BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045008
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116n Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site:e498t Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein From
Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498d Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116e Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 354 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 412
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 413 GTHPIHLHLVSFRVLD 428
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of Cota-Laccase:
I494a Mutant
Length = 513
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 99 YGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRL---AR 155
Y S +++ I ++ Y G + LL N R +PV E P VG T + + R
Sbjct: 358 YPSVQHERIQNIRTLKLAGTQDEY-GRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTR 416
Query: 156 GYAIAQTHWMDLKSGD 171
G H + + D
Sbjct: 417 GTHPIHLHLVSFRVLD 432
>pdb|3JQU|A Chain A, Crystal Structure Of Clostridium Histolyticum Colg
Collagenase Polycystic Kidney Disease Domain At 1.4
Angstrom Resolution
pdb|3JQU|B Chain B, Crystal Structure Of Clostridium Histolyticum Colg
Collagenase Polycystic Kidney Disease Domain At 1.4
Angstrom Resolution
pdb|3JS7|A Chain A, Crystal Structure Of Clostridium Histolyticum Colg
Collagenase Pkd Domain 2 At 1.6 Angstrom Resolution
pdb|3JS7|B Chain B, Crystal Structure Of Clostridium Histolyticum Colg
Collagenase Pkd Domain 2 At 1.6 Angstrom Resolution
Length = 87
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 80 PLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFVFVDGS 121
P+ + P + VGR G S+D+ G I+S + F DG+
Sbjct: 4 PIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA 45
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 27.7 bits (60), Expect = 3.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 80 PLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFVFVDGS 121
P+ + P + VGR G S+D+ G I+S + F DG+
Sbjct: 703 PIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA 744
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 80 PLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFVFVDGS 121
P+ + P + VGR G S+D+ G I+S + F DG+
Sbjct: 703 PIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA 744
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 122 YNGSSISLLGNNRAMNPVREMPIVGGTGAFRLARGYAIAQTHWMD 166
+ ++S++ N A+ R AFR A G A+A HW+D
Sbjct: 146 FTDRTVSVIAGNSAVYDSR-------ADAFRAAFGVALADAHWVD 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,873,790
Number of Sequences: 62578
Number of extensions: 183512
Number of successful extensions: 328
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 17
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)