|++++| .+..+ |..+. |++++|..++.+ |..+..+++|++|++++
T Consensus 37 L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 37 IFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred EEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 455554 3444442 3555666666666664 33333 32222 666654434444 44555566666666665
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCC----CccccccccccCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRC 113 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c 113 (167)
| .+..++.. .+|+.|+++++. ++.++. .+++|+.|+++++
T Consensus 115 n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 115 C-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC
Confidence 4 23333211 255555555543 333332 1345555555543
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.08 E-value=2.2e-09 Score=80.70 Aligned_cols=133 Identities=28% Similarity=0.308 Sum_probs=83.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 72 (167)
|++++|. ++.++ .+..+++|++|++++| .++.+|.. +. |++++|. +..+|. .++.+++|++|++++|
T Consensus 68 L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 68 LALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp EECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC
Confidence 5666653 55554 4677777888888775 44455432 22 7888754 444443 4677888888888885
Q ss_pred CCCccCCCC-----CccCccccccccccccCCC----CccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
.+..++.. .+|+.|+++++. ++.++. .+++|+.|+++++ .++.++.......+.++.+++++++-.
T Consensus 144 -~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 144 -QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 55555542 267777887764 555554 2467888888876 466553332233456888998886543
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.07 E-value=9.7e-11 Score=89.94 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=33.7
Q ss_pred EeecCCCCCC--ccCcccCCCCCCCEEeccC-CCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILK--SLPAEIFLLELLKKLNFSG-CSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~--~lp~~~~~l~~L~~L~ls~-c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|+++++..-+ .+|..+..+++|++|++++ +...+.+|..+. |++++|...+.+|..+.++++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 4555554333 4555566666666666663 333334444333 45544333334444444444444444444
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.07 E-value=1.7e-10 Score=98.46 Aligned_cols=137 Identities=18% Similarity=0.063 Sum_probs=85.3
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++|...+.+|..++.+++|++|++++|...+.+|..++ |++++|...+.+|..++.+++|++|++++|..
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 45555543445666677777777777777655445565443 77777666667777777777777887777654
Q ss_pred CccCCCCC----ccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 75 LHRLPDEH----SIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 75 l~~lp~~~----~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
.+.+|... +|+.|++++|.....+|.. +++|+.|++++|.--..++... ...+.++.+++++|+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNL 549 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSSE
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCCc
Confidence 44555432 6777777777655566654 4567777777764222223222 223457777777764
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.05 E-value=7.5e-10 Score=94.46 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred ccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 12 SLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 12 ~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
.+|..++.+++|++|++++|...+.+|..+. |++++|...+.+|..++.+++|++|++++|
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 3344444444444444444333333333322 444444333344444444444444444443
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.03 E-value=2.3e-09 Score=85.77 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=12.4
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSG 30 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~ 30 (167)
|+++++. ++.++ ..+.++++|++|++++
T Consensus 69 L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~ 97 (440)
T 3zyj_A 69 LNLHENQ-IQIIKVNSFKHLRHLEILQLSR 97 (440)
T ss_dssp EECCSCC-CCEECTTTTSSCSSCCEEECCS
T ss_pred EEccCCc-CCeeCHHHhhCCCCCCEEECCC
Confidence 3444442 33332 3344455555555554
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.03 E-value=2.4e-09 Score=81.41 Aligned_cols=67 Identities=27% Similarity=0.253 Sum_probs=29.5
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCC-----ce-EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPES-----RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~-----~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|+++++. ++.+ |..+..+++|++|++++| .++.+|.. +. |++++ +.+..+|..+..+++|++|++++
T Consensus 36 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 36 LHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp EECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCS
T ss_pred EEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCC
Confidence 4455543 3333 234555555555555553 33333321 11 44444 23344444444444444444444
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.03 E-value=3e-10 Score=87.19 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=100.1
Q ss_pred CEeecC-CCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 1 MLNLGG-CEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 1 ~L~l~~-c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
+|++++ +...+.+|..++.+++|++|++++|...+.+|..+. |++++|...+.+|..++.+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 367775 544557898899999999999999755557887655 999997665688999999999999999996
Q ss_pred CCCccCCCCC-----ccCccccccccccccCCCCcc--ccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 73 SNLHRLPDEH-----SIPNKNLNYSERLQSRPKLPS--NLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 73 ~~l~~lp~~~-----~L~~l~l~~c~~l~~l~~~~~--~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
..-+.+|... .|+.++++++..-..+|..+. .|+.|+++++ .++..+.......+.++.|+++++.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSE
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCc
Confidence 5443666542 678888888765556665533 3888899886 3554422222233568888888874
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.02 E-value=5.3e-09 Score=78.39 Aligned_cols=131 Identities=29% Similarity=0.329 Sum_probs=85.9
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|. .+..+++|++|++++| .+..+|..+ . |+++++ .+..+|. .+..+++|++|++++
T Consensus 42 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 42 LDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp EECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS
T ss_pred EECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC
Confidence 566765 3666664 5777888888888884 566666543 1 888874 4555554 457788888888888
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
| .+..++.. .+|+.|+++++. ++.+|.. +++|+.|+++++ .++.++.........++.|+++++
T Consensus 119 n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 119 N-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC
Confidence 4 45555432 277788887764 5666642 468888888876 456553322222356888888877
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.01 E-value=1.6e-10 Score=96.66 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=30.5
Q ss_pred cCcccC--CCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCc--cCCccCCCC------CCCCeeeecC
Q 045006 13 LPAEIF--LLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLK--SLPSSICQL------KPLQVLNLHG 71 (167)
Q Consensus 13 lp~~~~--~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~--~lp~~l~~l------~~L~~L~l~~ 71 (167)
+|..++ ++++|++|++++|...+.+|..++ |++++|..+. .+|..++++ ++|++|++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 666555 666666666666555555555443 5555544222 344444333 4444444444
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=84.85 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=69.2
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|. .+..+++|++|++++| .++.++ ..+. |++++| .++.+|.. ++++++|++|++++
T Consensus 57 L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 57 LDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTT
T ss_pred EECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCC
Confidence 667765 4666665 5777888888888875 444443 3332 788774 55566654 67788888888887
Q ss_pred CCCCccCCC-C-----CccCccccccccccccCCC----CccccccccccCC
Q 045006 72 SSNLHRLPD-E-----HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRC 113 (167)
Q Consensus 72 c~~l~~lp~-~-----~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c 113 (167)
| .++.+|. . .+|+.++++++..++.++. .+++|+.|+++++
T Consensus 134 n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 134 N-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred C-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 4 5556655 1 2677777777765555542 1456666666654
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.00 E-value=3.7e-09 Score=84.79 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=33.5
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|+++++. ++.+ |..+.++++|++|++++| .+..++ ..+. |++++| .+..+|. .+..+++|++|++++
T Consensus 80 L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 80 LNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp EECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCS
T ss_pred EECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCC
Confidence 5566553 4444 344566666666666664 333333 2221 555553 3334433 245555555555555
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.00 E-value=2.9e-09 Score=85.38 Aligned_cols=132 Identities=20% Similarity=0.183 Sum_probs=67.5
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|++++| .++.++ ..+..+++|++|++++| .+..+|.. +. |+++++ .+..+|. .+.++++|++|++++
T Consensus 104 L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 104 LQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCC
T ss_pred EECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCC
Confidence 455554 344443 34556666666666663 34444432 21 666663 3344433 455666666666666
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
|+.++.++.. .+|+.|+++++ .++.+|.. +.+|+.|+++++ .++.+..........++.|+++++
T Consensus 181 ~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 181 LKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCC
Confidence 6666555543 15555666554 24445433 346666666654 344442221122235666666655
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=1.2e-09 Score=88.88 Aligned_cols=144 Identities=15% Similarity=-0.023 Sum_probs=91.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCc--cCCCCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLK--RLPESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~--~lp~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 71 (167)
|++++|...+.+|..++.+++|++|++++|...+ .+|..+. |++++|...+.+|.. +..+++|++|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 5666665444466677777788888887754332 3332222 788875444437664 66778888888888
Q ss_pred CCCCccCCCC--CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCCCHHHH
Q 045006 72 SSNLHRLPDE--HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLDRNEV 146 (167)
Q Consensus 72 c~~l~~lp~~--~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~~~~~ 146 (167)
|..-+.+|.. .+|+.|+++++ .++.+|.. +++|+.|+++++ +++.++.......+.++.+++++++---+...
T Consensus 409 N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 409 NILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp SCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 6543444433 36888888776 45677764 467888888887 57766443222335688999998876554443
Q ss_pred h
Q 045006 147 R 147 (167)
Q Consensus 147 ~ 147 (167)
.
T Consensus 487 ~ 487 (520)
T 2z7x_B 487 I 487 (520)
T ss_dssp H
T ss_pred h
Confidence 3
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.99 E-value=8.5e-10 Score=92.33 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=75.2
Q ss_pred EeecCCCCCCccCc--ccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCC-CCeeeecC
Q 045006 2 LNLGGCEILKSLPA--EIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKP-LQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~--~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~ 71 (167)
|++++| .++.+|. .++.+++|++|++++|...+.+| .+. |++++| .+..+|..+..+++ |++|++++
T Consensus 310 L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCS
T ss_pred EECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccC
Confidence 677776 4668888 88899999999999865544888 554 888884 45588888888888 99999988
Q ss_pred CCCCccCCCCC------ccCccccccccccccCCCCc----------cccccccccCC
Q 045006 72 SSNLHRLPDEH------SIPNKNLNYSERLQSRPKLP----------SNLEWLLAHRC 113 (167)
Q Consensus 72 c~~l~~lp~~~------~L~~l~l~~c~~l~~l~~~~----------~~L~~L~l~~c 113 (167)
| .+..+|... +|+.++++++.....+|..+ .+|+.|+++++
T Consensus 387 N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 387 N-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp S-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred C-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 5 455777542 46667776665444444322 25666666554
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.98 E-value=5.8e-09 Score=84.09 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=72.1
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce----EEecCCCCCccCCccCCCCCCCCeeeecCCCCCc
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLH 76 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 76 (167)
+|++++| .++.+| +++.+++|++|++++| .++.+|.... |++++| .+..+| .++++++|++|++++| .+.
T Consensus 135 ~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~ 208 (454)
T 1jl5_A 135 YLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLK 208 (454)
T ss_dssp EEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCS
T ss_pred EEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCC
Confidence 3677876 467788 4899999999999996 5666776544 999985 566687 5888999999999885 455
Q ss_pred cCCCCC-ccCccccccccccccCCCC--ccccccccccCC
Q 045006 77 RLPDEH-SIPNKNLNYSERLQSRPKL--PSNLEWLLAHRC 113 (167)
Q Consensus 77 ~lp~~~-~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c 113 (167)
.+|... +|+.++++++. ++.+|.. +++|+.|+++++
T Consensus 209 ~l~~~~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 209 KLPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp SCCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred cCCCCcCcccEEECcCCc-CCcccccCCCCCCCEEECCCC
Confidence 555433 56666666652 3445432 334555555543
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=9.4e-09 Score=76.24 Aligned_cols=131 Identities=21% Similarity=0.154 Sum_probs=92.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
++++++ .++.+|..+. ++++.|++++|. +..++. .+. |+++++..-+..|..+..+++|++|++++|
T Consensus 19 l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 19 VDCQGK-SLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp EECTTC-CCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred EecCCC-CccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-
Confidence 456654 6888997665 689999999964 544443 333 999996444444556889999999999995
Q ss_pred CCccCCCC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 74 NLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 74 ~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
.+..++.. .+|+.|+++++ .++.+|.. +++|+.|+++++ +++.++.........++.|+++++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc
Confidence 56666643 27888889886 46677643 578999999987 5776644222233568889888873
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.98 E-value=1.1e-09 Score=90.46 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=64.2
Q ss_pred cCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCc-cCCccCCCCCCCCeeeecCCCCCccCCCC----Ccc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLK-SLPSSICQLKPLQVLNLHGSSNLHRLPDE----HSI 84 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~lp~~----~~L 84 (167)
+..+++|++|++++|...+..|..+. |++++|...+ .+|..++.+++|++|++++|...+..|.. .+|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 44455555555555433333333322 5666543333 24556666666666666665322222221 256
Q ss_pred CccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 85 PNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 85 ~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
+.|+++++......|.. +++|+.|+++++. ++.++.........++.+++++++-.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 66666666433333332 3467777777763 66554443333335777888776544
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=1.5e-08 Score=74.34 Aligned_cols=130 Identities=23% Similarity=0.198 Sum_probs=87.7
Q ss_pred eecCCCCCCccCcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCCC
Q 045006 3 NLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSS 73 (167)
Q Consensus 3 ~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 73 (167)
+.++ ..++.+|..+. ++|++|++++|. +..+ |..+. |+++++ .++.+|. .+..+++|++|++++|
T Consensus 25 ~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N- 98 (229)
T 3e6j_A 25 DCRS-KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN- 98 (229)
T ss_dssp ECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EccC-CCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-
Confidence 4444 35778887554 789999999854 4444 44443 888884 5677765 4578899999999885
Q ss_pred CCccCCCC-----CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCC
Q 045006 74 NLHRLPDE-----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 74 ~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~ 140 (167)
.+..++.. .+|+.|+++++ .++.+|.. +++|+.|+++++ +++.++.........++.+++.+.+-
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 66666543 27778888775 46677754 467888888876 56666433223335688888888763
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.96 E-value=9e-09 Score=77.28 Aligned_cols=131 Identities=27% Similarity=0.281 Sum_probs=93.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCc-cCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~ 74 (167)
|+++++ .++.++. +..+++|++|++++|. +..++. .+. |++++| .+..+|. .++++++|++|++++| .
T Consensus 46 L~l~~~-~i~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~ 120 (272)
T 3rfs_A 46 IIANNS-DIKSVQG-IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-Q 120 (272)
T ss_dssp EECTTS-CCCCCTT-GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred eeeCCC-Ccccccc-cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-c
Confidence 566665 4666765 8889999999999964 555542 122 999996 4555554 5789999999999996 5
Q ss_pred CccCCCC-----CccCccccccccccccCCC----CccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 75 LHRLPDE-----HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 75 l~~lp~~-----~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
+..++.. .+|+.|+++++ .++.++. .+++|+.|+++++ +++.++.........++.|++++|.
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc
Confidence 6666543 27888999887 4666664 2578999999987 4666643322334578899988874
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.95 E-value=1e-08 Score=77.92 Aligned_cols=132 Identities=30% Similarity=0.259 Sum_probs=97.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCC-ccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 73 (167)
|+++++ .++.+|.. +.+++|++|++++| .++.+|..+. |+++++ .++.+| ..+..+++|++|++++|
T Consensus 60 L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N- 134 (290)
T 1p9a_G 60 LNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN- 134 (290)
T ss_dssp EECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-
T ss_pred EECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-
Confidence 677876 57777764 78899999999994 6778887554 999984 566665 56889999999999995
Q ss_pred CCccCCCC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 74 NLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 74 ~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
.++.+|.. .+|+.|+++++ .++.+|.. +++|+.|+++++ .++.++...... ..++.+.+.+.+--
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSEEECCSCCBC
T ss_pred CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc-ccCCeEEeCCCCcc
Confidence 67777654 27888888776 46777753 568999999886 467664433222 35888998876643
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.93 E-value=6.2e-09 Score=83.22 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=77.0
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|++++| .++.++ ..+..+++|++|++++| .++.+|.. +. |+++++ .+..+|. .+.++++|++|++++
T Consensus 93 L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 93 LQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp EECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCC
T ss_pred EECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCC
Confidence 566665 355554 34666777777777774 55555542 22 777764 3444443 566677777777777
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
|+.++.++.. .+|+.|+++++ .++.+|.. +.+|+.|+++++ .++.+....-.....|+.|+++++
T Consensus 170 ~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 170 LKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC
Confidence 6666665543 26666667665 35566643 456777777776 455552222222345677776665
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=2.1e-09 Score=88.84 Aligned_cols=136 Identities=17% Similarity=0.047 Sum_probs=82.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
|++++|. ++.+|..+..+++|++|++++|...+..| ..+. |++++|...+..|..++.+++|++|++++|.
T Consensus 381 L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 4555553 55566666677777777777754333333 1222 7777766555667777778888888888764
Q ss_pred CCcc-CCCC----CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 74 NLHR-LPDE----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 74 ~l~~-lp~~----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
..+. +|.. .+|+.|++++|...+..|.. +++|+.|+++++ +++.+.+......+.++.+++++|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence 3331 3433 37777788777543333432 467888888887 4555522222233468888888885
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.92 E-value=1.3e-08 Score=82.08 Aligned_cols=105 Identities=28% Similarity=0.390 Sum_probs=76.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC---Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE---SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR 77 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~---~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 77 (167)
|++++| .++.+| .++.+++|++|++++| .+..+|. .+. +++++| .+..+|. ++.+++|++|++++| .+..
T Consensus 178 L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~ 251 (454)
T 1jl5_A 178 IAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN-LLKT 251 (454)
T ss_dssp EECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSS
T ss_pred EECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-cCCc
Confidence 677776 466677 4888999999999986 4555554 344 999986 5668884 889999999999985 5666
Q ss_pred CCCCC-ccCccccccccccccCCCCccccccccccCC
Q 045006 78 LPDEH-SIPNKNLNYSERLQSRPKLPSNLEWLLAHRC 113 (167)
Q Consensus 78 lp~~~-~L~~l~l~~c~~l~~l~~~~~~L~~L~l~~c 113 (167)
+|... +|+.++++++. ++.+|..+++++.|+++++
T Consensus 252 l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred ccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 66543 77778777654 5567766677777777665
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=7.3e-10 Score=95.88 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=38.1
Q ss_pred cCCc--cCCCCCCCCeeeecCCCCCccCCCC---CccCccccccccccccCCCCc---cc-cccccccCCccchhccccc
Q 045006 53 SLPS--SICQLKPLQVLNLHGSSNLHRLPDE---HSIPNKNLNYSERLQSRPKLP---SN-LEWLLAHRCTALESGLIFS 123 (167)
Q Consensus 53 ~lp~--~l~~l~~L~~L~l~~c~~l~~lp~~---~~L~~l~l~~c~~l~~l~~~~---~~-L~~L~l~~c~~L~~~~~~~ 123 (167)
.+|. .++++++|+.|++++| .+..+|.- .+|+.|+++++. +..+|..+ ++ |+.|+++++. ++.++...
