Query 045012
Match_columns 576
No_of_seqs 465 out of 2893
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7E-71 1.5E-75 609.2 41.6 534 7-576 4-576 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-45 6.3E-50 366.6 15.3 279 163-448 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 1E-38 2.2E-43 371.7 32.5 356 160-550 186-567 (1153)
4 PRK04841 transcriptional regul 99.7 7.7E-15 1.7E-19 170.1 25.5 287 168-495 20-332 (903)
5 PRK00411 cdc6 cell division co 99.5 4.9E-11 1.1E-15 124.8 27.9 298 160-474 32-358 (394)
6 COG2909 MalT ATP-dependent tra 99.4 1.1E-11 2.4E-16 132.2 20.7 292 167-497 24-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.4 3.5E-10 7.6E-15 117.1 27.9 299 160-474 17-350 (365)
8 TIGR03015 pepcterm_ATPase puta 99.3 1.3E-10 2.9E-15 114.8 20.2 182 185-372 43-242 (269)
9 PF01637 Arch_ATPase: Archaeal 99.2 8E-11 1.7E-15 113.6 12.4 193 161-367 2-233 (234)
10 COG3899 Predicted ATPase [Gene 99.2 2.4E-10 5.2E-15 128.6 17.5 312 161-495 3-386 (849)
11 PRK00080 ruvB Holliday junctio 99.2 2.6E-10 5.6E-15 115.8 15.9 275 161-475 28-311 (328)
12 TIGR00635 ruvB Holliday juncti 99.2 9.8E-10 2.1E-14 110.7 19.1 275 161-475 7-290 (305)
13 PF05729 NACHT: NACHT domain 99.1 3.5E-10 7.5E-15 102.9 10.1 144 186-335 1-163 (166)
14 PTZ00112 origin recognition co 99.0 9.6E-08 2.1E-12 103.5 24.0 301 160-475 757-1087(1164)
15 COG2256 MGS1 ATPase related to 98.8 2.4E-08 5.2E-13 98.8 11.9 168 161-365 33-209 (436)
16 PRK06893 DNA replication initi 98.8 2.9E-08 6.3E-13 95.2 11.1 155 186-372 40-207 (229)
17 PRK13342 recombination factor 98.8 2E-07 4.4E-12 97.7 16.3 176 161-371 15-199 (413)
18 PF13401 AAA_22: AAA domain; P 98.8 1.7E-08 3.8E-13 87.9 7.0 118 184-304 3-125 (131)
19 PRK07003 DNA polymerase III su 98.7 6.2E-07 1.3E-11 96.9 19.6 195 161-372 19-225 (830)
20 PRK05564 DNA polymerase III su 98.7 5.2E-07 1.1E-11 91.1 16.8 177 161-368 7-190 (313)
21 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.8E-07 3.9E-12 89.8 12.9 171 164-372 23-205 (226)
22 PRK04195 replication factor C 98.7 1.1E-06 2.3E-11 94.1 19.5 244 161-447 17-271 (482)
23 PRK14961 DNA polymerase III su 98.7 8.1E-07 1.8E-11 91.4 17.3 192 161-368 19-220 (363)
24 PRK12402 replication factor C 98.7 5.2E-07 1.1E-11 92.3 15.5 198 161-369 18-227 (337)
25 COG3903 Predicted ATPase [Gene 98.7 6.5E-08 1.4E-12 96.4 8.0 291 184-495 13-314 (414)
26 PRK14963 DNA polymerase III su 98.6 1.4E-07 3E-12 100.3 10.9 196 161-366 17-215 (504)
27 PRK12323 DNA polymerase III su 98.6 1.2E-06 2.7E-11 93.4 16.2 196 161-368 19-225 (700)
28 PF13191 AAA_16: AAA ATPase do 98.6 1.4E-07 3.1E-12 87.4 8.1 48 161-211 3-50 (185)
29 cd00009 AAA The AAA+ (ATPases 98.6 3.8E-07 8.3E-12 80.6 10.4 124 161-305 1-130 (151)
30 PRK14949 DNA polymerase III su 98.6 1.4E-06 3E-11 96.1 16.0 192 161-368 19-220 (944)
31 KOG2028 ATPase related to the 98.6 1.2E-06 2.7E-11 85.2 13.5 159 182-363 159-331 (554)
32 PF13173 AAA_14: AAA domain 98.5 1.4E-07 3E-12 81.8 6.4 120 185-327 2-127 (128)
33 PRK14960 DNA polymerase III su 98.5 2E-06 4.3E-11 92.0 16.3 191 161-367 18-218 (702)
34 COG1474 CDC6 Cdc6-related prot 98.5 7.8E-05 1.7E-09 76.1 27.3 204 160-368 19-238 (366)
35 PLN03025 replication factor C 98.5 2.1E-06 4.5E-11 86.9 15.5 181 161-367 16-199 (319)
36 PRK06645 DNA polymerase III su 98.5 3.8E-06 8.3E-11 89.0 17.5 192 161-365 24-226 (507)
37 TIGR02903 spore_lon_C ATP-depe 98.5 3.2E-05 6.9E-10 84.8 24.9 202 160-371 156-398 (615)
38 PRK00440 rfc replication facto 98.5 4.2E-06 9.1E-11 84.9 16.9 181 161-369 20-204 (319)
39 PF05496 RuvB_N: Holliday junc 98.5 2.8E-06 6E-11 78.9 13.7 180 161-374 27-227 (233)
40 PRK07471 DNA polymerase III su 98.5 4.1E-06 9E-11 85.5 16.5 195 161-369 22-239 (365)
41 TIGR00678 holB DNA polymerase 98.5 4.1E-06 8.9E-11 77.9 15.2 91 264-364 95-187 (188)
42 PRK14957 DNA polymerase III su 98.5 3.9E-06 8.4E-11 89.6 16.6 182 161-370 19-223 (546)
43 cd01128 rho_factor Transcripti 98.5 2.5E-07 5.5E-12 89.1 6.4 93 183-276 14-114 (249)
44 TIGR02397 dnaX_nterm DNA polym 98.5 7.7E-06 1.7E-10 84.3 17.8 180 161-369 17-219 (355)
45 PRK14956 DNA polymerase III su 98.5 6.7E-07 1.5E-11 92.9 9.8 190 161-366 21-220 (484)
46 PRK07940 DNA polymerase III su 98.5 6.3E-06 1.4E-10 85.0 16.6 191 161-368 8-213 (394)
47 PRK09112 DNA polymerase III su 98.5 6.7E-06 1.4E-10 83.6 16.6 194 161-369 26-241 (351)
48 PRK07994 DNA polymerase III su 98.4 3.8E-06 8.2E-11 91.0 14.8 192 161-368 19-220 (647)
49 PRK08727 hypothetical protein; 98.4 4.8E-06 1E-10 80.1 14.1 151 186-368 42-204 (233)
50 PRK14951 DNA polymerase III su 98.4 7.6E-06 1.6E-10 88.5 16.7 195 161-368 19-225 (618)
51 PRK14964 DNA polymerase III su 98.4 9.3E-06 2E-10 85.5 16.9 190 161-366 16-215 (491)
52 PRK08691 DNA polymerase III su 98.4 6.3E-06 1.4E-10 89.1 15.9 192 161-369 19-221 (709)
53 PF00308 Bac_DnaA: Bacterial d 98.4 8.3E-06 1.8E-10 77.5 15.1 191 152-371 4-211 (219)
54 PRK14958 DNA polymerase III su 98.4 7.3E-06 1.6E-10 87.5 15.9 192 161-368 19-220 (509)
55 PRK08084 DNA replication initi 98.4 4.9E-06 1.1E-10 80.2 13.1 156 185-372 45-213 (235)
56 PRK08903 DnaA regulatory inact 98.4 4.2E-06 9.1E-11 80.4 12.6 153 184-372 41-203 (227)
57 PRK05896 DNA polymerase III su 98.4 6E-06 1.3E-10 88.3 14.4 194 161-370 19-223 (605)
58 PRK14955 DNA polymerase III su 98.3 1.2E-05 2.5E-10 83.9 15.9 198 161-367 19-227 (397)
59 PRK09087 hypothetical protein; 98.3 3.8E-06 8.3E-11 80.1 11.3 145 185-372 44-199 (226)
60 PRK14962 DNA polymerase III su 98.3 1.3E-05 2.8E-10 84.7 16.2 193 161-372 17-223 (472)
61 PF05621 TniB: Bacterial TniB 98.3 2.2E-05 4.8E-10 76.3 16.1 198 166-368 45-261 (302)
62 PTZ00202 tuzin; Provisional 98.3 1.6E-05 3.5E-10 80.6 15.4 163 160-334 264-433 (550)
63 PRK14969 DNA polymerase III su 98.3 2E-05 4.4E-10 84.6 17.4 191 161-368 19-221 (527)
64 PRK13341 recombination factor 98.3 7.7E-06 1.7E-10 90.5 14.4 168 161-365 31-214 (725)
65 PRK09111 DNA polymerase III su 98.3 1.9E-05 4E-10 85.7 16.6 196 161-369 27-234 (598)
66 PRK09376 rho transcription ter 98.3 2.1E-06 4.5E-11 86.4 7.9 93 183-276 167-267 (416)
67 PRK07764 DNA polymerase III su 98.3 2.3E-05 4.9E-10 87.9 16.7 187 161-366 18-219 (824)
68 PRK14970 DNA polymerase III su 98.3 3E-05 6.5E-10 80.2 16.6 177 161-367 20-208 (367)
69 PRK14950 DNA polymerase III su 98.2 1.9E-05 4.1E-10 86.4 15.2 195 161-370 19-223 (585)
70 PF14516 AAA_35: AAA-like doma 98.2 0.00024 5.2E-09 72.1 21.7 198 161-375 14-246 (331)
71 PRK05642 DNA replication initi 98.2 2E-05 4.3E-10 75.9 13.2 156 185-372 45-212 (234)
72 PRK14952 DNA polymerase III su 98.2 5.5E-05 1.2E-09 81.7 17.6 195 161-371 16-223 (584)
73 PRK14959 DNA polymerase III su 98.2 5.5E-05 1.2E-09 81.5 16.4 196 161-372 19-225 (624)
74 PRK07133 DNA polymerase III su 98.2 6.9E-05 1.5E-09 82.0 17.1 192 161-369 21-221 (725)
75 PRK14953 DNA polymerase III su 98.2 0.0001 2.2E-09 78.3 18.1 190 161-369 19-221 (486)
76 PRK14087 dnaA chromosomal repl 98.1 3.4E-05 7.3E-10 81.4 14.2 171 185-372 141-323 (450)
77 TIGR01242 26Sp45 26S proteasom 98.1 9.6E-06 2.1E-10 83.7 10.0 176 161-362 125-328 (364)
78 PRK05707 DNA polymerase III su 98.1 6.2E-05 1.3E-09 75.9 15.5 171 183-368 20-203 (328)
79 PRK14954 DNA polymerase III su 98.1 0.00014 3E-09 79.2 18.1 199 161-368 19-229 (620)
80 CHL00181 cbbX CbbX; Provisiona 98.1 0.00024 5.1E-09 70.5 18.2 136 185-337 59-211 (287)
81 PRK06620 hypothetical protein; 98.1 2.3E-05 5E-10 74.2 10.3 140 186-370 45-191 (214)
82 PRK08451 DNA polymerase III su 98.1 0.00014 3.1E-09 77.4 17.3 193 161-369 17-219 (535)
83 TIGR00767 rho transcription te 98.1 6.8E-06 1.5E-10 83.2 7.0 93 183-276 166-266 (415)
84 TIGR02880 cbbX_cfxQ probable R 98.1 0.0002 4.3E-09 71.0 17.2 135 186-337 59-210 (284)
85 TIGR03345 VI_ClpV1 type VI sec 98.1 7.1E-05 1.5E-09 85.0 15.8 155 159-335 188-363 (852)
86 PRK14971 DNA polymerase III su 98.1 0.00013 2.9E-09 79.7 17.4 189 161-367 20-221 (614)
87 PRK06305 DNA polymerase III su 98.1 0.00011 2.4E-09 77.6 16.1 192 161-368 20-223 (451)
88 KOG0989 Replication factor C, 98.1 3.4E-05 7.3E-10 74.1 10.8 181 161-363 39-225 (346)
89 PHA02544 44 clamp loader, smal 98.0 4.9E-05 1.1E-09 77.0 12.3 144 161-332 24-170 (316)
90 TIGR02881 spore_V_K stage V sp 98.0 9.7E-05 2.1E-09 72.5 13.9 138 183-337 40-193 (261)
91 COG2255 RuvB Holliday junction 98.0 0.0002 4.3E-09 68.2 14.9 178 161-372 29-227 (332)
92 KOG2227 Pre-initiation complex 98.0 0.00027 5.8E-09 71.9 16.7 198 160-363 152-363 (529)
93 TIGR02639 ClpA ATP-dependent C 98.0 4.5E-05 9.8E-10 85.8 12.7 155 159-335 183-358 (731)
94 PRK06647 DNA polymerase III su 98.0 0.00028 6.1E-09 76.3 18.1 192 161-368 19-220 (563)
95 PRK14948 DNA polymerase III su 98.0 0.00024 5.2E-09 77.7 17.5 196 161-370 19-224 (620)
96 PRK14088 dnaA chromosomal repl 98.0 7.6E-05 1.6E-09 78.6 12.8 160 185-368 130-305 (440)
97 TIGR00362 DnaA chromosomal rep 97.9 0.0001 2.2E-09 77.3 13.3 161 185-368 136-310 (405)
98 PRK14965 DNA polymerase III su 97.9 0.00026 5.6E-09 77.2 16.6 194 161-370 19-223 (576)
99 PRK05563 DNA polymerase III su 97.9 0.00039 8.5E-09 75.4 17.8 190 161-366 19-218 (559)
100 CHL00095 clpC Clp protease ATP 97.9 6.5E-05 1.4E-09 85.6 12.2 155 159-334 180-353 (821)
101 PF05673 DUF815: Protein of un 97.9 0.00082 1.8E-08 63.5 16.8 119 161-307 30-153 (249)
102 PRK03992 proteasome-activating 97.9 6.8E-05 1.5E-09 77.8 10.6 175 161-361 134-336 (389)
103 PRK11331 5-methylcytosine-spec 97.9 6.5E-05 1.4E-09 77.5 9.7 117 161-289 178-297 (459)
104 PRK00149 dnaA chromosomal repl 97.9 0.00015 3.2E-09 77.1 12.8 162 184-368 147-322 (450)
105 PRK12422 chromosomal replicati 97.9 0.00019 4.1E-09 75.5 13.3 155 185-362 141-307 (445)
106 PRK07399 DNA polymerase III su 97.9 0.00071 1.5E-08 67.9 16.7 196 161-369 7-222 (314)
107 PF00004 AAA: ATPase family as 97.8 2.9E-05 6.3E-10 67.3 5.9 21 188-208 1-21 (132)
108 PRK08769 DNA polymerase III su 97.8 0.00077 1.7E-08 67.4 16.3 96 264-369 112-209 (319)
109 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00031 6.7E-09 80.4 14.4 155 160-335 175-349 (852)
110 PRK11034 clpA ATP-dependent Cl 97.8 8.1E-05 1.8E-09 82.9 9.4 155 160-335 188-362 (758)
111 PRK06871 DNA polymerase III su 97.8 0.0012 2.6E-08 66.2 16.9 166 184-365 23-200 (325)
112 PRK14086 dnaA chromosomal repl 97.8 0.00027 5.9E-09 75.9 12.9 160 186-368 315-488 (617)
113 KOG2543 Origin recognition com 97.8 0.00013 2.7E-09 72.3 9.4 197 161-371 9-229 (438)
114 COG0593 DnaA ATPase involved i 97.7 0.00049 1.1E-08 70.3 13.7 137 184-340 112-262 (408)
115 PRK06090 DNA polymerase III su 97.7 0.0014 3E-08 65.6 16.5 93 264-368 107-201 (319)
116 smart00382 AAA ATPases associa 97.7 0.00021 4.6E-09 62.3 9.3 88 186-278 3-91 (148)
117 PTZ00361 26 proteosome regulat 97.7 0.00019 4E-09 74.9 9.8 156 161-337 186-369 (438)
118 PRK07993 DNA polymerase III su 97.7 0.0018 3.9E-08 65.6 16.5 178 167-366 11-202 (334)
119 PF13177 DNA_pol3_delta2: DNA 97.6 0.00065 1.4E-08 61.3 11.6 137 162-323 1-162 (162)
120 PRK08058 DNA polymerase III su 97.6 0.0016 3.4E-08 66.1 15.5 160 163-334 11-181 (329)
121 TIGR00763 lon ATP-dependent pr 97.6 0.012 2.5E-07 67.0 24.0 162 161-335 323-505 (775)
122 PRK08116 hypothetical protein; 97.6 0.00016 3.5E-09 70.9 7.9 104 186-305 115-221 (268)
123 PRK10865 protein disaggregatio 97.6 0.00058 1.3E-08 77.9 13.3 43 160-208 180-222 (857)
124 COG3267 ExeA Type II secretory 97.6 0.0025 5.5E-08 60.1 14.9 183 183-370 49-247 (269)
125 COG0466 Lon ATP-dependent Lon 97.6 0.0029 6.3E-08 67.9 16.9 162 161-336 326-509 (782)
126 PRK10787 DNA-binding ATP-depen 97.6 0.0043 9.4E-08 69.9 19.2 162 161-335 325-506 (784)
127 PRK06964 DNA polymerase III su 97.5 0.0026 5.7E-08 64.3 15.2 93 264-368 131-225 (342)
128 TIGR00602 rad24 checkpoint pro 97.5 0.00063 1.4E-08 74.1 11.5 205 161-371 87-326 (637)
129 PRK13531 regulatory ATPase Rav 97.5 0.001 2.2E-08 69.5 12.2 39 161-207 23-61 (498)
130 COG1373 Predicted ATPase (AAA+ 97.5 0.0011 2.4E-08 68.9 12.5 225 187-473 39-269 (398)
131 PTZ00454 26S protease regulato 97.5 0.00099 2.1E-08 69.0 11.5 175 161-361 148-350 (398)
132 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0029 6.2E-08 62.1 14.0 43 186-233 22-64 (262)
133 CHL00176 ftsH cell division pr 97.4 0.0024 5.1E-08 70.1 14.6 151 184-360 215-386 (638)
134 PRK10536 hypothetical protein; 97.4 0.00089 1.9E-08 64.1 9.8 132 161-305 58-213 (262)
135 TIGR03689 pup_AAA proteasome A 97.4 0.0012 2.7E-08 69.9 11.7 162 161-335 185-378 (512)
136 KOG0741 AAA+-type ATPase [Post 97.4 0.0033 7.1E-08 64.9 13.9 161 182-371 535-715 (744)
137 PRK08181 transposase; Validate 97.3 0.00048 1E-08 67.3 7.0 101 186-305 107-209 (269)
138 TIGR01241 FtsH_fam ATP-depende 97.3 0.0036 7.8E-08 67.4 14.3 159 184-368 87-267 (495)
139 PF10443 RNA12: RNA12 protein; 97.3 0.0092 2E-07 61.0 16.2 201 163-379 1-289 (431)
140 KOG0733 Nuclear AAA ATPase (VC 97.3 0.005 1.1E-07 64.7 14.2 156 161-337 193-376 (802)
141 TIGR02639 ClpA ATP-dependent C 97.3 0.0025 5.4E-08 71.9 13.2 119 161-291 457-579 (731)
142 PRK12377 putative replication 97.3 0.00072 1.6E-08 65.2 7.5 101 186-304 102-205 (248)
143 PRK08118 topology modulation p 97.3 0.00013 2.8E-09 66.2 2.2 34 187-220 3-37 (167)
144 PF01695 IstB_IS21: IstB-like 97.3 0.00033 7.2E-09 64.2 4.9 102 185-305 47-150 (178)
145 COG2607 Predicted ATPase (AAA+ 97.3 0.024 5.2E-07 53.1 16.5 103 161-291 63-166 (287)
146 PRK09361 radB DNA repair and r 97.2 0.00088 1.9E-08 64.2 7.7 46 183-231 21-66 (225)
147 COG1222 RPT1 ATP-dependent 26S 97.2 0.0048 1E-07 61.0 12.5 185 161-372 154-371 (406)
148 PRK06526 transposase; Provisio 97.2 0.00042 9.2E-09 67.3 5.3 101 185-305 98-201 (254)
149 PRK08939 primosomal protein Dn 97.2 0.0013 2.8E-08 65.8 8.6 122 162-304 135-260 (306)
150 PF04665 Pox_A32: Poxvirus A32 97.2 0.00065 1.4E-08 64.7 6.1 36 186-223 14-49 (241)
151 PRK04296 thymidine kinase; Pro 97.2 0.00065 1.4E-08 63.1 6.1 113 186-305 3-116 (190)
152 COG2812 DnaX DNA polymerase II 97.2 0.0023 5E-08 67.5 10.6 187 161-363 19-215 (515)
153 PRK08699 DNA polymerase III su 97.2 0.0066 1.4E-07 61.2 13.5 71 264-334 112-184 (325)
154 PRK12608 transcription termina 97.2 0.0021 4.5E-08 65.0 9.8 103 166-275 119-230 (380)
155 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00098 2.1E-08 75.9 8.3 135 161-304 569-718 (852)
156 PRK09183 transposase/IS protei 97.2 0.00081 1.8E-08 65.6 6.6 23 186-208 103-125 (259)
157 PRK10865 protein disaggregatio 97.2 0.0037 8.1E-08 71.4 12.8 134 161-304 571-720 (857)
158 TIGR02237 recomb_radB DNA repa 97.2 0.0012 2.7E-08 62.3 7.5 49 183-234 10-58 (209)
159 COG0470 HolB ATPase involved i 97.2 0.0025 5.5E-08 64.6 10.4 144 161-325 4-171 (325)
160 PF02562 PhoH: PhoH-like prote 97.1 0.0018 3.8E-08 60.3 8.2 128 162-305 4-156 (205)
161 COG0542 clpA ATP-binding subun 97.1 0.01 2.2E-07 65.4 15.2 130 161-304 494-643 (786)
162 TIGR03346 chaperone_ClpB ATP-d 97.1 0.0023 5E-08 73.3 10.6 135 161-304 568-717 (852)
163 PRK04132 replication factor C 97.1 0.0079 1.7E-07 67.6 13.8 157 193-370 574-733 (846)
164 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0018 3.9E-08 62.4 7.8 92 183-275 17-125 (235)
165 PRK07952 DNA replication prote 97.0 0.0023 5E-08 61.6 8.2 103 185-304 99-204 (244)
166 KOG1514 Origin recognition com 97.0 0.016 3.5E-07 62.1 15.1 201 161-368 399-621 (767)
167 PRK06921 hypothetical protein; 97.0 0.0018 3.8E-08 63.5 7.4 38 184-223 116-154 (266)
168 PF07693 KAP_NTPase: KAP famil 97.0 0.027 5.8E-07 57.2 16.4 43 164-209 2-44 (325)
169 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00086 1.9E-08 67.5 4.6 50 160-209 53-102 (361)
170 CHL00095 clpC Clp protease ATP 97.0 0.0062 1.3E-07 69.7 12.1 134 161-304 512-661 (821)
171 COG0542 clpA ATP-binding subun 96.9 0.0029 6.3E-08 69.6 8.8 153 159-334 171-345 (786)
172 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0056 1.2E-07 65.0 10.7 134 183-337 257-407 (489)
173 PF00158 Sigma54_activat: Sigm 96.9 0.0035 7.7E-08 56.8 8.0 130 161-305 2-144 (168)
174 cd01393 recA_like RecA is a b 96.9 0.0055 1.2E-07 58.7 9.9 90 183-275 17-124 (226)
175 KOG2004 Mitochondrial ATP-depe 96.9 0.013 2.9E-07 62.8 13.2 102 161-276 414-516 (906)
176 PF07728 AAA_5: AAA domain (dy 96.9 0.00041 8.9E-09 60.9 1.8 86 188-287 2-87 (139)
177 PF00448 SRP54: SRP54-type pro 96.9 0.0032 6.9E-08 58.7 7.8 89 185-275 1-93 (196)
178 TIGR01243 CDC48 AAA family ATP 96.9 0.006 1.3E-07 69.0 11.1 176 161-362 181-381 (733)
179 PRK05541 adenylylsulfate kinas 96.9 0.0025 5.4E-08 58.5 6.6 37 183-221 5-41 (176)
180 cd00983 recA RecA is a bacter 96.9 0.0022 4.7E-08 64.1 6.6 86 183-275 53-143 (325)
181 TIGR02902 spore_lonB ATP-depen 96.9 0.0065 1.4E-07 65.7 10.7 42 160-207 67-108 (531)
182 PF13207 AAA_17: AAA domain; P 96.8 0.00088 1.9E-08 57.1 3.0 22 187-208 1-22 (121)
183 KOG0731 AAA+-type ATPase conta 96.8 0.014 2.9E-07 64.1 12.5 176 165-365 321-521 (774)
184 cd01394 radB RadB. The archaea 96.8 0.0038 8.3E-08 59.4 7.4 44 183-228 17-60 (218)
185 PRK09354 recA recombinase A; P 96.8 0.0032 6.9E-08 63.5 7.0 86 183-275 58-148 (349)
186 TIGR02012 tigrfam_recA protein 96.8 0.0032 7E-08 62.8 6.9 86 183-275 53-143 (321)
187 PRK06835 DNA replication prote 96.7 0.0026 5.6E-08 64.1 6.2 103 186-305 184-289 (329)
188 TIGR01243 CDC48 AAA family ATP 96.7 0.0084 1.8E-07 67.8 11.0 176 161-362 456-657 (733)
189 TIGR03499 FlhF flagellar biosy 96.7 0.006 1.3E-07 60.4 8.6 87 184-274 193-281 (282)
190 PRK11889 flhF flagellar biosyn 96.7 0.014 3E-07 59.5 11.0 90 183-276 239-331 (436)
191 PRK07261 topology modulation p 96.7 0.003 6.5E-08 57.6 5.6 65 187-275 2-67 (171)
192 PF08423 Rad51: Rad51; InterP 96.7 0.0044 9.5E-08 60.4 7.1 57 183-240 36-96 (256)
193 PRK06696 uridine kinase; Valid 96.7 0.0021 4.6E-08 61.4 4.7 44 162-208 2-45 (223)
194 PRK12724 flagellar biosynthesi 96.7 0.0065 1.4E-07 62.5 8.3 25 184-208 222-246 (432)
195 PF14532 Sigma54_activ_2: Sigm 96.6 0.0018 3.9E-08 56.8 3.7 108 161-305 1-110 (138)
196 cd01120 RecA-like_NTPases RecA 96.6 0.0096 2.1E-07 53.3 8.3 39 187-227 1-39 (165)
197 PRK13695 putative NTPase; Prov 96.6 0.0033 7.1E-08 57.6 5.2 22 187-208 2-23 (174)
198 COG1484 DnaC DNA replication p 96.6 0.0072 1.6E-07 58.8 7.8 82 184-283 104-185 (254)
199 KOG2228 Origin recognition com 96.6 0.02 4.4E-07 56.2 10.5 176 156-335 22-219 (408)
200 KOG0730 AAA+-type ATPase [Post 96.5 0.015 3.2E-07 62.0 10.2 136 182-338 465-618 (693)
201 KOG0991 Replication factor C, 96.5 0.1 2.2E-06 48.7 14.3 41 161-207 30-70 (333)
202 PRK06067 flagellar accessory p 96.5 0.0091 2E-07 57.5 8.2 88 183-275 23-130 (234)
203 PRK05022 anaerobic nitric oxid 96.5 0.021 4.6E-07 61.7 11.8 46 159-208 188-233 (509)
204 KOG2035 Replication factor C, 96.5 0.021 4.6E-07 54.5 10.1 203 162-387 17-257 (351)
205 PRK11034 clpA ATP-dependent Cl 96.5 0.015 3.3E-07 65.1 10.8 118 161-290 461-582 (758)
206 KOG0733 Nuclear AAA ATPase (VC 96.5 0.038 8.3E-07 58.4 12.5 156 183-361 543-717 (802)
207 cd03247 ABCC_cytochrome_bd The 96.5 0.0098 2.1E-07 54.6 7.7 119 185-309 28-161 (178)
208 cd01131 PilT Pilus retraction 96.5 0.0029 6.4E-08 59.2 4.2 111 186-309 2-113 (198)
209 PLN00020 ribulose bisphosphate 96.5 0.0055 1.2E-07 61.5 6.2 27 182-208 145-171 (413)
210 KOG1969 DNA replication checkp 96.5 0.0073 1.6E-07 64.9 7.4 76 182-278 323-400 (877)
211 KOG0744 AAA+-type ATPase [Post 96.5 0.01 2.2E-07 57.8 7.6 80 185-275 177-260 (423)
212 PRK14974 cell division protein 96.4 0.04 8.7E-07 55.7 12.3 92 183-277 138-234 (336)
213 PRK14722 flhF flagellar biosyn 96.4 0.011 2.3E-07 60.4 8.1 90 184-276 136-226 (374)
214 KOG0734 AAA+-type ATPase conta 96.4 0.015 3.3E-07 60.3 9.0 91 165-276 314-407 (752)
215 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0095 2.1E-07 53.1 6.7 117 186-305 3-138 (159)
216 PRK12723 flagellar biosynthesi 96.4 0.021 4.6E-07 58.8 10.0 89 184-276 173-265 (388)
217 cd03214 ABC_Iron-Siderophores_ 96.4 0.028 6E-07 51.7 9.9 122 184-308 24-161 (180)
218 PRK05703 flhF flagellar biosyn 96.3 0.025 5.5E-07 59.2 10.6 88 185-276 221-310 (424)
219 PRK15429 formate hydrogenlyase 96.3 0.027 5.8E-07 63.4 11.6 133 160-305 378-521 (686)
220 cd03228 ABCC_MRP_Like The MRP 96.3 0.02 4.3E-07 52.2 8.8 123 184-310 27-160 (171)
221 PRK00771 signal recognition pa 96.3 0.026 5.7E-07 59.1 10.5 58 183-243 93-152 (437)
222 TIGR01817 nifA Nif-specific re 96.3 0.087 1.9E-06 57.4 15.1 45 160-208 198-242 (534)
223 PRK04301 radA DNA repair and r 96.3 0.012 2.6E-07 59.5 7.7 58 183-241 100-161 (317)
224 TIGR02236 recomb_radA DNA repa 96.3 0.012 2.7E-07 59.2 7.8 58 183-241 93-154 (310)
225 COG0468 RecA RecA/RadA recombi 96.3 0.017 3.6E-07 56.5 8.3 92 182-275 57-151 (279)
226 COG1875 NYN ribonuclease and A 96.3 0.019 4.2E-07 56.9 8.7 135 161-304 227-387 (436)
227 PRK08233 hypothetical protein; 96.3 0.013 2.7E-07 53.9 7.3 24 185-208 3-26 (182)
228 COG1618 Predicted nucleotide k 96.3 0.004 8.6E-08 54.5 3.5 24 185-208 5-28 (179)
229 cd03238 ABC_UvrA The excision 96.3 0.022 4.8E-07 52.0 8.6 116 184-309 20-153 (176)
230 PLN03186 DNA repair protein RA 96.2 0.026 5.5E-07 57.2 9.7 59 183-242 121-183 (342)
231 COG0572 Udk Uridine kinase [Nu 96.2 0.01 2.2E-07 55.3 6.2 79 183-266 6-85 (218)
232 PRK07132 DNA polymerase III su 96.2 0.25 5.4E-06 49.2 16.5 153 184-367 17-184 (299)
233 PRK15455 PrkA family serine pr 96.2 0.0037 8E-08 66.3 3.6 47 161-207 79-125 (644)
234 PF07724 AAA_2: AAA domain (Cd 96.2 0.0055 1.2E-07 55.7 4.3 40 184-224 2-41 (171)
235 cd01133 F1-ATPase_beta F1 ATP 96.2 0.021 4.5E-07 55.6 8.5 89 184-274 68-172 (274)
236 PLN03187 meiotic recombination 96.2 0.023 5E-07 57.5 9.1 59 183-242 124-186 (344)
237 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.035 7.5E-07 49.0 9.2 106 184-309 25-131 (144)
238 PF13604 AAA_30: AAA domain; P 96.2 0.011 2.3E-07 55.2 6.2 105 186-303 19-129 (196)
239 PHA02244 ATPase-like protein 96.2 0.032 6.8E-07 56.5 9.7 22 187-208 121-142 (383)
240 COG1136 SalX ABC-type antimicr 96.2 0.036 7.9E-07 52.2 9.6 61 252-312 147-210 (226)
241 PRK12726 flagellar biosynthesi 96.2 0.05 1.1E-06 55.3 11.1 90 183-276 204-296 (407)
242 PRK09270 nucleoside triphospha 96.1 0.024 5.1E-07 54.4 8.6 26 182-207 30-55 (229)
243 cd03216 ABC_Carb_Monos_I This 96.1 0.022 4.8E-07 51.4 7.9 118 184-309 25-146 (163)
244 cd03223 ABCD_peroxisomal_ALDP 96.1 0.052 1.1E-06 49.2 10.3 117 184-309 26-152 (166)
245 COG4608 AppF ABC-type oligopep 96.1 0.02 4.2E-07 55.0 7.7 125 184-312 38-177 (268)
246 cd01125 repA Hexameric Replica 96.1 0.035 7.6E-07 53.6 9.6 22 187-208 3-24 (239)
247 KOG0735 AAA+-type ATPase [Post 96.1 0.012 2.6E-07 63.1 6.6 159 184-369 430-617 (952)
248 PF03215 Rad17: Rad17 cell cyc 96.1 0.043 9.4E-07 58.8 11.0 35 184-222 44-78 (519)
249 PF00485 PRK: Phosphoribulokin 96.1 0.025 5.5E-07 52.7 8.3 81 187-269 1-87 (194)
250 TIGR02238 recomb_DMC1 meiotic 96.1 0.027 5.9E-07 56.4 8.9 59 183-242 94-156 (313)
251 TIGR02239 recomb_RAD51 DNA rep 96.1 0.034 7.3E-07 55.9 9.6 58 183-241 94-155 (316)
252 KOG0728 26S proteasome regulat 96.0 0.15 3.3E-06 47.9 12.8 133 182-335 178-331 (404)
253 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.024 5.1E-07 54.7 8.0 49 183-235 19-67 (237)
254 PTZ00301 uridine kinase; Provi 96.0 0.013 2.9E-07 55.1 6.0 23 185-207 3-25 (210)
255 PTZ00035 Rad51 protein; Provis 96.0 0.049 1.1E-06 55.3 10.6 58 183-241 116-177 (337)
256 PRK12727 flagellar biosynthesi 96.0 0.032 7E-07 59.1 9.4 89 184-276 349-439 (559)
257 PTZ00494 tuzin-like protein; P 96.0 0.43 9.4E-06 49.1 16.8 163 160-334 373-543 (664)
258 cd01122 GP4d_helicase GP4d_hel 96.0 0.061 1.3E-06 53.0 11.1 54 184-240 29-82 (271)
259 TIGR00959 ffh signal recogniti 96.0 0.023 4.9E-07 59.4 8.2 26 183-208 97-122 (428)
260 KOG1051 Chaperone HSP104 and r 96.0 0.056 1.2E-06 60.6 11.6 117 161-290 565-685 (898)
261 PRK07667 uridine kinase; Provi 96.0 0.015 3.2E-07 54.2 6.2 38 167-208 3-40 (193)
262 COG1223 Predicted ATPase (AAA+ 96.0 0.07 1.5E-06 50.6 10.4 155 161-336 124-298 (368)
263 cd03246 ABCC_Protease_Secretio 96.0 0.027 5.9E-07 51.4 7.8 23 185-207 28-50 (173)
264 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.033 7.2E-07 53.4 8.5 123 185-309 30-203 (254)
265 PF00154 RecA: recA bacterial 96.0 0.023 4.9E-07 56.7 7.7 87 183-276 51-142 (322)
266 PF12775 AAA_7: P-loop contain 96.0 0.0062 1.3E-07 59.9 3.7 34 168-208 23-56 (272)
267 PF13238 AAA_18: AAA domain; P 96.0 0.0052 1.1E-07 52.8 2.8 21 188-208 1-21 (129)
268 PRK10867 signal recognition pa 95.9 0.025 5.4E-07 59.1 8.1 25 183-207 98-122 (433)
269 cd03115 SRP The signal recogni 95.9 0.032 6.8E-07 50.9 8.0 22 187-208 2-23 (173)
270 cd03222 ABC_RNaseL_inhibitor T 95.9 0.041 9E-07 50.3 8.6 109 184-309 24-136 (177)
271 COG4618 ArpD ABC-type protease 95.9 0.029 6.4E-07 58.1 8.1 23 185-207 362-384 (580)
272 cd01121 Sms Sms (bacterial rad 95.9 0.043 9.2E-07 56.4 9.4 86 183-276 80-169 (372)
273 PRK11608 pspF phage shock prot 95.9 0.028 6.1E-07 57.0 8.1 43 161-207 9-51 (326)
274 TIGR00064 ftsY signal recognit 95.9 0.042 9.2E-07 54.0 9.1 91 183-276 70-165 (272)
275 PRK10733 hflB ATP-dependent me 95.9 0.047 1E-06 60.7 10.4 130 186-336 186-336 (644)
276 PF13671 AAA_33: AAA domain; P 95.9 0.0068 1.5E-07 53.3 3.2 21 187-207 1-21 (143)
277 TIGR01069 mutS2 MutS2 family p 95.9 0.007 1.5E-07 68.1 3.9 176 184-375 321-508 (771)
278 cd02025 PanK Pantothenate kina 95.8 0.037 8E-07 52.6 8.3 22 187-208 1-22 (220)
279 COG1102 Cmk Cytidylate kinase 95.8 0.012 2.7E-07 51.5 4.4 44 187-243 2-45 (179)
280 PRK05800 cobU adenosylcobinami 95.8 0.0062 1.3E-07 55.3 2.8 81 187-274 3-85 (170)
281 COG2884 FtsE Predicted ATPase 95.8 0.059 1.3E-06 48.8 8.7 61 251-312 141-204 (223)
282 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.014 3.1E-07 55.1 5.2 122 185-311 29-160 (213)
283 COG1066 Sms Predicted ATP-depe 95.8 0.05 1.1E-06 55.1 9.0 97 167-276 79-179 (456)
284 COG0563 Adk Adenylate kinase a 95.8 0.015 3.4E-07 53.1 5.2 22 187-208 2-23 (178)
285 PRK05480 uridine/cytidine kina 95.8 0.0077 1.7E-07 56.9 3.3 26 183-208 4-29 (209)
286 TIGR00554 panK_bact pantothena 95.8 0.057 1.2E-06 53.4 9.4 80 183-265 60-141 (290)
287 cd03230 ABC_DR_subfamily_A Thi 95.8 0.033 7.3E-07 50.8 7.4 119 185-309 26-159 (173)
288 cd02019 NK Nucleoside/nucleoti 95.7 0.0073 1.6E-07 45.7 2.5 22 187-208 1-22 (69)
289 TIGR02974 phageshock_pspF psp 95.7 0.045 9.7E-07 55.5 8.9 43 161-207 2-44 (329)
290 PF01583 APS_kinase: Adenylyls 95.7 0.013 2.7E-07 52.0 4.3 36 185-222 2-37 (156)
291 PRK05439 pantothenate kinase; 95.7 0.079 1.7E-06 52.8 10.2 82 182-266 83-166 (311)
292 PF08433 KTI12: Chromatin asso 95.7 0.031 6.8E-07 54.7 7.3 23 186-208 2-24 (270)
293 PF03308 ArgK: ArgK protein; 95.7 0.021 4.5E-07 54.5 5.7 60 166-229 14-73 (266)
294 cd02028 UMPK_like Uridine mono 95.7 0.025 5.3E-07 52.0 6.1 22 187-208 1-22 (179)
295 PRK06762 hypothetical protein; 95.6 0.0087 1.9E-07 54.2 2.9 24 185-208 2-25 (166)
296 TIGR01650 PD_CobS cobaltochela 95.6 0.14 3E-06 51.2 11.3 22 186-207 65-86 (327)
297 TIGR01425 SRP54_euk signal rec 95.6 0.096 2.1E-06 54.5 10.6 26 183-208 98-123 (429)
298 cd01878 HflX HflX subfamily. 95.5 0.025 5.4E-07 53.1 5.9 57 130-209 9-65 (204)
299 PRK06547 hypothetical protein; 95.5 0.017 3.7E-07 52.6 4.5 26 183-208 13-38 (172)
300 PRK04328 hypothetical protein; 95.5 0.036 7.7E-07 53.9 7.1 41 183-225 21-61 (249)
301 PRK00889 adenylylsulfate kinas 95.5 0.039 8.4E-07 50.4 6.9 25 184-208 3-27 (175)
302 TIGR00235 udk uridine kinase. 95.5 0.01 2.2E-07 56.0 3.1 26 183-208 4-29 (207)
303 COG0464 SpoVK ATPases of the A 95.5 0.091 2E-06 56.7 10.8 133 183-336 274-424 (494)
304 cd03229 ABC_Class3 This class 95.5 0.041 8.8E-07 50.5 6.9 23 185-207 26-48 (178)
305 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.028 6.1E-07 52.7 5.9 121 184-312 28-158 (204)
306 KOG0736 Peroxisome assembly fa 95.4 0.14 3.1E-06 55.7 11.4 96 161-277 675-776 (953)
307 PF00910 RNA_helicase: RNA hel 95.4 0.0087 1.9E-07 49.8 2.0 21 188-208 1-21 (107)
308 PF06745 KaiC: KaiC; InterPro 95.4 0.024 5.1E-07 54.3 5.2 87 183-274 17-124 (226)
309 PRK09519 recA DNA recombinatio 95.4 0.046 9.9E-07 60.9 8.0 86 183-275 58-148 (790)
310 PRK08533 flagellar accessory p 95.3 0.08 1.7E-06 50.8 8.6 49 184-236 23-71 (230)
311 PRK07276 DNA polymerase III su 95.3 0.86 1.9E-05 45.0 15.9 70 263-333 102-173 (290)
312 KOG0652 26S proteasome regulat 95.3 0.47 1E-05 45.0 13.1 47 161-207 174-227 (424)
313 TIGR02858 spore_III_AA stage I 95.3 0.083 1.8E-06 51.8 8.7 116 184-309 110-233 (270)
314 cd02027 APSK Adenosine 5'-phos 95.3 0.047 1E-06 48.4 6.5 22 187-208 1-22 (149)
315 KOG0729 26S proteasome regulat 95.3 0.019 4.1E-07 54.3 3.9 46 162-207 181-233 (435)
316 COG0467 RAD55 RecA-superfamily 95.3 0.039 8.4E-07 54.1 6.4 42 183-226 21-62 (260)
317 TIGR00708 cobA cob(I)alamin ad 95.3 0.074 1.6E-06 48.0 7.5 119 185-305 5-140 (173)
318 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.064 1.4E-06 48.0 7.3 119 185-310 25-145 (157)
319 cd03215 ABC_Carb_Monos_II This 95.3 0.072 1.6E-06 49.0 7.8 24 185-208 26-49 (182)
320 PF10236 DAP3: Mitochondrial r 95.2 0.14 3E-06 51.4 10.4 49 316-365 258-306 (309)
321 PRK00409 recombination and DNA 95.2 0.014 3E-07 66.0 3.5 179 183-375 325-513 (782)
322 PHA00729 NTP-binding motif con 95.2 0.021 4.6E-07 53.8 4.1 25 184-208 16-40 (226)
323 COG1126 GlnQ ABC-type polar am 95.2 0.18 3.9E-06 46.7 10.0 126 184-312 27-203 (240)
324 COG1419 FlhF Flagellar GTP-bin 95.2 0.12 2.7E-06 52.6 9.8 90 184-276 202-292 (407)
325 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.076 1.7E-06 50.9 8.2 41 183-225 18-58 (229)
326 TIGR01360 aden_kin_iso1 adenyl 95.2 0.015 3.2E-07 53.8 3.1 24 184-207 2-25 (188)
327 TIGR00150 HI0065_YjeE ATPase, 95.2 0.03 6.5E-07 48.3 4.7 41 165-209 6-46 (133)
328 COG1703 ArgK Putative periplas 95.2 0.026 5.7E-07 54.7 4.7 65 168-236 38-102 (323)
329 cd02024 NRK1 Nicotinamide ribo 95.2 0.038 8.2E-07 50.9 5.6 22 187-208 1-22 (187)
330 KOG0735 AAA+-type ATPase [Post 95.2 0.3 6.5E-06 52.8 12.8 130 185-335 701-848 (952)
331 PRK05917 DNA polymerase III su 95.2 0.2 4.3E-06 49.4 10.8 130 168-322 7-154 (290)
332 PRK04040 adenylate kinase; Pro 95.2 0.016 3.4E-07 53.7 3.0 23 185-207 2-24 (188)
333 PF07726 AAA_3: ATPase family 95.1 0.011 2.3E-07 50.2 1.7 27 188-216 2-28 (131)
334 PTZ00088 adenylate kinase 1; P 95.1 0.02 4.3E-07 54.7 3.8 22 187-208 8-29 (229)
335 PF13481 AAA_25: AAA domain; P 95.1 0.097 2.1E-06 48.5 8.4 41 186-226 33-81 (193)
336 PRK14721 flhF flagellar biosyn 95.1 0.11 2.4E-06 54.0 9.4 88 184-274 190-278 (420)
337 PRK03839 putative kinase; Prov 95.1 0.015 3.2E-07 53.5 2.8 22 187-208 2-23 (180)
338 PRK05973 replicative DNA helic 95.1 0.12 2.6E-06 49.4 9.0 50 183-236 62-111 (237)
339 PRK06731 flhF flagellar biosyn 95.1 0.17 3.7E-06 49.5 10.2 91 184-277 74-166 (270)
340 PF03193 DUF258: Protein of un 95.1 0.035 7.6E-07 49.5 4.9 36 164-208 23-58 (161)
341 PRK11823 DNA repair protein Ra 95.1 0.08 1.7E-06 56.0 8.5 98 167-276 66-167 (446)
342 TIGR03878 thermo_KaiC_2 KaiC d 95.1 0.072 1.6E-06 52.1 7.6 41 183-225 34-74 (259)
343 PF03205 MobB: Molybdopterin g 95.1 0.032 6.9E-07 48.9 4.6 39 186-225 1-39 (140)
344 cd03244 ABCC_MRP_domain2 Domai 95.1 0.16 3.4E-06 48.3 9.8 23 185-207 30-52 (221)
345 PRK14723 flhF flagellar biosyn 95.1 0.14 3.1E-06 56.9 10.5 24 185-208 185-208 (767)
346 COG0396 sufC Cysteine desulfur 95.1 0.14 3E-06 47.9 8.8 25 185-209 30-54 (251)
347 PRK00131 aroK shikimate kinase 95.1 0.018 4E-07 52.4 3.2 25 184-208 3-27 (175)
348 TIGR03575 selen_PSTK_euk L-ser 95.0 0.07 1.5E-06 53.9 7.5 21 188-208 2-22 (340)
349 PRK10923 glnG nitrogen regulat 95.0 0.32 6.9E-06 52.2 13.2 45 160-208 140-184 (469)
350 TIGR00416 sms DNA repair prote 95.0 0.14 2.9E-06 54.4 10.0 98 167-276 80-181 (454)
351 PF00006 ATP-synt_ab: ATP synt 95.0 0.06 1.3E-06 50.8 6.6 83 185-274 15-114 (215)
352 PRK03846 adenylylsulfate kinas 95.0 0.063 1.4E-06 50.2 6.8 25 183-207 22-46 (198)
353 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.1 2.3E-06 48.8 8.2 25 184-208 25-49 (200)
354 COG1936 Predicted nucleotide k 95.0 0.018 3.9E-07 51.2 2.7 20 187-206 2-21 (180)
355 TIGR02322 phosphon_PhnN phosph 95.0 0.018 3.9E-07 52.8 2.9 23 186-208 2-24 (179)
356 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.26 5.7E-06 46.3 10.9 24 184-207 33-56 (207)
357 TIGR02655 circ_KaiC circadian 94.9 0.11 2.4E-06 55.7 9.1 61 167-235 249-309 (484)
358 PF00625 Guanylate_kin: Guanyl 94.9 0.03 6.6E-07 51.6 4.2 36 185-222 2-37 (183)
359 cd00984 DnaB_C DnaB helicase C 94.9 0.17 3.7E-06 48.8 9.7 53 184-239 12-64 (242)
360 cd02023 UMPK Uridine monophosp 94.9 0.017 3.6E-07 54.1 2.4 21 187-207 1-21 (198)
361 PRK15453 phosphoribulokinase; 94.9 0.15 3.3E-06 49.7 9.0 25 183-207 3-27 (290)
362 PRK06995 flhF flagellar biosyn 94.9 0.11 2.4E-06 55.0 8.7 88 185-275 256-344 (484)
363 TIGR03600 phage_DnaB phage rep 94.9 1.3 2.9E-05 46.7 17.0 55 184-241 193-247 (421)
364 COG1428 Deoxynucleoside kinase 94.9 0.019 4E-07 52.9 2.6 25 185-209 4-28 (216)
365 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.017 3.7E-07 53.2 2.4 21 187-207 1-21 (183)
366 cd00227 CPT Chloramphenicol (C 94.8 0.022 4.8E-07 52.1 3.1 22 186-207 3-24 (175)
367 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.04 8.6E-07 55.2 4.9 48 160-207 63-110 (358)
368 PRK00625 shikimate kinase; Pro 94.8 0.019 4.2E-07 52.2 2.6 22 187-208 2-23 (173)
369 TIGR01420 pilT_fam pilus retra 94.8 0.035 7.7E-07 56.7 4.8 112 185-308 122-233 (343)
370 cd02021 GntK Gluconate kinase 94.8 0.019 4.2E-07 50.9 2.5 22 187-208 1-22 (150)
371 PRK05986 cob(I)alamin adenolsy 94.8 0.07 1.5E-06 48.9 6.1 119 185-305 22-158 (191)
372 PRK10751 molybdopterin-guanine 94.8 0.027 5.9E-07 51.0 3.4 26 183-208 4-29 (173)
373 PRK10463 hydrogenase nickel in 94.8 0.12 2.6E-06 50.8 8.0 89 182-276 101-195 (290)
374 PRK05595 replicative DNA helic 94.8 2.6 5.5E-05 44.8 18.8 56 184-242 200-255 (444)
375 PF13245 AAA_19: Part of AAA d 94.7 0.052 1.1E-06 41.9 4.4 22 185-206 10-31 (76)
376 cd01135 V_A-ATPase_B V/A-type 94.7 0.099 2.1E-06 50.9 7.3 92 184-275 68-176 (276)
377 cd03285 ABC_MSH2_euk MutS2 hom 94.7 0.036 7.7E-07 52.8 4.1 122 184-312 29-160 (222)
378 TIGR03263 guanyl_kin guanylate 94.7 0.025 5.3E-07 52.0 3.0 22 186-207 2-23 (180)
379 smart00534 MUTSac ATPase domai 94.7 0.15 3.4E-06 47.0 8.3 120 187-312 1-129 (185)
380 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.066 1.4E-06 54.8 6.3 83 182-279 59-141 (362)
381 cd03243 ABC_MutS_homologs The 94.6 0.03 6.4E-07 52.6 3.5 22 186-207 30-51 (202)
382 PRK06002 fliI flagellum-specif 94.6 0.12 2.6E-06 54.0 8.1 87 184-275 164-264 (450)
383 PF03266 NTPase_1: NTPase; In 94.6 0.024 5.2E-07 51.4 2.6 21 188-208 2-22 (168)
384 KOG0727 26S proteasome regulat 94.6 0.036 7.7E-07 52.1 3.7 47 162-208 159-212 (408)
385 PF08477 Miro: Miro-like prote 94.6 0.027 5.9E-07 47.6 2.8 22 188-209 2-23 (119)
386 cd03213 ABCG_EPDR ABCG transpo 94.6 0.2 4.3E-06 46.6 8.9 24 184-207 34-57 (194)
387 PRK05748 replicative DNA helic 94.6 2.1 4.6E-05 45.5 17.7 56 183-241 201-256 (448)
388 PRK09280 F0F1 ATP synthase sub 94.6 0.13 2.9E-06 53.8 8.3 90 184-274 143-247 (463)
389 PRK10416 signal recognition pa 94.5 0.13 2.7E-06 51.8 7.8 26 183-208 112-137 (318)
390 PRK08972 fliI flagellum-specif 94.5 0.14 2.9E-06 53.3 8.1 88 184-275 161-262 (444)
391 cd01124 KaiC KaiC is a circadi 94.5 0.042 9.1E-07 50.7 4.1 45 187-235 1-45 (187)
392 PRK14737 gmk guanylate kinase; 94.5 0.031 6.8E-07 51.6 3.2 25 184-208 3-27 (186)
393 PRK00300 gmk guanylate kinase; 94.4 0.032 7E-07 52.4 3.3 25 184-208 4-28 (205)
394 KOG0743 AAA+-type ATPase [Post 94.4 0.76 1.7E-05 47.4 13.1 23 186-208 236-258 (457)
395 PRK12597 F0F1 ATP synthase sub 94.4 0.11 2.4E-06 54.6 7.3 91 184-275 142-247 (461)
396 TIGR03522 GldA_ABC_ATP gliding 94.4 0.2 4.3E-06 50.2 9.0 24 185-208 28-51 (301)
397 TIGR00390 hslU ATP-dependent p 94.4 0.11 2.3E-06 53.6 7.0 48 161-208 15-70 (441)
398 cd02020 CMPK Cytidine monophos 94.4 0.027 5.9E-07 49.6 2.4 21 187-207 1-21 (147)
399 PRK05636 replicative DNA helic 94.4 2 4.3E-05 46.2 16.8 56 183-241 263-318 (505)
400 COG0529 CysC Adenylylsulfate k 94.3 0.086 1.9E-06 47.1 5.4 25 183-207 21-45 (197)
401 PRK06217 hypothetical protein; 94.3 0.03 6.4E-07 51.7 2.6 22 187-208 3-24 (183)
402 TIGR03498 FliI_clade3 flagella 94.3 0.15 3.3E-06 53.0 8.0 88 184-275 139-240 (418)
403 PRK10820 DNA-binding transcrip 94.3 0.15 3.2E-06 55.3 8.3 43 161-207 207-249 (520)
404 PRK14738 gmk guanylate kinase; 94.3 0.043 9.4E-07 51.6 3.6 25 183-207 11-35 (206)
405 COG2019 AdkA Archaeal adenylat 94.2 0.039 8.5E-07 48.7 3.0 23 185-207 4-26 (189)
406 KOG3347 Predicted nucleotide k 94.2 0.031 6.8E-07 48.2 2.3 24 184-207 6-29 (176)
407 PRK12339 2-phosphoglycerate ki 94.2 0.037 8E-07 51.6 3.1 24 185-208 3-26 (197)
408 PF13086 AAA_11: AAA domain; P 94.2 0.067 1.4E-06 51.1 5.0 21 187-207 19-39 (236)
409 COG2842 Uncharacterized ATPase 94.2 0.43 9.3E-06 46.5 10.2 96 186-290 95-190 (297)
410 KOG1532 GTPase XAB1, interacts 94.2 0.042 9.1E-07 52.3 3.3 64 182-245 16-88 (366)
411 cd01136 ATPase_flagellum-secre 94.2 0.27 5.9E-06 49.4 9.3 86 184-275 68-169 (326)
412 PRK06793 fliI flagellum-specif 94.2 0.18 3.9E-06 52.5 8.2 90 184-276 155-257 (432)
413 TIGR02868 CydC thiol reductant 94.2 0.16 3.5E-06 55.3 8.4 25 183-207 359-383 (529)
414 PRK12678 transcription termina 94.1 0.11 2.4E-06 55.3 6.6 26 183-208 414-439 (672)
415 cd00071 GMPK Guanosine monopho 94.1 0.035 7.5E-07 48.5 2.5 22 187-208 1-22 (137)
416 KOG0726 26S proteasome regulat 94.1 0.22 4.8E-06 48.0 7.9 26 182-207 216-241 (440)
417 PRK10078 ribose 1,5-bisphospho 94.1 0.039 8.4E-07 51.0 3.0 23 186-208 3-25 (186)
418 PRK13947 shikimate kinase; Pro 94.1 0.035 7.5E-07 50.5 2.6 21 187-207 3-23 (171)
419 PLN02348 phosphoribulokinase 94.1 0.23 4.9E-06 50.9 8.6 27 182-208 46-72 (395)
420 TIGR00073 hypB hydrogenase acc 94.1 0.039 8.5E-07 52.0 3.0 27 182-208 19-45 (207)
421 PRK14530 adenylate kinase; Pro 94.0 0.038 8.2E-07 52.4 2.8 22 186-207 4-25 (215)
422 PRK14527 adenylate kinase; Pro 94.0 0.043 9.4E-07 51.0 3.2 25 184-208 5-29 (191)
423 cd02029 PRK_like Phosphoribulo 94.0 0.16 3.6E-06 49.1 7.1 78 187-266 1-85 (277)
424 PTZ00185 ATPase alpha subunit; 94.0 0.32 6.9E-06 51.3 9.6 91 184-276 188-300 (574)
425 PRK13949 shikimate kinase; Pro 94.0 0.037 8E-07 50.3 2.6 22 187-208 3-24 (169)
426 cd01672 TMPK Thymidine monopho 94.0 0.11 2.4E-06 48.3 5.9 22 187-208 2-23 (200)
427 COG0003 ArsA Predicted ATPase 94.0 0.085 1.8E-06 52.8 5.3 48 185-234 2-49 (322)
428 TIGR01313 therm_gnt_kin carboh 94.0 0.033 7.1E-07 50.2 2.2 21 188-208 1-21 (163)
429 COG0714 MoxR-like ATPases [Gen 94.0 0.11 2.3E-06 53.0 6.1 62 160-234 26-87 (329)
430 COG2401 ABC-type ATPase fused 94.0 0.046 9.9E-07 55.2 3.3 60 255-314 515-577 (593)
431 KOG0739 AAA+-type ATPase [Post 94.0 0.67 1.5E-05 45.0 10.9 175 161-361 136-334 (439)
432 KOG0651 26S proteasome regulat 94.0 0.13 2.9E-06 50.0 6.2 26 182-207 163-188 (388)
433 COG0465 HflB ATP-dependent Zn 94.0 0.44 9.5E-06 51.4 10.8 95 161-276 153-253 (596)
434 PRK08149 ATP synthase SpaL; Va 94.0 0.16 3.5E-06 52.9 7.4 86 184-275 150-251 (428)
435 PF02374 ArsA_ATPase: Anion-tr 94.0 0.076 1.6E-06 53.2 4.9 22 186-207 2-23 (305)
436 COG0194 Gmk Guanylate kinase [ 93.9 0.048 1E-06 49.3 3.1 24 185-208 4-27 (191)
437 TIGR00176 mobB molybdopterin-g 93.9 0.058 1.3E-06 48.2 3.6 35 187-222 1-35 (155)
438 COG3640 CooC CO dehydrogenase 93.9 0.086 1.9E-06 49.4 4.8 21 187-207 2-22 (255)
439 cd00820 PEPCK_HprK Phosphoenol 93.9 0.054 1.2E-06 44.7 3.1 22 185-206 15-36 (107)
440 PF06309 Torsin: Torsin; Inte 93.9 0.09 2E-06 44.5 4.4 40 166-208 37-76 (127)
441 cd00464 SK Shikimate kinase (S 93.9 0.042 9.1E-07 48.9 2.6 20 188-207 2-21 (154)
442 PRK13545 tagH teichoic acids e 93.8 0.37 8.1E-06 51.4 9.9 24 185-208 50-73 (549)
443 PRK07594 type III secretion sy 93.8 0.25 5.4E-06 51.6 8.5 89 183-275 153-255 (433)
444 PRK08506 replicative DNA helic 93.8 3.2 7E-05 44.3 17.2 56 183-242 190-245 (472)
