Query 045010
Match_columns 146
No_of_seqs 104 out of 191
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 60.6 5.9 0.00043 22.1 3.7 22 31-52 5-26 (34)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 40.9 5.1 0.00037 23.4 1.3 31 101-132 1-32 (47)
3 d2vcha1 c.87.1.10 (A:6-476) Hy 24.2 23 0.0017 25.7 2.8 36 106-141 410-447 (471)
4 d1di0a_ c.16.1.1 (A:) Lumazine 22.7 20 0.0015 25.1 2.1 32 106-137 107-138 (148)
5 d2acva1 c.87.1.10 (A:3-463) Tr 22.4 19 0.0014 26.0 2.0 35 107-141 410-444 (461)
6 d1r2ja1 a.29.3.1 (A:213-365) P 20.2 84 0.0061 20.3 4.9 41 81-122 19-61 (153)
7 d1qkra_ a.24.9.1 (A:) Vinculin 18.4 25 0.0018 25.4 1.9 43 90-133 48-90 (181)
8 d2o7ta2 a.121.1.1 (A:79-188) T 18.3 36 0.0026 22.1 2.5 27 106-132 34-60 (110)
9 d3dhwa1 f.58.1.1 (A:6-208) D-m 13.7 1.7E+02 0.013 19.2 6.8 16 41-56 14-29 (203)
10 d1pv7a_ f.38.1.2 (A:) Lactose 13.4 1.8E+02 0.013 19.3 7.0 11 110-120 406-416 (417)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=60.64 E-value=5.9 Score=22.10 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045010 31 IGGTLLFLSGLTLTGTVIALIM 52 (146)
Q Consensus 31 ~gg~LL~LaGlTL~gt~i~L~v 52 (146)
+.|+-+...|+||.|..||+++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4566778889999999888765
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=40.90 E-value=5.1 Score=23.44 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.3
Q ss_pred cCCCC-CCCchHHHHHHHhhhhHHhhHHHHHHh
Q 045010 101 GKHPP-GADHLDYARTKIADKARDMTERAKEYG 132 (146)
Q Consensus 101 g~~p~-g~~~~d~Ar~ri~d~a~~v~~kake~G 132 (146)
|+.|. -+||+++||.++.+. .-+.|=|+++|
T Consensus 1 GR~~~lt~~q~~~a~~l~~~G-~s~~~iA~~~g 32 (47)
T d1ijwc_ 1 GRPRAINKHEQEQISRLLEKG-HPRQQLAIIFG 32 (47)
T ss_dssp CCCCSSCHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHCC-CCHHHHHHHHC
Confidence 44443 367899999999764 57888899988
No 3
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.21 E-value=23 Score=25.67 Aligned_cols=36 Identities=6% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCchHHHHHHHh--hhhHHhhHHHHHHhHHHHHHhHh
Q 045010 106 GADHLDYARTKIA--DKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 106 g~~~~d~Ar~ri~--d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
.+|++..|=+|+. ++.+.+++||++.++.++.-+.|
T Consensus 410 t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~~a~~~ 447 (471)
T d2vcha1 410 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKD 447 (471)
T ss_dssp CHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTST
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455666667764 34457888888888776643334
No 4
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=22.74 E-value=20 Score=25.12 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHhhhhHHhhHHHHHHhHHHHH
Q 045010 106 GADHLDYARTKIADKARDMTERAKEYGQYVQQ 137 (146)
Q Consensus 106 g~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ 137 (146)
..+..+||+.|...+.++.++|.+|..+..=+
T Consensus 107 t~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~ 138 (148)
T d1di0a_ 107 TPHHFHESKEHHDFFHAHFKVKGVEAAHAALQ 138 (148)
T ss_dssp CBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhccccccccccHHHHHHHHHH
Confidence 47889999999998888889999998865433
No 5
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=22.41 E-value=19 Score=26.00 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=20.1
Q ss_pred CCchHHHHHHHhhhhHHhhHHHHHHhHHHHHHhHh
Q 045010 107 ADHLDYARTKIADKARDMTERAKEYGQYVQQKAQE 141 (146)
Q Consensus 107 ~~~~d~Ar~ri~d~a~~v~~kake~Gq~iq~ka~~ 141 (146)
++++..|=+++.+.-+.++++++|.++.+.+-++|
T Consensus 410 ~~~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~ 444 (461)
T d2acva1 410 AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 444 (461)
T ss_dssp HHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhcC
Confidence 34566666666544344677777777665543333
No 6
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Probab=20.15 E-value=84 Score=20.29 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCCCC--chHHHHHHHhhhhH
Q 045010 81 SGGCGVTAITVLSWIYSYVKGKHPPGAD--HLDYARTKIADKAR 122 (146)
Q Consensus 81 sg~~g~tals~lsW~~~y~~g~~p~g~~--~~d~Ar~ri~d~a~ 122 (146)
++++|++ =..+-+..+|.+.+..-|.. ..+..+.|++|...