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCC
T ss_pred ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhh
Confidence 4444 4555555555555553 23344411 144445554443 33455332 23 5666666553 44443222
Q ss_pred ccc-CCCccEEeecCCC
Q 045006 124 ISY-ESPLRHFDLSGDF 139 (167)
Q Consensus 124 ~~~-~~~l~~l~~~~C~ 139 (167)
... ...++.|++++|.
T Consensus 639 ~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTCSSCEEEEECCSSC
T ss_pred hccccCCCCEEECcCCc
Confidence 111 1236667776664
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=83.60 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=89.5
Q ss_pred CEeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc--cCCCCCCCCeeee
Q 045006 1 MLNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS--SICQLKPLQVLNL 69 (167)
Q Consensus 1 ~L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~--~l~~l~~L~~L~l 69 (167)
+|++++| .++.++ ..+..+++|++|++++| .++.+|.. +. |+++++ .++.+|. .+..+++|++|++
T Consensus 80 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 80 ALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEE
T ss_pred EEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEEC
Confidence 3678877 466664 56889999999999995 66667653 22 999984 6677876 6888999999999
Q ss_pred cCCCCCccCCCC-----CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 70 HGSSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 70 ~~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
++|..++.++.. .+|+.++++++..-...|.. +++|+.|+++++. ++.++.......+.++.++++++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC
Confidence 998666666432 27777888776543333433 4577788887764 44442222222234666666665
No 35
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=5.3e-09 Score=81.33 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=52.3
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCC-ccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|+ .+..+++|++|++++|...+.+|... . +...+++.+..+| ..+..+++|++|++++
T Consensus 35 L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 35 LRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 788876 6889986 47889999999999987667776532 1 3333345666664 4567788888888876
Q ss_pred CCCCccCC
Q 045006 72 SSNLHRLP 79 (167)
Q Consensus 72 c~~l~~lp 79 (167)
| .+..+|
T Consensus 114 n-~l~~~~ 120 (350)
T 4ay9_X 114 T-GIKHLP 120 (350)
T ss_dssp E-CCSSCC
T ss_pred c-ccccCC
Confidence 4 343333
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=2.7e-08 Score=72.60 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=89.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
++.+++ .++.+|..+. +++++|+++++ .++.+|. .+. |+++++..-...|..+.++++|++|++++|
T Consensus 16 v~c~~~-~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 16 VDCRGK-GLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp EECTTS-CCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred EEcCCC-CcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 345543 5788887554 68999999984 5666664 222 899985444444778889999999999984
Q ss_pred CCccCCCCC-----ccCccccccccccccCC-CC---ccccccccccCCccchhccccccccCCCccEEeecCCCC
Q 045006 74 NLHRLPDEH-----SIPNKNLNYSERLQSRP-KL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 74 ~l~~lp~~~-----~L~~l~l~~c~~l~~l~-~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~ 140 (167)
.+..+|... +|+.|+++++. ++.++ .. +++|+.|+++++ +++.+..........++.+++++.+-
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 677777642 77888887764 55553 22 468888888876 46666332222234678888887654
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.91 E-value=1.3e-08 Score=74.73 Aligned_cols=108 Identities=26% Similarity=0.248 Sum_probs=81.8
Q ss_pred CEeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 70 (167)
+|++++|. +..+ |..+..+++|++|++++| .++.+|... . |+++++ .+..+|. .+..+++|++|+++
T Consensus 44 ~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 44 ILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEecc
Confidence 37888875 5555 667889999999999995 567777543 2 999995 6667765 46889999999999
Q ss_pred CCCCCccCCCCC----ccCccccccccccccCCCC----ccccccccccCC
Q 045006 71 GSSNLHRLPDEH----SIPNKNLNYSERLQSRPKL----PSNLEWLLAHRC 113 (167)
Q Consensus 71 ~c~~l~~lp~~~----~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c 113 (167)
+| .+..+|... +|+.|+++++ .++.++.. +++|+.|++.+.
T Consensus 121 ~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 121 CN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 94 677888663 7888888875 56677642 467888888753
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.91 E-value=5.8e-09 Score=79.30 Aligned_cols=123 Identities=19% Similarity=0.129 Sum_probs=65.0
Q ss_pred cCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCc-cCCccCCCCCCCCeeeecCCCCCccC-CCC----Cc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLK-SLPSSICQLKPLQVLNLHGSSNLHRL-PDE----HS 83 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~----~~ 83 (167)
+..+++|++|++++|...+..|..+. |++++|...+ .+|..+..+++|++|++++| .+..+ |.. .+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCC
Confidence 44455555555555432222222221 6666643322 35666666777777777764 33333 222 25
Q ss_pred cCccccccccccccCCC----CccccccccccCCccchhc-cccccccCCCccEEeecCCCCCC
Q 045006 84 IPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLD 142 (167)
Q Consensus 84 L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~ 142 (167)
|+.|+++++. ++.++. .+++|+.|+++++ .++.. +.........++.+++++++---
T Consensus 201 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCEEECCCCc-cCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 6666676654 444443 1457777777776 34444 32333333468888888876443
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.91 E-value=2.7e-09 Score=81.17 Aligned_cols=134 Identities=23% Similarity=0.240 Sum_probs=76.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC--Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE--SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~--~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++| .++.+|..+..+++|++|++++| .+..++. .+. |++++|......|..+..+++|++|++++|
T Consensus 83 L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 83 LDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred EECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 455554 34455655666667777777664 3333332 111 777775444445556677777777777775
Q ss_pred CCCc-cCCCC----CccCccccccccccccC-CCC---ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 73 SNLH-RLPDE----HSIPNKNLNYSERLQSR-PKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 73 ~~l~-~lp~~----~~L~~l~l~~c~~l~~l-~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
.... .+|.. .+|+.|+++++. ++.+ |.. +++|+.|+++++. ++.+........+.++.++++++.
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 3222 23332 267777777764 3333 332 4577788887763 555532222233568888888774
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.90 E-value=1.3e-08 Score=81.98 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=31.4
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+ |..+..+++|++|++++| .+..+ |..+. |+++++ .+..+|. .+.++++|++|++++
T Consensus 37 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 37 LDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTT
T ss_pred EECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCC
Confidence 455554 34444 234555566666666654 23322 32222 555552 3344443 234455555555554
Q ss_pred C
Q 045006 72 S 72 (167)
Q Consensus 72 c 72 (167)
|
T Consensus 114 n 114 (477)
T 2id5_A 114 N 114 (477)
T ss_dssp S
T ss_pred C
Confidence 3
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=1.6e-08 Score=84.56 Aligned_cols=102 Identities=27% Similarity=0.300 Sum_probs=63.3
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce----EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR 77 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 77 (167)
|+++++ .++.+|..+. ++|++|++++| .++.+|..+. |++++| .++.+|. .+++|++|++++| .+..
T Consensus 45 L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~ 115 (622)
T 3g06_A 45 LNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPALPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTH 115 (622)
T ss_dssp EECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCCCCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCC
T ss_pred EEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCCcCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCC
Confidence 566665 5777777554 67888888875 5666665333 777774 4666775 5567777777764 4555
Q ss_pred CCCCC-ccCccccccccccccCCCCccccccccccCC
Q 045006 78 LPDEH-SIPNKNLNYSERLQSRPKLPSNLEWLLAHRC 113 (167)
Q Consensus 78 lp~~~-~L~~l~l~~c~~l~~l~~~~~~L~~L~l~~c 113 (167)
+|... +|+.|+++++ .++.+|..+++|++|+++++
T Consensus 116 l~~~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 116 LPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN 151 (622)
T ss_dssp CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CCCCCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCC
Confidence 55432 5566666554 25555555556666655554
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=6.7e-09 Score=89.91 Aligned_cols=90 Identities=16% Similarity=0.272 Sum_probs=63.5
Q ss_pred EeecCCCCCCccCc--ccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCC-CCeeeecC
Q 045006 2 LNLGGCEILKSLPA--EIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKP-LQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~--~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~ 71 (167)
|++++|. +..+|. .++++++|++|++++|. +..+| .++ |++++| .+..+|..+..+++ |+.|++++
T Consensus 553 L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 553 FYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCS
T ss_pred EEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcC
Confidence 6777764 558888 78888888888888854 55777 444 888885 45588888888888 88888888
Q ss_pred CCCCccCCCCC------ccCccccccccccc
Q 045006 72 SSNLHRLPDEH------SIPNKNLNYSERLQ 96 (167)
Q Consensus 72 c~~l~~lp~~~------~L~~l~l~~c~~l~ 96 (167)
| .+..+|... +|+.|+++++....
T Consensus 629 N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 629 N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp S-CCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred C-CCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 5 455776542 26666666665433
No 43
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.88 E-value=6.9e-11 Score=90.94 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=5.4
Q ss_pred CccEEeecCC
Q 045006 129 PLRHFDLSGD 138 (167)
Q Consensus 129 ~l~~l~~~~C 138 (167)
.++.|++++|
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 4555555555
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=2.3e-08 Score=83.68 Aligned_cols=61 Identities=34% Similarity=0.350 Sum_probs=33.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce----EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV----LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|++++| .++.+|. .+++|++|++++| .++.+|..+. |++++| .+..+|. .+++|+.|++++
T Consensus 66 L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 66 LVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp EEECSC-CCSCCCC---CCTTCCEEEECSC-CCSCCCCCCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred EEecCC-CCCCCCC---cCCCCCEEEcCCC-cCCcCCCCCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 566665 4666665 4566777777774 4555655332 666653 4444443 233444444444
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=3.7e-09 Score=75.72 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=79.8
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
+|++++| .++.++ .+..+++|++|++++|......|..+. |++++|......|..++.+++|++|++++|.
T Consensus 70 ~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 70 DLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 3788887 566666 588999999999999654444555444 9999976555677888999999999999986
Q ss_pred CCccCCCC---CccCccccccccccccCCCC--ccccccccccCC
Q 045006 74 NLHRLPDE---HSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRC 113 (167)
Q Consensus 74 ~l~~lp~~---~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c 113 (167)
.++.+|.- .+|+.|++++|. ++.++.. +++|+.|++++.
T Consensus 148 ~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 148 AITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred CccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCc
Confidence 57777632 278888888764 5555532 456777766653
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.87 E-value=3.1e-09 Score=87.01 Aligned_cols=139 Identities=19% Similarity=0.091 Sum_probs=84.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-Cc------e-EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SR------V-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~------~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
|++++| .+..+|..+..+++|++|++++|...+..|. .+ . |++++|......|..+..+++|++|++++|.
T Consensus 378 L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 378 LDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp EECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc
Confidence 445544 2444555566667777777776533222221 11 1 7787766555667777788888888888864
Q ss_pred CC-ccCCCC----CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCCC
Q 045006 74 NL-HRLPDE----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLD 142 (167)
Q Consensus 74 ~l-~~lp~~----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~ 142 (167)
.. +.+|.. .+|+.|++++|......|.. +++|+.|+++++ +++.++.......+.++.+++++++--.
T Consensus 457 l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 33 245533 27777888777543333433 467888888887 5666643322334568889998876443
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.87 E-value=1.7e-08 Score=83.46 Aligned_cols=70 Identities=27% Similarity=0.243 Sum_probs=30.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 72 (167)
|++++| .++.+|.++..+++|++|++++|...+..|..+. |++++|.....+|.. ++.+++|++|++++|
T Consensus 283 L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 283 LDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 344443 3444555455555555555555322221121211 455544333333332 445555555555553
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.87 E-value=7.5e-09 Score=85.11 Aligned_cols=141 Identities=17% Similarity=-0.035 Sum_probs=75.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCC---CCce-------EEecCCCCCccCCcc-CCCCCCCCeeeec
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLP---ESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLH 70 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp---~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~ 70 (167)
|++++|...+.+|..++.+++|++|++++| .++.+| ..+. |++++|...+.+|.. +..+++|++|+++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 444444323334555556666666666663 333332 1111 666664333335543 4556666666666
Q ss_pred CCCCCccCCCC--CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCCCHHH
Q 045006 71 GSSNLHRLPDE--HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLDRNE 145 (167)
Q Consensus 71 ~c~~l~~lp~~--~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~~~~ 145 (167)
+|..-+.+|.. .+|+.|+++++ .++.+|.. +++|+.|+++++ +++.++.......+.++.+++++++---+..
T Consensus 437 ~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 437 SNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 65433333333 25677777665 45666653 357777777775 4665543322233467778888877554443
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.87 E-value=3.3e-09 Score=86.17 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=77.7
Q ss_pred CCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCc--cCCccCCCCCCCCeeeecCCCCCccCCCC-----Cc
Q 045006 18 FLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLK--SLPSSICQLKPLQVLNLHGSSNLHRLPDE-----HS 83 (167)
Q Consensus 18 ~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~ 83 (167)
..+++|++|++++|...+.+|..+. |++++|...+ .+|..++.+++|++|++++|.....+|.. .+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 5667777888877654444565544 7777754332 45566777888888888875433325543 26
Q ss_pred cCccccccccccccCCCCc-cccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 84 IPNKNLNYSERLQSRPKLP-SNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 84 L~~l~l~~c~~l~~l~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
|+.|+++++.....+|..+ ++|+.|+++++ +++.++.... ..+.++.+++++|.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVASNQ 455 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhh-cCCCCCEEECCCCc
Confidence 7777887776545555443 68888888887 5666644333 34568889988873
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.86 E-value=1.1e-08 Score=84.07 Aligned_cols=133 Identities=16% Similarity=0.031 Sum_probs=95.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccC---CccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSL---PSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~l---p~~l~~l~~L~~L~l~~ 71 (167)
|++++|. +..++. ...+++|++|++++|...+.+|..+. |++++| .++.+ |..++++++|++|++++
T Consensus 336 L~l~~n~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 336 LSISDTP-FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEccCCC-cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC
Confidence 5677764 433332 26789999999999766555676554 999985 55544 45788999999999999
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCCc-cccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKLP-SNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
|..-..+|.. .+|+.++++++..-..+|..+ ++|+.|+++++ +++.++.... ..+.++.++++++.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVASNQ 484 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEEECCSSC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEEECCCCC
Confidence 6543337654 388889999887556666555 69999999998 6777754443 34568889988864
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.86 E-value=2.5e-08 Score=76.61 Aligned_cols=57 Identities=26% Similarity=0.302 Sum_probs=23.8
Q ss_pred CcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCC-ccCCCCCCCCeeeecCC
Q 045006 14 PAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLP-SSICQLKPLQVLNLHGS 72 (167)
Q Consensus 14 p~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 72 (167)
|..+..+++|++|++++| .++.+|..+. |+++++. +..++ ..+.++++|++|++++|
T Consensus 93 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCC-cCCccChhhcccccEEECCCCc-ccccCHhHhcCCccccEEECCCC
Confidence 334444444555555442 3334443322 4444422 22222 22444555555555543
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.86 E-value=7.6e-09 Score=83.47 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=35.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++| .++.+| ++.+++|+.|++++| .++.++- .+. |++++| .+..+| ++.+++|++|++++|
T Consensus 175 L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 175 LDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS
T ss_pred EECCCC-ccceec--cccCCCCCEEECcCC-cCCeeccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC
Confidence 566665 455565 566677777777764 3433321 111 666663 444455 556666666666664
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.86 E-value=6.4e-09 Score=84.89 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=69.4
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|++++|. ++.+ |..+..+++|++|++++| .+..++ ..+. |++++| .+..+|. .++++++|++|++++
T Consensus 31 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 31 LDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp EECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTT
T ss_pred EECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCC
Confidence 6777764 5555 456788888888888886 444444 3333 888885 4444444 478888888888888
Q ss_pred CCCCccC--CCC----CccCccccccccccccCCC----CccccccccccCC
Q 045006 72 SSNLHRL--PDE----HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRC 113 (167)
Q Consensus 72 c~~l~~l--p~~----~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c 113 (167)
| .+..+ |.. .+|+.|+++++..++.+|. .+++|+.|+++++
T Consensus 108 n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 108 N-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred C-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 5 34432 222 2777778877766666653 1456677766654
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.85 E-value=1.3e-08 Score=83.99 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=71.1
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
|+++++ .++.+ |..++.+++|++|++++|...+..|..+. |++++|......|..++++++|++|++++|
T Consensus 38 L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 115 (606)
T 3t6q_A 38 LEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT- 115 (606)
T ss_dssp EECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-
T ss_pred EEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-
Confidence 677776 45666 55788888899999888654444455444 888886555556778888888888888885
Q ss_pred CCccCC-CC----CccCccccccccccccC--CCC--ccccccccccCC
Q 045006 74 NLHRLP-DE----HSIPNKNLNYSERLQSR--PKL--PSNLEWLLAHRC 113 (167)
Q Consensus 74 ~l~~lp-~~----~~L~~l~l~~c~~l~~l--~~~--~~~L~~L~l~~c 113 (167)
.+..++ .. .+|+.|+++++. +..+ |.. +++|+.|+++++
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSS
T ss_pred CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccC
Confidence 344431 11 267777777765 3333 332 456777777654
No 55
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.84 E-value=1.5e-10 Score=89.06 Aligned_cols=42 Identities=19% Similarity=0.118 Sum_probs=21.8
Q ss_pred ccccccccccCCccchhc-cccccccCCCccEEeecCCCCCCHH
Q 045006 102 PSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLDRN 144 (167)
Q Consensus 102 ~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~~~ 144 (167)
+++|+.|++++|..+++. +.... ..+.++.|++++|..+...