445 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.2 4.3E-06 52.4 7.7 91 184-275 137-242 (449)
446 PRK05922 type III secretion sy 93.8 0.35 7.6E-06 50.4 9.5 88 184-275 156-257 (434)
447 COG4133 CcmA ABC-type transpor 93.8 0.46 1E-05 43.1 8.9 22 186-207 29-50 (209)
448 PF12061 DUF3542: Protein of u 93.7 0.21 4.6E-06 48.5 7.1 73 12-84 298-373 (402)
449 PRK08927 fliI flagellum-specif 93.7 0.29 6.2E-06 51.2 8.7 88 184-275 157-258 (442)
450 COG4240 Predicted kinase [Gene 93.7 0.25 5.4E-06 46.0 7.3 84 183-267 48-135 (300)
451 COG1124 DppF ABC-type dipeptid 93.7 0.05 1.1E-06 51.2 2.9 24 184-207 32-55 (252)
452 PF13521 AAA_28: AAA domain; P 93.7 0.043 9.2E-07 49.5 2.4 20 188-207 2-21 (163)
453 cd01132 F1_ATPase_alpha F1 ATP 93.7 0.14 3E-06 49.8 6.0 86 184-275 68-171 (274)
454 TIGR00041 DTMP_kinase thymidyl 93.7 0.13 2.9E-06 47.8 5.8 23 186-208 4-26 (195)
455 PRK05057 aroK shikimate kinase 93.7 0.054 1.2E-06 49.3 3.0 24 185-208 4-27 (172)
456 cd00544 CobU Adenosylcobinamid 93.7 0.26 5.5E-06 44.7 7.4 79 188-274 2-82 (169)
457 PRK13975 thymidylate kinase; P 93.7 0.049 1.1E-06 50.7 2.8 23 186-208 3-25 (196)
458 cd01129 PulE-GspE PulE/GspE Th 93.7 0.11 2.4E-06 50.9 5.4 82 185-277 80-161 (264)
459 PLN02200 adenylate kinase fami 93.7 0.053 1.1E-06 52.1 3.0 24 184-207 42-65 (234)
460 PRK05201 hslU ATP-dependent pr 93.7 0.16 3.5E-06 52.3 6.7 48 161-208 18-73 (443)
461 PRK13948 shikimate kinase; Pro 93.6 0.061 1.3E-06 49.4 3.3 25 183-207 8-32 (182)
462 PLN02796 D-glycerate 3-kinase 93.6 0.63 1.4E-05 46.9 10.7 26 183-208 98-123 (347)
463 PRK11388 DNA-binding transcrip 93.6 0.23 4.9E-06 55.5 8.5 45 160-208 327-371 (638)
464 cd03280 ABC_MutS2 MutS2 homolo 93.6 0.054 1.2E-06 50.7 3.0 21 186-206 29-49 (200)
465 TIGR00455 apsK adenylylsulfate 93.6 0.14 3.1E-06 47.1 5.8 26 183-208 16-41 (184)
466 PRK06761 hypothetical protein; 93.6 0.1 2.2E-06 51.3 4.9 23 186-208 4-26 (282)
467 PRK10875 recD exonuclease V su 93.6 0.23 5E-06 54.5 8.2 22 186-207 168-189 (615)
468 cd03287 ABC_MSH3_euk MutS3 hom 93.6 0.44 9.6E-06 45.2 9.1 120 184-311 30-160 (222)
469 COG0541 Ffh Signal recognition 93.6 0.55 1.2E-05 48.2 10.1 58 183-243 98-157 (451)
470 CHL00206 ycf2 Ycf2; Provisiona 93.6 0.37 8E-06 58.2 10.1 26 183-208 1628-1653(2281)
471 PF00005 ABC_tran: ABC transpo 93.6 0.062 1.3E-06 46.7 3.1 24 185-208 11-34 (137)
472 PRK13765 ATP-dependent proteas 93.5 0.14 3.1E-06 56.2 6.4 72 161-242 34-105 (637)
473 TIGR00665 DnaB replicative DNA 93.5 3.5 7.6E-05 43.7 16.9 55 184-241 194-248 (434)
474 PF13555 AAA_29: P-loop contai 93.5 0.077 1.7E-06 38.9 2.9 22 186-207 24-45 (62)
475 PRK08006 replicative DNA helic 93.5 0.79 1.7E-05 48.9 11.8 56 183-241 222-277 (471)
476 COG4181 Predicted ABC-type tra 93.5 1.1 2.4E-05 40.0 10.5 84 228-312 122-214 (228)
477 TIGR03496 FliI_clade1 flagella 93.4 0.28 6.1E-06 51.0 8.0 87 184-274 136-236 (411)
478 PRK06936 type III secretion sy 93.4 0.37 8.1E-06 50.3 8.8 86 184-275 161-262 (439)
479 PRK11160 cysteine/glutathione 93.4 0.51 1.1E-05 52.0 10.6 24 184-207 365-388 (574)
480 PRK09099 type III secretion sy 93.3 0.3 6.5E-06 51.2 8.1 89 184-275 162-263 (441)
481 PRK05342 clpX ATP-dependent pr 93.3 0.12 2.5E-06 54.0 5.1 47 161-207 74-130 (412)
482 PRK08356 hypothetical protein; 93.3 0.072 1.6E-06 49.7 3.3 21 186-206 6-26 (195)
483 TIGR01967 DEAH_box_HrpA ATP-de 93.3 0.63 1.4E-05 55.0 11.5 69 164-242 69-137 (1283)
484 TIGR01039 atpD ATP synthase, F 93.3 0.39 8.4E-06 50.3 8.8 91 184-275 142-247 (461)
485 PRK15064 ABC transporter ATP-b 93.3 0.56 1.2E-05 51.1 10.7 24 185-208 27-50 (530)
486 TIGR01818 ntrC nitrogen regula 93.3 0.38 8.1E-06 51.5 9.2 133 160-305 136-279 (463)
487 TIGR00764 lon_rel lon-related 93.2 0.2 4.4E-06 55.1 7.0 70 161-241 21-91 (608)
488 PF01926 MMR_HSR1: 50S ribosom 93.2 0.075 1.6E-06 44.7 3.0 21 188-208 2-22 (116)
489 PRK13946 shikimate kinase; Pro 93.2 0.07 1.5E-06 49.2 3.0 25 184-208 9-33 (184)
490 PF03796 DnaB_C: DnaB-like hel 93.2 0.21 4.5E-06 48.8 6.5 56 185-243 19-74 (259)
491 COG1116 TauB ABC-type nitrate/ 93.2 0.069 1.5E-06 50.7 2.9 24 184-207 28-51 (248)
492 PRK15115 response regulator Gl 93.2 0.44 9.5E-06 50.7 9.5 44 161-208 137-180 (444)
493 TIGR02788 VirB11 P-type DNA tr 93.2 0.12 2.5E-06 52.0 4.7 112 185-307 144-255 (308)
494 PRK09825 idnK D-gluconate kina 93.1 0.07 1.5E-06 48.8 2.9 22 186-207 4-25 (176)
495 PRK09302 circadian clock prote 93.1 0.3 6.6E-06 52.9 8.2 87 183-274 271-372 (509)
496 TIGR03574 selen_PSTK L-seryl-t 93.1 0.058 1.3E-06 52.5 2.4 22 187-208 1-22 (249)
497 PF06414 Zeta_toxin: Zeta toxi 93.1 0.095 2.1E-06 49.0 3.8 103 182-290 12-116 (199)
498 PF03029 ATP_bind_1: Conserved 93.1 0.062 1.3E-06 51.7 2.5 21 190-210 1-21 (238)
499 COG5635 Predicted NTPase (NACH 93.1 0.069 1.5E-06 61.2 3.3 139 185-328 222-371 (824)
500 COG1100 GTPase SAR1 and relate 93.1 0.066 1.4E-06 50.7 2.7 24 186-209 6-29 (219)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7e-71 Score=609.17 Aligned_cols=534 Identities=31% Similarity=0.505 Sum_probs=421.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045012 7 VLSASFELLIKKLASLELFTQHEKLKAGFLKWKDNMEMIQAVLADADDRQTNDKSVKKWLDMLQNLAYDVEDILDEFETE 86 (576)
Q Consensus 7 ~~s~~~~~l~~~l~~~~~~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~v~~Wl~~lr~~ayd~eD~lD~~~~~ 86 (576)
.+|..++++.+.+.. + +....++++.+..|+++|..++++++|++.++.....+..|...+++++|++||.++.|..+
T Consensus 4 ~~s~~~~~~~~~l~~-~-~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNR-E-SECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred EEEEehhhHHHHHHH-H-HHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555553332 1 23334677899999999999999999999999889999999999999999999999999998
Q ss_pred HHHHhhhcCCCccccCCCCcccccccccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhcCCc----------
Q 045012 87 ALRRNFLLQEPAAAEQPCTCTSKFRKIIPTCFTNFSPRSIQFDSMMVSKMEEVTARLQDIERRKDLLNLK---------- 156 (576)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~---------- 156 (576)
....+.. +-- .......+.+ |.. .+.+..+..+..+..++..+.+..+.++..
T Consensus 82 ~~~~~~~-~~l-------~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~ 144 (889)
T KOG4658|consen 82 EIERKAN-DLL-------STRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL 144 (889)
T ss_pred HHHHHHh-HHh-------hhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc
Confidence 8765432 100 0000011111 111 123333333333333333333333222210
Q ss_pred ----------cccc--cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccc-hhccccceEEEEe
Q 045012 157 ----------NVIS--DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDR-VQRHFEIKAWTCV 223 (576)
Q Consensus 157 ----------~~~~--vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 223 (576)
..+. ||.+..++++.+.|..++ ..+++|+||||+||||||++++|+.. +..+|+.++||+|
T Consensus 145 ~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V 218 (889)
T KOG4658|consen 145 DPREKVETRPIQSESDVGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV 218 (889)
T ss_pred cchhhcccCCCCccccccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE
Confidence 0011 899999999999998653 38999999999999999999999987 9999999999999
Q ss_pred CCCCChhHHHHHHHHhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe
Q 045012 224 SEDFDVSRVTQSILKSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 224 ~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 302 (576)
|+.++...+..+|+..++..... .....++++..+.+.|+++||||||||||+. .+|+.+..++|....||+|++||
T Consensus 219 Sk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 219 SKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred cccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEe
Confidence 99999999999999999875442 2233478899999999999999999999997 46999999999998999999999
Q ss_pred cchHHHHh-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhH
Q 045012 303 RNQDVAAT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDW 381 (576)
Q Consensus 303 R~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w 381 (576)
|+..|+.. ++....+++..|+++|||+||++.++.... ...+.++++|++++++|+|+|||++++|+.|+.+.+..+|
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW 375 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW 375 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence 99999998 777889999999999999999999987644 3335589999999999999999999999999999999999
Q ss_pred HHHHhhccccC----CCCcccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHH
Q 045012 382 EFVLNTNLWDL----QEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDL 457 (576)
Q Consensus 382 ~~~l~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~ 457 (576)
+.+.+...+.. ++..+.+.+++.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+..++.++++.
T Consensus 376 ~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 376 RRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred HHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 99998765442 23346799999999999999999999999999999999999999999999999997778899999
Q ss_pred HHHHHHHHHHCCCceeeC--CCcCeEEEchHHHHHHHHHhc-----cccEEEecCC--cccccccCCCCeeEEEEEeCCC
Q 045012 458 GRKFVRELHSRSLFQQSS--KDASRFVMHDLINDLARWAAG-----EQYFRMEDTL--AGENRQKFSQSLHHFSYIRGRY 528 (576)
Q Consensus 458 ~~~~l~~L~~rsll~~~~--~~~~~~~mH~lv~~~a~~~~~-----~e~~~~~~~~--~~~~~~~~~~~~r~lsi~~~~~ 528 (576)
|++|+.+|++++|++... ++..+|.|||+|||+|.++++ ++++++..+. ........+..+||+|++++..
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~ 535 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI 535 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch
Confidence 999999999999999866 356799999999999999999 6766665431 1011233467899999998742
Q ss_pred CCcchhhhccCCCcccEEEeecCCCCCcccchhHhhhhhc-cCCccccC
Q 045012 529 DGDTRLEFICDVQHLRTFLPVKLSDFDKNYLAWSVLQRLL-NLPRLRVF 576 (576)
Q Consensus 529 ~~~~~~~~~~~~~~lrtl~~~~~~~~~~~~~~~~~~~~~~-~~~~LrvL 576 (576)
.......++++|+||++++... -.......+| .|+.||||
T Consensus 536 ---~~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVL 576 (889)
T KOG4658|consen 536 ---EHIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVL 576 (889)
T ss_pred ---hhccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEE
Confidence 2334456788999999998531 0134456678 99999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-45 Score=366.59 Aligned_cols=279 Identities=34% Similarity=0.612 Sum_probs=226.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 163 KEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 163 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
|+.++++|.+.|... .++.++|+|+|+||+||||||.+++++..+..+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~----~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN----SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTT----TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCC----CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 789999999999864 2678999999999999999999999987788999999999999999999999999999988
Q ss_pred CCCC--CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHhhhc-ccceec
Q 045012 243 DHSK--NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRA-VSGKTL 319 (576)
Q Consensus 243 ~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 319 (576)
.... ...+.+.....+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567888999999999999999999999886 4888888877777779999999999988877664 678999
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhccccCC---CCc
Q 045012 320 KELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTNLWDLQ---EDK 396 (576)
Q Consensus 320 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~---~~~ 396 (576)
++|+.++|++||.+.++... ...++...+.+++|+++|+|+||||+++|++|+.+.+..+|..+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 12234456789999999999999999999999776677899998876444332 234
Q ss_pred ccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccC
Q 045012 397 CDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQE 448 (576)
Q Consensus 397 ~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~ 448 (576)
..+..++.+||+.||++.|.||.|||+||+++.|+.+.|+.+|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-38 Score=371.66 Aligned_cols=356 Identities=19% Similarity=0.230 Sum_probs=262.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEe---CCC----------
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV---SED---------- 226 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~---------- 226 (576)
.|||+..++++..+|.-. .+.+++|+|+||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 186 ~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 186 FVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 499999999999988543 35689999999999999999999998 67788998887742 111
Q ss_pred -CC-hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc
Q 045012 227 -FD-VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 227 -~~-~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 304 (576)
++ ...+..+++..+........... ..+++.+.++|+||||||||+. ..|+.+.......++||+||||||+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCc
Confidence 01 12344455554433322111222 4567778999999999999875 5787777666666789999999999
Q ss_pred hHHHHhhhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHH
Q 045012 305 QDVAATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFV 384 (576)
Q Consensus 305 ~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~ 384 (576)
..++..++...+|+++.|+.++||+||+++||+.. .+++.+.+++++|+++|+|+||||+++|+.|+.+ +..+|+.+
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~ 410 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDM 410 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHH
Confidence 99998776778999999999999999999999754 2345688999999999999999999999999987 67899999
Q ss_pred HhhccccCCCCcccchhhhhhhhcCCcH-HHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHH
Q 045012 385 LNTNLWDLQEDKCDIVPALRVSYHFLPP-QLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVR 463 (576)
Q Consensus 385 l~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~ 463 (576)
+++..... +..+..+|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+.... +..++
T Consensus 411 l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~ 473 (1153)
T PLN03210 411 LPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLK 473 (1153)
T ss_pred HHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChH
Confidence 98754432 34699999999999987 5999999999999887553 3677888765432 22389
Q ss_pred HHHHCCCceeeCCCcCeEEEchHHHHHHHHHhcccc-------EEEecCCcc-c-ccccCCCCeeEEEEEeCCCCCcc-h
Q 045012 464 ELHSRSLFQQSSKDASRFVMHDLINDLARWAAGEQY-------FRMEDTLAG-E-NRQKFSQSLHHFSYIRGRYDGDT-R 533 (576)
Q Consensus 464 ~L~~rsll~~~~~~~~~~~mH~lv~~~a~~~~~~e~-------~~~~~~~~~-~-~~~~~~~~~r~lsi~~~~~~~~~-~ 533 (576)
.|+++||++...+ ++.|||++|++|+.+++++. +......-. . .......+++++++..+...... .
T Consensus 474 ~L~~ksLi~~~~~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 474 NLVDKSLIHVRED---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHhcCCEEEcCC---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 9999999987643 69999999999999987653 111110000 0 01122456788887654321100 1
Q ss_pred hhhccCCCcccEEEeec
Q 045012 534 LEFICDVQHLRTFLPVK 550 (576)
Q Consensus 534 ~~~~~~~~~lrtl~~~~ 550 (576)
.....++++||.|-+..
T Consensus 551 ~~aF~~m~~L~~L~~~~ 567 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYT 567 (1153)
T ss_pred HHHHhcCccccEEEEec
Confidence 12345678888877754
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.67 E-value=7.7e-15 Score=170.12 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=181.8
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCC
Q 045012 168 EEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSK 246 (576)
Q Consensus 168 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~ 246 (576)
.+|.+.|.. ....+++.|+|++|.||||++.++... ++.++|+++.. ..++..++..++..+......
T Consensus 20 ~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~ 88 (903)
T PRK04841 20 ERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNG 88 (903)
T ss_pred hHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCc
Confidence 345555532 245789999999999999999998752 23688999964 446677778888877532211
Q ss_pred ------------CCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCChhhhhhhccCCCC-CCCCceEEEEecchHHH---
Q 045012 247 ------------NDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWCTLSCPFGA-GASGSKIVVTHRNQDVA--- 308 (576)
Q Consensus 247 ------------~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~--- 308 (576)
...+...+...+...+. +.+++|||||++..+......+...+.. ..++.++|||||.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~ 168 (903)
T PRK04841 89 HCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIA 168 (903)
T ss_pred ccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchH
Confidence 11223333333333332 6799999999988654444434433333 34567888999984211
Q ss_pred HhhhcccceecC----CCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHH
Q 045012 309 ATMRAVSGKTLK----ELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFV 384 (576)
Q Consensus 309 ~~~~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~ 384 (576)
..........+. +|+.+|+.++|.......- ..+....|++.|+|+|+++..++..+....... ...
T Consensus 169 ~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~ 239 (903)
T PRK04841 169 NLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDS 239 (903)
T ss_pred hHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhh
Confidence 111122344555 9999999999976643211 135678899999999999999987775442110 000
Q ss_pred HhhccccCCC-Ccccchhhhh-hhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHH
Q 045012 385 LNTNLWDLQE-DKCDIVPALR-VSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFV 462 (576)
Q Consensus 385 l~~~~~~~~~-~~~~i~~~l~-~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l 462 (576)
. +.+.. ....+...+. ..|+.||++.+..+..+|+++ .++.+.+-. +... +.+.+.+
T Consensus 240 ~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~--------~~~~~~L 298 (903)
T PRK04841 240 A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE--------ENGQMRL 298 (903)
T ss_pred h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC--------CcHHHHH
Confidence 1 11111 1223555443 348999999999999999997 334332222 1111 1246779
Q ss_pred HHHHHCCCcee-eCCCcCeEEEchHHHHHHHHHh
Q 045012 463 RELHSRSLFQQ-SSKDASRFVMHDLINDLARWAA 495 (576)
Q Consensus 463 ~~L~~rsll~~-~~~~~~~~~mH~lv~~~a~~~~ 495 (576)
++|.+.+++.. .+++...|+.|++++++++...
T Consensus 299 ~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 299 EELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 99999999754 3334458999999999998875
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=4.9e-11 Score=124.79 Aligned_cols=298 Identities=13% Similarity=0.059 Sum_probs=174.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+||++|+++|...|...-. +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..++.+
T Consensus 32 l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 32 LPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 48999999999999855321 2345668899999999999999999854322212334566666666788899999999
Q ss_pred hhCC-CCCCCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCC----hhhhhhhccCCCCCCCC--ceEEEEecchHHHHh
Q 045012 240 IAND-HSKNDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN----YNSWCTLSCPFGAGASG--SKIVVTHRNQDVAAT 310 (576)
Q Consensus 240 l~~~-~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~g--s~ilvTtR~~~v~~~ 310 (576)
+... ......+...+...+.+.+. +++.+||||+++... ...+..+...+.. ..+ ..+|.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhh
Confidence 8763 22133455666677766664 457899999997632 1223333322221 123 235556555433222
Q ss_pred hh-------cccceecCCCChHHHHHHHHHhhhCC--CCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh--c--cC--
Q 045012 311 MR-------AVSGKTLKELSDDDCLRVLIQHSLGA--GVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL--S--VK-- 375 (576)
Q Consensus 311 ~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L--~--~~-- 375 (576)
.. ....+.+.+++.++..+++..++... ...-.+..++.+++......|..+.|+.++-.+. + ..
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 11 12467899999999999998776322 1111222233333333333466777777764432 1 11
Q ss_pred -CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCCC--CCcccHHHHHHH--HHHcCCCccCCC
Q 045012 376 -DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPK--DYEFQEEEIILL--WAAEGFLHQENS 450 (576)
Q Consensus 376 -~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~--~~~i~~~~Li~~--w~aeg~i~~~~~ 450 (576)
-+.+....+.+.. -...+.-.+..||.+.|..+..++..-+ ...+....+... .+++.+-..+
T Consensus 269 ~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~-- 336 (394)
T PRK00411 269 KVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP-- 336 (394)
T ss_pred CcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc--
Confidence 1233444333321 1223455688999999888877664321 134555555433 2222211111
Q ss_pred CCCHHHHHHHHHHHHHHCCCceee
Q 045012 451 GRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 451 ~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
.......+|++.|...|+|...
T Consensus 337 --~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 337 --RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred --CcHHHHHHHHHHHHhcCCeEEE
Confidence 1234467799999999999863
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.42 E-value=1.1e-11 Score=132.22 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=191.3
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCC
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHS 245 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~ 245 (576)
..+|.+.|.. ..+.+++.|..|+|.|||||+.+.+. ....-..+.|.++++ +.++..++..++..++...+
T Consensus 24 R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 3456666643 34679999999999999999999875 122334688999875 45788999999998875433
Q ss_pred C------------CCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCChhhhhhhcc-CCCCCCCCceEEEEecchHHHHh
Q 045012 246 K------------NDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWCTLSC-PFGAGASGSKIVVTHRNQDVAAT 310 (576)
Q Consensus 246 ~------------~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~-~l~~~~~gs~ilvTtR~~~v~~~ 310 (576)
. ...+...+...+...+. .++..+||||.+-........-+. .+....++-.++||||+..-...
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 2 22344445555555443 468999999987644333333222 22334467889999998633221
Q ss_pred h---hcccceecC----CCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHH
Q 045012 311 M---RAVSGKTLK----ELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEF 383 (576)
Q Consensus 311 ~---~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~ 383 (576)
. -....++++ .|+.+|+.++|...... +-.+...+.|.+..+|.+-|+..++=.++.+.+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 1 112233333 58999999999776421 222456788999999999999999988884433222111
Q ss_pred HHhhccccCCCCcccchh-hhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHH
Q 045012 384 VLNTNLWDLQEDKCDIVP-ALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFV 462 (576)
Q Consensus 384 ~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l 462 (576)
. +.+....+.. ...-.++.||+++|..+.-+|+++.- . +.|...- +.++.+...+
T Consensus 249 ~-------LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ng~amL 304 (894)
T COG2909 249 G-------LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEENGQAML 304 (894)
T ss_pred h-------ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCCcHHHHH
Confidence 1 1111112222 23456899999999999999999652 1 2233221 1234477789
Q ss_pred HHHHHCCCce-eeCCCcCeEEEchHHHHHHHHHhcc
Q 045012 463 RELHSRSLFQ-QSSKDASRFVMHDLINDLARWAAGE 497 (576)
Q Consensus 463 ~~L~~rsll~-~~~~~~~~~~mH~lv~~~a~~~~~~ 497 (576)
++|.+++|+- +-++....|+.|+++.||.+.....
T Consensus 305 e~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 305 EELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999999975 4444667999999999999876654
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=3.5e-10 Score=117.10 Aligned_cols=299 Identities=13% Similarity=0.062 Sum_probs=172.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh-ccc---cceEEEEeCCCCChhHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ-RHF---EIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~~~ 235 (576)
.+||++|+++|...|..... +.....+.|+|++|+|||++++.+++..... ... -..+|++.....+...++..
T Consensus 17 l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 48999999999999865321 2345678999999999999999999743211 111 13567777776677889999
Q ss_pred HHHhhh---CCCCCCCCCHHHHHHHHHHhh--cCCeEEEEEeCCCCCC---hhhhhhhccCC-CCCC--CCceEEEEecc
Q 045012 236 ILKSIA---NDHSKNDDDLNLLQEKLKKQL--SGKKFLLVLDDVWNEN---YNSWCTLSCPF-GAGA--SGSKIVVTHRN 304 (576)
Q Consensus 236 il~~l~---~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvTtR~ 304 (576)
|+.++. ...+....+..++...+.+.+ .+++++||||+++... ......+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999984 222212234445555555555 3568899999997652 11122222221 1111 23344555544
Q ss_pred hHHHHhhh-------cccceecCCCChHHHHHHHHHhhhCC-CCCCCCchHHHHHHHHHHhcCCChHHHHHHHH-hh--c
Q 045012 305 QDVAATMR-------AVSGKTLKELSDDDCLRVLIQHSLGA-GVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG-LL--S 373 (576)
Q Consensus 305 ~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~-~L--~ 373 (576)
......+. ....+.+.+.+.++..+++..++... ......++..+....++..+.|.|-.+..+.. +. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33221111 12468899999999999998876411 11112233334556677777898854433222 11 1
Q ss_pred --cC---CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCC--CCCcccHHHHHHHHH--HcCC
Q 045012 374 --VK---DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFP--KDYEFQEEEIILLWA--AEGF 444 (576)
Q Consensus 374 --~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp--~~~~i~~~~Li~~w~--aeg~ 444 (576)
.+ -+.+....+.+.. -.....-++..||.+.+..+..+...- ++..+....+...+- ++.+
T Consensus 255 ~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~ 324 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI 324 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc
Confidence 11 1222222222211 122344567899999887777665321 334466666666331 2211
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHCCCceee
Q 045012 445 LHQENSGRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 445 i~~~~~~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
.. .........+++..|...|++...
T Consensus 325 -~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 325 -GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred -CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 112356688899999999999864
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=1.3e-10 Score=114.83 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=116.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHH----H
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLK----K 260 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~----~ 260 (576)
.+++.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++..|+..++.... ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 468999999999999999999985331 111 12233 33345777889999988876543 222222233333 2
Q ss_pred h-hcCCeEEEEEeCCCCCChhhhhhhccCCC---CCCCCceEEEEecchHHHHhhh----------cccceecCCCChHH
Q 045012 261 Q-LSGKKFLLVLDDVWNENYNSWCTLSCPFG---AGASGSKIVVTHRNQDVAATMR----------AVSGKTLKELSDDD 326 (576)
Q Consensus 261 ~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~e 326 (576)
. ..+++.+||+||+|..+...++.+..... .......|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 26788999999999876666665542211 122233456665433 221111 12467899999999
Q ss_pred HHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 327 CLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 327 a~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
..+++...+...+......-..+..+.|++.|+|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887764332211112235788999999999999999998765
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=8e-11 Score=113.60 Aligned_cols=193 Identities=22% Similarity=0.212 Sum_probs=99.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHH----
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSI---- 236 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i---- 236 (576)
+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. ...-...+|+....... ......+
T Consensus 2 ~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~-~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESN-ESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchh-hhHHHHHHHHH
Confidence 79999999999998653 35789999999999999999999843 22111334444333322 2222222
Q ss_pred ------HHhhhCCCC----------C---CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC------hhhhhhhccCCCC
Q 045012 237 ------LKSIANDHS----------K---NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN------YNSWCTLSCPFGA 291 (576)
Q Consensus 237 ------l~~l~~~~~----------~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~ 291 (576)
...+..... . .......+...+.. .+++++||+||++... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111211100 0 11222333333332 2345999999996643 1111122222221
Q ss_pred --CCCCceEEEEecchHHHHh--------hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 292 --GASGSKIVVTHRNQDVAAT--------MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 292 --~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
......+|+++....+... .+....+.+++|+.+++++++....-.. . .. +.-.+..++|+..+||+
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCC
Confidence 1233445555544444432 1233459999999999999998865433 1 11 12346679999999999
Q ss_pred hHHHHH
Q 045012 362 PLAAKT 367 (576)
Q Consensus 362 PLai~~ 367 (576)
|..|..
T Consensus 228 P~~l~~ 233 (234)
T PF01637_consen 228 PRYLQE 233 (234)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998865
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.22 E-value=2.4e-10 Score=128.63 Aligned_cols=312 Identities=14% Similarity=0.161 Sum_probs=185.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh-ccccceEEEEeCCCCC---hhHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEDFD---VSRVTQSI 236 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~---~~~~~~~i 236 (576)
+||+.|++.|.+.+.... .+...++.+.|.+|||||+|+++|.....-. ..|-...+-....+.. ....++++
T Consensus 3 ~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 3 YGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 799999999999997764 3556699999999999999999998732111 1221111111222221 22344444
Q ss_pred HHhhhCC-------------------CCC--------------CC-------CCHH-----HHHHHHHHhh-cCCeEEEE
Q 045012 237 LKSIAND-------------------HSK--------------ND-------DDLN-----LLQEKLKKQL-SGKKFLLV 270 (576)
Q Consensus 237 l~~l~~~-------------------~~~--------------~~-------~~~~-----~l~~~l~~~l-~~kr~LlV 270 (576)
+.++... ... .+ .... .....+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 4443111 000 00 0000 1122223333 34699999
Q ss_pred EeCCCCCChhhhhhhccCCCCCC----CCceEEE--Eecch--HHHHhhhcccceecCCCChHHHHHHHHHhhhCCCCCC
Q 045012 271 LDDVWNENYNSWCTLSCPFGAGA----SGSKIVV--THRNQ--DVAATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFN 342 (576)
Q Consensus 271 lDdv~~~~~~~~~~l~~~l~~~~----~gs~ilv--TtR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 342 (576)
+||+++.+......+........ ....|.. |.+.. .+.........+.|.||+..+...+.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99998877666544332222111 0112322 33322 1222223457899999999999999877764322
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHHhhccC------CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHH
Q 045012 343 IRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVK------DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKR 416 (576)
Q Consensus 343 ~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~ 416 (576)
....+....|+++..|+|+.+..+-..+... .+...|..-..+. ........+...+..-.+.||...|.
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHHHHH
Confidence 2234778899999999999999999988764 2333343221111 11111122555688899999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHHHCCCceeeC-----CCcCe--E-EEchHHH
Q 045012 417 CFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVRELHSRSLFQQSS-----KDASR--F-VMHDLIN 488 (576)
Q Consensus 417 ~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~-----~~~~~--~-~mH~lv~ 488 (576)
.+...|++. -.|+.+.|...+-. ...+++...++.|....++-.++ ..... | ..|++|+
T Consensus 313 Vl~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 999999995 45567777665521 35667788788887766664321 11112 2 4699998
Q ss_pred HHHHHHh
Q 045012 489 DLARWAA 495 (576)
Q Consensus 489 ~~a~~~~ 495 (576)
+.|-...
T Consensus 380 qaaY~~i 386 (849)
T COG3899 380 QAAYNLI 386 (849)
T ss_pred HHHhccC
Confidence 8876543
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.22 E-value=2.6e-10 Score=115.85 Aligned_cols=275 Identities=16% Similarity=0.138 Sum_probs=150.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|++..++.+..++..... .....+.+.|+|++|+|||+||+.+++.. ...+ .++. .........+..++..+
T Consensus 28 vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~-~~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITS-GPALEKPGDLAAILTNL 100 (328)
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEe-cccccChHHHHHHHHhc
Confidence 8999999999888764321 13446678899999999999999998843 2211 1111 11112222233333333
Q ss_pred hCCCCCCCCCH----HHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHhhh--cc
Q 045012 241 ANDHSKNDDDL----NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR--AV 314 (576)
Q Consensus 241 ~~~~~~~~~~~----~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--~~ 314 (576)
....-.-.++. ....+.+...+.+.+..+++|+..+.. .+...++ +.+-|..|++...+...+. ..
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHhcC
Confidence 21110000000 112223334444444455555432221 0111111 2345566776543333221 12
Q ss_pred cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhccccCCC
Q 045012 315 SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTNLWDLQE 394 (576)
Q Consensus 315 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~ 394 (576)
..+.+.+++.++..+++.+.+...+. . ...+....|++.|+|.|-.+..+...+. .|...... .....
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGV-E---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GVITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CCCCH
Confidence 46889999999999999988765432 1 2236788999999999965555544321 12111100 00000
Q ss_pred -CcccchhhhhhhhcCCcHHHHHHHH-HhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHH-HHHHCCCc
Q 045012 395 -DKCDIVPALRVSYHFLPPQLKRCFA-YCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVR-ELHSRSLF 471 (576)
Q Consensus 395 -~~~~i~~~l~~sy~~L~~~~k~~~~-~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~-~L~~rsll 471 (576)
.-......+...+..|++..+..+. .+..|+.+ .+..+.+.... .. ..+.+++.++ .|++.+|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHHcCCc
Confidence 0012334456778889998888885 77788776 46665554332 11 2334565677 99999999
Q ss_pred eeeC
Q 045012 472 QQSS 475 (576)
Q Consensus 472 ~~~~ 475 (576)
+...
T Consensus 308 ~~~~ 311 (328)
T PRK00080 308 QRTP 311 (328)
T ss_pred ccCC
Confidence 8544
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.20 E-value=9.8e-10 Score=110.74 Aligned_cols=275 Identities=16% Similarity=0.129 Sum_probs=148.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|++..++.|..++..... ....+..+.++|++|+|||+||+.+++.. ...+ ..+..+. ......+...+..+
T Consensus 7 iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~-~~~~~~l~~~l~~~ 79 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPA-LEKPGDLAAILTNL 79 (305)
T ss_pred cCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccch-hcCchhHHHHHHhc
Confidence 8999999999988864321 12345668899999999999999998742 2221 1111111 11112222233333
Q ss_pred hCCCCCCCCCH----HHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHhhh--cc
Q 045012 241 ANDHSKNDDDL----NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR--AV 314 (576)
Q Consensus 241 ~~~~~~~~~~~----~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--~~ 314 (576)
....-.-.++. ....+.+...+.+.+..+|+++..+.. .+ ...++ +.+-|..||+...+..... ..
T Consensus 80 ~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHhhcc
Confidence 22110000000 112334455555555556666543321 11 11111 2455666777644333221 12
Q ss_pred cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhccccCCC
Q 045012 315 SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTNLWDLQE 394 (576)
Q Consensus 315 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~ 394 (576)
..+.+.+++.++..+++.+.+..... . ...+....|++.|+|.|-.+..++..+ |.............
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINR 219 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCH
Confidence 46789999999999999988754322 1 124667889999999997765555432 11110000000000
Q ss_pred -CcccchhhhhhhhcCCcHHHHHHHH-HhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHH-HHHHCCCc
Q 045012 395 -DKCDIVPALRVSYHFLPPQLKRCFA-YCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVR-ELHSRSLF 471 (576)
Q Consensus 395 -~~~~i~~~l~~sy~~L~~~~k~~~~-~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~-~L~~rsll 471 (576)
.-......+...|..|++..+..+. .++.++.+ .+..+.+.... | .....++..++ .|++++|+
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCc
Confidence 0011222356678889998888776 55777654 45544444322 1 12334677788 69999999
Q ss_pred eeeC
Q 045012 472 QQSS 475 (576)
Q Consensus 472 ~~~~ 475 (576)
....
T Consensus 287 ~~~~ 290 (305)
T TIGR00635 287 QRTP 290 (305)
T ss_pred ccCC
Confidence 7543
No 13
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=3.5e-10 Score=102.95 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=87.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhcc----ccceEEEEeCCCCChh---HHHHHHHHhhhCCCCCCCCCHHHHHHHH
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEDFDVS---RVTQSILKSIANDHSKNDDDLNLLQEKL 258 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~l~~~l 258 (576)
+++.|+|.+|+||||+++.++.+...... +...+|.+........ .+...|..+.... ..........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHHH
Confidence 57899999999999999999875433322 3456666665443322 2333333333221 11111111111
Q ss_pred HHhhcCCeEEEEEeCCCCCChh-------hhhhhccCCCCC--CCCceEEEEecchHHH---HhhhcccceecCCCChHH
Q 045012 259 KKQLSGKKFLLVLDDVWNENYN-------SWCTLSCPFGAG--ASGSKIVVTHRNQDVA---ATMRAVSGKTLKELSDDD 326 (576)
Q Consensus 259 ~~~l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~--~~gs~ilvTtR~~~v~---~~~~~~~~~~l~~L~~~e 326 (576)
....++++||||++++.... .+..+...+... .++++++||+|..... ........+.+.+|++++
T Consensus 77 --~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 77 --LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred --HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 12578999999999764321 122333222222 4689999999987663 333344678999999999
Q ss_pred HHHHHHHhh
Q 045012 327 CLRVLIQHS 335 (576)
Q Consensus 327 a~~L~~~~~ 335 (576)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999887653
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=9.6e-08 Score=103.50 Aligned_cols=301 Identities=15% Similarity=0.120 Sum_probs=162.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch---hcccc--ceEEEEeCCCCChhHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV---QRHFE--IKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~~~~ 234 (576)
..||++|+++|...|...-. +.....++.|+|++|+|||++++.|...... ....+ ..++|+...-.+...++.
T Consensus 757 LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 47999999999999865432 1233467889999999999999999874321 11122 245666666667888999
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhh-c--CCeEEEEEeCCCCCChhhhhhhccCCC-CCCCCceEEE--EecchHHH
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQL-S--GKKFLLVLDDVWNENYNSWCTLSCPFG-AGASGSKIVV--THRNQDVA 308 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TtR~~~v~ 308 (576)
.|..++....+............+...+ . +...+||||+++......-+.+...+. ....+++|+| +|......
