Query 045010
Match_columns 146
No_of_seqs 104 out of 191
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01277 Oleosin: Oleosin; In 100.0 6.8E-53 1.5E-57 319.4 15.3 118 18-135 1-118 (118)
2 PF01277 Oleosin: Oleosin; In 96.8 0.1 2.2E-06 40.2 13.9 102 34-144 10-116 (118)
3 PF11990 DUF3487: Protein of u 93.4 0.46 1E-05 36.3 7.2 49 43-102 31-80 (121)
4 PF08006 DUF1700: Protein of u 93.2 2.8 6.1E-05 32.6 11.6 24 41-65 101-124 (181)
5 PF04156 IncA: IncA protein; 92.2 4.5 9.7E-05 31.4 12.2 15 56-70 33-47 (191)
6 PRK09459 pspG phage shock prot 90.3 3.6 7.7E-05 29.7 8.3 27 34-60 12-38 (76)
7 PF02987 LEA_4: Late embryogen 87.6 1.5 3.2E-05 27.6 4.3 32 111-142 2-33 (44)
8 PF05957 DUF883: Bacterial pro 87.3 0.91 2E-05 32.1 3.6 37 107-143 26-62 (94)
9 PF12732 YtxH: YtxH-like prote 86.2 5.6 0.00012 27.1 7.0 24 111-134 25-48 (74)
10 PF05957 DUF883: Bacterial pro 84.0 1.9 4.1E-05 30.5 4.0 36 107-142 37-72 (94)
11 PF07178 TraL: TraL protein; 82.9 4.6 9.9E-05 29.0 5.6 34 73-106 29-63 (95)
12 PRK10414 biopolymer transport 82.0 25 0.00055 29.6 10.5 69 43-124 145-216 (244)
13 PRK10801 colicin uptake protei 81.3 24 0.00053 29.2 10.1 53 43-101 139-194 (227)
14 PF09583 Phageshock_PspG: Phag 80.0 18 0.00039 25.4 7.5 26 34-59 12-37 (65)
15 TIGR03750 conj_TIGR03750 conju 78.8 9.3 0.0002 29.0 6.3 32 44-75 29-61 (111)
16 PF07332 DUF1469: Protein of u 77.3 24 0.00053 25.4 10.9 18 85-102 83-100 (121)
17 PF02987 LEA_4: Late embryogen 76.6 6.6 0.00014 24.6 4.2 36 108-143 6-41 (44)
18 TIGR02975 phageshock_pspG phag 72.8 30 0.00065 24.3 7.4 26 34-59 11-36 (64)
19 PF04156 IncA: IncA protein; 71.3 42 0.00091 26.0 8.5 20 60-79 33-52 (191)
20 PRK10404 hypothetical protein; 70.8 7.2 0.00016 28.8 3.8 32 110-141 47-78 (101)
21 PF12537 DUF3735: Protein of u 70.7 15 0.00033 25.2 5.2 56 69-130 14-70 (72)
22 PF01618 MotA_ExbB: MotA/TolQ/ 69.6 21 0.00046 26.7 6.2 53 43-101 70-125 (139)
23 PRK15083 PTS system mannitol-s 68.2 17 0.00036 34.3 6.5 30 88-119 326-355 (639)
24 PF14333 DUF4389: Domain of un 67.9 39 0.00085 23.7 7.8 42 84-135 24-65 (80)
25 PF12597 DUF3767: Protein of u 67.6 10 0.00022 28.8 4.1 63 43-120 45-108 (118)
26 TIGR01666 YCCS hypothetical me 66.1 58 0.0013 31.5 9.8 22 43-64 432-453 (704)
27 TIGR01667 YCCS_YHJK integral m 64.3 60 0.0013 31.3 9.5 19 43-61 434-452 (701)
28 TIGR02797 exbB tonB-system ene 63.4 60 0.0013 26.3 8.2 69 43-124 134-205 (211)
29 PF12270 Cyt_c_ox_IV: Cytochro 62.7 15 0.00032 29.0 4.3 46 58-103 82-135 (137)
30 PRK13707 conjugal transfer pil 61.0 27 0.00058 25.8 5.3 29 77-105 39-68 (101)
31 PRK15100 amino acid ABC transp 58.2 93 0.002 24.7 8.8 9 107-115 116-124 (220)
32 PF13829 DUF4191: Domain of un 57.8 34 0.00073 29.0 5.9 42 38-81 35-76 (224)
33 PRK06231 F0F1 ATP synthase sub 56.7 54 0.0012 26.6 6.8 11 55-65 16-26 (205)
34 PF08372 PRT_C: Plant phosphor 56.4 27 0.00059 27.9 4.9 55 89-144 9-80 (156)
35 PF03773 DUF318: Predicted per 54.5 1.2E+02 0.0025 25.7 8.7 48 56-103 88-138 (307)
36 PRK11365 ssuC alkanesulfonate 54.0 1.1E+02 0.0023 25.2 8.3 10 17-26 40-49 (263)
37 COG4709 Predicted membrane pro 52.8 1.4E+02 0.003 25.1 10.4 23 77-99 152-174 (195)
38 PF12732 YtxH: YtxH-like prote 52.7 28 0.00062 23.5 4.0 35 108-142 33-71 (74)
39 COG4709 Predicted membrane pro 52.3 1.4E+02 0.003 25.0 11.6 13 85-97 164-176 (195)
40 TIGR01597 PYST-B Plasmodium yo 51.7 45 0.00097 28.9 5.8 11 90-100 234-244 (255)
41 PHA00476 hypothetical protein 51.1 1.1E+02 0.0024 23.5 7.4 57 50-110 15-71 (110)
42 PF04632 FUSC: Fusaric acid re 50.5 2E+02 0.0043 26.2 11.3 86 30-119 40-134 (650)
43 PF12811 BaxI_1: Bax inhibitor 50.0 1.7E+02 0.0037 25.4 9.7 29 41-71 90-119 (274)
44 TIGR02796 tolQ TolQ protein. T 48.6 1.5E+02 0.0032 24.2 11.8 91 15-123 114-208 (215)
45 PRK01345 heat shock protein Ht 48.4 1.8E+02 0.0039 25.1 9.3 29 93-121 49-77 (317)
46 PF06695 Sm_multidrug_ex: Puta 47.8 1.2E+02 0.0025 22.7 8.0 14 88-101 34-47 (121)
47 PRK04897 heat shock protein Ht 47.7 1.4E+02 0.003 25.4 8.2 33 89-121 58-90 (298)
48 COG5393 Predicted membrane pro 47.7 1.4E+02 0.003 23.6 9.7 20 35-54 50-69 (131)
49 PF01970 TctA: Tripartite tric 46.7 30 0.00064 31.2 4.2 30 40-69 93-122 (419)
50 cd03513 CrtW_beta-carotene-ket 46.7 71 0.0015 26.4 6.1 23 40-62 1-23 (225)
51 TIGR03750 conj_TIGR03750 conju 46.4 1.3E+02 0.0028 22.9 7.9 62 39-104 16-78 (111)
52 PRK10404 hypothetical protein; 44.6 44 0.00095 24.7 4.1 38 106-143 32-69 (101)
53 PF01618 MotA_ExbB: MotA/TolQ/ 44.2 29 0.00063 25.9 3.2 19 42-60 102-120 (139)
54 PF08006 DUF1700: Protein of u 43.9 1.5E+02 0.0033 22.9 11.3 14 53-66 119-132 (181)
55 PF11286 DUF3087: Protein of u 43.8 1.1E+02 0.0024 24.8 6.6 42 88-130 59-105 (165)
56 COG0600 TauC ABC-type nitrate/ 43.3 2.1E+02 0.0044 24.3 8.5 61 54-114 99-160 (258)
57 PRK11026 ftsX cell division AB 42.7 1.9E+02 0.004 24.9 8.3 25 80-104 284-308 (309)
58 PF11460 DUF3007: Protein of u 42.4 1.3E+02 0.0029 22.8 6.5 25 89-116 44-68 (104)
59 TIGR00439 ftsX putative protei 42.3 1.6E+02 0.0035 25.2 7.8 27 78-104 282-308 (309)
60 COG0811 TolQ Biopolymer transp 41.2 2E+02 0.0042 23.5 9.4 70 43-124 134-205 (216)
61 COG0811 TolQ Biopolymer transp 40.7 32 0.00069 28.1 3.2 20 41-60 165-184 (216)
62 PF02416 MttA_Hcf106: mttA/Hcf 40.5 55 0.0012 21.4 3.7 36 106-141 18-53 (53)
63 PRK05812 secD preprotein trans 39.2 1.5E+02 0.0033 27.5 7.6 33 43-75 435-467 (498)
64 PRK09776 putative diguanylate 38.8 3.6E+02 0.0077 25.8 10.5 18 43-60 141-158 (1092)
65 COG2148 WcaJ Sugar transferase 38.6 33 0.00071 29.1 3.0 20 54-73 50-69 (226)
66 COG4425 Predicted membrane pro 38.4 80 0.0017 30.2 5.7 62 38-104 46-107 (588)
67 PF03379 CcmB: CcmB protein; 38.2 2.1E+02 0.0047 23.1 8.1 47 35-81 132-184 (215)
68 PF14019 DUF4235: Protein of u 38.1 79 0.0017 22.1 4.4 25 88-112 16-41 (78)
69 COG4818 Predicted membrane pro 37.4 1.7E+02 0.0037 22.3 6.3 49 55-103 37-86 (105)
70 PF14017 DUF4233: Protein of u 37.3 1.7E+02 0.0038 21.8 7.7 32 72-103 68-99 (107)
71 PF06120 Phage_HK97_TLTM: Tail 36.8 65 0.0014 28.3 4.6 45 79-132 21-68 (301)
72 TIGR02762 TraL_TIGR type IV co 36.0 1.2E+02 0.0027 21.8 5.3 14 92-105 52-65 (95)
73 PF12420 DUF3671: Protein of u 35.5 1.5E+02 0.0033 21.9 5.8 18 83-100 82-99 (104)
74 TIGR00930 2a30 K-Cl cotranspor 34.8 2.8E+02 0.0061 27.8 9.1 42 64-105 501-542 (953)
75 PF01034 Syndecan: Syndecan do 34.5 5.3 0.00011 27.9 -2.0 25 89-115 27-51 (64)
76 PF13886 DUF4203: Domain of un 34.4 2.3E+02 0.0051 22.4 8.8 82 21-102 54-159 (210)
77 PRK00523 hypothetical protein; 34.3 1.5E+02 0.0032 21.2 5.3 16 90-105 25-40 (72)
78 PRK03072 heat shock protein Ht 33.5 3E+02 0.0065 23.3 8.8 28 90-117 49-76 (288)
79 PRK01315 putative inner membra 33.2 1.5E+02 0.0033 26.1 6.4 31 50-80 217-247 (329)
80 PRK00247 putative inner membra 32.8 4E+02 0.0087 24.6 12.5 56 47-111 227-285 (429)
81 PF02397 Bac_transf: Bacterial 32.1 66 0.0014 26.1 3.7 24 50-73 6-29 (187)
82 COG4537 ComGC Competence prote 31.4 41 0.0009 25.7 2.2 28 39-66 12-39 (107)
83 PRK15127 multidrug efflux syst 31.0 88 0.0019 31.2 5.0 46 48-96 981-1029(1049)
84 PRK03982 heat shock protein Ht 29.7 3.4E+02 0.0073 22.8 8.7 31 92-122 49-79 (288)
85 TIGR01998 PTS-II-BC-nag PTS sy 29.6 2.1E+02 0.0046 26.3 6.9 42 46-87 151-192 (476)
86 PRK10263 DNA translocase FtsK; 29.6 4.6E+02 0.0099 28.0 9.8 21 44-64 142-162 (1355)
87 PF07787 DUF1625: Protein of u 29.3 1.6E+02 0.0035 24.2 5.6 58 31-96 188-245 (248)
88 PF05915 DUF872: Eukaryotic pr 29.1 1.1E+02 0.0023 23.2 4.2 12 92-103 94-105 (115)
89 PRK01844 hypothetical protein; 28.9 2.1E+02 0.0046 20.4 5.4 17 90-107 24-40 (72)
90 PF12729 4HB_MCP_1: Four helix 28.7 1.9E+02 0.0042 20.3 5.3 23 77-99 18-40 (181)
91 PF12769 DUF3814: Domain of un 28.5 1.5E+02 0.0031 21.8 4.6 44 37-87 35-78 (87)
92 TIGR02797 exbB tonB-system ene 28.5 56 0.0012 26.5 2.7 20 42-61 166-185 (211)
93 PF06796 NapE: Periplasmic nit 28.4 1.9E+02 0.0042 19.6 4.9 14 88-101 39-52 (56)
94 TIGR01478 STEVOR variant surfa 28.1 3.5E+02 0.0077 24.0 7.7 18 31-48 181-198 (295)
95 PRK13022 secF preprotein trans 28.0 3.5E+02 0.0076 23.0 7.6 29 45-73 234-262 (289)
96 PRK13023 bifunctional preprote 28.0 3.5E+02 0.0076 26.7 8.4 73 42-116 379-459 (758)
97 COG1289 Predicted membrane pro 27.7 3.9E+02 0.0085 25.1 8.4 20 44-63 408-427 (674)
98 PRK10555 aminoglycoside/multid 27.6 2.1E+02 0.0045 28.6 6.9 51 51-107 981-1034(1037)
99 PF12153 CAP18_C: LPS binding 27.6 77 0.0017 18.9 2.5 22 110-131 4-25 (28)
100 TIGR01097 PhnE phosphonate ABC 27.2 3.3E+02 0.0071 21.8 7.7 25 90-114 136-161 (250)
101 PF12277 DUF3618: Protein of u 27.0 78 0.0017 20.2 2.7 20 109-128 11-30 (49)
102 PRK10490 sensor protein KdpD; 26.6 2.7E+02 0.0059 27.3 7.4 6 95-100 458-463 (895)
103 COG4575 ElaB Uncharacterized c 26.6 1.4E+02 0.0029 22.8 4.3 37 107-143 36-72 (104)
104 TIGR02805 exbB2 tonB-system en 26.5 81 0.0018 24.9 3.2 16 43-58 103-118 (138)
105 PRK10631 p-hydroxybenzoic acid 26.0 6.1E+02 0.013 24.6 11.4 85 32-120 58-151 (652)
106 PF12259 DUF3609: Protein of u 25.9 18 0.00039 32.2 -0.6 14 90-103 314-327 (361)
107 PF06103 DUF948: Bacterial pro 25.7 2.3E+02 0.0049 19.5 7.0 21 122-142 50-70 (90)
108 PF03597 CcoS: Cytochrome oxid 25.5 1.6E+02 0.0036 18.8 4.0 28 84-117 13-40 (45)
109 PRK12652 putative monovalent c 25.5 96 0.0021 27.5 3.8 38 27-64 172-210 (357)
110 PRK12933 secD preprotein trans 25.5 2.8E+02 0.006 26.8 7.1 43 40-82 540-582 (604)
111 PRK11463 fxsA phage T7 F exclu 25.3 2.2E+02 0.0049 22.2 5.5 43 10-55 59-101 (148)
112 PF12270 Cyt_c_ox_IV: Cytochro 25.1 1.6E+02 0.0034 23.3 4.5 15 111-125 68-82 (137)
113 PRK14402 membrane protein; Pro 25.0 3.6E+02 0.0079 22.1 6.9 35 50-84 107-144 (198)
114 TIGR01104 V_PPase vacuolar-typ 24.6 1.9E+02 0.0041 28.5 5.8 38 84-122 10-47 (697)
115 PF05337 CSF-1: Macrophage col 24.4 25 0.00054 30.9 0.0 27 62-103 229-255 (285)
116 COG4575 ElaB Uncharacterized c 24.4 1.4E+02 0.0031 22.6 4.0 32 110-141 50-81 (104)
117 PF00873 ACR_tran: AcrB/AcrD/A 24.2 5.9E+02 0.013 25.1 9.2 77 39-121 432-512 (1021)
118 PRK10132 hypothetical protein; 24.0 1.3E+02 0.0029 22.5 3.8 25 108-132 41-65 (108)
119 PF05745 CRPA: Chlamydia 15 kD 23.6 1.9E+02 0.0042 23.2 4.8 39 29-72 68-106 (150)
120 COG4241 Predicted membrane pro 23.3 1.1E+02 0.0024 27.3 3.8 40 81-121 95-144 (314)
121 TIGR02796 tolQ TolQ protein. T 23.2 97 0.0021 25.2 3.2 20 42-61 170-189 (215)
