Query 045010
Match_columns 146
No_of_seqs 104 out of 191
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lyp_A CAP18; lipopolysacchari 69.4 6.4 0.00022 23.0 3.6 25 115-139 4-28 (32)
2 2lx0_A Membrane fusion protein 67.5 8.8 0.0003 22.4 3.9 16 86-101 16-31 (32)
3 1eze_A Cholesteryl ester trans 46.3 11 0.00037 23.0 1.8 23 115-137 9-31 (38)
4 2l8s_A Integrin alpha-1; trans 30.5 1.1E+02 0.0038 19.7 5.1 29 84-112 21-49 (54)
5 2l2t_A Receptor tyrosine-prote 28.4 98 0.0033 19.1 4.2 22 79-100 16-37 (44)
6 2k1k_A Ephrin type-A receptor 21.5 1E+02 0.0035 18.2 3.2 20 77-96 15-34 (38)
7 1xwj_B Talin, metavinculin; ce 19.5 44 0.0015 18.2 1.2 20 114-133 3-22 (26)
8 3qc0_A Sugar isomerase; TIM ba 18.8 1.5E+02 0.005 21.8 4.4 32 101-132 105-136 (275)
9 1ryk_A Protein YJBJ; alpha pro 18.6 99 0.0034 20.0 3.0 28 110-137 36-63 (69)
10 4av3_A K(+)-stimulated pyropho 16.8 1.3E+02 0.0045 28.3 4.4 34 88-122 23-56 (735)
No 1
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=69.39 E-value=6.4 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHhhhhHHhhHHHHHHhHHHHHHh
Q 045010 115 TKIADKARDMTERAKEYGQYVQQKA 139 (146)
Q Consensus 115 ~ri~d~a~~v~~kake~Gq~iq~ka 139 (146)
.|+..--...+||-|..||.||+-.
T Consensus 4 krlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444556888899999999854
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=67.45 E-value=8.8 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.636 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 045010 86 VTAITVLSWIYSYVKG 101 (146)
Q Consensus 86 ~tals~lsW~~~y~~g 101 (146)
++.++.-.|+++|+.-
T Consensus 16 ltflafgfwlfkylqk 31 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4557778899999863
No 3
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=46.31 E-value=11 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHhhhhHHhhHHHHHHhHHHHH
Q 045010 115 TKIADKARDMTERAKEYGQYVQQ 137 (146)
Q Consensus 115 ~ri~d~a~~v~~kake~Gq~iq~ 137 (146)
.|+.+-...+.||+|+.-+.|++
T Consensus 9 dkvke~g~tl~eK~k~~~~~i~~ 31 (38)
T 1eze_A 9 DKLKEFGNTLEDKAWEVINRIKQ 31 (38)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777777777788877777664
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.53 E-value=1.1e+02 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCchHH
Q 045010 84 CGVTAITVLSWIYSYVKGKHPPGADHLDY 112 (146)
Q Consensus 84 ~g~tals~lsW~~~y~~g~~p~g~~~~d~ 112 (146)
+-++.+..+.|-..+|+.+.|...+.+|.
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~~~~~~~~ 49 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKKKMEKLEH 49 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCCCCC---
T ss_pred HHHHHHHHHHHHcCcccCCCcchhhHHhh
Confidence 35666788999999999988877666664
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.39 E-value=98 Score=19.08 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=14.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHhh
Q 045010 79 LVSGGCGVTAITVLSWIYSYVK 100 (146)
Q Consensus 79 l~sg~~g~tals~lsW~~~y~~ 100 (146)
+.+|-+++..+..+.|+|-..|
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHHhhhh
Confidence 3345666777777777776444
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.55 E-value=1e+02 Score=18.21 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=9.1
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 045010 77 GFLVSGGCGVTAITVLSWIY 96 (146)
Q Consensus 77 gfl~sg~~g~tals~lsW~~ 96 (146)
|...+...|+..+..+.|.+
T Consensus 15 GiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHH
Confidence 33444444555455555433
No 7
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=19.49 E-value=44 Score=18.19 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=13.7
Q ss_pred HHHHhhhhHHhhHHHHHHhH
Q 045010 114 RTKIADKARDMTERAKEYGQ 133 (146)
Q Consensus 114 r~ri~d~a~~v~~kake~Gq 133 (146)
++.+.|.++.|.||-.++=+
T Consensus 3 q~el~~~~r~v~ekV~~vla 22 (26)
T 1xwj_B 3 KKELIESARKVSEKVSHVLA 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677778778777766543
No 8
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=18.83 E-value=1.5e+02 Score=21.78 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=23.4
Q ss_pred cCCCCCCCchHHHHHHHhhhhHHhhHHHHHHh
Q 045010 101 GKHPPGADHLDYARTKIADKARDMTERAKEYG 132 (146)
Q Consensus 101 g~~p~g~~~~d~Ar~ri~d~a~~v~~kake~G 132 (146)
|..|.+....+.+..++.+.-+++.++++++|
T Consensus 105 g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g 136 (275)
T 3qc0_A 105 GGLPGGSKNIDAARRMVVEGIAAVLPHARAAG 136 (275)
T ss_dssp BCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444434567788888888888889988887
No 9
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=18.60 E-value=99 Score=19.97 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=15.0
Q ss_pred hHHHHHHHhhhhHHhhHHHHHHhHHHHH
Q 045010 110 LDYARTKIADKARDMTERAKEYGQYVQQ 137 (146)
Q Consensus 110 ~d~Ar~ri~d~a~~v~~kake~Gq~iq~ 137 (146)
.|++..+++++.++++|.+++....+..
T Consensus 36 ~~q~~Gk~q~~~g~~kd~~~~~~d~~~~ 63 (69)
T 1ryk_A 36 RDQLVGKIQERYGYQKDQAEKEVVDWET 63 (69)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444433
No 10
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=16.77 E-value=1.3e+02 Score=28.29 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCchHHHHHHHhhhhH
Q 045010 88 AITVLSWIYSYVKGKHPPGADHLDYARTKIADKAR 122 (146)
Q Consensus 88 als~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~ 122 (146)
++..-.|+|+++. ++|.|.++|.+-.+.|+|.|.
T Consensus 23 ~l~~a~~~~~~v~-~~~~G~~~M~eIa~~I~eGA~ 56 (735)
T 4av3_A 23 ALGFAAANFAAVV-RKPEGTERMKEISSYIRSGAD 56 (735)
T ss_dssp HHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHH
Confidence 3444556677765 578888888777777777664
Done!