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGG
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHH
Confidence 345666666666544433 22221 2245667777777655544
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.83 E-value=3.9e-08 Score=70.76 Aligned_cols=124 Identities=27% Similarity=0.255 Sum_probs=73.2
Q ss_pred CCCccCcccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCC
Q 045006 9 ILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLP 79 (167)
Q Consensus 9 ~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp 79 (167)
.++.+|..+ .++|++|++++| .++.+|.. +. |+++++ .++.+|. .+..+++|++|++++| .+..++
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~ 92 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLP 92 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccC
Confidence 456666543 357778888774 45555543 22 777774 4555554 3467778888888774 455555
Q ss_pred CC-----CccCccccccccccccCCCC----ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 80 DE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 80 ~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
.. .+|+.|+++++. ++.++.. +++|+.|+++++ .++.++.........++.+++++++
T Consensus 93 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 43 266777776653 5555432 457777777775 4555533222223457777777754
No 57
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=5.1e-09 Score=72.95 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCCCEEeccCCCCC-ccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc-CCCC----CccCc
Q 045006 20 LELLKKLNFSGCSKL-KRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR-LPDE----HSIPN 86 (167)
Q Consensus 20 l~~L~~L~ls~c~~l-~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~----~~L~~ 86 (167)
.++|++|++++|... +.+|..+. |++++|. +..+ ..+..+++|++|++++|. +.. +|.. .+|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence 355666666664322 25554432 6666643 4444 456666667777776643 333 3322 15666
Q ss_pred cccccccccccCCC-----CccccccccccCCccchhccc---cccccCCCccEEeecCCCC
Q 045006 87 KNLNYSERLQSRPK-----LPSNLEWLLAHRCTALESGLI---FSISYESPLRHFDLSGDFK 140 (167)
Q Consensus 87 l~l~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~~---~~~~~~~~l~~l~~~~C~~ 140 (167)
|+++++ .++.+|. .+++|+.|+++++ .++.++. ......+.++.+++.+|..
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666655 3444431 2456777777766 3444432 1122234577777777653
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.83 E-value=3.5e-08 Score=73.92 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=69.5
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCC-ccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 71 (167)
|++++| .++.++. .+..+++|++|++++|. ++.++ ..+. |+++++. +..++ ..++.+++|++|++++
T Consensus 57 L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 57 LDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp EECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS
T ss_pred EECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcC
Confidence 567766 4555554 56777778888877753 33333 2222 6666643 33333 2455666666666666
Q ss_pred CCCCcc--CCCC----CccCcccccccc---------------------------ccccCCCC---ccccccccccCCcc
Q 045006 72 SSNLHR--LPDE----HSIPNKNLNYSE---------------------------RLQSRPKL---PSNLEWLLAHRCTA 115 (167)
Q Consensus 72 c~~l~~--lp~~----~~L~~l~l~~c~---------------------------~l~~l~~~---~~~L~~L~l~~c~~ 115 (167)
| .+.. +|.. .+|+.|+++++. .++.++.. ..+|+.|+++++.
T Consensus 134 n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~- 211 (276)
T 2z62_A 134 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ- 211 (276)
T ss_dssp S-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-
T ss_pred C-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-
Confidence 4 3332 2322 144444444432 12222221 2267788888764
Q ss_pred chhccccccccCCCccEEeecCC
Q 045006 116 LESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 116 L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
++.++.........++.+++++.
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCHhHhcccccccEEEccCC
Confidence 66664333233456888998843
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.81 E-value=2.9e-08 Score=74.39 Aligned_cols=108 Identities=25% Similarity=0.287 Sum_probs=70.1
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.++. .+..+++|++|++++| .+..++. .+. |+++++......|..+.++++|++|++++|
T Consensus 33 L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 33 LDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 677776 4666665 6778888888888886 4555543 222 888885443444467788888888888885
Q ss_pred CCCccCCCC-----CccCcccccccccccc--CCCC---ccccccccccCC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQS--RPKL---PSNLEWLLAHRC 113 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~~--l~~~---~~~L~~L~l~~c 113 (167)
.+..++.. .+|+.|+++++. ++. +|.. +++|+.|+++++
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 111 -NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred -CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 44444332 277777787764 333 4443 357777777765
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.81 E-value=3.4e-08 Score=79.44 Aligned_cols=137 Identities=21% Similarity=0.171 Sum_probs=67.6
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++| .++.+ |..+.++++|++|++++| .++.+|... . |++++|......|..+..+++|++|++++|
T Consensus 61 L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 61 LELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred EECCCC-ccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 455554 23333 445566666666666663 344454321 1 666664443344455566666666666653
Q ss_pred CCCccCCC-----CCccCccccccccccccCCC----CccccccccccCCccchhccccccccCCCccEEeecCCCCCCH
Q 045006 73 SNLHRLPD-----EHSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLDR 143 (167)
Q Consensus 73 ~~l~~lp~-----~~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~~ 143 (167)
.+..++. -.+|+.|+++++. ++.++. .+++|+.|+++++ .++.+..........++.+++++|..+..
T Consensus 139 -~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 139 -DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp -TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred -ccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccc
Confidence 2332221 1255555555542 344432 2345566666554 23333222222234577778877765543
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.81 E-value=2.4e-08 Score=76.35 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=33.8
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++| .++.+| .+..+++|++|++++| .+..+|. +. |++++| .++.+| .+..+++|++|++++|
T Consensus 46 L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 46 LSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp EECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS
T ss_pred EEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC
Confidence 455554 355555 3566666666666664 3444432 21 555553 244443 3555555555555553
No 62
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.80 E-value=4.4e-08 Score=81.19 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=15.6
Q ss_pred ccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 106 EWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 106 ~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
+.|+++++ .++.++..... .+.++.+++++++
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILS-LDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGG-SCTTEEEECCSSS
T ss_pred eEEecCCC-cceecCHHHhc-CCCCCEEEeeCCc
Confidence 55555543 34444332222 3456667777664
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.80 E-value=2.8e-08 Score=75.99 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=81.6
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC-----ce-EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-----RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-----~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
+|++++| .++.++. +..+++|++|++++| .++.+|.. +. |++++| .+..+|. +..+++|++|++++| .
T Consensus 67 ~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~ 140 (308)
T 1h6u_A 67 GLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-Q 140 (308)
T ss_dssp EEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred EEEccCC-cCCCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-c
Confidence 3678877 5777877 888899999999986 46665521 22 888885 4566664 788888888888885 4
Q ss_pred CccCCC---CCccCccccccccccccCCC--CccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 75 LHRLPD---EHSIPNKNLNYSERLQSRPK--LPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 75 l~~lp~---~~~L~~l~l~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
+..++. -.+|+.|+++++. ++.++. .+++|+.|+++++ .++.+.. ....+.++.|++++|.
T Consensus 141 l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 141 ITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSC
T ss_pred cCcCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCc
Confidence 444432 1267777777663 444443 2456777777665 3444422 1122346666666653
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.80 E-value=8.1e-09 Score=84.29 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=75.3
Q ss_pred CEeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCc-cCCccCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLK-SLPSSICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~-~lp~~l~~l~~L~~L~l~ 70 (167)
+|++++|. ++.++ ..++.+++|++|++++| .+..+|.. ++ |++++|.... .+|..++++++|++|+++
T Consensus 54 ~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 54 VLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred EEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 47788874 55555 57889999999999996 45555543 32 9999864333 456788999999999999
Q ss_pred CCCCCccCCCC-----CccCccccccccccccCCCC---ccccccccccC
Q 045006 71 GSSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHR 112 (167)
Q Consensus 71 ~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~ 112 (167)
+|..++.+|.. .+|+.|+++++..-..+|.. +++++.|++++
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 98767776643 26777778776644444443 33555555544
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.79 E-value=5.9e-08 Score=74.61 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=38.9
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCc-cCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPS-SICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 72 (167)
|++++|. ++.+ |..+..+++|++|++++| .++.+|..+. |+++++ .++.+|. .+..+++|++|++++|
T Consensus 83 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 83 LVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp EECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCCTTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC
T ss_pred EECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccCccccccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC
Confidence 4455542 3433 445566666666666663 4455554433 666663 3444543 4667777777777775
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.78 E-value=2e-08 Score=86.45 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=67.8
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++|. ++.+ |..+.++++|++|++++|.....+ |..+. |++++|......|..++++++|++|++++|
T Consensus 29 LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 29 LLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 6777764 4544 556777888888888887666666 33333 777775544445777777888888888776
Q ss_pred CCCccCCCC------CccCccccccccccccCCC----CccccccccccCC
Q 045006 73 SNLHRLPDE------HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRC 113 (167)
Q Consensus 73 ~~l~~lp~~------~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c 113 (167)
...+.+|.. .+|+.|+++++......+. .+++|+.|+++++
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 433333332 2677777776543222221 2456666666654
No 67
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.77 E-value=1e-08 Score=81.77 Aligned_cols=121 Identities=17% Similarity=-0.003 Sum_probs=75.7
Q ss_pred CCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCC-C----CccCccc
Q 045006 21 ELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPD-E----HSIPNKN 88 (167)
Q Consensus 21 ~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~----~~L~~l~ 88 (167)
++|++|++++|...+..|..+. |++++|...+..|..++.+++|++|++++| .++.++. . .+|+.|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEE
Confidence 5677888887654444454443 888876544445667788888888888885 4444422 1 2777788
Q ss_pred cccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCCCH
Q 045006 89 LNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKLDR 143 (167)
Q Consensus 89 l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l~~ 143 (167)
++++..-...|.. +++|+.|+++++ +++.++.......+.++.+++++++--.+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccC
Confidence 8776533333432 467888888875 56666433323345688888887764433
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.77 E-value=2e-07 Score=66.96 Aligned_cols=114 Identities=31% Similarity=0.431 Sum_probs=83.3
Q ss_pred CEeecCCCCCCccCcc-cCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSLPAE-IFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~-~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 70 (167)
+|+++++ .++.+|.. +..+++|++|++++| .++.+|... . |+++++ .+..+|. .+..+++|++|+++
T Consensus 32 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 32 YLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcC
Confidence 3788887 46777764 678999999999995 666776542 2 999995 5666665 46899999999999
Q ss_pred CCCCCccCCCC-----CccCccccccccccccCCCC----ccccccccccC------Cccchhc
Q 045006 71 GSSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHR------CTALESG 119 (167)
Q Consensus 71 ~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~------c~~L~~~ 119 (167)
+| .+..++.. .+|+.|+++++. ++.++.. +++|+.|++++ |++|+.+
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L 170 (208)
T 2o6s_A 109 TN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 170 (208)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHH
T ss_pred CC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecCCCCHHHH
Confidence 95 66666653 278888888864 5666643 46888888886 4555555
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.77 E-value=4.9e-08 Score=78.73 Aligned_cols=71 Identities=20% Similarity=0.111 Sum_probs=37.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC----ce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCc
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES----RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLH 76 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~----~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 76 (167)
|++++|..++.++ ++.+++|++|++++| .++.+|-. +. +++++| .+..++ ++.+++|++|++++| .++
T Consensus 153 L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~ 225 (457)
T 3bz5_A 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLT 225 (457)
T ss_dssp EECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCS
T ss_pred EECCCCCcccccc--cccCCcCCEEECCCC-ccceeccccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCC-ccc
Confidence 4555555555552 556666666666664 44444411 11 666653 344442 556666666666664 344
Q ss_pred cCC
Q 045006 77 RLP 79 (167)
Q Consensus 77 ~lp 79 (167)
.+|
T Consensus 226 ~ip 228 (457)
T 3bz5_A 226 EID 228 (457)
T ss_dssp CCC
T ss_pred ccC
Confidence 444
No 70
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=3.3e-08 Score=75.05 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=69.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++| .++.+|. +..+++|++|++++| .++.++. +. |++++| .++.+|. +..+++|++|++++| .
T Consensus 51 L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 51 IIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp EECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-C
T ss_pred EEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-c
Confidence 566665 4666654 677778888888875 4444443 22 777774 4555553 667777777777774 3
Q ss_pred CccCCCC---CccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 75 LHRLPDE---HSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 75 l~~lp~~---~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
+..++.- .+|+.|+++++. ++.++.. +++|+.|+++++ .++.+.. ......++.|+++++
T Consensus 124 i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 124 ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCC
Confidence 4444321 256666665543 3333321 345666666654 3444422 112234555555555
No 71
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.77 E-value=7e-08 Score=80.00 Aligned_cols=121 Identities=27% Similarity=0.250 Sum_probs=82.1
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
+|++++| .++.+| ..+++|++|++++| .++.+|. +. |++++| .++.+|. .+++|+.|++++| .+
T Consensus 84 ~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l 152 (571)
T 3cvr_A 84 VLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPASLKHLDVDNN-QLTMLPE---LPALLEYINADNN-QL 152 (571)
T ss_dssp EEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CC
T ss_pred EEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhcCCCEEECCCC-cCCCCCC---cCccccEEeCCCC-cc
Confidence 3677776 477788 45678888888885 5666776 43 888884 5666776 5788888888884 56
Q ss_pred ccCCCCC-ccCccccccccccccCCCCccccccccccCCccchhccccccccCCCc-------cEEeecCC
Q 045006 76 HRLPDEH-SIPNKNLNYSERLQSRPKLPSNLEWLLAHRCTALESGLIFSISYESPL-------RHFDLSGD 138 (167)
Q Consensus 76 ~~lp~~~-~L~~l~l~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l-------~~l~~~~C 138 (167)
+.+|... +|+.|+++++. ++.+|...++|+.|+++++ +++.++. .. ..+ +.|+++++
T Consensus 153 ~~lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N-~L~~lp~-~~---~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 153 TMLPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN-LLESLPA-VP---VRNHHSEETEIFFRCREN 217 (571)
T ss_dssp SCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC-CC-----------CCEEEECCSS
T ss_pred CcCCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC-CCCchhh-HH---HhhhcccccceEEecCCC
Confidence 6677643 77778887764 6667775568888888876 5666544 21 145 77777775
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.76 E-value=2e-08 Score=83.17 Aligned_cols=71 Identities=27% Similarity=0.316 Sum_probs=49.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++| .++.+|. ++.+++|++|++++| .+..+|..++ |++++ +.++.+| .++++++|++|++++| .
T Consensus 446 L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 446 LHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN-R 519 (567)
T ss_dssp EECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS-C
T ss_pred EEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC-C
Confidence 677776 5777776 788888888888884 5557776554 77777 3555566 6777777777777774 4
Q ss_pred CccC
Q 045006 75 LHRL 78 (167)
Q Consensus 75 l~~l 78 (167)
+..+
T Consensus 520 l~~~ 523 (567)
T 1dce_A 520 LQQS 523 (567)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5544
No 73
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.75 E-value=7.1e-08 Score=68.84 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=68.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC--ce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES--RV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~--~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
++++++ .++.+|..+.. ++++|+++++ .++.+|.. +. |+++++...+..|..+..+++|++|++++|
T Consensus 13 l~~s~~-~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 13 VDCTGR-GLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EECTTS-CCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCC-CcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 567765 57888876543 8999999985 56666643 33 888885444444778888889999999885
Q ss_pred CCCccCCCC-----CccCccccccccccccCCCC---ccccccccccC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHR 112 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~ 112 (167)
.+..++.. .+|+.|+++++..-...|.. +++|+.|++++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 55554432 26666677665432233332 34566666654
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.75 E-value=7.3e-08 Score=83.01 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=79.1
Q ss_pred CEeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCcc--CCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSS--ICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~--l~~l~~L~~L~l~ 70 (167)
+|++++|.....+ |..++++++|++|++++|......|..+. |++++|...+.+|.. ++++++|++|+++
T Consensus 52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls 131 (844)
T 3j0a_A 52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131 (844)
T ss_dssp EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence 4788988777788 66789999999999999755444576665 999997655556655 8899999999999
Q ss_pred CCCCCccCCC------CCccCccccccccccccCCCCc-----cccccccccCCc
Q 045006 71 GSSNLHRLPD------EHSIPNKNLNYSERLQSRPKLP-----SNLEWLLAHRCT 114 (167)
Q Consensus 71 ~c~~l~~lp~------~~~L~~l~l~~c~~l~~l~~~~-----~~L~~L~l~~c~ 114 (167)
+|. +..++. -.+|+.|+++++..-...+..+ .+|+.|+++++.
T Consensus 132 ~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 132 KNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp SCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 964 443322 1378888887765333233322 466777776653
No 75
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.75 E-value=8.2e-08 Score=68.69 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCC-ccCCCCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 73 (167)
++++++ .++.+|..+. .+|++|++++ +.++.+|..+. |+++++ .+..++ ..+.++++|++|++++|
T Consensus 15 l~~~~~-~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 15 VRCSNK-GLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp EECTTS-CCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEcCCC-CCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-
Confidence 455654 5788887553 5789999988 46777775544 888884 455554 46788888999998884
Q ss_pred CCccCCCC-----CccCccccccccccccCCCC----ccccccccccC
Q 045006 74 NLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHR 112 (167)
Q Consensus 74 ~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~ 112 (167)
.+..++.. .+|+.|+++++ .++.+|.. +++|+.|++++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 56666543 26777777664 35566542 45677777664
No 76
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.75 E-value=3.7e-08 Score=78.57 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=79.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++|...+.+|..++.+++|++|++++|...+..|..+. |++++|...+..|..++.+++|++|++++| .