122 PF03672 UPF0154: Uncharacteri 23.1 1.8E+02 0.0039 20.2 4.1 15 91-105 18-32 (64)
123 PF14898 DUF4491: Domain of un 22.7 1.8E+02 0.0039 21.8 4.2 32 68-99 45-76 (94)
124 PLN02769 Probable galacturonos 22.6 35 0.00077 32.9 0.6 32 52-84 21-52 (629)
125 PF05532 CsbD: CsbD-like; Int 22.4 98 0.0021 20.2 2.5 15 110-124 7-21 (53)
126 TIGR00847 ccoS cytochrome oxid 22.3 2.2E+02 0.0047 18.9 4.2 28 84-117 14-41 (51)
127 PRK09946 hypothetical protein; 22.2 1.7E+02 0.0037 25.6 4.6 28 90-117 12-39 (270)
128 PRK11832 putative DNA-binding 22.1 1.2E+02 0.0027 25.2 3.6 52 89-140 116-171 (207)
129 PF12666 PrgI: PrgI family pro 22.0 2.8E+02 0.006 19.1 6.2 15 18-32 18-32 (93)
130 TIGR02973 nitrate_rd_NapE peri 22.0 2.3E+02 0.005 18.3 4.8 14 88-101 26-39 (42)
131 COG1292 BetT Choline-glycine b 21.8 6.3E+02 0.014 24.2 8.6 48 11-59 436-483 (537)
132 PRK10132 hypothetical protein; 21.5 1.8E+02 0.0038 21.8 4.0 33 108-141 52-84 (108)
133 COG1289 Predicted membrane pro 21.1 7E+02 0.015 23.5 8.8 26 20-45 405-430 (674)
134 PF02654 CobS: Cobalamin-5-pho 20.5 2.5E+02 0.0055 22.9 5.1 14 44-57 31-44 (235)
135 COG1133 SbmA ABC-type long-cha 20.5 2.6E+02 0.0056 25.7 5.5 41 9-62 187-227 (405)
136 PF14219 DUF4328: Domain of un 20.4 1.9E+02 0.0041 22.2 4.2 26 75-100 25-50 (171)
137 PF04186 FxsA: FxsA cytoplasmi 20.3 3.8E+02 0.0082 20.0 6.0 43 10-55 55-97 (119)
138 TIGR01190 ccmB heme exporter p 20.2 5E+02 0.011 21.4 9.8 43 39-81 133-181 (211)
No 1
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=100.00 E-value=6.8e-53 Score=319.38 Aligned_cols=118 Identities=56% Similarity=0.943 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045010 18 STPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYS 97 (146)
Q Consensus 18 ss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~ 97 (146)
|++|+++++++++++++||+|+|+||+||++||+++||||+||||||||++|+++|+++||++||+||++++++++|+||
T Consensus 1 s~~qvl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~Gfl~sg~~g~~~ls~lsW~~~ 80 (118)
T PF01277_consen 1 STSQVLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVAGFLTSGAFGLTALSSLSWMYN 80 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCchHHHHHHHhhhhHHhhHHHHHHhHHH
Q 045010 98 YVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQYV 135 (146)
Q Consensus 98 y~~g~~p~g~~~~d~Ar~ri~d~a~~v~~kake~Gq~i 135 (146)
|+||+||+++||+|+||+|++|+++|++||+||+||+|
T Consensus 81 y~rg~~~~~~~q~d~Ak~ri~d~a~~v~~kake~gq~~ 118 (118)
T PF01277_consen 81 YFRGRHPPGPDQLDYAKRRIADTASYVGQKAKEVGQKI 118 (118)
T ss_pred HhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999999999999999999985
No 2
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=96.83 E-value=0.1 Score=40.16 Aligned_cols=102 Identities=26% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhH---HHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhcCCCCCCC
Q 045010 34 TLLFLSGLTLTGTVIALIMATPVLVLFSPILV---PAAIAVFLATVGFLVSGG--CGVTAITVLSWIYSYVKGKHPPGAD 108 (146)
Q Consensus 34 ~LL~LaGlTL~gt~i~L~vaTPLfvifSPVLV---PAai~~~l~~~gfl~sg~--~g~tals~lsW~~~y~~g~~p~g~~ 108 (146)
+++...|..|.=+-+-|+-+.=-+++.+|++| |.-+-++.++ ++..+|- .|.-+++.++|+-.-.+--+-..+.
T Consensus 10 ~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~-~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~~ 88 (118)
T PF01277_consen 10 TLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAI-GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHPP 88 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 44444455554444444544445899999887 6555554443 4444443 4555788999999988766655444
Q ss_pred chHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhhhc
Q 045010 109 HLDYARTKIADKARDMTERAKEYGQYVQQKAQEATQ 144 (146)
Q Consensus 109 ~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a~~ 144 (146)
.. |.-++.++|-+|..+|+.+|+||.++
T Consensus 89 ~~--------~q~d~Ak~ri~d~a~~v~~kake~gq 116 (118)
T PF01277_consen 89 GP--------DQLDYAKRRIADTASYVGQKAKEVGQ 116 (118)
T ss_pred CC--------ccHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 43 33455566666777777778887764
No 3
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=93.43 E-value=0.46 Score=36.29 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcC
Q 045010 43 LTGTVIALIMATPVLVLFSPI-LVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGK 102 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifSPV-LVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~ 102 (146)
..++++|+.++.|+-++++++ .+|..+.++.+..-++. -.|+-++-|||
T Consensus 31 ~~~~~~g~~~gl~la~~~g~~a~~pt~~ll~~~~~v~~g-----------g~~l~rlKRGK 80 (121)
T PF11990_consen 31 GVGFVAGLVVGLPLALLTGWWAMIPTGALLGPILGVFVG-----------GKLLARLKRGK 80 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHcCC
Confidence 357788889999999999988 67877666665544433 25666666653
No 4
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=93.22 E-value=2.8 Score=32.64 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhH
Q 045010 41 LTLTGTVIALIMATPVLVLFSPILV 65 (146)
Q Consensus 41 lTL~gt~i~L~vaTPLfvifSPVLV 65 (146)
+.+...++++.++.. .++++|++.
T Consensus 101 ~~~~~~~~~~~i~~~-~~i~~~~~l 124 (181)
T PF08006_consen 101 IVLILLVLALIIAVI-AFILSGIIL 124 (181)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334444555555443 345555544
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.20 E-value=4.5 Score=31.43 Aligned_cols=15 Identities=40% Similarity=0.211 Sum_probs=7.1
Q ss_pred hHHHhhhhhHHHHHH
Q 045010 56 VLVLFSPILVPAAIA 70 (146)
Q Consensus 56 LfvifSPVLVPAai~ 70 (146)
+-.++|+++..+.++
T Consensus 33 l~~~~s~~lg~~~lA 47 (191)
T PF04156_consen 33 LGALISFILGIALLA 47 (191)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555555444433
No 6
>PRK09459 pspG phage shock protein G; Reviewed
Probab=90.35 E-value=3.6 Score=29.72 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 045010 34 TLLFLSGLTLTGTVIALIMATPVLVLF 60 (146)
Q Consensus 34 ~LL~LaGlTL~gt~i~L~vaTPLfvif 60 (146)
..|+++|+|+.|...++.+++-+..+.
T Consensus 12 ~~LlvTGiSllgv~aAl~va~~vM~l~ 38 (76)
T PRK09459 12 VMLLVTGISLLGIIAALGVATLVMFLG 38 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999998887665543
No 7
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=87.55 E-value=1.5 Score=27.56 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhh
Q 045010 111 DYARTKIADKARDMTERAKEYGQYVQQKAQEA 142 (146)
Q Consensus 111 d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a 142 (146)
|+++.+..+.....++|+.|+.++..+|+.|+
T Consensus 2 e~a~~Ka~e~~d~a~~ka~e~kd~a~eKa~ea 33 (44)
T PF02987_consen 2 EAAKEKASEAKDAAKEKAGEAKDAAAEKAEEA 33 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 8
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=87.27 E-value=0.91 Score=32.14 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhhh
Q 045010 107 ADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEAT 143 (146)
Q Consensus 107 ~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a~ 143 (146)
.+..+.+|.|+.+...+..++++|..+.++.++++..
T Consensus 26 ~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 62 (94)
T PF05957_consen 26 GEKADEARDRAEEALDDARDRAEDAADQAREQAREAA 62 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766666666543
No 9
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=86.16 E-value=5.6 Score=27.07 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhHHhhHHHHHHhHH
Q 045010 111 DYARTKIADKARDMTERAKEYGQY 134 (146)
Q Consensus 111 d~Ar~ri~d~a~~v~~kake~Gq~ 134 (146)
+.-|.++.+.+.+++++++|+-+.
T Consensus 25 ~e~R~~l~~~~~~~~~~~~~~~~~ 48 (74)
T PF12732_consen 25 KETREKLKDKAEDLKDKAKDLYEE 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444433
No 10
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=84.04 E-value=1.9 Score=30.52 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=29.8
Q ss_pred CCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhh
Q 045010 107 ADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEA 142 (146)
Q Consensus 107 ~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a 142 (146)
.+.++.+|.++.|..+++.+++++...+..+.++|.
T Consensus 37 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 37 EEALDDARDRAEDAADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356888999999999999999988888888877763
No 11
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=82.88 E-value=4.6 Score=29.03 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHhhcCCCCC
Q 045010 73 LATVGFLVSG-GCGVTAITVLSWIYSYVKGKHPPG 106 (146)
Q Consensus 73 l~~~gfl~sg-~~g~tals~lsW~~~y~~g~~p~g 106 (146)
..+.|++.+. ..|+..-..+.|.||+++.++|.|
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~~~~g 63 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFKKGRGRG 63 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 3344555554 356666667899999999888753
No 12
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=82.05 E-value=25 Score=29.58 Aligned_cols=69 Identities=20% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhHHH---hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHhh
Q 045010 43 LTGTVIALIMATPVLVL---FSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIAD 119 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvi---fSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d 119 (146)
|.|||+|++-+.--+=. -+|-.|-.+|.-+|.++ ++|+..--.-...|||++.+ +|.-..+|.+
T Consensus 145 LlGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitT------a~GL~vAIPAliayn~f~~r-------i~~~~~~me~ 211 (244)
T PRK10414 145 LFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT------AIGLVAAIPAVVIYNVFARQ-------IGGYKAMLGD 211 (244)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 56888888875332210 25666666666666554 34555555566899999753 3444445544
Q ss_pred hhHHh
Q 045010 120 KARDM 124 (146)
Q Consensus 120 ~a~~v 124 (146)
.+.+.
T Consensus 212 ~a~~l 216 (244)
T PRK10414 212 VAAQV 216 (244)
T ss_pred HHHHH
Confidence 44443
No 13
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=81.29 E-value=24 Score=29.16 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhHHHh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 045010 43 LTGTVIALIMATPVLVLF---SPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKG 101 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvif---SPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g 101 (146)
|.|||+|++-+.--+=.- +|-.+-.+|..+|.++ ++|+..-=.-...|||+..