T Consensus 19 ~~a~G~a-~~al~~a~~ya~~R~~fG~pl~~~q~vq~~la~~~~ 61 (153)
T d1r2ja1 19 WGCVGIL-RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWT 61 (153)
T ss_dssp HHHHHHH-HHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhhcccCCccccccchhhhhhhhhcc
Confidence 3444444 45588899999887654421 23556677776544
No 7
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.38 E-value=25 Score=25.42 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHhhhhHHhhHHHHHHhH
Q 045010 90 TVLSWIYSYVKGKHPPGADHLDYARTKIADKARDMTERAKEYGQ 133 (146)
Q Consensus 90 s~lsW~~~y~~g~~p~g~~~~d~Ar~ri~d~a~~v~~kake~Gq 133 (146)
+...=||.|.||..|...|=+. +-..+++.+..+.+.+|++..
T Consensus 48 ~~m~~m~~f~rg~g~~k~dLI~-aAK~iA~a~~~L~~~Ar~iA~ 90 (181)
T d1qkra_ 48 LLMAEMSRLVRGGSGNKRALIQ-CAKDIAKASDEVTRLAKEVAK 90 (181)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 4456688899988775544333 444677777777777777664
No 8
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=18.27 E-value=36 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.0
Q ss_pred CCCchHHHHHHHhhhhHHhhHHHHHHh
Q 045010 106 GADHLDYARTKIADKARDMTERAKEYG 132 (146)
Q Consensus 106 g~~~~d~Ar~ri~d~a~~v~~kake~G 132 (146)
..+++..+|.|+.+....+-++||+-|
T Consensus 34 ~~~~~~~~r~~l~~~~~~ll~rA~~aG 60 (110)
T d2o7ta2 34 LPDEVSALRRTTEKNTTTLINLAKQHG 60 (110)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356788889999888888888888877
No 9
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=13.71 E-value=1.7e+02 Score=19.24 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 045010 41 LTLTGTVIALIMATPV 56 (146)
Q Consensus 41 lTL~gt~i~L~vaTPL 56 (146)
+++.++++++++++|+
T Consensus 14 is~~~~~i~~ilg~~l 29 (203)
T d3dhwa1 14 MTFVSGFFGFVIGLPV 29 (203)
T ss_dssp HHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666666654
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.37 E-value=1.8e+02 Score=19.29 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=7.0
Q ss_pred hHHHHHHHhhh
Q 045010 110 LDYARTKIADK 120 (146)
Q Consensus 110 ~d~Ar~ri~d~ 120 (146)
.+..|+|+.|-
T Consensus 406 ~~~~r~~~~e~ 416 (417)
T d1pv7a_ 406 LSLLRRQVNEV 416 (417)
T ss_dssp TTHHHHHHHHH
T ss_pred cchhHhhhccC
Confidence 56667777653
Done!