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcc
Confidence 9999885544322333333444444443 2 234689999997532111111221111 1123455444 33321111
Q ss_pred ----Hhhh---cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCC----C
Q 045012 309 ----ATMR---AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKD----D 377 (576)
Q Consensus 309 ----~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~----~ 377 (576)
..+. ....+...|.+.++-.+++..++......-.+..++-+++.++...|-.=.||.++-.+..... +
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT 995 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIV 995 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccC
Confidence 1111 1234677999999999999988764322122233334444444444445566665554443211 1
Q ss_pred hhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCCC---CCcccHHHHHHHH--HHc--C-CCccCC
Q 045012 378 LNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPK---DYEFQEEEIILLW--AAE--G-FLHQEN 449 (576)
Q Consensus 378 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~---~~~i~~~~Li~~w--~ae--g-~i~~~~ 449 (576)
.+.-..+.+.. ....+.-....||.+.|..+..+...-. ...++...+.... +++ | .+..
T Consensus 996 ~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv-- 1063 (1164)
T PTZ00112 996 PRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM-- 1063 (1164)
T ss_pred HHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC--
Confidence 11111111110 1112344556899998877765443211 2235554444333 333 1 1111
Q ss_pred CCCCHHHHHHHHHHHHHHCCCceeeC
Q 045012 450 SGRKMEDLGRKFVRELHSRSLFQQSS 475 (576)
Q Consensus 450 ~~~~~e~~~~~~l~~L~~rsll~~~~ 475 (576)
....+ ...+++.+|...|+|-...
T Consensus 1064 -~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1064 -CSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred -CCcHH-HHHHHHHHHHhcCeEEecC
Confidence 11223 6788899999999987655
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.4e-08 Score=98.77 Aligned_cols=168 Identities=26% Similarity=0.260 Sum_probs=102.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-...+.++++ .+.+.-..+||++|+||||||+.+.. .....| ..++...+-.
T Consensus 33 lg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gv---------- 86 (436)
T COG2256 33 LGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGV---------- 86 (436)
T ss_pred hCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccH----------
Confidence 455555555554 45677888999999999999999987 333333 2233222211
Q ss_pred hCCCCCCCCCHHHHHHHH-HHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE--EecchHHH---Hhhhcc
Q 045012 241 ANDHSKNDDDLNLLQEKL-KKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVA---ATMRAV 314 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~ 314 (576)
.++....+.- +....+++.+|++|.|+.-+..+-+.++. .-..|.-|+| ||.++... ...+..
T Consensus 87 --------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp---~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 87 --------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLP---HVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred --------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhh---hhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 1222222222 22334889999999998865444444433 3346777777 77776332 223356
Q ss_pred cceecCCCChHHHHHHHHHhhhCCCCC-C--CCchHHHHHHHHHHhcCCChHHH
Q 045012 315 SGKTLKELSDDDCLRVLIQHSLGAGVF-N--IRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 315 ~~~~l~~L~~~ea~~L~~~~~~~~~~~-~--~~~~~~~~~~~I~~~c~G~PLai 365 (576)
.++.+++|+.++-..++.+.+...... . .....++....|+..++|---+.
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 899999999999999998843322211 0 11122456778899999865443
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=2.9e-08 Score=95.23 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=96.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
+.+.|+|++|+|||+|++.+++. .........|+++... ..... .+.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~----------------------~~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP----------------------AVLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH----------------------HHHhhcc-c
Confidence 57899999999999999999984 3333344566655311 00000 1111121 3
Q ss_pred eEEEEEeCCCCCC-hhhhhh-hccCCCCC-CCCceEE-EEecc---------hHHHHhhhcccceecCCCChHHHHHHHH
Q 045012 266 KFLLVLDDVWNEN-YNSWCT-LSCPFGAG-ASGSKIV-VTHRN---------QDVAATMRAVSGKTLKELSDDDCLRVLI 332 (576)
Q Consensus 266 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~il-vTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~ 332 (576)
.-+|+|||+|... ...|.. +...+... ..|..+| +|+.. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998742 234543 22222221 2355554 45544 3444545556788999999999999999
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 333 QHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
+.+...+. .. -+++..-|++.+.|..-.+..+-..|
T Consensus 172 ~~a~~~~l-~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-EL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88875432 22 24778889999998877776655444
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.76 E-value=2e-07 Score=97.65 Aligned_cols=176 Identities=20% Similarity=0.222 Sum_probs=103.8
Q ss_pred cccchhHHH---HHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEE---IVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|++..+.. +..++.. .....+.|+|++|+||||||+.+++. .... |+.++.......-++.+
T Consensus 15 vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~i- 80 (413)
T PRK13342 15 VGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREV- 80 (413)
T ss_pred cCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHH-
Confidence 677766544 6666643 34567889999999999999999873 2222 22222211111111222
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE--EecchHHH---Hhh
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVA---ATM 311 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~ 311 (576)
.+..... ..+++.+|++|+++..+....+.+...+.. |..+++ ||.+.... ...
T Consensus 81 -----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 81 -----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHh
Confidence 2222111 245788999999988765555555554432 444444 34443211 112
Q ss_pred hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHh
Q 045012 312 RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGL 371 (576)
Q Consensus 312 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 371 (576)
.....+.+.+++.++...++.+.+..... .......+....|++.|+|.|..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23467899999999999999876532111 000122466788999999999877555443
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=1.7e-08 Score=87.90 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=80.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchh---ccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQ---RHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKK 260 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~ 260 (576)
+.+++.|+|++|+|||++++.+.+..... ..-...+|+.+....+...+...|+..++.... ...+...+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 34789999999999999999998843211 013456699888777999999999999998765 34566777777777
Q ss_pred hhcCCe-EEEEEeCCCCC-ChhhhhhhccCCCCCCCCceEEEEecc
Q 045012 261 QLSGKK-FLLVLDDVWNE-NYNSWCTLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 261 ~l~~kr-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 304 (576)
.+...+ .+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 776554 59999999775 5444555543333 566777777654
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=6.2e-07 Score=96.87 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=116.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS- 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 239 (576)
+|.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+.+.......+. +..+..-...+.|...
T Consensus 19 IGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 19 VGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred cCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 89999999999988643 2346778999999999999998876322111110 0011111111222110
Q ss_pred ----hhCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHh
Q 045012 240 ----IANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAAT 310 (576)
Q Consensus 240 ----l~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 310 (576)
+..... .....+++.+.+... ..++.-++|||+++..+...++.++..+.......++|+||.+.. +...
T Consensus 87 h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 87 FVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000000 111223332222221 134556899999998887788888777765555777777776643 2222
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP-LAAKTLGGLL 372 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~~L 372 (576)
.+....+.+.+++.++..+.+.+.+...+. . ...+....|++.++|.. -++.++-..+
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~---id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERI-A---FEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234478999999999999999887644332 1 12466788999999865 4666544433
No 20
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=5.2e-07 Score=91.09 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=114.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc----chhccccceEEEEe-CCCCChhHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD----RVQRHFEIKAWTCV-SEDFDVSRVTQS 235 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~~~~ 235 (576)
+|-+.-++.+...+..+ .-.+...++|+.|+||||+|+.++... ....|.+...|... +....+.+ .++
T Consensus 7 ~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~ 80 (313)
T PRK05564 7 IGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRN 80 (313)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHH
Confidence 68778888888888543 345788999999999999999988632 12234454444432 12122222 222
Q ss_pred HHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHH-Hh-hhc
Q 045012 236 ILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-AT-MRA 313 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~-~~~ 313 (576)
+.+.+...+ ..+++-++|+|+++..+...++.++..+.....++.+|++|.+.... .. ...
T Consensus 81 ~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 333222111 12456688888888877788989988888777788888888765322 22 223
Q ss_pred ccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 314 VSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 314 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
...+.+.++++++....+.+...+ . ..+.+..++..++|.|.-+...
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~-----~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYND-----I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999998877654321 1 1244677899999998765433
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.8e-07 Score=89.85 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=98.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCC
Q 045012 164 EKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAND 243 (576)
Q Consensus 164 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 243 (576)
+..++.+.+++.. .....+.|+|++|+|||+||+.+++.. .......++++++.-. ...
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~------~~~------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELA------QAD------- 81 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHH------HhH-------
Confidence 3345555555431 345788999999999999999998742 2223334455433211 100
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChh-hh-hhhccCCCC-CCCCceEEEEecchH---------HHHhh
Q 045012 244 HSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN-SW-CTLSCPFGA-GASGSKIVVTHRNQD---------VAATM 311 (576)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~ 311 (576)
.. +...+.+ .-+||+||++..... .| ..+...+.. ...+..+|+||+... +...+
T Consensus 82 --------~~----~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PE----VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HH----HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 00 1111222 248999999764322 22 223332221 123457888887532 11122
Q ss_pred hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 312 RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 312 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
.....+.+.+++.++...++...+...+. . --.+..+.|++.+.|+|..+.-+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL-Q---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22357899999999999998775533221 1 123667888889999999887775443
No 22
>PRK04195 replication factor C large subunit; Provisional
Probab=98.69 E-value=1.1e-06 Score=94.10 Aligned_cols=244 Identities=20% Similarity=0.169 Sum_probs=137.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+..++.+.+|+..... +...+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+ ...+..++...
T Consensus 17 vg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~-~~~i~~~i~~~ 88 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRT-ADVIERVAGEA 88 (482)
T ss_pred cCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEccccccc-HHHHHHHHHHh
Confidence 7999999999999875431 23368899999999999999999998431 22 22233333221 22333333322
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh----hhhhhhccCCCCCCCCceEEEEecch-HHHH-hh-hc
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY----NSWCTLSCPFGAGASGSKIVVTHRNQ-DVAA-TM-RA 313 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~-~~ 313 (576)
..... ....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+ ..
T Consensus 89 ~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 89 ATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred hccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhcc
Confidence 21110 0113678999999976432 234444444432 234466666432 1111 11 23
Q ss_pred ccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCC---ChhhHHHHHhhccc
Q 045012 314 VSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKD---DLNDWEFVLNTNLW 390 (576)
Q Consensus 314 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~---~~~~w~~~l~~~~~ 390 (576)
...+.+.+++.++....+...+...+. ..+ .+....|++.++|..-.+......+.... +.+....+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~---- 223 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR---- 223 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc----
Confidence 467889999999999888877654332 121 36788899999997776655444443321 1222222211
Q ss_pred cCCCCcccchhhhhhhhc-CCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCcc
Q 045012 391 DLQEDKCDIVPALRVSYH-FLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQ 447 (576)
Q Consensus 391 ~~~~~~~~i~~~l~~sy~-~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~ 447 (576)
.+...+++.++..-+. .-+......+..+. ++. ..+..|+.+.+...
T Consensus 224 --~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 --RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred --CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1223456666665554 33333433332222 222 34778999998754
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=8.1e-07 Score=91.38 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=110.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.-++.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.......+. ..+...-....++....
T Consensus 19 iGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 19 IGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGL 86 (363)
T ss_pred cChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCC
Confidence 78888888888888643 2346788999999999999999987321111000 00011111111111111
Q ss_pred hCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhh
Q 045012 241 AND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATM 311 (576)
Q Consensus 241 ~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~ 311 (576)
... ........++..+.+... ..+++-++|+|+++..+...++.++..+........+|++|.+. .+...+
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 000011222222221111 12455699999998877666777777766555566677666543 333222
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
+....+++.+++.++..+.+...+...+. .-.++.+..|++.++|.|-.+...
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23468899999999999888876544321 112356778999999988644333
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=5.2e-07 Score=92.34 Aligned_cols=198 Identities=16% Similarity=0.120 Sum_probs=107.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCCh-hHHHH---H
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDV-SRVTQ---S 235 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~---~ 235 (576)
+|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+... ...+. ..+.+++++..+. ...+. .
T Consensus 18 ~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 18 LGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred cCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcc
Confidence 7888989998888853 2344688999999999999999887321 11111 1233333221100 00000 0
Q ss_pred HHHhhhCCCCCCCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHH
Q 045012 236 ILKSIANDHSKNDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAA 309 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~ 309 (576)
....++..........+.....++... .+.+-+||+||++.........+...+......+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000000000111222222222211 13455899999977654444445444433334567777775432 222
Q ss_pred hh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 310 TM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 310 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.+ .....+.+.+++.++...++...+...+. . -..+....|++.++|.+-.+....
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12 23357888999999999888876644332 1 124677889999999876654433
No 25
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=6.5e-08 Score=96.43 Aligned_cols=291 Identities=16% Similarity=0.165 Sum_probs=182.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC-hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD-VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
..+.+.++|.|||||||++-.+.. +...|....|...-.+.+ ...+.-.....++....+ -+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~----g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP----GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc----chHHHHHHHHHH
Confidence 458999999999999999977775 566787666665555554 444444444556655431 122334556666
Q ss_pred cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHhhhcccceecCCCChH-HHHHHHHHhhhCCCC-
Q 045012 263 SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKELSDD-DCLRVLIQHSLGAGV- 340 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~~- 340 (576)
.++|.++|+||..... ..-..+...+..+.+.-.|+.|+|+.... .......+.+|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7899999999984421 22233444555555667788899875332 23456677777765 688888766543221
Q ss_pred CCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhccccCC-------CCcccchhhhhhhhcCCcHH
Q 045012 341 FNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTNLWDLQ-------EDKCDIVPALRVSYHFLPPQ 413 (576)
Q Consensus 341 ~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~ 413 (576)
............+|.++.+|.|++|..+++..+.-. +.+-..-+......+. ..+....+.+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 112223357788999999999999999999887652 2222222221111111 12245778999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHHHCCCceeeC-CCcCeEEEchHHHHHHH
Q 045012 414 LKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVRELHSRSLFQQSS-KDASRFVMHDLINDLAR 492 (576)
Q Consensus 414 ~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~-~~~~~~~mH~lv~~~a~ 492 (576)
.+-.|..++.|...|.-. ...|.+-|-... .+.-..-..+..|++.+++.... .+...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998887554 334444432210 01223444577888888886543 13335665566666665
Q ss_pred HHh
Q 045012 493 WAA 495 (576)
Q Consensus 493 ~~~ 495 (576)
.+.
T Consensus 312 aeL 314 (414)
T COG3903 312 AEL 314 (414)
T ss_pred HHH
Confidence 544
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.4e-07 Score=100.26 Aligned_cols=196 Identities=19% Similarity=0.188 Sum_probs=112.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-.+.|..++... .-...+.++|++|+||||+|+.+++.......+...+|.|.+... +.......+..+
T Consensus 17 vGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el 90 (504)
T PRK14963 17 VGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEI 90 (504)
T ss_pred cChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEe
Confidence 78887788888877543 234567999999999999999998743222222222333221100 000000000011
Q ss_pred hCCCCCCCCCHHHHHHHHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh-hcccce
Q 045012 241 ANDHSKNDDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM-RAVSGK 317 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~ 317 (576)
............++.+.+.. -..+++-++|+|+++..+...+..++..+......+.+|++|.. ..+...+ .....+
T Consensus 91 ~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~ 170 (504)
T PRK14963 91 DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170 (504)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEE
Confidence 11111011122222222221 12345679999999887767777887777654455555555543 3332222 234689
Q ss_pred ecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 318 TLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 318 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
++.+++.++....+.+.+...+.. ...+....|++.++|.+--+.
T Consensus 171 ~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 999999999999998876544321 124677889999999886553
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.2e-06 Score=93.39 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=114.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
||-+.-++.|.+++..+ .-.+.+.++|+.|+||||+|+.+.+...-...-...- + .+.....-...+.|...-
T Consensus 19 IGQe~vv~~L~~al~~g-----RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 19 VGQEHVVRALTHALEQQ-----RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEIDAGR 91 (700)
T ss_pred cCcHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHHcCC
Confidence 89899899999988643 2346778999999999999999876322100000000 0 000111111122221100
Q ss_pred -----hCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHh
Q 045012 241 -----ANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAAT 310 (576)
Q Consensus 241 -----~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 310 (576)
..... .....+++.+.+... ..++.-++|+|+++..+...++.++..+..-..++.+|+ ||....+...
T Consensus 92 hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 92 FVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 00000 112233333322221 245667999999999887888888887765445555555 5544444433
Q ss_pred h-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 311 M-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 311 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
+ +....+.+..++.++..+.+.+.+...+. . ...+....|++.++|.|.-...+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 34578999999999999988876543322 1 11355678999999998654443
No 28
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.58 E-value=1.4e-07 Score=87.36 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=33.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV 211 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 211 (576)
+||+++++++...|... .....+.+.|+|++|+|||+|.+.++.....
T Consensus 3 vgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 3 VGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999622 2456799999999999999999999885433
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.58 E-value=3.8e-07 Score=80.64 Aligned_cols=124 Identities=18% Similarity=0.101 Sum_probs=70.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|++..+..+...+.. ...+.+.|+|++|+|||+|++.+++... ..-...+++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4788888889888853 2346899999999999999999998432 222344555544332221111100000
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC---hhhhhhhccCCCCC---CCCceEEEEecch
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN---YNSWCTLSCPFGAG---ASGSKIVVTHRNQ 305 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~---~~gs~ilvTtR~~ 305 (576)
............++.+|++||++... ...+......+... ..+..+|+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 00111122234567899999998532 22233333333221 3577888888765
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.4e-06 Score=96.07 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=112.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS- 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 239 (576)
+|-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.......... .+...-.....+...
T Consensus 19 IGQe~Iv~~LknaI~~~-----rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~-------~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 19 VGQSHVLHALTNALTQQ-----RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA-------TPCGVCSSCVEIAQGR 86 (944)
T ss_pred cCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC-------CCCCCchHHHHHhcCC
Confidence 79888888888888643 23456689999999999999999874221111000 000000111111110
Q ss_pred ------hhCCCCCCCCCHHHHHHHHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh-
Q 045012 240 ------IANDHSKNDDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT- 310 (576)
Q Consensus 240 ------l~~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~- 310 (576)
+.........+...+.+.+.. -..+++-++|||+++..+....+.++..+-......++|++|.+ ..+...
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTV 166 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHH
Confidence 000000011222223222221 12466779999999988877888887777654455666655544 444322
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
......|++.+++.++....+.+.+-..+. ....+....|++.++|.|--+..+
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 234578999999999999988876543221 112366788999999988644433
No 31
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.55 E-value=1.2e-06 Score=85.25 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=100.0
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
.+..+.+.+||++|+||||||+.+.+..+... ..+|..|....-..-++.|+++-.. ...
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~ 218 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKS 218 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHh
Confidence 35677888999999999999999997433222 4566666544433444444443221 123
Q ss_pred hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE--EecchHHH---HhhhcccceecCCCChHHHHHHHHHhhh
Q 045012 262 LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVA---ATMRAVSGKTLKELSDDDCLRVLIQHSL 336 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 336 (576)
+.++|.+|++|.|+.-+..+-+. .||.-..|.-++| ||.++... ..+....++.|++|+.++...++.+...
T Consensus 219 l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 46789999999997754333222 2444456777776 77776432 2234567899999999999998877332
Q ss_pred --CC-CC---CCCC---chHHHHHHHHHHhcCCChH
Q 045012 337 --GA-GV---FNIR---QSLKEVAEKIAKKCKGLPL 363 (576)
Q Consensus 337 --~~-~~---~~~~---~~~~~~~~~I~~~c~G~PL 363 (576)
+. .. .-++ .....+..-++..|+|-.-
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 11 1111 1234677778888888653
No 32
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.4e-07 Score=81.80 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=77.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
.+++.|.|+.|+|||||+++++.+.. .....++++..+...... ...+ +.+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL-----------------ADPD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH-----------------hhhh-hHHHHHHhhcc
Confidence 36899999999999999999987432 224456665543322100 0000 22333333444
Q ss_pred CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHhh------hcccceecCCCChHHH
Q 045012 265 KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM------RAVSGKTLKELSDDDC 327 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~ea 327 (576)
++.+|+||+++.. ..|......+....+..+|++|+.+......- +....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999775 46777776666655678999999987655321 1235678899988763
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2e-06 Score=92.02 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+...+.|..++..+ .-.+.+.++|+.|+||||+|+.+.+...... ++.. .+.+.-...+.+...-
T Consensus 18 IGQe~vv~~L~~aI~~g-----rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 18 VGQNHVSRALSSALERG-----RLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGR 85 (702)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCC
Confidence 89999999999998643 2357889999999999999998876321111 1100 0111111111111100
Q ss_pred hCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHH-Hh
Q 045012 241 AND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVA-AT 310 (576)
Q Consensus 241 ~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~-~~ 310 (576)
... ........+++.+.+... ..++.-++|+|+++..+......++..+.....+..+|++|.+. .+. ..
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 000 000112233332222211 23566789999999877677777777666544566777766553 222 22
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
......+++.+++.++....+.+.+...+. ....+....|++.++|.+-.+..
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 234578999999999999988877654332 11236678899999997754443
No 34
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.8e-05 Score=76.15 Aligned_cols=204 Identities=16% Similarity=0.146 Sum_probs=124.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc--ceEEEEeCCCCChhHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il 237 (576)
..+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.+... +..... ..++|++-...+...++..|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 37999999999988865432 334445999999999999999999984 333322 268899888899999999999
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCChhhhhhhccCCCCCC-CCceE--EEEecchHHHHhhh
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWCTLSCPFGAGA-SGSKI--VVTHRNQDVAATMR 312 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--lvTtR~~~v~~~~~ 312 (576)
.+++..+. ......+..+.+.+.+. ++.+++|||+++......-+.+...+.... .+++| |..+-+......+.
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99984443 44555566666666664 578999999996632111122222222111 13443 33444433332221
Q ss_pred -------cccceecCCCChHHHHHHHHHhhhCC-CCCCCCchHHHHHHHHHHhcCC-ChHHHHHH
Q 045012 313 -------AVSGKTLKELSDDDCLRVLIQHSLGA-GVFNIRQSLKEVAEKIAKKCKG-LPLAAKTL 368 (576)
Q Consensus 313 -------~~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~ 368 (576)
....+...|=+.+|-...+..++-.. ......+..-+.+..++..-+| .=.||.++
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 12346788888889888888776432 1112223333444444444444 34444443
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.53 E-value=2.1e-06 Score=86.89 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccc-eEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+|.+..++.|..++.. +..+-+.++|++|+||||+|..+++... ...|.. .+=++.++..+. +.+++++..
T Consensus 16 ~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~~i~~ 87 (319)
T PLN03025 16 VGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRNKIKM 87 (319)
T ss_pred cCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHHHHHH
Confidence 6777777777777643 2334577999999999999999987321 112221 111111211111 122222222
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhh-hcccce
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATM-RAVSGK 317 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~ 317 (576)
+..... ..-.++.-+++||+++..+......+...+......+++++++... .+...+ .....+
T Consensus 88 ~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 88 FAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 111000 0002356799999998876555555554443333456677766442 222211 233678
Q ss_pred ecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 318 TLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 318 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
++.+++.++....+...+-..+. ..+ .+....|++.++|..-.+..
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQALN 199 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 99999999999988877654332 111 35678899999997654443
No 36
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=3.8e-06 Score=89.03 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccc-eEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+|-+.-+..|...+... .-.+.+.++|++|+||||+|+.+++.......... .-+.. ...-.....+...
T Consensus 24 iGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~i~~~ 94 (507)
T PRK06645 24 QGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCISFNNH 94 (507)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHHHhcC
Confidence 78888788887776532 33468899999999999999999874221111000 00000 0000111111111
Q ss_pred hhCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHh
Q 045012 240 IAND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAAT 310 (576)
Q Consensus 240 l~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 310 (576)
.... ........+++.+.+... +.+++-++|+|+++..+...+..+...+....+.+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 000112233333322221 235677899999998777788888877765555566554 5555555443
Q ss_pred hh-cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 311 MR-AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 311 ~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
+. ....+++.+++.++....+...+...+.. ...+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 32 44678999999999999998887544321 12356677999999977544
No 37
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.51 E-value=3.2e-05 Score=84.78 Aligned_cols=202 Identities=20% Similarity=0.214 Sum_probs=121.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc---cceEEEEeCCC---CChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSED---FDVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~ 233 (576)
.+|++..+..+.+.+.. .....+.|+|++|+||||||+.+++.......+ ....|+.+... .+...+.
T Consensus 156 iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 156 IVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT 229 (615)
T ss_pred ceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh
Confidence 37999999988877742 334679999999999999999998754322222 12345555321 1222221
Q ss_pred HHH---------------HHhhhCCCC---------------CCCCC-HHHHHHHHHHhhcCCeEEEEEeCCCCCChhhh
Q 045012 234 QSI---------------LKSIANDHS---------------KNDDD-LNLLQEKLKKQLSGKKFLLVLDDVWNENYNSW 282 (576)
Q Consensus 234 ~~i---------------l~~l~~~~~---------------~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~ 282 (576)
..+ +...+.... ++... ....+..|...+.++++.++-|+.|..+...|
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence 111 111111000 00111 12356778888888899988888877766678
Q ss_pred hhhccCCCCCCCCceEEE--EecchHH-HHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhc
Q 045012 283 CTLSCPFGAGASGSKIVV--THRNQDV-AATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKC 358 (576)
Q Consensus 283 ~~l~~~l~~~~~gs~ilv--TtR~~~v-~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c 358 (576)
..+...+..+.+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+...+. ... .+....|.+.+
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ys 385 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIARYT 385 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHCC
Confidence 777766665555555555 5664321 1111 22356788999999999999987643221 111 35556666666
Q ss_pred CCChHHHHHHHHh
Q 045012 359 KGLPLAAKTLGGL 371 (576)
Q Consensus 359 ~G~PLai~~~~~~ 371 (576)
..-+-++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 6557777766544
No 38
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=4.2e-06 Score=84.89 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=104.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEe--CCCCChhHHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV--SEDFDVSRVTQSILK 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~ 238 (576)
+|++..++.+..++.. +..+.+.|+|++|+||||+|+.+.+... ...+. ..++.+ +..... ....+.+.
T Consensus 20 ~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~-~~~~~~i~ 90 (319)
T PRK00440 20 VGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI-DVIRNKIK 90 (319)
T ss_pred cCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch-HHHHHHHH
Confidence 7888888888888853 2334579999999999999999987421 11121 112222 111111 11111111
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-hhcccc
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-MRAVSG 316 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~ 316 (576)
.+....+ .....+-++++|+++.........+...+......+.+|+++... .+... ......
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1111000 001345689999997655444445555444434456677766432 11111 123356
Q ss_pred eecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 317 KTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 317 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
+++.+++.++....+...+...+. .. ..+....+++.++|.+--+....
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999998888877654332 11 24667889999999877644433
No 39
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=2.8e-06 Score=78.89 Aligned_cols=180 Identities=21% Similarity=0.218 Sum_probs=93.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-+..+.-++..... ..+.+.-+.+||++|+||||||..+.+. ....|. +.+.. ...
T Consensus 27 iGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~------------ 87 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIE------------ 87 (233)
T ss_dssp -S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C--------------
T ss_pred cCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhh------------
Confidence 7888777776555543211 2356778899999999999999999983 333332 22211 111
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCC--------CC-----------CCceEEEE
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGA--------GA-----------SGSKIVVT 301 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~-----------~gs~ilvT 301 (576)
...++...+.. + +++-+|++|.++..+...-+.+..++.+ .+ +-+-|=.|
T Consensus 88 ---------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 88 ---------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp ---------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred ---------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 11222222222 1 2345777788876543222222221111 11 12334458
Q ss_pred ecchHHHHhhhc-c-cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhcc
Q 045012 302 HRNQDVAATMRA-V-SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSV 374 (576)
Q Consensus 302 tR~~~v~~~~~~-~-~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~ 374 (576)
||...+...+.. . -..+++.-+.+|-..+..+.+...+. +-.++.+.+|+++|.|-|--..-+-..++.
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 887655444332 2 23479999999999999877654332 344688999999999999876666555543
No 40
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=4.1e-06 Score=85.55 Aligned_cols=195 Identities=14% Similarity=0.063 Sum_probs=112.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEE---EEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAW---TCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~~il 237 (576)
+|.+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+.+..--......... .........-...+.+.
T Consensus 22 iGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 22 FGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred cChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 79888888898888643 33567899999999999999887763211110000000 00000000011222221
Q ss_pred HhhhCC-------CCC------CCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEE
Q 045012 238 KSIAND-------HSK------NDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIV 299 (576)
Q Consensus 238 ~~l~~~-------~~~------~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 299 (576)
..-.+. ... ..-..+++. .+.+.+ .+++-++|+|+++..+......++..+.....++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 111000 000 011233322 222222 2567799999999988888888877776544566677
Q ss_pred EEecchH-HHHh-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 300 VTHRNQD-VAAT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 300 vTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
++|.+.. +... ......+.+.+++.++..+++....... + .+....++..++|.|+....+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 7666543 3222 2245789999999999999998753211 1 1222678999999998665543
No 41
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.49 E-value=4.1e-06 Score=77.91 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCC
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVF 341 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 341 (576)
+.+-++|+||++..+....+.++..+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 566789999998876666777777776555566677766643 222222 23468999999999999888776 1 1
Q ss_pred CCCchHHHHHHHHHHhcCCChHH
Q 045012 342 NIRQSLKEVAEKIAKKCKGLPLA 364 (576)
Q Consensus 342 ~~~~~~~~~~~~I~~~c~G~PLa 364 (576)
. .+.+..|++.++|.|..
T Consensus 170 ~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred C-----HHHHHHHHHHcCCCccc
Confidence 1 36688999999998853
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.9e-06 Score=89.57 Aligned_cols=182 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc-------------------cccceEEE
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-------------------HFEIKAWT 221 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 221 (576)
+|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++...-.. .|...+++
T Consensus 19 iGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 19 AGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 78888888888888542 2346688999999999999999986321100 11111222
Q ss_pred EeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE
Q 045012 222 CVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV 300 (576)
Q Consensus 222 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 300 (576)
...... ..++...+.+.+... ..+++-++|+|+++..+...++.++..+......+.+|+
T Consensus 94 daas~~-------------------gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 94 DAASRT-------------------GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred eccccc-------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 111111 111222232222211 235667999999988777777778777765545565554
Q ss_pred -EecchHHHHh-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHHH
Q 045012 301 -THRNQDVAAT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLGG 370 (576)
Q Consensus 301 -TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 370 (576)
||....+... ......+++.+++.++....+.+.+...+. ....+....|++.++|.+- |+..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5544434322 234578999999999988888775543221 1123566789999999664 5555443
No 43
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=2.5e-07 Score=89.09 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC--CChhHHHHHHHHhhhCCCCCCCCC-----HHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED--FDVSRVTQSILKSIANDHSKNDDD-----LNLLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~-----~~~l~ 255 (576)
.....+.|+|++|+|||||++.++++.... +|+..+|+.+.++ .++.++++.+...+.......+.. .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 345788999999999999999999975444 8999999997766 789999999844433322211111 11122
Q ss_pred HHHHHh-hcCCeEEEEEeCCCC
Q 045012 256 EKLKKQ-LSGKKFLLVLDDVWN 276 (576)
Q Consensus 256 ~~l~~~-l~~kr~LlVlDdv~~ 276 (576)
+..... -.+++.+|++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247999999999954
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.46 E-value=7.7e-06 Score=84.34 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=108.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh--c------------------cccceEE
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ--R------------------HFEIKAW 220 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~f~~~~w 220 (576)
+|.+..++.+.+++..+ .-.+.+.++|++|+||||+|+.+.....-. . +++ ..+
T Consensus 17 ig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 79999999999988643 234678899999999999998887632111 0 111 111
Q ss_pred EEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEE
Q 045012 221 TCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIV 299 (576)
Q Consensus 221 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 299 (576)
+....... ..+...+.+.+... ..+++-++|+|+++..+......+...+......+.+|
T Consensus 91 ~~~~~~~~-------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 91 IDAASNNG-------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred eeccccCC-------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 11110000 01112222222111 12455688999997765555666666665444566666
Q ss_pred EEecchH-HHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 300 VTHRNQD-VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 300 vTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
++|.+.. +...+ .....+++.++++++..+.+...+-..+. .. ..+.+..|++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 6665443 22222 23467888999999998888876644332 11 13677889999999987665544
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=6.7e-07 Score=92.90 Aligned_cols=190 Identities=18% Similarity=0.113 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-+..|..++... .-...+.++|++|+||||+|+.+++...-. .... ........+ ...+....
T Consensus 21 VGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 21 IHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLEITKGI 88 (484)
T ss_pred hChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHHHHccC
Confidence 78888888888888643 223568999999999999999998732111 1000 000111111 12222211
Q ss_pred hCC-------CCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHhh
Q 045012 241 AND-------HSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAATM 311 (576)
Q Consensus 241 ~~~-------~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~ 311 (576)
... .....++..++.+.+... ..++.-++|+|+++..+...++.++..+........+|+ ||....+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 110 000112223333333221 245667999999998887888888777754434555444 44444443322
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
.....|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+--..
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHH
Confidence 34467999999999999888877644332 1124667889999999985443
No 46
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=6.3e-06 Score=84.95 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=106.1
Q ss_pred cccchhHHHHHHHHhcCCC----CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL----RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
+|-+.-++.|...+..+.. .+..-++.+.++|++|+|||++|..+.+...-... . ..+.+.=...+.+
T Consensus 8 iGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~------~~~Cg~C~~C~~~ 79 (394)
T PRK07940 8 VGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D------EPGCGECRACRTV 79 (394)
T ss_pred cChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C------CCCCCCCHHHHHH
Confidence 6777777778887765320 00113567889999999999999988753111000 0 0000111111111
Q ss_pred HHhhhCC-----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hH
Q 045012 237 LKSIAND-----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QD 306 (576)
Q Consensus 237 l~~l~~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 306 (576)
...-.+. ........+++.+.+... ..+++-++++|+++..+....+.++..+....+++.+|++|.+ ..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHH
Confidence 1100000 000111222222211111 1245568889999888766666677666554556666665555 34
Q ss_pred HHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 307 VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 307 v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
+...+ +....+.+.+++.++..+.+..... .. .+.+..++..++|.|.....+
T Consensus 160 llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 44332 3457899999999999988864321 11 255778999999999765444
No 47
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=6.7e-06 Score=83.59 Aligned_cols=194 Identities=18% Similarity=0.190 Sum_probs=114.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc--cccceEEEEeCCCCChhHHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR--HFEIKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~il~ 238 (576)
+|-+...+.+...+.++ .-...+.|+|+.|+||||+|..+.+..--.. .+... ....+.......+.+..
T Consensus 26 ~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 26 FGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 78889899999988643 3456799999999999999998876321100 01110 01111112223333332
Q ss_pred h-------hhCCCCC------CCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE
Q 045012 239 S-------IANDHSK------NDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV 300 (576)
Q Consensus 239 ~-------l~~~~~~------~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 300 (576)
. +..+... ..-..+++. .+.+.+ .+++-++|+|+++..+....+.++..+.....+..+|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2 1111000 111233333 233333 35667999999999887777777766654434455444
Q ss_pred -EecchHHHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 301 -THRNQDVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 301 -TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
|++...+...+ +....+++.+++.++..+++........ ...+....|++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44443333222 2346899999999999999987432111 113456789999999998765543
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.8e-06 Score=91.04 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=112.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+.+...-...+ ...+...-...+.|...-
T Consensus 19 vGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 19 VGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGR 86 (647)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCC
Confidence 79888888888888643 233557899999999999999998732211100 001111112222322110
Q ss_pred -------hCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHh-
Q 045012 241 -------ANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAAT- 310 (576)
Q Consensus 241 -------~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~- 310 (576)
........++..++.+.+... ..+++-++|+|+++..+....+.++..+-......++|+ ||....+...
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 000000111222222222211 245677999999998887788888777765445555555 4444444322
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
......+.+.+++.++....+.+.+-..+. ....+....|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 234578999999999999988876533221 112356678999999987644443
No 49
>PRK08727 hypothetical protein; Validated
Probab=98.42 E-value=4.8e-06 Score=80.09 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=89.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
..+.|+|++|+|||.|++.+++. .........+++..+ ....+. ...+.+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~---------------~~~~~l-----~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR---------------DALEAL-----EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH---------------HHHHHH-----hc
Confidence 45999999999999999999874 333333455665322 111100 111111 13
Q ss_pred eEEEEEeCCCCCC-hhhhhh-hccCCCC-CCCCceEEEEecchH---------HHHhhhcccceecCCCChHHHHHHHHH
Q 045012 266 KFLLVLDDVWNEN-YNSWCT-LSCPFGA-GASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRVLIQ 333 (576)
Q Consensus 266 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L~~~ 333 (576)
.-+||+||++... ...|.. +...+.. ...|..||+|++... +...+.....+++.+++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996532 122332 2222211 124567999998531 222222356889999999999999998
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 334 HSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
++...+. . -.++...-|++.++|..-.+..+
T Consensus 174 ~a~~~~l-~---l~~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 174 RAQRRGL-A---LDEAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhCCCCHHHHHHH
Confidence 7654322 1 22467788899998776665333
No 50
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7.6e-06 Score=88.54 Aligned_cols=195 Identities=17% Similarity=0.195 Sum_probs=112.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc--cceEEEEeCCCCChhHHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~ 238 (576)
+|-+.-++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.... ...- ..+++.-...+.|..
T Consensus 19 iGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 19 VGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDS 89 (618)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHc
Confidence 78888888888888643 334677999999999999999986532110000 0000 011111122222211
Q ss_pred hhhCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHH
Q 045012 239 SIAND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAA 309 (576)
Q Consensus 239 ~l~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 309 (576)
.-... ........+++.+.+... ..++.-++|||+++..+...++.++..+......+.+|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 000112233333322211 12445589999999988778888887776544555665554 4333332
Q ss_pred h-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 310 T-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 310 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
. ......+++.+++.++....+.+.+...+.. ...+....|++.++|.+--+..+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 3345789999999999999888776443321 12356788999999977555443
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=9.3e-06 Score=85.46 Aligned_cols=190 Identities=16% Similarity=0.147 Sum_probs=109.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.....-..... ..+...-.....|....
T Consensus 16 iGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-------~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 16 VGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPT-------SDPCGTCHNCISIKNSN 83 (491)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-------CCCccccHHHHHHhccC
Confidence 78888888888877543 2345889999999999999988875211000000 00111111111221111
Q ss_pred hCCC----CCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHHhh
Q 045012 241 ANDH----SKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATM 311 (576)
Q Consensus 241 ~~~~----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~~ 311 (576)
.... .......+++.+.+... ..++.-++|+|+++..+....+.++..+....+.+.+|++| ....+...+
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 0000 00111222222221111 13456689999998877667777777776555566666655 434443332
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
.....+.+.+++.++....+.+.+...+.. -..+....|++.++|.+-.+.
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 345788999999999999888876544321 123667789999999876443
No 52
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=6.3e-06 Score=89.10 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=110.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS- 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 239 (576)
+|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+......... + .+...-...+.+...
T Consensus 19 IGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 19 VGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQIDAGR 86 (709)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHhccC
Confidence 89999999999998643 2346789999999999999998876321111000 0 000000111111110
Q ss_pred ----hhCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh
Q 045012 240 ----IANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT 310 (576)
Q Consensus 240 ----l~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~ 310 (576)
+..... .....+.+.+.+... ..+++-++|+|+++..+......++..+......+.+|++|.+. .+...
T Consensus 87 ~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 87 YVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred ccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 000000 112222232222211 23566789999998776556666666665434456666666443 22222
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.+....+.+.+++.++....+.+.+-..+. ....+....|++.++|.+.-+..+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 233467888999999999988877654432 1124667889999999885554443
No 53
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.41 E-value=8.3e-06 Score=77.54 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=107.6
Q ss_pred hcCCcccccccc-chhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc--ceEEEEeCCCCC
Q 045012 152 LLNLKNVISDGK-EKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEDFD 228 (576)
Q Consensus 152 ~~~~~~~~~vGR-~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~ 228 (576)
.|.+.+.. +|- .+..-.....+.... +.....+.|+|+.|+|||.|.+++++. .....+ .++++ +
T Consensus 4 ~~tFdnfv-~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~------~ 71 (219)
T PF00308_consen 4 KYTFDNFV-VGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYL------S 71 (219)
T ss_dssp T-SCCCS---TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEE------E
T ss_pred CCccccCC-cCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceee------c
Confidence 34444433 353 333334444444432 234556899999999999999999984 333222 34454 3
Q ss_pred hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChh-hhhh----hccCCCCCCCCceEEEEec
Q 045012 229 VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN-SWCT----LSCPFGAGASGSKIVVTHR 303 (576)
Q Consensus 229 ~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~~----l~~~l~~~~~gs~ilvTtR 303 (576)
..++...+...+... .... ++..+. .-=+|++||++..... .|.. +...+. ..|.++|+|+.
T Consensus 72 ~~~f~~~~~~~~~~~------~~~~----~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~ 138 (219)
T PF00308_consen 72 AEEFIREFADALRDG------EIEE----FKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHHTT------SHHH----HHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEES
T ss_pred HHHHHHHHHHHHHcc------cchh----hhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeC
Confidence 456666666666541 2222 333333 3448899999764322 2322 222222 24668999996
Q ss_pred ch---------HHHHhhhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHh
Q 045012 304 NQ---------DVAATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGL 371 (576)
Q Consensus 304 ~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 371 (576)
.. .+...+.....+++.+++.++-.+++.+.+...+. +--++++.-|++.+.+..-.+.-+-..
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 53 22333445578999999999999999988765443 123577788888888777666555433
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.3e-06 Score=87.48 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-++.|.+++... .-...+.++|++|+||||+|+.+.+...-...+. ..+.+.-...+.|...-
T Consensus 19 vGq~~v~~~L~~~~~~~-----~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 19 IGQAPVVRALSNALDQQ-----YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-------ANPCNDCENCREIDEGR 86 (509)
T ss_pred cCCHHHHHHHHHHHHhC-----CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------cccCCCCHHHHHHhcCC
Confidence 79999999999999643 2345678999999999999998886321111110 00011111111111100
Q ss_pred hCC----CCCCCCCHHHHHHHHHH----hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh-
Q 045012 241 AND----HSKNDDDLNLLQEKLKK----QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT- 310 (576)
Q Consensus 241 ~~~----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~- 310 (576)
... ........++..+.+.. -..++.-++|+|+++..+....+.++..+......+.+|++|.+ ..+...
T Consensus 87 ~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI 166 (509)
T PRK14958 87 FPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV 166 (509)
T ss_pred CceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH
Confidence 000 00011222222222211 11355668999999987777777777777655456666665543 333322
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
......+++.+++.++....+...+-..+. . ...+....|++.++|.+--+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~---~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 167 LSRCLQFHLAQLPPLQIAAHCQHLLKEENV-E---FENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 223467889999999988777666543332 1 11355678999999988654443
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=4.9e-06 Score=80.16 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=92.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
.+.+.|+|++|+|||+|++.+++. ....-..+.++++..... ......+.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~~---- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVLEGMEQ---- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHHHHhhh----
Confidence 357899999999999999999874 222223345555432100 00111112211
Q ss_pred CeEEEEEeCCCCCCh-hhhhhhc-cCCCCC-CCC-ceEEEEecch---------HHHHhhhcccceecCCCChHHHHHHH
Q 045012 265 KKFLLVLDDVWNENY-NSWCTLS-CPFGAG-ASG-SKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVL 331 (576)
Q Consensus 265 kr~LlVlDdv~~~~~-~~~~~l~-~~l~~~-~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 331 (576)
--+|++||++.... ..|.... ..+... ..| .++|+||+.+ .+...+....++++.+++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 23789999966321 2343322 222111 123 4789998854 22233345578999999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
.+++...+. . --+++..-|++.+.|..-.+..+-..+
T Consensus 177 ~~~a~~~~~-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLRGF-E---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHcCC-C---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 876654322 2 224778889999998777666555443
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.38 E-value=4.2e-06 Score=80.40 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=88.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
....+.|+|++|+|||+||+.+++... ... ....+++..... .. + ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hhc-
Confidence 346788999999999999999987421 111 123344332210 00 0 011
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCC-CCCc-eEEEEecchHHHH--------hhhcccceecCCCChHHHHHHHHH
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAG-ASGS-KIVVTHRNQDVAA--------TMRAVSGKTLKELSDDDCLRVLIQ 333 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~ea~~L~~~ 333 (576)
...-+||+||++..+...-..+...+... ..+. .+|+|++...... .+.....+.+.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 23347899999764332222333333211 1233 4666666432211 222236889999999887777766
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 334 HSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
.+...+. .. -++....|++.+.|++..+..+...+
T Consensus 169 ~~~~~~v-~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERGL-QL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4432221 11 24677888999999999988877665
No 57
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=6e-06 Score=88.27 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=111.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|++..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+.+...- .-|... .+.+.-...+.+....
T Consensus 19 IGQe~iv~~L~~aI~~~-----rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~-~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 19 IGQELIKKILVNAILNN-----KLTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDG-DCCNSCSVCESINTNQ 86 (605)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCC-CCCcccHHHHHHHcCC
Confidence 79999999999888543 33467889999999999999998763211 112111 1111122222222211
Q ss_pred hCCC----CCCCCCHHHHH---HHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHHh-
Q 045012 241 ANDH----SKNDDDLNLLQ---EKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAAT- 310 (576)
Q Consensus 241 ~~~~----~~~~~~~~~l~---~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~- 310 (576)
.... .......+++. ..+... ..+++-++|+|+++..+...+..++..+......+.+|++| ....+...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 1000 00111222222 222211 12344579999998876667777777665444455555544 44344322
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLGG 370 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 370 (576)
......+++.+++.++....+...+...+. .. ..+.+..|++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKI-KI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 234578999999999999888876643321 11 13567889999999664 5544444
No 58
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.2e-05 Score=83.86 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=111.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE-eCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC-VSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~ 239 (576)
+|.+.-++.|..++..+ .-...+.++|++|+||||+|..+.+...-...+....|.. ...+...-...+.+...
T Consensus 19 iGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 19 TAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 78888888888888542 2345688999999999999999876322111111111110 01111111222222211
Q ss_pred hhCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHHh
Q 045012 240 IAND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAAT 310 (576)
Q Consensus 240 l~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~~ 310 (576)
.... ........+++.+..... ..+++-++|+|+++..+...+..+...+....+.+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 1110 000112233333322211 13456688999998877667777777776555566665554 44444333
Q ss_pred h-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 311 M-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 311 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
+ .....+++.+++.++....+...+-..+. .-..+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 23467889999999998888776543221 11246788899999998754443
No 59
>PRK09087 hypothetical protein; Validated
Probab=98.35 E-value=3.8e-06 Score=80.15 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=89.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
.+.+.|+|++|+|||+|++.+++... ..+++.. .+...++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh----------------------hhc
Confidence 36689999999999999998886421 1133221 111111111 111
Q ss_pred CeEEEEEeCCCCC--ChhhhhhhccCCCCCCCCceEEEEecch---------HHHHhhhcccceecCCCChHHHHHHHHH
Q 045012 265 KKFLLVLDDVWNE--NYNSWCTLSCPFGAGASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVLIQ 333 (576)
Q Consensus 265 kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~ 333 (576)
-+|++||++.. +...+-.+...+. ..|..+|+|++.. .....+.....+++.+++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999653 2233333333333 2366789888742 2333344557899999999999999998
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 334 HSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
.+...+. .. -+++..-|++.+.|..-++..+...|
T Consensus 165 ~~~~~~~-~l---~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 165 LFADRQL-YV---DPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHcCC-CC---CHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8754322 22 24778889999988887776544333
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.3e-05 Score=84.74 Aligned_cols=193 Identities=20% Similarity=0.273 Sum_probs=106.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHH--
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILK-- 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~-- 238 (576)
+|.+.-...|...+..+ .-++.+.++|++|+||||+|+.+.+....... .. ..+...-.....+..
T Consensus 17 vGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~------~~-~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 17 VGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENR------KG-VEPCNECRACRSIDEGT 84 (472)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccC------CC-CCCCcccHHHHHHhcCC
Confidence 78887777777777532 23456889999999999999999763211100 00 000000011111110
Q ss_pred -----hhhCCCCCCCCCHHHHH---HHHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHH
Q 045012 239 -----SIANDHSKNDDDLNLLQ---EKLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVA 308 (576)
Q Consensus 239 -----~l~~~~~~~~~~~~~l~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 308 (576)
.+... .....+.+. +.... -..+++-++|+|+++.......+.++..+........+|++|.+ ..+.
T Consensus 85 ~~dv~el~aa---~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 85 FMDVIELDAA---SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred CCccEEEeCc---ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh
Confidence 00000 011122222 11111 12345679999999776555556666666543334444444443 3333
Q ss_pred Hhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHHHhh
Q 045012 309 ATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLGGLL 372 (576)
Q Consensus 309 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~~L 372 (576)
..+ .....+.+.+++.++....+.+.+...+. . -..+....|++.++| ++.++..+-.+.