T Consensus 139 LlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitT------a~GL~vAIPAli~yN~f~~ 194 (227)
T PRK10801 139 LFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIAT------AIGLFAAIPAVMAYNRLNQ 194 (227)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 568888887753222110 3444444555555443 3455544455578999974
No 14
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=79.99 E-value=18 Score=25.42 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045010 34 TLLFLSGLTLTGTVIALIMATPVLVL 59 (146)
Q Consensus 34 ~LL~LaGlTL~gt~i~L~vaTPLfvi 59 (146)
..|.++|+|+.|...++.+++-+..+
T Consensus 12 ~~Ll~TGvsllgv~aA~~va~~vm~l 37 (65)
T PF09583_consen 12 AMLLVTGVSLLGVLAALAVAFAVMFL 37 (65)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999998855544
No 15
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.79 E-value=9.3 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhHHHhh-hhhHHHHHHHHHHH
Q 045010 44 TGTVIALIMATPVLVLFS-PILVPAAIAVFLAT 75 (146)
Q Consensus 44 ~gt~i~L~vaTPLfvifS-PVLVPAai~~~l~~ 75 (146)
++.+.|+++..|+.+++. -+++|..+.++.++
T Consensus 29 ~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l 61 (111)
T TIGR03750 29 VGLAAGLVLGLLLALLAGPWALIPTGALLGPIL 61 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888877776 56677666655543
No 16
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=77.28 E-value=24 Score=25.40 Aligned_cols=18 Identities=11% Similarity=-0.046 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 045010 85 GVTAITVLSWIYSYVKGK 102 (146)
Q Consensus 85 g~tals~lsW~~~y~~g~ 102 (146)
.+.+.-.+.|..|.++++
T Consensus 83 l~la~i~~~~~~~~l~~~ 100 (121)
T PF07332_consen 83 LLLALILLLIGRRRLRRA 100 (121)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344455666777777753
No 17
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=76.56 E-value=6.6 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred CchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhhh
Q 045010 108 DHLDYARTKIADKARDMTERAKEYGQYVQQKAQEAT 143 (146)
Q Consensus 108 ~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a~ 143 (146)
++...++....+++++++|++.|-.+...+++.|..
T Consensus 6 ~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd~a~eka 41 (44)
T PF02987_consen 6 EKASEAKDAAKEKAGEAKDAAAEKAEEAKDSAKEKA 41 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777766666666666655543
No 18
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=72.77 E-value=30 Score=24.27 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045010 34 TLLFLSGLTLTGTVIALIMATPVLVL 59 (146)
Q Consensus 34 ~LL~LaGlTL~gt~i~L~vaTPLfvi 59 (146)
..|.++|+|+.|...++.+++-+..+
T Consensus 11 ~~Ll~TGisllgv~aA~~va~~vm~l 36 (64)
T TIGR02975 11 VMLMVTGISLLGVLAALGVAVLFMAL 36 (64)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999988887765544
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.33 E-value=42 Score=25.95 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 045010 60 FSPILVPAAIAVFLATVGFL 79 (146)
Q Consensus 60 fSPVLVPAai~~~l~~~gfl 79 (146)
++|+..+....+.++.+.++
T Consensus 33 l~~~~s~~lg~~~lAlg~vL 52 (191)
T PF04156_consen 33 LGALISFILGIALLALGVVL 52 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333
No 20
>PRK10404 hypothetical protein; Provisional
Probab=70.76 E-value=7.2 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=15.7
Q ss_pred hHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHh
Q 045010 110 LDYARTKIADKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 110 ~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
++.+|.|+.|..+.+.+++|+..+..-+.+||
T Consensus 47 L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 47 LDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555444444443
No 21
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=70.67 E-value=15 Score=25.20 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCC-CCchHHHHHHHhhhhHHhhHHHHH
Q 045010 69 IAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPG-ADHLDYARTKIADKARDMTERAKE 130 (146)
Q Consensus 69 i~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g-~~~~d~Ar~ri~d~a~~v~~kake 130 (146)
-+++..+.++|+ |.++++.-.-.+.|+.. |.. ..++..+.+++..+-..+.+|-||
T Consensus 14 ~ViGVt~mAiLS----G~gaVstpy~~~~~~~~--~v~~~~~i~~~~~~l~~t~~~l~~Kk~~ 70 (72)
T PF12537_consen 14 GVIGVTLMAILS----GFGAVSTPYYYFSYFRR--PVSRESDINNAERRLWHTRDMLVEKKKR 70 (72)
T ss_pred HHHHHHHHHHHh----hhhHHccHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777776 44445544444444432 333 344555666665555555555444
No 22
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=69.60 E-value=21 Score=26.69 Aligned_cols=53 Identities=32% Similarity=0.372 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhhHHH---hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 045010 43 LTGTVIALIMATPVLVL---FSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKG 101 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvi---fSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g 101 (146)
|.||++|++.+..-+=. -.|--+=..|..+|.. + .+|+..--...++|+|++.
T Consensus 70 LlGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~t----T--~~GL~vai~~~~~~~~l~~ 125 (139)
T PF01618_consen 70 LLGTVIGMIEAFQALAETGSGDPSQLAGGISVALIT----T--AYGLVVAIPALPFYNYLKR 125 (139)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHH
Confidence 56889988776443322 1233333333333332 2 3344433334488898874
No 23
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=68.22 E-value=17 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchHHHHHHHhh
Q 045010 88 AITVLSWIYSYVKGKHPPGADHLDYARTKIAD 119 (146)
Q Consensus 88 als~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d 119 (146)
.-.+++|+++++.+++ ..|.+|.|++|+.+
T Consensus 326 v~~v~t~~~~~~~~~~--~~~~~~~~~~~~~~ 355 (639)
T PRK15083 326 VSFVVSAILLKTSKVK--EEDDLEAATRRMQD 355 (639)
T ss_pred HHHHHHHHHHHhcccc--chhhHHHHHHHHHH
Confidence 3457788888777653 12369999998854
No 24
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=67.86 E-value=39 Score=23.66 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhhhHHhhHHHHHHhHHH
Q 045010 84 CGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQYV 135 (146)
Q Consensus 84 ~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~~v~~kake~Gq~i 135 (146)
+++..++.+.|++.-++|+.| .++.|-...+.++.-++..|.
T Consensus 24 ~~~~~~~~~q~~~~L~tg~~p----------~~L~~f~~~l~~y~~rv~~y~ 65 (80)
T PF14333_consen 24 IVLGVLVLIQWFAILFTGRYP----------EPLFDFGAGLSRYIYRVLAYL 65 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCC----------HhHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999987 455566666666666666654
No 25
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=67.59 E-value=10 Score=28.84 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhhcCCCCCCCchHHHHHHHhhh
Q 045010 43 LTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYS-YVKGKHPPGADHLDYARTKIADK 120 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~-y~~g~~p~g~~~~d~Ar~ri~d~ 120 (146)
|.|..-|+++..=-|++-|++.--+ =-++.+|+ ..|+.+|-|= |-|.++ -++++.++..+.++
T Consensus 45 L~Gi~~G~~vG~~~fl~~~~~~~A~----nwavgsF~--------l~s~~~we~Cr~~r~~~---~~~~~~~~e~~~~k 108 (118)
T PF12597_consen 45 LYGIAGGFGVGGLRFLFTSNPRKAA----NWAVGSFF--------LGSLGSWEYCRYNRRKE---RQQMKRAVEAMQEK 108 (118)
T ss_pred HHHHHHHHHHHhhhhcccCCCccch----hhhhHHHH--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444444555555578888776543 23333443 2577788773 433322 23344444444433
No 26
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=66.09 E-value=58 Score=31.49 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhHHHhhhhh
Q 045010 43 LTGTVIALIMATPVLVLFSPIL 64 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifSPVL 64 (146)
+.||++|.+++.+++.++-+..
T Consensus 432 i~GTllG~~lg~~ll~l~p~~~ 453 (704)
T TIGR01666 432 IIGTLLGVVIGSPLLYFNPSLE 453 (704)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 4599999999999887764433
No 27
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=64.29 E-value=60 Score=31.27 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhHHHhh
Q 045010 43 LTGTVIALIMATPVLVLFS 61 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifS 61 (146)
+.||++|.+++.+++.++.
T Consensus 434 i~GTl~G~llg~~l~~l~p 452 (701)
T TIGR01667 434 IIGTVVGLVIGVALHFLIP 452 (701)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4599999999988665543
No 28
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=63.37 E-value=60 Score=26.31 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhHHHh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHhh
Q 045010 43 LTGTVIALIMATPVLVLF---SPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIAD 119 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvif---SPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d 119 (146)
|.|||+|++-+.=-+=-- +|-.|-.+|.-+|.+ + ++|+..-=.-...|||++. +.|.-.++|.+
T Consensus 134 LLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALit----T--A~GL~VAIPAli~yn~f~~-------ri~~~~~~le~ 200 (211)
T TIGR02797 134 LFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLA----T--AIGLVAAIPAVVIYNVFAR-------SIAGYRALLAD 200 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 568888887653222110 233333344444433 3 3455444455578999974 35666666655
Q ss_pred hhHHh
Q 045010 120 KARDM 124 (146)
Q Consensus 120 ~a~~v 124 (146)
-+.++
T Consensus 201 ~~~e~ 205 (211)
T TIGR02797 201 ASAGV 205 (211)
T ss_pred HHHHH
Confidence 55443
No 29
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=62.71 E-value=15 Score=28.99 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=31.8
Q ss_pred HHhhh-hhHHHHHHHHHHHHH-------HHhhhhhHHHHHHHHHHHHHHhhcCC
Q 045010 58 VLFSP-ILVPAAIAVFLATVG-------FLVSGGCGVTAITVLSWIYSYVKGKH 103 (146)
Q Consensus 58 vifSP-VLVPAai~~~l~~~g-------fl~sg~~g~tals~lsW~~~y~~g~~ 103 (146)
=.||| =+=|..++.+.++.+ -+..=+.++...+..-|+|.|-||+|
T Consensus 82 GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG~~~~i~~~~G~vfEy~rg~~ 135 (137)
T PF12270_consen 82 GFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIGAVLLIVAVVGWVFEYYRGPE 135 (137)
T ss_pred CcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCcc
Confidence 35888 566766555444433 24444566778899999999999976
No 30
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=60.98 E-value=27 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=17.1
Q ss_pred HHHhhhhh-HHHHHHHHHHHHHHhhcCCCC
Q 045010 77 GFLVSGGC-GVTAITVLSWIYSYVKGKHPP 105 (146)
Q Consensus 77 gfl~sg~~-g~tals~lsW~~~y~~g~~p~ 105 (146)
||+++-.+ |+..-..+.|.||+++..+++
T Consensus 39 Gi~~~~~l~g~i~g~~~~~~~r~lK~g~g~ 68 (101)
T PRK13707 39 GITTSKYLFGIIAAVLVWFGIRKLKKGRGS 68 (101)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 44444333 333334567899999877653
No 31
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=58.24 E-value=93 Score=24.71 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=5.9
Q ss_pred CCchHHHHH
Q 045010 107 ADHLDYART 115 (146)
Q Consensus 107 ~~~~d~Ar~ 115 (146)
+++.|.||.
T Consensus 116 ~~~~eAA~~ 124 (220)
T PRK15100 116 KGQWEAAAS 124 (220)
T ss_pred HhHHHHHHH
Confidence 466777763
No 32
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=57.78 E-value=34 Score=29.01 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhh
Q 045010 38 LSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVS 81 (146)
Q Consensus 38 LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~s 81 (146)
+.|..+.+.++|+++. -.+++.|+=+++++++++.+.+--+-
T Consensus 35 ~l~~~~v~v~ig~l~~--~~~~~~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 35 FLGPIAVFVLIGLLFG--SWWYWLIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred HHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666 44566677777777777777665543
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=56.72 E-value=54 Score=26.62 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.6
Q ss_pred hhHHHhhhhhH
Q 045010 55 PVLVLFSPILV 65 (146)
Q Consensus 55 PLfvifSPVLV 65 (146)
-.|+|+||+||
T Consensus 16 ~~~~~~~~~~~ 26 (205)
T PRK06231 16 FSFLIISLFLV 26 (205)
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 34
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=56.41 E-value=27 Score=27.88 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCCCCC-chHHHH----------------HHHhhhhHHhhHHHHHHhHHHHHHhHhhhc
Q 045010 89 ITVLSWIYSYVKGKHPPGAD-HLDYAR----------------TKIADKARDMTERAKEYGQYVQQKAQEATQ 144 (146)
Q Consensus 89 ls~lsW~~~y~~g~~p~g~~-~~d~Ar----------------~ri~d~a~~v~~kake~Gq~iq~ka~~a~~ 144 (146)
.....|-|++ |.++|+..| ++++|. .|=.|.-++-.|+-|++++.+|....|.+.
T Consensus 9 ~~~~~w~yr~-rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 9 FLIGLWNYRF-RPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred HHHHHhcccc-CCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788887 667776333 122221 122233334456778888889988887654
No 35
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=54.54 E-value=1.2e+02 Score=25.73 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=25.5
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHhhcCC
Q 045010 56 VLVLFSPILVPAAIAVFLATVGFLVSG---GCGVTAITVLSWIYSYVKGKH 103 (146)
Q Consensus 56 LfvifSPVLVPAai~~~l~~~gfl~sg---~~g~tals~lsW~~~y~~g~~ 103 (146)
-|++-||++-|..+.......|.--.- .+++...-...|+.+.+..++
T Consensus 88 aFl~a~p~~n~~~~~~~~~~lg~~~~~~r~~~~~~~~~~~g~l~~~~~~~~ 138 (307)
T PF03773_consen 88 AFLLASPLLNPIVLLLTWAALGWKFTLIRIVLGLILAILVGLLFSRLFKRR 138 (307)
T ss_pred HHHHhhHHhhHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 367778888887777666555532211 122222334456666555433
No 36
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=53.95 E-value=1.1e+02 Score=25.16 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=5.6
Q ss_pred CCHHHHHHHH
Q 045010 17 PSTPLAVKFL 26 (146)
Q Consensus 17 Pss~qvl~~~ 26 (146)
|+..+++..+
T Consensus 40 P~p~~v~~~~ 49 (263)
T PRK11365 40 PSPEGVVTAF 49 (263)
T ss_pred CCHHHHHHHH
Confidence 5556665543
No 37
>COG4709 Predicted membrane protein [Function unknown]
Probab=52.85 E-value=1.4e+02 Score=25.06 Aligned_cols=23 Identities=22% Similarity=-0.093 Sum_probs=12.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHh
Q 045010 77 GFLVSGGCGVTAITVLSWIYSYV 99 (146)
Q Consensus 77 gfl~sg~~g~tals~lsW~~~y~ 99 (146)
.+..|.++|++...+..-+.+|.