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 358 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-H 358 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-C
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-c
Confidence 56677654444577789999999999999754444454443 999997554444678899999999999996 4
Q ss_pred CccC-CCC----CccCccccccccccccCCCC----ccccccccccCC
Q 045006 75 LHRL-PDE----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRC 113 (167)
Q Consensus 75 l~~l-p~~----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c 113 (167)
+..+ |.. .+|+.|+++++ .++.+|.. +++|+.|+++++
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCC
Confidence 4544 433 37888999885 46667652 568888988854
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.74 E-value=5.1e-08 Score=75.16 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=66.3
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|+++++ .+..+|. +..+++|++|++++| .+..+|. .+. |++++| .+..+| .+..+++|++|++++| .+
T Consensus 49 L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n-~i 122 (347)
T 4fmz_A 49 LVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNED-NI 122 (347)
T ss_dssp EECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTS-CC
T ss_pred EEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCC-cc
Confidence 566665 4666765 777888888888885 5555553 111 788775 555665 4777888888888875 34
Q ss_pred ccCCC---CCccCccccccccccccCCCC--ccccccccccCC
Q 045006 76 HRLPD---EHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRC 113 (167)
Q Consensus 76 ~~lp~---~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c 113 (167)
..++. -.+|+.+++++|..+..++.. +++|+.|++++|
T Consensus 123 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 44432 226677777777655555432 345666666554
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.74 E-value=5.9e-08 Score=79.94 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=47.4
Q ss_pred CCCccCcccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCC
Q 045006 9 ILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLP 79 (167)
Q Consensus 9 ~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp 79 (167)
+++++|..+- +++++||+++ +.++.+|. .+. |++++| .+..+|+ .+.++++|++|++++| .++.+|
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~ 116 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 116 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CcCccCCCCC--cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCC
Confidence 3445554331 3456666665 34555443 222 566553 3444433 4555666666666653 344444
Q ss_pred CC-----CccCccccccccccccCCCC----ccccccccccCC
Q 045006 80 DE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRC 113 (167)
Q Consensus 80 ~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c 113 (167)
.. .+|+.|+++++. ++.+|.. +++|+.|+++++
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC
Confidence 32 155555555542 4444432 345555555554
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.73 E-value=2e-07 Score=67.89 Aligned_cols=132 Identities=10% Similarity=0.077 Sum_probs=85.6
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccC-CCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRL-PES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~l-p~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
++++++ .++.+|..+. ..+++|++++| .++.+ |.. +. |+++++ .+..++. .+..+++|++|++++
T Consensus 16 l~~s~n-~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 16 VDCSNQ-KLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EECCSS-CCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeCCC-CcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 556664 5778887554 45688999985 56655 322 22 888884 4555554 788899999999988
Q ss_pred CCCCccCCCC-----CccCccccccccccccC-CCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSR-PKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l-~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
| .+..++.. .+|+.|+++++. ++.+ |.. +++|+.|+++++ +++.+..........++.+++++.+--
T Consensus 91 N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 N-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp S-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred C-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5 55555543 277888887765 4444 332 467888888875 466662222223346888888887643
No 80
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=1.3e-08 Score=69.51 Aligned_cols=67 Identities=21% Similarity=0.092 Sum_probs=32.5
Q ss_pred EeecCCCCCC--ccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILK--SLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~--~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
|++++|. ++ .+|..+..+++|++|++++| .+..+ ..+. |++++|...+.+|..++.+++|++|++++
T Consensus 22 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 22 LVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp EECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred EEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 5566653 33 56665566666666666664 33332 1111 45544322222444444445555555544
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.72 E-value=6.1e-08 Score=80.88 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=70.6
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|++++| .+..+|. +..+++|+.|++++| .+..+|. .+. |++++| .+..+| .+..+++|+.|++++| .+
T Consensus 48 L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l 121 (605)
T 1m9s_A 48 IIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN-GI 121 (605)
T ss_dssp CBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS-CC
T ss_pred EECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC-CC
Confidence 566665 4666764 777888888888885 4444443 111 777774 455555 5777777888887775 34
Q ss_pred ccCCCC---CccCccccccccccccCCC--CccccccccccCCccchhccccccccCCCccEEeecCC
Q 045006 76 HRLPDE---HSIPNKNLNYSERLQSRPK--LPSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 76 ~~lp~~---~~L~~l~l~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C 138 (167)
..++.. .+|+.|++++|. +..++. .+++|+.|++++| .++.+.. ......|+.|++++|
T Consensus 122 ~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 122 SDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCC
Confidence 444321 256666666543 333332 1345666666654 2333322 112234555555554
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.72 E-value=6e-08 Score=76.14 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=41.8
Q ss_pred EeecCCCCCCccCcc-cCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAE-IFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~-~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.+|.. +..+++|++|++++| .+..+|. .+. |++++|......|..++++++|++|++++|
T Consensus 50 l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 50 VTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp EEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 344443 34555543 345566666666654 3333332 222 566654322222334555666666666653
Q ss_pred CCCccCCCCC-----ccCccccccc
Q 045006 73 SNLHRLPDEH-----SIPNKNLNYS 92 (167)
Q Consensus 73 ~~l~~lp~~~-----~L~~l~l~~c 92 (167)
.+..+|... +|+.|+++++
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCC
Confidence 444444321 4555555544
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.71 E-value=1.6e-07 Score=72.07 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=73.9
Q ss_pred CcccCCCCCCCEEeccCCCCCccCCCCce-----EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCC-----Cc
Q 045006 14 PAEIFLLELLKKLNFSGCSKLKRLPESRV-----LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDE-----HS 83 (167)
Q Consensus 14 p~~~~~l~~L~~L~ls~c~~l~~lp~~~~-----L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-----~~ 83 (167)
+..+..+++|++|++++| .++.+|..+. |++++|...+..|..+..+++|++|++++| .+..++.. .+
T Consensus 164 ~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPH 241 (330)
T ss_dssp TTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTT
T ss_pred hhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCC
Confidence 344556666666666663 4555554433 777775443344667788888888888885 45544432 27
Q ss_pred cCccccccccccccCCCC---ccccccccccCCccchhccc-ccc-----ccCCCccEEeecCCCC
Q 045006 84 IPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLI-FSI-----SYESPLRHFDLSGDFK 140 (167)
Q Consensus 84 L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~-~~~-----~~~~~l~~l~~~~C~~ 140 (167)
|+.|+++++ .++.+|.. +++|+.|+++++ .++.+.. ... .....+..+++.+.+-
T Consensus 242 L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 242 LRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 777888776 46677754 457788888876 3555521 111 1123466677776653
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.71 E-value=1.1e-07 Score=78.82 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=30.4
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCcc-CCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 71 (167)
|++++|. ++.+|+ .++.+++|++|++++|. +..+|.. ++ |++++| .+..+|.. ++++++|++|++++
T Consensus 80 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 80 LNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp EECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeC
Confidence 4444442 333332 44555555555555532 3333321 11 555553 33444443 24555555555555
Q ss_pred C
Q 045006 72 S 72 (167)
Q Consensus 72 c 72 (167)
|
T Consensus 157 N 157 (597)
T 3oja_B 157 N 157 (597)
T ss_dssp S
T ss_pred C
Confidence 3
No 85
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.70 E-value=1.5e-07 Score=73.92 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=69.3
Q ss_pred CEeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCcc-CCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~ 70 (167)
+|++++| .++.+|. .+..+++|++|++++|. +..+| ..+. |++++| .++.+|.. ++++++|++|+++
T Consensus 73 ~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 73 LLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECC
Confidence 3678877 4666664 68889999999999964 55554 3333 899984 66778776 4789999999999
Q ss_pred CCCCCccCCCC-----CccCccccccccccccCC-CCcccccccccc
Q 045006 71 GSSNLHRLPDE-----HSIPNKNLNYSERLQSRP-KLPSNLEWLLAH 111 (167)
Q Consensus 71 ~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~-~~~~~L~~L~l~ 111 (167)
+| .+..++.. .+|+.|+++++. ++.++ ..+++++.++++
T Consensus 150 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 150 NN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVS 194 (390)
T ss_dssp SS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECC
T ss_pred CC-ccCccChhhccCCCCCCEEECCCCc-CCccccccccccceeecc
Confidence 85 45555432 277777777654 33332 123444444443
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.70 E-value=8e-08 Score=78.58 Aligned_cols=109 Identities=23% Similarity=0.250 Sum_probs=64.1
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.++. .+..+++|++|++++| .+..++. .+. |+++++......|..++++++|++|++++|
T Consensus 33 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 33 LDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp EECCSC-CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEccCC-ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 566665 3555543 5677778888888876 3554442 222 777775433333456777778888888774
Q ss_pred CCCccCCCC-----CccCccccccccccc-cCCCC---ccccccccccCC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQ-SRPKL---PSNLEWLLAHRC 113 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~-~l~~~---~~~L~~L~l~~c 113 (167)
.+..++.. .+|+.|+++++.... .+|.. +++|+.|+++++
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp -CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred -ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 45554432 266777776654322 24543 346677776654
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.69 E-value=1.5e-07 Score=78.07 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=57.0
Q ss_pred CEeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
+|++++|. ++.+|+ .++.+++|++|++++| .+..+|..+ + |++++|...+..|..++.+++|++|++++
T Consensus 103 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 103 KLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 37888875 666665 5689999999999996 677777653 2 99999755555566789999999999998
Q ss_pred CCCCccCC
Q 045006 72 SSNLHRLP 79 (167)
Q Consensus 72 c~~l~~lp 79 (167)
| .+..++
T Consensus 181 N-~l~~~~ 187 (597)
T 3oja_B 181 N-RLTHVD 187 (597)
T ss_dssp S-CCSBCC
T ss_pred C-CCCCcC
Confidence 6 444443
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.69 E-value=1.1e-08 Score=78.25 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=45.5
Q ss_pred EeecCCCCCCccCccc--CCCCCCCEEeccCCCCCccCCC-----------Cce-EEecCCCCCccCCccCCCCCCCCee
Q 045006 2 LNLGGCEILKSLPAEI--FLLELLKKLNFSGCSKLKRLPE-----------SRV-LIRCGCKRLKSLPSSICQLKPLQVL 67 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~--~~l~~L~~L~ls~c~~l~~lp~-----------~~~-L~l~~c~~l~~lp~~l~~l~~L~~L 67 (167)
|++++|...+.+|..+ ..+++|++|++++|. +..+|. .+. |++++|...+..|..++.+++|++|
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 6777765444677765 778888888888854 443342 233 7777754333334667777777777
Q ss_pred eecCCC
Q 045006 68 NLHGSS 73 (167)
Q Consensus 68 ~l~~c~ 73 (167)
++++|.
T Consensus 179 ~Ls~N~ 184 (312)
T 1wwl_A 179 DLSDNP 184 (312)
T ss_dssp ECCSCT
T ss_pred ECCCCC
Confidence 777765
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=5e-08 Score=73.07 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCC-
Q 045006 10 LKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDE- 81 (167)
Q Consensus 10 l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~- 81 (167)
+++++ .+..+++|++|++++| .++.+| .+. |++++| .+..+|. +..+++|++|++++| .++.+|..
T Consensus 31 i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~ 104 (263)
T 1xeu_A 31 VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP 104 (263)
T ss_dssp TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC
T ss_pred ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCccc
Confidence 44444 2444555555555553 344444 111 555552 3444444 555555555555553 33333221
Q ss_pred -CccCccccccc
Q 045006 82 -HSIPNKNLNYS 92 (167)
Q Consensus 82 -~~L~~l~l~~c 92 (167)
.+|+.|+++++
T Consensus 105 ~~~L~~L~L~~N 116 (263)
T 1xeu_A 105 SACLSRLFLDNN 116 (263)
T ss_dssp CSSCCEEECCSS
T ss_pred cCcccEEEccCC
Confidence 24444444443
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=6.1e-08 Score=72.60 Aligned_cols=103 Identities=24% Similarity=0.196 Sum_probs=62.3
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++| .++.+| .+..+++|++|++++| .++.+|. +. |++++| .++.+|... . ++|++|++++| .
T Consensus 46 L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~N-~ 117 (263)
T 1xeu_A 46 FNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDNN-E 117 (263)
T ss_dssp EECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCSS-C
T ss_pred EECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccCC-c
Confidence 567766 567777 4777788888888874 5555553 22 777773 555666433 2 77777777774 4
Q ss_pred CccCCC---CCccCccccccccccccCCCC--ccccccccccCC
Q 045006 75 LHRLPD---EHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRC 113 (167)
Q Consensus 75 l~~lp~---~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c 113 (167)
++.++. -.+|+.|+++++. ++.++.. +++|+.|+++++
T Consensus 118 l~~~~~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 118 LRDTDSLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSBSGGGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS
T ss_pred cCCChhhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC
Confidence 444432 1256666666643 4555432 456666666654
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.68 E-value=2.5e-08 Score=76.29 Aligned_cols=130 Identities=22% Similarity=0.131 Sum_probs=73.0
Q ss_pred EeecCCCCCCccCcccCCC-----CCCCEEeccCCCCCccCC-CCce-------EEecCCCCCcc--CCccC--CCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLL-----ELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKS--LPSSI--CQLKPL 64 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l-----~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~--lp~~l--~~l~~L 64 (167)
|++++|. ++.+|..++.+ ++|++|++++|. +..+| ..++ |++++|...+. +|..+ +.+++|
T Consensus 126 L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 203 (312)
T 1wwl_A 126 LNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203 (312)
T ss_dssp EEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred EEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence 5666653 55556555555 777777777754 34443 4433 77777654443 23334 677777
Q ss_pred CeeeecCCCCCccC---CCC-----CccCccccccccccccCC--C--CccccccccccCCccchhccccccccCCCccE
Q 045006 65 QVLNLHGSSNLHRL---PDE-----HSIPNKNLNYSERLQSRP--K--LPSNLEWLLAHRCTALESGLIFSISYESPLRH 132 (167)
Q Consensus 65 ~~L~l~~c~~l~~l---p~~-----~~L~~l~l~~c~~l~~l~--~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~ 132 (167)
++|++++| .+..+ +.. .+|+.|+++++..-...| . .+++|+.|+++++ +++.++.... +.++.
T Consensus 204 ~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~ 278 (312)
T 1wwl_A 204 QVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSV 278 (312)
T ss_dssp CEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC---SEEEE
T ss_pred CEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc---CCceE
Confidence 77777775 34422 211 267777776654322221 1 1457777777775 3555533222 45677
Q ss_pred EeecCC
Q 045006 133 FDLSGD 138 (167)
Q Consensus 133 l~~~~C 138 (167)
|+++++
T Consensus 279 L~Ls~N 284 (312)
T 1wwl_A 279 LDLSYN 284 (312)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 777766
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.68 E-value=2.6e-07 Score=71.02 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=59.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCC--ccCCccCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRL--KSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~ 71 (167)
|++++| .++.+|..+. ++|++|++++| .++.+|.. +. |+++++..- +..|..+..+ +|++|++++
T Consensus 107 L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 556654 3556665444 56666666663 34444432 11 555553321 1233344444 444444444
Q ss_pred CCCCccCCCC--------------------------CccCccccccccccccCCC----CccccccccccCCccchhccc
Q 045006 72 SSNLHRLPDE--------------------------HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESGLI 121 (167)
Q Consensus 72 c~~l~~lp~~--------------------------~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~~ 121 (167)
| .+..+|.. .+|+.|+++++. ++.++. .+++|+.|+++++ +++.++.
T Consensus 182 n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 182 A-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp S-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred C-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecCh
Confidence 2 23333322 144555554442 333332 1345666666655 3444433
Q ss_pred cccccCCCccEEeecCC
Q 045006 122 FSISYESPLRHFDLSGD 138 (167)
Q Consensus 122 ~~~~~~~~l~~l~~~~C 138 (167)
... ..+.++.++++++
T Consensus 259 ~l~-~l~~L~~L~l~~N 274 (332)
T 2ft3_A 259 GLP-DLKLLQVVYLHTN 274 (332)
T ss_dssp TGG-GCTTCCEEECCSS
T ss_pred hhh-cCccCCEEECCCC
Confidence 221 2235667777765
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=8e-08 Score=74.07 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCC---CCCccCccccccccccccCCCC--ccccccccccCCccch
Q 045006 43 LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLP---DEHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALE 117 (167)
Q Consensus 43 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp---~~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~ 117 (167)
|++++| .+..+|. +..+++|++|++++| .+..++ .-.+|+.+++++| .++.++.. +++|+.|++++|. ++
T Consensus 226 L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 226 LKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp EECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CC
T ss_pred EEccCC-ccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CC
Confidence 555553 3333443 555556666666554 333322 1125555555554 23333322 3456666666652 33
Q ss_pred hccccccccCCCccEEeecCCC
Q 045006 118 SGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
..........+.++.+++++|+
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSS
T ss_pred CcChhHhhccccCCEEEccCCc
Confidence 3311111112346666666665
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.67 E-value=1.8e-08 Score=85.63 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=44.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++| .+..+|..++.+++|++|++++| .+..+|..++ |++++| .+..+|..++++++|++|++++| .
T Consensus 229 L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~ 304 (727)
T 4b8c_D 229 LDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-M 304 (727)
T ss_dssp EECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-C
T ss_pred EECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-C
Confidence 445544 24455555555555666666553 3445554443 555553 34455555555556666666553 4
Q ss_pred CccCCCCC----ccCccccccc
Q 045006 75 LHRLPDEH----SIPNKNLNYS 92 (167)
Q Consensus 75 l~~lp~~~----~L~~l~l~~c 92 (167)
++.+|... +|+.|+++++
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTS
T ss_pred CCccChhhhcCCCccEEeCCCC
Confidence 44555432 4444554444
No 95
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.66 E-value=1.5e-07 Score=68.58 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=75.9
Q ss_pred EeecCCCCCCccCc--ccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCC-ccCCCCCCCCeeeec
Q 045006 2 LNLGGCEILKSLPA--EIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLH 70 (167)
Q Consensus 2 L~l~~c~~l~~lp~--~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~ 70 (167)
|+++++ .++.+++ .+..+++|++|++++| .++.++. .+. |+++++ .+..+| ..+..+++|++|+++
T Consensus 37 L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 37 LRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp EECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECT
T ss_pred EEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECC
Confidence 778876 5777743 3688999999999995 5666654 333 999995 455555 458899999999999
Q ss_pred CCCCCccCC-CC----CccCccccccccccccC-CCC---ccccccccccCC
Q 045006 71 GSSNLHRLP-DE----HSIPNKNLNYSERLQSR-PKL---PSNLEWLLAHRC 113 (167)
Q Consensus 71 ~c~~l~~lp-~~----~~L~~l~l~~c~~l~~l-~~~---~~~L~~L~l~~c 113 (167)
+| .+..++ .. .+|+.|+++++. ++.+ |.. +++|+.|++++.