T Consensus 162 ~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-E---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 322 24468899999999998888877644322 1 123667788888865 567777776543
No 61
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.33 E-value=2.2e-05 Score=76.35 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=119.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
-++++.++|..+ .....+.+.|+|.+|+|||++++++....-... .--.++.+.....++...++..|+.+++
T Consensus 45 ~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 345555555544 245678899999999999999999986421111 1114667777888899999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcC-CeEEEEEeCCCCC------ChhhhhhhccCCCCCCCCceEEEEecchHHHHh----
Q 045012 242 NDHSKNDDDLNLLQEKLKKQLSG-KKFLLVLDDVWNE------NYNSWCTLSCPFGAGASGSKIVVTHRNQDVAAT---- 310 (576)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~---- 310 (576)
.+.. .......+.......++. +.-+||+|.+++. .+...-..+..|.+.-.=+-|.+-|+.---+-.
T Consensus 122 aP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 122 APYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 8876 444555555555555543 4458999999762 112222233334333344556666665322211
Q ss_pred -hhcccceecCCCChHH-HHHHHHHhh--hCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 311 -MRAVSGKTLKELSDDD-CLRVLIQHS--LGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~e-a~~L~~~~~--~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
.+...++.+.....++ ...|+.... ++-.. ..+-...++++.|...++|+.=-+..+
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 1134567777776554 444443321 12111 111234688999999999986555443
No 62
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=1.6e-05 Score=80.57 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=97.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+||+.|+.+|...|...+ ...++++.|+|++|+|||||++.+..... + ..++.... +..++++.++.+
T Consensus 264 FVGReaEla~Lr~VL~~~d---~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~LL~A 332 (550)
T PTZ00202 264 FVSREAEESWVRQVLRRLD---TAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSVVKA 332 (550)
T ss_pred CCCcHHHHHHHHHHHhccC---CCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHHHHH
Confidence 4999999999999997543 23456999999999999999999886322 1 13332233 679999999999
Q ss_pred hhCCCCCCC-CCHHHHHHHHHHhh-c-CCeEEEEEeCCCCCC-hhhhhhhccCCCCCCCCceEEEEecchHHHHhh---h
Q 045012 240 IANDHSKND-DDLNLLQEKLKKQL-S-GKKFLLVLDDVWNEN-YNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM---R 312 (576)
Q Consensus 240 l~~~~~~~~-~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~---~ 312 (576)
|+.+..... +-.+.+.+.+.+.- . +++.+||+-==...+ ..-+.+.. .|.....-|.|++---.+.+.... .
T Consensus 333 LGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 333 LGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCc
Confidence 997432111 22334444444332 2 566666663221111 11222211 222333456777654433222111 1
Q ss_pred cccceecCCCChHHHHHHHHHh
Q 045012 313 AVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 313 ~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
.-.-|.+.+++.++|.++-.+.
T Consensus 412 rldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cceeEecCCCCHHHHHHHHhhc
Confidence 2246788999999998766544
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2e-05 Score=84.64 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=107.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-++.|..++... .-.+.+.++|++|+||||+|+.+.......... . ..+...-.....+...-
T Consensus 19 vGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~------~-~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 19 VGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGV------T-ATPCGVCSACLEIDSGR 86 (527)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC------C-CCCCCCCHHHHHHhcCC
Confidence 78888888888888643 234567899999999999999987632111000 0 00111101111111000
Q ss_pred -----hCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh
Q 045012 241 -----ANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT 310 (576)
Q Consensus 241 -----~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 310 (576)
..... .....+++.+.+... ..+++-++|+|+++..+....+.++..+......+.+|++|.+ ..+...
T Consensus 87 ~~d~~ei~~~-~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 87 FVDLIEVDAA-SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred CCceeEeecc-ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchh
Confidence 00000 111222222222111 1356679999999887766677777776654455656555543 333322
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHH
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTL 368 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 368 (576)
......+++.+++.++....+.+.+...+. . ...+....|++.++|.+- |+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223468899999999999888776543322 1 123566789999999775 44444
No 64
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=7.7e-06 Score=90.50 Aligned_cols=168 Identities=22% Similarity=0.255 Sum_probs=95.2
Q ss_pred cccchhHH---HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKE---EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..+. .+...+.. .....+.|+|++|+||||||+.+++. ...+| +.++....
T Consensus 31 vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~--------- 88 (725)
T PRK13341 31 VGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLA--------- 88 (725)
T ss_pred cCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhh---------
Confidence 67766553 45555532 34567789999999999999999973 33333 11111000
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHhh--cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE--EecchH--HHHh-
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV--THRNQD--VAAT- 310 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~~~- 310 (576)
...+...........+ .+++.+|||||++..+...++.+...+. .|+.+++ ||.++. +...
T Consensus 89 ---------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 89 ---------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ---------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh
Confidence 0001111112221111 2467799999998766556656654433 3455555 344431 1111
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhC------CCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLG------AGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~------~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
......+.+.+++.++...++.+.+-. .... .-..+....|++.+.|..--+
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v---~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKV---DLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCccc---CCCHHHHHHHHHhCCCCHHHH
Confidence 123467999999999999998876541 1111 122466778888898864433
No 65
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.9e-05 Score=85.69 Aligned_cols=196 Identities=16% Similarity=0.170 Sum_probs=114.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccc--eEEEEeCCCCChhHHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEI--KAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~il~ 238 (576)
+|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+.+.......... ..+ .....-...+.|..
T Consensus 27 iGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 27 IGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 89999999999988643 33567899999999999999999873211110000 000 00111112222222
Q ss_pred hhhCCC----CCCCCCHHHHHH---HHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHH
Q 045012 239 SIANDH----SKNDDDLNLLQE---KLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAA 309 (576)
Q Consensus 239 ~l~~~~----~~~~~~~~~l~~---~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 309 (576)
.-.... .......+++.+ .+... ..+++-++|+|+++..+....+.++..+..-..++.+|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 111100 001122333322 22211 12455689999998877666777777765544566665544 4444433
Q ss_pred hh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 310 TM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 310 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.+ .....+.+.+++.++....+.+.+-..+. . ...+....|++.++|.+.-+....
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~---i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-E---VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 24468899999999999988877644332 1 123667889999999987665444
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=2.1e-06 Score=86.38 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC--ChhHHHHHHHHhhhCCCCCCCCCHH-----HHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF--DVSRVTQSILKSIANDHSKNDDDLN-----LLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~-----~l~ 255 (576)
+.-.-..|+|++|+|||||++.++++.... +|+..+|+.+.+.. .+.++++.+...+-......+.... ...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 344678899999999999999999975544 89999999998887 7778888776433222221111111 111
Q ss_pred HHHHHh-hcCCeEEEEEeCCCC
Q 045012 256 EKLKKQ-LSGKKFLLVLDDVWN 276 (576)
Q Consensus 256 ~~l~~~-l~~kr~LlVlDdv~~ 276 (576)
+.-+.. -.++++||++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 367999999999954
No 67
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.3e-05 Score=87.91 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=110.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS- 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 239 (576)
+|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+.+...-...... ..+..-...+.|...
T Consensus 18 iGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 18 IGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGG 85 (824)
T ss_pred cCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCC
Confidence 79888888898888643 23467889999999999999998764321111000 000000111111111
Q ss_pred --------hhCCCCCCCCCHHHHHH---HHH-HhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchH
Q 045012 240 --------IANDHSKNDDDLNLLQE---KLK-KQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQD 306 (576)
Q Consensus 240 --------l~~~~~~~~~~~~~l~~---~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 306 (576)
+... .....+++.+ .+. .-..++.-++|||+++..+...++.|+..+..-...+.+|++| ....
T Consensus 86 ~~~~dv~eidaa---s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 86 PGSLDVTEIDAA---SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCcEEEeccc---ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000 1112333322 111 1123556689999999988788888888777655566665555 4444
Q ss_pred HHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 307 VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 307 v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
+...+ .....|++..++.++..+++.+.+-..+. . ...+....|++.++|.+..+.
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 44333 34578999999999998888776533322 1 123556789999999884433
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3e-05 Score=80.24 Aligned_cols=177 Identities=14% Similarity=0.216 Sum_probs=103.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh------ccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ------RHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
+|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|+.+.+..... ..|...+. .....
T Consensus 20 ig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-~l~~~-------- 85 (367)
T PRK14970 20 VGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-ELDAA-------- 85 (367)
T ss_pred CCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-Eeccc--------
Confidence 79999888899888642 234688999999999999999987632110 11111110 01000
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHH----hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHHH
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKK----QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAA 309 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~~ 309 (576)
.....+++...+.+ -..+++-++++|+++......+..+...+......+.+|++| ....+..
T Consensus 86 ------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 86 ------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 11112222222111 012455689999997765556666655554333345555554 3332222
Q ss_pred h-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 310 T-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 310 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
. ......+++.++++++....+...+...+. .. ..+....|++.++|.+-.+..
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHHHHH
Confidence 2 223457899999999998888876654332 11 136778889999997664433
No 69
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=86.35 Aligned_cols=195 Identities=16% Similarity=0.173 Sum_probs=113.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+.+......... .....+.-...+.+....
T Consensus 19 iGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 19 VGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred cCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCC
Confidence 79888888888888643 2345678999999999999999986321100000 011122223344443322
Q ss_pred hCCC----CCCCCCHHHH---HHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh
Q 045012 241 ANDH----SKNDDDLNLL---QEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM 311 (576)
Q Consensus 241 ~~~~----~~~~~~~~~l---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~ 311 (576)
.... .......+++ .+.+... ..+++-++|+|+++..+....+.++..+......+.+|++|.+ ..+...+
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 2110 0011222322 2222211 1245678999999877666677777666554455666665543 3333222
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
.....+.+.+++.++....+...+...+. .. ..+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NL---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23467889999999988888777654332 11 236678899999999875554443
No 70
>PF14516 AAA_35: AAA-like domain
Probab=98.22 E-value=0.00024 Score=72.10 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=114.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC-----CChhHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED-----FDVSRVTQS 235 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 235 (576)
|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| ..+++++..- .+...+++.
T Consensus 14 i~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred cCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 78886666777777542 368999999999999999999874332 233 3446665431 245555555
Q ss_pred HHHhhhCCCCC----------CCCCHHHHHHHHHHhh---cCCeEEEEEeCCCCCCh------hhhhhhccCCCCCC---
Q 045012 236 ILKSIANDHSK----------NDDDLNLLQEKLKKQL---SGKKFLLVLDDVWNENY------NSWCTLSCPFGAGA--- 293 (576)
Q Consensus 236 il~~l~~~~~~----------~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~~--- 293 (576)
++..+...-.. ...........+.+.+ .+++.+|+||+++.... +-+..++.......
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 55444332210 1112222333344332 26899999999965321 11111221111110
Q ss_pred -CCc--eEEEEecchHHHHh-----hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 294 -SGS--KIVVTHRNQDVAAT-----MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 294 -~gs--~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
... -|++.+........ +.-...+.|.+++.+|...|+..+...-. ....++|...+||+|..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCCHHHH
Confidence 111 12222211111111 11235788999999999999887642211 133889999999999999
Q ss_pred HHHHHhhccC
Q 045012 366 KTLGGLLSVK 375 (576)
Q Consensus 366 ~~~~~~L~~~ 375 (576)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999764
No 71
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=2e-05 Score=75.89 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=93.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.|+|.+|+|||.|++.+++. ....-..++|++.. ++... ... +.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~---------------~~~----~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR---------------GPE----LLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh---------------hHH----HHHhhhh
Confidence 367899999999999999999873 22222345566542 11110 011 2222222
Q ss_pred CeEEEEEeCCCCCC-hhhhhh-hccCCCC-CCCCceEEEEecchHH---------HHhhhcccceecCCCChHHHHHHHH
Q 045012 265 KKFLLVLDDVWNEN-YNSWCT-LSCPFGA-GASGSKIVVTHRNQDV---------AATMRAVSGKTLKELSDDDCLRVLI 332 (576)
Q Consensus 265 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~L~~ 332 (576)
-. +||+||+.... ...|.. +...+.. ...|..+|+|++.... ...+.....+++.+++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899996432 124433 3332221 1246678888875322 1222234678899999999999998
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 333 QHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
.++...+. ..+ +++..-|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66644321 222 4778889999998877766655444
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=5.5e-05 Score=81.67 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=112.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS- 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 239 (576)
+|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+...-..... ..+.+.-...+.|...
T Consensus 16 vGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 16 VGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNG 83 (584)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhccc
Confidence 79888889999988643 2345678999999999999999886321111000 0011111111222110
Q ss_pred --------hhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHH
Q 045012 240 --------IANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAA 309 (576)
Q Consensus 240 --------l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~ 309 (576)
+........++..++.+.+... ..+++-++|+|+++..+....+.++..+......+.+|+ ||....+..
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 0000000112222232222211 134566899999988877777787777765445555555 544444443
Q ss_pred h-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHHHh
Q 045012 310 T-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLGGL 371 (576)
Q Consensus 310 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~~ 371 (576)
. ......+++.+++.++..+.+.+.+...+. . ...+....|++.++|.+- ++..+-.+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGV-V---VDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 234578999999999998888776644332 1 113566778999999774 44444443
No 73
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.5e-05 Score=81.46 Aligned_cols=196 Identities=16% Similarity=0.206 Sum_probs=112.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+..++.|...+... .-...+.++|+.|+||||+|+.+.+...-..... ...++.-...+.|....
T Consensus 19 iGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 19 AGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGM 86 (624)
T ss_pred cCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCC
Confidence 68777777777777532 2346788999999999999999887422111000 00111112222222111
Q ss_pred hCCC----CCCCCCHHHHH---HHHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh-
Q 045012 241 ANDH----SKNDDDLNLLQ---EKLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT- 310 (576)
Q Consensus 241 ~~~~----~~~~~~~~~l~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~- 310 (576)
.... .......+++. +.+.. -..+++-+||+|+++..+......++..+........+|++|.+ ..+...
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000 00011122222 22211 12356679999999887766777777776543345555555544 444332
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh-HHHHHHHHhh
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP-LAAKTLGGLL 372 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~~L 372 (576)
......+++.+++.++....+...+...+. . -..+.+..|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGV-D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223468899999999999888876544332 1 12466788999999965 6777776554
No 74
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=6.9e-05 Score=81.95 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=108.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcc-c---cceEEE-EeCCCCChhHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-F---EIKAWT-CVSEDFDVSRVTQS 235 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f---~~~~wv-~~~~~~~~~~~~~~ 235 (576)
+|.+.-++.|...+... .-.+.+.++|+.|+||||+|+.++...-.... . +|.... +....++..
T Consensus 21 iGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi----- 90 (725)
T PRK07133 21 VGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII----- 90 (725)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE-----
Confidence 78888888888888643 33567789999999999999998763111000 0 000000 000000000
Q ss_pred HHHhhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEE-EEecchHHHHh-hh
Q 045012 236 ILKSIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIV-VTHRNQDVAAT-MR 312 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~~-~~ 312 (576)
.+.........+..++.+.+... ..+++-++|+|+++......+..++..+-.....+.+| +|+....+... ..
T Consensus 91 ---eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 91 ---EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS 167 (725)
T ss_pred ---EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh
Confidence 00000000111122333322211 23566699999998877777777777665443444444 45554444433 33
Q ss_pred cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHH
Q 045012 313 AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLG 369 (576)
Q Consensus 313 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 369 (576)
....+.+.+++.++....+...+...+. . ...+.+..|++.++|.+- |+..+-
T Consensus 168 Rcq~ieF~~L~~eeI~~~L~~il~kegI-~---id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 168 RVQRFNFRRISEDEIVSRLEFILEKENI-S---YEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hceeEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4578999999999999888776543322 1 113557789999999765 444433
No 75
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.0001 Score=78.33 Aligned_cols=190 Identities=14% Similarity=0.140 Sum_probs=106.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch--hcc-ccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV--QRH-FEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|-+.-...|.+++... .-.+...++|+.|+||||+|+.+.....- ... .+|.. -.-...+-
T Consensus 19 iGq~~i~~~L~~~i~~~-----~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~----------c~nc~~i~ 83 (486)
T PRK14953 19 IGQEIVVRILKNAVKLQ-----RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK----------CENCVEID 83 (486)
T ss_pred cChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc----------cHHHHHHh
Confidence 78888888888888543 23456788999999999999988763210 000 01100 00000000
Q ss_pred H-------hhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe-cchHHH
Q 045012 238 K-------SIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVA 308 (576)
Q Consensus 238 ~-------~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 308 (576)
. .+........++...+.+.+... ..+++-++|+|+++..+....+.+...+....+...+|++| +...+.
T Consensus 84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 0 00000000111122222222211 13566799999998776556666666665444455555544 433333
Q ss_pred Hh-hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 309 AT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 309 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.. ......+.+.+++.++....+...+-..+. . ...+.+..|++.++|.+..+....
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-E---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 223467899999999998888876544332 1 123567788999999776554444
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=3.4e-05 Score=81.39 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=102.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
..-+.|+|..|+|||+|++.+.+.......-..++++ +..++...+...+.... + ..+.+++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~-~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------K-EIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------h-HHHHHHHHhc-
Confidence 3568899999999999999998832211111223333 34567777777665311 1 1223333333
Q ss_pred CeEEEEEeCCCCCCh-hhh-hhhccCCCC-CCCCceEEEEecchH---------HHHhhhcccceecCCCChHHHHHHHH
Q 045012 265 KKFLLVLDDVWNENY-NSW-CTLSCPFGA-GASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRVLI 332 (576)
Q Consensus 265 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L~~ 332 (576)
..-+||+||++.... ..+ +.+...+.. ...|..||+|+.... +...+...-.+.+.+++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 344888999975431 122 223222221 123457888876432 22223345678899999999999999
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 333 QHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
+.+-..+. . ..-.+++..-|++.++|.|-.+.-+...+
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 88754321 0 02235788899999999998887766443
No 77
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.15 E-value=9.6e-06 Score=83.71 Aligned_cols=176 Identities=18% Similarity=0.156 Sum_probs=96.3
Q ss_pred cccchhHHHHHHHHhcCCCC-------CCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLR-------PDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|+++.+++|.+.+...-.. +-..++-+.|+|++|+|||+||+.+++. ....| +.+.. ..+
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~~l- 192 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SEL- 192 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----HHH-
Confidence 78999999988876432110 1134566999999999999999999983 22222 22211 111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------h---hhhhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------Y---NSWCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~gs~ 297 (576)
..... ......+...+...-...+.+|+||+++... . ..+..+...+.. ...+..
T Consensus 193 ---~~~~~------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 193 ---VRKYI------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred ---HHHhh------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 11100 0111112222222223567899999986521 1 112222222221 124667
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
||.||....... .+ .....+.+...+.++..++|..+....... .... ...+++.+.|..
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 888887543211 11 123568899999999999998876543321 1112 355677777653
No 78
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=6.2e-05 Score=75.90 Aligned_cols=171 Identities=14% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh-------CCCCCCCCCHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA-------NDHSKNDDDLNLLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-------~~~~~~~~~~~~l~ 255 (576)
.-.+.+.++|+.|+|||++|..+....--..... ..+.+.=...+.+...-. .......-..+++.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 3457788999999999999988876421111000 000000011111111000 00000112233333
Q ss_pred HH---HHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-hhcccceecCCCChHHHHH
Q 045012 256 EK---LKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-MRAVSGKTLKELSDDDCLR 329 (576)
Q Consensus 256 ~~---l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~ 329 (576)
+. +... ..+++-++|+|+++..+....+.++..+.....++.+|+||.+. .+... .+....+.+.+++.+++.+
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 32 2211 12344456789999988888888887776555667777777665 33323 2345789999999999998
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 330 VLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 330 L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
.+...... . ..+.+..++..++|.|+....+
T Consensus 173 ~L~~~~~~-~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPE-S-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhccc-C-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 88765311 1 1244567789999999865544
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00014 Score=79.22 Aligned_cols=199 Identities=17% Similarity=0.185 Sum_probs=110.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE-eCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC-VSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~~ 239 (576)
+|-+.-+..|...+..+ .-...+.++|+.|+||||+|+.+.+.......+....|.. +..+...-...+.+...
T Consensus 19 vGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 19 TAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 78888888888887542 2345688999999999999988876422111111001111 00111111222222111
Q ss_pred hhCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHh
Q 045012 240 IAND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAAT 310 (576)
Q Consensus 240 l~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~ 310 (576)
-... ........+++...+... ..+++-++|+|+++..+....+.+...+..-...+.+|+ |++...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 000112234443332222 234556889999988766667777777765444555554 4444444333
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHH
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTL 368 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 368 (576)
......+++.+++.++....+.+.+...+. . -..+.+..|++.++|..- ++..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~---I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI-Q---IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 234578999999999988888766543221 1 124677889999999555 44433
No 80
>CHL00181 cbbX CbbX; Provisional
Probab=98.10 E-value=0.00024 Score=70.45 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=72.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.++|++|+|||++|+.++........-....|+.++. .+ +...+.+.. .......+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34578999999999999999976321111111222444441 12 222222111 11122233322
Q ss_pred CeEEEEEeCCCCC---------ChhhhhhhccCCCCCCCCceEEEEecchHHHHhh--------hcccceecCCCChHHH
Q 045012 265 KKFLLVLDDVWNE---------NYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM--------RAVSGKTLKELSDDDC 327 (576)
Q Consensus 265 kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~ea 327 (576)
..-+|++|++... .......+...+.....+..||+++......... .-...+.+.+++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2359999999642 1112223334444444456677777544332111 1234688999999999
Q ss_pred HHHHHHhhhC
Q 045012 328 LRVLIQHSLG 337 (576)
Q Consensus 328 ~~L~~~~~~~ 337 (576)
.+++...+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 8888777643
No 81
>PRK06620 hypothetical protein; Validated
Probab=98.08 E-value=2.3e-05 Score=74.17 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=83.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + . .. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~---~----~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E---E----IL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h---h----HH-hc
Confidence 6789999999999999998877431 1 1111 0000 0 0 0 01 12
Q ss_pred eEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH-------HHhhhcccceecCCCChHHHHHHHHHhhhCC
Q 045012 266 KFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-------AATMRAVSGKTLKELSDDDCLRVLIQHSLGA 338 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 338 (576)
.-+|++||++..+....-.+...+. ..|..+|+|++.+.. ...+....++++++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899997432222222222222 246689998875422 2223344589999999999888887776432
Q ss_pred CCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 339 GVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
+. . --+++..-|++.+.|.--.+.-+-.
T Consensus 164 ~l-~---l~~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 164 SV-T---ISRQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred CC-C---CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 21 1 1247788888888887665544433
No 82
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00014 Score=77.37 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=110.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-.+.|...+..+ .-.++..++|+.|+||||+|+.+.+..--....+. .+...-.....+....
T Consensus 17 iGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 17 IGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENR 84 (535)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcC
Confidence 78888888888888543 33457789999999999999988763210000000 0000001111111100
Q ss_pred hCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-
Q 045012 241 AND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT- 310 (576)
Q Consensus 241 ~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~- 310 (576)
... ........+++.+.+... ..+++-++|+|+++..+......++..+....+.+.+|++|.+. .+...
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 000 000111233333333221 12456689999998887777777777775544566766666553 22221
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
......+++.+++.++....+...+...+. . -..+.+..|++.++|.+--+....
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~---i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGV-S---YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 223468899999999999888776644332 1 124677889999999885554443
No 83
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=6.8e-06 Score=83.20 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC--CChhHHHHHHHHhhhCCCCCCCCCH-----HHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED--FDVSRVTQSILKSIANDHSKNDDDL-----NLLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~l~ 255 (576)
..-..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.++..+-......+... ....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 34567899999999999999999986443 37999999999866 7899999998655443332121111 1111
Q ss_pred HHHHHh-hcCCeEEEEEeCCCC
Q 045012 256 EKLKKQ-LSGKKFLLVLDDVWN 276 (576)
Q Consensus 256 ~~l~~~-l~~kr~LlVlDdv~~ 276 (576)
+..... -.+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 358999999999965
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.08 E-value=0.0002 Score=71.03 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=72.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
.-+.++|++|+|||++|+.+..............++.++. . +++..+.+.. .......+... .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---c
Confidence 3588999999999999987765321111112223454442 1 2222222211 11222233322 2
Q ss_pred eEEEEEeCCCCC---------ChhhhhhhccCCCCCCCCceEEEEecchHHHHhhh--------cccceecCCCChHHHH
Q 045012 266 KFLLVLDDVWNE---------NYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR--------AVSGKTLKELSDDDCL 328 (576)
Q Consensus 266 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~ea~ 328 (576)
.-+|+||++... ....+..+...+.....+.+||+++.......... -...+++.+++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368999999632 11223344444444445666777765432221111 1256889999999999
Q ss_pred HHHHHhhhC
Q 045012 329 RVLIQHSLG 337 (576)
Q Consensus 329 ~L~~~~~~~ 337 (576)
+++...+-.
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 988776543
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.07 E-value=7.1e-05 Score=84.96 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=84.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEE-EEeCCCCChhHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAW-TCVSEDFDVSRVT 233 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~ 233 (576)
+.+||+.++.++++.|... ...-+.++|++|+||||+|+.+.+...... -....+| +.++.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~-------- 253 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL-------- 253 (852)
T ss_pred cccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh--------
Confidence 3499999999999999653 334567999999999999999987321110 0112232 21111
Q ss_pred HHHHHhhhCCCCCCCCCH-HHHHHHHHHhh-cCCeEEEEEeCCCCCC-------hhhhhhhccCCCCCCCCceEEEEecc
Q 045012 234 QSILKSIANDHSKNDDDL-NLLQEKLKKQL-SGKKFLLVLDDVWNEN-------YNSWCTLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~-~~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~ 304 (576)
+..... ...+. +.+...+.+.- .+++.+|++|+++... ..+-..++.+.... ..-++|-||..
T Consensus 254 ------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 254 ------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred ------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 000000 01111 22222222221 2468999999986532 11111122222221 23456666655
Q ss_pred hHHHHh-------hhcccceecCCCChHHHHHHHHHhh
Q 045012 305 QDVAAT-------MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 305 ~~v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
++.... ......+.+.+++.++..++|....
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1234689999999999999975443
No 86
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00013 Score=79.65 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=108.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHH--
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILK-- 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~-- 238 (576)
+|.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+............ ....+.-...+.+-.
T Consensus 20 iGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~------~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 20 VGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD------GEACNECESCVAFNEQR 88 (614)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC------CCCCCcchHHHHHhcCC
Confidence 79888889999988643 23467889999999999999887763211000000 000000000000000
Q ss_pred -----hhhCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHH
Q 045012 239 -----SIANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVA 308 (576)
Q Consensus 239 -----~l~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 308 (576)
.+... .....+++...+... ..+++-++|+|+++..+...++.++..+..-..++.+|+ |+....+.
T Consensus 89 ~~n~~~ld~~---~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 89 SYNIHELDAA---SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred CCceEEeccc---ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 00000 111123332222111 124455889999988777777777777765445566555 44444444
Q ss_pred Hhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 309 ATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 309 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
..+ .....+++.+++.++....+...+...+. . ...+.+..|++.++|..--+..
T Consensus 166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~---i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-T---AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 332 34578999999999999888876544332 1 1135678899999997654433
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00011 Score=77.58 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=105.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc-cceEEEEeCCCCChhHHHHHHHH-
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF-EIKAWTCVSEDFDVSRVTQSILK- 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~- 238 (576)
+|.+..+..|.+++..+ .-.+.+.++|++|+||||+|+.+.+...-...- +.. ....-...+.+..
T Consensus 20 iGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~-------~c~~c~~C~~i~~~ 87 (451)
T PRK06305 20 LGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE-------PCNQCASCKEISSG 87 (451)
T ss_pred cCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC-------CCcccHHHHHHhcC
Confidence 79898899888888643 234678899999999999998887632111000 000 0000000000000
Q ss_pred ------hhhCCCCCCCCCHHHHHHHHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh
Q 045012 239 ------SIANDHSKNDDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT 310 (576)
Q Consensus 239 ------~l~~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 310 (576)
.+.+......++...+.+.+.. -..+++-++|+|+++.......+.+...+......+.+|++|.. ..+...
T Consensus 88 ~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 88 TSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167 (451)
T ss_pred CCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence 0000000001112222222111 11256678999999776555566666666554445666665533 333222
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHH
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTL 368 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~ 368 (576)
......+++.++++++....+...+-..+. ....+.+..|++.++|.+- |+..+
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 224467899999999998888776543221 1124677889999999764 44443
No 88
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.06 E-value=3.4e-05 Score=74.12 Aligned_cols=181 Identities=19% Similarity=0.191 Sum_probs=111.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEE-EEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAW-TCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~il~~ 239 (576)
+|-+..+.-|.+.+.. ...+....+||+|.|||+-|..++...--.+.|++++. .++|..-... +.+.
T Consensus 39 ~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~---- 107 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE---- 107 (346)
T ss_pred cchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh----
Confidence 5777777777777754 35688999999999999999888874333345665543 2333322211 1110
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhh--cCCe-EEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh-hcc
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQL--SGKK-FLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM-RAV 314 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~ 314 (576)
...+...+........ .-++ -++|||+++....+.|..+...+......++.++.+.. ..+...+ ...
T Consensus 108 -------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 108 -------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred -------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 1111111111111011 0123 47899999999999999998888776666665554443 2222211 233
Q ss_pred cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH
Q 045012 315 SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL 363 (576)
Q Consensus 315 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 363 (576)
..+..++|..++...-+...+-..+.. -..+..+.|++.++|.--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~----~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVD----IDDDALKLIAKISDGDLR 225 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCcHH
Confidence 578899999999999888887654432 124667889999988533
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.03 E-value=4.9e-05 Score=77.00 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=79.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+...+.+..++..+ ..+.++.++|++|+|||++|+.+++.. ... ...++.+. .. ....+..+...
T Consensus 24 ~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l~~~ 91 (316)
T PHA02544 24 ILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRLTRF 91 (316)
T ss_pred cCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHHHHH
Confidence 78888888898888642 345678889999999999999998732 111 22333332 11 11111111111
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC-ChhhhhhhccCCCCCCCCceEEEEecchH-HHHhh-hcccce
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-NYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-RAVSGK 317 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~ 317 (576)
.... -+.+.+-+||+|+++.. .......+...+.....++.+|+||.... +...+ .....+
T Consensus 92 ~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 92 ASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred HHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0000 01134568999999765 22222333333333345678888886542 11111 223466
Q ss_pred ecCCCChHHHHHHHH
Q 045012 318 TLKELSDDDCLRVLI 332 (576)
Q Consensus 318 ~l~~L~~~ea~~L~~ 332 (576)
.+...+.++..+++.
T Consensus 156 ~~~~p~~~~~~~il~ 170 (316)
T PHA02544 156 DFGVPTKEEQIEMMK 170 (316)
T ss_pred EeCCCCHHHHHHHHH
Confidence 777777777765554
No 90
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.02 E-value=9.7e-05 Score=72.51 Aligned_cols=138 Identities=11% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
+...-+.++|++|+||||+|+.+++...-........++.++. .++ ..... ........+.+...
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l----~~~~~------g~~~~~~~~~~~~a- 104 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADL----VGEYI------GHTAQKTREVIKKA- 104 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHh----hhhhc------cchHHHHHHHHHhc-
Confidence 3456788999999999999999986321111111112333321 111 11110 11112222333322
Q ss_pred cCCeEEEEEeCCCCCC--------hhhhhhhccCCCCCCCCceEEEEecchHHHH------hh-hc-ccceecCCCChHH
Q 045012 263 SGKKFLLVLDDVWNEN--------YNSWCTLSCPFGAGASGSKIVVTHRNQDVAA------TM-RA-VSGKTLKELSDDD 326 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~------~~-~~-~~~~~l~~L~~~e 326 (576)
...+|++|+++... ......+...+........+++++...+... .. .. ...+.+++++.++
T Consensus 105 --~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~e 182 (261)
T TIGR02881 105 --LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEE 182 (261)
T ss_pred --cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHH
Confidence 23489999997521 1123334444433333345555554332211 11 11 2457889999999
Q ss_pred HHHHHHHhhhC
Q 045012 327 CLRVLIQHSLG 337 (576)
Q Consensus 327 a~~L~~~~~~~ 337 (576)
-.+++.+.+..
T Consensus 183 l~~Il~~~~~~ 193 (261)
T TIGR02881 183 LMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHH
Confidence 98888876643
No 91
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.02 E-value=0.0002 Score=68.25 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=99.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.++-++.+.=++..... ....+--+.++|++|.||||||.-+.+. ....+. ++.+...
T Consensus 29 iGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~l------------- 88 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPAL------------- 88 (332)
T ss_pred cChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccc-------------
Confidence 6777766666655544332 3566788999999999999999999984 322221 1111111
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCC--------CCCCCC-----------ceEEEE
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPF--------GAGASG-----------SKIVVT 301 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l--------~~~~~g-----------s~ilvT 301 (576)
....++...|.. | ...=+|++|.++..+...-+.+..++ ...+++ +-|=.|
T Consensus 89 --------eK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 89 --------EKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred --------cChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 111222222221 1 12235566666554321111111111 111122 234458
Q ss_pred ecchHHHHhhh--cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 302 HRNQDVAATMR--AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 302 tR~~~v~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
||.-.+...+. ..-+.+++--+.+|-.++..+.+..-+. +-.++.+.+|+++..|-|--..-+.+.+
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 88765544333 2246678888899998888887743332 1224678899999999997655554444
No 92
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.00027 Score=71.85 Aligned_cols=198 Identities=18% Similarity=0.135 Sum_probs=117.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+||+.|+..+.+++...-. ....+.+-|.|-+|.|||.+...++.+..-...-..+++++...-.....++..|...
T Consensus 152 l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 48999999999999976643 4567889999999999999999998754322222345666665545677888888887
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcC--CeEEEEEeCCCCCChhhhhhhccCCCC-CCCCceEEEEecchHH------HHh
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSG--KKFLLVLDDVWNENYNSWCTLSCPFGA-GASGSKIVVTHRNQDV------AAT 310 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v------~~~ 310 (576)
+.......... .+.+..+..+... ..+|+|+|..+.-....-..+...|.+ .-+++++|+.---..+ ...
T Consensus 230 ~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 230 LLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 73222111122 4444555555543 368999999855321111223333322 2356666554322111 111
Q ss_pred hh-----cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH
Q 045012 311 MR-----AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL 363 (576)
Q Consensus 311 ~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 363 (576)
+. ....+...|-+.++-.++|..+.-..... ..+...++.++++|.|.-=
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS---IFLNAAIELCARKVAAPSG 363 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc---ccchHHHHHHHHHhccCch
Confidence 11 23567788999999999999887543321 1222344445555544433
No 93
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.01 E-value=4.5e-05 Score=85.80 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=83.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch---hccc-cceEEEEeCCCCChhHHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV---QRHF-EIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~~~~wv~~~~~~~~~~~~~ 234 (576)
+.+||+++++++++.|... ...-+.++|++|+|||++|+.+++.... ...+ ...+|. + +..
T Consensus 183 ~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~---- 247 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMG---- 247 (731)
T ss_pred cccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHH----
Confidence 3489999999999998643 3345679999999999999999874211 1111 233332 1 111
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCCC---------hhhhhhhccCCCCCCCCceEEEEecc
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNEN---------YNSWCTLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~ 304 (576)
.++.. .. ...+.+.....+.+.+ ..++.+|++|+++... ...-+.+...+.. ..-.+|-+|..
T Consensus 248 ~l~a~---~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 248 SLLAG---TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred HHhhh---cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 11110 00 0112222222222222 3468999999996421 0111122222221 12344554443
Q ss_pred hHHHH------h-hhcccceecCCCChHHHHHHHHHhh
Q 045012 305 QDVAA------T-MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 305 ~~v~~------~-~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.+... . ......+.+.+++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32211 1 1234678999999999999998654
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00028 Score=76.30 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=110.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-++.|..++... .-.+.+.++|+.|+||||+|+.+++..--...... .+.+.-...+.+...-
T Consensus 19 iGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 19 EGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDN 86 (563)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCC
Confidence 78888888898888643 34567889999999999999998874211110000 0000000111111110
Q ss_pred hCC----CCCCCCCHHHHHHHH---HH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh
Q 045012 241 AND----HSKNDDDLNLLQEKL---KK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM 311 (576)
Q Consensus 241 ~~~----~~~~~~~~~~l~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~ 311 (576)
... ........+++.+.. .. -..+++-++|+|+++..+...++.++..+......+.+|++|.. ..+...+
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 000112233333222 11 12356668999999887777777787777654455666655543 3333222
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
.....+++.+++.++....+...+...+. +-..+.+..|++.++|.+-.+...
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23467899999999998888876644332 112466778999999988544433
No 95
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00024 Score=77.72 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=111.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.-...|..++... .-.+.+.++|+.|+||||+|+.+++..... ..... .......-...+.+....
T Consensus 19 iGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 19 VGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIAAGN 88 (620)
T ss_pred cChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHhcCC
Confidence 78888888888888643 223578899999999999999998742111 10000 001112223333333222
Q ss_pred hCCC----CCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh
Q 045012 241 ANDH----SKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM 311 (576)
Q Consensus 241 ~~~~----~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~ 311 (576)
.... .......+.+.+.+... ..+++-++|+|+++..+...+..++..+......+.+|++|.+ ..+...+
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1110 00112233333333211 1245568999999887767777777777654445555554443 3333222
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
.....+.+..++.++....+.+.+...+. .. ..+.+..|++.++|.+..+.....
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~i---s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EI---EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23467888899999888877766543221 11 135678899999998865544433
No 96
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=7.6e-05 Score=78.64 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccc-c-ceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF-E-IKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
..-+.|+|++|+|||+|++.+++. ....+ . .++|++ ..+++..+...+... .... +++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT------SEKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 445899999999999999999984 33332 2 344554 345666666655421 1222 22233
Q ss_pred cCCeEEEEEeCCCCCC-----hhhhhhhccCCCCCCCCceEEEEec-chHHHH--------hhhcccceecCCCChHHHH
Q 045012 263 SGKKFLLVLDDVWNEN-----YNSWCTLSCPFGAGASGSKIVVTHR-NQDVAA--------TMRAVSGKTLKELSDDDCL 328 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~--------~~~~~~~~~l~~L~~~ea~ 328 (576)
..+.-+|++||++... ...+-.+...+.. .|..||+||. .+.-.. .+.....+.+.+.+.+.-.
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 3345689999997431 1112222222222 2456888874 332211 1223457789999999999
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 329 RVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 329 ~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
.++.+.+...+. .. -+++..-|++.+.|..-.+.-+
T Consensus 270 ~IL~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 270 KIARKMLEIEHG-EL---PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHHhcCC-CC---CHHHHHHHHhccccCHHHHHHH
Confidence 999888754322 12 2467888888888865544433
No 97
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.95 E-value=0.0001 Score=77.28 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=93.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccc--cceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
...+.|+|++|+|||+|++.+++. ..... ..+++++ ..++...+...+... ..+.....++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~~~~~~--- 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEFKEKYR--- 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHHHHHHH---
Confidence 456889999999999999999984 33332 2344553 334455555555321 2233333332
Q ss_pred cCCeEEEEEeCCCCCChhh-h-hhhccCCCCC-CCCceEEEEecch-HHH--------HhhhcccceecCCCChHHHHHH
Q 045012 263 SGKKFLLVLDDVWNENYNS-W-CTLSCPFGAG-ASGSKIVVTHRNQ-DVA--------ATMRAVSGKTLKELSDDDCLRV 330 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~ilvTtR~~-~v~--------~~~~~~~~~~l~~L~~~ea~~L 330 (576)
+ .-+|+|||++...... + ..+...+... ..+..+|+|+... ... ..+.....+.+.+.+.++-..+
T Consensus 199 -~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 199 -S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred -h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 2 3489999997532111 1 1222222110 1345678877642 111 1122234688999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 331 LIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
+.+.+...+. .. -+++...|++.+.|.+-.+.-+
T Consensus 277 l~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 277 LQKKAEEEGL-EL---PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 9888755332 11 2477788889998877654443
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00026 Score=77.16 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=109.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.-++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+...-..... ..+.+.-.....|...-
T Consensus 19 iGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 19 TGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGR 86 (576)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 78888888888888643 2346778999999999999998876321111100 00111111111111100
Q ss_pred -------hCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHhh
Q 045012 241 -------ANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAATM 311 (576)
Q Consensus 241 -------~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~ 311 (576)
........++..++.+.+... ..+++-++|+|+++..+....+.++..+......+.+|+ ||....+...+
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000000111222222222211 124556899999988776677777777655444555555 54444444332
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh-HHHHHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP-LAAKTLGG 370 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P-Lai~~~~~ 370 (576)
.....+++.+++.++....+...+-..+. . -..+....|++.++|.. .|+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGI-S---ISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34567889999999988877765543322 1 12366778999999966 45555433
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00039 Score=75.40 Aligned_cols=190 Identities=16% Similarity=0.177 Sum_probs=108.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+...+.|.+++... .-.+.+.++|+.|+||||+|+.+.........- ...+.+.-...+.+....
T Consensus 19 iGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 19 VGQEHITKTLKNAIKQG-----KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGS 86 (559)
T ss_pred cCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCC
Confidence 79999999999988653 335677889999999999999887632111000 011111112222222211
Q ss_pred hCCC----CCCCCCHH---HHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchHHHHhh
Q 045012 241 ANDH----SKNDDDLN---LLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAATM 311 (576)
Q Consensus 241 ~~~~----~~~~~~~~---~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~ 311 (576)
.... .......+ ++.+.+... ..++.-++|+|+++......+..+...+......+.+|+ ||....+...+
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 1100 00112222 222222211 235667889999988776677777766654434445554 44443333322
Q ss_pred -hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 312 -RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 312 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
.....+.+.+++.++....+...+-..+. .. ..+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGI-EY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 23467889999999998888776643332 11 13667788899998776443
No 100
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.93 E-value=6.5e-05 Score=85.55 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=84.4
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch---hccc-cceEEEEeCCCCChhHHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV---QRHF-EIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f-~~~~wv~~~~~~~~~~~~~ 234 (576)
+.+||+++++++++.|... ...-+.++|++|+|||++|+.++..... .... ...+|. + +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH--
Confidence 3499999999999999643 2345679999999999999999874211 1111 234442 1 11111
Q ss_pred HHHHhhhCCCCCCCCCHHH-HHHHHHHhhcCCeEEEEEeCCCCCC-------hhhhhhhccCCCCCCCCceEEEEecchH
Q 045012 235 SILKSIANDHSKNDDDLNL-LQEKLKKQLSGKKFLLVLDDVWNEN-------YNSWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
+. +.. ...+.+. +...+.+.-..++.+|++|+++... ......++.+.... ..-++|.+|...+
T Consensus 247 --~a---g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 --LA---GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred --hc---cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 11 111 1112222 2222322224578999999995311 00111222222211 2345666665554
Q ss_pred HHHh-------hhcccceecCCCChHHHHHHHHHh
Q 045012 307 VAAT-------MRAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 307 v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
.... ......+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221 123456788889999988887643
No 101
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.90 E-value=0.00082 Score=63.55 Aligned_cols=119 Identities=24% Similarity=0.246 Sum_probs=67.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.+++.|++-...-- .+.+..-+.++|..|+|||+|++.+.+...-.. .--|.+...
T Consensus 30 ~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------------- 89 (249)
T PF05673_consen 30 IGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------------- 89 (249)
T ss_pred cCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------------
Confidence 677777777766543322 123456778899999999999999987432111 111222211
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCC---CC-CceEEEEecchHH
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAG---AS-GSKIVVTHRNQDV 307 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~-gs~ilvTtR~~~v 307 (576)
...++..+.+.++. ...||+|++||+.- .....+..+...|..+ .+ +..|..||.....
T Consensus 90 ------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 33445555555553 35799999999843 2223455555544332 22 3344445544433
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.89 E-value=6.8e-05 Score=77.84 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=94.2
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|++..+++|.+.+...-. -+-..++-|.++|++|+|||++|+.+++. .... |+.++. .+
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~----~~-- 200 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG----SE-- 200 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----HH--
Confidence 6899999998887643110 01245677899999999999999999873 2222 233221 11
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------hhh---hhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNS---WCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~---~~~l~~~l~~--~~~gs~ 297 (576)
+..... ......+...+...-...+.+|+||+++... ... ...+...+.. ...+..
T Consensus 201 --l~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~ 272 (389)
T PRK03992 201 --LVQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVK 272 (389)
T ss_pred --HhHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEE
Confidence 111111 0111122222222224567899999996521 111 1112211211 123566
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||.||....... .+ .-...+.+.+.+.++-.++|..+...... ..... ...+++.+.|.
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 777776543221 11 12356889999999999999877643321 11112 34566666664
No 103
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.87 E-value=6.5e-05 Score=77.49 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=73.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.++...+..+++..+-
T Consensus 178 ~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--- 246 (459)
T PRK11331 178 FIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--- 246 (459)
T ss_pred cCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC---
Confidence 77888899999888643 5688899999999999999988544445677788999988877665543221
Q ss_pred hCCCCCCCCCHHHHHHHHHHhh--cCCeEEEEEeCCCCCChhh-hhhhccCC
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYNS-WCTLSCPF 289 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~-~~~l~~~l 289 (576)
.....-......+.+.+.... .+++++||+|++...+... +..+...+
T Consensus 247 -P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 -PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred -CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 110000000011122222222 2468999999997765433 34444333
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.87 E-value=0.00015 Score=77.12 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhcccc--ceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
...-+.|+|++|+|||+|++.+.+. ....++ .+++++ ..++...+...+... ......+ .
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~~~----~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVT------SEKFTNDFVNALRNN------TMEEFKE----K 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHcC------cHHHHHH----H
Confidence 3456899999999999999999984 444432 233443 334445555554321 1222322 3
Q ss_pred hcCCeEEEEEeCCCCCChhh--hhhhccCCCC-CCCCceEEEEecchH--H-------HHhhhcccceecCCCChHHHHH
Q 045012 262 LSGKKFLLVLDDVWNENYNS--WCTLSCPFGA-GASGSKIVVTHRNQD--V-------AATMRAVSGKTLKELSDDDCLR 329 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~~--v-------~~~~~~~~~~~l~~L~~~ea~~ 329 (576)
+. +.-+|||||++...... ...+...+.. ...|..+|+||.... + ...+.....+.+.+.+.++-..
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 34489999996532111 1222221111 012445788776532 1 1222233578999999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 330 VLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 330 L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
++.+.+...+. . --+++..-|++.++|..-.+.-+
T Consensus 288 il~~~~~~~~~-~---l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 288 ILKKKAEEEGI-D---LPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHcCC-C---CCHHHHHHHHcCcCCCHHHHHHH
Confidence 99988754321 1 12477888999999887654433
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00019 Score=75.53 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=87.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
..-+.|+|++|+|||+|++.+.+.. ......+++++ ...+...+...+... .. +.++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 3568899999999999999999843 22223344443 334445555554321 11 22333333
Q ss_pred CeEEEEEeCCCCCChhhh--hhhccCCCC-CCCCceEEEEecch-HH--------HHhhhcccceecCCCChHHHHHHHH
Q 045012 265 KKFLLVLDDVWNENYNSW--CTLSCPFGA-GASGSKIVVTHRNQ-DV--------AATMRAVSGKTLKELSDDDCLRVLI 332 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTtR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~L~~ 332 (576)
..-+|++||++......+ +.+...+.. ...|..||+||... .- ...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 345888999966432111 122222210 01355788888542 11 1122234678899999999999998
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 333 QHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
+.+-..+. .. -+++..-|+..+.|.-
T Consensus 282 ~k~~~~~~-~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSI-RI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhcCCCH
Confidence 87754332 12 1356666777776543
No 106
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00071 Score=67.91 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=110.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch-------------hccccceEEEEeCCCC
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV-------------QRHFEIKAWTCVSEDF 227 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~~~~ 227 (576)
+|.+..++.+...+..+ .-.+...++|+.|+||+++|..+.+..-- ...++...|+.-....
T Consensus 7 iGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 7 IGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred CCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 68888888888888643 23579999999999999999877653110 1123333444211000
Q ss_pred ChhHHHHHHHHhhhCCC-CCCCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEE
Q 045012 228 DVSRVTQSILKSIANDH-SKNDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVT 301 (576)
Q Consensus 228 ~~~~~~~~il~~l~~~~-~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT 301 (576)
+-..+...-+...+... ....-..++.. .+.+.+ .+++-++|+|+++..+......++..+-.-.+..-|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 00000001111111000 00111222222 222222 356678999999888777777777776543333334444
Q ss_pred ecchHHHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 302 HRNQDVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 302 tR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
+....+...+ +....+++.+++.++..+.+........ .......++..++|.|..+..+.
