Query 045012
Match_columns 576
No_of_seqs 465 out of 2893
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-51 6E-56 445.9 25.0 349 155-526 124-504 (549)
2 1vt4_I APAF-1 related killer D 100.0 1E-40 3.6E-45 366.7 21.2 284 161-491 131-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-39 2.5E-43 380.9 26.1 308 160-499 126-453 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3E-36 1E-40 330.7 24.2 303 159-495 125-449 (591)
5 1w5s_A Origin recognition comp 99.7 3.2E-17 1.1E-21 171.1 18.8 313 160-487 24-387 (412)
6 2qen_A Walker-type ATPase; unk 99.7 8.4E-17 2.9E-21 163.9 20.4 289 160-492 14-349 (350)
7 2fna_A Conserved hypothetical 99.7 8.7E-16 3E-20 156.8 21.4 288 160-491 15-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.6 2.3E-16 7.9E-21 131.9 8.0 76 12-87 3-82 (115)
9 2v1u_A Cell division control p 99.6 3.1E-13 1.1E-17 139.4 23.3 294 159-474 20-351 (387)
10 2qby_B CDC6 homolog 3, cell di 99.5 6.4E-13 2.2E-17 137.1 24.5 289 160-474 22-339 (384)
11 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.3E-17 135.0 26.2 295 160-474 19-351 (389)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.4E-12 4.8E-17 134.4 19.9 292 160-474 22-348 (386)
13 1njg_A DNA polymerase III subu 99.4 1.1E-11 3.9E-16 118.6 16.4 197 160-372 25-231 (250)
14 2chg_A Replication factor C sm 99.3 8.6E-11 2.9E-15 110.8 15.3 184 160-370 19-205 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.1 1.1E-10 3.7E-15 117.4 7.8 266 160-473 14-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 6E-10 2E-14 111.7 13.3 184 160-370 23-211 (323)
17 1iqp_A RFCS; clamp loader, ext 98.9 6.9E-09 2.4E-13 104.1 11.9 186 160-372 27-215 (327)
18 1jr3_A DNA polymerase III subu 98.8 3.8E-08 1.3E-12 100.6 15.2 195 160-370 18-222 (373)
19 3te6_A Regulatory protein SIR3 98.8 4.3E-08 1.5E-12 96.8 13.9 172 161-336 23-212 (318)
20 2chq_A Replication factor C sm 98.8 6E-08 2.1E-12 96.7 14.7 180 161-370 20-205 (319)
21 3pfi_A Holliday junction ATP-d 98.6 1.2E-06 4.2E-11 88.1 18.5 254 160-475 31-314 (338)
22 1sxj_D Activator 1 41 kDa subu 98.6 3.4E-07 1.2E-11 92.7 14.3 194 160-369 39-235 (353)
23 1jbk_A CLPB protein; beta barr 98.5 8.3E-08 2.8E-12 87.8 6.8 43 160-208 24-66 (195)
24 3bos_A Putative DNA replicatio 98.5 1.2E-07 4E-12 90.4 7.3 155 184-370 51-218 (242)
25 2z4s_A Chromosomal replication 98.5 1.1E-06 3.6E-11 91.8 14.7 163 185-369 130-306 (440)
26 1a5t_A Delta prime, HOLB; zinc 98.5 3E-06 1E-10 85.1 16.4 183 166-369 10-205 (334)
27 3uk6_A RUVB-like 2; hexameric 98.4 4.1E-06 1.4E-10 85.3 14.6 198 160-369 46-303 (368)
28 3pvs_A Replication-associated 98.4 4E-06 1.4E-10 87.3 14.4 178 161-370 29-216 (447)
29 1sxj_A Activator 1 95 kDa subu 98.3 3.5E-06 1.2E-10 89.9 13.7 195 161-370 42-254 (516)
30 1sxj_E Activator 1 40 kDa subu 98.3 1.8E-06 6.1E-11 87.5 10.6 105 264-371 133-239 (354)
31 3u61_B DNA polymerase accessor 98.3 2.8E-06 9.7E-11 84.9 11.6 178 161-369 29-216 (324)
32 3h4m_A Proteasome-activating n 98.3 4.6E-06 1.6E-10 81.7 12.9 182 161-368 20-230 (285)
33 3syl_A Protein CBBX; photosynt 98.3 5.1E-06 1.7E-10 82.4 13.2 160 161-337 34-219 (309)
34 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.5E-05 5.1E-10 76.8 15.9 162 184-369 38-222 (262)
35 1l8q_A Chromosomal replication 98.2 1.2E-05 4.1E-10 80.3 13.9 157 184-365 36-204 (324)
36 1d2n_A N-ethylmaleimide-sensit 98.2 1.6E-05 5.3E-10 77.3 14.3 168 161-360 36-228 (272)
37 1sxj_C Activator 1 40 kDa subu 98.2 1.2E-05 4.2E-10 80.8 12.9 174 161-367 28-210 (340)
38 3eie_A Vacuolar protein sortin 98.2 7.3E-05 2.5E-09 74.5 17.9 185 161-370 21-229 (322)
