BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045008
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
PE=2 SV=2
Length = 184
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 39 NLQFYFHDTL-SGQNP----SAVRIAQ--ATDTDKSP-TLFGVLMMADDPLTETPDPKSK 90
NL FYFHD L +G+N SA+ A + T +P + FG +++ DDP+T + SK
Sbjct: 33 NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSK 92
Query: 91 LVGRAQGLYGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPIVGGTGA 150
VGRAQG Y +++ +S +FV ++ +++ +I+ G + + R++ + GGTG
Sbjct: 93 QVGRAQGFYIYDTKNTYTSWLSFTFV-LNSTHHQGTITFAGADPIVAKTRDISVTGGTGD 151
Query: 151 FRLARGYAIAQTHWMDLKSGDA 172
F + RG A T D G+A
Sbjct: 152 FFMHRGIATITT---DAFEGEA 170
>sp|Q91447|MP2K1_SERCA Dual specificity mitogen-activated protein kinase kinase 1
(Fragment) OS=Serinus canaria GN=MAP2K1 PE=2 SV=1
Length = 388
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 63 DTDKSPTLFGVLMMADDPLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFV 116
D+ + +FG + D P+TET P+ + GR YGS S+ + + + ++
Sbjct: 260 DSKELELMFGCPVEGDSPVTET-SPRQRAPGRPMSSYGSDSRPPMAIFELLDYI 312
>sp|P07206|PULA_KLEPN Pullulanase OS=Klebsiella pneumoniae GN=pulA PE=1 SV=2
Length = 1090
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 120 GSYNGSSISLLGNNRAMNPVREMPIVGGTGAFRLARGYAIAQTHWMD 166
G + ++S++ N A+ R AFR A G A+A+ HW+D
Sbjct: 151 GDFTDRTVSVIAGNSAVYDSR-------ADAFRAAFGVALAEAHWVD 190
>sp|Q58256|MCRA_METJA Methyl-coenzyme M reductase I subunit alpha OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=mcrA PE=3 SV=2
Length = 553
Score = 30.0 bits (66), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 97 GLYGSASQDQLGLIMSMSFVFVDGSYNGSSISLLG---NNRAMNPVREMPIVGGTGAFRL 153
G YG QDQ G S+SF + GS + L G N AMN + G T A
Sbjct: 445 GFYGYDLQDQCGAANSLSFR----NDEGSPLELRGPNYPNYAMNVGHQGEYAGITQAAHS 500
Query: 154 ARGYAIA 160
ARG A A
Sbjct: 501 ARGDAFA 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,350,557
Number of Sequences: 539616
Number of extensions: 2434130
Number of successful extensions: 4736
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4730
Number of HSP's gapped (non-prelim): 10
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)