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 4444443333 3457899999999999999987642211 01113578899999997665543
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=2.9e-05 Score=67.33 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=19.4
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 108
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00077 Score=67.45 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCC
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVF 341 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 341 (576)
+++-++|+|+++..+...-..++..+-.-..++.+|++|.+ ..+...+ +....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 45679999999888777777777777655567767666664 3333332 345778999999999988886531 1
Q ss_pred CCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 342 NIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 342 ~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
. ...+..++..++|.|+....+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 0 1335678999999999765443
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.78 E-value=0.00031 Score=80.38 Aligned_cols=155 Identities=13% Similarity=0.118 Sum_probs=83.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcc----ccceEEEEeCCCCChhHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~ 235 (576)
.+||+.++++++..|... ....+.++|++|+|||++|+.+......... ....+|.. +.. .
T Consensus 175 ~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~----~ 239 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMG----A 239 (852)
T ss_pred CCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHH----H
Confidence 499999999999999643 3345668999999999999988874211100 12223321 111 1
Q ss_pred HHHhhhCCCCCCCCCHH-HHHHHHHHhhc-CCeEEEEEeCCCCCCh-------hhhhhhccCCCCCCCCceEEEEecchH
Q 045012 236 ILKSIANDHSKNDDDLN-LLQEKLKKQLS-GKKFLLVLDDVWNENY-------NSWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~-~l~~~l~~~l~-~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
++. +.. ...+.+ .+...+...-. +++.+|++|+++.... .+-..++.+.... ..-.+|.+|..++
T Consensus 240 l~a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e 313 (852)
T TIGR03346 240 LIA---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDE 313 (852)
T ss_pred Hhh---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHH
Confidence 110 000 011222 22222322222 4689999999964310 1112233333222 2344555555443
Q ss_pred HHHh-------hhcccceecCCCChHHHHHHHHHhh
Q 045012 307 VAAT-------MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 307 v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.-.. ......+.+...+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3211 1234568899999999999887653
No 110
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.78 E-value=8.1e-05 Score=82.94 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=85.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc---c-ccceEEEEeCCCCChhHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR---H-FEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~~ 235 (576)
.+||+.++.++++.|... ...-+.++|++|+|||++|+.+++...... . ..+.+|.. +.. .
T Consensus 188 liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~ 252 (758)
T PRK11034 188 LIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----S 252 (758)
T ss_pred CcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----H
Confidence 499999999999999753 224456899999999999999886321111 1 12333321 111 1
Q ss_pred HHHhhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCC--------ChhhhhhhccCCCCCCCCceEEEEecchH
Q 045012 236 ILKSIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNE--------NYNSWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
++. +.. ...+.+.....+...+ +.++.+|++|+++.. ...+...++.++... ..-++|-+|..++
T Consensus 253 lla---G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E 326 (758)
T PRK11034 253 LLA---GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_pred Hhc---ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHH
Confidence 111 110 1112222222222222 346789999999642 112222233333322 2344555555444
Q ss_pred HHHh-------hhcccceecCCCChHHHHHHHHHhh
Q 045012 307 VAAT-------MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 307 v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.... ......+.+.+++.++..+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 1234679999999999999998653
No 111
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0012 Score=66.19 Aligned_cols=166 Identities=11% Similarity=0.048 Sum_probs=95.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC------CCCCCCCCHHHHHH-
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN------DHSKNDDDLNLLQE- 256 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~------~~~~~~~~~~~l~~- 256 (576)
-.....++|+.|+||+++|..+....--..... ..+.+.=...+.+...-.+ +.....-..+++.+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l 95 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREI 95 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHH
Confidence 357888999999999999988876321111000 0000111111111110000 00001122333332
Q ss_pred --HHHH-hhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-hhcccceecCCCChHHHHHHH
Q 045012 257 --KLKK-QLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-MRAVSGKTLKELSDDDCLRVL 331 (576)
Q Consensus 257 --~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~ 331 (576)
.+.. -..+++-++|+|+++..+......++..+-...+++.+|++|.+. .+... .+....+.+.+++.++..+.+
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 2221 113566688899999988888888888887666677777777654 34333 334578999999999999888
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
...... + ...+...+..++|.|+..
T Consensus 176 ~~~~~~-------~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 176 QAQSSA-------E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHhcc-------C--hHHHHHHHHHcCCCHHHH
Confidence 765311 0 123556788999999644
No 112
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00027 Score=75.91 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=93.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccc--cceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+.|+|..|+|||.|++.+++. ....+ ..+++++ ..+++.++...+... ..+. +++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~~----f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGDS----FRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHHH----HHHHhh
Confidence 45899999999999999999984 33222 2234443 344555555444321 1222 222332
Q ss_pred CCeEEEEEeCCCCCCh-hhhh-hhccCCCC-CCCCceEEEEecch---------HHHHhhhcccceecCCCChHHHHHHH
Q 045012 264 GKKFLLVLDDVWNENY-NSWC-TLSCPFGA-GASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVL 331 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 331 (576)
+ .=+|||||++.... ..|. .+...+.. ...|..|||||... .+...+.....+.+.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 35888999976422 1222 22222211 12355688888753 12233345568899999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
.+++...+. .. -.++..-|++.+.+..-.|.-+
T Consensus 456 ~kka~~r~l-~l---~~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 456 RKKAVQEQL-NA---PPEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHHhccCCHHHHHHH
Confidence 988755432 22 2467777888877765444433
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.77 E-value=0.00013 Score=72.28 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=113.4
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
.+|+.++..+..++.... ..-+..|.|+|.+|.|||.+.+++.+... -..+|+++-+.++...++..|+.+.
T Consensus 9 ~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 689999999999886543 23456679999999999999999998542 1358999999999999999999998
Q ss_pred hCCCC-CCC-----CCHHHHHHHHHH--hhc--CCeEEEEEeCCCCCChhhhhh--------hccCCCCCCCCceEEEEe
Q 045012 241 ANDHS-KND-----DDLNLLQEKLKK--QLS--GKKFLLVLDDVWNENYNSWCT--------LSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 241 ~~~~~-~~~-----~~~~~l~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~--------l~~~l~~~~~gs~ilvTt 302 (576)
+..+. ... .+.......+.+ ... ++.++||||+++... +.+. +-..++ .+ .-+|+++
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~--~~-~i~iils 155 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLN--EP-TIVIILS 155 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhC--CC-ceEEEEe
Confidence 62222 111 122223333333 112 468999999996531 1111 111111 12 2334443
Q ss_pred cch---HHHHhhhcc--cceecCCCChHHHHHHHHHhhhCCCCCCC-CchHHHHHHHHHHhcCCChHHHHHHHHh
Q 045012 303 RNQ---DVAATMRAV--SGKTLKELSDDDCLRVLIQHSLGAGVFNI-RQSLKEVAEKIAKKCKGLPLAAKTLGGL 371 (576)
Q Consensus 303 R~~---~v~~~~~~~--~~~~l~~L~~~ea~~L~~~~~~~~~~~~~-~~~~~~~~~~I~~~c~G~PLai~~~~~~ 371 (576)
-.. ......+.. .++....-+.+|...++.+.-.+....+. ..-+.-+.+-....|+ -+-.+..++..
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 322 111112322 35567778888888887654322111000 0112223344556666 55555555543
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00049 Score=70.33 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=86.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
....+.|+|..|.|||.|++++.+ ....+.+....+.+ +.......++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 567899999999999999999999 44455543333333 3445555555554331 123444444
Q ss_pred CCeEEEEEeCCCCCC-----hhhhhhhccCCCCCCCCceEEEEecch---------HHHHhhhcccceecCCCChHHHHH
Q 045012 264 GKKFLLVLDDVWNEN-----YNSWCTLSCPFGAGASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLR 329 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 329 (576)
.-=++++||++... ++..-.+...+... |..||+|++.. .+...+...-.+.+.+.+.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 33488899996522 12222333334332 44899999653 233344456789999999999999
Q ss_pred HHHHhhhCCCC
Q 045012 330 VLIQHSLGAGV 340 (576)
Q Consensus 330 L~~~~~~~~~~ 340 (576)
++.+.+...+.
T Consensus 252 iL~kka~~~~~ 262 (408)
T COG0593 252 ILRKKAEDRGI 262 (408)
T ss_pred HHHHHHHhcCC
Confidence 99987655443
No 115
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.0014 Score=65.55 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-hhcccceecCCCChHHHHHHHHHhhhCCCCC
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVF 341 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 341 (576)
++.-++|+|+++..+....+.++..+-.-.+++.+|++|.+. .+... .+....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 455689999999988888888888887656677776666654 34433 3355789999999999998886541 1
Q ss_pred CCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 342 NIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 342 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
. ....++..++|.|+....+
T Consensus 182 ~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-------hHHHHHHHcCCCHHHHHHH
Confidence 0 1346788999999977554
No 116
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=0.00021 Score=62.28 Aligned_cols=88 Identities=18% Similarity=0.028 Sum_probs=46.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC-
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG- 264 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~- 264 (576)
..+.|+|++|+||||+++.++... .......+++..+........... ........ ...........+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999998742 222223445544433222221111 11111111 112222222233333333
Q ss_pred CeEEEEEeCCCCCC
Q 045012 265 KKFLLVLDDVWNEN 278 (576)
Q Consensus 265 kr~LlVlDdv~~~~ 278 (576)
+..+|++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 34999999997753
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.69 E-value=0.00019 Score=74.93 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=85.7
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|.+..+++|.+.+.-.-. -+-..++-+.++|++|+|||+||+.+++. ....| +.+... ++
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s----eL- 253 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS----EL- 253 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----hh-
Confidence 5788888888776632110 01234567889999999999999999983 33333 222110 11
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------h---hhhhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------Y---NSWCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~gs~ 297 (576)
..... ......+...+.....+.+.+|+||+++... . .....++..+.. ...+..
T Consensus 254 ---~~k~~------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 254 ---IQKYL------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred ---hhhhc------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 11110 1111222333333334678999999974310 0 011112222211 123567
Q ss_pred EEEEecchHHHHh-h----hcccceecCCCChHHHHHHHHHhhhC
Q 045012 298 IVVTHRNQDVAAT-M----RAVSGKTLKELSDDDCLRVLIQHSLG 337 (576)
Q Consensus 298 ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~ 337 (576)
||+||........ + .-...+.+...+.++..++|..+...
T Consensus 325 VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 325 VIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred EEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 8888876543322 1 12357888999999999999876543
No 118
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0018 Score=65.58 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcc---ccce-----EEEEeCCCCChhHHHHHHHH
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH---FEIK-----AWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~-----~wv~~~~~~~~~~~~~~il~ 238 (576)
-+++.+.+.+ +.-...+.++|+.|+||+++|..+....--... -.|. -++..+..+|+..+
T Consensus 11 ~~~l~~~~~~-----~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQA-----GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHc-----CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 3445555543 244678899999999999999887653110000 0000 01111111121100
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-hh
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-MR 312 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~ 312 (576)
.+......-..+++.+..... ..+++-++|+|+++..+...-..++..+-.-..++.+|++|.+. .+... .+
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 000000112233333322211 13566799999999888778888888887656677777766654 34433 33
Q ss_pred cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHH
Q 045012 313 AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAK 366 (576)
Q Consensus 313 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~ 366 (576)
....+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|....
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 45788999999999988886542 1 11 2336678999999997543
No 119
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.65 E-value=0.00065 Score=61.32 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=76.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh------------------ccccceEEEEe
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ------------------RHFEIKAWTCV 223 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 223 (576)
|-+...+.|.+.+..+ .-+..+.++|+.|+||+++|..+.+..--. ..++...|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4455566677777543 345678999999999999998887632111 11222333322
Q ss_pred CCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceE
Q 045012 224 SEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKI 298 (576)
Q Consensus 224 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 298 (576)
.... ..-..+++. .+...+ .++.=++|+||++..+......++..+-....++.+
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2110 012233333 222222 245668999999998888888888888766678888
Q ss_pred EEEecchH-HHHhh-hcccceecCCCC
Q 045012 299 VVTHRNQD-VAATM-RAVSGKTLKELS 323 (576)
Q Consensus 299 lvTtR~~~-v~~~~-~~~~~~~l~~L~ 323 (576)
|++|.+.. +...+ .....+.+.+++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 88887653 22222 233556666553
No 120
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0016 Score=66.12 Aligned_cols=160 Identities=9% Similarity=0.076 Sum_probs=88.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 163 KEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 163 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
-+.-.+.+.+.+..+ .-++...++|+.|+|||++|..+.+..--....... +...-...+.+...-.+
T Consensus 11 q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 11 QPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 445566666666432 345778999999999999998886532111100000 00000111111100000
Q ss_pred -----CCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHh-h
Q 045012 243 -----DHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAAT-M 311 (576)
Q Consensus 243 -----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~ 311 (576)
.........+++.+.+... ..+.+-++|+|+++..+....+.++..+.....++.+|++|.+. .+... .
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 0000112233333322221 23456689999998877767777877777655677777777653 33332 2
Q ss_pred hcccceecCCCChHHHHHHHHHh
Q 045012 312 RAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 312 ~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
+....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 34578999999999998888653
No 121
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.63 E-value=0.012 Score=67.01 Aligned_cols=162 Identities=21% Similarity=0.206 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+.-+++|.+++...........+++.++|++|+|||++|+.+.+. ....|- -++++...+..+ +...
T Consensus 323 ~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~----i~g~- 392 (775)
T TIGR00763 323 YGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAE----IRGH- 392 (775)
T ss_pred CChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHH----HcCC-
Confidence 688888888888664321111233458999999999999999999973 322221 122232222221 1110
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhh----hhhhccC--------CCCC-------CCCceEEEE
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNS----WCTLSCP--------FGAG-------ASGSKIVVT 301 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~--------l~~~-------~~gs~ilvT 301 (576)
...-.......+.+.+...-. .+-+|+||.++...... ...+... |... ..+..+|.|
T Consensus 393 --~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T 469 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT 469 (775)
T ss_pred --CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe
Confidence 000011112233344444333 33478999996643210 0111111 1111 123334445
Q ss_pred ecchH-HH-HhhhcccceecCCCChHHHHHHHHHhh
Q 045012 302 HRNQD-VA-ATMRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 302 tR~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
|.... +. ........+.+.+++.++-.+++....
T Consensus 470 tN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 470 ANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred cCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 54432 11 112234678999999988888776543
No 122
>PRK08116 hypothetical protein; Validated
Probab=97.63 E-value=0.00016 Score=70.93 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=59.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
..+.|+|.+|+|||.||..+++.. ......+++++ ..+++..+........ ..+...+ .+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~~----~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENEI----IRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHHH----HHHhcCC
Confidence 458899999999999999999853 33333345554 3445555554443221 1222222 2333333
Q ss_pred eEEEEEeCCCCCChhhhhh--hccCCCCC-CCCceEEEEecch
Q 045012 266 KFLLVLDDVWNENYNSWCT--LSCPFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~~ 305 (576)
. ||||||+.......|.. +...+... ..+..+|+||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996544344533 22222211 2456789998754
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.62 E-value=0.00058 Score=77.90 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+||+.+++++++.|... ....+.++|++|+|||+||+.+...
T Consensus 180 vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 499999999999999653 3345679999999999999998873
No 124
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.0025 Score=60.11 Aligned_cols=183 Identities=16% Similarity=0.227 Sum_probs=106.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC-CCCChhHHHHHHHHhhhCCCCCC-CCCHHHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-EDFDVSRVTQSILKSIANDHSKN-DDDLNLLQEKLKK 260 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~-~~~~~~l~~~l~~ 260 (576)
.+.+++.++|.-|.|||.+.+..... ..+ +.++-+.+. +..+...+...++..+....... ..-.++....|..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 44579999999999999999944431 111 112223333 44567778888888887632211 1122333334444
Q ss_pred hh-cCCe-EEEEEeCCCCCChhhhhhhccCCCC---CCCCceEEEEecch--------HHHHhhhcccc-eecCCCChHH
Q 045012 261 QL-SGKK-FLLVLDDVWNENYNSWCTLSCPFGA---GASGSKIVVTHRNQ--------DVAATMRAVSG-KTLKELSDDD 326 (576)
Q Consensus 261 ~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ilvTtR~~--------~v~~~~~~~~~-~~l~~L~~~e 326 (576)
.. ++++ ..+++|+.........+.++..... ...--+|+..-..+ .....-..... |.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4566 8999999987665555544332211 11112233332211 11111112233 8999999999
Q ss_pred HHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 327 CLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 327 a~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
...++..+..+...+. +--..+....|..+..|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9988887766553321 112246677899999999999998874
No 125
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0029 Score=67.91 Aligned_cols=162 Identities=21% Similarity=0.227 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-++-+++|++.|.-..-...-.-++++++||||||||+|++.++. .....|- -+++++--|..++
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI-------- 392 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI-------- 392 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh--------
Confidence 78899999999998543221234558999999999999999999997 4444442 2233332232221
Q ss_pred hCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhh----hhhhccCCCCCC-------------CCce-EEEE
Q 045012 241 ANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNS----WCTLSCPFGAGA-------------SGSK-IVVT 301 (576)
Q Consensus 241 ~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~-------------~gs~-ilvT 301 (576)
.++.-. -..-...+.+.+++. +.+.-|++||.++...... -..++..|.+.. -=|. +.||
T Consensus 393 RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 393 RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 111000 111123344444433 4466788999986532110 001221121110 0133 3445
Q ss_pred ecch-H--HHHhhhcccceecCCCChHHHHHHHHHhhh
Q 045012 302 HRNQ-D--VAATMRAVSGKTLKELSDDDCLRVLIQHSL 336 (576)
Q Consensus 302 tR~~-~--v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 336 (576)
|-+. + .+..+....++++.+-+++|=.++-+++..
T Consensus 472 TANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 472 TANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 5432 2 123344668899999999998877666543
No 126
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.57 E-value=0.0043 Score=69.91 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=85.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.++-+++|.++|......+.....++.++|++|+||||+++.++.. ....| .-+..+...+...+...--...
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~~~~~ 399 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHRRTYI 399 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccchhccC
Confidence 788899999998886422111234568999999999999999999862 22222 1133333223221111100001
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhh----hhhhccCCCC---------------CCCCceEEEE
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNS----WCTLSCPFGA---------------GASGSKIVVT 301 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ilvT 301 (576)
......+...+...- ...-+|+||.++...... ...+...+.+ .-.+..+|.|
T Consensus 400 -------g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 400 -------GSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred -------CCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 111122333343322 233478899996543211 1222222221 1123444556
Q ss_pred ecchHHHHh-hhcccceecCCCChHHHHHHHHHhh
Q 045012 302 HRNQDVAAT-MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 302 tR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
+....+... .+....+.+.+++.++-.++..++.
T Consensus 472 aN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 644322221 2244688999999999888776665
No 127
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0026 Score=64.26 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh-hhcccceecCCCChHHHHHHHHHhhhCCCCC
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT-MRAVSGKTLKELSDDDCLRVLIQHSLGAGVF 341 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 341 (576)
++.-++|+|+++..+....+.++..+-.-.+++.+|++|.+ ..+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 45568899999999888888888888766667766665554 444433 3345789999999999999887651 1
Q ss_pred CCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 342 NIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 342 ~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
. + ...++..++|.|+....+
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999765444
No 128
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00063 Score=74.07 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=100.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC---CChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED---FDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il 237 (576)
+|-++.++++..++..... .....+++.|+|++|+||||+++.++... .++..-|.+-... .+...+...+.
T Consensus 87 ~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l----~~~~~Ew~npv~~~~~~~~~~~~~s~~ 161 (637)
T TIGR00602 87 AVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL----GIQVQEWSNPTLPDFQKNDHKVTLSLE 161 (637)
T ss_pred cCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh----hhHHHHHhhhhhhcccccccccchhhh
Confidence 7888888999998865432 12334689999999999999999998732 1222334221100 00011111222
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHH---h----hcCCeEEEEEeCCCCC---Chhhhhhhcc-CCCCCCCCceEEEEecchH
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKK---Q----LSGKKFLLVLDDVWNE---NYNSWCTLSC-PFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~---~----l~~kr~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~ilvTtR~~~ 306 (576)
.++..... .......+...... . ..+++.+|+||++... .......++. .+...+.-.-|++||-+..
T Consensus 162 ~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~ 240 (637)
T TIGR00602 162 SCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLE 240 (637)
T ss_pred hccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCcc
Confidence 22211110 11112222222111 1 1356789999999432 1123334433 2222222234555553211
Q ss_pred ---------HH------Hhh---hcccceecCCCChHHHHHHHHHhhhCCCCCCCCc---hHHHHHHHHHHhcCCChHHH
Q 045012 307 ---------VA------ATM---RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQ---SLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 307 ---------v~------~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~---~~~~~~~~I~~~c~G~PLai 365 (576)
.. ..+ .....+.+.|++..+-...+...+-......... ...+....|+..++|---.+
T Consensus 241 ~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsA 320 (637)
T TIGR00602 241 GDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSA 320 (637)
T ss_pred ccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHH
Confidence 00 011 1224588999999997776666553321100000 11356677888888854443
Q ss_pred HHHHHh
Q 045012 366 KTLGGL 371 (576)
Q Consensus 366 ~~~~~~ 371 (576)
......
T Consensus 321 In~LQf 326 (637)
T TIGR00602 321 INSLQF 326 (637)
T ss_pred HHHHHH
Confidence 333333
No 129
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.51 E-value=0.001 Score=69.47 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+||++.++.+...+..+ .-|.|.|++|+|||+||+.+..
T Consensus 23 ~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 23 YERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred cCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHH
Confidence 89999999999988754 3588999999999999999987
No 130
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0011 Score=68.88 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=120.0
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCe
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKK 266 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr 266 (576)
++.|.|+-++||||+++.+... ..+. .++++..+......-+.+ ....+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d------------------~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD------------------LLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH------------------HHHHHHHhhccCC
Confidence 9999999999999999666652 1121 455544332111111111 1111222112277
Q ss_pred EEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHh-----h-hcccceecCCCChHHHHHHHHHhhhCCCC
Q 045012 267 FLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAAT-----M-RAVSGKTLKELSDDDCLRVLIQHSLGAGV 340 (576)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~-----~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 340 (576)
.+|+||.|+.. ..|......+.+.++. +|++|+-+...... . +....+.+-||+..|...+-....
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999775 5788888888776655 88888877544322 1 234678899999999876432000
Q ss_pred CCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHH
Q 045012 341 FNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAY 420 (576)
Q Consensus 341 ~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ 420 (576)
.. ... +..-.-.-.+||.|-++..-...-. ..+....++...... ..-..=+...++.+.+
T Consensus 168 -~~-~~~-~~~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~-------------~~~~~~~~~~k~i~~~ 228 (398)
T COG1373 168 -EP-SKL-ELLFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIE-------------RGKIENADLMKRILRF 228 (398)
T ss_pred -ch-hHH-HHHHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHH-------------HcCcccHHHHHHHHHH
Confidence 00 011 1133344567899988754322111 011111222111111 1000001345555555
Q ss_pred hccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHHHCCCcee
Q 045012 421 CSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRKFVRELHSRSLFQQ 473 (576)
Q Consensus 421 ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~ 473 (576)
++..+. ..+.-..+...+- + ....+...|++.|.+.-++..
T Consensus 229 l~~~~g-~~~s~~~la~~l~----------~-is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 229 LASNIG-SPISYSSLARELK----------G-ISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHhhcC-CccCHHHHHHHHh----------c-cchHHHHHHHHHHHHhhheEE
Confidence 555433 3455555555431 0 125667888888888877764
No 131
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.46 E-value=0.00099 Score=69.02 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=92.4
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-+..+++|.+.+..+-. -+-..++-+.++|++|+|||+||+.+++. ....| +.+.. ..
T Consensus 148 gGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s~-- 214 (398)
T PTZ00454 148 GGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----SE-- 214 (398)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----HH--
Confidence 6788888777776532100 01235678999999999999999999983 22222 22211 11
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------h---hhhhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------Y---NSWCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~gs~ 297 (576)
+..... ......+.+.+.......+.+|+||+++..- . ..+..+...+.. ...+..
T Consensus 215 --l~~k~~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 215 --FVQKYL------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred --HHHHhc------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 111111 1112223333334445678999999985420 0 011222222221 124567
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||+||....... .+ .-...+.+...+.++-.++|......... ....+ ...+++.+.|.
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVD----LEDFVSRPEKI 350 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccC----HHHHHHHcCCC
Confidence 788887543321 11 12345788888888888888765533221 11122 34556666664
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.0029 Score=62.07 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=27.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.-+.|.|++|+|||+||+.+.+ .... ....++.....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3567999999999999999986 2211 23345555544444443
No 133
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0024 Score=70.15 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=84.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
.++-+.++|++|+|||+||+.+++.. . ..++.++.. ++. .... ......+...+.....
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~f~----~~~~------g~~~~~vr~lF~~A~~ 273 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----EFV----EMFV------GVGAARVRDLFKKAKE 273 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----HHH----HHhh------hhhHHHHHHHHHHHhc
Confidence 35678999999999999999998732 1 123333211 111 1100 0112233444555556
Q ss_pred CCeEEEEEeCCCCCC----------hhh----hhhhccCCCC--CCCCceEEEEecchHHHH-hh----hcccceecCCC
Q 045012 264 GKKFLLVLDDVWNEN----------YNS----WCTLSCPFGA--GASGSKIVVTHRNQDVAA-TM----RAVSGKTLKEL 322 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L 322 (576)
..+++|++|+++... ... +..++..+.. ...+..||.||....... .+ .-...+.+...
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence 789999999995421 111 2223322221 234556676776643322 11 12356788888
Q ss_pred ChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC
Q 045012 323 SDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG 360 (576)
Q Consensus 323 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 360 (576)
+.++-.++|+.++..... ........+++.+.|
T Consensus 354 d~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 354 DREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred CHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 888888888877643211 112345678888887
No 134
>PRK10536 hypothetical protein; Provisional
Probab=97.43 E-value=0.00089 Score=64.08 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=73.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE----eCC-----CCChhH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC----VSE-----DFDVSR 231 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~-----~~~~~~ 231 (576)
.+|......+..+|.. ..++.+.|++|+|||+||..+..+.-....|...+... .++ +-+..+
T Consensus 58 ~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 58 LARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 6788888888888853 24999999999999999988776422233444333221 111 011111
Q ss_pred ----HHHHHHHhhhCCCCCCCCCHHHHHH--------HHHHhhcCCeE---EEEEeCCCCCChhhhhhhccCCCCCCCCc
Q 045012 232 ----VTQSILKSIANDHSKNDDDLNLLQE--------KLKKQLSGKKF---LLVLDDVWNENYNSWCTLSCPFGAGASGS 296 (576)
Q Consensus 232 ----~~~~il~~l~~~~~~~~~~~~~l~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 296 (576)
.+.-+...|..-.. ....+.+.. .=-.+++++.+ +||+|.+.+.+......+...+ +.+|
T Consensus 130 K~~p~~~pi~D~L~~~~~--~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~s 204 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLG--ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENV 204 (262)
T ss_pred HHHHHHHHHHHHHHHHhC--hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCC
Confidence 11222222211100 011111100 00124456554 9999999988776666666554 4689
Q ss_pred eEEEEecch
Q 045012 297 KIVVTHRNQ 305 (576)
Q Consensus 297 ~ilvTtR~~ 305 (576)
++|+|--..
T Consensus 205 k~v~~GD~~ 213 (262)
T PRK10536 205 TVIVNGDIT 213 (262)
T ss_pred EEEEeCChh
Confidence 999987643
No 135
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.41 E-value=0.0012 Score=69.95 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=85.8
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcc-----ccceEEEEeCCCCC
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-----FEIKAWTCVSEDFD 228 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~ 228 (576)
.|.+..+++|.+.+..+-. -+-..++-+.++|++|+|||++|+.+++.. ... +....++.+...
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccch--
Confidence 5788888888777532100 012345678999999999999999999843 222 122334443321
Q ss_pred hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCC-------hhh-----hhhhccCCCC--CC
Q 045012 229 VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNEN-------YNS-----WCTLSCPFGA--GA 293 (576)
Q Consensus 229 ~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~--~~ 293 (576)
+++....+. .......+....+.. ..+++++|+||+++..- ... ...+...+.. ..
T Consensus 261 ------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111111000 001111222222222 23578999999996421 001 1123222221 11
Q ss_pred CCceEEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhh
Q 045012 294 SGSKIVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 294 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.+..||.||....... .+ .-...+.+...+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445566665443221 11 123458899999999999998875
No 136
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0033 Score=64.91 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
..++..+.+.|++|+|||+||..+.. ...|+.+--++-.+-. +.. +......+.......
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G~s---EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------GLS---ESAKCAHIKKIFEDA 594 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------Ccc---HHHHHHHHHHHHHHh
Confidence 34567788999999999999999875 3567754433211100 000 112222333444445
Q ss_pred hcCCeEEEEEeCCCCCChhhhhh---------------hccCCCCCCCCceEEEEecchHHHHhhh----cccceecCCC
Q 045012 262 LSGKKFLLVLDDVWNENYNSWCT---------------LSCPFGAGASGSKIVVTHRNQDVAATMR----AVSGKTLKEL 322 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~~~~~~---------------l~~~l~~~~~gs~ilvTtR~~~v~~~~~----~~~~~~l~~L 322 (576)
-++.--+||+||+... -+|-. ++...|+.++.--|+-||....+...|+ -...|+++.+
T Consensus 595 YkS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred hcCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 5666789999998431 22322 2222333333333455777778887775 2357888888
Q ss_pred Ch-HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHh
Q 045012 323 SD-DDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGL 371 (576)
Q Consensus 323 ~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 371 (576)
+. ++..+.++..-. -.+...+.++++...+| +-..|+.+-.+
T Consensus 673 ~~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~--~~vgIKklL~l 715 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK--VNVGIKKLLML 715 (744)
T ss_pred CchHHHHHHHHHccC-----CCcchhHHHHHHHhccc--cchhHHHHHHH
Confidence 87 677777765421 11234456667777766 33334444433
No 137
>PRK08181 transposase; Validated
Probab=97.34 E-value=0.00048 Score=67.27 Aligned_cols=101 Identities=21% Similarity=0.117 Sum_probs=55.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
.-+.|+|++|+|||.||..+.+. .......+.|+. ..+++..+.... ...........+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~------~~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVAR------RELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHH------hCCcHHHHHHHH-----hc
Confidence 45899999999999999999873 323333345553 344555443321 112222222222 23
Q ss_pred eEEEEEeCCCCCChhhhh--hhccCCCCCCCCceEEEEecch
Q 045012 266 KFLLVLDDVWNENYNSWC--TLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
.-||||||+.......|. .+...+.....+..+||||..+
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999654332332 2333232211123588888764
No 138
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.33 E-value=0.0036 Score=67.42 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=83.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
.++-+.++|++|+|||+||+.+++... .. ++.++. .++ ..... ......+...+.....
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~----~~~----~~~~~------g~~~~~l~~~f~~a~~ 145 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG----SDF----VEMFV------GVGASRVRDLFEQAKK 145 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----HHH----HHHHh------cccHHHHHHHHHHHHh
Confidence 345688999999999999999987321 11 222221 111 11111 1122233444444445
Q ss_pred CCeEEEEEeCCCCCC----------hhhhh----hhccCCC--CCCCCceEEEEecchHHH-Hhh----hcccceecCCC
Q 045012 264 GKKFLLVLDDVWNEN----------YNSWC----TLSCPFG--AGASGSKIVVTHRNQDVA-ATM----RAVSGKTLKEL 322 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~----------~~~~~----~l~~~l~--~~~~gs~ilvTtR~~~v~-~~~----~~~~~~~l~~L 322 (576)
..+.+|+||+++... ...+. .++..+. ....+..||.||..+... ..+ .-...+.+...
T Consensus 146 ~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence 678999999995421 01111 1222221 122345566677654321 111 12356788888
Q ss_pred ChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC-hHHHHHH
Q 045012 323 SDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL-PLAAKTL 368 (576)
Q Consensus 323 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~ 368 (576)
+.++-.++|......... .. ......+++.+.|. +--|..+
T Consensus 226 d~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 226 DIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCCCHHHHHHH
Confidence 888888888776543221 11 12244678888773 3444443
No 139
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.33 E-value=0.0092 Score=61.00 Aligned_cols=201 Identities=10% Similarity=0.119 Sum_probs=119.7
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHH-HHHhcccchhccccceEEEEeCCC---CChhHHHHHHHH
Q 045012 163 KEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEIKAWTCVSED---FDVSRVTQSILK 238 (576)
Q Consensus 163 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~ 238 (576)
|.+..++|..||... .-..|.|.||-|.||+.|+ .++..+.+. ++.+.+.+- -+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 567789999999753 3469999999999999999 777764221 344433221 123334444444
Q ss_pred hhhC-----------------------CCCCCCCC-HHHHHHH-------HHH-------------------hh---cCC
Q 045012 239 SIAN-----------------------DHSKNDDD-LNLLQEK-------LKK-------------------QL---SGK 265 (576)
Q Consensus 239 ~l~~-----------------------~~~~~~~~-~~~l~~~-------l~~-------------------~l---~~k 265 (576)
++|- ....-..+ ..++... |+. +| ...
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 4331 11101112 1222221 111 01 113
Q ss_pred eEEEEEeCCCCCC---------hhhhhhhccCCCCCCCCceEEEEecchHHHHhhh------cccceecCCCChHHHHHH
Q 045012 266 KFLLVLDDVWNEN---------YNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR------AVSGKTLKELSDDDCLRV 330 (576)
Q Consensus 266 r~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~------~~~~~~l~~L~~~ea~~L 330 (576)
+-+||+||+.... ..+|...+.. .+=.+||++|-+......+. ....+.|...+++.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999985422 2345443221 23457888887755444332 346789999999999999
Q ss_pred HHHhhhCCCCC------------CC----CchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChh
Q 045012 331 LIQHSLGAGVF------------NI----RQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLN 379 (576)
Q Consensus 331 ~~~~~~~~~~~------------~~----~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~ 379 (576)
...+....... .. ...........++.+||=-.-+..+++.++...++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 98887543110 00 012344556788999999999999999999886554
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.005 Score=64.71 Aligned_cols=156 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred cccchhHHHHHHHHhcCCC------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
-|-++.+.++.+++..-.. -+-..++=|.++|++|.|||.||+++.+... +-++.++.+
T Consensus 193 GG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp-------- 257 (802)
T KOG0733|consen 193 GGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP-------- 257 (802)
T ss_pred cChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch--------
Confidence 4778888887777654211 0234567889999999999999999998432 223333322
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh------hhh-----hhhccC---CCCC-CCCceEE
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY------NSW-----CTLSCP---FGAG-ASGSKIV 299 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~------~~~-----~~l~~~---l~~~-~~gs~il 299 (576)
+|+..+ .....+.+.+.+.+.-..-++++++|+++-..+ .+. .+++.. +... ..|-.||
T Consensus 258 eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 258 EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 222222 233445566666666678899999999965321 111 112221 2111 1133333
Q ss_pred E---EecchHHHHhhh----cccceecCCCChHHHHHHHHHhhhC
Q 045012 300 V---THRNQDVAATMR----AVSGKTLKELSDDDCLRVLIQHSLG 337 (576)
Q Consensus 300 v---TtR~~~v~~~~~----~~~~~~l~~L~~~ea~~L~~~~~~~ 337 (576)
| |+|...+-..+. -.+.|.|.--++.+-.+++...+-+
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 3 555544333322 2356777777777666777665543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.30 E-value=0.0025 Score=71.92 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|-+..++.+.+.+..... .+.....++.++|++|+|||+||+.++... +...+.++.+.-.+... +.
T Consensus 457 ~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~----~~ 527 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT----VS 527 (731)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc----HH
Confidence 7888888888888764311 012344578999999999999999998732 22334454443222111 11
Q ss_pred HhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCC
Q 045012 238 KSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGA 291 (576)
Q Consensus 238 ~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 291 (576)
..++.+... .......+.+.++ .....+|+||+++...+..+..+...+..
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 112211110 1122223333333 13346999999988777777777666544
No 142
>PRK12377 putative replication protein; Provisional
Probab=97.29 E-value=0.00072 Score=65.22 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=56.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
..+.|+|++|+|||+||..+++. .......++++++ .+++..+-..... .......... + .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~------~~l~~~l~~~~~~-----~~~~~~~l~~----l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV------PDVMSRLHESYDN-----GQSGEKFLQE----L-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH------HHHHHHHHHHHhc-----cchHHHHHHH----h-cC
Confidence 57899999999999999999984 3333334556544 3444444433321 1112222222 2 35
Q ss_pred eEEEEEeCCCCCChhhhhh--hccCCCCC-CCCceEEEEecc
Q 045012 266 KFLLVLDDVWNENYNSWCT--LSCPFGAG-ASGSKIVVTHRN 304 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 304 (576)
.-||||||+.......|.. +...+... ...-.+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5699999995543334432 22222221 123347788764
No 143
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00013 Score=66.22 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=26.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchh-ccccceEE
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQ-RHFEIKAW 220 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 220 (576)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854433 34666665
No 144
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.28 E-value=0.00033 Score=64.19 Aligned_cols=102 Identities=22% Similarity=0.235 Sum_probs=51.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
..-+.|+|++|+|||.||..+.+. ...+-..+.|++ ..+++..+ .... ...........+ .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l----~~~~--~~~~~~~~~~~l----~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDEL----KQSR--SDGSYEELLKRL----K- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHH----HCCH--CCTTHCHHHHHH----H-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceeccc----cccc--cccchhhhcCcc----c-
Confidence 356999999999999999999874 222223345554 33444443 3222 112222333332 2
Q ss_pred CeEEEEEeCCCCCChhhhhh--hccCCCCCCCCceEEEEecch
Q 045012 265 KKFLLVLDDVWNENYNSWCT--LSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~ilvTtR~~ 305 (576)
+.=||||||+-......|.. +...+........+||||...
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 23578899997655444432 211111111122578888753
No 145
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.25 E-value=0.024 Score=53.06 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=63.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+...+.|++-...-. .+.+.--|.+||.-|+|||+|++++.+. ....... -|.+.+.
T Consensus 63 ~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~-------------- 122 (287)
T COG2607 63 VGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE-------------- 122 (287)
T ss_pred hCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH--------------
Confidence 788888888776544322 1234456889999999999999999983 3333222 2222211
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCC
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGA 291 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~ 291 (576)
+..++..+.+.|+.. .+||+|+.||+.- .....+..+...+..
T Consensus 123 ------dl~~Lp~l~~~Lr~~--~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ------DLATLPDLVELLRAR--PEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ------HHhhHHHHHHHHhcC--CceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 223344445555433 6899999999843 223456666666553
No 146
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.25 E-value=0.00088 Score=64.16 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSR 231 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 231 (576)
..-.++.|+|++|+|||++|.+++.. ....-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 45579999999999999999998873 33334667888876 555443
No 147
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0048 Score=60.98 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=96.0
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
-|-++.+++|.+...-+-. -+-.+++=|.++|++|.|||-||++|++. ....| +.+..
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg-------- 218 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG-------- 218 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc--------
Confidence 3667777777666532210 03466788999999999999999999983 33333 32222
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCCC--------------hhhhhhhccCCCCC--CCCc
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNEN--------------YNSWCTLSCPFGAG--ASGS 296 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs 296 (576)
.++.+..-+.. ..+...+.+.- ...+++|++|.++... +...-+++..+... ....
T Consensus 219 SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 219 SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 12222222211 12222232222 3568999999985421 12233344444332 2467
Q ss_pred eEEEEecchHHHHh-----hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh----HHHHH
Q 045012 297 KIVVTHRNQDVAAT-----MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP----LAAKT 367 (576)
Q Consensus 297 ~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P----Lai~~ 367 (576)
+||..|...++... -.-...+++..-+.+.-.++|.-+.-.... ...-++ +.|++.|.|.- -|+.+
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd~----e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVDL----ELLARLTEGFSGADLKAICT 366 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcCH----HHHHHhcCCCchHHHHHHHH
Confidence 88887765544321 112355666644444445566555433221 222233 34555665543 34444
Q ss_pred HHHhh
Q 045012 368 LGGLL 372 (576)
Q Consensus 368 ~~~~L 372 (576)
=|+++
T Consensus 367 EAGm~ 371 (406)
T COG1222 367 EAGMF 371 (406)
T ss_pred HHhHH
Confidence 45544
No 148
>PRK06526 transposase; Provisional
Probab=97.23 E-value=0.00042 Score=67.26 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=52.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.|+|++|+|||+||..+.+... ...+. +.|+ +..+++..+.... . .... ...+... .
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~----~--~~~~---~~~l~~l--~ 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAH----H--AGRL---QAELVKL--G 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHH----h--cCcH---HHHHHHh--c
Confidence 35689999999999999999886322 12222 2332 3334444443321 1 1111 1223322 2
Q ss_pred CeEEEEEeCCCCCChhhhh--hhccCCCCC-CCCceEEEEecch
Q 045012 265 KKFLLVLDDVWNENYNSWC--TLSCPFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 305 (576)
+.-|||+||+.......+. .+...+... ..+ .+|+||..+
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 3468999999754322222 222222111 123 488888764
No 149
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.21 E-value=0.0013 Score=65.77 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=69.5
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
+|..-.....+++..-.. ....+-+.|+|..|+|||.||..+++.. ...-..+.++++ ..++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 344444445555543221 1234678999999999999999999853 232233455544 345555554442
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhh--hccCCCC-C-CCCceEEEEecc
Q 045012 242 NDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCT--LSCPFGA-G-ASGSKIVVTHRN 304 (576)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~gs~ilvTtR~ 304 (576)
. .+.... +.. + .+-=||||||+..+....|.. +...+.. . ..+-.+|+||..
T Consensus 205 ~------~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D------GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c------CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 122222 222 2 245689999998766667753 4443321 1 234568888874
No 150
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.21 E-value=0.00065 Score=64.66 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=28.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEe
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV 223 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 223 (576)
-.++|+|..|.|||||+..+.. .....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 4678999999999999999987 35667876666643
No 151
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.00065 Score=63.12 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=63.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC-CCCCHHHHHHHHHHhhcC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK-NDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l~~ 264 (576)
.++.|+|+.|.||||++..+... ...+...++.+ ...++.......++++++..... .......+...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888773 32332233333 12222223344456666533221 12334455555554 334
Q ss_pred CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 265 KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
+.-+||+|.+...+.++...+...+. ..|..|++|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 55689999996543332333333322 3578899999874
No 152
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0023 Score=67.51 Aligned_cols=187 Identities=17% Similarity=0.183 Sum_probs=112.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|-+.-...|...+... .-...-...|+-|+||||+|+.++....-.. | ....+++.-...+.|...-
T Consensus 19 vGQe~v~~~L~nal~~~-----ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 19 VGQEHVVKTLSNALENG-----RIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGS 86 (515)
T ss_pred cccHHHHHHHHHHHHhC-----cchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCC
Confidence 78888888888888654 3345667899999999999998876321111 0 1112222222223333220
Q ss_pred -------hCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHH-Hh
Q 045012 241 -------ANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVA-AT 310 (576)
Q Consensus 241 -------~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~-~~ 310 (576)
........++..++.+.+.-. ..++.=+.++|.|+-.+...|..++..+-........|+.|.+ ..+. ..
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000000122333333332221 1345558999999888888999998888765556666665554 3333 23
Q ss_pred hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH
Q 045012 311 MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL 363 (576)
Q Consensus 311 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL 363 (576)
.+....|.++.++.++-...+...+-..+... ..+....|++..+|..-
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCChh
Confidence 34568899999999999888877765544322 23556667777777544
No 153
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0066 Score=61.22 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHhh-hcccceecCCCChHHHHHHHHHh
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-RAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
+++-++|+|++...+...-..+...+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444566798888776666666655543334566777776643 33332 24578899999999998888654
No 154
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.0021 Score=65.00 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=63.1
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc-cccc-eEEEEeCC-CCChhHHHHHHHHhhhC
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-HFEI-KAWTCVSE-DFDVSRVTQSILKSIAN 242 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~-~~~~~~~~~~il~~l~~ 242 (576)
-..++++.+..- +.-.-+.|+|.+|+|||||++.+.+. +.. +-+. .+|+.+.+ ..++.++++.+...+..
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 344577777532 23356699999999999999998874 222 2234 35666664 44678888888887765
Q ss_pred CCCCCCCCHH-HHH---HHHHHhh--cCCeEEEEEeCCC
Q 045012 243 DHSKNDDDLN-LLQ---EKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 243 ~~~~~~~~~~-~l~---~~l~~~l--~~kr~LlVlDdv~ 275 (576)
.......... ... ....+.+ .+++.+||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 4421111110 111 1111122 5899999999994
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.18 E-value=0.00098 Score=75.88 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=74.4
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+.+.+..... .+..+..++.++|++|+|||.||+.+... .-......+-++++.-.+. ..+.
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~----~~~~ 642 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA----HTVS 642 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----hhhc
Confidence 8999999999888854311 12344568899999999999999888763 2111111122222211110 0111
Q ss_pred HhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCC-----------CCceEEEEecc
Q 045012 238 KSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGA-----------SGSKIVVTHRN 304 (576)
Q Consensus 238 ~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 304 (576)
.-++.+... .......+.+.+++ ....+|+||++...++..++.+...+..+. ..+-||+||..
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 112221110 11112233344432 455799999998877777777666555442 35567777764
No 156
>PRK09183 transposase/IS protein; Provisional
Probab=97.17 E-value=0.00081 Score=65.65 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 56889999999999999999763
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.0037 Score=71.41 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=72.6
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+...+..... .++.+..++.++|++|+|||+||+.+.+.. ...-...+.++.+.-.. .. ..
T Consensus 571 iGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~~----~~ 643 (857)
T PRK10865 571 IGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-KH----SV 643 (857)
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-hh----hH
Confidence 7999888888888764321 012334578999999999999999988631 11112223333332111 11 12
Q ss_pred HhhhCCCCC-CC-CCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC-----------CCCceEEEEecc
Q 045012 238 KSIANDHSK-ND-DDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG-----------ASGSKIVVTHRN 304 (576)
Q Consensus 238 ~~l~~~~~~-~~-~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 304 (576)
..+.+..+. .. .....+...++ ....-+|+||++...+...+..+...+..+ -..+.||+||..
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 222222111 11 11122223222 122369999999877777777776655432 122347778875
No 158
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.15 E-value=0.0012 Score=62.33 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
+.-.++.|+|++|+|||+++.+++.. .......++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998763 333446788998875 55554443
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0025 Score=64.63 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc-------------------cccceEEE
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-------------------HFEIKAWT 221 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv 221 (576)
+|-+....++..+..... .....+.++|++|+||||+|..+.+..--.. .++....+
T Consensus 4 ~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 4 VPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred ccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 455666677777776431 2344699999999999999988887421101 11233333
Q ss_pred EeCCCCC---hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceE
Q 045012 222 CVSEDFD---VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKI 298 (576)
Q Consensus 222 ~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 298 (576)
+.++... ..+..+++.+....... .++.-++++|+++..+...-..+...+......+.+
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 3333222 12222222222221110 356779999999887766666666666655667788
Q ss_pred EEEecch-HHHHhh-hcccceecCCCChH
Q 045012 299 VVTHRNQ-DVAATM-RAVSGKTLKELSDD 325 (576)
Q Consensus 299 lvTtR~~-~v~~~~-~~~~~~~l~~L~~~ 325 (576)
|++|... .+...+ .....+.+.+.+..
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHH
Confidence 8877743 232222 23356666663333
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.14 E-value=0.0018 Score=60.29 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=65.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC----CCC-----Chh--
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS----EDF-----DVS-- 230 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~-----~~~-- 230 (576)
.+..+....++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.-. +.. +..
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 345566677777763 3699999999999999998777654444677777765321 111 000
Q ss_pred -----HHHHHHHHhhhCCCCCCCCCHHHHHHHH------HHhhcCC---eEEEEEeCCCCCChhhhhhhccCCCCCCCCc
Q 045012 231 -----RVTQSILKSIANDHSKNDDDLNLLQEKL------KKQLSGK---KFLLVLDDVWNENYNSWCTLSCPFGAGASGS 296 (576)
Q Consensus 231 -----~~~~~il~~l~~~~~~~~~~~~~l~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 296 (576)
.-+.+.+..+. .....+.+.+.= -.+++|+ ..+||+|++++.+..++..+...+ +.||
T Consensus 76 ~~p~~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~s 147 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGS 147 (205)
T ss_dssp --TTTHHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-
T ss_pred HHHHHHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCc
Confidence 11112222221 112222222110 1233443 469999999998888888776654 4689
Q ss_pred eEEEEecch
Q 045012 297 KIVVTHRNQ 305 (576)
Q Consensus 297 ~ilvTtR~~ 305 (576)
++|++--..