39 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00013 4.4E-09 72.6 18.8 163 184-370 44-224 (322)
40 2p65_A Hypothetical protein PF 98.1 3E-06 1E-10 76.9 6.2 43 160-208 24-66 (187)
41 2qp9_X Vacuolar protein sortin 98.1 6.7E-05 2.3E-09 75.8 16.6 186 160-370 53-262 (355)
42 2gno_A DNA polymerase III, gam 98.1 1.8E-05 6E-10 78.1 11.5 148 163-335 2-152 (305)
43 3n70_A Transport activator; si 98.1 4.4E-06 1.5E-10 72.9 6.0 113 161-305 4-116 (145)
44 3d8b_A Fidgetin-like protein 1 98.0 4.7E-05 1.6E-09 77.1 13.7 186 160-370 86-296 (357)
45 3ec2_A DNA replication protein 98.0 7.4E-06 2.5E-10 74.2 6.6 103 185-305 38-143 (180)
46 3b9p_A CG5977-PA, isoform A; A 98.0 0.00016 5.4E-09 71.1 15.7 184 161-369 24-233 (297)
47 2zan_A Vacuolar protein sortin 98.0 0.00017 5.9E-09 75.1 16.7 187 160-370 136-346 (444)
48 2w58_A DNAI, primosome compone 97.9 1.2E-05 4.1E-10 74.2 7.0 101 186-305 55-159 (202)
49 1qvr_A CLPB protein; coiled co 97.9 1.7E-05 5.7E-10 89.9 8.6 152 160-334 172-344 (854)
50 3pxg_A Negative regulator of g 97.9 3.2E-05 1.1E-09 81.2 10.0 145 160-335 182-338 (468)
51 1in4_A RUVB, holliday junction 97.9 0.0007 2.4E-08 67.7 19.3 175 161-369 28-223 (334)
52 3vfd_A Spastin; ATPase, microt 97.9 0.00014 4.7E-09 74.5 14.2 186 160-370 117-327 (389)
53 3cf0_A Transitional endoplasmi 97.9 0.00021 7.2E-09 70.3 14.7 155 184-364 48-223 (301)
54 4fcw_A Chaperone protein CLPB; 97.8 0.00019 6.4E-09 71.0 14.0 120 161-289 20-143 (311)
55 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00027 9.2E-09 79.1 15.3 155 160-335 188-362 (758)
56 3co5_A Putative two-component 97.7 2.2E-05 7.4E-10 68.2 4.6 108 161-304 7-115 (143)
57 3hu3_A Transitional endoplasmi 97.7 0.00018 6.2E-09 75.6 12.4 184 160-369 206-415 (489)
58 4b4t_J 26S protease regulatory 97.7 0.00036 1.2E-08 70.6 13.1 176 161-362 151-354 (405)
59 2c9o_A RUVB-like 1; hexameric 97.7 0.00018 6.3E-09 75.2 11.5 98 267-369 297-410 (456)
60 2kjq_A DNAA-related protein; s 97.6 4.9E-05 1.7E-09 66.4 5.2 24 185-208 36-59 (149)
61 2bjv_A PSP operon transcriptio 97.6 0.00018 6E-09 69.4 9.7 44 161-208 9-52 (265)
62 3pxi_A Negative regulator of g 97.5 0.00016 5.6E-09 80.7 9.4 146 160-335 182-338 (758)
63 4b4t_L 26S protease subunit RP 97.5 0.00068 2.3E-08 69.6 13.0 176 161-362 184-387 (437)
64 1ofh_A ATP-dependent HSL prote 97.5 0.00062 2.1E-08 67.0 11.8 48 161-208 18-73 (310)
65 4b4t_K 26S protease regulatory 97.5 0.0005 1.7E-08 70.5 11.0 175 161-361 175-378 (428)
66 1ojl_A Transcriptional regulat 97.5 0.00043 1.5E-08 68.2 10.2 44 161-208 5-48 (304)
67 1lv7_A FTSH; alpha/beta domain 97.4 0.00081 2.8E-08 64.4 11.7 158 185-368 45-224 (257)
68 3pxi_A Negative regulator of g 97.4 0.0005 1.7E-08 76.8 11.6 152 161-334 494-674 (758)
69 2ce7_A Cell division protein F 97.4 0.00097 3.3E-08 69.5 12.6 152 185-362 49-221 (476)
70 2r62_A Cell division protease 97.4 0.00015 5.2E-09 70.0 6.2 48 161-208 14-67 (268)
71 4b4t_H 26S protease regulatory 97.3 0.00079 2.7E-08 69.1 10.6 175 161-361 212-414 (467)
72 2cvh_A DNA repair and recombin 97.3 0.00077 2.6E-08 62.7 9.8 87 184-276 19-116 (220)
73 3m6a_A ATP-dependent protease 97.3 0.00099 3.4E-08 71.1 11.5 139 184-335 107-266 (543)
74 3t15_A Ribulose bisphosphate c 97.3 0.0022 7.7E-08 62.6 13.1 26 183-208 34-59 (293)
75 4b4t_M 26S protease regulatory 97.3 0.00044 1.5E-08 71.0 7.5 175 161-361 184-386 (434)
76 2r44_A Uncharacterized protein 97.2 0.0013 4.5E-08 65.5 10.3 39 161-207 30-68 (331)
77 2qgz_A Helicase loader, putati 97.2 0.0002 6.7E-09 70.7 4.1 41 165-208 135-175 (308)
