Query 045008
Match_columns 182
No_of_seqs 129 out of 547
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.6 1.2E-06 4.2E-11 70.1 13.3 101 69-181 43-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.3 7.7E-06 2.6E-10 65.7 11.6 90 69-165 51-144 (195)
3 2q03_A Uncharacterized protein 45.1 95 0.0032 23.2 10.2 87 89-179 45-136 (138)
4 3h6j_A Neuraminidase, sialidas 26.1 64 0.0022 27.2 4.0 56 105-162 371-436 (438)
5 2ooj_A Hypothetical protein; s 20.4 2.7E+02 0.0092 20.7 12.6 74 89-162 41-120 (141)
6 2krs_A Probable enterotoxin; a 15.9 68 0.0023 20.7 1.7 17 80-96 12-28 (74)
7 2kq8_A Cell WALL hydrolase; GF 14.5 50 0.0017 21.2 0.7 17 80-96 13-29 (70)
8 2xdp_A Lysine-specific demethy 14.1 2.3E+02 0.0077 20.8 4.3 56 68-143 64-119 (123)
9 2kt8_A Probable surface protei 13.9 1.1E+02 0.0037 20.0 2.3 17 80-96 14-30 (76)
10 2qqr_A JMJC domain-containing 11.9 2.1E+02 0.0071 20.9 3.5 55 68-142 63-117 (118)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.58 E-value=1.2e-06 Score=70.05 Aligned_cols=101 Identities=24% Similarity=0.191 Sum_probs=79.2
Q ss_pred CCceeEEEEeeccccCCCCCCCceEeEEEEEEEec----CCCceEEEEEEEEEecccccCceEEEecCcCCCCCceeeee
Q 045008 69 TLFGVLMMADDPLTETPDPKSKLVGRAQGLYGSAS----QDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~v~d~~lt~gp~~~S~~vGraqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~~V 144 (182)
..-|..+.|+++|.+|.. -+.||.-+|+-+... +.+..+-..+++.|.+. | .|+|+|..... +...++|
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LAI 115 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLAI 115 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceeeE
Confidence 458999999999997764 588999999977664 33456777778888543 4 59999996433 3468999
Q ss_pred ecccceeeeeeEEEEEEEEEeeCCCCCeEEEEEEEEE
Q 045008 145 VGGTGAFRLARGYAIAQTHWMDLKSGDAIVGYNVTVI 181 (182)
Q Consensus 145 VGGTG~Fr~ArG~a~~~t~~~d~~~~~~i~e~~V~v~ 181 (182)
.||||.|+.|+|.++++++.+ + .-++|.+||.
T Consensus 116 TGGTGif~gA~G~Vkl~~i~~-P----~k~~yTf~L~ 147 (188)
T 2brj_A 116 TGGAGIFEGAYGQVKLQQLVY-P----TKLFYTFYLK 147 (188)
T ss_dssp EEEEETTTTCEEEEEEEEEET-T----TEEEEEEEEE
T ss_pred ecCcceEcceEEEEEEEeecc-C----ceEEEEEEEe
Confidence 999999999999999998865 2 2578888774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.31 E-value=7.7e-06 Score=65.68 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCceeEEEEeeccccCCCCCCCceEeEEEEEEEec----CCCceEEEEEEEEEecccccCceEEEecCcCCCCCceeeee
Q 045008 69 TLFGVLMMADDPLTETPDPKSKLVGRAQGLYGSAS----QDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMPI 144 (182)
Q Consensus 69 ~~FG~~~v~d~~lt~gp~~~S~~vGraqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~~V 144 (182)
...|+++.|.++|.+|.. -+.||-..|+-+.-. ..+..+--.+++.|.+ .| +|+++|..-..+ ..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~e-Ds~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYITYE-DSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEETTB-CEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceeccC-ceeEEE
Confidence 458999999999999986 678999999976653 2233444556777754 26 599999975443 357999
Q ss_pred ecccceeeeeeEEEEEEEEEe
Q 045008 145 VGGTGAFRLARGYAIAQTHWM 165 (182)
Q Consensus 145 VGGTG~Fr~ArG~a~~~t~~~ 165 (182)
+||||.|+.|+|-+++..+.+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999999887754
No 3
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=45.11 E-value=95 Score=23.24 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=50.9
Q ss_pred CCceEeEEEEEEEecC-CCceEEEEEEEEE-ecccccCc-eEEEecCcCCCCCceeeeeec--ccceeeeeeEEEEEEEE
Q 045008 89 SKLVGRAQGLYGSASQ-DQLGLIMSMSFVF-VDGSYNGS-SISLLGNNRAMNPVREMPIVG--GTGAFRLARGYAIAQTH 163 (182)
Q Consensus 89 S~~vGraqG~~~~~~~-~~~~~~~~~~~vF-~~g~~~GS-tl~v~G~~~~~~~~~E~~VVG--GTG~Fr~ArG~a~~~t~ 163 (182)
-.+.|+.++-++.+-. ++...++.+.-+= .-+.-+|| .|+-.|..........|-||= |||++...+|-..+...
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 3477888888887754 4444444432211 11123554 344445544444446888998 99999999999987542
Q ss_pred EeeCCCCCeEEEEEEE
Q 045008 164 WMDLKSGDAIVGYNVT 179 (182)
Q Consensus 164 ~~d~~~~~~i~e~~V~ 179 (182)
+ .+..-++|+..