T Consensus 114 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 114 SN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 95 555553 32 278888888764 5555 433 457788888754
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.66 E-value=8.7e-08 Score=78.95 Aligned_cols=108 Identities=27% Similarity=0.332 Sum_probs=81.4
Q ss_pred CEeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCCc-cCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 70 (167)
+|+++++ .++.+|+ .+.++++|++|++++| .++.+|+. +. |++++| .++.+|. .+.++++|++|+++
T Consensus 56 ~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 56 NLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECT
T ss_pred EEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECC
Confidence 4889986 6888875 6899999999999996 67777653 33 999995 5777775 57899999999999
Q ss_pred CCCCCccCCCC-----CccCcccccccccccc--CCCC---ccccccccccCC
Q 045006 71 GSSNLHRLPDE-----HSIPNKNLNYSERLQS--RPKL---PSNLEWLLAHRC 113 (167)
Q Consensus 71 ~c~~l~~lp~~-----~~L~~l~l~~c~~l~~--l~~~---~~~L~~L~l~~c 113 (167)
+| .++.++.. .+|+.|+++++. ++. +|.. +++|+.|+++++
T Consensus 133 ~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 133 ET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 95 66776654 278888888765 333 3433 467888888775
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=9.2e-08 Score=74.30 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=45.5
Q ss_pred CCCCCccC-cccCCCCCCCEEeccCCCCCccCCCCce--------EEecCCCCCccCCc-cCCCC-CCCCeeeecCCCCC
Q 045006 7 CEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPESRV--------LIRCGCKRLKSLPS-SICQL-KPLQVLNLHGSSNL 75 (167)
Q Consensus 7 c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~~~~--------L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~c~~l 75 (167)
++.++.+| ..+..+++|++|++++| .+..+|.... +++.++..+..+|. .+..+ ..++.|++++ +.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCC
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccc
Confidence 34566664 34677788888888774 4555543211 55555455555443 22222 2345555554 244
Q ss_pred ccCCCCC----ccCccccccccccccCC
Q 045006 76 HRLPDEH----SIPNKNLNYSERLQSRP 99 (167)
Q Consensus 76 ~~lp~~~----~L~~l~l~~c~~l~~l~ 99 (167)
+.+|... ++..+.+.+++.++.+|
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred cCCChhhccccchhHHhhccCCcccCCC
Confidence 4444332 34444444444444444
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.65 E-value=1.6e-07 Score=78.63 Aligned_cols=133 Identities=20% Similarity=0.172 Sum_probs=79.4
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCc-cCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.+|+ .+..+++|++|++++|...+..|..+. |++++| .+..+|. .++++++|++|++++|
T Consensus 30 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 30 LNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC
Confidence 667766 4666664 477788888888888543333343332 888874 5666765 5788888888888885
Q ss_pred CCCccCCCC-----CccCccccccccccccCCCC---ccccccccccCCccchhccc-ccc-ccCCCccEEeecCC
Q 045006 73 SNLHRLPDE-----HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLI-FSI-SYESPLRHFDLSGD 138 (167)
Q Consensus 73 ~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~-~~~-~~~~~l~~l~~~~C 138 (167)
.+..++.. .+|+.|+++++......|.. +++|+.|+++++. ++.+.. ... .....++.++++++
T Consensus 108 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 108 -SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp -CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred -ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 45555532 27777778776543333332 4567777777652 333311 110 11134666666665
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.64 E-value=7.6e-08 Score=73.05 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=86.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|++++| .++.+++ +..+++|++|++++| .++.+|. .+. |++++| .+..++ .+..+++|++|++++| .+
T Consensus 73 L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n-~l 146 (291)
T 1h6t_A 73 LFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KI 146 (291)
T ss_dssp EECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSS-CC
T ss_pred EEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCC-cC
Confidence 678876 5777777 889999999999995 5665553 122 899985 566664 5778899999999985 45
Q ss_pred ccCCC---CCccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 76 HRLPD---EHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 76 ~~lp~---~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
..++. -.+|+.|+++++. ++.++.. +++|+.|+++++ .++++.. . ...+.++.+++++++
T Consensus 147 ~~~~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l-~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 TDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA-L-AGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG-G-TTCTTCSEEEEEEEE
T ss_pred CcchhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCC-cCCCChh-h-ccCCCCCEEECcCCc
Confidence 55432 2378888887764 5555432 467888888876 4555522 1 123457777777653
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.63 E-value=1.3e-07 Score=79.16 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=76.8
Q ss_pred CEeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCC-ce-------EEecCCCCCccCC-ccCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPES-RV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~-~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~ 70 (167)
+|++++|. ++.+ |..++++++|++|++++| .+..+|.. +. |++++|. +..+| ..++++++|++|+++
T Consensus 53 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 53 SLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp EEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECC
T ss_pred EEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECC
Confidence 36788774 4444 566788999999999985 66777763 33 8999864 45554 578899999999999
Q ss_pred CCCCCccCCCC----CccCccccccccccccCCC------CccccccccccCCccchhc
Q 045006 71 GSSNLHRLPDE----HSIPNKNLNYSERLQSRPK------LPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 71 ~c~~l~~lp~~----~~L~~l~l~~c~~l~~l~~------~~~~L~~L~l~~c~~L~~~ 119 (167)
+|......|.. .+|+.|+++++. ++.++. ..++|+.|+++++ .++.+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 186 (680)
T 1ziw_A 130 HNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN-QIKEF 186 (680)
T ss_dssp SSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC-CCCCB
T ss_pred CCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC-ccccc
Confidence 86433332322 277888887764 444432 1357888888876 34444
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.63 E-value=1.9e-07 Score=66.80 Aligned_cols=87 Identities=25% Similarity=0.433 Sum_probs=66.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCC-ccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLP-SSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c 72 (167)
|+++++ .++.+|..+..+++|++|++++| .++.++. .+. |+++++ .+..+| ..+..+++|++|++++|
T Consensus 36 L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 36 LYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp EECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCC
Confidence 678876 58899988999999999999995 5666654 233 999995 556655 47899999999999994
Q ss_pred CCCccCCCCC-----ccCccccccc
Q 045006 73 SNLHRLPDEH-----SIPNKNLNYS 92 (167)
Q Consensus 73 ~~l~~lp~~~-----~L~~l~l~~c 92 (167)
.+..+|... +|+.++++++
T Consensus 113 -~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 113 -DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred -CCCeeChhhhhcCccccEEEeCCC
Confidence 677777642 5666666654
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.62 E-value=4.8e-08 Score=83.07 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCCC
Q 045006 10 LKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEH 82 (167)
Q Consensus 10 l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~ 82 (167)
+...|..+..+..|+.|++++| .+..+|..+. |++++| .+..+|..++++++|++|++++| .+..+|...
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 289 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAEL 289 (727)
T ss_dssp ---------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSG
T ss_pred eecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhh
Confidence 3344666788999999999995 5668887654 899985 66699999999999999999995 577888764
Q ss_pred ----ccCccccccccccccCCCC---ccccccccccCCc
Q 045006 83 ----SIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCT 114 (167)
Q Consensus 83 ----~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~ 114 (167)
+|+.|+++++ .++.+|.. +.+|+.|+++++.
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 7888888886 46788865 4578888888763
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.62 E-value=6.3e-08 Score=73.89 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=49.9
Q ss_pred EeecCCCCCCccCccc--CCCCCCCEEeccCCCCCccCC----------CCce-EEecCCCCCccCCccCCCCCCCCeee
Q 045006 2 LNLGGCEILKSLPAEI--FLLELLKKLNFSGCSKLKRLP----------ESRV-LIRCGCKRLKSLPSSICQLKPLQVLN 68 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~--~~l~~L~~L~ls~c~~l~~lp----------~~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~ 68 (167)
|++++|...+..|..+ ..+++|++|++++|...+..| ..+. |++++|......|..++.+++|++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 6788876555667666 788889999998865443322 1222 88888655444456777888888888
Q ss_pred ecCCCC
Q 045006 69 LHGSSN 74 (167)
Q Consensus 69 l~~c~~ 74 (167)
+++|..
T Consensus 176 Ls~N~l 181 (310)
T 4glp_A 176 LSDNPG 181 (310)
T ss_dssp CCSCTT
T ss_pred CCCCCC
Confidence 888653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.62 E-value=3.1e-07 Score=66.92 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=78.1
Q ss_pred EeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|. .+..+++|++|++++| .+..+ |..+. |++++ +.+..+|.. +..+++|++|++++
T Consensus 37 L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 37 IRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp EECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCC
Confidence 678876 5777775 6788999999999996 45544 55444 99998 567778765 57899999999999
Q ss_pred CCCCccCCCC-----CccCccccccccccccCCCC----ccccccccccCC
Q 045006 72 SSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL----PSNLEWLLAHRC 113 (167)
Q Consensus 72 c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~----~~~L~~L~l~~c 113 (167)
| .+..++.. .+|+.|+++++. ++.++.. +++|+.+++++.
T Consensus 114 N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 114 N-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 5 56665433 278888887764 5666542 457888888753
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=1.5e-07 Score=65.33 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=81.2
Q ss_pred CEeecCCCCCC--ccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILK--SLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~--~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
+|++++|. ++ .+|..+..+++|++|++++|. ++.+ ..+. |++++|.....+|..+.++++|++|++++
T Consensus 28 ~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 28 ELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp EEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred EEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 37888885 55 899888999999999999975 6555 3332 99999655444787777799999999999
Q ss_pred CCCCccCCC--C----CccCccccccccccccCCC-------CccccccccccCCc
Q 045006 72 SSNLHRLPD--E----HSIPNKNLNYSERLQSRPK-------LPSNLEWLLAHRCT 114 (167)
Q Consensus 72 c~~l~~lp~--~----~~L~~l~l~~c~~l~~l~~-------~~~~L~~L~l~~c~ 114 (167)
| .+..+|. . .+|+.|+++++. +..+|. .+++|+.|++.+|.
T Consensus 105 N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 105 N-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp S-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred C-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 6 5666542 1 278888888874 566665 25688888888774
No 106
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=8.1e-07 Score=62.20 Aligned_cols=72 Identities=29% Similarity=0.418 Sum_probs=39.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 72 (167)
++++++ .++.+|..+ .++|++|++++| .++.+|... . |+++++ .+..+|. .+..+++|++|++++|
T Consensus 12 l~~~~~-~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 12 IRCNSK-GLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EECCSS-CCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEecCC-CCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 344443 466777543 367888888874 355554321 1 666663 4444443 3456666666666663
Q ss_pred CCCccCC
Q 045006 73 SNLHRLP 79 (167)
Q Consensus 73 ~~l~~lp 79 (167)
.++.+|
T Consensus 87 -~l~~~~ 92 (177)
T 2o6r_A 87 -KLQSLP 92 (177)
T ss_dssp -CCCCCC
T ss_pred -CccccC
Confidence 444443
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.56 E-value=7.3e-07 Score=69.49 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCCccCcccCCCCCCCEEeccCCCCCccCCCCc---e------EEecCCCCCccCC-ccCCCCCCCCeeeecCCCCCccC
Q 045006 9 ILKSLPAEIFLLELLKKLNFSGCSKLKRLPESR---V------LIRCGCKRLKSLP-SSICQLKPLQVLNLHGSSNLHRL 78 (167)
Q Consensus 9 ~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~---~------L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l 78 (167)
.++.+|..+. ..++.|++++| .+..+|... . |+++++ .+..++ ..+.++++|++|++++| .+..+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~ 103 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTL 103 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred CcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcC
Confidence 4555665332 34566666663 444443221 1 666653 333333 34556666666666663 34444
Q ss_pred CCC-----CccCccccccccccccC-CC---CccccccccccCCccchhc
Q 045006 79 PDE-----HSIPNKNLNYSERLQSR-PK---LPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 79 p~~-----~~L~~l~l~~c~~l~~l-~~---~~~~L~~L~l~~c~~L~~~ 119 (167)
+.. .+|+.|+++++. +..+ |. .+++|+.|+++++ +++.+
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l 151 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRF 151 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSC
T ss_pred CHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCee
Confidence 332 155555555543 2332 21 1345555555554 34444
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.55 E-value=1.6e-07 Score=71.85 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=83.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCC-CCce-------EEecCCCCCccCCccC-CCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLP-ESRV-------LIRCGCKRLKSLPSSI-CQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp-~~~~-------L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c 72 (167)
|++++| .++.++. ..+++|++|++++| .+..++ ..+. |++++|......|..+ ..+++|++|++++|
T Consensus 104 L~l~~n-~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANN-NISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSS-CCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCC-ccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 455554 3444543 23567888888875 344443 2322 8888854433334444 36788999999885
Q ss_pred CCCccCCCC---CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 73 SNLHRLPDE---HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 73 ~~l~~lp~~---~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
.+..++.. .+|+.|+++++. ++.+|.. +++|+.|+++++ .++.++... ...+.++.+++++++-.
T Consensus 180 -~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 180 -FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL-RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC-CCCTTCCEEECTTCCCB
T ss_pred -cCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHh-hcCCCCCEEEccCCCcc
Confidence 45555443 277888887764 5566543 467889999887 567664433 23357899999998765
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.55 E-value=3.2e-07 Score=71.57 Aligned_cols=135 Identities=19% Similarity=0.114 Sum_probs=88.9
Q ss_pred CEeecCCCCCCccCcc-cC-CCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCc-cCCCCCCCCeeee
Q 045006 1 MLNLGGCEILKSLPAE-IF-LLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPS-SICQLKPLQVLNL 69 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~-~~-~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l 69 (167)
+|+++++ .++.++.. +. .+++|++|++++| .+..++. .+. |+++++ .+..+|. .+..+++|++|++
T Consensus 43 ~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 43 LLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp EEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC
Confidence 3788886 57777764 44 8999999999995 6666653 232 999995 5666654 6788999999999
Q ss_pred cCCCCCccCCCC-----CccCccccccccccccCCCC-------ccccccccccCCccchhccc-cccccCC-CccEEee
Q 045006 70 HGSSNLHRLPDE-----HSIPNKNLNYSERLQSRPKL-------PSNLEWLLAHRCTALESGLI-FSISYES-PLRHFDL 135 (167)
Q Consensus 70 ~~c~~l~~lp~~-----~~L~~l~l~~c~~l~~l~~~-------~~~L~~L~l~~c~~L~~~~~-~~~~~~~-~l~~l~~ 135 (167)
++| .+..++.. .+|+.|+++++ .++.+|.. +++|+.|++++. +++.++. ....... .++.+++
T Consensus 120 ~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 120 YNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEEC
T ss_pred CCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEe
Confidence 995 45554322 37888888775 46667643 568888888875 4665521 1111111 1345777
Q ss_pred cCCCCC
Q 045006 136 SGDFKL 141 (167)
Q Consensus 136 ~~C~~l 141 (167)
.+.+--
T Consensus 197 ~~N~~~ 202 (361)
T 2xot_A 197 HNNPLE 202 (361)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 775533
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.54 E-value=1e-07 Score=77.36 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=59.4
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCC----CCce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLP----ESRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp----~~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|++++|. ++.+| ..+..+++|++|++++|...+..| ..+. |++++| .+..+|. .++|++|++++| .+
T Consensus 39 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N-~l 111 (487)
T 3oja_A 39 LDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-NI 111 (487)
T ss_dssp EECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSS-CC
T ss_pred EEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCC-cC
Confidence 4455542 33332 345555555555555543221111 0011 555553 3333332 145555555553 22
Q ss_pred ccCCCC--CccCccccccccccccCCCC---ccccccccccCCccchhc-cccccccCCCccEEeecCCC
Q 045006 76 HRLPDE--HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 76 ~~lp~~--~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~ 139 (167)
..++.. .+|+.|+++++..-...|.. +++|+.|+++++ .++.. +.......+.++.|++++|.