78 4b4t_I 26S protease regulatory 97.2 0.0016 5.5E-08 66.2 10.4 175 161-361 185-387 (437)
79 1qvr_A CLPB protein; coiled co 97.1 0.0014 4.8E-08 74.1 11.0 134 161-304 561-710 (854)
80 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.0032 1.1E-07 66.1 12.6 40 161-208 25-64 (500)
81 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00034 1.2E-08 68.4 4.7 69 185-276 123-193 (331)
82 3cf2_A TER ATPase, transitiona 96.9 0.0061 2.1E-07 67.4 13.1 176 161-362 207-407 (806)
83 3hr8_A Protein RECA; alpha and 96.9 0.0024 8.1E-08 63.9 8.7 86 184-276 60-150 (356)
84 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0015 5.3E-08 72.9 7.9 48 161-208 461-511 (758)
85 3io5_A Recombination and repai 96.8 0.0037 1.2E-07 60.9 9.0 85 187-276 30-122 (333)
86 2b8t_A Thymidine kinase; deoxy 96.8 0.00082 2.8E-08 62.6 4.3 114 184-305 11-126 (223)
87 1jr3_D DNA polymerase III, del 96.8 0.02 7E-07 57.1 14.8 159 184-369 17-185 (343)
88 1v5w_A DMC1, meiotic recombina 96.6 0.0057 2E-07 61.2 9.3 92 183-275 120-229 (343)
89 2x8a_A Nuclear valosin-contain 96.6 0.0065 2.2E-07 58.7 9.4 21 188-208 47-67 (274)
90 2zr9_A Protein RECA, recombina 96.6 0.0053 1.8E-07 61.5 8.9 86 184-276 60-150 (349)
91 1xp8_A RECA protein, recombina 96.5 0.0064 2.2E-07 61.2 9.0 86 184-276 73-163 (366)
92 1n0w_A DNA repair protein RAD5 96.5 0.0048 1.6E-07 58.1 7.3 92 184-276 23-130 (243)
93 1u94_A RECA protein, recombina 96.5 0.0063 2.1E-07 61.0 8.4 86 184-276 62-152 (356)
94 2z43_A DNA repair and recombin 96.4 0.0075 2.5E-07 59.8 8.7 91 184-275 106-213 (324)
95 1iy2_A ATP-dependent metallopr 96.4 0.0043 1.5E-07 60.0 6.6 21 188-208 76-96 (278)
96 1g5t_A COB(I)alamin adenosyltr 96.4 0.0018 6E-08 58.7 3.4 117 186-305 29-163 (196)
97 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0052 1.8E-07 57.4 6.8 116 185-305 23-168 (235)
98 2px0_A Flagellar biosynthesis 96.3 0.013 4.4E-07 57.2 9.6 87 184-274 104-191 (296)
99 2dhr_A FTSH; AAA+ protein, hex 96.3 0.013 4.6E-07 61.3 10.2 147 186-362 65-236 (499)
100 1ypw_A Transitional endoplasmi 96.2 0.0093 3.2E-07 66.7 8.9 154 161-335 207-385 (806)
101 1rz3_A Hypothetical protein rb 96.1 0.0053 1.8E-07 56.2 5.3 43 162-207 2-44 (201)
102 2i1q_A DNA repair and recombin 96.1 0.0092 3.2E-07 59.1 7.1 91 184-275 97-214 (322)
103 3bh0_A DNAB-like replicative h 95.9 0.034 1.2E-06 54.7 10.4 53 183-239 66-118 (315)
104 1odf_A YGR205W, hypothetical 3 95.9 0.038 1.3E-06 53.6 10.5 82 183-264 29-117 (290)
105 4a74_A DNA repair and recombin 95.6 0.028 9.6E-07 52.2 8.1 45 184-228 24-72 (231)
106 1pzn_A RAD51, DNA repair and r 95.6 0.021 7E-07 57.2 7.4 93 183-276 129-242 (349)
107 3lda_A DNA repair protein RAD5 95.6 0.031 1.1E-06 56.9 8.6 58 183-241 176-237 (400)
108 1qhx_A CPT, protein (chloramph 95.5 0.0067 2.3E-07 54.1 3.1 22 186-207 4-25 (178)
109 3lw7_A Adenylate kinase relate 95.5 0.0067 2.3E-07 53.7 3.0 20 186-205 2-21 (179)
110 1gvn_B Zeta; postsegregational 95.4 0.013 4.6E-07 56.8 5.3 25 183-207 31-55 (287)
111 4a1f_A DNAB helicase, replicat 95.4 0.14 4.6E-06 50.7 12.5 54 184-241 45-98 (338)
112 1zp6_A Hypothetical protein AT 95.4 0.0088 3E-07 54.0 3.6 24 184-207 8-31 (191)
113 3kb2_A SPBC2 prophage-derived 95.4 0.0077 2.6E-07 53.3 3.0 22 186-207 2-23 (173)
114 3kl4_A SRP54, signal recogniti 95.4 0.092 3.2E-06 53.8 11.4 26 183-208 95-120 (433)
115 1ly1_A Polynucleotide kinase; 95.4 0.0079 2.7E-07 53.6 3.1 22 186-207 3-24 (181)
116 3dm5_A SRP54, signal recogniti 95.3 0.076 2.6E-06 54.4 10.7 25 184-208 99-123 (443)
117 3c8u_A Fructokinase; YP_612366 95.3 0.014 4.9E-07 53.6 4.8 25 183-207 20-44 (208)