T Consensus 152 ~~IGs~lLgl~~~~~if~iv~~~ 174 (195)
T COG4709 152 IGIGSLLLGLGLGIVIFAIVKYA 174 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666766665544444444
No 38
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=52.67 E-value=28 Score=23.54 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=17.5
Q ss_pred CchHHHHHHHhhhhHHhhH----HHHHHhHHHHHHhHhh
Q 045010 108 DHLDYARTKIADKARDMTE----RAKEYGQYVQQKAQEA 142 (146)
Q Consensus 108 ~~~d~Ar~ri~d~a~~v~~----kake~Gq~iq~ka~~a 142 (146)
++.+..+.++.|...+++| +++++-+.+.++++|.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~e~ 71 (74)
T PF12732_consen 33 DKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKEKAKEL 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556665555555333 4444444455555543
No 39
>COG4709 Predicted membrane protein [Function unknown]
Probab=52.32 E-value=1.4e+02 Score=25.01 Aligned_cols=13 Identities=8% Similarity=0.429 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 045010 85 GVTAITVLSWIYS 97 (146)
Q Consensus 85 g~tals~lsW~~~ 97 (146)
+....-...|.+|
T Consensus 164 ~~~if~iv~~~~r 176 (195)
T COG4709 164 GIVIFAIVKYASR 176 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 40
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=51.70 E-value=45 Score=28.91 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=7.6
Q ss_pred HHHHHHHHHhh
Q 045010 90 TVLSWIYSYVK 100 (146)
Q Consensus 90 s~lsW~~~y~~ 100 (146)
-...|-|+|++
T Consensus 234 ~~~~~~~qy~~ 244 (255)
T TIGR01597 234 YWSIWRFQYVK 244 (255)
T ss_pred HHHHHHHHHHH
Confidence 44568888875
No 41
>PHA00476 hypothetical protein
Probab=51.12 E-value=1.1e+02 Score=23.45 Aligned_cols=57 Identities=23% Similarity=0.472 Sum_probs=31.7
Q ss_pred HHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCch
Q 045010 50 LIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHL 110 (146)
Q Consensus 50 L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~~~ 110 (146)
|+.-.-.+|+.+|.=|--= ++.+....|..| -++-+..+.|+=-+-+-++|.|-+++
T Consensus 15 l~~cAn~lILSlp~sVtSK-~icl~lssfvfs---Svallvil~~L~TW~TTkkpdgLNRl 71 (110)
T PHA00476 15 LVLCANYLILSLPLSVTSK-GICLTLSSFVFS---SVALLVILVLLGTWSTTRKPDGLNRL 71 (110)
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHhccccccCCCcchHH
Confidence 3344455566666544321 122333333332 23446778888777777888888766
No 42
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=50.47 E-value=2e+02 Score=26.16 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh--hhhhHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHhh
Q 045010 30 TIGGTLLFLSGLTLTGTVIALIMATPVLVLF--SPILVPAAIAVFLATVGFLVS-------GGCGVTAITVLSWIYSYVK 100 (146)
Q Consensus 30 ~~gg~LL~LaGlTL~gt~i~L~vaTPLfvif--SPVLVPAai~~~l~~~gfl~s-------g~~g~tals~lsW~~~y~~ 100 (146)
|..|..+-=+=-=+.||++|.+++.=+..+| +|++.-..+.+.+....+++. =+|.+++.+...-.+..+.
T Consensus 40 p~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~ 119 (650)
T PF04632_consen 40 PSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVG 119 (650)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccc
Confidence 3334444334344556666666555444444 777766666666555555554 2444555555444443332
Q ss_pred cCCCCCCCchHHHHHHHhh
Q 045010 101 GKHPPGADHLDYARTKIAD 119 (146)
Q Consensus 101 g~~p~g~~~~d~Ar~ri~d 119 (146)
+| .+-.|.+-.|+.+
T Consensus 120 --~p--~~~f~~a~~R~~e 134 (650)
T PF04632_consen 120 --NP--EQVFDLALWRVLE 134 (650)
T ss_pred --Cc--cHHHHHHHHHHHH
Confidence 33 2235555555555
No 43
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=50.01 E-value=1.7e+02 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhh-HHHHHHH
Q 045010 41 LTLTGTVIALIMATPVLVLFSPIL-VPAAIAV 71 (146)
Q Consensus 41 lTL~gt~i~L~vaTPLfvifSPVL-VPAai~~ 71 (146)
+.+.|.++||++ -++..|.|.. .|+.+.+
T Consensus 90 ~~~~g~i~glvl--~lv~~F~~~~~sp~l~~~ 119 (274)
T PF12811_consen 90 LAIVGAIGGLVL--ALVISFKRKVWSPALAPI 119 (274)
T ss_pred HHHHHHHHHHHH--HHHHHhCCccCChHHHHH
Confidence 456777777665 5677786665 5654433
No 44
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=48.64 E-value=1.5e+02 Score=24.17 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 045010 15 KAPSTPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATPVLVL----FSPILVPAAIAVFLATVGFLVSGGCGVTAIT 90 (146)
Q Consensus 15 ~~Pss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTPLfvi----fSPVLVPAai~~~l~~~gfl~sg~~g~tals 90 (146)
..|...+-+.++.......-+|. |.|||+|++-+.--+=. -+|-.+-.+|..+|.++ ++|+..-=
T Consensus 114 ~~~~le~~l~~L~ti~~~aPllG-----LLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitT------a~GL~vAI 182 (215)
T TIGR02796 114 ESEKLESGLPFLATIGSTSPFIG-----LFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIAT------AIGLFAAI 182 (215)
T ss_pred HHHHHHhhhHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 34445555555555555555554 45788887765433322 12333444444444433 23444333
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHhhhhHH
Q 045010 91 VLSWIYSYVKGKHPPGADHLDYARTKIADKARD 123 (146)
Q Consensus 91 ~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~~ 123 (146)
.-.=.|||++.+ +|.-..+|.+.+.+
T Consensus 183 Pali~yn~f~~~-------i~~~~~~me~~~~~ 208 (215)
T TIGR02796 183 PAVIAYNKLSTQ-------VNKIEQRYENFADE 208 (215)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 334579999753 44444444444433
No 45
>PRK01345 heat shock protein HtpX; Provisional
Probab=48.35 E-value=1.8e+02 Score=25.12 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHhhhh
Q 045010 93 SWIYSYVKGKHPPGADHLDYARTKIADKA 121 (146)
Q Consensus 93 sW~~~y~~g~~p~g~~~~d~Ar~ri~d~a 121 (146)
.|+.....+.++..+++-..-++++.+.+
T Consensus 49 ~~~~~~~~~a~~v~~~~~p~L~~~v~~La 77 (317)
T PRK01345 49 DKMVLRMYGAQEVDERSAPELYRMVRDLA 77 (317)
T ss_pred HHHHHHHcCCeECCcccCHHHHHHHHHHH
Confidence 44555555666555554444444444433
No 46
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=47.78 E-value=1.2e+02 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhc
Q 045010 88 AITVLSWIYSYVKG 101 (146)
Q Consensus 88 als~lsW~~~y~~g 101 (146)
-+-.+-|+.++++.
T Consensus 34 i~~~~~~i~~~l~~ 47 (121)
T PF06695_consen 34 ILLFLDKILKWLKR 47 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556677777765
No 47
>PRK04897 heat shock protein HtpX; Provisional
Probab=47.73 E-value=1.4e+02 Score=25.43 Aligned_cols=33 Identities=9% Similarity=-0.051 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCchHHHHHHHhhhh
Q 045010 89 ITVLSWIYSYVKGKHPPGADHLDYARTKIADKA 121 (146)
Q Consensus 89 ls~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a 121 (146)
...-.|+.....+.+|..+++-.+-++++.+.+
T Consensus 58 ~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la 90 (298)
T PRK04897 58 IFQSTNVVMSMNHAREVTEEEAPELWHIVEDMA 90 (298)
T ss_pred HHhhHHHHHHhCCCEECChhhhHHHHHHHHHHH
Confidence 444567777777777776655444444444444
No 48
>COG5393 Predicted membrane protein [Function unknown]
Probab=47.70 E-value=1.4e+02 Score=23.58 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 045010 35 LLFLSGLTLTGTVIALIMAT 54 (146)
Q Consensus 35 LL~LaGlTL~gt~i~L~vaT 54 (146)
+|+++|+|+.=+..||.--+
T Consensus 50 lllm~gLtl~fa~~~lmsL~ 69 (131)
T COG5393 50 LLLMAGLTLLFAAFGLMSLM 69 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888887777665433
No 49
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=46.71 E-value=30 Score=31.20 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhHHHHH
Q 045010 40 GLTLTGTVIALIMATPVLVLFSPILVPAAI 69 (146)
Q Consensus 40 GlTL~gt~i~L~vaTPLfvifSPVLVPAai 69 (146)
++...++++|-+++.+++++|+|.+-|.+.
T Consensus 93 ~~a~~~S~~G~~is~~~l~~~a~~la~~a~ 122 (419)
T PF01970_consen 93 RLAAIGSFIGGLISAILLILFAPPLAPFAL 122 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999999888764
No 50
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=46.71 E-value=71 Score=26.43 Aligned_cols=23 Identities=52% Similarity=0.761 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhh
Q 045010 40 GLTLTGTVIALIMATPVLVLFSP 62 (146)
Q Consensus 40 GlTL~gt~i~L~vaTPLfvifSP 62 (146)
||++++.++++-+++=+..++-+
T Consensus 1 gl~~a~~i~~~w~~~~~~~~~~~ 23 (225)
T cd03513 1 GLTLAGLIIAAWLASHVHALFFP 23 (225)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666655555544433
No 51
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.37 E-value=1.3e+02 Score=22.87 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhh-hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCC
Q 045010 39 SGLTLTGTVIALIMATPVLVLFS-PILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHP 104 (146)
Q Consensus 39 aGlTL~gt~i~L~vaTPLfvifS-PVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p 104 (146)
=|+|...-.+...+.++.-++.+ |+..+.. ...+.-++++.+..+++.. .-.|+-++-|| +|
T Consensus 16 rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~-~w~~~p~~~lig~~l~v~~--gg~~l~rlKRG-rP 78 (111)
T TIGR03750 16 RGLTADELGVAAGVGLAAGLVLGLLLALLAG-PWALIPTGALLGPILVVLI--GGKLLARLKRG-KP 78 (111)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hHHHHHHHHcC-CC
Confidence 35555555555555544443333 2122222 2333344444444443322 22345555454 44
No 52
>PRK10404 hypothetical protein; Provisional
Probab=44.58 E-value=44 Score=24.69 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhhh
Q 045010 106 GADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEAT 143 (146)
Q Consensus 106 g~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a~ 143 (146)
..++.+..|.|+.+.-++.+++..+.+..++.|++++.
T Consensus 32 a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa 69 (101)
T PRK10404 32 ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAV 69 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678999999999999998888888888888887765
No 53
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=44.19 E-value=29 Score=25.94 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhHHHh
Q 045010 42 TLTGTVIALIMATPVLVLF 60 (146)
Q Consensus 42 TL~gt~i~L~vaTPLfvif 60 (146)
.|..|+.||+++.|.++++
T Consensus 102 Al~tT~~GL~vai~~~~~~ 120 (139)
T PF01618_consen 102 ALITTAYGLVVAIPALPFY 120 (139)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888888887777544
No 54
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=43.90 E-value=1.5e+02 Score=22.93 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=7.3
Q ss_pred hhhhHHHhhhhhHH
Q 045010 53 ATPVLVLFSPILVP 66 (146)
Q Consensus 53 aTPLfvifSPVLVP 66 (146)
..|++++++.+...