T Consensus 148 kii~~GD~~ 156 (205)
T PF02562_consen 148 KIIITGDPS 156 (205)
T ss_dssp EEEEEE---
T ss_pred EEEEecCce
Confidence 999987643
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.01 Score=65.41 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=77.2
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc---cceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 234 (576)
+|-+..+..+.+.+..... .+..+..+....||.|||||.||+.+... -| +..+-++.|.-. . +
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~-E----k 563 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYM-E----K 563 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHH-H----H
Confidence 7888888888888765422 23456678888999999999999988762 23 223333333211 1 1
Q ss_pred HHHHhhhCCCCC--CCCCHHHHHHHHHHhhcCCeE-EEEEeCCCCCChhhhhhhccCCCCCC-----------CCceEEE
Q 045012 235 SILKSIANDHSK--NDDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWCTLSCPFGAGA-----------SGSKIVV 300 (576)
Q Consensus 235 ~il~~l~~~~~~--~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilv 300 (576)
.-.+.|-+.++. .-..-.. |-+..+.+|| +|.||.+....++-.+.++..|..+. .++-||+
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~----LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQ----LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHHHHHhCCCCCCceeccccc----hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 112233332221 1122223 3444556777 88899998877777777776666541 2345667
Q ss_pred Eecc
Q 045012 301 THRN 304 (576)
Q Consensus 301 TtR~ 304 (576)
||.-
T Consensus 640 TSN~ 643 (786)
T COG0542 640 TSNA 643 (786)
T ss_pred eccc
Confidence 7753
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.11 E-value=0.0023 Score=73.33 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=75.5
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+...+..... .+.....++.++|++|+|||++|+.+... ....-...+.++.+.-.+. .....+
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~-~~~~~l- 643 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEK-HSVARL- 643 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhccc-chHHHh-
Confidence 8999999999998875321 01233567889999999999999999863 2111122233333332221 111111
Q ss_pred HhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCC-----------CCceEEEEecc
Q 045012 238 KSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGA-----------SGSKIVVTHRN 304 (576)
Q Consensus 238 ~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 304 (576)
++.+... .......+...++. ....+|+||++....+..+..+...+..+. ..+-||+||..
T Consensus 644 --~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 644 --IGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred --cCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 1211110 11112233333332 233589999998888777777776664431 23447777764
No 163
>PRK04132 replication factor C small subunit; Provisional
Probab=97.07 E-value=0.0079 Score=67.56 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred cCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEE
Q 045012 193 LGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVL 271 (576)
Q Consensus 193 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVl 271 (576)
|.++||||+|..++++.- .+.+. ..+-++.++..+.. ..++++..+....+ . -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-~--------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKP-I--------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-c--------------CCCCCEEEEE
Confidence 789999999999998421 12221 23445555543333 34444443322111 0 0124579999
Q ss_pred eCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHH
Q 045012 272 DDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKE 349 (576)
Q Consensus 272 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~ 349 (576)
|+++..+......++..+-.....+++|++|.+. .+...+ +....+.+.+++.++-...+...+...+. .. ..+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CHH
Confidence 9999988777777777766544566666665553 332222 24578999999999998888766543221 11 135
Q ss_pred HHHHHHHhcCCChHHHHHHHH
Q 045012 350 VAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 350 ~~~~I~~~c~G~PLai~~~~~ 370 (576)
....|++.|+|.+-.+..+..
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 778899999998865544433
No 164
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0018 Score=62.41 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhcc----ccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--------CCCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--------NDDD 250 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--------~~~~ 250 (576)
..-.++.|+|++|+|||+|+.+++........ -..++|++....++..++ .++++..+..... ...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 45689999999999999999998743222221 357889988877765443 3344433321110 1112
Q ss_pred HH---HHHHHHHHhh-cC-CeEEEEEeCCC
Q 045012 251 LN---LLQEKLKKQL-SG-KKFLLVLDDVW 275 (576)
Q Consensus 251 ~~---~l~~~l~~~l-~~-kr~LlVlDdv~ 275 (576)
.. .....+...+ +. +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 22 2233333333 23 56788888873
No 165
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0023 Score=61.60 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=56.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.++|.+|+|||+||..+++.. ...-..+++++ ..+++..+-..... .......+.. .+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~~l~----~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQLLN----DLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHHHHH----Hhc-
Confidence 3578899999999999999999843 22223445553 34444444333321 1122222222 233
Q ss_pred CeEEEEEeCCCCCChhhhhh-hccCCCCC--CCCceEEEEecc
Q 045012 265 KKFLLVLDDVWNENYNSWCT-LSCPFGAG--ASGSKIVVTHRN 304 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~-l~~~l~~~--~~gs~ilvTtR~ 304 (576)
+.=||||||+.......|.. +...+... ...-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34588899997765555653 22222111 123457777764
No 166
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.04 E-value=0.016 Score=62.08 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=108.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccc---hh---ccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDR---VQ---RHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
-+|+.|..+|...+...-. .....+.+-|.|-+|+|||..+..|.+... .+ ..|+ .+.++.-.-..+.+++.
T Consensus 399 pcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 399 PCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred cchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 5999999999998865543 123345999999999999999999988432 11 2232 23344444456889999
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhc-----CCeEEEEEeCCCCCChhhhhhhccCCCC-CCCCceEEEEecch--H
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLS-----GKKFLLVLDDVWNENYNSWCTLSCPFGA-GASGSKIVVTHRNQ--D 306 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~--~ 306 (576)
.|...+.+... ......+.|..+.. .+++++++|+++..-...-+-+...|.+ ..++|+++|-+=.. +
T Consensus 477 ~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmd 552 (767)
T KOG1514|consen 477 KIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMD 552 (767)
T ss_pred HHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccccc
Confidence 99999987653 22233334444432 3568888898743210011122233332 34677776644211 1
Q ss_pred HHH-hhh-------cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHH
Q 045012 307 VAA-TMR-------AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTL 368 (576)
Q Consensus 307 v~~-~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~ 368 (576)
... .+. ....+...|-+.++-.++...+..+... -.+...+-++++|+.-.|-.-.|+.+.
T Consensus 553 lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 553 LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHH
Confidence 110 000 1234555666666666655555433211 111223333444444444444444433
No 167
>PRK06921 hypothetical protein; Provisional
Probab=97.02 E-value=0.0018 Score=63.49 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=27.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhcc-ccceEEEEe
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-FEIKAWTCV 223 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 223 (576)
....+.++|.+|+|||.||..+++. +... ...+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 3467899999999999999999984 3332 334556653
No 168
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.02 E-value=0.027 Score=57.19 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=32.9
Q ss_pred chhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 164 EKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 164 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
+.-.+.|.+.+.... ...+.+|+|.|.=|+|||++.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566777776542 2678999999999999999999998743
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.96 E-value=0.00086 Score=67.46 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=40.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
.+|-++.++++++++.......+...+++.|+|++|+||||||+.+.+..
T Consensus 53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999876543223456899999999999999999998753
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.96 E-value=0.0062 Score=69.65 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=73.8
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|-+..++.|...+..... .++.+...+.++|++|+|||+||+.+.+. .-..-...+-++.+.-.+...+ ..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~-~~l- 587 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV-SKL- 587 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-HHh-
Confidence 7888889999887753211 12233456789999999999999998862 1111122233333332221111 111
Q ss_pred HhhhCCCC-CCCCCHHHHHHHHHHhhcCCe-EEEEEeCCCCCChhhhhhhccCCCCC-----------CCCceEEEEecc
Q 045012 238 KSIANDHS-KNDDDLNLLQEKLKKQLSGKK-FLLVLDDVWNENYNSWCTLSCPFGAG-----------ASGSKIVVTHRN 304 (576)
Q Consensus 238 ~~l~~~~~-~~~~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~ 304 (576)
++.+.. ........+.+ .+..++ .+++||+++..++..+..+...+..+ ...+.+|+||..
T Consensus 588 --~g~~~gyvg~~~~~~l~~----~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 588 --IGSPPGYVGYNEGGQLTE----AVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred --cCCCCcccCcCccchHHH----HHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 121110 01112223333 333444 58999999888777777777666543 134556777764
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0029 Score=69.58 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=81.0
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-----ceEEEEeCCCCChhHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-----IKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~ 233 (576)
|.+||++|++++++.|..... + --.++|.+|||||+++.-++... +.+.-+ ..++ ++
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----N--NPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~-sL---------- 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----N--NPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIY-SL---------- 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----C--CCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEE-Ee----------
Confidence 349999999999999976532 1 22478999999999987776621 111111 1111 00
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCCC----h----hhhhhhccCCCCCCCCceEE-EEec
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNEN----Y----NSWCTLSCPFGAGASGSKIV-VTHR 303 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~----~----~~~~~l~~~l~~~~~gs~il-vTtR 303 (576)
++..-+.+.. --.+.++....+.+.+ +.++.+|++|.++..- . .+-..++.|....+. -++| .||-
T Consensus 233 -D~g~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~ 308 (786)
T COG0542 233 -DLGSLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTL 308 (786)
T ss_pred -cHHHHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccH
Confidence 1111111111 1233343333333333 4558999999986521 0 111122222222222 2344 4554
Q ss_pred chHHHHhh-------hcccceecCCCChHHHHHHHHHh
Q 045012 304 NQDVAATM-------RAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 304 ~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
++ .-..+ .....+.+...+.+++..+++-.
T Consensus 309 ~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 33 22221 24578889999999998887643
No 172
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.0056 Score=65.03 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=71.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
..++-|.++|++|+|||.+|+.+.+.. .-.| +-+..+ .+.... ...+...+.+.+...-
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~----------~l~~~~------vGese~~l~~~f~~A~ 315 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVG----------KLFGGI------VGESESRMRQMIRIAE 315 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhH----------Hhcccc------cChHHHHHHHHHHHHH
Confidence 346778999999999999999998732 1111 111111 111111 1112223333333333
Q ss_pred cCCeEEEEEeCCCCCCh--------hh----hhhhccCCCCCCCCceEEEEecchHH-HHhh----hcccceecCCCChH
Q 045012 263 SGKKFLLVLDDVWNENY--------NS----WCTLSCPFGAGASGSKIVVTHRNQDV-AATM----RAVSGKTLKELSDD 325 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~--------~~----~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~~----~~~~~~~l~~L~~~ 325 (576)
...+++|++|+++..-. .. ...+...+.....+..||.||..... ...+ .-...+.+..-+.+
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 45789999999964210 00 01122222222334455667765432 1111 22356778888888
Q ss_pred HHHHHHHHhhhC
Q 045012 326 DCLRVLIQHSLG 337 (576)
Q Consensus 326 ea~~L~~~~~~~ 337 (576)
+-.++|..+...
T Consensus 396 eR~~Il~~~l~~ 407 (489)
T CHL00195 396 EREKIFKIHLQK 407 (489)
T ss_pred HHHHHHHHHHhh
Confidence 888888877644
No 173
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.93 E-value=0.0035 Score=56.78 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~ 239 (576)
+|....+.++.+.+.... ....-|.|+|..|+||+.+|+.+++.-. .....|+.+.- ..+...+-..++-.
T Consensus 2 iG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~s~----r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNNSP----RKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp S--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHCST----TTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred EeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHhhh----cccCCeEEEehhhhhcchhhhhhhcc
Confidence 577777888887776543 2225567999999999999999987321 11223444432 22333333344433
Q ss_pred hhCCCCCCCC-CHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCC------C-----CCCceEEEEecch
Q 045012 240 IANDHSKNDD-DLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGA------G-----ASGSKIVVTHRNQ 305 (576)
Q Consensus 240 l~~~~~~~~~-~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------~-----~~gs~ilvTtR~~ 305 (576)
-......... ... .+.. -..=.|+||++.......-..+...+.. + ....|||.||..+
T Consensus 74 ~~~~~~~~~~~~~G----~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC----ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 2221110111 111 1111 2344788999987654443334333221 1 1257888888754
No 174
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.93 E-value=0.0055 Score=58.66 Aligned_cols=90 Identities=19% Similarity=0.107 Sum_probs=55.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccc------cceEEEEeCCCCChhHHHHHHHHhhhCCCC--------CCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF------EIKAWTCVSEDFDVSRVTQSILKSIANDHS--------KND 248 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~ 248 (576)
..-.++.|+|++|+|||+|+.+++... .... ..++|+.....++...+ ..+.+....... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeC
Confidence 456899999999999999999887532 1222 45688888776665443 333333222110 022
Q ss_pred CCHHHHHHHHHHhhc----CCeEEEEEeCCC
Q 045012 249 DDLNLLQEKLKKQLS----GKKFLLVLDDVW 275 (576)
Q Consensus 249 ~~~~~l~~~l~~~l~----~kr~LlVlDdv~ 275 (576)
.+.+++...+..... .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 345555555555442 355689999984
No 175
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.013 Score=62.77 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=64.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.++-+++|++++.-....++-+-++++.+|++|||||++|+.++. .....|- -+++++-.|..++-
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIk------- 481 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIK------- 481 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhc-------
Confidence 89999999999998765444456779999999999999999999987 3333332 23455544443321
Q ss_pred hCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 241 ANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 241 ~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
+.... -..-...+++.|+.. +...-|+.||.|+.
T Consensus 482 -GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 -GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred -ccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 11100 112223445555544 33456778888854
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00041 Score=60.89 Aligned_cols=86 Identities=22% Similarity=0.132 Sum_probs=44.5
Q ss_pred EEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeE
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKF 267 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~ 267 (576)
|.|+|++|+|||+||+.++.. ... ...-+.++...+..+++... .............+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~----~~~~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSY----DPSNGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEE----ET-TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeee----eecccccccccccccccc-----ccee
Confidence 679999999999999999873 211 12234566666655444322 111100000000000011 1789
Q ss_pred EEEEeCCCCCChhhhhhhcc
Q 045012 268 LLVLDDVWNENYNSWCTLSC 287 (576)
Q Consensus 268 LlVlDdv~~~~~~~~~~l~~ 287 (576)
++|||++...+...+..+..
T Consensus 68 il~lDEin~a~~~v~~~L~~ 87 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLS 87 (139)
T ss_dssp EEEESSCGG--HHHHHTTHH
T ss_pred EEEECCcccCCHHHHHHHHH
Confidence 99999997655444444433
No 177
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0032 Score=58.66 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=52.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC-CCCChhHHHHHHHHhhhCCCCC--CC-CCHHHHHHHHHH
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-EDFDVSRVTQSILKSIANDHSK--ND-DDLNLLQEKLKK 260 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~--~~-~~~~~l~~~l~~ 260 (576)
++++.++|+.|+||||.+..++.....+ -..+..++.. ......+-++...+.++.+... .. ++.+.+.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999998888744333 3345556553 2334556677778877754211 12 223333344444
Q ss_pred hhcCCeEEEEEeCCC
Q 045012 261 QLSGKKFLLVLDDVW 275 (576)
Q Consensus 261 ~l~~kr~LlVlDdv~ 275 (576)
.-..+.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 333334477778764
No 178
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.88 E-value=0.006 Score=69.03 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|.+..+++|.+++...-. -+-...+-+.|+|++|+|||+||+.+++. .... ++.++.. ++
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~-----~i~i~~~----~i- 248 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAY-----FISINGP----EI- 248 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCe-----EEEEecH----HH-
Confidence 6888888888777642100 01134567889999999999999999873 2222 2222211 11
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhccCCCCC-CCCceEEE-
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLSCPFGAG-ASGSKIVV- 300 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~ilv- 300 (576)
.... .......+...+.......+.+|+||+++.... .....+...+... ..+..++|
T Consensus 249 ---~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 249 ---MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred ---hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 1110 111122333444444456778999999854210 0111222222211 12333444
Q ss_pred EecchH-HHHhhh----cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 301 THRNQD-VAATMR----AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 301 TtR~~~-v~~~~~----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
||.... +...+. -...+.+...+.++-.+++....-.... .. ......+++.+.|..
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~----d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE----DVDLDKLAEVTHGFV 381 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc----ccCHHHHHHhCCCCC
Confidence 554332 111111 1245677777888888888754322111 11 122456777777764
No 179
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0025 Score=58.45 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=28.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEE
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWT 221 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 221 (576)
....+|.++|++|+||||+|+.+++ .....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 4567999999999999999999987 344445555554
No 180
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.86 E-value=0.0022 Score=64.08 Aligned_cols=86 Identities=23% Similarity=0.167 Sum_probs=55.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC----CCCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS----KNDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~l~~~l 258 (576)
+.-+++-|+|++|+||||||.+++.. ....-...+|++..+.+++. .++.++.... ..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999998763 33334567788877666643 2333332211 0334555565655
Q ss_pred HHhhc-CCeEEEEEeCCC
Q 045012 259 KKQLS-GKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l~-~kr~LlVlDdv~ 275 (576)
...++ +..-+||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456789999973
No 181
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.85 E-value=0.0065 Score=65.70 Aligned_cols=42 Identities=31% Similarity=0.309 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.+..++.+...+.. ....-+.|+|++|+|||++|+.+++
T Consensus 67 iiGqs~~i~~l~~al~~------~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 67 IIGQEEGIKALKAALCG------PNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred eeCcHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHH
Confidence 38999989888877643 2335568999999999999999976
No 182
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.00088 Score=57.13 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 183
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.014 Score=64.06 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=98.3
Q ss_pred hhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 165 KDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.|+.++++.|..+.. -+..-++=+.++|++|+|||-||++++-... +-|++++.. +.++.+.
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS--------EFvE~~~ 385 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS--------EFVEMFV 385 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH--------HHHHHhc
Confidence 467777777765421 1234567889999999999999999997322 334555432 2222222
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC---------------hhhhhhhccCCCCCCC--CceEEEEecc
Q 045012 242 NDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN---------------YNSWCTLSCPFGAGAS--GSKIVVTHRN 304 (576)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~--gs~ilvTtR~ 304 (576)
+.. .....+.....=...+++|.+|+++... ....++++..+..... +.-++-+|..
T Consensus 386 g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr 459 (774)
T KOG0731|consen 386 GVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNR 459 (774)
T ss_pred ccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCC
Confidence 221 1112222222334568899999885421 1223333333332222 2233335555
Q ss_pred hHHHHh--h---hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 305 QDVAAT--M---RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 305 ~~v~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
.++... + .-...+.+..-+...-.++|..++-.... ..+..++.+ |+...-|.+=|.
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 443221 1 12356778888888888889888754332 134456666 888888877554
No 184
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0038 Score=59.41 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=31.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD 228 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 228 (576)
..-.++.|+|.+|+||||++.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999998863 223334567777654443
No 185
>PRK09354 recA recombinase A; Provisional
Probab=96.78 E-value=0.0032 Score=63.46 Aligned_cols=86 Identities=23% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
+.-+++-|+|++|+|||||+.+++.. ....-...+|+...+.+++. .+++++..... .+.+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999988763 33344567888887776652 34444432110 334455555555
Q ss_pred HHhhc-CCeEEEEEeCCC
Q 045012 259 KKQLS-GKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l~-~kr~LlVlDdv~ 275 (576)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456799999984
No 186
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.77 E-value=0.0032 Score=62.84 Aligned_cols=86 Identities=21% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++..... .+...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999888763 33334556788776655543 24444332110 334555555555
Q ss_pred HHhhc-CCeEEEEEeCCC
Q 045012 259 KKQLS-GKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l~-~kr~LlVlDdv~ 275 (576)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999984
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.75 E-value=0.0026 Score=64.13 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=54.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
..+.++|++|+|||.||..+++. ....-..++++++ .+++..+...-.. ...+.....+. +. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~------~~l~~~l~~~~~~----~~~~~~~~~~~----l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA------DELIEILREIRFN----NDKELEEVYDL----LI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH------HHHHHHHHHHHhc----cchhHHHHHHH----hc-c
Confidence 67999999999999999999984 3233234555543 3333333321111 11111111122 22 2
Q ss_pred eEEEEEeCCCCCChhhhh--hhccCCCCC-CCCceEEEEecch
Q 045012 266 KFLLVLDDVWNENYNSWC--TLSCPFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 305 (576)
-=||||||+.......|. .+...+... ..+..+||||...
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 248999999665433442 233222211 2245688888753
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.75 E-value=0.0084 Score=67.85 Aligned_cols=176 Identities=16% Similarity=0.149 Sum_probs=90.1
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|.+..++.|.+.+..+-. -+-..++-+.++|++|+|||+||+.+++. ....| +.+...
T Consensus 456 ~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~------- 521 (733)
T TIGR01243 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP------- 521 (733)
T ss_pred ccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-------
Confidence 4666666666665432100 01234566889999999999999999983 22222 222211
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC--------h----hhhhhhccCCCC--CCCCceEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN--------Y----NSWCTLSCPFGA--GASGSKIV 299 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs~il 299 (576)
+++.... ......+...+...-...+.+|+||+++... . .....++..+.. ...+..||
T Consensus 522 -~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 522 -EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred -HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 1111111 1122233333444445678999999985420 0 011122222221 12344566
Q ss_pred EEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 300 VTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 300 vTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
.||..+.... .+ .-...+.+...+.++-.++|..+...... ....+ ...+++.|.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 6776554321 11 12356778888888888888655432211 11112 355667777653
No 189
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.73 E-value=0.006 Score=60.44 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=47.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
..+++.|+|++|+||||++..+.........-..+..++.. .+. ..+.+......++.+.. ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D-~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD-TYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC-ccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 45799999999999999999888643322111234444433 222 22333333344443332 233444555555543
Q ss_pred hcCCeEEEEEeCC
Q 045012 262 LSGKKFLLVLDDV 274 (576)
Q Consensus 262 l~~kr~LlVlDdv 274 (576)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 346777753
No 190
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.014 Score=59.47 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=49.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLKK 260 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~ 260 (576)
.++++|+|+|++|+||||++..++... ...-..+..+.. +.+. ..+-++...+.++.+.. ...+...+.+.+..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~a-Dt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITT-DHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEec-CCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHH
Confidence 346899999999999999999988632 222122334443 2332 23333444444443322 23445555555544
Q ss_pred hhcC-CeEEEEEeCCCC
Q 045012 261 QLSG-KKFLLVLDDVWN 276 (576)
Q Consensus 261 ~l~~-kr~LlVlDdv~~ 276 (576)
.-.. +.=+|++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 4321 234777887744
No 191
>PRK07261 topology modulation protein; Provisional
Probab=96.69 E-value=0.003 Score=57.58 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=39.7
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchh-ccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
.|.|+|++|+||||||+.+....... -+.+...|-.. . ...+.++....+...+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------W-QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------c-ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999987632211 12333444111 0 1223445666666677666
Q ss_pred eEEEEEeCCC
Q 045012 266 KFLLVLDDVW 275 (576)
Q Consensus 266 r~LlVlDdv~ 275 (576)
+ .|+|+..
T Consensus 60 ~--wIidg~~ 67 (171)
T PRK07261 60 D--WIIDGNY 67 (171)
T ss_pred C--EEEcCcc
Confidence 6 5778773
No 192
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.68 E-value=0.0044 Score=60.38 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=40.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
....+.=|+|++|+|||.|+.+++-...... .=..++|++-...|+..++. +|++..
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3457899999999999999988764322222 12358899998888887664 456554
No 193
>PRK06696 uridine kinase; Validated
Probab=96.66 E-value=0.0021 Score=61.39 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=34.8
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.+-+++|.+.+.... .+.+.+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35666777777776532 356789999999999999999999873
No 194
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0065 Score=62.50 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++.++|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998863
No 195
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.64 E-value=0.0018 Score=56.77 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=60.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh-ccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ-RHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
||+-..++++.+.+..-. ....-|.|+|.+|+||+++|+.++...... ..|.. +. .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~-----~~----~---------- 57 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV-----ID----C---------- 57 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC-----CC----H----------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE-----ec----h----------
Confidence 466666677766665432 233567899999999999999888642211 11111 00 0
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC-CCCceEEEEecch
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~ 305 (576)
...+ .+.+.. .+.-.|+|+|++.-+......+...+... ....|+|.||..+
T Consensus 58 -------~~~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 58 -------ASLP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------HCTC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------hhCc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 0001 111111 14556789999887665655665555432 4678999999864
No 196
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.59 E-value=0.0096 Score=53.32 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF 227 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 227 (576)
++.|+|++|+|||+++..+... ....-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcch
Confidence 3689999999999999999873 22233456677665543
No 197
>PRK13695 putative NTPase; Provisional
Probab=96.58 E-value=0.0033 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 198
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0072 Score=58.76 Aligned_cols=82 Identities=24% Similarity=0.251 Sum_probs=49.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
...-+.++|.+|+|||.||.++.+. +...-..+.+++ ..+++.++-...... .....|...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~---------~~~~~l~~~l- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEG---------RLEEKLLREL- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcC---------chHHHHHHHh-
Confidence 3467899999999999999999985 333323344553 445555555554431 1112222222
Q ss_pred CCeEEEEEeCCCCCChhhhh
Q 045012 264 GKKFLLVLDDVWNENYNSWC 283 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~ 283 (576)
.+-=||||||+-......|.
T Consensus 166 ~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 166 KKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred hcCCEEEEecccCccCCHHH
Confidence 13348999999765444554
No 199
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.56 E-value=0.02 Score=56.16 Aligned_cols=176 Identities=22% Similarity=0.160 Sum_probs=95.6
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCCh-hHHHH
Q 045012 156 KNVISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDV-SRVTQ 234 (576)
Q Consensus 156 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~ 234 (576)
+..+.+|-.++..++-.++.+... -+...-+.|+||.|.|||+|......+ .++.-+..+-|...+.... .-.++
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHH
Confidence 334458888999998888865421 123456789999999999999888875 2222223344455444332 23455
Q ss_pred HHHHhhhCCCC-------CCCCCHHHHHHHHHHhh--cCCeEEEEEeCCCCCChhhhh-hhccCC----CCCCCCceEEE
Q 045012 235 SILKSIANDHS-------KNDDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYNSWC-TLSCPF----GAGASGSKIVV 300 (576)
Q Consensus 235 ~il~~l~~~~~-------~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~-~l~~~l----~~~~~gs~ilv 300 (576)
.|..++..... .-.+++..+...|..-- .+-++++|+|.++-.-...-. .+...| ....|-+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 55555532211 12233444444443311 234678888887542110000 111111 11235567788
Q ss_pred EecchHHH-------HhhhcccceecCCCChHHHHHHHHHhh
Q 045012 301 THRNQDVA-------ATMRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 301 TtR~~~v~-------~~~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
|||-.... ..+.-..++-++.++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99975322 111122345567788888888887765
No 200
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.015 Score=62.01 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
-..++-|..+|+||.|||++|+.+.+ ...-.| +.++.+ +++.... .+....+.+.+++.
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~v------GeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYV------GESERAIREVFRKA 523 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhc------CchHHHHHHHHHHH
Confidence 35678899999999999999999998 333333 333221 1122111 12223333444444
Q ss_pred hcCCeEEEEEeCCCCCCh-----------hhhhhhccCCCCCCC--CceEEE-EecchHHHHhh-h---cccceecCCCC
Q 045012 262 LSGKKFLLVLDDVWNENY-----------NSWCTLSCPFGAGAS--GSKIVV-THRNQDVAATM-R---AVSGKTLKELS 323 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~~~--gs~ilv-TtR~~~v~~~~-~---~~~~~~l~~L~ 323 (576)
=+--+++|+||.++.... .-...++.-+..... +.-||- |.|...+-..+ . -...+.+..-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 345678999998854210 111222233322222 222333 33433332222 2 23556666666
Q ss_pred hHHHHHHHHHhhhCC
Q 045012 324 DDDCLRVLIQHSLGA 338 (576)
Q Consensus 324 ~~ea~~L~~~~~~~~ 338 (576)
.+.-.++|+.++-..
T Consensus 604 ~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 604 LEARLEILKQCAKKM 618 (693)
T ss_pred HHHHHHHHHHHHhcC
Confidence 777788888877543
No 201
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.54 E-value=0.1 Score=48.68 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=32.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
||-++-++++.-.-. +++.+-+.|.||||+||||-+..+++
T Consensus 30 VGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 30 VGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred hCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 788888887766653 35667889999999999998877765
No 202
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.54 E-value=0.0091 Score=57.50 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=54.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC-----------------
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS----------------- 245 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 245 (576)
+...++.|+|.+|+|||+|+.++... ...+-..++|++..+. +..+.+++ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45689999999999999999998653 2223456778887643 44444443 22221110
Q ss_pred --CCCCCHHHHHHHHHHhhcC-CeEEEEEeCCC
Q 045012 246 --KNDDDLNLLQEKLKKQLSG-KKFLLVLDDVW 275 (576)
Q Consensus 246 --~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~ 275 (576)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345566666666654 56689999974
No 203
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.53 E-value=0.021 Score=61.66 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=37.5
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+|+...++++.+.+.... ....-|.|+|..|+|||++|+.+.+.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999988887643 23456889999999999999999873
No 204
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.021 Score=54.45 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=106.1
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc---ch-hccccceEEEEeCCC----------C
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD---RV-QRHFEIKAWTCVSED----------F 227 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~-~~~f~~~~wv~~~~~----------~ 227 (576)
++++....+..... .+..+-+.++|++|.||-|.+..+.+.. .+ +-.-+..-|.+-+.. +
T Consensus 17 ~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 17 YHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred cHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 44444445554442 2456788999999999999886665421 00 111223344433222 1
Q ss_pred -----------ChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeE-EEEEeCCCCCChhhhhhhccCCCCCCCC
Q 045012 228 -----------DVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWCTLSCPFGAGASG 295 (576)
Q Consensus 228 -----------~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~g 295 (576)
...-+.+++++........+ .-..++| ++|+-.+++-..+.-..+++....-...
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 11233444444433222100 0012344 5566666554333334444444333456
Q ss_pred ceEEEEecch--HHHHhhhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhc
Q 045012 296 SKIVVTHRNQ--DVAATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLS 373 (576)
Q Consensus 296 s~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~ 373 (576)
+|+|+...+- -+...-...-.+.+...+++|....+++..-..+- ..+ .+++.+|+++++|+---.-.+...++
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7777744321 11221123356789999999999999887655443 221 58899999999997443333333322
Q ss_pred cC----------CChhhHHHHHhh
Q 045012 374 VK----------DDLNDWEFVLNT 387 (576)
Q Consensus 374 ~~----------~~~~~w~~~l~~ 387 (576)
-+ -...+|+.....
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred hccccccccCCCCCCccHHHHHHH
Confidence 11 124578877654
No 205
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.52 E-value=0.015 Score=65.12 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=65.9
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|-+..++.|.+.+..... ........+.++|++|+|||+||+.+.... . ...+.++.+.-..... ...+
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~~-~~~L- 533 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT-VSRL- 533 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhccccc-HHHH-
Confidence 8999999999888764211 012345678999999999999999998732 1 1223344332211111 1111
Q ss_pred HhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCC
Q 045012 238 KSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFG 290 (576)
Q Consensus 238 ~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 290 (576)
++.+... .......+.+.++ .....+|+||+++......+..+...+.
T Consensus 534 --iG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 534 --IGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --cCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 2211110 1111122223332 2344699999998877777766665554
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.038 Score=58.37 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
..+.=|.+||++|.|||-||++|+| +..-+| +++.++ +++....+ .........+.+.-
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR 601 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRAR 601 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhh
Confidence 3456788999999999999999999 333333 444432 22222211 22334444455555
Q ss_pred cCCeEEEEEeCCCCCC-----hhh------hhhhccCCCC--CCCCceEEEEecchHHHH-hh-h---cccceecCCCCh
Q 045012 263 SGKKFLLVLDDVWNEN-----YNS------WCTLSCPFGA--GASGSKIVVTHRNQDVAA-TM-R---AVSGKTLKELSD 324 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~-----~~~------~~~l~~~l~~--~~~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~ 324 (576)
..-+++|+||.++..- ... ...++.-+.. ...|..||-.|..+++.. .+ . -...+-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 6789999999985421 111 2223333322 234666777666554432 11 1 234566777778
Q ss_pred HHHHHHHHHhhhCCCCC-CCCchHHHHHHHHHHhcCCC
Q 045012 325 DDCLRVLIQHSLGAGVF-NIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 325 ~ea~~L~~~~~~~~~~~-~~~~~~~~~~~~I~~~c~G~ 361 (576)
+|-.++++...-....+ ..+-.+.++++. .+|.|.
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 88888888776532211 222355666542 355554
No 207
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.48 E-value=0.0098 Score=54.61 Aligned_cols=119 Identities=14% Similarity=0.023 Sum_probs=58.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC--CC------------CCCCCC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN--DH------------SKNDDD 250 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~------------~~~~~~ 250 (576)
-.+++|.|+.|.|||||++.+..-. ....+.+++.-. ++......+-..++- +. ...-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4689999999999999999998632 112233332211 111110111111110 00 001111
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 251 LNLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 251 ~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
-+...-.+...+-.++-+++||+... .+......+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 12222334555667788999999754 222222233222221123567888888776554
No 208
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.47 E-value=0.0029 Score=59.16 Aligned_cols=111 Identities=13% Similarity=0.175 Sum_probs=59.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChh-HHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVS-RVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
.++.|+|+.|.||||++..+... ........++. +.++.... .-...+..+- . ...+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~-vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----E-VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----c-cCCCccCHHHHHHHHhcC
Confidence 47899999999999999887763 22233334443 22221100 0000111110 0 011223345567777777
Q ss_pred CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 265 KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
.+=+|++|.+.+. +......... ..|..++.|+....+..
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 7889999999653 3333322222 23556777877655443
No 209
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.46 E-value=0.0055 Score=61.46 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-..+..++|+|++|.|||.+|+.+++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999984
No 210
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.46 E-value=0.0073 Score=64.88 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
.+.-+++.++|++|.||||||+-++++ ..| .++=+++|+.-+...+-..|...+.....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~---------------- 381 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSV---------------- 381 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccc----------------
Confidence 355689999999999999999988863 122 23446666665555555555544433221
Q ss_pred h--cCCeEEEEEeCCCCCC
Q 045012 262 L--SGKKFLLVLDDVWNEN 278 (576)
Q Consensus 262 l--~~kr~LlVlDdv~~~~ 278 (576)
+ .+++..||+|.++...
T Consensus 382 l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cccCCCcceEEEecccCCc
Confidence 2 2578889999997754
No 211
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.01 Score=57.82 Aligned_cols=80 Identities=13% Similarity=0.225 Sum_probs=49.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccch--hccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRV--QRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
-++|.++||||.|||+|.+.+++...+ .+.|....-+.+.. ..++...+.. ...-...+.+++.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 389999999999999999999987543 34455444444432 2333333322 2233445556666777
Q ss_pred cCCeE--EEEEeCCC
Q 045012 263 SGKKF--LLVLDDVW 275 (576)
Q Consensus 263 ~~kr~--LlVlDdv~ 275 (576)
.++.. .+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 66554 44568883
No 212
>PRK14974 cell division protein FtsY; Provisional
Probab=96.44 E-value=0.04 Score=55.65 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCC--CCCCHHH-HHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSK--NDDDLNL-LQEK 257 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~--~~~~~~~-l~~~ 257 (576)
.++.++.++|++|+||||++..++.... ...+. ++.+. .+.+. ..+-++.....++.+... ...+... +.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 3478999999999999998888876322 12232 23333 23332 233455566666543211 1222222 2333
Q ss_pred HHHhhcCCeEEEEEeCCCCC
Q 045012 258 LKKQLSGKKFLLVLDDVWNE 277 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~~~ 277 (576)
+...-....=++++|.....
T Consensus 215 i~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 33322222338889988553
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.011 Score=60.44 Aligned_cols=90 Identities=19% Similarity=0.111 Sum_probs=50.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
...++.++|+.|+||||++..+............+..++... .....+-++...+.++.+.. ...+...+...+.+ +
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-h
Confidence 347999999999999999999987432221122344444322 22344555555566655432 22222333333433 3
Q ss_pred cCCeEEEEEeCCCC
Q 045012 263 SGKKFLLVLDDVWN 276 (576)
Q Consensus 263 ~~kr~LlVlDdv~~ 276 (576)
.++ -+|++|..-.
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 5566898854
No 214
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.015 Score=60.29 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 165 KDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.|+++|+++|..+.. -++.=++=|.++|++|.|||-||++++-...+ -+|...+..|+.. +
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEFdEm------~---- 377 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEFDEM------F---- 377 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccchhhh------h----
Confidence 578888999876531 12344677899999999999999999874322 1222233333211 0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 242 NDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 242 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
-........+.+...-+.-+++|++|.++.
T Consensus 378 -----VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 378 -----VGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred -----hcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 011122233333333346789999999865
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.40 E-value=0.0095 Score=53.06 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=59.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC---CCChhHHHHHHHHhh-----hCCCCCCCCCH-H----
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE---DFDVSRVTQSILKSI-----ANDHSKNDDDL-N---- 252 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l-----~~~~~~~~~~~-~---- 252 (576)
..|-|++..|.||||+|....- +...+-..+.++..-. ......++..+ ..+ +....-...+. +
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888899999999976654 3333322344443322 22333333333 101 11000000111 1
Q ss_pred --HHHHHHHHhhcC-CeEEEEEeCCCCC---ChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 253 --LLQEKLKKQLSG-KKFLLVLDDVWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 253 --~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
...+..++.+.. +-=|||||++-.. .....+.+...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122233344444 4459999998332 1123334555555555677899999985
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.021 Score=58.76 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=53.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhc--cccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQR--HFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~ 259 (576)
.++++.++|+.|+||||.+..++....... +-..+..++.. .+. ..+-++...+.++.+.. .......+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 467999999999999999988886433221 11233344433 333 23335556666655432 3344555655555
Q ss_pred HhhcCCeEEEEEeCCCC
Q 045012 260 KQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 260 ~~l~~kr~LlVlDdv~~ 276 (576)
.. ...-++++|....
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888898854
No 217
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.35 E-value=0.028 Score=51.69 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC--CCCChhHH------HHHHHHhhhCCCC--C---CCCC
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS--EDFDVSRV------TQSILKSIANDHS--K---NDDD 250 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~il~~l~~~~~--~---~~~~ 250 (576)
+-.+++|.|+.|.|||||.+.++.-. ....+.+++.-. ...+.... ..++++.++.... . .-..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34689999999999999999998632 223444443211 11122111 1123444433211 0 1111
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCC-CC-CceEEEEecchHHH
Q 045012 251 LNLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAG-AS-GSKIVVTHRNQDVA 308 (576)
Q Consensus 251 ~~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 308 (576)
-+...-.+...+-..+-++++|+.-. .+......+...+..- .. +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22222345556667888999999743 2223333333333221 12 56788888876554
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.34 E-value=0.025 Score=59.23 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=47.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
.+++.++|++|+||||++..+.........-..+..++.. .+. ..+.+....+.++.+.. ...+...+...+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-
Confidence 4699999999999999998877632211222334455543 222 12223333344443332 223344555555543
Q ss_pred cCCeEEEEEeCCCC
Q 045012 263 SGKKFLLVLDDVWN 276 (576)
Q Consensus 263 ~~kr~LlVlDdv~~ 276 (576)
. ..=+|++|..-.
T Consensus 298 ~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 R-DCDVILIDTAGR 310 (424)
T ss_pred C-CCCEEEEeCCCC
Confidence 2 346788897633
No 219
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.34 E-value=0.027 Score=63.36 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=70.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+|+...+..+.+.+.... ....-|.|+|.+|+|||++|+.+++... ... ...+.+++..- ....+-..++..
T Consensus 378 liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~-~~~v~i~c~~~-~~~~~~~~lfg~ 450 (686)
T PRK15429 378 IIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG-RNN-RRMVKMNCAAM-PAGLLESDLFGH 450 (686)
T ss_pred eeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC-CCC-CCeEEEecccC-ChhHhhhhhcCc
Confidence 4899988888877775432 2335688999999999999999987321 111 12223333321 111112222221
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC-----------CCCceEEEEecch
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG-----------ASGSKIVVTHRNQ 305 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~ 305 (576)
..+... . . .......+. ....-.|+|||+..........+...+..+ ..+.+||.||...
T Consensus 451 ~~~~~~-g-~-~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 451 ERGAFT-G-A-SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccc-c-c-ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111 0 0 000111121 123457999999886655555555444321 1345888888654
No 220
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.02 Score=52.17 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=59.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC--CCChhHHHHHHHHhhhCCCCCCC-------CC-HHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE--DFDVSRVTQSILKSIANDHSKND-------DD-LNL 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~-------~~-~~~ 253 (576)
.-.+++|+|+.|.|||||.+.++.-. ....+.+++.-.. ...... .+..+.-+......-. -+ -+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~-~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLES-LRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHH-HHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 34689999999999999999998632 2233444332110 001111 1110000000000000 00 111
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCCCCCceEEEEecchHHHHh
Q 045012 254 LQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAAT 310 (576)
Q Consensus 254 l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 310 (576)
..-.+...+..++-+++||+... .+......+...+.....+..||++|.+......
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 12234555667788999999754 2222223333222221234678888887766543
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.31 E-value=0.026 Score=59.05 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIAND 243 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~ 243 (576)
..+.++.++|++|+||||++..++..... ..+ .+..++. +.+. ..+.+..+..+++.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecC-CCCCHHHHHHHHHHHHHcCCc
Confidence 35789999999999999999998874321 222 2333333 2222 244455666665543
No 222
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.31 E-value=0.087 Score=57.43 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|....+.++.+.+.... ....-|.|+|.+|+|||++|+.+++.
T Consensus 198 liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred eEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 3899999999888876542 23345779999999999999999873
No 223
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.012 Score=59.53 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=40.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhcc----ccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
....++-|+|++|+|||+++.+++........ =..++|++..+.+++..+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 45689999999999999999998754222111 13688999988888766543 444443
No 224
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.29 E-value=0.012 Score=59.20 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=40.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
....++-|+|++|+|||+++.+++....... .-..++|++....++..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3568899999999999999998876432211 11268899998888877654 4444443
No 225
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.017 Score=56.50 Aligned_cols=92 Identities=26% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHH---HHHHHH
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLN---LLQEKL 258 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~---~l~~~l 258 (576)
-+.-+++=|+|+.|.||||+|.+++-. ....-...+|++.-+.+++..+..-....+..-....+.+.+ .+.+.+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 356689999999999999999888763 334444789999999888876543332212221111233333 334444
Q ss_pred HHhhcCCeEEEEEeCCC
Q 045012 259 KKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l~~kr~LlVlDdv~ 275 (576)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444456799999983
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.29 E-value=0.019 Score=56.94 Aligned_cols=135 Identities=23% Similarity=0.307 Sum_probs=71.6
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc-chhccccceE----EEEeCCCCC-------
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD-RVQRHFEIKA----WTCVSEDFD------- 228 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~----wv~~~~~~~------- 228 (576)
-+|..+..--.++|+. +.+..|.+.|.+|.|||.||-+..-.. -.+..|...+ -+.++++..
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 4567777777777864 568999999999999999995443211 1223343322 122332221
Q ss_pred --hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHH---------HhhcCC---eEEEEEeCCCCCChhhhhhhccCCCCCCC
Q 045012 229 --VSRVTQSILKSIANDHSKNDDDLNLLQEKLK---------KQLSGK---KFLLVLDDVWNENYNSWCTLSCPFGAGAS 294 (576)
Q Consensus 229 --~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 294 (576)
+.--.+.|...+..-..........+...+. .+.+++ .-+||+|..++-.+.+...+.. ..+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hccC
Confidence 1112222222222111111111222222211 122343 4589999998876666555544 3468
Q ss_pred CceEEEEecc
Q 045012 295 GSKIVVTHRN 304 (576)
Q Consensus 295 gs~ilvTtR~ 304 (576)
||||+.|.-.
T Consensus 378 GsKIVl~gd~ 387 (436)
T COG1875 378 GSKIVLTGDP 387 (436)
T ss_pred CCEEEEcCCH
Confidence 9999988753
No 227
>PRK08233 hypothetical protein; Provisional
Probab=96.28 E-value=0.013 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+|+|.|.+|+||||||..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999863
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.004 Score=54.50 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999874
No 229
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.26 E-value=0.022 Score=52.00 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhccc---chhcc---cc--ceEEEEeCCCCChhHHHHHHHHhhhCCCC---CCCC--C
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDD---RVQRH---FE--IKAWTCVSEDFDVSRVTQSILKSIANDHS---KNDD--D 250 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~--~ 250 (576)
.-.+++|+|+.|+|||||.+.+..+. .+... |. ...|+ .+ .+.+..++.... .... +
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11111 10 11222 11 345555554321 0111 1
Q ss_pred H-HHHHHHHHHhhcCC--eEEEEEeCCCC-CChhhhhhhccCCCC-CCCCceEEEEecchHHHH
Q 045012 251 L-NLLQEKLKKQLSGK--KFLLVLDDVWN-ENYNSWCTLSCPFGA-GASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 251 ~-~~l~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 309 (576)
. ....-.+...+..+ +-++++|..-. .+......+...+.. ...|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 1 22222344555556 77888898743 222333333333322 124667888888876654
No 230
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.25 E-value=0.026 Score=57.24 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=41.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
....++-|+|.+|+|||+|+..++-...... .-..++|++....|++.++ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 4567889999999999999988774322111 1126889999998888765 455665543
No 231
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.01 Score=55.35 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCC-CCCCCCCHHHHHHHHHHh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAND-HSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~l~~~l~~~ 261 (576)
.++.+|+|.|.+|.||||+|+.++. .+..... .-++...-+. ..-........... ..+..-+.+.+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~--~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEKV--VVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcc--eEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4568999999999999999999987 3332211 1111111111 00001111111111 111456777888888888
Q ss_pred hcCCe
Q 045012 262 LSGKK 266 (576)
Q Consensus 262 l~~kr 266 (576)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 232
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.25 Score=49.20 Aligned_cols=153 Identities=12% Similarity=0.037 Sum_probs=89.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccch------h--ccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRV------Q--RHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQ 255 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~--~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ 255 (576)
-.++..++|..|.||+++|..+.+..-- . .|-+...++...+ ..-..+++.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---------------------~~i~vd~Ir 75 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---------------------KDLSKSEFL 75 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---------------------CcCCHHHHH
Confidence 4577889999999999999888763200 0 1111122221101 112223333
Q ss_pred HHHHHh-----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh-hhcccceecCCCChHHHH
Q 045012 256 EKLKKQ-----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT-MRAVSGKTLKELSDDDCL 328 (576)
Q Consensus 256 ~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~ 328 (576)
+...+. -.+.+-++|+|++...+......++..+....+++.+|++|.+ ..+... ......+++.++++++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222221 0147778899999877766777777777665567777765544 334433 334678999999999998
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 329 RVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 329 ~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
+.+.... . + ++.+..++...+|.--|+..