118 2xxa_A Signal recognition part 95.3 0.17 5.9E-06 51.9 13.3 43 166-208 78-123 (433)
119 1vma_A Cell division protein F 95.3 0.033 1.1E-06 54.4 7.6 90 183-275 102-196 (306)
120 3e70_C DPA, signal recognition 95.2 0.12 4E-06 51.1 11.4 26 183-208 127-152 (328)
121 3vaa_A Shikimate kinase, SK; s 95.2 0.0099 3.4E-07 54.2 3.3 23 185-207 25-47 (199)
122 3ice_A Transcription terminati 95.2 0.032 1.1E-06 55.8 7.0 26 183-208 172-197 (422)
123 1kgd_A CASK, peripheral plasma 95.2 0.011 3.8E-07 53.0 3.5 23 185-207 5-27 (180)
124 3tqc_A Pantothenate kinase; bi 95.2 0.059 2E-06 52.9 9.0 45 161-207 70-114 (321)
125 2p5t_B PEZT; postsegregational 95.2 0.017 5.8E-07 54.9 4.8 26 182-207 29-54 (253)
126 2orw_A Thymidine kinase; TMTK, 95.1 0.0043 1.5E-07 56.0 0.5 106 186-304 4-112 (184)
127 1kag_A SKI, shikimate kinase I 95.1 0.0094 3.2E-07 52.8 2.6 22 186-207 5-26 (173)
128 2rhm_A Putative kinase; P-loop 95.1 0.012 4.2E-07 53.1 3.4 24 184-207 4-27 (193)
129 3uie_A Adenylyl-sulfate kinase 95.1 0.013 4.4E-07 53.5 3.6 25 184-208 24-48 (200)
130 3tau_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 54.0 3.5 25 184-208 7-31 (208)
131 3cmu_A Protein RECA, recombina 95.0 0.041 1.4E-06 66.3 8.6 86 183-275 1425-1515(2050)
132 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4E-07 53.8 3.2 24 185-208 18-41 (202)
133 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.2E-07 52.7 3.1 23 185-207 5-27 (185)
134 4eun_A Thermoresistant glucoki 94.9 0.014 4.7E-07 53.3 3.4 24 184-207 28-51 (200)
135 1sky_E F1-ATPase, F1-ATP synth 94.9 0.048 1.6E-06 56.2 7.6 51 186-237 152-203 (473)
136 1knq_A Gluconate kinase; ALFA/ 94.9 0.017 5.7E-07 51.4 3.8 24 184-207 7-30 (175)
137 3tr0_A Guanylate kinase, GMP k 94.9 0.015 5.1E-07 53.1 3.5 23 185-207 7-29 (205)
138 1nks_A Adenylate kinase; therm 94.8 0.013 4.6E-07 52.7 3.0 23 186-208 2-24 (194)
139 2qor_A Guanylate kinase; phosp 94.8 0.013 4.4E-07 53.7 2.9 25 184-208 11-35 (204)
140 3a00_A Guanylate kinase, GMP k 94.8 0.013 4.5E-07 52.8 2.9 22 186-207 2-23 (186)
141 3jvv_A Twitching mobility prot 94.8 0.016 5.4E-07 58.1 3.7 110 186-309 124-235 (356)
142 3iij_A Coilin-interacting nucl 94.8 0.014 4.6E-07 52.3 2.9 24 184-207 10-33 (180)
143 1kht_A Adenylate kinase; phosp 94.8 0.015 5.1E-07 52.4 3.1 22 186-207 4-25 (192)
144 4gp7_A Metallophosphoesterase; 94.7 0.014 4.6E-07 51.9 2.7 24 184-207 8-31 (171)
145 3hws_A ATP-dependent CLP prote 94.7 0.025 8.5E-07 57.0 4.9 48 161-208 18-74 (363)
146 2j41_A Guanylate kinase; GMP, 94.7 0.017 5.9E-07 52.7 3.4 23 185-207 6-28 (207)
147 3asz_A Uridine kinase; cytidin 94.7 0.018 6E-07 53.0 3.4 24 184-207 5-28 (211)
148 2c95_A Adenylate kinase 1; tra 94.6 0.019 6.4E-07 52.0 3.5 23 185-207 9-31 (196)
149 1ukz_A Uridylate kinase; trans 94.6 0.019 6.7E-07 52.3 3.6 25 183-207 13-37 (203)
150 1y63_A LMAJ004144AAA protein; 94.6 0.021 7E-07 51.4 3.7 24 184-207 9-32 (184)
151 1uf9_A TT1252 protein; P-loop, 94.6 0.02 6.7E-07 52.2 3.5 25 183-207 6-30 (203)
152 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.3E-07 52.9 2.8 23 185-207 4-26 (198)
153 1ex7_A Guanylate kinase; subst 94.6 0.015 5.3E-07 52.3 2.6 22 186-207 2-23 (186)
154 1tev_A UMP-CMP kinase; ploop, 94.6 0.018 6E-07 52.0 3.1 23 185-207 3-25 (196)
155 2qt1_A Nicotinamide riboside k 94.5 0.021 7.3E-07 52.3 3.6 25 183-207 19-43 (207)
156 2cdn_A Adenylate kinase; phosp 94.5 0.022 7.6E-07 51.9 3.7 25 183-207 18-42 (201)
157 1ye8_A Protein THEP1, hypothet 94.5 0.019 6.6E-07 51.3 3.1 22 187-208 2-23 (178)
158 3ney_A 55 kDa erythrocyte memb 94.5 0.022 7.6E-07 51.7 3.5 24 184-207 18-41 (197)