T Consensus 119 ~~~~~l~~~~~~~~ 132 (181)
T PF08006_consen 119 LSGIILLISGIFGG 132 (181)
T ss_pred HHHHHHHHHHHHHh
Confidence 45666555554433
No 55
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.77 E-value=1.1e+02 Score=24.84 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-----chHHHHHHHhhhhHHhhHHHHH
Q 045010 88 AITVLSWIYSYVKGKHPPGAD-----HLDYARTKIADKARDMTERAKE 130 (146)
Q Consensus 88 als~lsW~~~y~~g~~p~g~~-----~~d~Ar~ri~d~a~~v~~kake 130 (146)
++-..+|+.+.++. ||-..+ ++.+.-+||..|=+.++..++|
T Consensus 59 ~~~~~~~~l~~~k~-~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~ 105 (165)
T PF11286_consen 59 GLLLTSALLRQLKT-HPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQ 105 (165)
T ss_pred HHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45556778887774 664333 3445556777766666665554
No 56
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=43.30 E-value=2.1e+02 Score=24.31 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHhhcCCCCCCCchHHHH
Q 045010 54 TPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTA-ITVLSWIYSYVKGKHPPGADHLDYAR 114 (146)
Q Consensus 54 TPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~ta-ls~lsW~~~y~~g~~p~g~~~~d~Ar 114 (146)
-|++.++-|+=.-|-+-+.++.-|+--..-+.++. .+.+-=+.|-..|-+-+-+|.+|.+|
T Consensus 99 ~P~i~~l~~iP~lA~~Pl~ilwfG~g~~s~i~i~~~~~ffpi~int~~Gvr~v~~~~~~~ar 160 (258)
T COG0600 99 DPLVQVLRPIPPLALAPLAILWFGIGETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELAR 160 (258)
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 47777776653334444555555554444555555 34444456666665545456666665
No 57
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=42.68 E-value=1.9e+02 Score=24.86 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCCC
Q 045010 80 VSGGCGVTAITVLSWIYSYVKGKHP 104 (146)
Q Consensus 80 ~sg~~g~tals~lsW~~~y~~g~~p 104 (146)
...++.++.+++..=+.||+|..+|
T Consensus 284 ~~~~~~ig~l~s~~s~~r~L~~~~~ 308 (309)
T PRK11026 284 LLVCSMIGWVAAWLATVQHLRRFTP 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444566677787788899987655
No 58
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=42.41 E-value=1.3e+02 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.519 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 045010 89 ITVLSWIYSYVKGKHPPGADHLDYARTK 116 (146)
Q Consensus 89 ls~lsW~~~y~~g~~p~g~~~~d~Ar~r 116 (146)
+..+.|+..|+-+ +...+|-|.+.|
T Consensus 44 ~glvgW~~sYlfR---V~t~~MTy~~Q~ 68 (104)
T PF11460_consen 44 LGLVGWVSSYLFR---VVTGKMTYMQQR 68 (104)
T ss_pred HHHHHHHhHHHhh---hccCCCcHHHHH
Confidence 3458999999874 234557666654
No 59
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=42.31 E-value=1.6e+02 Score=25.24 Aligned_cols=27 Identities=4% Similarity=-0.149 Sum_probs=18.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcCCC
Q 045010 78 FLVSGGCGVTAITVLSWIYSYVKGKHP 104 (146)
Q Consensus 78 fl~sg~~g~tals~lsW~~~y~~g~~p 104 (146)
.+...+..+..+++..=+.||+|--.|
T Consensus 282 ~l~~~g~~lg~lgs~~s~~r~Lr~~~~ 308 (309)
T TIGR00439 282 LLLGFCIALGVVGAWLATTQHLLCFKA 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566667777778899887655
No 60
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=41.20 E-value=2e+02 Score=23.47 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhHHHhh--hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhh
Q 045010 43 LTGTVIALIMATPVLVLFS--PILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADK 120 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifS--PVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~ 120 (146)
|.|||+|+.-+ |.=.+ ==-=|++++-++..+=+. -+.|+.+--.-...|||++++ .+.-..++.+.
T Consensus 134 L~GTV~GIm~a---F~~i~~~~~~~~a~vA~GIseAL~a--TA~GL~vAIPAvi~yn~l~r~-------~~~~~~~~e~~ 201 (216)
T COG0811 134 LLGTVWGIMPA---FIGIGAGGGADLAVVAPGISEALIA--TAIGLFVAIPAVVAYNVLRRK-------VEELLAKLEDF 201 (216)
T ss_pred HHHHHHHHHHH---HHHHhccCCCCHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 46788887543 44444 002344444444443222 345666666677899999853 34444455444
Q ss_pred hHHh
Q 045010 121 ARDM 124 (146)
Q Consensus 121 a~~v 124 (146)
++++
T Consensus 202 ~~~l 205 (216)
T COG0811 202 AEEL 205 (216)
T ss_pred HHHH
Confidence 4433
No 61
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=40.75 E-value=32 Score=28.07 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 045010 41 LTLTGTVIALIMATPVLVLF 60 (146)
Q Consensus 41 lTL~gt~i~L~vaTPLfvif 60 (146)
..|..|++||++|.|-+++.
T Consensus 165 eAL~aTA~GL~vAIPAvi~y 184 (216)
T COG0811 165 EALIATAIGLFVAIPAVVAY 184 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888876553
No 62
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=40.54 E-value=55 Score=21.39 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHh
Q 045010 106 GADHLDYARTKIADKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 106 g~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
||+++-..-+.++..-++.++..+|.-+..++.++|
T Consensus 18 Gp~kLP~~~r~lG~~ir~fk~~~~~~~~~~~~~~~d 53 (53)
T PF02416_consen 18 GPKKLPELARSLGKAIREFKKAINEAKEEIEKEAKD 53 (53)
T ss_dssp -TTTHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 567776666667666666666666666655554443
No 63
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=39.15 E-value=1.5e+02 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHH
Q 045010 43 LTGTVIALIMATPVLVLFSPILVPAAIAVFLAT 75 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~ 75 (146)
+..++..++.+.|||++-++.+-|.+++..+.+
T Consensus 435 l~s~lTTlia~l~L~~~g~g~i~~fAitl~iGi 467 (498)
T PRK05812 435 LDSNITTLIAAIILYALGTGPVKGFAVTLGIGI 467 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 444555567778888888788888777665533
No 64
>PRK09776 putative diguanylate cyclase; Provisional
Probab=38.76 E-value=3.6e+02 Score=25.79 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhHHHh
Q 045010 43 LTGTVIALIMATPVLVLF 60 (146)
Q Consensus 43 L~gt~i~L~vaTPLfvif 60 (146)
..|.++|..+.+|+++..
T Consensus 141 ~~~~~~g~l~~~p~~l~~ 158 (1092)
T PRK09776 141 VLSEAIGMLALVPLGLLF 158 (1092)
T ss_pred HHHHHHHHHHHhhHhhhc
Confidence 467888999999988875
No 65
>COG2148 WcaJ Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]
Probab=38.58 E-value=33 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=13.6
Q ss_pred hhhHHHhhhhhHHHHHHHHH
Q 045010 54 TPVLVLFSPILVPAAIAVFL 73 (146)
Q Consensus 54 TPLfvifSPVLVPAai~~~l 73 (146)
.-.+++|||++.+.++++-+
T Consensus 50 ~~~L~v~sP~~l~iai~ikl 69 (226)
T COG2148 50 LIGLLLLSPVMLIIALAIKL 69 (226)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33456788888887776654
No 66
>COG4425 Predicted membrane protein [Function unknown]
Probab=38.39 E-value=80 Score=30.15 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCC
Q 045010 38 LSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHP 104 (146)
Q Consensus 38 LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p 104 (146)
+-+++-+|++.|.+.. -.=.+|-|.|=.-.+--+..||. .++|-++-..+-|+.+|++-..|
T Consensus 46 ~~~~s~tG~~~g~vff---~~sLTPSLLPr~~l~qgv~sgf~--~A~Gy~~gv~~~wl~~y~elp~~ 107 (588)
T COG4425 46 LRSLSATGLLMGTVFF---WASLTPSLLPRPWLFQGVLSGFS--LAAGYGAGVFLHWLWRYLELPES 107 (588)
T ss_pred HHhhccchHHHHHHHH---HHhcCccccCchHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhhCCCC
Confidence 4555566666665431 23357888887777777777775 45666666788999999987654
No 67
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=38.17 E-value=2.1e+02 Score=23.07 Aligned_cols=47 Identities=34% Similarity=0.443 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHh------hhhHHHhhhhhHHHHHHHHHHHHHHHhh
Q 045010 35 LLFLSGLTLTGTVIALIMA------TPVLVLFSPILVPAAIAVFLATVGFLVS 81 (146)
Q Consensus 35 LL~LaGlTL~gt~i~L~va------TPLfvifSPVLVPAai~~~l~~~gfl~s 81 (146)
++.-.|++..||+.+-... .=+-++..|+.+|..|...-+....+.+
T Consensus 132 ~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~~~~~t~~~~~g 184 (215)
T PF03379_consen 132 LLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIFAVQATTAALTG 184 (215)
T ss_pred HHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444567777777664443 2244567799999888877766655443
No 68
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=38.11 E-value=79 Score=22.10 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcCCCC-CCCchHH
Q 045010 88 AITVLSWIYSYVKGKHPP-GADHLDY 112 (146)
Q Consensus 88 als~lsW~~~y~~g~~p~-g~~~~d~ 112 (146)
+=-++.=.++..+|+.|| .++..|+
T Consensus 16 a~k~~~~~W~~~tg~~~P~~~~d~~~ 41 (78)
T PF14019_consen 16 AGKVFEQVWKKVTGREPPKDPDDPDR 41 (78)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCccc
Confidence 345556677899998888 6665555
No 69
>COG4818 Predicted membrane protein [Function unknown]
Probab=37.37 E-value=1.7e+02 Score=22.32 Aligned_cols=49 Identities=24% Similarity=0.475 Sum_probs=29.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHhhcCC
Q 045010 55 PVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTA-ITVLSWIYSYVKGKH 103 (146)
Q Consensus 55 PLfvifSPVLVPAai~~~l~~~gfl~sg~~g~ta-ls~lsW~~~y~~g~~ 103 (146)
--++.|+|+++=..++...=.-|-+.|+..++++ +-++.-|||-.||.+
T Consensus 37 QS~ltF~~l~~l~ill~~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe~ 86 (105)
T COG4818 37 QSFLTFLGLWLLIILLAFIPYIGWLLSGLVGLAAFILWLVCMYKAYRGER 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCCe
Confidence 4456666666655555555454777777777543 334444678788853
No 70
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=37.30 E-value=1.7e+02 Score=21.78 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 045010 72 FLATVGFLVSGGCGVTAITVLSWIYSYVKGKH 103 (146)
Q Consensus 72 ~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~ 103 (146)
.+..++|+.-.-+.+..+....|.|-...|++
T Consensus 68 ~~i~~g~v~p~m~vvG~iF~~~W~~~l~lg~~ 99 (107)
T PF14017_consen 68 LLIAGGFVHPAMFVVGVIFAAVWWYALYLGRR 99 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677788899998776644
No 71
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=36.75 E-value=65 Score=28.29 Aligned_cols=45 Identities=31% Similarity=0.569 Sum_probs=24.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHH---HhhhhHHhhHHHHHHh
Q 045010 79 LVSGGCGVTAITVLSWIYSYVKGKHPPGADHLDYARTK---IADKARDMTERAKEYG 132 (146)
Q Consensus 79 l~sg~~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~r---i~d~a~~v~~kake~G 132 (146)
|-+|-.|+..++.-.|.|=| .+.++||.. .+|.-.++++|.+++.
T Consensus 21 LvGGp~Gl~ml~AgA~Y~~y---------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 21 LVGGPPGLVMLGAGAWYYFY---------QNAEQARQEAIEFADSLDELKEKLKEMS 68 (301)
T ss_pred hhcchHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 34556666667777786666 335555542 3444445555555544
No 72
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=36.05 E-value=1.2e+02 Score=21.77 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=8.5
Q ss_pred HHHHHHHhhcCCCC
Q 045010 92 LSWIYSYVKGKHPP 105 (146)
Q Consensus 92 lsW~~~y~~g~~p~ 105 (146)
+.+.+|+++..+|.
T Consensus 52 ~~~~lrr~K~g~~~ 65 (95)
T TIGR02762 52 IWKRLRRIKGGEGE 65 (95)
T ss_pred HHHHHHHHHcCCCh
Confidence 34456777766664
No 73
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=35.53 E-value=1.5e+02 Score=21.89 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 045010 83 GCGVTAITVLSWIYSYVK 100 (146)
Q Consensus 83 ~~g~tals~lsW~~~y~~ 100 (146)
.+...++..++++|-+.+
T Consensus 82 ~~i~~~i~ll~iiYi~~K 99 (104)
T PF12420_consen 82 FIIFITIILLVIIYIFIK 99 (104)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 345566777778776653
No 74
>TIGR00930 2a30 K-Cl cotransporter.
Probab=34.81 E-value=2.8e+02 Score=27.78 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCC
Q 045010 64 LVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPP 105 (146)
Q Consensus 64 LVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~ 105 (146)
++|..-++..++.-|..+.-..+.++....=+|.|+.-++|.
T Consensus 501 ~~sllG~l~c~~lmf~i~w~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 501 WLSLLGASLCCAIMFLISWWAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 445444444445555555555555555566667777666654
No 75
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=34.46 E-value=5.3 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=2.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCchHHHHH
Q 045010 89 ITVLSWIYSYVKGKHPPGADHLDYART 115 (146)
Q Consensus 89 ls~lsW~~~y~~g~~p~g~~~~d~Ar~ 115 (146)
+-++.++||+. ++..|+-.+|.-|.
T Consensus 27 lLIlf~iyR~r--kkdEGSY~l~e~K~ 51 (64)
T PF01034_consen 27 LLILFLIYRMR--KKDEGSYDLDEPKP 51 (64)
T ss_dssp ----------S--------SS--S---
T ss_pred HHHHHHHHHHH--hcCCCCccCCCCCc
Confidence 34567788874 45567888888773
No 76
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=34.43 E-value=2.3e+02 Score=22.40 Aligned_cols=82 Identities=23% Similarity=0.181 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhHHH-------hhhhhHHHHHHHHHHHHHHH-h----
Q 045010 21 LAVKFLTAATIGGTLLFL--------SGLTLTGTVIALIMATPVLVL-------FSPILVPAAIAVFLATVGFL-V---- 80 (146)
Q Consensus 21 qvl~~~~~~~~gg~LL~L--------aGlTL~gt~i~L~vaTPLfvi-------fSPVLVPAai~~~l~~~gfl-~---- 80 (146)
+....++.+..|..+..+ .|+.+.|...|+.++.-++.. ..|.+++..+...+.+.+.+ +
T Consensus 54 ~~~~~v~g~~~G~i~g~~~~~~~~~~~glf~~G~~~G~~la~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~ 133 (210)
T PF13886_consen 54 LGASVVAGVLGGIILGLLWWAFLIYSVGLFLVGLLLGFLLAMWILSLPPGGLIIPHPDWVFWVLFLCLALVFGLLTLKFQ 133 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555544443 788888999999988666543 34667776665444332211 1
Q ss_pred ----hhhhHHHHHHHHHHHHHHhhcC
Q 045010 81 ----SGGCGVTAITVLSWIYSYVKGK 102 (146)
Q Consensus 81 ----sg~~g~tals~lsW~~~y~~g~ 102 (146)
--+..+-+-..+.|=.+|+.+.