T Consensus 125 --~--~G~h~Y~~~y~ 136 (138)
T 2q03_A 125 --E--NGQANYQITLQ 136 (138)
T ss_dssp --S--TTEEEEEEEEE
T ss_pred --c--CCceEEEEEEe
Confidence 1 24444555544
No 4
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=26.14 E-value=64 Score=27.20 Aligned_cols=56 Identities=30% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCceEEEEEEEEEecccccCceEEEe-cCcCCCCCceeeeeeccccee---------eeeeEEEEEEE
Q 045008 105 DQLGLIMSMSFVFVDGSYNGSSISLL-GNNRAMNPVREMPIVGGTGAF---------RLARGYAIAQT 162 (182)
Q Consensus 105 ~~~~~~~~~~~vF~~g~~~GStl~v~-G~~~~~~~~~E~~VVGGTG~F---------r~ArG~a~~~t 162 (182)
....|.+.|--.|++|.+|||--++. |...+. ...-+-|=|||.| |.|.||-..|.
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslnir--lgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIR--LGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEEE--EEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEEE--eccCceeeeccccccccchhhheeccceEEEEe
Confidence 34568888888999999999854442 222111 1223455688888 77888876654
No 5
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=20.42 E-value=2.7e+02 Score=20.71 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=45.5
Q ss_pred CCceEeEEEEEEEecCC--CceEEEEEEEEE-ecccccCc-eEEEecCcCCCCCceeeeeec--ccceeeeeeEEEEEEE
Q 045008 89 SKLVGRAQGLYGSASQD--QLGLIMSMSFVF-VDGSYNGS-SISLLGNNRAMNPVREMPIVG--GTGAFRLARGYAIAQT 162 (182)
Q Consensus 89 S~~vGraqG~~~~~~~~--~~~~~~~~~~vF-~~g~~~GS-tl~v~G~~~~~~~~~E~~VVG--GTG~Fr~ArG~a~~~t 162 (182)
-.+.|+.++-++.+-.+ +...++.+..+= .-+.-+|| .|+-.|..........|-||= |||++...+|-..+..
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~Gr~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~~~ 120 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISI 120 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEETTEEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEECCceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 34678888888877653 444444442211 11123565 344555554444557889998 9999999999998754
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.90 E-value=68 Score=20.75 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.5
Q ss_pred ccccCCCCCCCceEeEE
Q 045008 80 PLTETPDPKSKLVGRAQ 96 (182)
Q Consensus 80 ~lt~gp~~~S~~vGraq 96 (182)
.|+.+|+.++++||++.
T Consensus 12 nvRs~P~~~~~vi~~l~ 28 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTLR 28 (74)
T ss_dssp EEESSSSTTTCEEEEEE
T ss_pred EEEcCCCCCChHHEEEC
Confidence 58899999999998864
No 7
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=14.45 E-value=50 Score=21.15 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.2
Q ss_pred ccccCCCCCCCceEeEE
Q 045008 80 PLTETPDPKSKLVGRAQ 96 (182)
Q Consensus 80 ~lt~gp~~~S~~vGraq 96 (182)
.|+.||+.+++++|++.
T Consensus 13 nvRsgP~~~~~ii~~l~ 29 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGALP 29 (70)
T ss_dssp CSSSSSSSCTTSCCCCC
T ss_pred EEEcCCCCCCceEEEEC
Confidence 58899999999998753
No 8
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=14.13 E-value=2.3e+02 Score=20.84 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=34.4
Q ss_pred CCCceeEEEEeeccccCCCCCCCceEeEEEEEEEecCCCceEEEEEEEEEecccccCceEEEecCcCCCCCceeee
Q 045008 68 PTLFGVLMMADDPLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREMP 143 (182)
Q Consensus 68 ~~~FG~~~v~d~~lt~gp~~~S~~vGraqG~~~~~~~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~~ 143 (182)
+..-|..+-+.|+ +|.-.+++.+|+ .....+++.|++| | ...+-|+.+.....|+|
T Consensus 64 pP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 64 PPAEGEVVQVKWP--DGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCEEEEEcC--CCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 4557877777775 666555444444 3446778899875 4 44556666655555554
No 9
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=13.93 E-value=1.1e+02 Score=19.99 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.9
Q ss_pred ccccCCCCCCCceEeEE
Q 045008 80 PLTETPDPKSKLVGRAQ 96 (182)
Q Consensus 80 ~lt~gp~~~S~~vGraq 96 (182)
.|+.+|+.+++++|.+.
T Consensus 14 nvR~~Ps~~~~ii~~l~ 30 (76)
T 2kt8_A 14 NVREGASTSSKVIGSLS 30 (76)
T ss_dssp EEESSSSTTSCEEEEEC
T ss_pred EEEcCCCCCChhhEEEC
Confidence 58899999999888753
No 10
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=11.87 E-value=2.1e+02 Score=20.89 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCCceeEEEEeeccccCCCCCCCceEeEEEEEEEecCCCceEEEEEEEEEecccccCceEEEecCcCCCCCceee
Q 045008 68 PTLFGVLMMADDPLTETPDPKSKLVGRAQGLYGSASQDQLGLIMSMSFVFVDGSYNGSSISLLGNNRAMNPVREM 142 (182)
Q Consensus 68 ~~~FG~~~v~d~~lt~gp~~~S~~vGraqG~~~~~~~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~ 142 (182)
+..-|..+-+.|+ +|.-.+++-+|+ .....+++.|++| |.+ .+-|+.+.....|+
T Consensus 63 pP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~Y~V~feDg----s~~-~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 63 PPAEGEVVQVRWT--DGQVYGAKFVAS-------------HPIQMYQVEFEDG----SQL-VVKRDDVYTLDEEL 117 (118)
T ss_dssp CCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEEETTS----CEE-EECGGGEEETTSCC
T ss_pred CCCCCCEEEEEcC--CCCEeeeEEece-------------eEEEEEEEEECCC----CEE-EEcHHHeeccccCC
Confidence 4557888877775 776555555554 3446678899874 433 44555444333333
Done!