159 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.4E-07 51.8 3.1 22 186-207 3-24 (189)
160 1via_A Shikimate kinase; struc 94.5 0.017 5.7E-07 51.4 2.6 22 186-207 5-26 (175)
161 1xjc_A MOBB protein homolog; s 94.4 0.021 7.2E-07 50.4 3.1 25 184-208 3-27 (169)
162 1zuh_A Shikimate kinase; alpha 94.4 0.02 6.7E-07 50.5 2.9 25 183-207 5-29 (168)
163 2iyv_A Shikimate kinase, SK; t 94.4 0.017 5.8E-07 51.8 2.5 22 186-207 3-24 (184)
164 3umf_A Adenylate kinase; rossm 94.4 0.02 6.9E-07 52.9 3.0 27 182-208 26-52 (217)
165 2ze6_A Isopentenyl transferase 94.4 0.019 6.5E-07 54.6 2.9 23 186-208 2-24 (253)
166 1tue_A Replication protein E1; 94.4 0.037 1.3E-06 50.2 4.7 38 166-208 44-81 (212)
167 2bwj_A Adenylate kinase 5; pho 94.4 0.022 7.4E-07 51.7 3.2 23 185-207 12-34 (199)
168 2bbw_A Adenylate kinase 4, AK4 94.4 0.022 7.6E-07 53.8 3.4 23 185-207 27-49 (246)
169 1qf9_A UMP/CMP kinase, protein 94.3 0.026 9E-07 50.7 3.8 24 184-207 5-28 (194)
170 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.021 7.2E-07 54.5 3.2 23 185-207 4-26 (260)
171 2yvu_A Probable adenylyl-sulfa 94.3 0.026 8.8E-07 50.7 3.6 26 183-208 11-36 (186)
172 2jaq_A Deoxyguanosine kinase; 94.3 0.021 7.1E-07 52.0 3.0 21 187-207 2-22 (205)
173 2plr_A DTMP kinase, probable t 94.3 0.023 7.7E-07 52.1 3.2 23 186-208 5-27 (213)
174 2if2_A Dephospho-COA kinase; a 94.3 0.022 7.6E-07 52.0 3.1 22 186-207 2-23 (204)
175 3cmu_A Protein RECA, recombina 94.2 0.085 2.9E-06 63.7 8.6 88 183-277 381-473 (2050)
176 2vli_A Antibiotic resistance p 94.2 0.017 5.8E-07 51.7 2.2 23 185-207 5-27 (183)
177 1cke_A CK, MSSA, protein (cyti 94.2 0.023 7.8E-07 52.8 3.1 22 186-207 6-27 (227)
178 1aky_A Adenylate kinase; ATP:A 94.2 0.024 8.4E-07 52.4 3.3 23 185-207 4-26 (220)
179 1e6c_A Shikimate kinase; phosp 94.2 0.02 7E-07 50.6 2.6 22 186-207 3-24 (173)
180 1nn5_A Similar to deoxythymidy 94.2 0.027 9.2E-07 51.7 3.5 25 184-208 8-32 (215)
181 1rj9_A FTSY, signal recognitio 94.1 0.029 1E-06 54.8 3.8 24 184-207 101-124 (304)
182 2wwf_A Thymidilate kinase, put 94.1 0.027 9.3E-07 51.6 3.4 25 184-208 9-33 (212)
183 1znw_A Guanylate kinase, GMP k 94.1 0.027 9.3E-07 51.6 3.4 24 184-207 19-42 (207)
184 1z6g_A Guanylate kinase; struc 94.1 0.024 8.3E-07 52.5 3.0 23 185-207 23-45 (218)
185 1jjv_A Dephospho-COA kinase; P 94.1 0.025 8.7E-07 51.7 3.1 22 186-207 3-24 (206)
186 3cm0_A Adenylate kinase; ATP-b 94.1 0.025 8.5E-07 50.7 2.9 22 186-207 5-26 (186)
187 1ny5_A Transcriptional regulat 94.1 0.45 1.5E-05 48.1 12.6 44 160-207 139-182 (387)
188 3llm_A ATP-dependent RNA helic 94.0 0.1 3.5E-06 48.7 7.3 103 166-277 65-188 (235)
189 2hf9_A Probable hydrogenase ni 94.0 0.029 1E-06 52.0 3.4 25 184-208 37-61 (226)
190 1uj2_A Uridine-cytidine kinase 94.0 0.027 9.3E-07 53.5 3.2 25 183-207 20-44 (252)
191 3cmw_A Protein RECA, recombina 94.0 0.079 2.7E-06 63.1 7.7 87 184-277 382-473 (1706)
192 2z0h_A DTMP kinase, thymidylat 94.0 0.065 2.2E-06 48.3 5.7 22 187-208 2-23 (197)
193 1s96_A Guanylate kinase, GMP k 94.0 0.03 1E-06 51.9 3.4 24 184-207 15-38 (219)
194 3aez_A Pantothenate kinase; tr 94.0 0.03 1E-06 55.0 3.5 25 183-207 88-112 (312)
195 2j37_W Signal recognition part 94.0 0.29 1E-05 51.1 11.2 26 183-208 99-124 (504)
196 3l0o_A Transcription terminati 94.0 0.029 9.9E-07 56.0 3.3 35 169-208 164-198 (427)
197 2ffh_A Protein (FFH); SRP54, s 93.9 0.13 4.5E-06 52.5 8.3 25 184-208 97-121 (425)
198 1ls1_A Signal recognition part 93.9 0.14 4.6E-06 49.8 8.1 25 184-208 97-121 (295)