T Consensus 156 ~~l~~~~--~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN--K-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC--C-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 8776541 1 1 14455566666663345444
No 233
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.22 E-value=0.0037 Score=66.31 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=38.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|-++.+++|++.|......-+...+++.++||+|+||||||+.+.+
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 89999999999998433211234568999999999999999999987
No 234
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.22 E-value=0.0055 Score=55.71 Aligned_cols=40 Identities=28% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 224 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 224 (576)
+..++.+.|+.|+|||.||+.+..-..+ ......+-++.+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s 41 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMS 41 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhh
Confidence 3568899999999999999999873221 233344445444
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.21 E-value=0.021 Score=55.60 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH-
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l- 254 (576)
.-+-++|.|.+|+|||||+..+++. +..+|. ..+++.+++.. .+.++..++...-.... ..+.......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999984 444454 34455565544 34555555554311110 0011111111
Q ss_pred ----HHHHHHhh---cCCeEEEEEeCC
Q 045012 255 ----QEKLKKQL---SGKKFLLVLDDV 274 (576)
Q Consensus 255 ----~~~l~~~l---~~kr~LlVlDdv 274 (576)
.-.+.+++ .++.+||++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 11233444 388999999998
No 236
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.20 E-value=0.023 Score=57.51 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=42.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchh----ccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
..-.+.-|+|++|+|||+|+.+++-..... ..-...+|++....|++.++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455788899999999999998886422221 1124678999999888877654 5555544
No 237
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.18 E-value=0.035 Score=48.99 Aligned_cols=106 Identities=18% Similarity=0.087 Sum_probs=56.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
.-.+++|+|+.|.|||||++.+..-. ......+|+.-. ..++-.. +-+.-+...-.+...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-------------~~i~~~~--~lS~G~~~rv~laral~ 86 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-------------VKIGYFE--QLSGGEKMRLALAKLLL 86 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-------------EEEEEEc--cCCHHHHHHHHHHHHHh
Confidence 34689999999999999999998632 222344443210 0000000 01111222233455566
Q ss_pred CCeEEEEEeCCCC-CChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 264 GKKFLLVLDDVWN-ENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 264 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
.++-++++|+... .+......+...+... +..||++|.+.....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 6778899998743 2333333333333222 246788887765543
No 238
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.17 E-value=0.011 Score=55.23 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=52.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh-h--
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ-L-- 262 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l-- 262 (576)
++..|.|++|+||||++..+...... . ...+.+..... .....+.+..+.. ..++..+....... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~--~-g~~v~~~apT~----~Aa~~L~~~~~~~----a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEA--A-GKRVIGLAPTN----KAAKELREKTGIE----AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHH--T-T--EEEEESSH----HHHHHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHh--C-CCeEEEECCcH----HHHHHHHHhhCcc----hhhHHHHHhcCCcccccc
Confidence 68899999999999999988763322 2 12233332221 2222233332211 11111100000000 0
Q ss_pred ---cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEec
Q 045012 263 ---SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHR 303 (576)
Q Consensus 263 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 303 (576)
..+.-+||+|++.-.+...+..+...... .|+++|+.-=
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345999999987776677777666554 4677776553
No 239
>PHA02244 ATPase-like protein
Probab=96.16 E-value=0.032 Score=56.48 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|++|+|||+||+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999873
No 240
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.16 E-value=0.036 Score=52.21 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCC--CCCCceEEEEecchHHHHhhh
Q 045012 252 NLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGA--GASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 252 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 312 (576)
++..-.+.+.|-..+-+|+.|.--. -+...-..+...+.. ...|..||+.|.++.++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 3444566777888888999997522 122222233333322 234778999999999998654
No 241
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.05 Score=55.29 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLKK 260 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~ 260 (576)
.+.+++.|+|+.|+||||++..+.... ...-..+.+++.. ++. ..+-++...+.++.+.. ...+..++...+..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaD-tyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~ 279 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQY 279 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCC-ccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHH
Confidence 356899999999999999998888632 2222234455543 332 34556666666654432 23455566555554
Q ss_pred hhc-CCeEEEEEeCCCC
Q 045012 261 QLS-GKKFLLVLDDVWN 276 (576)
Q Consensus 261 ~l~-~kr~LlVlDdv~~ 276 (576)
.-. +..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3346788888754
No 242
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.14 E-value=0.024 Score=54.42 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..++.+++|.|++|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999886
No 243
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.14 E-value=0.022 Score=51.44 Aligned_cols=118 Identities=16% Similarity=0.026 Sum_probs=61.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC--CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE--DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
+-.+++|.|+.|.|||||.+.+..- .......+++.-.. ..+..+..+ ..++... +-..-+...-.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHH
Confidence 3468999999999999999999863 22334444443211 111111111 1111111 111222223345556
Q ss_pred hcCCeEEEEEeCCCC-CChhhhhhhccCCCCC-CCCceEEEEecchHHHH
Q 045012 262 LSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAG-ASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 262 l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 309 (576)
+-.++-++++|+.-. .+......+...+..- ..|..||++|.+.....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 667788899999743 2333333333333211 23667888888865443
No 244
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.14 E-value=0.052 Score=49.17 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEE-------EeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWT-------CVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLL 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l 254 (576)
.-.+++|+|+.|.|||||++.+..-... ..+.+++ .+.+... ...+...+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~-~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD-VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC-CCCHHHHH
Confidence 3468999999999999999999863221 1122211 1222221 11222222210 111 22222233
Q ss_pred HHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 255 QEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 255 ~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
.-.+...+-.++-++++|+--. .+......+...+... +..||++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 3345555666778889998643 2222222333333221 356888887765543
No 245
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.02 Score=55.01 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-----CCChhHHHHHHHHhhhCCCCC------CCCCHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-----DFDVSRVTQSILKSIANDHSK------NDDDLN 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~~------~~~~~~ 252 (576)
...+++|+|.+|.|||||++.+.. ....-.+.++..-.+ .....+...++++.++..... +...-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346899999999999999999986 333333444443221 122334566666666643321 112222
Q ss_pred HHHHHHHHhhcCCeEEEEEeCCCCCC----hhhhhhhccCCCCCCCCceEEEEecchHHHHhhh
Q 045012 253 LLQEKLKKQLSGKKFLLVLDDVWNEN----YNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 253 ~l~~~l~~~l~~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 312 (576)
.-.-.+.+.|.-++-+||.|..-+.- +.+.-.++..+.. ..|...+..|.+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 22234667788899999999974421 1111122222221 24666777888877776654
No 246
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.11 E-value=0.035 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+..|+|++|+|||+|+..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999888753
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.012 Score=63.09 Aligned_cols=159 Identities=13% Similarity=0.048 Sum_probs=84.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHH----HHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQE----KLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~----~l~ 259 (576)
...-|.|.|+.|+|||+||+.+++... +...-.+..++.+.- .....+.++. .+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l--------------------~~~~~e~iQk~l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTL--------------------DGSSLEKIQKFLNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhc--------------------cchhHHHHHHHHHHHHH
Confidence 346788999999999999999998544 334334445554421 1112333333 334
Q ss_pred HhhcCCeEEEEEeCCCCC------Chhhhhh-----------hccCCCCCCCCce--EEEEecchHHHHh-h----hccc
Q 045012 260 KQLSGKKFLLVLDDVWNE------NYNSWCT-----------LSCPFGAGASGSK--IVVTHRNQDVAAT-M----RAVS 315 (576)
Q Consensus 260 ~~l~~kr~LlVlDdv~~~------~~~~~~~-----------l~~~l~~~~~gs~--ilvTtR~~~v~~~-~----~~~~ 315 (576)
+.+...+-+|||||++.. +..+|.. +...+. ..+.+ +|.|.....-... . -...
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEE
Confidence 455678999999998431 1112211 111111 23333 4445544322111 1 1224
Q ss_pred ceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHH
Q 045012 316 GKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLG 369 (576)
Q Consensus 316 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~ 369 (576)
...|.++...+-.++++...-.... ....+...-+..+|+| .|.-+.++-
T Consensus 567 ~~~L~ap~~~~R~~IL~~~~s~~~~----~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTIFSKNLS----DITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred EEecCCcchhHHHHHHHHHHHhhhh----hhhhHHHHHHHHhcCCccchhHHHHH
Confidence 5678888888777777654322111 1112333447888887 455555443
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.10 E-value=0.043 Score=58.80 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=27.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 222 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 222 (576)
..+++.++||+|+||||.++.+++. -.|+..=|.+
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 4569999999999999999999873 2355555754
No 249
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.09 E-value=0.025 Score=52.67 Aligned_cols=81 Identities=23% Similarity=0.252 Sum_probs=43.0
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhcccc---ceEEEEeCCCCChhHHHHHHHHhhh---CCCCCCCCCHHHHHHHHHH
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFE---IKAWTCVSEDFDVSRVTQSILKSIA---NDHSKNDDDLNLLQEKLKK 260 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~il~~l~---~~~~~~~~~~~~l~~~l~~ 260 (576)
||+|.|++|+||||+|+.+...... .... ................... -.... .......-+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6899999999999999999873221 1122 1223332222221111111 11111 1111144677778888877
Q ss_pred hhcCCeEEE
Q 045012 261 QLSGKKFLL 269 (576)
Q Consensus 261 ~l~~kr~Ll 269 (576)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 766665443
No 250
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.08 E-value=0.027 Score=56.44 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchh----ccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
..-.++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455789999999999999998876422221 1124678999988888877654 5565544
No 251
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.07 E-value=0.034 Score=55.94 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
....++.|+|.+|+|||+|+..++....... .-..++|++....++..+ +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4568999999999999999988875322111 112568998888777765 344555544
No 252
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.15 Score=47.91 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=72.1
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
-.+++-+.++|++|.|||-||+.|+++ ....|+.+|+. ++.+ ..-+... .-..+.+.-.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----elvq----k~igegs------rmvrelfvma 236 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----ELVQ----KYIGEGS------RMVRELFVMA 236 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----HHHH----HHhhhhH------HHHHHHHHHH
Confidence 356678899999999999999999974 23445666643 2221 1111110 0111111111
Q ss_pred hcCCeEEEEEeCCCCCC--------------hhhhhhhccCCCCC--CCCceEEEEecchHHHHh-h----hcccceecC
Q 045012 262 LSGKKFLLVLDDVWNEN--------------YNSWCTLSCPFGAG--ASGSKIVVTHRNQDVAAT-M----RAVSGKTLK 320 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~ 320 (576)
-..-+.+|+.|.+++.. +...-.++..+... .++.+||+.|..-++... . .-...++..
T Consensus 237 rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 237 REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCC
Confidence 13467788888886521 11222344444322 356778886654333221 1 123567777
Q ss_pred CCChHHHHHHHHHhh
Q 045012 321 ELSDDDCLRVLIQHS 335 (576)
Q Consensus 321 ~L~~~ea~~L~~~~~ 335 (576)
+-+++.-.++++-+.
T Consensus 317 ~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 317 PPNEEARLDILKIHS 331 (404)
T ss_pred CCCHHHHHHHHHHhh
Confidence 777777777776554
No 253
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.04 E-value=0.024 Score=54.73 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=34.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 235 (576)
+...++.|.|++|+|||++|.++... ....-..++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 45689999999999999999887652 123345677887654 44455444
No 254
>PTZ00301 uridine kinase; Provisional
Probab=96.03 E-value=0.013 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47899999999999999998876
No 255
>PTZ00035 Rad51 protein; Provisional
Probab=96.03 E-value=0.049 Score=55.30 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=39.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchh----ccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
..-.++.|+|++|+|||+|+..++-..... ..-..++|++....+++.+ +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 456899999999999999998887432211 1123466888877777766 344455544
No 256
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.032 Score=59.06 Aligned_cols=89 Identities=17% Similarity=0.067 Sum_probs=47.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC--hhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD--VSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
...+++|+|++|+||||++..+............+..++.. .+. ..+.+......++.... ...+...+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh
Confidence 45899999999999999998887632211112233444432 222 22333333333333222 223344455555433
Q ss_pred hcCCeEEEEEeCCCC
Q 045012 262 LSGKKFLLVLDDVWN 276 (576)
Q Consensus 262 l~~kr~LlVlDdv~~ 276 (576)
. ..=+|++|..-.
T Consensus 427 -~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 -R-DYKLVLIDTAGM 439 (559)
T ss_pred -c-cCCEEEecCCCc
Confidence 3 345788888743
No 257
>PTZ00494 tuzin-like protein; Provisional
Probab=96.02 E-value=0.43 Score=49.11 Aligned_cols=163 Identities=10% Similarity=0.110 Sum_probs=98.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+.|++|-..+.+.|.+-+ ...++++.+.|.-|.||++|.+.....+. -..++|.+... ++.++.+.+.
T Consensus 373 ~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVVKA 441 (664)
T PTZ00494 373 EVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVVRA 441 (664)
T ss_pred ccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHHHH
Confidence 4899999999999887765 46789999999999999999988776322 34567777654 4567889999
Q ss_pred hhCCCCCC-CCCHHHHHHHHHH---hhcCCeEEEEEeCCCCCC-hhhhhhhccCCCCCCCCceEEEEecchHHHHhh---
Q 045012 240 IANDHSKN-DDDLNLLQEKLKK---QLSGKKFLLVLDDVWNEN-YNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM--- 311 (576)
Q Consensus 240 l~~~~~~~-~~~~~~l~~~l~~---~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--- 311 (576)
++.+.-.. .+-++-+.+..+. ...++.-+||+-==...+ ..-+.+.. .|.....-+.|++---.+.+....
T Consensus 442 LgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 442 LGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred hCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccC
Confidence 98765321 2233333333332 234566666663211111 11122211 122233456676644433222111
Q ss_pred hcccceecCCCChHHHHHHHHHh
Q 045012 312 RAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 312 ~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
.....|.+.+++.++|.++-.+.
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhcc
Confidence 12256788999999998866554
No 258
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.061 Score=52.99 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=36.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
.-.++.|.|.+|+||||++.+++.+.. ..+-..++|++... +..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346889999999999999998876421 22234577877655 4455666655543
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.023 Score=59.35 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++.++.++|++|+||||++..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999998887763
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.056 Score=60.65 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=69.2
Q ss_pred cccchhHHHHHHHHhcCCCCCC--CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPD--NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 238 (576)
+|-++.+..|.+.+.....+.. .+...+.+.|+.|+|||.||+++.. -+-+..+..+-++.+. ... +.+
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-vsk 635 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-VSK 635 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-hhh
Confidence 7888889999888876543112 2566778899999999999999876 2333334444444432 222 223
Q ss_pred hhhCCCCC-CCCCHHHHHHHHHHhhcCCeE-EEEEeCCCCCChhhhhhhccCCC
Q 045012 239 SIANDHSK-NDDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWCTLSCPFG 290 (576)
Q Consensus 239 ~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~ 290 (576)
.++.+..- ..... ..|.+.++.++| +|+||||+..++.....+...+.
T Consensus 636 ligsp~gyvG~e~g----g~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEG----GQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred ccCCCcccccchhH----HHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 32332211 11222 245556667775 67789998776655554444433
No 261
>PRK07667 uridine kinase; Provisional
Probab=96.00 E-value=0.015 Score=54.23 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+.|.+.+... .+...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~----~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKH----KENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhc----CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666543 244589999999999999999999873
No 262
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.07 Score=50.57 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=84.4
Q ss_pred cccchhHH---HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKE---EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..+. -|.+.|..++.=++-.++-|..+|++|.|||-+|+++.+..++ . ++.+. ...-|-
T Consensus 124 iGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p-----~l~vk-------at~liG 189 (368)
T COG1223 124 IGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--P-----LLLVK-------ATELIG 189 (368)
T ss_pred hchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--c-----eEEec-------hHHHHH
Confidence 67665443 3566665543212456789999999999999999999984332 1 11111 011111
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC------------hhhhhhhccCCCC--CCCCceEEEEec
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN------------YNSWCTLSCPFGA--GASGSKIVVTHR 303 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~ilvTtR 303 (576)
+..+ +...++.+.....-+.-+|++++|.++... .+..+.++..+.. .+.|...|-.|.
T Consensus 190 ehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 190 EHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred HHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 1111 122223333333334578999999885421 1122233333322 234655566666
Q ss_pred chHHHHh-hh--cccceecCCCChHHHHHHHHHhhh
Q 045012 304 NQDVAAT-MR--AVSGKTLKELSDDDCLRVLIQHSL 336 (576)
Q Consensus 304 ~~~v~~~-~~--~~~~~~l~~L~~~ea~~L~~~~~~ 336 (576)
+++.... +. ....++..--+++|-.+++...+-
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 6544332 11 235667777788888888877763
No 263
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.99 E-value=0.027 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 264
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.033 Score=53.35 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=67.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccc-----hh------ccc---cceEEEEeCCCC------Ch---------------
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDR-----VQ------RHF---EIKAWTCVSEDF------DV--------------- 229 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~~~~~------~~--------------- 229 (576)
-..++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.=...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999876211 00 001 123444311111 11
Q ss_pred -------hHHHHHHHHhhhCCCCC-----CCCCHHHHHHHHHHhhcCCeEEEEEeCCCC----CChhhhhhhccCCCCCC
Q 045012 230 -------SRVTQSILKSIANDHSK-----NDDDLNLLQEKLKKQLSGKKFLLVLDDVWN----ENYNSWCTLSCPFGAGA 293 (576)
Q Consensus 230 -------~~~~~~il~~l~~~~~~-----~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~ 293 (576)
.+...+.++.++...-. .-+.-+...-.|.+.|..++=||+||.--. ......-.++..+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 13334444444432110 112222233456778888999999998532 2223333444444433
Q ss_pred CCceEEEEecchHHHH
Q 045012 294 SGSKIVVTHRNQDVAA 309 (576)
Q Consensus 294 ~gs~ilvTtR~~~v~~ 309 (576)
|..||++|.+-....
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 888999999865443
No 265
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.98 E-value=0.023 Score=56.71 Aligned_cols=87 Identities=22% Similarity=0.157 Sum_probs=52.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
+.-+++-|+|+.|+||||||.++... ....-...+|+...+.+++. .++.++...+. .++..++.....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999888863 33344567899887776653 34444443221 234455555555
Q ss_pred HHhhcC-CeEEEEEeCCCC
Q 045012 259 KKQLSG-KKFLLVLDDVWN 276 (576)
Q Consensus 259 ~~~l~~-kr~LlVlDdv~~ 276 (576)
...++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555544 345889999844
No 266
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.0062 Score=59.87 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 168 EEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 168 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++.+... -+-+.++|++|+|||++++.....
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhcc
Confidence 3455555543 256789999999999999988763
No 267
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.96 E-value=0.0052 Score=52.75 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 268
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.025 Score=59.12 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+.++.++|++|+||||++..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999998877765
No 269
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.94 E-value=0.032 Score=50.91 Aligned_cols=22 Identities=45% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988863
No 270
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.91 E-value=0.041 Score=50.28 Aligned_cols=109 Identities=12% Similarity=-0.010 Sum_probs=55.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC-CCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS-KNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~~~~~~~~l~~~l~~~l 262 (576)
.-.+++|+|+.|.|||||.+.+..-. ......+++.-.. ++.... ..-..-+...-.+...+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~--------------i~~~~q~~~LSgGq~qrv~laral 86 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGIT--------------PVYKPQYIDLSGGELQRVAIAAAL 86 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEE--------------EEEEcccCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999988632 1222333321100 000000 00111122223445556
Q ss_pred cCCeEEEEEeCCCC-CChhhhhhhccCCCCC--CCCceEEEEecchHHHH
Q 045012 263 SGKKFLLVLDDVWN-ENYNSWCTLSCPFGAG--ASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 263 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~ilvTtR~~~v~~ 309 (576)
..++-++++|..-. .+......+...+... ..+..||++|.+.....
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66788999998743 2222222233222211 12356778887765544
No 271
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.89 E-value=0.029 Score=58.08 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 36899999999999999998854
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.88 E-value=0.043 Score=56.42 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
..-.++.|.|.+|+|||||+.+++.. ....-..++|++... +...+ ..-+..++..... ...+.+.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34579999999999999999998863 222334566776543 23332 2223444433221 223445554444
Q ss_pred HHhhcCCeEEEEEeCCCC
Q 045012 259 KKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 259 ~~~l~~kr~LlVlDdv~~ 276 (576)
. ..++-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 3 24677899999843
No 273
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.87 E-value=0.028 Score=56.97 Aligned_cols=43 Identities=23% Similarity=0.129 Sum_probs=33.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|+...+.++.+.+.... ....-|.|+|.+|+||+++|+.++.
T Consensus 9 iG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 9 LGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred EECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 788888888888776543 2234578999999999999999875
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.87 E-value=0.042 Score=53.99 Aligned_cols=91 Identities=19% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCCh--hHHHHHHHHhhhCCCC--CCCCCH-HHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDV--SRVTQSILKSIANDHS--KNDDDL-NLLQEK 257 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~--~~~~~~-~~l~~~ 257 (576)
.+.+++.++|++|+||||++..++... ...-..+.++... .+.. .+-+....+..+.+.. ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 456899999999999999998887633 2222334455433 3332 2333444444442210 011222 223344
Q ss_pred HHHhhcCCeEEEEEeCCCC
Q 045012 258 LKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~~ 276 (576)
+........=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444455788888744
No 275
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.87 E-value=0.047 Score=60.66 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=68.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
+-+.|+|++|+|||++|+.+.+. ....| +.++.. ++. .... ......+...+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~~----~~~~------g~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DFV----EMFV------GVGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----HhH----Hhhh------cccHHHHHHHHHHHHhcC
Confidence 44899999999999999999873 22222 222211 111 1110 111223333344444557
Q ss_pred eEEEEEeCCCCCC----------hhhh----hhhccCCCC--CCCCceEEEEecchHHHHh-h----hcccceecCCCCh
Q 045012 266 KFLLVLDDVWNEN----------YNSW----CTLSCPFGA--GASGSKIVVTHRNQDVAAT-M----RAVSGKTLKELSD 324 (576)
Q Consensus 266 r~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~ 324 (576)
+++|++|+++... ...+ ..++..+.. ...+.-+|.||..++.... . .....+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8999999985521 0111 112211211 1234455557776543221 1 1235677777787
Q ss_pred HHHHHHHHHhhh
Q 045012 325 DDCLRVLIQHSL 336 (576)
Q Consensus 325 ~ea~~L~~~~~~ 336 (576)
++-.+++..+..
T Consensus 325 ~~R~~Il~~~~~ 336 (644)
T PRK10733 325 RGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHhh
Confidence 777788776653
No 276
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.86 E-value=0.0068 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 277
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.85 E-value=0.007 Score=68.11 Aligned_cols=176 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CC----CCHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--ND----DDLNLLQEK 257 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~----~~~~~l~~~ 257 (576)
+.+++.|+|+.|.|||||.+.+....-. ....++|....... ...+.++...++..... .. .....+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3478999999999999999888653100 11111222221100 01122222222111100 00 111122222
Q ss_pred HHHhhcCCeEEEEEeCCCCC-Chhhhhhh----ccCCCCCCCCceEEEEecchHHHHhhhcccceecCCCChH-HHHHHH
Q 045012 258 LKKQLSGKKFLLVLDDVWNE-NYNSWCTL----SCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKELSDD-DCLRVL 331 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~L~ 331 (576)
+... +.+-|+++|.+-.. ++.+...+ ...+. ..|+.+|+||....+.........+....+..+ +... +
T Consensus 397 l~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p 471 (771)
T TIGR01069 397 LSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P 471 (771)
T ss_pred HHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e
Confidence 2221 47899999998652 22222222 22332 257889999999877543321111111111111 1110 1
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccC
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVK 375 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~ 375 (576)
..+.. .+.+. ...+-.|++++ |+|-.+.--|..+...
T Consensus 472 ~Ykl~-~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 508 (771)
T TIGR01069 472 TYKLL-KGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE 508 (771)
T ss_pred EEEEC-CCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 11111 11101 24566777777 7888877777766543
No 278
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.84 E-value=0.037 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+|.|.+|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 279
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.012 Score=51.52 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCC
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAND 243 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 243 (576)
+|.|.|++|.||||+|+.+.++.... . .+.-.+++++++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------L------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------e------eeccHHHHHHHHHcCCC
Confidence 68999999999999999998743221 1 13446788888877654
No 280
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.83 E-value=0.0062 Score=55.32 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=42.8
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHHHhhcC
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~~~l~~ 264 (576)
++.|.|.+|+||||+|..+..... ...+++.-...+ ..+....|.......... ..+....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999876311 112333333333 334445554433322210 111222344444443332
Q ss_pred CeEEEEEeCC
Q 045012 265 KKFLLVLDDV 274 (576)
Q Consensus 265 kr~LlVlDdv 274 (576)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888886
No 281
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.82 E-value=0.059 Score=48.77 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEEeCCCC-CC-hhhhhhhccCCC-CCCCCceEEEEecchHHHHhhh
Q 045012 251 LNLLQEKLKKQLSGKKFLLVLDDVWN-EN-YNSWCTLSCPFG-AGASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 251 ~~~l~~~l~~~l~~kr~LlVlDdv~~-~~-~~~~~~l~~~l~-~~~~gs~ilvTtR~~~v~~~~~ 312 (576)
-++..-.+.+.+-+++-+|+-|.--- .+ ...|+- +..|. -+..|+.||++|.+..+...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444556677778899999886421 11 234543 22332 2346999999999988877663
No 282
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.78 E-value=0.014 Score=55.14 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=59.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHHH--
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLKK-- 260 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~~-- 260 (576)
.+++.|+|+.|.|||||.+.+...... . ....|+.... .. ...+.++...+...... .......-...+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999988742111 1 1112222111 11 11222223333322110 11111111122222
Q ss_pred hhcCCeEEEEEeCCCCCC-hhhh----hhhccCCCCC-CCCceEEEEecchHHHHhh
Q 045012 261 QLSGKKFLLVLDDVWNEN-YNSW----CTLSCPFGAG-ASGSKIVVTHRNQDVAATM 311 (576)
Q Consensus 261 ~l~~kr~LlVlDdv~~~~-~~~~----~~l~~~l~~~-~~gs~ilvTtR~~~v~~~~ 311 (576)
.+..++.|++||...... ..+. ..+...+... ..+..+|+||...+.+...
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 224678999999986532 1111 1223333322 2345799999988776654
No 283
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.05 Score=55.06 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK 246 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 246 (576)
..++-..|..+ --.-.++.|-|.||||||||..++..+ ....- .+++|+-.+ +..+ .+--++.|+.....
T Consensus 79 ~~EldRVLGGG----~V~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEE--S~~Q-iklRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGG----LVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEE--SLQQ-IKLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCC----cccccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCc--CHHH-HHHHHHHhCCCccc
Confidence 44555555332 134579999999999999999999884 33333 566665433 3322 23334555543322
Q ss_pred ----CCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 247 ----NDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 247 ----~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
...+++.+.+.+.+ .++-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 33455555555544 6889999999854
No 284
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.015 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 285
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.77 E-value=0.0077 Score=56.91 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+..+|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999873
No 286
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.76 E-value=0.057 Score=53.35 Aligned_cols=80 Identities=20% Similarity=0.136 Sum_probs=42.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccc--cceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF--EIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKK 260 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~ 260 (576)
..+.+|+|.|+.|+||||+|+.+..- ..... ..+..++...-......+... ..+........-+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999877541 21111 123344433322222222221 01111111244566777777776
Q ss_pred hhcCC
Q 045012 261 QLSGK 265 (576)
Q Consensus 261 ~l~~k 265 (576)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 66554
No 287
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.033 Score=50.78 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=59.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC--CCCC--CC--------CC-H
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN--DHSK--ND--------DD-L 251 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~~--~~--------~~-~ 251 (576)
-.+++|+|+.|.|||||.+.+.... ....+.+++.-....+.. ..+-..++. +... .. -+ -
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4689999999999999999998632 122344443211100000 111111110 0000 00 01 1
Q ss_pred HHHHHHHHHhhcCCeEEEEEeCCCC-CChhhhhhhccCCCCC-CCCceEEEEecchHHHH
Q 045012 252 NLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWCTLSCPFGAG-ASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 252 ~~l~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~ 309 (576)
+...-.+...+..++-++++|+.-. .+......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1122245566677888999999744 2222333333333221 23667888888876554
No 288
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.74 E-value=0.0073 Score=45.74 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++.|.|.+|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 289
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.74 E-value=0.045 Score=55.51 Aligned_cols=43 Identities=23% Similarity=0.121 Sum_probs=32.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|+...+.++.+.+..-. ....-|.|+|.+|+||+++|+.+++
T Consensus 2 iG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHH
Confidence 566666777776665442 2234578999999999999999986
No 290
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.73 E-value=0.013 Score=52.04 Aligned_cols=36 Identities=31% Similarity=0.159 Sum_probs=25.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 222 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 222 (576)
..+|.|+|.+|.||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 3434334444443
No 291
>PRK05439 pantothenate kinase; Provisional
Probab=95.69 E-value=0.079 Score=52.77 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=45.2
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhcc--ccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHH
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH--FEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLK 259 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~ 259 (576)
...+-+|+|.|.+|+||||+|+.+..- .... -..+.-++..+-+.....+..- ..+.....+..-+.+.+...|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 456789999999999999999888762 2221 1223344443333222222210 0111111124456677777777
Q ss_pred HhhcCCe
Q 045012 260 KQLSGKK 266 (576)
Q Consensus 260 ~~l~~kr 266 (576)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 7766664
No 292
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.69 E-value=0.031 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|.|+|.||+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999874
No 293
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.66 E-value=0.021 Score=54.53 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=35.1
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCCh
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDV 229 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 229 (576)
+..++++.+... ..+..+|+|+|+||+|||||...+....+...+--.++=|.-|.+++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG 73 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG 73 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC
Confidence 455666666543 245789999999999999999988875433322223333333444543
No 294
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.65 E-value=0.025 Score=51.98 Aligned_cols=22 Identities=45% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 295
>PRK06762 hypothetical protein; Provisional
Probab=95.62 E-value=0.0087 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 296
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.57 E-value=0.14 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+-|.|.|++|+||||+|+.++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHH
Confidence 4589999999999999999987
No 297
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.56 E-value=0.096 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+.+|.++|++|+||||++..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888753
No 298
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.55 E-value=0.025 Score=53.11 Aligned_cols=57 Identities=16% Similarity=0.373 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 130 SMMVSKMEEVTARLQDIERRKDLLNLKNVISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 130 ~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
+.+.+++..+++.++.+.+.+..-+ ++. ...+...|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-----~~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 9 RLIRERIAKLRRELEKVKKQRELQR------------------RRR-----KRSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH------------------Hhh-----hhcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 4566777777777777665543211 111 12345789999999999999999988753
No 299
>PRK06547 hypothetical protein; Provisional
Probab=95.54 E-value=0.017 Score=52.58 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+|.|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999863
No 300
>PRK04328 hypothetical protein; Provisional
Probab=95.54 E-value=0.036 Score=53.89 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
+.-.++.|.|++|+|||+|+.++... ....-...+|++...
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 35689999999999999999987753 223345678887765
No 301
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.52 E-value=0.039 Score=50.44 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999874
No 302
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.51 E-value=0.01 Score=55.97 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999863
No 303
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.091 Score=56.72 Aligned_cols=133 Identities=16% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
..++.+.++|++|.|||.||+++.+ ....+| +.+... +++... -......+...+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 4566899999999999999999998 222333 222211 111111 1122233444444555
Q ss_pred cCCeEEEEEeCCCCCC------h-----hhhhhhccCCCC--CCCCceEEEEecchHHHHh-h----hcccceecCCCCh
Q 045012 263 SGKKFLLVLDDVWNEN------Y-----NSWCTLSCPFGA--GASGSKIVVTHRNQDVAAT-M----RAVSGKTLKELSD 324 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~------~-----~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~ 324 (576)
+..+++|++|.++..- . .....++..+.. ...+..||-||..+..... + .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6789999999985410 0 122223333322 2233344555554433221 1 1235778888889
Q ss_pred HHHHHHHHHhhh
Q 045012 325 DDCLRVLIQHSL 336 (576)
Q Consensus 325 ~ea~~L~~~~~~ 336 (576)
++..+.|..+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999988865
No 304
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.041 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 305
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.47 E-value=0.028 Score=52.72 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHH---HHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLL---QEKLKK 260 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l---~~~l~~ 260 (576)
..+++.|.|+.|.||||+.+.+....- ..+ ...++.... ..-.+...|+..++.... ........ ...+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~-la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAI-MAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDS-MERNLSTFASEMSETAY 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HHH--cCCCcchhh--cCccChhheeEecCCccc-cchhhhHHHHHHHHHHH
Confidence 347899999999999999988864311 111 112221111 111333444444443321 11111111 111222
Q ss_pred h--hcCCeEEEEEeCCCCCC-hhh----hhhhccCCCCCCCCceEEEEecchHHHHhhh
Q 045012 261 Q--LSGKKFLLVLDDVWNEN-YNS----WCTLSCPFGAGASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 261 ~--l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 312 (576)
. +..++-|+++|...... ..+ ...+...+.. .|+.+|++|...+.+....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2 23567899999984421 111 1122333332 3788999999988877654
No 306
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.14 Score=55.70 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=58.1
Q ss_pred cccchhHHHHHHHHhcCCC------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
-|-++-+.+|.+-+.-+-. .+-.+..=|.++|++|.|||-||++|+.... .-|++|.++
T Consensus 675 GGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP-------- 739 (953)
T KOG0736|consen 675 GGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP-------- 739 (953)
T ss_pred cCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH--------
Confidence 4677777777766532100 0123356788999999999999999987321 235555543
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE 277 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 277 (576)
+++...-+ ...+...+...+.-..++|+|+||.+++.
T Consensus 740 ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHhc------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22222222 22233444444454668999999999763
No 307
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.42 E-value=0.0087 Score=49.81 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=18.6
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 308
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.39 E-value=0.024 Score=54.30 Aligned_cols=87 Identities=25% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhcc-ccceEEEEeCCCCChhHHHHHHHHhhhCCC--------------CCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-FEIKAWTCVSEDFDVSRVTQSILKSIANDH--------------SKN 247 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------------~~~ 247 (576)
+...++.|.|++|+|||+|+.++... .... =..++|++...+ ...+.+.+- +++... ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45689999999999999999887753 2222 345678876543 344443332 332110 001
Q ss_pred -----CCCHHHHHHHHHHhhcC-CeEEEEEeCC
Q 045012 248 -----DDDLNLLQEKLKKQLSG-KKFLLVLDDV 274 (576)
Q Consensus 248 -----~~~~~~l~~~l~~~l~~-kr~LlVlDdv 274 (576)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777766654 4478899986
No 309
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.39 E-value=0.046 Score=60.90 Aligned_cols=86 Identities=22% Similarity=0.171 Sum_probs=57.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
+.-+++-|+|++|+|||||+.+++.. ....-...+|+...+.++. ..+++++..... ...+.+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45688999999999999999887652 2233356788887776664 356666554321 334455555666
Q ss_pred HHhhc-CCeEEEEEeCCC
Q 045012 259 KKQLS-GKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l~-~kr~LlVlDdv~ 275 (576)
...+. ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 456789999984
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.33 E-value=0.08 Score=50.76 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
...++.|.|++|+|||||+.+++... .+.. ...++++. ..+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 34699999999999999987666532 1222 34566653 33455666555
No 311
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.86 Score=45.04 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=48.1
Q ss_pred cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhh-hcccceecCCCChHHHHHHHHH
Q 045012 263 SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATM-RAVSGKTLKELSDDDCLRVLIQ 333 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 333 (576)
.+++-++|+||++..+....+.++..+-...+++.+|++|.+. .+...+ +....+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3566799999999988888888888887655667666666554 344433 3446777766 66666666643
No 312
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.47 Score=45.01 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=36.0
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-|-++.++++++.+.-+.. -+-..++-+..+|++|.|||-+|++...
T Consensus 174 GGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 174 GGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred ccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 4788889998887643221 0245677889999999999999999886
No 313
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.31 E-value=0.083 Score=51.75 Aligned_cols=116 Identities=16% Similarity=0.031 Sum_probs=60.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC-------CCCCHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK-------NDDDLNLLQE 256 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-------~~~~~~~l~~ 256 (576)
...-++|+|++|.|||||.+.+.... ......+++.-. .....+-..++......-... ..++.....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~- 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAE- 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCE-EeecchhHHHHHHHhcccccccccccccccccchHHH-
Confidence 35689999999999999999998732 222333443211 111111112333222111100 011111111
Q ss_pred HHHHhh-cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 257 KLKKQL-SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 257 ~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
.+...+ ...+-+|++|.+... +.+..+...+. .|..+|+||....+..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 122222 257889999998543 34545544442 4778999999765543
No 314
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.30 E-value=0.047 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 315
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.019 Score=54.30 Aligned_cols=46 Identities=26% Similarity=0.172 Sum_probs=33.2
Q ss_pred ccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 162 GKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
|-.+++++|.+...-+-. -+-+.++-|.++|++|.|||-+|++|.|
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 456667777665432211 0245677889999999999999999998
No 316
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.26 E-value=0.039 Score=54.06 Aligned_cols=42 Identities=29% Similarity=0.193 Sum_probs=35.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED 226 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 226 (576)
+.-+++.|+|.+|+|||+++.++.. +...+...++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5668999999999999999999987 45566788999987653
No 317
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.26 E-value=0.074 Score=48.04 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=58.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhcc-ccceE--EEEeCCCCChhHHHHHHHH---hhhCCC--C--CCCCC---H
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-FEIKA--WTCVSEDFDVSRVTQSILK---SIANDH--S--KNDDD---L 251 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~--wv~~~~~~~~~~~~~~il~---~l~~~~--~--~~~~~---~ 251 (576)
...|-|++..|.||||.|..+.- +...+ +.+.+ |+--........++..+.- +.+... . +...+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 36788888899999999976655 22222 32221 2222212233334433200 011100 0 00111 1
Q ss_pred HHHHHHHHHhhcCC-eEEEEEeCCCCC---ChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 252 NLLQEKLKKQLSGK-KFLLVLDDVWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 252 ~~l~~~l~~~l~~k-r~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
....+..++.+... -=|+|||.+-.. ..-..+++...+.....+..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223334444444 459999998321 1122334445554455677999999985
No 318
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.064 Score=48.00 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=60.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
-.+++|+|..|.|||||.+.+.... ......+++......... .......+..... -..-+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQ--LSGGQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEee--CCHHHHHHHHHHHHHhc
Confidence 3689999999999999999998732 223444444321111100 0111111111110 11112222334555566
Q ss_pred CeEEEEEeCCCC-CChhhhhhhccCCCCC-CCCceEEEEecchHHHHh
Q 045012 265 KKFLLVLDDVWN-ENYNSWCTLSCPFGAG-ASGSKIVVTHRNQDVAAT 310 (576)
Q Consensus 265 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTtR~~~v~~~ 310 (576)
.+-++++|+... .+......+...+... ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 788999999754 2223333333332211 124678888887665554
No 319
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.26 E-value=0.072 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++|+|+.|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 320
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.25 E-value=0.14 Score=51.40 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=33.6
Q ss_pred ceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 316 GKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 316 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
++++.+++.+|+..++....-..-... ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887764432211 1223455667777779999654
No 321
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.24 E-value=0.014 Score=65.96 Aligned_cols=179 Identities=20% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLKK 260 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~~ 260 (576)
.+.+++.|+|+.+.||||+.+.+.-..- ......+|++.... ...++..|+..++..... ...+...-...+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 3457899999999999999988864210 11122233332111 111222222233322110 11111111122222
Q ss_pred hhc--CCeEEEEEeCCCCC-Chhhhhhh----ccCCCCCCCCceEEEEecchHHHHhhhcccceecCCCCh-HHHHHHHH
Q 045012 261 QLS--GKKFLLVLDDVWNE-NYNSWCTL----SCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKELSD-DDCLRVLI 332 (576)
Q Consensus 261 ~l~--~kr~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~-~ea~~L~~ 332 (576)
.+. ..+-|+++|..... ++.....+ ...+. ..|+.+|+||...++.........+....+.. .+... +.
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~ 477 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PT 477 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EE
Confidence 222 47789999998642 22222222 22232 24789999999987766543222111111111 11111 11
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccC
Q 045012 333 QHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVK 375 (576)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~ 375 (576)
... ..+.. -...+-.|++++ |+|-.+..-|.-+...
T Consensus 478 Ykl-~~G~~-----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 478 YRL-LIGIP-----GKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred EEE-eeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 111 11111 124567777777 7888777777666444
No 322
>PHA00729 NTP-binding motif containing protein
Probab=95.24 E-value=0.021 Score=53.85 Aligned_cols=25 Identities=44% Similarity=0.482 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+...+.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999873
No 323
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.23 E-value=0.18 Score=46.74 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=68.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC-------------------CCCC----------------
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-------------------EDFD---------------- 228 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~---------------- 228 (576)
.-.|++|+|++|.|||||.+-+.. ....=.+.+|+.-. +.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 347999999999999999988764 22222344554321 1111
Q ss_pred ---------hhHHHHHHHHhhhCCCC-----CCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC-ChhhhhhhccCCCC-C
Q 045012 229 ---------VSRVTQSILKSIANDHS-----KNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-NYNSWCTLSCPFGA-G 292 (576)
Q Consensus 229 ---------~~~~~~~il~~l~~~~~-----~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~ 292 (576)
..+...++++.++.... ..-+.-.+..-.+.+.|.=++-++.+|..-+. +++.-.+++..+.. .
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 11222333333333211 01122233344567777788889999998552 33333333322221 1
Q ss_pred CCCceEEEEecchHHHHhhh
Q 045012 293 ASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 293 ~~gs~ilvTtR~~~v~~~~~ 312 (576)
..|-..|+.|..-..|....
T Consensus 184 ~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 184 EEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HcCCeEEEEechhHHHHHhh
Confidence 34677788888776666543
No 324
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.23 E-value=0.12 Score=52.55 Aligned_cols=90 Identities=13% Similarity=0.043 Sum_probs=49.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
+.+++.++|+.||||||-...++........=..+..++... .....+-++.-.+-++.+.. ...+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 379999999999999985444443222112223445555432 22344555555555555544 445556665555433
Q ss_pred cCCeEEEEEeCCCC
Q 045012 263 SGKKFLLVLDDVWN 276 (576)
Q Consensus 263 ~~kr~LlVlDdv~~ 276 (576)
.+. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 333 4566677644
No 325
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.23 E-value=0.076 Score=50.85 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
..-.++.|.|.+|+|||+|+.++.... ...-...+|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 345799999999999999999876532 22334677887643
No 326
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.22 E-value=0.015 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..++|.|.|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999885
No 327
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.21 E-value=0.03 Score=48.26 Aligned_cols=41 Identities=24% Similarity=0.167 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 165 KDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
++..++.+.|.+.- ....++.+.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321 234689999999999999999999753
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.21 E-value=0.026 Score=54.66 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHH
Q 045012 168 EEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 168 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
.+|+..+... .++..+|+|+|.||+|||||...+.....-..+--.++=|.-|.+++--.++-+=
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 4455555432 4677899999999999999998888754333443344445556666655555443
No 329
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.19 E-value=0.038 Score=50.91 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 330
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.3 Score=52.85 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
..-|.++|++|.|||-||.++..... .-++++.++ +++...-+. ..+...+.+.+.-.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP--------ElL~KyIGa------SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP--------ELLSKYIGA------SEQNVRDLFERAQSA 759 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH--------HHHHHHhcc------cHHHHHHHHHHhhcc
Confidence 45688999999999999998886321 224566543 222222211 123333444445567
Q ss_pred CeEEEEEeCCCCCCh-----------hhhhhhccCCCC--CCCCceEEE-EecchHHHHhh-hc---ccceecCCCChHH
Q 045012 265 KKFLLVLDDVWNENY-----------NSWCTLSCPFGA--GASGSKIVV-THRNQDVAATM-RA---VSGKTLKELSDDD 326 (576)
Q Consensus 265 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ilv-TtR~~~v~~~~-~~---~~~~~l~~L~~~e 326 (576)
++|+|+||.+++..+ ....+++..+.. +-.|..|+. |||..-+-... .+ .+.+.-..-++.+
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999999999966321 122334444432 234666665 55543222211 11 1222333344555
Q ss_pred HHHHHHHhh
Q 045012 327 CLRVLIQHS 335 (576)
Q Consensus 327 a~~L~~~~~ 335 (576)
-.++|....
T Consensus 840 Rl~il~~ls 848 (952)
T KOG0735|consen 840 RLEILQVLS 848 (952)
T ss_pred HHHHHHHHh
Confidence 566665443
No 331
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.2 Score=49.39 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc-----------cccceEEEEeCCCCChhHHHHHH
Q 045012 168 EEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-----------HFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 168 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----------~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
++|...+.. +.-.....++|+.|+||+++|..+....--.. ..+...|+.-
T Consensus 7 ~~L~~~i~~-----~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p------------- 68 (290)
T PRK05917 7 EALIQRVRD-----QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP------------- 68 (290)
T ss_pred HHHHHHHHc-----CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-------------
Confidence 445555543 23457888999999999999988765211000 0111111100
Q ss_pred HHhhhCCCCCCCCCHHHHHHHHHHhh-----cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc-hHHHHh
Q 045012 237 LKSIANDHSKNDDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAAT 310 (576)
Q Consensus 237 l~~l~~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~ 310 (576)
......-..++..+ +.+.+ .++.-++|+|+++..+...+..++..+-...+++.+|++|.+ ..+...
T Consensus 69 ------~~~~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 69 ------QGKGRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ------CCCCCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 00000012333322 22222 345568899999998888888888888665566666666655 444433
Q ss_pred -hhcccceecCCC
Q 045012 311 -MRAVSGKTLKEL 322 (576)
Q Consensus 311 -~~~~~~~~l~~L 322 (576)
.+....+.+.++
T Consensus 142 I~SRcq~~~~~~~ 154 (290)
T PRK05917 142 IRSRSLSIHIPME 154 (290)
T ss_pred HHhcceEEEccch
Confidence 233455666654
No 332
>PRK04040 adenylate kinase; Provisional
Probab=95.15 E-value=0.016 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 333
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.15 E-value=0.011 Score=50.23 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEeecCcCcHHHHHHHHhcccchhcccc
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDDRVQRHFE 216 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 216 (576)
|.|+|.+|+|||++|+.+.. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999987 4445554
No 334
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.15 E-value=0.02 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999763
No 335
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.14 E-value=0.097 Score=48.53 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=27.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccc--------cceEEEEeCCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHF--------EIKAWTCVSED 226 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 226 (576)
.+..|.|++|+|||+++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588999999999999998887754332222 35667766554
No 336
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=54.01 Aligned_cols=88 Identities=23% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
...+++++|+.|+||||++..+............+..+.... .....+-+....+.++.+.. ...+..++...+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHHH-h
Confidence 457999999999999999988775321111222333333221 12233334444444444332 22333333333332 3
Q ss_pred cCCeEEEEEeCC
Q 045012 263 SGKKFLLVLDDV 274 (576)
Q Consensus 263 ~~kr~LlVlDdv 274 (576)
.++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 333 35666765
No 337
>PRK03839 putative kinase; Provisional
Probab=95.12 E-value=0.015 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=20.0
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 338
>PRK05973 replicative DNA helicase; Provisional
Probab=95.12 E-value=0.12 Score=49.39 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=32.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
.+-.++.|.|.+|+|||+++.++.... ...-..+++++... +..++...+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeC--CHHHHHHHH
Confidence 345789999999999999999887632 22233456665544 344444443
No 339
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.10 E-value=0.17 Score=49.46 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=48.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
+..+++++|.+|+||||++..+.... ...-..+.+++..... ....-++...+.++.+.. ...+...+.+.+...-
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHH
Confidence 34799999999999999998887632 2211234445443211 122222333333332221 2234445555444332
Q ss_pred c-CCeEEEEEeCCCCC
Q 045012 263 S-GKKFLLVLDDVWNE 277 (576)
Q Consensus 263 ~-~kr~LlVlDdv~~~ 277 (576)
. .+.=++++|..-..
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 2 24467888987543
No 340
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.10 E-value=0.035 Score=49.49 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=30.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 164 EKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 164 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+++|.++|. + +++.++|..|+|||||+..+..+
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 466888888883 2 79999999999999999999874
No 341
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.10 E-value=0.08 Score=56.01 Aligned_cols=98 Identities=19% Similarity=0.143 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK 246 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 246 (576)
...+-..|..+ -..-.++.|.|.+|+|||||+.+++... ...-..++|++..+ +...+.. -++.++.....
T Consensus 66 i~~LD~~LgGG----i~~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ee--s~~qi~~-ra~rlg~~~~~ 136 (446)
T PRK11823 66 IGELDRVLGGG----LVPGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEE--SASQIKL-RAERLGLPSDN 136 (446)
T ss_pred cHHHHHHhcCC----ccCCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccc--cHHHHHH-HHHHcCCChhc
Confidence 34455555322 2345799999999999999999988742 22223567776543 3333322 24444432211
Q ss_pred ----CCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 247 ----NDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 247 ----~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
...+.+.+.+.+.+ .+.-++|+|.+..
T Consensus 137 l~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 137 LYLLAETNLEAILATIEE---EKPDLVVIDSIQT 167 (446)
T ss_pred EEEeCCCCHHHHHHHHHh---hCCCEEEEechhh
Confidence 22445555554432 3567899999853
No 342
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.09 E-value=0.072 Score=52.08 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
+.-.++.|.|++|+|||+++.+++... ...-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 456899999999999999999986532 22334677887754
No 343
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.08 E-value=0.032 Score=48.86 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=27.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
++|.|+|+.|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999843 224455555666554
No 344
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.07 E-value=0.16 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||++.+..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 345
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.14 Score=56.91 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+++.++|+.|+||||++..++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 479999999999999999888864
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.14 Score=47.90 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhccc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
--+-+|-||.|.||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999999999999998764
No 347
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.06 E-value=0.018 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|+|++|+||||+|+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 348
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.05 E-value=0.07 Score=53.85 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 349
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.05 E-value=0.32 Score=52.18 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=34.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|+...+.++...+.... .....+.|+|.+|+|||++|+.+.+.
T Consensus 140 lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 140 IIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 4888888888877765432 23355889999999999999998873
No 350
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.04 E-value=0.14 Score=54.36 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK 246 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 246 (576)
...+-..|..+ -..-.++.|.|.+|+|||||+.++.... ...-..++|++..+ +..++.. -+..++.....
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEE--SLQQIKM-RAIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcC--CHHHHHH-HHHHcCCChHH
Confidence 44455555322 2455799999999999999999987632 22223467776543 3333222 22333322110
Q ss_pred ----CCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 247 ----NDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 247 ----~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
...+.+.+...+.+ .+.-++|+|.+..
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 22345555544433 3566899999854
No 351
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.03 E-value=0.06 Score=50.77 Aligned_cols=83 Identities=24% Similarity=0.349 Sum_probs=50.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhC-------CCCCCCCCHH----
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIAN-------DHSKNDDDLN---- 252 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~---- 252 (576)
-.-++|.|.+|+|||+|+..+.++.. -+..+++.+++.. ...++..++...-.. ... +.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~-~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS-DEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET-TS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccc-hhhHHHHhhh
Confidence 46789999999999999999987532 2334777776543 455555555433111 111 111111
Q ss_pred -----HHHHHHHHhhcCCeEEEEEeCC
Q 045012 253 -----LLQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 253 -----~l~~~l~~~l~~kr~LlVlDdv 274 (576)
...+.++. .++..|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 689999999998
No 352
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.02 E-value=0.063 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+...++.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999987
No 353
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.99 E-value=0.1 Score=48.76 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998864
No 354
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.018 Score=51.19 Aligned_cols=20 Identities=45% Similarity=0.703 Sum_probs=18.3
Q ss_pred EEEEeecCcCcHHHHHHHHh
Q 045012 187 VYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~ 206 (576)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.96 E-value=0.018 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++.|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 356
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.96 E-value=0.26 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|.|+.|.|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.91 E-value=0.11 Score=55.74 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHH
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 235 (576)
+..+-+.|..+ =..-.++.|.|++|+|||||+.++... ...+-..+++++..+ +..++...