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc
Confidence 222211 14555566554422222222 456777777765 35444 32222233567888887774
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=4.3e-07 Score=69.20 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=83.7
Q ss_pred EeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCcc--CC-----C---Cce-EEecCCCCCccCCcc----CCCCCCCC
Q 045006 2 LNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKR--LP-----E---SRV-LIRCGCKRLKSLPSS----ICQLKPLQ 65 (167)
Q Consensus 2 L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~--lp-----~---~~~-L~l~~c~~l~~lp~~----l~~l~~L~ 65 (167)
|++++|. +..+ |..++.+++|++|++++|...+. ++ . .+. |++++| .++.+|.. ++++++|+
T Consensus 150 L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 150 LSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPH 227 (310)
T ss_dssp EEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCS
T ss_pred EEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCC
Confidence 5677664 3444 35667788888888888654331 11 1 122 777774 44544432 45678999
Q ss_pred eeeecCCCCCccC-CCC-------CccCccccccccccccCCCC-ccccccccccCCccchhccccccccCCCccEEeec
Q 045006 66 VLNLHGSSNLHRL-PDE-------HSIPNKNLNYSERLQSRPKL-PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLS 136 (167)
Q Consensus 66 ~L~l~~c~~l~~l-p~~-------~~L~~l~l~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~ 136 (167)
+|++++|. ++.+ |.. .+|+.|+++++. ++.+|.. +++|+.|+++++ +++.++. . ...+.++.++++
T Consensus 228 ~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~-~-~~l~~L~~L~L~ 302 (310)
T 4glp_A 228 SLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ-P-DELPEVDNLTLD 302 (310)
T ss_dssp SEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC-T-TSCCCCSCEECS
T ss_pred EEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch-h-hhCCCccEEECc
Confidence 99999864 4443 432 278888887764 6688764 569999999986 4666522 1 223568888887
Q ss_pred CCC
Q 045006 137 GDF 139 (167)
Q Consensus 137 ~C~ 139 (167)
+.+
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 754
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=3.3e-07 Score=70.75 Aligned_cols=88 Identities=23% Similarity=0.133 Sum_probs=65.7
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccC-CccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSL-PSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c 72 (167)
++.++.+.++.+|. +..+++|++|++++++.++.+|. .+. |+++++ .+..+ |..+.++++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-
Confidence 45555446889999 99999999999997567877774 333 999996 45555 45678999999999998
Q ss_pred CCCccCCCCC----ccCccccccc
Q 045006 73 SNLHRLPDEH----SIPNKNLNYS 92 (167)
Q Consensus 73 ~~l~~lp~~~----~L~~l~l~~c 92 (167)
+.+..+|... .|+.|++.++
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CccceeCHHHcccCCceEEEeeCC
Confidence 5777777653 4666666553
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.52 E-value=2.7e-07 Score=74.15 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=34.9
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 72 (167)
|++++| .++.++. +..+++|++|++++|. +..++. .+. |++++| .+..+|. +..+++|++|++++|
T Consensus 226 L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 226 LSLNGN-QLKDIGT-LASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN 297 (466)
T ss_dssp EECCSS-CCCCCGG-GGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS
T ss_pred EECCCC-Ccccchh-hhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC
Confidence 556665 3555543 5666777777777653 333321 111 666653 3344443 555666666666654
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.52 E-value=4.8e-07 Score=64.48 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=64.1
Q ss_pred CEeecCCCCCCccCcc--cCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILKSLPAE--IFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~--~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
+|+++++ .++.+|.. +..+++|++|++++|...+..|..+. |+++++...+..|..+..+++|++|++++
T Consensus 33 ~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 33 ELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp EEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred EEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 3678887 57777763 78999999999999644443355544 99999544444455688999999999999
Q ss_pred CCCCccC-CCCC----ccCcccccccc
Q 045006 72 SSNLHRL-PDEH----SIPNKNLNYSE 93 (167)
Q Consensus 72 c~~l~~l-p~~~----~L~~l~l~~c~ 93 (167)
| .+..+ |... +|+.+++++++
T Consensus 112 N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 112 N-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp S-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred C-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6 45444 4332 67777776654
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.51 E-value=2.2e-07 Score=75.40 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=83.2
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCC-CCCCCCeeeecCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSIC-QLKPLQVLNLHGSS 73 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~ 73 (167)
|++++| .+..+|. ..+++|++|++++|...+..|..++ |++++|...+..|..+. .+++|++|++++|
T Consensus 104 L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 104 LHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN- 179 (487)
T ss_dssp EECCSS-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-
T ss_pred EECcCC-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-
Confidence 455554 3444443 2456788888887644433344333 88888655555566664 6888888888885
Q ss_pred CCccCCCC---CccCccccccccccccCCCC---ccccccccccCCccchhccccccccCCCccEEeecCCCCC
Q 045006 74 NLHRLPDE---HSIPNKNLNYSERLQSRPKL---PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDFKL 141 (167)
Q Consensus 74 ~l~~lp~~---~~L~~l~l~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~~l 141 (167)
.+..+|.. .+|+.|+++++. ++.+|.. +++|+.|+++++ .++.++... ...+.++.+++++++-.
T Consensus 180 ~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l-~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL-RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC-CCCTTCCEEECTTCCBC
T ss_pred ccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhh-ccCCCCCEEEcCCCCCc
Confidence 45554433 277778887764 5566543 457888888885 466554332 22346888999988755
No 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.51 E-value=6.5e-07 Score=62.95 Aligned_cols=85 Identities=24% Similarity=0.333 Sum_probs=51.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 72 (167)
++++++ .++.+|..+. ++|++|++++| .+..+ |..+. |++++ +.+..+|.. +.++++|++|++++
T Consensus 17 l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~- 90 (174)
T 2r9u_A 17 VNCQNI-RLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND- 90 (174)
T ss_dssp EECCSS-CCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred EEeCCC-CCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-
Confidence 455554 5777887554 67888888884 44444 33332 77777 356666654 46777777777777
Q ss_pred CCCccCCCCC-----ccCccccccc
Q 045006 73 SNLHRLPDEH-----SIPNKNLNYS 92 (167)
Q Consensus 73 ~~l~~lp~~~-----~L~~l~l~~c 92 (167)
+.++.+|... +|+.++++++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CccceeCHHHhccccCCCEEEeCCC
Confidence 3555555431 4445555443
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=1.5e-07 Score=66.00 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=66.4
Q ss_pred cCCCCCCCEEeccCCCCCccCCCC------ce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCCC-----cc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPES------RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDEH-----SI 84 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~------~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~-----~L 84 (167)
+.++.+|++|++++| .+..+|.. +. |++++| .++.+ ..++.+++|++|++++| .+..+|... +|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 445566777777764 44455421 12 677764 44455 45677777777777774 555665432 66
Q ss_pred CccccccccccccCCC-----CccccccccccCCccchhcccc---ccccCCCccEEeecCCC
Q 045006 85 PNKNLNYSERLQSRPK-----LPSNLEWLLAHRCTALESGLIF---SISYESPLRHFDLSGDF 139 (167)
Q Consensus 85 ~~l~l~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~~~---~~~~~~~l~~l~~~~C~ 139 (167)
+.|+++++. ++.+|. .+++|+.|++++++ ++.++.. .....+.++.++++++.
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666776653 455554 24567777777763 4443221 11223456777776664
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.50 E-value=4.1e-07 Score=75.87 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=86.1
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCC-----ce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPES-----RV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~-----~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|++++| .+..+|+ +..+++|+.|++++| .+..+|.- +. |++++| .+..+| .+..+++|+.|++++| .+
T Consensus 70 L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N-~l 143 (605)
T 1m9s_A 70 LFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN-KI 143 (605)
T ss_dssp EECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS-CC
T ss_pred EEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC-cc
Confidence 778877 4777777 888999999999996 56666531 12 899885 455665 5788899999999986 45
Q ss_pred ccCCC---CCccCccccccccccccCCCC--ccccccccccCCccchhccccccccCCCccEEeecCCC
Q 045006 76 HRLPD---EHSIPNKNLNYSERLQSRPKL--PSNLEWLLAHRCTALESGLIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 76 ~~lp~---~~~L~~l~l~~c~~l~~l~~~--~~~L~~L~l~~c~~L~~~~~~~~~~~~~l~~l~~~~C~ 139 (167)
..++. -.+|+.|++++|. +..++.. +++|+.|++++| .++.+.. . ...+.|+.|++++|+
T Consensus 144 ~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~i~~l~~-l-~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 144 TDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA-L-AGLKNLDVLELFSQE 208 (605)
T ss_dssp CCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG-G-TTCTTCSEEECCSEE
T ss_pred CCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCC-CCCCChH-H-ccCCCCCEEEccCCc
Confidence 54432 2378888887764 4444332 567888888876 4555421 1 123467777777764
No 119
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.49 E-value=9.2e-08 Score=73.25 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=62.9
Q ss_pred EeecCCCCCCccC-cccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCC
Q 045006 2 LNLGGCEILKSLP-AEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSN 74 (167)
Q Consensus 2 L~l~~c~~l~~lp-~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 74 (167)
|++++| .++.++ ..+..+++|++|++++|. +..++. .+. |++++| .+..+|. .++|++|++++| .
T Consensus 39 L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~~n-~ 110 (317)
T 3o53_A 39 LDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-N 110 (317)
T ss_dssp EECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSS-C
T ss_pred EECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCC-ccccccC----CCCcCEEECCCC-c
Confidence 455554 344443 345566666666666643 222211 111 555553 3333332 255666666653 3
Q ss_pred CccCCCC--CccCccccccccccccCCC----CccccccccccCCccchhc-cccccccCCCccEEeecCCC
Q 045006 75 LHRLPDE--HSIPNKNLNYSERLQSRPK----LPSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 75 l~~lp~~--~~L~~l~l~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~ 139 (167)
+..++.. .+|+.|+++++. ++.++. .+++|+.|+++++ .++.+ +.........++.|++++|.
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCCcCccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc
Confidence 3333222 155666665543 333322 1457777788775 35554 22222223568888888774
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.4e-07 Score=66.73 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCCCCCCCeeeecCCCCCccCCCCCccCccccccccccccCCC---CccccccccccCCccchhc-cccccccCCCccEE
Q 045006 58 ICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLNYSERLQSRPK---LPSNLEWLLAHRCTALESG-LIFSISYESPLRHF 133 (167)
Q Consensus 58 l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l 133 (167)
+..+++|++|++++|..+++- .++.+.. ..++|+.|++++|+++++. +..... .+.|+.|
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~---------------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~~L~~L 144 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDG---------------CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYL 144 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHH---------------HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CTTCCEE
T ss_pred hcCCCCCCEEEeCCCCccCHH---------------HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CCCCCEE
Confidence 456788999999988766432 1222222 2357999999999999998 444433 4789999
Q ss_pred eecCCCCCCHHH
Q 045006 134 DLSGDFKLDRNE 145 (167)
Q Consensus 134 ~~~~C~~l~~~~ 145 (167)
++++|+.+++..
T Consensus 145 ~L~~c~~Itd~g 156 (176)
T 3e4g_A 145 FLSDLPGVKEKE 156 (176)
T ss_dssp EEESCTTCCCHH
T ss_pred ECCCCCCCCchH
Confidence 999999999865
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.42 E-value=1.7e-06 Score=60.45 Aligned_cols=87 Identities=31% Similarity=0.392 Sum_probs=63.4
Q ss_pred EeecCCCCCCccCcc-cCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeecC
Q 045006 2 LNLGGCEILKSLPAE-IFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLHG 71 (167)
Q Consensus 2 L~l~~c~~l~~lp~~-~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 71 (167)
|+++++ .++.+|.. +..+++|++|++++| .++.+|... . |+++++ .++.+|. .+..+++|++|++++
T Consensus 33 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 33 LELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcC
Confidence 678886 47777764 588999999999995 667776542 2 999995 5666665 468899999999999
Q ss_pred CCCCccCCCCC-----ccCccccccc
Q 045006 72 SSNLHRLPDEH-----SIPNKNLNYS 92 (167)
Q Consensus 72 c~~l~~lp~~~-----~L~~l~l~~c 92 (167)
| .++.+|... +|+.++++++
T Consensus 110 N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 110 N-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cceEeCHHHhcCCcccCEEEecCC
Confidence 5 666776542 4555555554
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.40 E-value=2.3e-06 Score=59.78 Aligned_cols=84 Identities=24% Similarity=0.282 Sum_probs=50.5
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccC-CCCce-------EEecCCCCCccCCcc-CCCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRL-PESRV-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~l-p~~~~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 72 (167)
++++++ .++.+|..+. ++|++|++++| .+..+ |..+. |+++++ .+..+|.. +..+++|++|++++|
T Consensus 14 l~~s~n-~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 14 VDCSGK-SLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EECTTS-CCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCC-CcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 566664 5777886553 67888888884 45544 33332 777773 45566553 467777777777773
Q ss_pred CCCccCCCCC-----ccCcccccc
Q 045006 73 SNLHRLPDEH-----SIPNKNLNY 91 (167)
Q Consensus 73 ~~l~~lp~~~-----~L~~l~l~~ 91 (167)
.++.+|... +|+.+++++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCS
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCC
Confidence 555555431 444455544
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=1.5e-06 Score=69.81 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=57.0
Q ss_pred EeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCC-----Cce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCC
Q 045006 2 LNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPE-----SRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNL 75 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~-----~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 75 (167)
|++++|. +..+++ ++.+++|++|++++| .+..++. .+. |++++| .+..++. +..+++|++|++++| .+
T Consensus 204 L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l 277 (466)
T 1o6v_A 204 LIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QI 277 (466)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CC
T ss_pred EEecCCc-cccccc-ccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCC-cc
Confidence 5666653 455544 666778888888875 3444432 112 777775 3444443 667778888888775 33
Q ss_pred ccCCC---CCccCccccccccccccCCC--CccccccccccCC
Q 045006 76 HRLPD---EHSIPNKNLNYSERLQSRPK--LPSNLEWLLAHRC 113 (167)
Q Consensus 76 ~~lp~---~~~L~~l~l~~c~~l~~l~~--~~~~L~~L~l~~c 113 (167)
..++. -.+|+.|+++++. ++.++. .+++|+.|++++|
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSS
T ss_pred CccccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCC
Confidence 33322 1255566665543 333322 1344555555544
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.38 E-value=5.3e-07 Score=61.31 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCCCCEEeccCCCCC-ccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc-CCCC----CccC
Q 045006 19 LLELLKKLNFSGCSKL-KRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR-LPDE----HSIP 85 (167)
Q Consensus 19 ~l~~L~~L~ls~c~~l-~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~----~~L~ 85 (167)
..++|+.|++++|... +.+|..+. |++++| .+..+ ..++.+++|++|++++|. +.. +|.. .+|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence 3467999999997533 36665443 777775 45555 567777888888887753 333 4332 2556
Q ss_pred ccccccccccccCC--C---CccccccccccCCccchhc
Q 045006 86 NKNLNYSERLQSRP--K---LPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 86 ~l~l~~c~~l~~l~--~---~~~~L~~L~l~~c~~L~~~ 119 (167)
.++++++. ++.++ . .+++|+.|+++++ .++.+
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 128 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNL 128 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGS
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccch
Confidence 66665554 33332 1 1345666666665 34444
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=8.8e-07 Score=73.34 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=61.4
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccC--CccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSL--PSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~l--p~~l~~l~~L~~L~l~~ 71 (167)
+|++++| .++.+|..++.+++|++|++++| .++.+| .++ |++++| .+..+ |..++.+++|+.|++++
T Consensus 467 ~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 467 HLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp EEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred EeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC
Confidence 3788887 57899999999999999999995 666788 444 999995 55666 89999999999999999
Q ss_pred CCCCccCCC
Q 045006 72 SSNLHRLPD 80 (167)
Q Consensus 72 c~~l~~lp~ 80 (167)
| .+..+|.
T Consensus 543 N-~l~~~~~ 550 (567)
T 1dce_A 543 N-SLCQEEG 550 (567)
T ss_dssp S-GGGGSSS
T ss_pred C-cCCCCcc
Confidence 5 5655554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.30 E-value=8.2e-07 Score=62.21 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=77.1
Q ss_pred EeecCCCCCCccCcccCCCC-CCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccC-CCCCCCCeeeecCC
Q 045006 2 LNLGGCEILKSLPAEIFLLE-LLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSI-CQLKPLQVLNLHGS 72 (167)
Q Consensus 2 L~l~~c~~l~~lp~~~~~l~-~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c 72 (167)
|++++| .++.+|. +..+. +|++|++++| .++.++ .+. |++++| .+..+|..+ ..+++|++|++++|
T Consensus 24 L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~-~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 24 LDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred EEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCccc-ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence 678887 5778876 55555 9999999996 565553 332 999985 667777655 78999999999995
Q ss_pred CCCccCCC--C----CccCccccccccccccCCCC-------ccccccccccCCc
Q 045006 73 SNLHRLPD--E----HSIPNKNLNYSERLQSRPKL-------PSNLEWLLAHRCT 114 (167)
Q Consensus 73 ~~l~~lp~--~----~~L~~l~l~~c~~l~~l~~~-------~~~L~~L~l~~c~ 114 (167)
.++.+|. . .+|+.+++++++ +..+|.. +++|+.|+++++.
T Consensus 99 -~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 99 -SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp -CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred -cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5676665 2 277888888765 5566653 4678888888764
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.28 E-value=2.9e-06 Score=59.58 Aligned_cols=74 Identities=27% Similarity=0.285 Sum_probs=57.9
Q ss_pred CEeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCcc-CCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPSS-ICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~~-l~~l~~L~~L~l~ 70 (167)
+|+++++. ++.+ |..+..+++|++|++++| .++.+|... . |++++ +.+..+|.. +..+++|++|+++
T Consensus 37 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 37 RLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECC
T ss_pred EEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeC
Confidence 37888874 6666 557889999999999995 777787653 2 99998 567778775 8899999999999
Q ss_pred CCCCCccC
Q 045006 71 GSSNLHRL 78 (167)
Q Consensus 71 ~c~~l~~l 78 (167)
+| .+...
T Consensus 114 ~N-~~~c~ 120 (174)
T 2r9u_A 114 NN-PWDCE 120 (174)
T ss_dssp SS-CBCTT
T ss_pred CC-Ccccc
Confidence 95 44433
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.13 E-value=1e-05 Score=56.45 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=55.5
Q ss_pred CEeecCCCCCCcc-CcccCCCCCCCEEeccCCCCCccCCCCc-e-------EEecCCCCCccCCc-cCCCCCCCCeeeec
Q 045006 1 MLNLGGCEILKSL-PAEIFLLELLKKLNFSGCSKLKRLPESR-V-------LIRCGCKRLKSLPS-SICQLKPLQVLNLH 70 (167)
Q Consensus 1 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~ls~c~~l~~lp~~~-~-------L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 70 (167)
+|+++++ .++.+ |..+..+++|++|++++| .+..+|... . |++++ +.+..+|. .+..+++|++|+++
T Consensus 34 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 34 VLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeC
Confidence 3788887 57777 556889999999999995 677777643 2 99999 46777776 58899999999999
Q ss_pred CCC
Q 045006 71 GSS 73 (167)
Q Consensus 71 ~c~ 73 (167)
+|.
T Consensus 111 ~N~ 113 (170)
T 3g39_A 111 NNP 113 (170)
T ss_dssp SSC
T ss_pred CCC
Confidence 953
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.08 E-value=1.3e-06 Score=67.98 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=17.5
Q ss_pred ccccccccCCccchhc-cc----cccccCCCccEEeecCCC
Q 045006 104 NLEWLLAHRCTALESG-LI----FSISYESPLRHFDLSGDF 139 (167)
Q Consensus 104 ~L~~L~l~~c~~L~~~-~~----~~~~~~~~l~~l~~~~C~ 139 (167)
+|+.|++++| ++++. .. ........++.|++++|.