T Consensus 134 k~~~I~~ts~~Ga~~i~~giD~f~~~ 159 (210)
T PF13886_consen 134 KPFLIVSTSFFGAYAIVLGIDYFVGA 159 (210)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 0112223344556666777665
No 77
>PRK00523 hypothetical protein; Provisional
Probab=34.29 E-value=1.5e+02 Score=21.18 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhcCCCC
Q 045010 90 TVLSWIYSYVKGKHPP 105 (146)
Q Consensus 90 s~lsW~~~y~~g~~p~ 105 (146)
-+--|+-||++...|.
T Consensus 25 iark~~~k~l~~NPpi 40 (72)
T PRK00523 25 VSKKMFKKQIRENPPI 40 (72)
T ss_pred HHHHHHHHHHHHCcCC
Confidence 3456788899854443
No 78
>PRK03072 heat shock protein HtpX; Provisional
Probab=33.50 E-value=3e+02 Score=23.32 Aligned_cols=28 Identities=4% Similarity=-0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 045010 90 TVLSWIYSYVKGKHPPGADHLDYARTKI 117 (146)
Q Consensus 90 s~lsW~~~y~~g~~p~g~~~~d~Ar~ri 117 (146)
....|+.+...|.++..+++-..-++.+
T Consensus 49 ~~s~~~~~~~~~~~~v~~~~~p~L~~~v 76 (288)
T PRK03072 49 WNSDKLALRAMHAQPVSEVQAPAMYRIV 76 (288)
T ss_pred HHhHHHHHHhcCCEECChhhhHHHHHHH
Confidence 3346666666666766555433333333
No 79
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=33.17 E-value=1.5e+02 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.6
Q ss_pred HHHhhhhHHHhhhhhHHHHHHHHHHHHHHHh
Q 045010 50 LIMATPVLVLFSPILVPAAIAVFLATVGFLV 80 (146)
Q Consensus 50 L~vaTPLfvifSPVLVPAai~~~l~~~gfl~ 80 (146)
+....|++++|+=+-+|+++.+--++.++.+
T Consensus 217 M~~imPim~~~~~~~fPaGL~LYW~~snl~s 247 (329)
T PRK01315 217 LLYLFPLMFLVSGIAFPVGVLFYWLTSNVWT 247 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999888776
No 80
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=32.77 E-value=4e+02 Score=24.59 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=35.9
Q ss_pred HHHHHHhhhhHHHhhhhh--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-hcCCCCCCCchH
Q 045010 47 VIALIMATPVLVLFSPIL--VPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYV-KGKHPPGADHLD 111 (146)
Q Consensus 47 ~i~L~vaTPLfvifSPVL--VPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~-~g~~p~g~~~~d 111 (146)
...+.+..|++++|+-+. +|+++.+--++.++.+ -.-+|+.+|+ +-..|.-++-.+
T Consensus 227 m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwt---------l~Qq~i~~~~l~~~~P~~~~~~~ 285 (429)
T PRK00247 227 LIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWT---------LIQNIIMYLILERKYPLTDEFKE 285 (429)
T ss_pred HHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHH---------HHHHHHHHHHHHHhcCCCcchHH
Confidence 344456688877665544 6999999988888876 4456655543 445665544333
No 81
>PF02397 Bac_transf: Bacterial sugar transferase; InterPro: IPR003362 This entry represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways. Examples include galactosyl-P-P-undecaprenol synthetase (2.7.8.6 from EC), which transfers galatose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O-polysaccharide biosynthesis; UDP-galactose-lipid carrier transferase, which is involved in the biosynthesis of amylovoran; and galactosyl transferase CpsD, which is essential for assembly of the group B Streptococci (GBS) type III capsular polysaccharide.
Probab=32.13 E-value=66 Score=26.07 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=17.3
Q ss_pred HHHhhhhHHHhhhhhHHHHHHHHH
Q 045010 50 LIMATPVLVLFSPILVPAAIAVFL 73 (146)
Q Consensus 50 L~vaTPLfvifSPVLVPAai~~~l 73 (146)
++++..+++++||+++..++++-+
T Consensus 6 i~~a~~~li~~~Pl~l~iai~i~l 29 (187)
T PF02397_consen 6 IVLALLLLILLSPLFLIIAILIKL 29 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888877666655
No 82
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=31.35 E-value=41 Score=25.69 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhhhHH
Q 045010 39 SGLTLTGTVIALIMATPVLVLFSPILVP 66 (146)
Q Consensus 39 aGlTL~gt~i~L~vaTPLfvifSPVLVP 66 (146)
-|.||.--+|-|.+-.-|+++|-|=+.-
T Consensus 12 kgFTLvEMLiVLlIISiLlLl~iPNltK 39 (107)
T COG4537 12 KGFTLVEMLIVLLIISILLLLFIPNLTK 39 (107)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccchhh
Confidence 4789999999999999999999998765
No 83
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=31.00 E-value=88 Score=31.25 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHhhhhHHHh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045010 48 IALIMATPVLVLF---SPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIY 96 (146)
Q Consensus 48 i~L~vaTPLfvif---SPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~ 96 (146)
...+...|+++.. ++.+-|.++++ +.|++.|-.+-+..+-++.|++
T Consensus 981 Tti~gllPl~l~~G~g~~~~~plai~i---i~GL~~St~ltL~~vP~ly~~~ 1029 (1049)
T PRK15127 981 AFILGVMPLVISSGAGSGAQNAVGTGV---MGGMVTATVLAIFFVPVFFVVV 1029 (1049)
T ss_pred HHHHHHHHHHhcCCCCHHHhcCchhhh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334457888764 46788866654 3466666666666666666654
No 84
>PRK03982 heat shock protein HtpX; Provisional
Probab=29.72 E-value=3.4e+02 Score=22.76 Aligned_cols=31 Identities=6% Similarity=-0.172 Sum_probs=17.9
Q ss_pred HHHHHHHhhcCCCCCCCchHHHHHHHhhhhH
Q 045010 92 LSWIYSYVKGKHPPGADHLDYARTKIADKAR 122 (146)
Q Consensus 92 lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~ 122 (146)
-.|+.+.+.+.+|..+++-.+-++++.+.+.
T Consensus 49 ~~~i~~~~~~~~~l~~~~~p~L~~~v~~la~ 79 (288)
T PRK03982 49 SDKIVLASYNARIVSEEEAPELYRIVERLAE 79 (288)
T ss_pred hHHHHHHhcCCEECChhhhHHHHHHHHHHHH
Confidence 3677777777777655554444444444443
No 85
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=29.63 E-value=2.1e+02 Score=26.26 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q 045010 46 TVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVT 87 (146)
Q Consensus 46 t~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~t 87 (146)
-++.+.++.|+=+++.|+|-+..-.+.-....+-.+|.+|..
T Consensus 151 Piit~li~~~l~~~~~~iwp~i~~~I~~~~~~i~~~g~~g~~ 192 (476)
T TIGR01998 151 PIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAG 192 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 345566778888889999977776666555444445555544
No 86
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.57 E-value=4.6e+02 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhHHHhhhhh
Q 045010 44 TGTVIALIMATPVLVLFSPIL 64 (146)
Q Consensus 44 ~gt~i~L~vaTPLfvifSPVL 64 (146)
.|=+||..++.+|.-+|+-+-
T Consensus 142 gGGIIG~lLs~lL~~LfG~vG 162 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSG 162 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHH
Confidence 478889999888888887644
No 87
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=29.32 E-value=1.6e+02 Score=24.18 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045010 31 IGGTLLFLSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIY 96 (146)
Q Consensus 31 ~gg~LL~LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~ 96 (146)
.+|.+|.+.|+.+.-..+..++ -+.|++-+..- .++...+|+.|..+.+.. -++.|++
T Consensus 188 ~~G~llmf~G~~~~~~~l~~l~------~~~P~lg~l~~-~~~~~~~~~~s~~lsl~~-Ia~aW~~ 245 (248)
T PF07787_consen 188 FIGWLLMFIGFFLLFSPLYTLV------DWIPLLGNLVG-FGLFLVAFIISFSLSLLT-IALAWLF 245 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hhhceeechhh-hHHHHHHHHHHHHHHHHH-HHHhhee
Confidence 5566666777776655543332 23444443211 222223344444444443 3456764
No 88
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=29.06 E-value=1.1e+02 Score=23.16 Aligned_cols=12 Identities=17% Similarity=0.135 Sum_probs=5.7
Q ss_pred HHHHHHHhhcCC
Q 045010 92 LSWIYSYVKGKH 103 (146)
Q Consensus 92 lsW~~~y~~g~~ 103 (146)
+.-+|...||++
T Consensus 94 ~~i~y~a~rg~~ 105 (115)
T PF05915_consen 94 TRIAYYAWRGYK 105 (115)
T ss_pred HHHHHHHHcCCC
Confidence 333444456544
No 89
>PRK01844 hypothetical protein; Provisional
Probab=28.94 E-value=2.1e+02 Score=20.40 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 045010 90 TVLSWIYSYVKGKHPPGA 107 (146)
Q Consensus 90 s~lsW~~~y~~g~~p~g~ 107 (146)
-+--|+-||++. +||-.
T Consensus 24 ~ark~~~k~lk~-NPpin 40 (72)
T PRK01844 24 IARKYMMNYLQK-NPPIN 40 (72)
T ss_pred HHHHHHHHHHHH-CCCCC
Confidence 345678889985 55433
No 90
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=28.66 E-value=1.9e+02 Score=20.30 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=10.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHh
Q 045010 77 GFLVSGGCGVTAITVLSWIYSYV 99 (146)
Q Consensus 77 gfl~sg~~g~tals~lsW~~~y~ 99 (146)
.++..|++|+..+..+.=-++.+
T Consensus 18 l~~~~~~~~~~~l~~~~~~~~~i 40 (181)
T PF12729_consen 18 LLLIVGIVGLYSLSQINQNVEEI 40 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444444444433
No 91
>PF12769 DUF3814: Domain of unknown function (DUF3814); InterPro: IPR024605 This entry represents the C-terminal domain of NAD(P) transhydrogenase, alpha subunit.
Probab=28.55 E-value=1.5e+02 Score=21.84 Aligned_cols=44 Identities=41% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q 045010 37 FLSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVT 87 (146)
Q Consensus 37 ~LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~t 87 (146)
.++|+++.|.++.+.-+ -.++.-+.+.++++++.... .|+|.+|
T Consensus 35 AIsgii~vGa~~~~~~~-----~~~~~~~lg~~Av~~a~iNv--~GGF~VT 78 (87)
T PF12769_consen 35 AISGIIIVGAMIAAGSA-----PSTLAQVLGFIAVFLATINV--VGGFLVT 78 (87)
T ss_pred HHHHHHHHHHHHHHcCC-----CchHHHHHHHHHHHHHHHHH--hhchHHH
Confidence 47888998888865554 34455666666666665443 3555544
No 92
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=28.51 E-value=56 Score=26.47 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhHHHhh
Q 045010 42 TLTGTVIALIMATPVLVLFS 61 (146)
Q Consensus 42 TL~gt~i~L~vaTPLfvifS 61 (146)
.|..|+.||.||.|-.+.++
T Consensus 166 ALitTA~GL~VAIPAli~yn 185 (211)
T TIGR02797 166 ALLATAIGLVAAIPAVVIYN 185 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999877654
No 93
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=28.36 E-value=1.9e+02 Score=19.59 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhc
Q 045010 88 AITVLSWIYSYVKG 101 (146)
Q Consensus 88 als~lsW~~~y~~g 101 (146)
+-..+.|+|.-+-|
T Consensus 39 ~YGF~VWm~Q~~~G 52 (56)
T PF06796_consen 39 GYGFIVWMYQIFFG 52 (56)
T ss_pred HHHHHHHHHHHHcC
Confidence 34556799998876
No 94
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.06 E-value=3.5e+02 Score=24.01 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045010 31 IGGTLLFLSGLTLTGTVI 48 (146)
Q Consensus 31 ~gg~LL~LaGlTL~gt~i 48 (146)
+|-++|.+.|+..+-++.
T Consensus 181 vGSA~LT~IGLaAAKaAA 198 (295)
T TIGR01478 181 LSSALLGNIGIAAAKTAA 198 (295)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455666666766665443
No 95
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=28.04 E-value=3.5e+02 Score=22.98 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhHHHhhhhhHHHHHHHHH
Q 045010 45 GTVIALIMATPVLVLFSPILVPAAIAVFL 73 (146)
Q Consensus 45 gt~i~L~vaTPLfvifSPVLVPAai~~~l 73 (146)
.++..++...|+++.-+|.+-|.+++...
T Consensus 234 TslTTl~~~l~L~~~g~~~i~~fa~~l~~ 262 (289)
T PRK13022 234 TSLTTLLVVLALYLFGGGTLHDFALALLI 262 (289)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 34444455677877777888887765544
No 96
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=28.02 E-value=3.5e+02 Score=26.73 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCC--------chHHH
Q 045010 42 TLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGAD--------HLDYA 113 (146)
Q Consensus 42 TL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~--------~~d~A 113 (146)
.+.+++..++.+.|||++-++.+-|.++++.+.+..-+-..-+..-.+ +.|.+|+.+.+.-.... ++|..
T Consensus 379 Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~dF~ 456 (758)
T PRK13023 379 IVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL--IAQWVRTAKPKEVPKRRLKLVPTVTHIPFM 456 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCccccchhhhhhcccCCCcchh
Q ss_pred HHH
Q 045010 114 RTK 116 (146)
Q Consensus 114 r~r 116 (146)
|.|
T Consensus 457 ~~r 459 (758)
T PRK13023 457 RLQ 459 (758)
T ss_pred hHH
No 97
>COG1289 Predicted membrane protein [Function unknown]
Probab=27.73 E-value=3.9e+02 Score=25.13 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhHHHhhhh
Q 045010 44 TGTVIALIMATPVLVLFSPI 63 (146)
Q Consensus 44 ~gt~i~L~vaTPLfvifSPV 63 (146)
.||++|+.++..++.+.-|.