199 2q6t_A DNAB replication FORK h 93.9 0.22 7.4E-06 51.5 10.2 54 184-240 199-252 (444)
200 2jeo_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 52.6 3.5 24 184-207 24-47 (245)
201 2pez_A Bifunctional 3'-phospho 93.9 0.031 1.1E-06 49.8 3.2 24 184-207 4-27 (179)
202 1zd8_A GTP:AMP phosphotransfer 93.9 0.03 1E-06 52.1 3.2 24 184-207 6-29 (227)
203 3e1s_A Exodeoxyribonuclease V, 93.9 0.18 6.1E-06 53.9 9.5 103 186-302 205-313 (574)
204 2pbr_A DTMP kinase, thymidylat 93.8 0.029 9.9E-07 50.5 2.9 21 187-207 2-22 (195)
205 2ck3_D ATP synthase subunit be 93.8 0.32 1.1E-05 50.0 10.8 65 169-239 142-207 (482)
206 2pt5_A Shikimate kinase, SK; a 93.8 0.03 1E-06 49.2 2.9 21 187-207 2-22 (168)
207 1htw_A HI0065; nucleotide-bind 93.8 0.036 1.2E-06 48.4 3.4 24 184-207 32-55 (158)
208 1zak_A Adenylate kinase; ATP:A 93.8 0.032 1.1E-06 51.7 3.2 24 184-207 4-27 (222)
209 1gtv_A TMK, thymidylate kinase 93.8 0.021 7.2E-07 52.5 1.9 22 187-208 2-23 (214)
210 1ixz_A ATP-dependent metallopr 93.8 0.027 9.2E-07 53.4 2.7 21 188-208 52-72 (254)
211 2v54_A DTMP kinase, thymidylat 93.7 0.034 1.2E-06 50.6 3.3 24 185-208 4-27 (204)
212 1q57_A DNA primase/helicase; d 93.7 0.23 7.7E-06 52.3 10.0 55 183-240 240-294 (503)
213 3tlx_A Adenylate kinase 2; str 93.7 0.05 1.7E-06 51.3 4.5 24 184-207 28-51 (243)
214 4akg_A Glutathione S-transfera 93.7 0.61 2.1E-05 58.4 14.8 81 186-277 1268-1348(2695)
215 2ged_A SR-beta, signal recogni 93.7 0.052 1.8E-06 48.7 4.3 25 184-208 47-71 (193)
216 2wsm_A Hydrogenase expression/ 93.6 0.033 1.1E-06 51.4 3.0 25 184-208 29-53 (221)
217 2f6r_A COA synthase, bifunctio 93.6 0.041 1.4E-06 53.2 3.7 24 183-206 73-96 (281)
218 3fwy_A Light-independent proto 93.6 0.082 2.8E-06 51.9 5.9 40 183-224 46-85 (314)
219 1j8m_F SRP54, signal recogniti 93.6 0.17 5.9E-06 49.1 8.2 90 185-276 98-191 (297)
220 4e22_A Cytidylate kinase; P-lo 93.6 0.04 1.4E-06 52.3 3.5 23 185-207 27-49 (252)
221 2ga8_A Hypothetical 39.9 kDa p 93.6 0.067 2.3E-06 53.0 5.2 41 165-207 6-46 (359)
222 2r6a_A DNAB helicase, replicat 93.6 0.26 8.9E-06 51.1 10.0 52 184-238 202-253 (454)
223 1sq5_A Pantothenate kinase; P- 93.5 0.077 2.6E-06 52.0 5.6 25 183-207 78-102 (308)
224 1m7g_A Adenylylsulfate kinase; 93.5 0.041 1.4E-06 50.6 3.3 25 184-208 24-48 (211)
225 3fb4_A Adenylate kinase; psych 93.5 0.036 1.2E-06 51.0 2.9 21 187-207 2-22 (216)
226 2yhs_A FTSY, cell division pro 93.4 0.2 6.8E-06 51.9 8.6 43 183-228 291-333 (503)
227 2grj_A Dephospho-COA kinase; T 93.4 0.04 1.4E-06 49.9 2.9 25 183-207 10-34 (192)
228 3bgw_A DNAB-like replicative h 93.4 0.34 1.2E-05 49.9 10.4 53 184-240 196-248 (444)
229 3cf2_A TER ATPase, transitiona 93.4 0.097 3.3E-06 57.9 6.5 95 161-276 480-581 (806)
230 2ehv_A Hypothetical protein PH 93.3 0.039 1.3E-06 52.0 3.0 24 184-207 29-52 (251)
231 3dl0_A Adenylate kinase; phosp 93.3 0.04 1.4E-06 50.8 2.9 21 187-207 2-22 (216)
232 2qtf_A Protein HFLX, GTP-bindi 93.3 0.1 3.4E-06 52.4 6.1 26 183-208 177-202 (364)
233 2qe7_A ATP synthase subunit al 93.3 0.12 4.2E-06 53.4 6.7 85 184-274 161-263 (502)
234 2f1r_A Molybdopterin-guanine d 93.3 0.033 1.1E-06 49.4 2.2 23 186-208 3-25 (171)
235 2i3b_A HCR-ntpase, human cance 93.2 0.04 1.4E-06 49.7 2.7 23 186-208 2-24 (189)
236 1g8p_A Magnesium-chelatase 38 93.2 0.043 1.5E-06 54.6 3.2 42 161-208 27-68 (350)
237 3lnc_A Guanylate kinase, GMP k 93.2 0.032 1.1E-06 52.1 2.1 23 185-207 27-50 (231)
238 1vht_A Dephospho-COA kinase; s 93.2 0.049 1.7E-06 50.3 3.4 23 185-207 4-26 (218)
239 1um8_A ATP-dependent CLP prote 93.2 0.075 2.6E-06 53.6 5.0 25 184-208 71-95 (376)