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 6666666665 34433 11 111111357777777765
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.03 E-value=3.3e-07 Score=75.25 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=9.5
Q ss_pred CCccEEeecCCCCCCHH
Q 045006 128 SPLRHFDLSGDFKLDRN 144 (167)
Q Consensus 128 ~~l~~l~~~~C~~l~~~ 144 (167)
+.++.|++++|. ++..
T Consensus 289 ~~L~~L~L~~~~-l~~~ 304 (594)
T 2p1m_B 289 SRLTTLNLSYAT-VQSY 304 (594)
T ss_dssp TTCCEEECTTCC-CCHH
T ss_pred CCCCEEEccCCC-CCHH
Confidence 456666666666 5543
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.96 E-value=1e-07 Score=68.20 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCCCCccCCCC-
Q 045006 10 LKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRLPDE- 81 (167)
Q Consensus 10 l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~- 81 (167)
++.+|..+..+++|++|++++| .++.+| .+. |++++| .+..+|..+..+++|++|++++| .+..+|.-
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLSGIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCCccc
Confidence 4555557788888888888885 455566 333 666663 44566665555667777777764 44444311
Q ss_pred --CccCccccccccccccCCC-----CccccccccccCC
Q 045006 82 --HSIPNKNLNYSERLQSRPK-----LPSNLEWLLAHRC 113 (167)
Q Consensus 82 --~~L~~l~l~~c~~l~~l~~-----~~~~L~~L~l~~c 113 (167)
.+|+.|+++++. ++.++. .+++|+.|+++++
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 155555555543 332221 2345566666554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.94 E-value=2.7e-06 Score=66.21 Aligned_cols=35 Identities=11% Similarity=-0.064 Sum_probs=18.3
Q ss_pred cccccccccCCccchh-----ccccccccCCCccEEeecCC
Q 045006 103 SNLEWLLAHRCTALES-----GLIFSISYESPLRHFDLSGD 138 (167)
Q Consensus 103 ~~L~~L~l~~c~~L~~-----~~~~~~~~~~~l~~l~~~~C 138 (167)
.+|+.|+++++. +.+ +..........++.|++++|
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 466677776653 444 22222222235677777776
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.92 E-value=2e-07 Score=76.62 Aligned_cols=12 Identities=33% Similarity=0.105 Sum_probs=6.4
Q ss_pred cccccccccCCc
Q 045006 103 SNLEWLLAHRCT 114 (167)
Q Consensus 103 ~~L~~L~l~~c~ 114 (167)
++|+.|++++|.
T Consensus 289 ~~L~~L~L~~~~ 300 (594)
T 2p1m_B 289 SRLTTLNLSYAT 300 (594)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEccCCC
Confidence 455555555544
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.88 E-value=1.4e-06 Score=68.22 Aligned_cols=14 Identities=14% Similarity=0.123 Sum_probs=6.6
Q ss_pred CCCCCCCEEeccCC
Q 045006 18 FLLELLKKLNFSGC 31 (167)
Q Consensus 18 ~~l~~L~~L~ls~c 31 (167)
..+++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 91 LKCPKLHTVRLSDN 104 (386)
T ss_dssp TTCTTCCEEECCSC
T ss_pred hhCCcccEEECCCC
Confidence 34444555555443
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.86 E-value=4.4e-06 Score=68.59 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=11.9
Q ss_pred cCcccCCCCCCCEEeccCCC
Q 045006 13 LPAEIFLLELLKKLNFSGCS 32 (167)
Q Consensus 13 lp~~~~~l~~L~~L~ls~c~ 32 (167)
++..+.++++|++|++++|.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHhhCCCCcEEeccCcc
Confidence 33334556677777777653
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.83 E-value=4.6e-05 Score=58.64 Aligned_cols=71 Identities=24% Similarity=0.161 Sum_probs=54.2
Q ss_pred CEeecCCCCCCccCc-ccCCCCCCCEEeccCCCCCccCCC-Cce-------EEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 1 MLNLGGCEILKSLPA-EIFLLELLKKLNFSGCSKLKRLPE-SRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~ls~c~~l~~lp~-~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
+|+|++++.++.+|+ .++.+++|++|++++| .+..+|. .+. |+|++ +.+..+|..+....+|+.|++.+
T Consensus 35 ~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 35 ELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp EEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred EEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeC
Confidence 378887557888884 6889999999999996 5666654 333 99999 57778887655444599999998
Q ss_pred CC
Q 045006 72 SS 73 (167)
Q Consensus 72 c~ 73 (167)
|.
T Consensus 113 N~ 114 (347)
T 2ifg_A 113 NP 114 (347)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 137
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.8e-05 Score=55.86 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=27.7
Q ss_pred EEecCCCCCccCC-ccCCCC----CCCCeeeecCCCCCcc-----CCCCCccCccccccccccc
Q 045006 43 LIRCGCKRLKSLP-SSICQL----KPLQVLNLHGSSNLHR-----LPDEHSIPNKNLNYSERLQ 96 (167)
Q Consensus 43 L~l~~c~~l~~lp-~~l~~l----~~L~~L~l~~c~~l~~-----lp~~~~L~~l~l~~c~~l~ 96 (167)
|++++|..+++-- ..+..+ ++|++|++++|..+++ +..-.+|+.|++++|+.++
T Consensus 90 L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 90 IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp EEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred EEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 6666665554310 112222 2577777777765543 2222356666666666554
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.74 E-value=1.1e-06 Score=70.08 Aligned_cols=140 Identities=18% Similarity=0.134 Sum_probs=75.6
Q ss_pred EeecCCCCCC-----ccCcccCCCCCCCEEeccCCCCCcc-----C----CC---Cce-EEecCCCCCc----cCCccCC
Q 045006 2 LNLGGCEILK-----SLPAEIFLLELLKKLNFSGCSKLKR-----L----PE---SRV-LIRCGCKRLK----SLPSSIC 59 (167)
Q Consensus 2 L~l~~c~~l~-----~lp~~~~~l~~L~~L~ls~c~~l~~-----l----p~---~~~-L~l~~c~~l~----~lp~~l~ 59 (167)
|++++|. ++ .+|..+..+++|++|++++|. ++. + .. .+. |++++|..-. .++..+.
T Consensus 90 L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 90 LSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167 (461)
T ss_dssp EECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred EEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh
Confidence 5677664 44 456667778888888888864 432 1 11 233 7787763322 2344555
Q ss_pred CCCCCCeeeecCCCCCcc-----CCC-----CCccCcccccccccccc-----CCCC---ccccccccccCCccchhc-c
Q 045006 60 QLKPLQVLNLHGSSNLHR-----LPD-----EHSIPNKNLNYSERLQS-----RPKL---PSNLEWLLAHRCTALESG-L 120 (167)
Q Consensus 60 ~l~~L~~L~l~~c~~l~~-----lp~-----~~~L~~l~l~~c~~l~~-----l~~~---~~~L~~L~l~~c~~L~~~-~ 120 (167)
.+++|++|++++|. ++. +.. ..+|+.|++++|. ++. ++.. .++|+.|+++++ .+.+. .
T Consensus 168 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 244 (461)
T 1z7x_W 168 AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM 244 (461)
T ss_dssp HCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHH
T ss_pred hCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHH
Confidence 66788888888754 322 111 1256777776663 222 2222 356777777766 34433 1
Q ss_pred ----ccccccCCCccEEeecCCCCCCHHHHh
Q 045006 121 ----IFSISYESPLRHFDLSGDFKLDRNEVR 147 (167)
Q Consensus 121 ----~~~~~~~~~l~~l~~~~C~~l~~~~~~ 147 (167)
.........++.|++++| .++.....
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 274 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWEC-GITAKGCG 274 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECcCC-CCCHHHHH
Confidence 111112345667777776 55554433
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.72 E-value=3.4e-06 Score=67.17 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=66.7
Q ss_pred EeecCCCCCC-----ccCcccCCCCCCCEEeccCCCCCcc---------CCC---Cce-EEecCCCCC----ccCCccCC
Q 045006 2 LNLGGCEILK-----SLPAEIFLLELLKKLNFSGCSKLKR---------LPE---SRV-LIRCGCKRL----KSLPSSIC 59 (167)
Q Consensus 2 L~l~~c~~l~-----~lp~~~~~l~~L~~L~ls~c~~l~~---------lp~---~~~-L~l~~c~~l----~~lp~~l~ 59 (167)
|++++|. ++ .+|..+..+++|++|++++|. ++. ++. .+. |++++|..- ..+|..+.
T Consensus 33 L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 33 VRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp EEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred EEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 6677764 44 456667777888899988864 332 221 344 888886433 24677788
Q ss_pred CCCCCCeeeecCCCCCcc-----C----C-CCCccCccccccccccc----cCCCC---ccccccccccCCc
Q 045006 60 QLKPLQVLNLHGSSNLHR-----L----P-DEHSIPNKNLNYSERLQ----SRPKL---PSNLEWLLAHRCT 114 (167)
Q Consensus 60 ~l~~L~~L~l~~c~~l~~-----l----p-~~~~L~~l~l~~c~~l~----~l~~~---~~~L~~L~l~~c~ 114 (167)
.+++|++|++++|. ++. + . ...+|+.|++++|..-. .++.. .++|+.|+++++.
T Consensus 111 ~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 111 TLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp SCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred cCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 88999999998864 432 1 1 11257777777764211 11211 3466666666654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=0.00013 Score=55.84 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=15.6
Q ss_pred CCccCc-ccCCCCCCCEEeccCC
Q 045006 10 LKSLPA-EIFLLELLKKLNFSGC 31 (167)
Q Consensus 10 l~~lp~-~~~~l~~L~~L~ls~c 31 (167)
++.+++ .+..+++|+.++++++
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCS
T ss_pred ccchhHHHhhcCcccceEEcCCC
Confidence 344444 4678899999999874
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.57 E-value=4e-05 Score=62.87 Aligned_cols=69 Identities=17% Similarity=0.008 Sum_probs=37.0
Q ss_pred EeecCCCCCCc----cCcccCCCCCCCEEeccCCCCC----ccCCC------Cce-EEecCCCCCccCCccCCCCCCCCe
Q 045006 2 LNLGGCEILKS----LPAEIFLLELLKKLNFSGCSKL----KRLPE------SRV-LIRCGCKRLKSLPSSICQLKPLQV 66 (167)
Q Consensus 2 L~l~~c~~l~~----lp~~~~~l~~L~~L~ls~c~~l----~~lp~------~~~-L~l~~c~~l~~lp~~l~~l~~L~~ 66 (167)
|++++|..... ++.....+++|++|+++++..- ..++. .+. |++++|. +..+|..+.++++|++
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~ 247 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEE 247 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCE
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHh
Confidence 67777742111 3333456788999999875432 12221 222 7777753 3345555555555555
Q ss_pred eeecC
Q 045006 67 LNLHG 71 (167)
Q Consensus 67 L~l~~ 71 (167)
|++++
T Consensus 248 L~l~~ 252 (592)
T 3ogk_B 248 FCGGS 252 (592)
T ss_dssp EEECB
T ss_pred hcccc
Confidence 55543
No 142
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.46 E-value=5.7e-06 Score=64.75 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=87.5
Q ss_pred EeecCCCCCC-----ccCcccCCC---------CCCCEEeccCCCCC-ccCC---C------Cce-EEecCCCCCc----
Q 045006 2 LNLGGCEILK-----SLPAEIFLL---------ELLKKLNFSGCSKL-KRLP---E------SRV-LIRCGCKRLK---- 52 (167)
Q Consensus 2 L~l~~c~~l~-----~lp~~~~~l---------~~L~~L~ls~c~~l-~~lp---~------~~~-L~l~~c~~l~---- 52 (167)
|++++|. ++ .++..+..+ ++|++|++++|... ..+| . .+. |++++| .++
T Consensus 127 L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~ 204 (386)
T 2ca6_A 127 LYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGI 204 (386)
T ss_dssp EECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHH
T ss_pred EECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHH
Confidence 6777774 43 355555555 78999999986533 2333 1 223 888886 344
Q ss_pred --cCCccCCCCCCCCeeeecCCCCC----ccCC----CCCccCcccccccccccc----CCCC-----ccccccccccCC
Q 045006 53 --SLPSSICQLKPLQVLNLHGSSNL----HRLP----DEHSIPNKNLNYSERLQS----RPKL-----PSNLEWLLAHRC 113 (167)
Q Consensus 53 --~lp~~l~~l~~L~~L~l~~c~~l----~~lp----~~~~L~~l~l~~c~~l~~----l~~~-----~~~L~~L~l~~c 113 (167)
.+|..+..+++|++|++++|..- ..+| ...+|+.|++++|..-.. ++.. .++|+.|++++|
T Consensus 205 ~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 23446778899999999986431 3333 223788888888763211 2322 578999999987
Q ss_pred ccchh-----ccccccccCCCccEEeecCCCCCCHH
Q 045006 114 TALES-----GLIFSISYESPLRHFDLSGDFKLDRN 144 (167)
Q Consensus 114 ~~L~~-----~~~~~~~~~~~l~~l~~~~C~~l~~~ 144 (167)
. ++. ++.......+.++.|++++|+--...
T Consensus 285 ~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 285 E-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp C-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred c-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4 555 33333233357899999998754433
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.35 E-value=1.9e-06 Score=61.50 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=65.6
Q ss_pred CEeecCCCCCCccCcccCCCCCCCEEeccCCCCCccCCCCce-------EEecCCCCCccCCccCCCCCCCCeeeecCCC
Q 045006 1 MLNLGGCEILKSLPAEIFLLELLKKLNFSGCSKLKRLPESRV-------LIRCGCKRLKSLPSSICQLKPLQVLNLHGSS 73 (167)
Q Consensus 1 ~L~l~~c~~l~~lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~-------L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 73 (167)
+|++++| .++.+| .+..+++|++|++++| .++.+|..+. |++++| .+..+| .+..+++|++|++++|
T Consensus 52 ~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N- 125 (198)
T 1ds9_A 52 HLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN- 125 (198)
T ss_dssp EEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-
T ss_pred EEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-
Confidence 3677776 477788 6889999999999995 5678886543 999985 666677 5778899999999985
Q ss_pred CCccCCC------CCccCccccccccc
Q 045006 74 NLHRLPD------EHSIPNKNLNYSER 94 (167)
Q Consensus 74 ~l~~lp~------~~~L~~l~l~~c~~ 94 (167)
.+..++. -.+|+.+++++++.
T Consensus 126 ~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 126 KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4544332 23677788877653
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.57 E-value=0.0048 Score=47.01 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=49.6
Q ss_pred EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCCCCCccCccccccccccc-c--CCCCccccccccccCCccchh
Q 045006 43 LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLNYSERLQ-S--RPKLPSNLEWLLAHRCTALES 118 (167)
Q Consensus 43 L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~~c~~l~-~--l~~~~~~L~~L~l~~c~~L~~ 118 (167)
+++++ +.+..+|. .+.++.+|+.+++.++ +..++... +.+|..|+ . +|.....+..=-..+|++|+.
T Consensus 231 l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a------F~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 231 LDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV------FSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp EECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTT------TTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred EECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHH------hhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence 55554 34556655 5677888888888773 66666553 56666665 2 333333333334556777776
Q ss_pred c-cccccccCCCccEEeecCCCCCCHH
Q 045006 119 G-LIFSISYESPLRHFDLSGDFKLDRN 144 (167)
Q Consensus 119 ~-~~~~~~~~~~l~~l~~~~C~~l~~~ 144 (167)
+ +... . ...+..-.|.+|++|+..
T Consensus 302 l~l~~n-~-i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGD-K-ITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSS-C-CCEECTTTTCTTCCCCEE
T ss_pred EEeCCC-c-cCccchhhhcCCcchhhh
Confidence 6 2111 0 011222356777777643
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.48 E-value=0.00021 Score=55.98 Aligned_cols=141 Identities=18% Similarity=0.124 Sum_probs=75.2
Q ss_pred EeecCCCCCCcc-----CcccC-CCCCCCEEeccCCCCCcc-----CCC---Cce-EEecCCCCCccC-----CccC-CC
Q 045006 2 LNLGGCEILKSL-----PAEIF-LLELLKKLNFSGCSKLKR-----LPE---SRV-LIRCGCKRLKSL-----PSSI-CQ 60 (167)
Q Consensus 2 L~l~~c~~l~~l-----p~~~~-~l~~L~~L~ls~c~~l~~-----lp~---~~~-L~l~~c~~l~~l-----p~~l-~~ 60 (167)
|++++|. ++.. ...+. ..++|++|++++|. ++. +.. .+. |++++| .++.. ...+ ..
T Consensus 77 L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 77 LNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHD 153 (372)
T ss_dssp EECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHST
T ss_pred EEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhc
Confidence 5677764 4432 22222 33678888888864 332 111 122 888886 33321 1112 24
Q ss_pred CCCCCeeeecCCCCCcc-----C----CCCCccCcccccccccccc-----CC---CCccccccccccCCccchhc----
Q 045006 61 LKPLQVLNLHGSSNLHR-----L----PDEHSIPNKNLNYSERLQS-----RP---KLPSNLEWLLAHRCTALESG---- 119 (167)
Q Consensus 61 l~~L~~L~l~~c~~l~~-----l----p~~~~L~~l~l~~c~~l~~-----l~---~~~~~L~~L~l~~c~~L~~~---- 119 (167)
.++|++|++++|. ++. + ....+|+.|++++|. ++. ++ ...++|+.|++++| .+++.