T Consensus 408 ~GTllg~~~g~~~l~~~~p~ 427 (674)
T COG1289 408 LGTLLGLLLGLLVLLLLLPL 427 (674)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34555555544444444333
No 98
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=27.63 E-value=2.1e+02 Score=28.62 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHhhhhHHHh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCC
Q 045010 51 IMATPVLVLF---SPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGA 107 (146)
Q Consensus 51 ~vaTPLfvif---SPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~ 107 (146)
+-..|+.+-. ++.+-|.++++. .|+++|-.+- +-.+=++|.+++++++..|
T Consensus 981 ~gllPlal~~g~g~~~~~pla~~ii---~GL~~St~lt---L~vvP~ly~~~~~~~~~~~ 1034 (1037)
T PRK10555 981 FGVLPMATSTGAGSGSQHAVGTGVM---GGMISATILA---IFFVPLFFVLVRRRFPLKP 1034 (1037)
T ss_pred HHHHHHHHhcCCChHHhcccHHHHH---HHHHHHHHHH---HHHHHHHHHHHHhhcCCCC
Confidence 3446887642 478888766542 3444443333 5556677777777776544
No 99
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=27.56 E-value=77 Score=18.92 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=12.9
Q ss_pred hHHHHHHHhhhhHHhhHHHHHH
Q 045010 110 LDYARTKIADKARDMTERAKEY 131 (146)
Q Consensus 110 ~d~Ar~ri~d~a~~v~~kake~ 131 (146)
+..++.++.++....+||-||+
T Consensus 4 lrk~~eKigeklkkIGQkIKDf 25 (28)
T PF12153_consen 4 LRKGGEKIGEKLKKIGQKIKDF 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667766665555555544
No 100
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=27.24 E-value=3.3e+02 Score=21.80 Aligned_cols=25 Identities=4% Similarity=0.062 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhc-CCCCCCCchHHHH
Q 045010 90 TVLSWIYSYVKG-KHPPGADHLDYAR 114 (146)
Q Consensus 90 s~lsW~~~y~~g-~~p~g~~~~d~Ar 114 (146)
....+++|.++. -+-...+..|.||
T Consensus 136 ~~~~~~~~~~~~~l~~i~~~~~eaa~ 161 (250)
T TIGR01097 136 HTVGFLGKLFAEAIEEVDPGPVEALR 161 (250)
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 344555555543 2333445555555
No 101
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=27.03 E-value=78 Score=20.21 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=15.3
Q ss_pred chHHHHHHHhhhhHHhhHHH
Q 045010 109 HLDYARTKIADKARDMTERA 128 (146)
Q Consensus 109 ~~d~Ar~ri~d~a~~v~~ka 128 (146)
+++..|.+|+++..++.++.
T Consensus 11 dIe~tR~~La~tvd~L~~r~ 30 (49)
T PF12277_consen 11 DIERTRAELAETVDELAARL 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 46778888888888776654
No 102
>PRK10490 sensor protein KdpD; Provisional
Probab=26.64 E-value=2.7e+02 Score=27.28 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=3.8
Q ss_pred HHHHhh
Q 045010 95 IYSYVK 100 (146)
Q Consensus 95 ~~~y~~ 100 (146)
+||||-
T Consensus 458 ~~nfFF 463 (895)
T PRK10490 458 SFDLFF 463 (895)
T ss_pred HHHhee
Confidence 567763
No 103
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=1.4e+02 Score=22.76 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=24.3
Q ss_pred CCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHhhh
Q 045010 107 ADHLDYARTKIADKARDMTERAKEYGQYVQQKAQEAT 143 (146)
Q Consensus 107 ~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~a~ 143 (146)
-|+.+..|.|+...-++..++-.+.+..+..++|++.
T Consensus 36 ~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~ 72 (104)
T COG4575 36 GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAA 72 (104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4567777777776666666666666666666666554
No 104
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=26.52 E-value=81 Score=24.89 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhhHH
Q 045010 43 LTGTVIALIMATPVLV 58 (146)
Q Consensus 43 L~gt~i~L~vaTPLfv 58 (146)
|..|+.||++|.|-.+
T Consensus 103 LitTa~GL~VAIpali 118 (138)
T TIGR02805 103 LKATALGLLVAIPSLV 118 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 105
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=26.04 E-value=6.1e+02 Score=24.56 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHh--hhhhHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHhhcC
Q 045010 32 GGTLLFLSGLTLTGTVIALIMATPVLVLF--SPILVPAAIAVFLATVGFLV-------SGGCGVTAITVLSWIYSYVKGK 102 (146)
Q Consensus 32 gg~LL~LaGlTL~gt~i~L~vaTPLfvif--SPVLVPAai~~~l~~~gfl~-------sg~~g~tals~lsW~~~y~~g~ 102 (146)
.|..+-=+---+.||++|-+++.=+..+| .|++.=.++.+.+.+..+.+ |=+|.+++.+...=.+-.. .
T Consensus 58 ~G~v~~K~~~Ri~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~iI~~~~~--~ 135 (652)
T PRK10631 58 SGAIRYRGMLRIIGTFIGCIAALVIIIATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTALIIVITIQ--P 135 (652)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcc--C
Confidence 44444444455677777777766666666 47776555544443333332 2266666665554444432 2
Q ss_pred CCCCCCchHHHHHHHhhh
Q 045010 103 HPPGADHLDYARTKIADK 120 (146)
Q Consensus 103 ~p~g~~~~d~Ar~ri~d~ 120 (146)
+|. +-.|.|-.|+.|.
T Consensus 136 ~p~--~~f~~A~~R~~Ei 151 (652)
T PRK10631 136 EPL--LTPQFAVERCSEI 151 (652)
T ss_pred Cch--HHHHHHHHHHHHH
Confidence 442 2256666666653
No 106
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=25.89 E-value=18 Score=32.19 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhcCC
Q 045010 90 TVLSWIYSYVKGKH 103 (146)
Q Consensus 90 s~lsW~~~y~~g~~ 103 (146)
-++.|+|||++.+.
T Consensus 314 ~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 314 ISLAWLYRTFRRRQ 327 (361)
T ss_pred HHHHhheeehHHHH
Confidence 35679999987543
No 107
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.72 E-value=2.3e+02 Score=19.50 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHhhHHHHHHhHHHHHHhHhh
Q 045010 122 RDMTERAKEYGQYVQQKAQEA 142 (146)
Q Consensus 122 ~~v~~kake~Gq~iq~ka~~a 142 (146)
.++-+++++.-+++++|.++.
T Consensus 50 ~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 50 NDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 334445555556666665543
No 108
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=25.54 E-value=1.6e+02 Score=18.85 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 045010 84 CGVTAITVLSWIYSYVKGKHPPGADHLDYARTKI 117 (146)
Q Consensus 84 ~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri 117 (146)
+|+.++..+.|-.| +|+- |.+|...+||
T Consensus 13 l~~~~l~~f~Wavk--~GQf----dD~e~~a~ri 40 (45)
T PF03597_consen 13 LGLIALAAFLWAVK--SGQF----DDLEGPAHRI 40 (45)
T ss_pred HHHHHHHHHHHHHc--cCCC----CCCcchHhhh
Confidence 34555788889887 4432 3455555565
No 109
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.53 E-value=96 Score=27.51 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHhhhhh
Q 045010 27 TAATIGGTLLFLSG-LTLTGTVIALIMATPVLVLFSPIL 64 (146)
Q Consensus 27 ~~~~~gg~LL~LaG-lTL~gt~i~L~vaTPLfvifSPVL 64 (146)
......++-|+|+| ++....++|++++.-+.++|.|+.
T Consensus 172 l~~ll~~~Wlllsg~~s~~~l~~G~v~~~~v~~~~~~~~ 210 (357)
T PRK12652 172 LFGASFGFYLLLGDPLYWFDLLTGAVTALIVAVLLAHVT 210 (357)
T ss_pred HHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhcccc
Confidence 33556677788888 888888888888888888887753
No 110
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=25.47 E-value=2.8e+02 Score=26.79 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 045010 40 GLTLTGTVIALIMATPVLVLFSPILVPAAIAVFLATVGFLVSG 82 (146)
Q Consensus 40 GlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~l~~~gfl~sg 82 (146)
.-++.+++.-++++.|||.+=+..+=|.++++.+.+..-+.++
T Consensus 540 ~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftA 582 (604)
T PRK12933 540 STIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTG 582 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHH
Confidence 3466777888899999999988877777777666554443333
No 111
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=25.29 E-value=2.2e+02 Score=22.16 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=27.2
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045010 10 QALYEKAPSTPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATP 55 (146)
Q Consensus 10 ~~~~~~~Pss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTP 55 (146)
+++++..++..+++.-... .+|+.||++=|. ...++|+.+-.|
T Consensus 59 ~~~~~G~~p~~~l~~~~~~-~~gg~LLi~PGf--~tD~~Gllll~P 101 (148)
T PRK11463 59 RKLARGELPAAELLDGLLL-AVAGVLLLLPGF--VTDILGLLLLLP 101 (148)
T ss_pred HHHHCCCCcHHHHHHhHHH-HHHHHHHHccHH--HHHHHHHHHHcc
Confidence 3445555666666655443 577777777775 467777776555
No 112
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=25.06 E-value=1.6e+02 Score=23.29 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhHHhh
Q 045010 111 DYARTKIADKARDMT 125 (146)
Q Consensus 111 d~Ar~ri~d~a~~v~ 125 (146)
|.-...+.|.|++++
T Consensus 68 D~~daEI~dgAGe~G 82 (137)
T PF12270_consen 68 DREDAEIADGAGELG 82 (137)
T ss_pred cccccccccCCCCcC
Confidence 334456666665543
No 113
>PRK14402 membrane protein; Provisional
Probab=24.97 E-value=3.6e+02 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHhhhhHHHhhhhhHHHHHHHHHHH---HHHHhhhhh
Q 045010 50 LIMATPVLVLFSPILVPAAIAVFLAT---VGFLVSGGC 84 (146)
Q Consensus 50 L~vaTPLfvifSPVLVPAai~~~l~~---~gfl~sg~~ 84 (146)
.+.+.-.++.++|.+....+.+++.+ +...+-|.+
T Consensus 107 vAt~~G~~l~l~p~~~l~~~~v~~i~~~itr~vSl~Si 144 (198)
T PRK14402 107 VATSFGTLLFLDPVLALLTFPVGVACMWLTRFVSAGSM 144 (198)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667888887777766665 455555553
No 114
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=24.63 E-value=1.9e+02 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhhhH
Q 045010 84 CGVTAITVLSWIYSYVKGKHPPGADHLDYARTKIADKAR 122 (146)
Q Consensus 84 ~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~ 122 (146)
.++.++..-.|+++++.. +|+|.++|.+--+.|+|.|+
T Consensus 10 ~~~~gl~~a~~~~~~v~~-~~~G~~~M~~Ia~~I~eGA~ 47 (697)
T TIGR01104 10 CAVIGIAYAVLQWVWVSR-VKLGTAKMAEIQQAISEGAT 47 (697)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHH
Confidence 345556667788888874 56677666666666665553
No 115
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=24.38 E-value=25 Score=30.89 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 045010 62 PILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKH 103 (146)
Q Consensus 62 PVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~ 103 (146)
.+|||-+|.+-|+|+|++. |||.|..|
T Consensus 229 ~lLVPSiILVLLaVGGLLf---------------Yr~rrRs~ 255 (285)
T PF05337_consen 229 YLLVPSIILVLLAVGGLLF---------------YRRRRRSH 255 (285)
T ss_dssp ------------------------------------------
T ss_pred cccccchhhhhhhccceee---------------eccccccc
Confidence 5789999999999988873 78777654
No 116
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=24.37 E-value=1.4e+02 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=18.5
Q ss_pred hHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHh
Q 045010 110 LDYARTKIADKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 110 ~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
++.+|.|+.+.-..+.+++|+.-..--+.++|
T Consensus 50 Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e 81 (104)
T COG4575 50 LKEARDRLGDTGDAVVQRSKAAADATDDYVRE 81 (104)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 56666666666666666666665444444433
No 117
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=24.18 E-value=5.9e+02 Score=25.13 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHH---hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCC-chHHHH
Q 045010 39 SGLTLTGTVIALIMATPVLVL---FSPILVPAAIAVFLATVGFLVSGGCGVTAITVLSWIYSYVKGKHPPGAD-HLDYAR 114 (146)
Q Consensus 39 aGlTL~gt~i~L~vaTPLfvi---fSPVLVPAai~~~l~~~gfl~sg~~g~tals~lsW~~~y~~g~~p~g~~-~~d~Ar 114 (146)
+.-.+++|+.-+++..|++.+ ....+-|.++++.++...-+ +.++..+=+++.++-..++...+ +.....
T Consensus 432 ~~~i~~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sl------lval~~~P~l~~~~l~~~~~~~~~~~~~~~ 505 (1021)
T PF00873_consen 432 APPILASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASL------LVALTLVPALAALFLKPKKKSSKKRFFSKF 505 (1021)
T ss_dssp HHHHHHHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHH------HHHHTTHHHHHHHCS----TT-CCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhhhhhccccccccccccccc
Confidence 344566777777889999752 23455555554444432222 23355555555554332222222 344445
Q ss_pred HHHhhhh
Q 045010 115 TKIADKA 121 (146)
Q Consensus 115 ~ri~d~a 121 (146)
+|.-++.
T Consensus 506 ~~~~~~l 512 (1021)
T PF00873_consen 506 DRFFDRL 512 (1021)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 5554443
No 118
>PRK10132 hypothetical protein; Provisional
Probab=24.02 E-value=1.3e+02 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=13.6
Q ss_pred CchHHHHHHHhhhhHHhhHHHHHHh
Q 045010 108 DHLDYARTKIADKARDMTERAKEYG 132 (146)
Q Consensus 108 ~~~d~Ar~ri~d~a~~v~~kake~G 132 (146)
++.+.+|.|+.+.-++..++..+..