T Consensus 249 i~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred hHhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 34455555432 245689999999999999999998873 323334566665543 44455444
No 358
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.91 E-value=0.03 Score=51.58 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=27.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEE
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 222 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 222 (576)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999987 3445565444444
No 359
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.90 E-value=0.17 Score=48.85 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=35.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.-.++.|.|.+|+|||+++.+++.+... .+-..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4469999999999999999988764322 2123556665544 556666666543
No 360
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.89 E-value=0.017 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 361
>PRK15453 phosphoribulokinase; Provisional
Probab=94.89 E-value=0.15 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998875
No 362
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.88 E-value=0.11 Score=54.98 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=46.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+++++|+.|+||||++..++...........+..+.... .....+-++...+.++.... ...+..+....+. .+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL~-~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLALS-ELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHHH-hcc
Confidence 47999999999999999999987432222122334444322 12333444444555544332 1122222222222 334
Q ss_pred CCeEEEEEeCCC
Q 045012 264 GKKFLLVLDDVW 275 (576)
Q Consensus 264 ~kr~LlVlDdv~ 275 (576)
++ -.+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 44 466777764
No 363
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.88 E-value=1.3 Score=46.67 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=38.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
+-.++.|.|.+|+|||++|..+..+......+ .++|++ -..+..++...++....
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASKS 247 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHHc
Confidence 44688999999999999999988643222222 345554 44577788888776544
No 364
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.019 Score=52.93 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhccc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
..+|+|-||-|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999843
No 365
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.87 E-value=0.017 Score=53.22 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.3
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 366
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.85 E-value=0.022 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 367
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.82 E-value=0.04 Score=55.18 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=42.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|-++.+++|++.+.....+.+..-+++.+.||.|.|||||+..+.+
T Consensus 63 ~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 63 FYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999876554567789999999999999999998876
No 368
>PRK00625 shikimate kinase; Provisional
Probab=94.81 E-value=0.019 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 369
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.81 E-value=0.035 Score=56.67 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=61.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.|.|+.|.||||+...+.+. +.......++. +.++... ..... ..+..... ...+.....+.++..+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhcc
Confidence 368999999999999999988762 33334444443 2222111 00000 00000000 111122355667778888
Q ss_pred CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHH
Q 045012 265 KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA 308 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 308 (576)
.+=+|++|.+.+. +.+...... ...|..++.|.......
T Consensus 195 ~pd~i~vgEird~--~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 DPDVILIGEMRDL--ETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCCEEEEeCCCCH--HHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 9999999999654 344332222 22455566666654443
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.79 E-value=0.019 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998873
No 371
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.79 E-value=0.07 Score=48.92 Aligned_cols=119 Identities=18% Similarity=0.110 Sum_probs=60.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC---CCChhHHHHHHH--H--hhhCCC--C--CCCCCH--
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE---DFDVSRVTQSIL--K--SIANDH--S--KNDDDL-- 251 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il--~--~l~~~~--~--~~~~~~-- 251 (576)
...|.|+|..|-||||+|..+.- +...+-..+..+.+-. .......+..+- . ..+... . ....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999966654 2223222233333322 223333333310 0 001110 0 011111
Q ss_pred -HHHHHHHHHhhcC-CeEEEEEeCCCCC---ChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 252 -NLLQEKLKKQLSG-KKFLLVLDDVWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 252 -~~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
....+..++.+.+ +-=|+|||.+-.. ..-..+++...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122333444444 4459999998331 1123344555555555677999999975
No 372
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.78 E-value=0.027 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++++|+|..|+|||||++.+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35679999999999999999999873
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.76 E-value=0.12 Score=50.79 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC------CCCCHHHHH
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK------NDDDLNLLQ 255 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------~~~~~~~l~ 255 (576)
..+..++.|.|.+|+|||||...+.+. ...... .+.+ ..+..+..+ .+.+...+.+... --.+...+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~ 174 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIA 174 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHH
Confidence 356799999999999999999999873 223332 2222 222222222 2223333221100 112334455
Q ss_pred HHHHHhhcCCeEEEEEeCCCC
Q 045012 256 EKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 256 ~~l~~~l~~kr~LlVlDdv~~ 276 (576)
..+........-+||++++-+
T Consensus 175 ~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 175 DAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHhhcCCcEEEEECCCC
Confidence 555555444456788999854
No 374
>PRK05595 replicative DNA helicase; Provisional
Probab=94.76 E-value=2.6 Score=44.82 Aligned_cols=56 Identities=21% Similarity=0.103 Sum_probs=38.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
+-.++.|-|.+|+|||++|..+..+....... .++|+ +-..+..++...++.....
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~-~vl~f--SlEms~~~l~~R~~a~~~~ 255 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALREGK-SVAIF--SLEMSKEQLAYKLLCSEAN 255 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHHcCC-cEEEE--ecCCCHHHHHHHHHHHhcC
Confidence 44688899999999999999887643222222 34454 4455777888887776543
No 375
>PF13245 AAA_19: Part of AAA domain
Probab=94.72 E-value=0.052 Score=41.91 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=16.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~ 206 (576)
.+++.|.|++|.|||+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3678889999999995554443
No 376
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.71 E-value=0.099 Score=50.86 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccch--hccccceEEEEeCCCC-ChhHHHHHHHHhhhCCCC------CCCCCHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRV--QRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDHS------KNDDDLNLL 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~------~~~~~~~~l 254 (576)
.-+-++|.|-+|+|||+|+..+.++... +.+-+..+++-+++.. ...+++.++...=..... .+.......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998875321 1224567788777654 455666666553211110 011111111
Q ss_pred -----HHHHHHhh---cCCeEEEEEeCCC
Q 045012 255 -----QEKLKKQL---SGKKFLLVLDDVW 275 (576)
Q Consensus 255 -----~~~l~~~l---~~kr~LlVlDdv~ 275 (576)
.-.+.+++ .++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11233444 3789999999984
No 377
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.68 E-value=0.036 Score=52.83 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLKKQ 261 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~~~ 261 (576)
+.+++.|+|+.|.||||+.+.+.... + .+....+|.... ........++..++..... .......-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~-~--la~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIV-L--MAQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H--HHHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 45799999999999999998876421 0 111112222211 1111223333333322210 111122222223333
Q ss_pred h--cCCeEEEEEeCCCCC----Ch--hhhhhhccCCCCCCCCceEEEEecchHHHHhhh
Q 045012 262 L--SGKKFLLVLDDVWNE----NY--NSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 262 l--~~kr~LlVlDdv~~~----~~--~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 312 (576)
+ ...+-|++||..... +. ..|. +...+.. ..|+.+|+||...++...+.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3 356889999998321 11 1222 1122322 24678999999776665443
No 378
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.67 E-value=0.025 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++++|+|++|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 379
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.67 E-value=0.15 Score=46.96 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=57.7
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHHHhhcC
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~~~l~~ 264 (576)
++.|+|+.|.||||+.+.+.-.... .+-. .++.... .....+..++..++..... .......-...+...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G--~~v~a~~--~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIG--SFVPAES--AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhC--CCeeehh--eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 4679999999999999998743211 1111 1111110 0001111122222211110 111222222334444443
Q ss_pred --CeEEEEEeCCCCC-Chhhh----hhhccCCCCCCCCceEEEEecchHHHHhhh
Q 045012 265 --KKFLLVLDDVWNE-NYNSW----CTLSCPFGAGASGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 265 --kr~LlVlDdv~~~-~~~~~----~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 312 (576)
++-|+++|..-.. +...- ..+...+.. ..++.+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 7899999998542 11111 122222221 13678999999887766543
No 380
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.66 E-value=0.066 Score=54.78 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=49.2
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHh
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
...++=+-|||..|.|||-|...+|+...+... .....-....++-+.+..... ....+.. +.+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~----va~~ 123 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRG-QDDPLPQ----VADE 123 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhC-CCccHHH----HHHH
Confidence 346788999999999999999999985433111 111222344444444433221 2333333 3344
Q ss_pred hcCCeEEEEEeCCCCCCh
Q 045012 262 LSGKKFLLVLDDVWNENY 279 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~ 279 (576)
+.++..||.||.+.-.+.
T Consensus 124 l~~~~~lLcfDEF~V~Di 141 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDI 141 (362)
T ss_pred HHhcCCEEEEeeeeccch
Confidence 456677999999865543
No 381
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.65 E-value=0.03 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 382
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.61 E-value=0.12 Score=53.97 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh-----CCCCCCCCCHH------
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA-----NDHSKNDDDLN------ 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-----~~~~~~~~~~~------ 252 (576)
.-..++|+|.+|+|||||++.+.... .....+++..-.+.-++.++....+.... .-...+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34689999999999999998887532 12223444433233445444444433321 11110111111
Q ss_pred ---HHHHHHHHhhcCCeEEEEEeCCC
Q 045012 253 ---LLQEKLKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 253 ---~l~~~l~~~l~~kr~LlVlDdv~ 275 (576)
...+.++. +++.+|+++||+-
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccchH
Confidence 12233332 4889999999983
No 383
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.58 E-value=0.024 Score=51.37 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=18.2
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 384
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.036 Score=52.09 Aligned_cols=47 Identities=30% Similarity=0.196 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHhcCC-------CCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 162 GKEKDKEEIVELLLRDD-------LRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
|-+-.++++.+...-+- ..+-+.++-|.++|++|.|||-||++|.++
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 55555666555432111 013456788899999999999999999985
No 385
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.57 E-value=0.027 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEeecCcCcHHHHHHHHhccc
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~ 209 (576)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 386
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.57 E-value=0.2 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|.|+.|.|||||.+.+..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999886
No 387
>PRK05748 replicative DNA helicase; Provisional
Probab=94.56 E-value=2.1 Score=45.54 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.+-.++.|-|.+|+|||++|..+..+...... ..++++ +-..+..++...++...+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~f--SlEms~~~l~~R~l~~~~ 256 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIF--SLEMGAESLVMRMLCAEG 256 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEE--eCCCCHHHHHHHHHHHhc
Confidence 34568999999999999999988864322222 234444 445567778888776554
No 388
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.56 E-value=0.13 Score=53.82 Aligned_cols=90 Identities=22% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l-- 254 (576)
.-.-++|.|.+|+|||||+.++..+... .+=..++++-+++.. .+.+++.+++..=.... ..+.+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4467899999999999999988764221 112356666666544 45566666665321110 0011122211
Q ss_pred ---HHHHHHhh---cCCeEEEEEeCC
Q 045012 255 ---QEKLKKQL---SGKKFLLVLDDV 274 (576)
Q Consensus 255 ---~~~l~~~l---~~kr~LlVlDdv 274 (576)
.-.+.+++ +++.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 12234444 679999999998
No 389
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.50 E-value=0.13 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+..++.++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999998874
No 390
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.48 E-value=0.14 Score=53.35 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=50.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCCC------CCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDHS------KNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~------~~~~~~~~l-- 254 (576)
.-..++|.|..|+|||||++.+.+.. ..+..+.+-+++.. .+.++...++..-+.... .+.......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998632 22455556566544 344555555443211110 011111111
Q ss_pred ---HHHHHHhh--cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l--~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++.+||++||+-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 11123333 5899999999983
No 391
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.48 E-value=0.042 Score=50.66 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=29.8
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHH
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 235 (576)
++.|.|++|+|||+|+.++.... ...-..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999887632 22234567776643 34444433
No 392
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.48 E-value=0.031 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+..++.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999873
No 393
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.44 E-value=0.032 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+++|+|++|+|||||++.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999999873
No 394
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.76 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
|--.++||||.|||+++.+++|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 45679999999999999999984
No 395
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.42 E-value=0.11 Score=54.60 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHH---
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNL--- 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~--- 253 (576)
.-.-++|.|.+|+|||||+.++.++... .+-+..+++-+++.. .+.+++.++...-.... ..+.+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4467899999999999999888875332 245667777666544 45556666654321111 001111111
Q ss_pred --HHHHHHHhh---cCCeEEEEEeCCC
Q 045012 254 --LQEKLKKQL---SGKKFLLVLDDVW 275 (576)
Q Consensus 254 --l~~~l~~~l---~~kr~LlVlDdv~ 275 (576)
..-.+.+++ .++.+||++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 112234444 3789999999993
No 396
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.41 E-value=0.2 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++|.|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998753
No 397
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.38 E-value=0.11 Score=53.57 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=32.2
Q ss_pred cccchhHHHHHHHHhcC--------CCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRD--------DLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.++.++.+.-.+... .......++-|.++|++|+|||++|+.+...
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 66666666665444321 0001224578899999999999999999873
No 398
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.37 E-value=0.027 Score=49.59 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 399
>PRK05636 replicative DNA helicase; Provisional
Probab=94.35 E-value=2 Score=46.25 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=37.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.+-.++.|.|.+|+|||++|..++.+...+.... +++ +|-..+..++...++....
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~-v~~--fSlEMs~~ql~~R~ls~~s 318 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKA-SVI--FSLEMSKSEIVMRLLSAEA 318 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCe-EEE--EEeeCCHHHHHHHHHHHhc
Confidence 3456889999999999999998876433333332 222 2555677778877776653
No 400
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.086 Score=47.11 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++..+|.++|.+|.||||+|..+..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 401
>PRK06217 hypothetical protein; Validated
Probab=94.29 E-value=0.03 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.|.|.+|+||||||+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 402
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.28 E-value=0.15 Score=53.00 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=47.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCC------CCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHS------KNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~------~~~~~~~~l-- 254 (576)
.-..++|.|..|+|||||++.+..... . +....+.+.. .-.+.++....+..-+.... .+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999998886322 1 2222232332 33344555544433221110 011111111
Q ss_pred ---HHHHHHhh--cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l--~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++.+||++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11233333 5789999999983
No 403
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.27 E-value=0.15 Score=55.26 Aligned_cols=43 Identities=21% Similarity=0.044 Sum_probs=32.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|....+.++.+.+.... ..-.-|.|+|..|+||+.+|+.+.+
T Consensus 207 ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 207 VAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred eECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHH
Confidence 788888888877765432 1223478999999999999999865
No 404
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.25 E-value=0.043 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999999999875
No 405
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.24 E-value=0.039 Score=48.70 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999987765
No 406
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.031 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+-|.|+|.||+|||||+..+..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 346788999999999999999985
No 407
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.23 E-value=0.037 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 408
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.22 E-value=0.067 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=16.1
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+..|+|++|.|||+++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 789999999999987766665
No 409
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.20 E-value=0.43 Score=46.49 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=68.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
+.+.|+|.+|+|||+-++.+++. .+..+.+..++.++...+...+........ ..........+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~---~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT---DGTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHccC
Confidence 48899999999999999999873 233444556677777777777766665543 244555566666777888
Q ss_pred eEEEEEeCCCCCChhhhhhhccCCC
Q 045012 266 KFLLVLDDVWNENYNSWCTLSCPFG 290 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~l~~~l~ 290 (576)
.-+|+.|+........++.+.....
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHH
Confidence 8999999988776666666655443
No 410
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.20 E-value=0.042 Score=52.33 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=38.6
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceE-------EEEeCCCCChhHH--HHHHHHhhhCCCC
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKA-------WTCVSEDFDVSRV--TQSILKSIANDHS 245 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-------wv~~~~~~~~~~~--~~~il~~l~~~~~ 245 (576)
.+++.+|.++||+|.||||..+.++.+...+..-+.++ =+...-+.++++. +++.+++.+..+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 35677889999999999999999987543322211111 1112233345443 4667777665443
No 411
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.19 E-value=0.27 Score=49.38 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC-CCCChhHHHHHHHHhhhCCC------CCCCCCHH----
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-EDFDVSRVTQSILKSIANDH------SKNDDDLN---- 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~------~~~~~~~~---- 252 (576)
.-..++|+|..|.|||||.+.+..... -+......+. +.-++.++....+..-+... ..+.....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999998887322 1233334443 23345555555554322111 00111111
Q ss_pred -----HHHHHHHHhhcCCeEEEEEeCCC
Q 045012 253 -----LLQEKLKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 253 -----~l~~~l~~~l~~kr~LlVlDdv~ 275 (576)
...+.++. +++.+||++||+-
T Consensus 144 ~~~a~~~AEyfr~--~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFRD--QGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEeccch
Confidence 12233332 5889999999983
No 412
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.16 E-value=0.18 Score=52.55 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCC-------CCCCCCHHH---
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDH-------SKNDDDLNL--- 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~~~~~~~~~--- 253 (576)
.-..++|.|..|+|||||++.++..... ....+...-.+.....+++...+..-+... ...+.....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999874321 122222222233556666665554422111 101111111
Q ss_pred -HHHHHHHhh--cCCeEEEEEeCCCC
Q 045012 254 -LQEKLKKQL--SGKKFLLVLDDVWN 276 (576)
Q Consensus 254 -l~~~l~~~l--~~kr~LlVlDdv~~ 276 (576)
....+.+++ ++++.||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 111222232 47899999999844
No 413
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.15 E-value=0.16 Score=55.32 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++-..++|+|+.|.|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999875
No 414
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.14 E-value=0.11 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.066 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-.-..|+|++|+|||||++.+.+.
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~ 439 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANA 439 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHH
Confidence 34467889999999999999999883
No 415
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.14 E-value=0.035 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 416
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.22 Score=48.04 Aligned_cols=26 Identities=35% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-..++-|.++|.+|.|||-||++|+|
T Consensus 216 ikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 216 IKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred CCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 35567788999999999999999999
No 417
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.11 E-value=0.039 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++.|+|++|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999763
No 418
>PRK13947 shikimate kinase; Provisional
Probab=94.11 E-value=0.035 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 419
>PLN02348 phosphoribulokinase
Probab=94.10 E-value=0.23 Score=50.86 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+.+.+|+|.|.+|.||||+|+.+.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999873
No 420
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.06 E-value=0.039 Score=51.97 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..++++++++|+.|+|||||..++.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998873
No 421
>PRK14530 adenylate kinase; Provisional
Probab=94.05 E-value=0.038 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 422
>PRK14527 adenylate kinase; Provisional
Probab=94.04 E-value=0.043 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++.|+|++|+||||+|+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998763
No 423
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.04 E-value=0.16 Score=49.06 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=41.8
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC--ChhHHHHHHHHhh----hCCC-CCCCCCHHHHHHHHH
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF--DVSRVTQSILKSI----ANDH-SKNDDDLNLLQEKLK 259 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l----~~~~-~~~~~~~~~l~~~l~ 259 (576)
+|+|.|.+|+||||+++.+.... ...-.....++...-. +-...-..+.... +-.. .+..-+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999887632 2111122333322111 2122222222211 1111 125567778888888
Q ss_pred HhhcCCe
Q 045012 260 KQLSGKK 266 (576)
Q Consensus 260 ~~l~~kr 266 (576)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7776654
No 424
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.04 E-value=0.32 Score=51.32 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccchh-----ccccceEEEEeCCCCChhHHHHHHHHhhhC-CCCC------CCCC
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRVQ-----RHFEIKAWTCVSEDFDVSRVTQSILKSIAN-DHSK------NDDD 250 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~------~~~~ 250 (576)
.-.-++|.|..|+|||+|| ..+.+...+. .+-...+++.+++..+...-+.+.++.-+. .... ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 6666643221 233456778887765433334444443331 1100 1111
Q ss_pred HH---------HHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 251 LN---------LLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 251 ~~---------~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
.. .+.+.++. +++..|||+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 11 12233332 57899999999843
No 425
>PRK13949 shikimate kinase; Provisional
Probab=94.02 E-value=0.037 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 426
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.02 E-value=0.11 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 427
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.99 E-value=0.085 Score=52.84 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=32.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
.+++.+.|-|||||||+|.+..- ........++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999987554 2333334466666655555544443
No 428
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.99 E-value=0.033 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.5
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998873
No 429
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.98 E-value=0.11 Score=52.95 Aligned_cols=62 Identities=24% Similarity=0.150 Sum_probs=43.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
.+|++.....+...+... +-+.+.|++|+|||+||+.+... .. ....++.+.......+++.
T Consensus 26 ~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcC
Confidence 378888888877777654 35789999999999999999873 22 2334556665555554443
No 430
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.98 E-value=0.046 Score=55.23 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHhhcCCeEEEEEeCCCCC-ChhhhhhhccCCCC--CCCCceEEEEecchHHHHhhhcc
Q 045012 255 QEKLKKQLSGKKFLLVLDDVWNE-NYNSWCTLSCPFGA--GASGSKIVVTHRNQDVAATMRAV 314 (576)
Q Consensus 255 ~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~~~ 314 (576)
..+|...+.+++-+++.|.+... +...--.+...+.. ...|+.+++.|+.+++.+.+.+.
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 34577788888889999987442 11111112222222 12577778877778887776543
No 431
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.67 Score=45.01 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=88.7
Q ss_pred cccchhHHHHHHHHhcCC------CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDD------LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
-|-+...+.|.+...-+- .......+-|.++|++|.||+.||++|+... ... |.++|..
T Consensus 136 AGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSS-------- 200 (439)
T KOG0739|consen 136 AGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSS-------- 200 (439)
T ss_pred ccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehH--------
Confidence 577777777776543211 0123457889999999999999999998732 122 2333321
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCC------C-hhhhhh----hccCC---CCCCCCceEE
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNE------N-YNSWCT----LSCPF---GAGASGSKIV 299 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~------~-~~~~~~----l~~~l---~~~~~gs~il 299 (576)
++.....+ ..+.+...|.+.- .+++-+|++|.++.. + .+.-.. ++... .....|.-||
T Consensus 201 DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 201 DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 11221111 1233444444333 468999999998541 0 111111 11122 2223455555
Q ss_pred EEecchHHHHhh-h--cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 300 VTHRNQDVAATM-R--AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 300 vTtR~~~v~~~~-~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
-.|..+-+.... . ....| .-||++..|..-+.+...+... +...+.-.+++.++..|.
T Consensus 274 gATNiPw~LDsAIRRRFekRI-YIPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRI-YIPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGY 334 (439)
T ss_pred ecCCCchhHHHHHHHHhhcce-eccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCC
Confidence 567665333221 1 11222 2367777776554444334322 122233455566666664
No 432
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.13 Score=50.03 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-..+..+.|||++|.|||-||+.|+.
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa 188 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAA 188 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHH
Confidence 35678999999999999999999997
No 433
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.44 Score=51.44 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=54.0
Q ss_pred cccchhH---HHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDK---EEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~---~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
-|.++.+ .++++.|..+.. -+..-++-+.++|++|.|||.||+++.....+- +.+.|..
T Consensus 153 AG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP-------Ff~iSGS-------- 217 (596)
T COG0465 153 AGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGS-------- 217 (596)
T ss_pred cCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC-------ceeccch--------
Confidence 5776554 455556654321 012446778999999999999999999843321 1222221
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
+..+..- ........+...+..++-+++|++|.++.
T Consensus 218 ~FVemfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDA 253 (596)
T COG0465 218 DFVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDA 253 (596)
T ss_pred hhhhhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhh
Confidence 1111111 11122333444555566789999998854
No 434
>PRK08149 ATP synthase SpaL; Validated
Probab=93.96 E-value=0.16 Score=52.86 Aligned_cols=86 Identities=16% Similarity=0.282 Sum_probs=49.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC-CCCChhHHHHHHHHhhhCCC------CCCCCCHH----
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS-EDFDVSRVTQSILKSIANDH------SKNDDDLN---- 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~------~~~~~~~~---- 252 (576)
.-..++|+|.+|+|||||...+++... -+..+...+. +.-++.++..+.+....... ..+.+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346889999999999999999987322 1222333333 23345566666655322111 00111111
Q ss_pred -----HHHHHHHHhhcCCeEEEEEeCCC
Q 045012 253 -----LLQEKLKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 253 -----~l~~~l~~~l~~kr~LlVlDdv~ 275 (576)
...+.++. +++++||++||+-
T Consensus 226 ~~~a~tiAE~fr~--~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRD--QGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEccchH
Confidence 12223332 4899999999983
No 435
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.96 E-value=0.076 Score=53.17 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+++.+.|-||+||||+|....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6899999999999999977665
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.95 E-value=0.048 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..++.|.|++|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999984
No 437
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.95 E-value=0.058 Score=48.18 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=25.1
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEE
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTC 222 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 222 (576)
++.|+|+.|+|||||+..+....+. ..+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 5789999999999999999884321 2344444443
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.95 E-value=0.086 Score=49.38 Aligned_cols=21 Identities=52% Similarity=0.792 Sum_probs=18.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999988554
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.91 E-value=0.054 Score=44.66 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=19.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~ 206 (576)
-..++|.|++|.|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999998875
No 440
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.86 E-value=0.09 Score=44.54 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-++.|...+... ...++-|++.+|.+|+|||.+++.++++
T Consensus 37 v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 37 VVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 344445555443 3567889999999999999999888775
No 441
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.85 E-value=0.042 Score=48.86 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.6
Q ss_pred EEEeecCcCcHHHHHHHHhc
Q 045012 188 YSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~ 207 (576)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999986
No 442
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.84 E-value=0.37 Score=51.44 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++|+|+.|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 443
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.82 E-value=0.25 Score=51.55 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC-CChhHHHHHHHHhhhCCC------CCCCCCHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED-FDVSRVTQSILKSIANDH------SKNDDDLNLLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~l~ 255 (576)
..-..++|.|..|+|||||.+.+.+.. +.+..++..++.. ..+.+++.+....=.... ..+........
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 344688999999999999999888632 2344555555543 334455555432110000 00111121111
Q ss_pred -----HHHHHhh--cCCeEEEEEeCCC
Q 045012 256 -----EKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 256 -----~~l~~~l--~~kr~LlVlDdv~ 275 (576)
-.+.+++ +++++||++||+-
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1123333 4889999999993
No 444
>PRK08506 replicative DNA helicase; Provisional
Probab=93.82 E-value=3.2 Score=44.35 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
.+..++.|-|.+|+|||++|..+..+.. .... .++++ |-..+..++...++.....
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~-~~g~-~V~~f--SlEMs~~ql~~Rlla~~s~ 245 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKAL-NQDK-GVAFF--SLEMPAEQLMLRMLSAKTS 245 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHH-hcCC-cEEEE--eCcCCHHHHHHHHHHHhcC
Confidence 3456899999999999999998886532 2222 34444 4456788888888776543
No 445
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.79 E-value=0.2 Score=52.44 Aligned_cols=91 Identities=15% Similarity=0.226 Sum_probs=54.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l-- 254 (576)
.-.-++|.|.+|+|||+|+.++..+.. +.+-+..+++-++... ...+++.++...-.... ..+.+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 446789999999999999999877532 2234677788777654 34556665554311110 0011111111
Q ss_pred ---HHHHHHhh---cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL---SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l---~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++++||++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 12234444 4689999999983
No 446
>PRK05922 type III secretion system ATPase; Validated
Probab=93.77 E-value=0.35 Score=50.43 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC-CChhHHHHHHHHhhhCCCCC------CCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED-FDVSRVTQSILKSIANDHSK------NDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~------~~~~~~~l-- 254 (576)
.-..++|+|..|+|||||.+.+.... ..+....+.++.. ....+.+.+........... +.......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998632 1233333333332 23344554444333221110 11111111
Q ss_pred ---HHHHHHhh--cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l--~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++++||++||+-
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11233333 4899999999993
No 447
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.46 Score=43.10 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 5788999999999999999875
No 448
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.75 E-value=0.21 Score=48.45 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=53.4
Q ss_pred HHHHHHHHhhHHH-HH-hhhchHHHHHHHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHhhcHHHHHHHHH
Q 045012 12 FELLIKKLASLEL-FT-QHEKLKAGFLKWKDNMEMIQAVLADA-DDRQTNDKSVKKWLDMLQNLAYDVEDILDEFE 84 (576)
Q Consensus 12 ~~~l~~~l~~~~~-~~-~~~~v~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~v~~Wl~~lr~~ayd~eD~lD~~~ 84 (576)
++-+++.|..... |. ...-++.+++-++.+++++|.||+.. ++.+......+....++-..||++|+++|...
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 4445555554433 21 12236899999999999999999987 44343334489999999999999999999883
No 449
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.74 E-value=0.29 Score=51.16 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=49.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l-- 254 (576)
.-..++|+|..|+|||||++.+++... .+..+++-++... .+.++..+.+..-+... ..+.......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 446889999999999999999987322 2344555555544 34455544444322110 0011111111
Q ss_pred ---HHHHHHhh--cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l--~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11123333 5899999999993
No 450
>COG4240 Predicted kinase [General function prediction only]
Probab=93.72 E-value=0.25 Score=45.98 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=52.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC----CCCCCCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN----DHSKNDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~----~~~~~~~~~~~l~~~l 258 (576)
+.+-+++|.|+-|.||||++..+++....+.- ..++..++.+-+-...-...++++... .......+..-+.+.|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45789999999999999999999885333322 355555554433333333344444321 1122456777777888
Q ss_pred HHhhcCCeE
Q 045012 259 KKQLSGKKF 267 (576)
Q Consensus 259 ~~~l~~kr~ 267 (576)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 887777644
No 451
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.05 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|.+|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999864
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.71 E-value=0.043 Score=49.51 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=16.8
Q ss_pred EEEeecCcCcHHHHHHHHhc
Q 045012 188 YSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~ 207 (576)
|+|+|.+|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 453
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.70 E-value=0.14 Score=49.82 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=48.4
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccchhccccce-EEEEeCCCC-ChhHHHHHHHHhhhCC-------CCCCCCCH--
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEIK-AWTCVSEDF-DVSRVTQSILKSIAND-------HSKNDDDL-- 251 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~-- 251 (576)
.-+-++|.|.+|+|||+|| ..+.+. ..-+.. +++-+++.. ...++..++...-... ..+++...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 556552 122344 555555543 4555666555432111 11011111
Q ss_pred ------HHHHHHHHHhhcCCeEEEEEeCCC
Q 045012 252 ------NLLQEKLKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 252 ------~~l~~~l~~~l~~kr~LlVlDdv~ 275 (576)
-.+.+.++. +++.+||++||+-
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslT 171 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChH
Confidence 122333333 4789999999994
No 454
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.69 E-value=0.13 Score=47.77 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 455
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.68 E-value=0.054 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...|.|+|+.|+||||+++.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999873
No 456
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.67 E-value=0.26 Score=44.70 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=44.6
Q ss_pred EEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC--CCCCCHHHHHHHHHHhhcCC
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS--KNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~l~~~l~~~l~~k 265 (576)
+.|.|.+|+|||++|.++... .....+++.-...++. ++...|.......+. ...+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999998753 2235667766666654 344444332222211 1122233344444322 2 2
Q ss_pred eEEEEEeCC
Q 045012 266 KFLLVLDDV 274 (576)
Q Consensus 266 r~LlVlDdv 274 (576)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347899987
No 457
>PRK13975 thymidylate kinase; Provisional
Probab=93.67 E-value=0.049 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 458
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.67 E-value=0.11 Score=50.87 Aligned_cols=82 Identities=12% Similarity=0.207 Sum_probs=45.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
-.++.|.|+.|.||||++..+.+. +.. ....+ +.+.++.... +.. ..++..... .. ....+.++..++.
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~~-~~---~~~~~~l~~~lR~ 148 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNEK-AG---LTFARGLRAILRQ 148 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCC-CCCeE-EEECCCceec--CCC-ceEEEeCCc-CC---cCHHHHHHHHhcc
Confidence 368999999999999999888652 211 11111 2232221110 000 011111110 11 1345667777888
Q ss_pred CeEEEEEeCCCCC
Q 045012 265 KKFLLVLDDVWNE 277 (576)
Q Consensus 265 kr~LlVlDdv~~~ 277 (576)
.+=.|+++++.+.
T Consensus 149 ~PD~i~vgEiR~~ 161 (264)
T cd01129 149 DPDIIMVGEIRDA 161 (264)
T ss_pred CCCEEEeccCCCH
Confidence 8889999999764
No 459
>PLN02200 adenylate kinase family protein
Probab=93.66 E-value=0.053 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 460
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.65 E-value=0.16 Score=52.32 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHhcC--------CCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRD--------DLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..++.+..++... .......++.+.++|++|+|||+||+.+...
T Consensus 18 iGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 18 IGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 67777777776666331 0001122477899999999999999999873
No 461
>PRK13948 shikimate kinase; Provisional
Probab=93.64 E-value=0.061 Score=49.36 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.....|.++|+.|+||||+++.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999987
No 462
>PLN02796 D-glycerate 3-kinase
Probab=93.63 E-value=0.63 Score=46.91 Aligned_cols=26 Identities=31% Similarity=0.160 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+-+|+|.|..|.|||||++.+...
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999999998863
No 463
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.63 E-value=0.23 Score=55.51 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|....+.++.+.+.... ....-|.|+|..|+||+++|+.+.+.
T Consensus 327 l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 327 MPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred eEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3788888888887776543 12234789999999999999999873
No 464
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.62 E-value=0.054 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.8
Q ss_pred cEEEEeecCcCcHHHHHHHHh
Q 045012 186 SVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~ 206 (576)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 465
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.62 E-value=0.14 Score=47.13 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....++.|.|.+|.||||+|+.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999863
No 466
>PRK06761 hypothetical protein; Provisional
Probab=93.61 E-value=0.1 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+++.|.|++|+||||+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 467
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.60 E-value=0.23 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++..|.|.+|.||||++..+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 6889999999999999988876
No 468
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.58 E-value=0.44 Score=45.24 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCC----CHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDD----DLNLLQEK 257 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~----~~~~l~~~ 257 (576)
..+++.|.|+.|.||||+.+.+.... +..+-....|.. . -....+.+|+..++..+.. ... +..++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~--~--~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPAS--S--ATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcC--c--eEEeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 34688999999999999998887531 111111112211 0 0011122223333322210 111 22222233
Q ss_pred HHHhhcCCeEEEEEeCCCCCC----hhh-hhhhccCCCCCCCCceEEEEecchHHHHhh
Q 045012 258 LKKQLSGKKFLLVLDDVWNEN----YNS-WCTLSCPFGAGASGSKIVVTHRNQDVAATM 311 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~~~~----~~~-~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 311 (576)
++. .+++-|++||.+.... ... -..+...+... .++.+|++|....++...
T Consensus 105 l~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 LSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 322 2578999999974321 111 11233333322 578899999998876544
No 469
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.57 E-value=0.55 Score=48.19 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC--CCChhHHHHHHHHhhhCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE--DFDVSRVTQSILKSIAND 243 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~ 243 (576)
..+.+|..+|.-|.||||.+-.+++..+- ..+ .+-+...+ .+...+-++.+.++++.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~--kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGK--KVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH-cCC--ceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 46789999999999999999888774332 222 22222222 233445666777776654
No 470
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.57 E-value=0.37 Score=58.19 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..++-|.++|++|+|||.||++++.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh
Confidence 45678899999999999999999985
No 471
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.56 E-value=0.062 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 368999999999999999998863
No 472
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.54 E-value=0.14 Score=56.25 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=50.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+..++.|...+... +.+.|+|++|+||||+|+.+.... ...+++..+|..- ...+...+++.+...+
T Consensus 34 igq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 34 IGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred CChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 67777777777666432 368899999999999999998742 2234577778665 3336667777776655
Q ss_pred hC
Q 045012 241 AN 242 (576)
Q Consensus 241 ~~ 242 (576)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 43
No 473
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.52 E-value=3.5 Score=43.67 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=37.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
...++.|.|.+|+|||+++.++..+...... ..++|++. ..+..++...++....
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~Sl--Em~~~~i~~R~~~~~~ 248 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSL--EMSAEQLAMRMLSSES 248 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeC--cCCHHHHHHHHHHHhc
Confidence 4468999999999999999988764322222 23555544 4467777777776543
No 474
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.50 E-value=0.077 Score=38.90 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+..|+|..|+|||||..++..
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999977653
No 475
>PRK08006 replicative DNA helicase; Provisional
Probab=93.48 E-value=0.79 Score=48.85 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.+-.++.|-|.+|+|||++|..++.+........ ++++ |-..+..++...++....
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~-V~~f--SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKP-VLIF--SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCe-EEEE--eccCCHHHHHHHHHHHhc
Confidence 3457889999999999999998876432222222 3333 555677888888887654
No 476
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.46 E-value=1.1 Score=40.05 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHhhhCCCC-----CCCCCHHHHHHHHHHhhcCCeEEEEEeCC----CCCChhhhhhhccCCCCCCCCceE
Q 045012 228 DVSRVTQSILKSIANDHS-----KNDDDLNLLQEKLKKQLSGKKFLLVLDDV----WNENYNSWCTLSCPFGAGASGSKI 298 (576)
Q Consensus 228 ~~~~~~~~il~~l~~~~~-----~~~~~~~~l~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~~gs~i 298 (576)
+.....+.++.+++.... .+-..-++..-.+.+.+...+-+|+-|.- +...-....+++-.+. ...|+.+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 445556777777765432 13344455566778888889999998864 2222223333433332 3468889
Q ss_pred EEEecchHHHHhhh
Q 045012 299 VVTHRNQDVAATMR 312 (576)
Q Consensus 299 lvTtR~~~v~~~~~ 312 (576)
++.|.++.++..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 99999999988775
No 477
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.39 E-value=0.28 Score=51.02 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=47.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l-- 254 (576)
.-..++|.|.+|+|||||.+.+.+... .+..+...++... .+.++...+...=.... ..+.......
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 346799999999999999998886322 1233344444432 34444444443311110 0011111111
Q ss_pred ---HHHHHHhh--cCCeEEEEEeCC
Q 045012 255 ---QEKLKKQL--SGKKFLLVLDDV 274 (576)
Q Consensus 255 ---~~~l~~~l--~~kr~LlVlDdv 274 (576)
.-.+.+++ +++++||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 11122333 588999999998
No 478
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.36 E-value=0.37 Score=50.27 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCCC------CCCCCHH----
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDHS------KNDDDLN---- 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~------~~~~~~~---- 252 (576)
.-..++|.|..|+|||||.+.+++... -+..+++-+++.. .+.++....+..-+.... .+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999997422 2456666666554 344444443332111100 0111111
Q ss_pred -----HHHHHHHHhhcCCeEEEEEeCCC
Q 045012 253 -----LLQEKLKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 253 -----~l~~~l~~~l~~kr~LlVlDdv~ 275 (576)
.+.+.++. .++++||++||+-
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccchh
Confidence 12233333 5899999999993
No 479
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.36 E-value=0.51 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+-..++|+|+.|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 447899999999999999999875
No 480
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.33 E-value=0.3 Score=51.16 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC------CCCCCHHH----
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS------KNDDDLNL---- 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------~~~~~~~~---- 253 (576)
.-..++|.|..|+|||||++.+...... -..+++..-.+...+.++...+...-+.... .+.+....
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999999864321 1123333333333455555555443211100 01111111
Q ss_pred -HHHHHHHhh--cCCeEEEEEeCCC
Q 045012 254 -LQEKLKKQL--SGKKFLLVLDDVW 275 (576)
Q Consensus 254 -l~~~l~~~l--~~kr~LlVlDdv~ 275 (576)
..-.+.+++ +++.+|+++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 111223333 4789999999983
No 481
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.32 E-value=0.12 Score=53.99 Aligned_cols=47 Identities=26% Similarity=0.195 Sum_probs=30.9
Q ss_pred cccchhHHHHHHHHhc----CCC------CCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLR----DDL------RPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~----~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|.+..++.+...+.. -.. ......+.+.++|++|+|||+||+.+..
T Consensus 74 iGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 74 IGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred eChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 7777777766444311 000 0011346789999999999999999986
No 482
>PRK08356 hypothetical protein; Provisional
Probab=93.31 E-value=0.072 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.2
Q ss_pred cEEEEeecCcCcHHHHHHHHh
Q 045012 186 SVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~ 206 (576)
.+|.|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999883
No 483
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=93.30 E-value=0.63 Score=55.02 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=41.6
Q ss_pred chhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC
Q 045012 164 EKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN 242 (576)
Q Consensus 164 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 242 (576)
....++|.+.|.. -.++.|+|..|.||||.+-.++.+. .....+.+.++-.+......+...+.+.++.
T Consensus 69 ~~~~~~Il~~l~~--------~~vvii~g~TGSGKTTqlPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 69 SAKREDIAEAIAE--------NQVVIIAGETGSGKTTQLPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred HHHHHHHHHHHHh--------CceEEEeCCCCCCcHHHHHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 4556778888843 2589999999999999886665431 1111223332222333445566667766654
No 484
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.29 E-value=0.39 Score=50.30 Aligned_cols=91 Identities=21% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNLL-- 254 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~l-- 254 (576)
.-.-++|.|.+|+|||||+..+..+.. ..+-..++++-+++.. .+.+++.++...=.... ..+.+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 446789999999999999999876422 1222356666666543 45566666654311111 0011112211
Q ss_pred ---HHHHHHhh---cCCeEEEEEeCCC
Q 045012 255 ---QEKLKKQL---SGKKFLLVLDDVW 275 (576)
Q Consensus 255 ---~~~l~~~l---~~kr~LlVlDdv~ 275 (576)
.-.+.+++ +++.+||++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 12344454 4689999999993
No 485
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.28 E-value=0.56 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++|+|+.|.|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 486
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.28 E-value=0.38 Score=51.49 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=66.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+|......++...+.... .....+.|.|.+|+||+++|+.+..... . ....++.+.-..-..+.+...+
T Consensus 136 lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~--~~~~~~~~~c~~~~~~~~~~~l-- 205 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--R--ANGPFIALNMAAIPKDLIESEL-- 205 (463)
T ss_pred eeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--C--CCCCeEEEeCCCCCHHHHHHHh--
Confidence 3677666777766664432 2234678999999999999999876321 1 1122333322111223333322
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCC-----------CCceEEEEecch
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGA-----------SGSKIVVTHRNQ 305 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~~ 305 (576)
++.... ....... ...........-.|+||++..........+...+..+. .+.+||+||...
T Consensus 206 fg~~~~-~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 FGHEKG-AFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred cCCCCC-CCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 111100 0000000 00000111223458999998876666666655443321 245788888654
No 487
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.22 E-value=0.2 Score=55.10 Aligned_cols=70 Identities=17% Similarity=0.038 Sum_probs=43.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc-cccceEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-HFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+|.++.++.+...+... +-+.++|++|+||||+++.+.+. +.. .|...+++.- ...+...+++.+...
T Consensus 21 iG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v~~~ 89 (608)
T TIGR00764 21 IGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEVPAG 89 (608)
T ss_pred cCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHHHHh
Confidence 67777777666666432 25569999999999999999873 322 2333333322 223455566666665
Q ss_pred hh
Q 045012 240 IA 241 (576)
Q Consensus 240 l~ 241 (576)
++
T Consensus 90 ~g 91 (608)
T TIGR00764 90 EG 91 (608)
T ss_pred hc
Confidence 54
No 488
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.21 E-value=0.075 Score=44.72 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
|+|.|++|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 489
>PRK13946 shikimate kinase; Provisional
Probab=93.20 E-value=0.07 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+.|.++|++|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 490
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.20 E-value=0.21 Score=48.85 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=38.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAND 243 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 243 (576)
-.++.|-|.+|+|||++|.+++.+...... ..++|++ -..+..++...++......
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~S--lEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFS--LEMSEEELAARLLARLSGV 74 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEE--SSS-HHHHHHHHHHHHHTS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEc--CCCCHHHHHHHHHHHhhcc
Confidence 468999999999999999999885433322 4455554 4456777888887776543
No 491
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.18 E-value=0.069 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.--.|+|+|++|+|||||.+.+.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998864
No 492
>PRK15115 response regulator GlrR; Provisional
Probab=93.18 E-value=0.44 Score=50.66 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=31.1
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|....+.++.+...... ..-..+.|.|.+|+|||++|+.+.+.
T Consensus 137 ig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 137 VTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 677766666666543321 22345779999999999999998863
No 493
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.16 E-value=0.12 Score=52.03 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=55.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.|+|+.|.|||||++.+.... ... ...+.+.-........ .... ++...........-...+.+...++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~--~~~-~~iv~ied~~El~~~~--~~~~-~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI--PKD-ERIITIEDTREIFLPH--PNYV-HLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC--Ccc-ccEEEEcCccccCCCC--CCEE-EEEecCCCCCcCccCHHHHHHHHhcC
Confidence 3689999999999999999888632 111 1122221111111110 0000 00000000111112234556667778
Q ss_pred CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH
Q 045012 265 KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV 307 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 307 (576)
.+=.|++|.+... +.+. +...+..+.. -++.|+.....
T Consensus 218 ~pd~ii~gE~r~~--e~~~-~l~a~~~g~~--~~i~T~Ha~~~ 255 (308)
T TIGR02788 218 RPDRIILGELRGD--EAFD-FIRAVNTGHP--GSITTLHAGSP 255 (308)
T ss_pred CCCeEEEeccCCH--HHHH-HHHHHhcCCC--eEEEEEeCCCH
Confidence 8888999999763 3443 3333332222 24667765543
No 494
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.15 E-value=0.07 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++.|+|++|.|||||++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 495
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.14 E-value=0.3 Score=52.87 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCC--------------CCCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDH--------------SKND 248 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------------~~~~ 248 (576)
....++.|.|.+|+|||+|+.+++.+ ....-..++|++.... +..+...+ .+++... ....
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~--~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEA--ACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 34578999999999999999998863 2334457788877553 44443333 3333211 0011
Q ss_pred CCHHHHHHHHHHhhcC-CeEEEEEeCC
Q 045012 249 DDLNLLQEKLKKQLSG-KKFLLVLDDV 274 (576)
Q Consensus 249 ~~~~~l~~~l~~~l~~-kr~LlVlDdv 274 (576)
...+.....+.+.+.. +.-++|+|.+
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 2334444555554433 4457888887
No 496
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.13 E-value=0.058 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 497
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.10 E-value=0.095 Score=49.01 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=46.3
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC--CCCCHHHHHHHHH
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK--NDDDLNLLQEKLK 259 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~l~~~l~ 259 (576)
...+.++.|.|.+|.||||++..+..... ....+.++...--....-...+... ...... .......+.+.+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998876321 2344444432110111111222221 111100 0112333455555
Q ss_pred HhhcCCeEEEEEeCCCCCChhhhhhhccCCC
Q 045012 260 KQLSGKKFLLVLDDVWNENYNSWCTLSCPFG 290 (576)
Q Consensus 260 ~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 290 (576)
+..-.+++=+|+|..-.. ......+...+.
T Consensus 87 ~~a~~~~~nii~E~tl~~-~~~~~~~~~~~k 116 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSN-PSKLRKLIREAK 116 (199)
T ss_dssp HHHHHCT--EEEE--TTS-SHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCC-hhHHHHHHHHHH
Confidence 555566778888987543 223333444444
No 498
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.09 E-value=0.062 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.5
Q ss_pred EeecCcCcHHHHHHHHhcccc
Q 045012 190 IHGLGGVGKTTLAQLVYNDDR 210 (576)
Q Consensus 190 I~G~gGiGKTtLa~~v~~~~~ 210 (576)
|+||+|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999987543
No 499
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.08 E-value=0.069 Score=61.24 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=72.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchh--ccccceEEEEeCCCC----Chh--HHHHHHHHhhhCCCCCCCCCHHHHHH
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQ--RHFEIKAWTCVSEDF----DVS--RVTQSILKSIANDHSKNDDDLNLLQE 256 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~----~~~--~~~~~il~~l~~~~~~~~~~~~~l~~ 256 (576)
..-+.|+|.+|.||||+.+.+.-....+ ..=+..+++.+.... ... .+..-+...+..... ......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~-----~~~~~~ 296 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI-----AKQLIE 296 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC-----cchhhH
Confidence 3478999999999999998876421111 111222333322100 011 222222222222221 112222
Q ss_pred HHHHhhcCCeEEEEEeCCCCCChhhhhhh---ccCCCCCCCCceEEEEecchHHHHhhhcccceecCCCChHHHH
Q 045012 257 KLKKQLSGKKFLLVLDDVWNENYNSWCTL---SCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKELSDDDCL 328 (576)
Q Consensus 257 ~l~~~l~~kr~LlVlDdv~~~~~~~~~~l---~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~ea~ 328 (576)
...+.+...++++++|.++......-... ...+.+.-+.+.+|+|+|....-........+.+..+.++.-.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 23567888999999999876432211111 2223333468899999987655444444445555555555433
No 500
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.06 E-value=0.066 Score=50.73 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhccc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 467899999999999999998763
Done!