240 2onk_A Molybdate/tungstate ABC 93.2 0.05 1.7E-06 51.2 3.4 24 183-207 23-46 (240)
241 1np6_A Molybdopterin-guanine d 93.1 0.049 1.7E-06 48.4 3.1 25 184-208 5-29 (174)
242 3upu_A ATP-dependent DNA helic 93.1 0.13 4.5E-06 53.4 6.9 23 186-208 46-68 (459)
243 1fx0_B ATP synthase beta chain 93.1 0.28 9.4E-06 50.7 9.0 55 184-239 164-219 (498)
244 3be4_A Adenylate kinase; malar 93.1 0.043 1.5E-06 50.7 2.8 22 186-207 6-27 (217)
245 3b9q_A Chloroplast SRP recepto 93.1 0.05 1.7E-06 53.1 3.4 26 183-208 98-123 (302)
246 2dr3_A UPF0273 protein PH0284; 93.1 0.077 2.6E-06 49.7 4.7 39 184-224 22-60 (247)
247 3tif_A Uncharacterized ABC tra 93.1 0.053 1.8E-06 50.8 3.4 23 185-207 31-53 (235)
248 2pcj_A ABC transporter, lipopr 93.0 0.051 1.7E-06 50.5 3.1 23 185-207 30-52 (224)
249 3p32_A Probable GTPase RV1496/ 92.9 0.095 3.2E-06 52.5 5.3 38 167-208 65-102 (355)
250 1a7j_A Phosphoribulokinase; tr 92.8 0.034 1.2E-06 54.0 1.8 24 184-207 4-27 (290)
251 3nwj_A ATSK2; P loop, shikimat 92.8 0.052 1.8E-06 51.4 2.9 22 186-207 49-70 (250)
252 2cbz_A Multidrug resistance-as 92.7 0.062 2.1E-06 50.4 3.4 23 185-207 31-53 (237)
253 3hjn_A DTMP kinase, thymidylat 92.7 0.13 4.4E-06 46.7 5.4 22 187-208 2-23 (197)
254 3r20_A Cytidylate kinase; stru 92.7 0.059 2E-06 50.3 3.1 23 185-207 9-31 (233)
255 1ak2_A Adenylate kinase isoenz 92.7 0.064 2.2E-06 50.1 3.4 25 184-208 15-39 (233)
256 4eaq_A DTMP kinase, thymidylat 92.7 0.098 3.3E-06 48.8 4.6 25 184-208 25-49 (229)
257 3b85_A Phosphate starvation-in 92.6 0.05 1.7E-06 50.0 2.5 22 186-207 23-44 (208)
258 3ake_A Cytidylate kinase; CMP 92.6 0.057 1.9E-06 49.2 2.9 21 187-207 4-24 (208)
259 1b0u_A Histidine permease; ABC 92.6 0.065 2.2E-06 51.2 3.4 24 184-207 31-54 (262)
260 3zvl_A Bifunctional polynucleo 92.6 0.068 2.3E-06 54.8 3.8 26 183-208 256-281 (416)
261 2zej_A Dardarin, leucine-rich 92.6 0.055 1.9E-06 48.3 2.7 22 187-208 4-25 (184)
262 1e4v_A Adenylate kinase; trans 92.6 0.06 2.1E-06 49.5 3.0 21 187-207 2-22 (214)
263 3sr0_A Adenylate kinase; phosp 92.6 0.055 1.9E-06 49.6 2.7 22 187-208 2-23 (206)
264 3a8t_A Adenylate isopentenyltr 92.5 0.069 2.4E-06 52.6 3.5 24 184-207 39-62 (339)
265 1oix_A RAS-related protein RAB 92.5 0.063 2.1E-06 48.3 3.0 24 185-208 29-52 (191)
266 2xb4_A Adenylate kinase; ATP-b 92.5 0.06 2.1E-06 50.0 2.9 21 187-207 2-22 (223)
267 2og2_A Putative signal recogni 92.4 0.068 2.3E-06 53.4 3.4 26 183-208 155-180 (359)
268 3exa_A TRNA delta(2)-isopenten 92.4 0.067 2.3E-06 52.0 3.2 23 185-207 3-25 (322)
269 2wji_A Ferrous iron transport 92.4 0.069 2.4E-06 46.7 3.1 23 186-208 4-26 (165)
270 3gfo_A Cobalt import ATP-bindi 92.4 0.062 2.1E-06 51.6 2.9 23 185-207 34-56 (275)
271 2olj_A Amino acid ABC transpor 92.4 0.072 2.5E-06 50.8 3.4 24 184-207 49-72 (263)
272 3d3q_A TRNA delta(2)-isopenten 92.4 0.061 2.1E-06 53.1 2.9 22 186-207 8-29 (340)
273 1ltq_A Polynucleotide kinase; 92.4 0.063 2.2E-06 52.3 3.1 22 186-207 3-24 (301)
274 3foz_A TRNA delta(2)-isopenten 92.4 0.076 2.6E-06 51.5 3.5 25 183-207 8-32 (316)
275 3cmw_A Protein RECA, recombina 92.4 0.21 7.2E-06 59.5 7.8 85 183-274 1429-1518(1706)
276 1sgw_A Putative ABC transporte 92.3 0.061 2.1E-06 49.6 2.7 22 186-207 36-57 (214)
277 2v3c_C SRP54, signal recogniti 92.3 0.11 3.6E-06 53.5 4.7 25 184-208 98-122 (432)
278 1yrb_A ATP(GTP)binding protein 92.3 0.085 2.9E-06 50.1 3.7 26 183-208 12-37 (262)
279 1ji0_A ABC transporter; ATP bi 92.3 0.068 2.3E-06 50.3 3.0 23 185-207 32-54 (240)
280 1mv5_A LMRA, multidrug resista 92.2 0.077 2.6E-06 50.0 3.3 24 184-207 27-50 (243)
281 2v9p_A Replication protein E1; 92.2 0.081 2.8E-06 51.5 3.5 25 183-207 124-148 (305)