T Consensus 154 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~ 230 (372)
T 3un9_A 154 QCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALA 230 (372)
T ss_dssp TCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred CCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence 5778888888863 432 2 122367888887765 321 11 12357888888887 35543
Q ss_pred cccccccCCCccEEeecCCCCCCHHHHhcH
Q 045006 120 LIFSISYESPLRHFDLSGDFKLDRNEVRGI 149 (167)
Q Consensus 120 ~~~~~~~~~~l~~l~~~~C~~l~~~~~~~~ 149 (167)
+.......+.++.|++++|. +++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE-LSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS-CCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCC-CCHHHHHHH
Confidence 11111112457888888875 665554444
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.09 E-value=0.014 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=14.0
Q ss_pred ccCCCCCCCEEeccCCCCCccCCC
Q 045006 16 EIFLLELLKKLNFSGCSKLKRLPE 39 (167)
Q Consensus 16 ~~~~l~~L~~L~ls~c~~l~~lp~ 39 (167)
.+..+++|+.+++.+ +.+..+|.
T Consensus 175 aF~~c~~L~~l~l~~-n~l~~I~~ 197 (401)
T 4fdw_A 175 IFYYCYNLKKADLSK-TKITKLPA 197 (401)
T ss_dssp TTTTCTTCCEEECTT-SCCSEECT
T ss_pred HhhCcccCCeeecCC-CcceEech
Confidence 355677777777765 34555443
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.28 E-value=0.009 Score=46.62 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=23.0
Q ss_pred ccccccccccCCccchhc-----cccccccCCCccEEeecCCCCCCHHHHhcHH
Q 045006 102 PSNLEWLLAHRCTALESG-----LIFSISYESPLRHFDLSGDFKLDRNEVRGIV 150 (167)
Q Consensus 102 ~~~L~~L~l~~c~~L~~~-----~~~~~~~~~~l~~l~~~~C~~l~~~~~~~~~ 150 (167)
+++|+.|+++.+ .+.+. .... ...+.|+.|++++|. +++...+.+.
T Consensus 278 ~~~L~~LdLs~n-~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 278 LPQLETMDISAG-VLTDEGARLLLDHV-DKIKHLKFINMKYNY-LSDEMKKELQ 328 (362)
T ss_dssp GGGCSEEECCSS-CCBHHHHHHHHTTH-HHHTTCSEEECCSBB-CCHHHHHHHH
T ss_pred CCCCCEEECCCC-CCChHHHHHHHhhc-ccCCcceEEECCCCc-CCHHHHHHHH
Confidence 456666666543 35442 1111 112356777776663 6655544443
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.18 E-value=0.045 Score=43.12 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=10.1
Q ss_pred cCCCCCCCCeeeecC
Q 045006 57 SICQLKPLQVLNLHG 71 (167)
Q Consensus 57 ~l~~l~~L~~L~l~~ 71 (167)
.+.++++|+.+++.+
T Consensus 266 aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 266 AFYYCPELAEVTTYG 280 (401)
T ss_dssp TTTTCTTCCEEEEES
T ss_pred HhhCCCCCCEEEeCC
Confidence 455667777777765
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.68 E-value=0.11 Score=40.00 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=45.8
Q ss_pred cCCCCCCCEEeccCCCCCccCCCCc-------e-EEecCCCCCccCCc-cCCCCCCCCeeeecCCCCCccCCCCCccCcc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPESR-------V-LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEHSIPNK 87 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~~-------~-L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l 87 (167)
+..+..|+.+.+.. .+..++... . +.+.. .+..++. .+.++.+|+.+.+.+ +.++.++..
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~------ 304 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPR------ 304 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTT------
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhh------
Confidence 34556666666643 233333211 1 33432 3444443 455677888888765 345555544
Q ss_pred ccccccccccCCCCccccccc---cccCCccchhc
Q 045006 88 NLNYSERLQSRPKLPSNLEWL---LAHRCTALESG 119 (167)
Q Consensus 88 ~l~~c~~l~~l~~~~~~L~~L---~l~~c~~L~~~ 119 (167)
-+.+|.+|+.+ ..+.+++.+ -..+|.+|+.+
T Consensus 305 aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 305 VFMDCVKLSSV-TLPTALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TTTTCTTCCEE-ECCTTCCEECTTTTTTCTTCCCC
T ss_pred hhcCCCCCCEE-EcCccccEEHHHHhhCCCCCCEE
Confidence 25666666544 122233333 34566666666
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.66 E-value=0.012 Score=41.13 Aligned_cols=108 Identities=11% Similarity=0.020 Sum_probs=51.4
Q ss_pred cCCCCCCCEEeccCCCCCccCCCCceEEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc---------CCCCCccCcc
Q 045006 17 IFLLELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR---------LPDEHSIPNK 87 (167)
Q Consensus 17 ~~~l~~L~~L~ls~c~~l~~lp~~~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~---------lp~~~~L~~l 87 (167)
+...++|++|++++|..++. .....+...+...++|++|++++|. ++. +.....|+.|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~------------~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV------------PTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH------------HHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred HhcCCCCCEEEecCCCCCCH------------HHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEE
Confidence 45567888888888634543 1111222233344555555555542 221 1111245555
Q ss_pred cccccccc----ccCC---CCccccccccc--cCCccchhc-----cccccccCCCccEEeecCCC
Q 045006 88 NLNYSERL----QSRP---KLPSNLEWLLA--HRCTALESG-----LIFSISYESPLRHFDLSGDF 139 (167)
Q Consensus 88 ~l~~c~~l----~~l~---~~~~~L~~L~l--~~c~~L~~~-----~~~~~~~~~~l~~l~~~~C~ 139 (167)
+++++.-- ..+. ....+|+.|++ +++ .+.+. ..... ....++.|++++|.
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE-KNTTLLKFGYHFTQ 162 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH-HCSSCCEEECCCSS
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH-hCCCcCEEeccCCC
Confidence 55443210 1111 12346888888 433 34443 11111 12458899998874
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.40 E-value=0.016 Score=43.37 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=20.0
Q ss_pred CCCCCCEEeccCCCCCccCCCCceEEecCCCCCccCCccCCCCCCCCeeeecC
Q 045006 19 LLELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLPSSICQLKPLQVLNLHG 71 (167)
Q Consensus 19 ~l~~L~~L~ls~c~~l~~lp~~~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 71 (167)
++++|++|++++| .+..++ .+|..+..+++|+.|++++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~--------------~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLD--------------DMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCG--------------GGTTHHHHSTTCCEEECTT
T ss_pred hCCCCCEEECCCC-CCCCCc--------------cchhHHhhCCCCCEEECCC
Confidence 4566777777774 333221 2333344555666666655
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.07 E-value=0.12 Score=39.78 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.9
Q ss_pred CCCCCCCeeeec
Q 045006 59 CQLKPLQVLNLH 70 (167)
Q Consensus 59 ~~l~~L~~L~l~ 70 (167)
.++.+|+.+.+.
T Consensus 260 ~~~~~l~~i~l~ 271 (379)
T 4h09_A 260 QNCTALKTLNFY 271 (379)
T ss_dssp TTCTTCCEEEEC
T ss_pred ceeehhcccccc
Confidence 344455555553
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.88 E-value=0.08 Score=41.22 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=46.5
Q ss_pred CccCCc-cCCCCCCCCeeeecCCCCCccCCCCCccCccccccccccccCCCCccccccc---cccCCccchhc-cccccc
Q 045006 51 LKSLPS-SICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLNYSERLQSRPKLPSNLEWL---LAHRCTALESG-LIFSIS 125 (167)
Q Consensus 51 l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~~c~~l~~l~~~~~~L~~L---~l~~c~~L~~~-~~~~~~ 125 (167)
++.+++ .+.++.+|+.+++.+ .++.++.. -+.+|..|+.+ ..+.+++.+ -..+|.+|+.+ ++...
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~------aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~L~~i~lp~~~- 377 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY--LVEEIGKR------SFRGCTSLSNI-NFPLSLRKIGANAFQGCINLKKVELPKRL- 377 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT--TCCEECTT------TTTTCTTCCEE-CCCTTCCEECTTTBTTCTTCCEEEEEGGG-
T ss_pred cceechhhhcCCCCCCEEEeCC--cccEEhHH------hccCCCCCCEE-EECccccEehHHHhhCCCCCCEEEECCCC-
Confidence 444433 456677788887754 35555544 37788888765 223344444 46788888888 32221
Q ss_pred cCCCccEEeecCCCCCCH
Q 045006 126 YESPLRHFDLSGDFKLDR 143 (167)
Q Consensus 126 ~~~~l~~l~~~~C~~l~~ 143 (167)
.... ..|.+|.+|+.
T Consensus 378 --~~~~-~~F~~c~~L~~ 392 (394)
T 4fs7_A 378 --EQYR-YDFEDTTKFKW 392 (394)
T ss_dssp --GGGG-GGBCTTCEEEE
T ss_pred --EEhh-heecCCCCCcE
Confidence 1122 36888887753
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.70 E-value=0.031 Score=41.80 Aligned_cols=60 Identities=33% Similarity=0.338 Sum_probs=38.9
Q ss_pred EeecCCCCCCc---cCcccCCCCCCCEEeccCCCCCccCCCCceEEecCCCCCccCCccCCCCCCCCeeeecCCCCCccC
Q 045006 2 LNLGGCEILKS---LPAEIFLLELLKKLNFSGCSKLKRLPESRVLIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHRL 78 (167)
Q Consensus 2 L~l~~c~~l~~---lp~~~~~l~~L~~L~ls~c~~l~~lp~~~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 78 (167)
|++++|. +.. +|..+..+++|+.|++++| .++.+ ..+. .+..+ +|++|++++|..-+.+
T Consensus 175 L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~--------------~~l~-~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 175 LNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSE--------------RELD-KIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp EECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSG--------------GGGG-GGTTS-CCSEEECTTSTTGGGC
T ss_pred EECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCc--------------hhhh-hcccC-CcceEEccCCcCcccc
Confidence 7888874 554 4455678999999999994 44432 1111 12234 8999999997644455
Q ss_pred C
Q 045006 79 P 79 (167)
Q Consensus 79 p 79 (167)
|
T Consensus 237 ~ 237 (267)
T 3rw6_A 237 R 237 (267)
T ss_dssp S
T ss_pred C
Confidence 5
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.66 E-value=0.23 Score=38.57 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=5.0
Q ss_pred ccCCccchhc
Q 045006 110 AHRCTALESG 119 (167)
Q Consensus 110 l~~c~~L~~~ 119 (167)
..+|.+|+.+
T Consensus 353 F~~C~~L~~i 362 (394)
T 4gt6_A 353 FSNCTALNNI 362 (394)
T ss_dssp GTTCTTCCEE
T ss_pred hhCCCCCCEE
Confidence 3455555554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.49 E-value=0.35 Score=37.50 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=24.0
Q ss_pred CCCCCCCCeeeecCCCCCccCCCCCccCccccccccccccC--CCCccccccccccCCccchhc
Q 045006 58 ICQLKPLQVLNLHGSSNLHRLPDEHSIPNKNLNYSERLQSR--PKLPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 58 l~~l~~L~~L~l~~c~~l~~lp~~~~L~~l~l~~c~~l~~l--~~~~~~L~~L~l~~c~~L~~~ 119 (167)
+.++.+|+.+.+.. .+..++.. -+.+|..|+.+ |.....+..=-..+|.+|+.+
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~------aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPES------VFAGCISLKSIDIPEGITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTT------TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccCCC--cccccCce------eecCCCCcCEEEeCCcccEehHhHhhCCCCCCEE
Confidence 34455555555542 34444433 25555555443 222222222234456666555
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.32 E-value=0.25 Score=32.50 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEecCCCCCccCCc-cCCCCCCCCeeeecCCC
Q 045006 43 LIRCGCKRLKSLPS-SICQLKPLQVLNLHGSS 73 (167)
Q Consensus 43 L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 73 (167)
|+|++ +.+..+|. .+..+++|+.|+|.+|.
T Consensus 36 L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 36 LVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 44443 34455554 34567788899998853
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=90.80 E-value=0.036 Score=43.21 Aligned_cols=88 Identities=22% Similarity=0.144 Sum_probs=55.2
Q ss_pred EeecCCCCCCccC-----ccc-CCCCCCCEEeccCCCCCcc-----CC------CCce-EEecCCCCCcc-----CCccC
Q 045006 2 LNLGGCEILKSLP-----AEI-FLLELLKKLNFSGCSKLKR-----LP------ESRV-LIRCGCKRLKS-----LPSSI 58 (167)
Q Consensus 2 L~l~~c~~l~~lp-----~~~-~~l~~L~~L~ls~c~~l~~-----lp------~~~~-L~l~~c~~l~~-----lp~~l 58 (167)
|++++| .++... ..+ ...++|++|++++|. ++. ++ ..+. |++++|. ++. ++..+
T Consensus 131 L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L 207 (372)
T 3un9_A 131 LGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQL 207 (372)
T ss_dssp EECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHG
T ss_pred hhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHH
Confidence 788887 454332 222 345789999999974 432 21 1233 9999864 443 34556
Q ss_pred CCCCCCCeeeecCCCCCcc-----CC----CCCccCcccccccc
Q 045006 59 CQLKPLQVLNLHGSSNLHR-----LP----DEHSIPNKNLNYSE 93 (167)
Q Consensus 59 ~~l~~L~~L~l~~c~~l~~-----lp----~~~~L~~l~l~~c~ 93 (167)
...++|++|++++| .++. ++ ....|+.|+++++.
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 67789999999996 4442 11 11368888887764
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.37 E-value=0.099 Score=40.69 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=70.2
Q ss_pred ccCCCCCCCEEeccCCCC----C-----ccC------CCCce-EEecCCCCCccCCccCCCCCCCCeeeecCCCCCcc--
Q 045006 16 EIFLLELLKKLNFSGCSK----L-----KRL------PESRV-LIRCGCKRLKSLPSSICQLKPLQVLNLHGSSNLHR-- 77 (167)
Q Consensus 16 ~~~~l~~L~~L~ls~c~~----l-----~~l------p~~~~-L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-- 77 (167)
++..+++|+.|.+.+... + ..+ ++.+. |+++++..+ .+|. + .+++|++|++..|. +..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHH
Confidence 355678899998865311 0 011 12333 888876433 3443 3 37899999998764 221
Q ss_pred ---CC--CCCccCcccccccc-------ccccC----C-CCccccccccccCCccchhccc--cccccCCCccEEeecCC
Q 045006 78 ---LP--DEHSIPNKNLNYSE-------RLQSR----P-KLPSNLEWLLAHRCTALESGLI--FSISYESPLRHFDLSGD 138 (167)
Q Consensus 78 ---lp--~~~~L~~l~l~~c~-------~l~~l----~-~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~l~~l~~~~C 138 (167)
+. .-++|+.|++..+. .++.+ . ..+++|+.|++.+|.--..... ......+.|+.|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~- 288 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA- 288 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-
Confidence 10 11256777664211 12111 1 1367899999988753221110 1011235699999964
Q ss_pred CCCCHHHHhcHH
Q 045006 139 FKLDRNEVRGIV 150 (167)
Q Consensus 139 ~~l~~~~~~~~~ 150 (167)
..+.+...+.+.
T Consensus 289 n~L~d~G~~~L~ 300 (362)
T 2ra8_A 289 GVLTDEGARLLL 300 (362)
T ss_dssp SCCBHHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 568877655543
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=87.15 E-value=0.12 Score=36.02 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=21.6
Q ss_pred EeecCCCCCCc-----cCcccCCCCCCCEEeccCCC
Q 045006 2 LNLGGCEILKS-----LPAEIFLLELLKKLNFSGCS 32 (167)
Q Consensus 2 L~l~~c~~l~~-----lp~~~~~l~~L~~L~ls~c~ 32 (167)
|++++|..++. +...+...++|++|++++|.
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 67777634443 44456667899999999964
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.80 E-value=1.5 Score=28.59 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=26.2
Q ss_pred CCCc--cCCccCCCCCCCCeeeecCCCCCccCCCCC-----ccCcccccc
Q 045006 49 KRLK--SLPSSICQLKPLQVLNLHGSSNLHRLPDEH-----SIPNKNLNY 91 (167)
Q Consensus 49 ~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~~-----~L~~l~l~~ 91 (167)
..++ .+|..+. .+|++|+|++ +.++.+|.+. +|+.+++.+
T Consensus 18 ~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 18 RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 4555 7776542 4799999998 5788888763 444444443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=83.37 E-value=1 Score=34.91 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=31.2
Q ss_pred ccccccccccC--CCCccccccccccCCccchhc-cccccccCCCccEEeecCCCCCCHH
Q 045006 88 NLNYSERLQSR--PKLPSNLEWLLAHRCTALESG-LIFSISYESPLRHFDLSGDFKLDRN 144 (167)
Q Consensus 88 ~l~~c~~l~~l--~~~~~~L~~L~l~~c~~L~~~-~~~~~~~~~~l~~l~~~~C~~l~~~ 144 (167)
-+.+|..|+.+ |.....+..--..+|.+|+.+ ++.. ...+..--|.+|.+|+..
T Consensus 315 aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS---LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT---CCEECTTTBTTCTTCCEE
T ss_pred hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc---ccEehHHHhhCCCCCCEE
Confidence 36778777754 333333333346789999888 3221 012223368889888765
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.11 E-value=3.9 Score=25.43 Aligned_cols=32 Identities=19% Similarity=-0.025 Sum_probs=23.2
Q ss_pred ccccccccccC--CCCccccccccccCCccchhc
Q 045006 88 NLNYSERLQSR--PKLPSNLEWLLAHRCTALESG 119 (167)
Q Consensus 88 ~l~~c~~l~~l--~~~~~~L~~L~l~~c~~L~~~ 119 (167)
-+.+|..|+++ |.....+..--..+|.+|+.+
T Consensus 15 aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i 48 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNIGLLYDGMFSGCTALEKL 48 (100)
T ss_dssp TTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCE
T ss_pred HhcCCCCCcEEEcCCchheEcHHHHhccCCccEE
Confidence 48899988765 444444444457799999999
Done!