T Consensus 41 ~~~~~lR~r~~~~L~~ar~~l~~~~ 65 (108)
T PRK10132 41 GEAEAARRKAQALLKETRARMHGRT 65 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4456666666555555554444433
No 119
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=23.59 E-value=1.9e+02 Score=23.21 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhHHHHHHHH
Q 045010 29 ATIGGTLLFLSGLTLTGTVIALIMATPVLVLFSPILVPAAIAVF 72 (146)
Q Consensus 29 ~~~gg~LL~LaGlTL~gt~i~L~vaTPLfvifSPVLVPAai~~~ 72 (146)
..+-|++|+.+|++|.=++=+=.-..+.++ ++||+|-..
T Consensus 68 l~VlGiiLviagl~l~fil~~~lg~naf~~-----~IPAviGlv 106 (150)
T PF05745_consen 68 LVVLGIILVIAGLALTFILHSQLGNNAFLF-----IIPAVIGLV 106 (150)
T ss_pred HHHHHHHHHHHHHHHHhhehhhhcCccchh-----hHHHHHHHH
Confidence 345566788899998866666666666544 678876543
No 120
>COG4241 Predicted membrane protein [Function unknown]
Probab=23.35 E-value=1.1e+02 Score=27.29 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=27.0
Q ss_pred hhhhHH---HHHHHHHHHHHHh-------hcCCCCCCCchHHHHHHHhhhh
Q 045010 81 SGGCGV---TAITVLSWIYSYV-------KGKHPPGADHLDYARTKIADKA 121 (146)
Q Consensus 81 sg~~g~---tals~lsW~~~y~-------~g~~p~g~~~~d~Ar~ri~d~a 121 (146)
+.+|-+ +..++.+|++||. |+- ++-+|-+.+.|+++.+.-
T Consensus 95 e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~i-npv~~a~~~~Rqsl~~a~ 144 (314)
T COG4241 95 EKAFAIMSGASTAAMIWIINFYFPLSIVIRII-NPVDDAVVYLRQSLNAAI 144 (314)
T ss_pred cchhhHHhhHHHHHHHHHHHHHHHhhhhhccc-CCcHHHHHHHHhhhHHHH
Confidence 344444 4678999999753 433 445778899999886543
No 121
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=23.21 E-value=97 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.585 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhHHHhh
Q 045010 42 TLTGTVIALIMATPVLVLFS 61 (146)
Q Consensus 42 TL~gt~i~L~vaTPLfvifS 61 (146)
.|..|+.||+||.|-++.++
T Consensus 170 ALitTa~GL~vAIPali~yn 189 (215)
T TIGR02796 170 ALIATAIGLFAAIPAVIAYN 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999888776554
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.10 E-value=1.8e+02 Score=20.22 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=9.0
Q ss_pred HHHHHHHHhhcCCCC
Q 045010 91 VLSWIYSYVKGKHPP 105 (146)
Q Consensus 91 ~lsW~~~y~~g~~p~ 105 (146)
+--++-||++...|.
T Consensus 18 ar~~~~k~l~~NPpi 32 (64)
T PF03672_consen 18 ARKYMEKQLKENPPI 32 (64)
T ss_pred HHHHHHHHHHHCCCC
Confidence 445677788754443
No 123
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.75 E-value=1.8e+02 Score=21.77 Aligned_cols=32 Identities=22% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 045010 68 AIAVFLATVGFLVSGGCGVTAITVLSWIYSYV 99 (146)
Q Consensus 68 ai~~~l~~~gfl~sg~~g~tals~lsW~~~y~ 99 (146)
.+..+|.+....-|+-+|+.+.|.+-=+..-+
T Consensus 45 ~~~~Sl~~~~~~~S~llgv~g~s~lWsI~Elf 76 (94)
T PF14898_consen 45 CIIASLFVSNVIWSALLGVLGFSCLWSIGELF 76 (94)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHhHHHHH
Confidence 34567777788888999999988876555444
No 124
>PLN02769 Probable galacturonosyltransferase
Probab=22.59 E-value=35 Score=32.93 Aligned_cols=32 Identities=41% Similarity=0.512 Sum_probs=22.1
Q ss_pred HhhhhHHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 045010 52 MATPVLVLFSPILVPAAIAVFLATVGFLVSGGC 84 (146)
Q Consensus 52 vaTPLfvifSPVLVPAai~~~l~~~gfl~sg~~ 84 (146)
++.+-+++|| +|||.++..++.=.||-+.+--
T Consensus 21 ~~v~~lv~~s-~l~pl~~l~~~~~~~~~~~~~~ 52 (629)
T PLN02769 21 IAVLALVLCS-MLVPLAFLLGLHHNGFHSTGRV 52 (629)
T ss_pred HHHHHHHHHH-HHHHHHHHhccccccCCccccc
Confidence 3444455555 8999999999877788775433
No 125
>PF05532 CsbD: CsbD-like; InterPro: IPR008462 CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor []. The role of CsbD in stress response is unclear.; PDB: 1YWW_A 1RYK_A.
Probab=22.43 E-value=98 Score=20.20 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=6.7
Q ss_pred hHHHHHHHhhhhHHh
Q 045010 110 LDYARTKIADKARDM 124 (146)
Q Consensus 110 ~d~Ar~ri~d~a~~v 124 (146)
.++++.++.+.++.+
T Consensus 7 ~~~~kGk~Ke~~G~~ 21 (53)
T PF05532_consen 7 ADQAKGKVKEAAGKL 21 (53)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHhhHHHHHHHhc
Confidence 444444444444433
No 126
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.31 E-value=2.2e+02 Score=18.89 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 045010 84 CGVTAITVLSWIYSYVKGKHPPGADHLDYARTKI 117 (146)
Q Consensus 84 ~g~tals~lsW~~~y~~g~~p~g~~~~d~Ar~ri 117 (146)
+|+.++..+.|-.| +|+ -|.+|...+|+
T Consensus 14 l~~~~l~~f~Wavk--~GQ----fDDle~~a~ri 41 (51)
T TIGR00847 14 LGGVGLVAFLWSLK--SGQ----YDDLKGAAWRI 41 (51)
T ss_pred HHHHHHHHHHHHHc--cCC----CCCCccHHHHH
Confidence 35556788899887 443 24455555665
No 127
>PRK09946 hypothetical protein; Provisional
Probab=22.20 E-value=1.7e+02 Score=25.59 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 045010 90 TVLSWIYSYVKGKHPPGADHLDYARTKI 117 (146)
Q Consensus 90 s~lsW~~~y~~g~~p~g~~~~d~Ar~ri 117 (146)
..-.|+||+|.+++|-|.+..|-.+.-+
T Consensus 12 ~~~~~~yRWFlr~fp~Gg~Y~~v~dALv 39 (270)
T PRK09946 12 RVGAVMYRWFLRHFPRGGSYADIHHALI 39 (270)
T ss_pred CcchhHHHHHHHhCCCCCcHHHHHHHHH
Confidence 3457999999999999999877766544
No 128
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=22.05 E-value=1.2e+02 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHHHHHHHh--hcCCCCCCCchHHHHHHHhhhhHHhhHHHHHHh--HHHHHHhH
Q 045010 89 ITVLSWIYSYV--KGKHPPGADHLDYARTKIADKARDMTERAKEYG--QYVQQKAQ 140 (146)
Q Consensus 89 ls~lsW~~~y~--~g~~p~g~~~~d~Ar~ri~d~a~~v~~kake~G--q~iq~ka~ 140 (146)
.-+++|.++++ |..+..|++-.|.-|..+-+...+=-+.=++++ +|||+|.+
T Consensus 116 ~~~l~~~~~~l~~rd~~l~g~~sY~~IR~~L~eL~~~~e~~R~~I~v~~YIq~RT~ 171 (207)
T PRK11832 116 FYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTR 171 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCHHHHhhccHHHHHHHhcc
Confidence 35788887755 556788999999999888777643222223333 88998754
No 129
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=22.00 E-value=2.8e+02 Score=19.14 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHH
Q 045010 18 STPLAVKFLTAATIG 32 (146)
Q Consensus 18 ss~qvl~~~~~~~~g 32 (146)
|.+|++.++.++.++
T Consensus 18 T~RQl~~l~~~~~~~ 32 (93)
T PF12666_consen 18 TLRQLICLAIGALVG 32 (93)
T ss_pred CHHHHHHHHHHHHHH
Confidence 667777666544444
No 130
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=22.00 E-value=2.3e+02 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhc
Q 045010 88 AITVLSWIYSYVKG 101 (146)
Q Consensus 88 als~lsW~~~y~~g 101 (146)
+-..+.|+|.-+.|
T Consensus 26 ~YGF~vWm~Q~~~G 39 (42)
T TIGR02973 26 GYGFAVWMYQILAG 39 (42)
T ss_pred HHHHHHHHHHHhcC
Confidence 34556799998865
No 131
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=21.78 E-value=6.3e+02 Score=24.21 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=33.9
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045010 11 ALYEKAPSTPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATPVLVL 59 (146)
Q Consensus 11 ~~~~~~Pss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTPLfvi 59 (146)
+-.+.+|+..++.-.+.....+.+||...|+.-.=|.. .+.+.|..++
T Consensus 436 ~~~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~-ii~alPF~~v 483 (537)
T COG1292 436 RGGEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAA-IITALPFSLV 483 (537)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHccHHHH
Confidence 33567788888888888888999999999965554443 2455665543
No 132
>PRK10132 hypothetical protein; Provisional
Probab=21.51 E-value=1.8e+02 Score=21.81 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=17.7
Q ss_pred CchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHh
Q 045010 108 DHLDYARTKIADKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 108 ~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
+.++.+|.|+.|.-. +.+++|+......+.+||
T Consensus 52 ~~L~~ar~~l~~~~~-~~~~~~~a~~~~~~~V~~ 84 (108)
T PRK10132 52 ALLKETRARMHGRTR-VQQAARDAVGCADTFVRE 84 (108)
T ss_pred HHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHh
Confidence 356777777765333 445556655444444443
No 133
>COG1289 Predicted membrane protein [Function unknown]
Probab=21.13 E-value=7e+02 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045010 20 PLAVKFLTAATIGGTLLFLSGLTLTG 45 (146)
Q Consensus 20 ~qvl~~~~~~~~gg~LL~LaGlTL~g 45 (146)
..+++.+..+++|..++.+..-...+
T Consensus 405 ~ri~GTllg~~~g~~~l~~~~p~~~~ 430 (674)
T COG1289 405 QRILGTLLGLLLGLLVLLLLLPLIPG 430 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Confidence 34666666666766666665544444
No 134
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=20.46 E-value=2.5e+02 Score=22.92 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhhH
Q 045010 44 TGTVIALIMATPVL 57 (146)
Q Consensus 44 ~gt~i~L~vaTPLf 57 (146)
+|.++|++.+.+.+
T Consensus 31 vGlliG~l~~~~~~ 44 (235)
T PF02654_consen 31 VGLLIGLLAALVAW 44 (235)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554444
No 135
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=20.45 E-value=2.6e+02 Score=25.66 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=31.3
Q ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 045010 9 TQALYEKAPSTPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATPVLVLFSP 62 (146)
Q Consensus 9 ~~~~~~~~Pss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTPLfvifSP 62 (146)
.|+.||..-+-++.+-- -|+++.-+++.|+...|++.=+|-
T Consensus 187 sQRvQEDTmrFSstlE~-------------LGvsfi~siMTLiaFlPvL~~ls~ 227 (405)
T COG1133 187 SQRVQEDTMRFSSTLEN-------------LGVSFINAIMTLIAFLPVLFTLSA 227 (405)
T ss_pred HHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677766665555443 388999999999999999998884
No 136
>PF14219 DUF4328: Domain of unknown function (DUF4328)
Probab=20.38 E-value=1.9e+02 Score=22.16 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhh
Q 045010 75 TVGFLVSGGCGVTAITVLSWIYSYVK 100 (146)
Q Consensus 75 ~~gfl~sg~~g~tals~lsW~~~y~~ 100 (146)
..+.+....+-++++..+.|+||-.+
T Consensus 25 ~~~~~~~~~~v~~~V~~l~Wl~rar~ 50 (171)
T PF14219_consen 25 LLGLLALLLFVAAAVVFLVWLYRARA 50 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677888999999999543
No 137
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=20.34 E-value=3.8e+02 Score=20.05 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=26.7
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045010 10 QALYEKAPSTPLAVKFLTAATIGGTLLFLSGLTLTGTVIALIMATP 55 (146)
Q Consensus 10 ~~~~~~~Pss~qvl~~~~~~~~gg~LL~LaGlTL~gt~i~L~vaTP 55 (146)
+++++...+..+++. -....+|+.||.+=|. ...++|+.+-.|
T Consensus 55 ~~~~~g~~p~~~~~~-~~~~~~gg~LLi~PGf--lTD~lGllLllP 97 (119)
T PF04186_consen 55 QSLRQGEMPGEELLD-GALLAVGGVLLIIPGF--LTDILGLLLLLP 97 (119)
T ss_pred HHHHcCCccHHHHHH-HHHHHHHHHHHHhhHH--HHHHHHHHHHhh
Confidence 444555555666665 4455677778888775 456777665444
No 138
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=20.21 E-value=5e+02 Score=21.43 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhh------hhHHHhhhhhHHHHHHHHHHHHHHHhh
Q 045010 39 SGLTLTGTVIALIMAT------PVLVLFSPILVPAAIAVFLATVGFLVS 81 (146)
Q Consensus 39 aGlTL~gt~i~L~vaT------PLfvifSPVLVPAai~~~l~~~gfl~s 81 (146)
-|+++.||+.+-.... =+-++.-|+.||..|...-++...+.+
T Consensus 133 ~~Ls~igtl~aALt~g~r~~~~Ll~lL~lPl~vPvLIfg~~a~~~~~~G 181 (211)
T TIGR01190 133 PALSFLGAIGAALTVGLKRGGLLLSLLVLPLYIPVLIFGSAAIQAAAEG 181 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555554433222 233667799999888877777766553
Done!