282 1zu4_A FTSY; GTPase, signal re 92.2 0.11 3.9E-06 51.0 4.7 26 183-208 103-128 (320)
283 1vpl_A ABC transporter, ATP-bi 92.2 0.08 2.7E-06 50.3 3.4 23 185-207 41-63 (256)
284 1g6h_A High-affinity branched- 92.2 0.069 2.3E-06 50.8 3.0 23 185-207 33-55 (257)
285 4g1u_C Hemin import ATP-bindin 92.2 0.069 2.3E-06 51.1 3.0 23 185-207 37-59 (266)
286 2dyk_A GTP-binding protein; GT 92.2 0.078 2.7E-06 45.7 3.1 23 186-208 2-24 (161)
287 3crm_A TRNA delta(2)-isopenten 92.2 0.068 2.3E-06 52.4 2.9 22 186-207 6-27 (323)
288 2pze_A Cystic fibrosis transme 92.2 0.072 2.5E-06 49.7 3.0 23 185-207 34-56 (229)
289 1nlf_A Regulatory protein REPA 92.2 0.074 2.5E-06 51.2 3.2 24 184-207 29-52 (279)
290 2ghi_A Transport protein; mult 92.2 0.081 2.8E-06 50.4 3.4 23 185-207 46-68 (260)
291 2zu0_C Probable ATP-dependent 92.2 0.083 2.8E-06 50.5 3.5 23 185-207 46-68 (267)
292 2d2e_A SUFC protein; ABC-ATPas 92.1 0.075 2.6E-06 50.3 3.1 23 185-207 29-51 (250)
293 1cr0_A DNA primase/helicase; R 92.1 0.086 2.9E-06 51.2 3.6 25 184-208 34-58 (296)
294 2ixe_A Antigen peptide transpo 92.1 0.083 2.8E-06 50.7 3.4 23 185-207 45-67 (271)
295 2f9l_A RAB11B, member RAS onco 92.1 0.068 2.3E-06 48.4 2.7 23 186-208 6-28 (199)
296 2ff7_A Alpha-hemolysin translo 92.0 0.075 2.6E-06 50.2 3.0 23 185-207 35-57 (247)
297 2r9v_A ATP synthase subunit al 92.0 0.19 6.4E-06 52.0 6.1 85 184-274 174-276 (515)
298 2vp4_A Deoxynucleoside kinase; 92.0 0.076 2.6E-06 49.5 3.0 25 183-207 18-42 (230)
299 1svi_A GTP-binding protein YSX 92.0 0.11 3.6E-06 46.6 3.9 26 183-208 21-46 (195)
300 3end_A Light-independent proto 92.0 0.18 6.2E-06 49.1 5.9 44 182-227 38-81 (307)
301 2lkc_A Translation initiation 91.9 0.12 4E-06 45.5 4.0 26 183-208 6-31 (178)
302 1g41_A Heat shock protein HSLU 91.9 0.14 4.8E-06 52.5 5.1 24 184-207 49-72 (444)
303 2yz2_A Putative ABC transporte 91.9 0.089 3.1E-06 50.3 3.4 23 185-207 33-55 (266)
304 2eyu_A Twitching motility prot 91.9 0.091 3.1E-06 50.1 3.4 109 185-308 25-136 (261)
305 3k1j_A LON protease, ATP-depen 91.9 0.11 3.9E-06 56.0 4.6 39 161-207 44-82 (604)
306 4edh_A DTMP kinase, thymidylat 91.9 0.24 8.1E-06 45.5 6.1 24 185-208 6-29 (213)
307 1svm_A Large T antigen; AAA+ f 91.9 0.09 3.1E-06 52.9 3.5 25 183-207 167-191 (377)
308 2qmh_A HPR kinase/phosphorylas 91.8 0.084 2.9E-06 47.7 2.8 22 186-207 35-56 (205)
309 2qi9_C Vitamin B12 import ATP- 91.8 0.084 2.9E-06 49.9 3.0 23 185-207 26-48 (249)
310 2ce2_X GTPase HRAS; signaling 91.8 0.085 2.9E-06 45.5 2.9 22 187-208 5-26 (166)
311 2nq2_C Hypothetical ABC transp 91.7 0.087 3E-06 50.0 3.0 23 185-207 31-53 (253)
312 2wjg_A FEOB, ferrous iron tran 91.7 0.11 3.7E-06 46.3 3.6 24 185-208 7-30 (188)
313 3pqc_A Probable GTP-binding pr 91.7 0.12 4.2E-06 46.1 4.0 26 183-208 21-46 (195)
314 3ld9_A DTMP kinase, thymidylat 91.7 0.23 7.9E-06 45.9 5.8 27 183-209 19-45 (223)
315 2ck3_A ATP synthase subunit al 91.6 0.32 1.1E-05 50.4 7.3 89 184-274 161-271 (510)
316 1u0j_A DNA replication protein 91.6 0.17 6E-06 47.9 5.0 37 167-207 90-126 (267)
317 2ihy_A ABC transporter, ATP-bi 91.6 0.086 3E-06 50.8 2.9 23 185-207 47-69 (279)
318 3sop_A Neuronal-specific septi 91.6 0.095 3.2E-06 50.2 3.2 21 187-207 4-24 (270)
319 1q3t_A Cytidylate kinase; nucl 91.5 0.11 3.7E-06 48.7 3.5 25 183-207 14-38 (236)
320 2aka_B Dynamin-1; fusion prote 91.5 0.22 7.6E-06 48.1 5.9 26 183-208 24-49 (299)
321 2ocp_A DGK, deoxyguanosine kin 91.5 0.1 3.5E-06 48.9 3.3 24 185-208 2-25 (241)
322 1nrj_B SR-beta, signal recogni 91.5 0.11 3.8E-06 47.6 3.5 26 183-208 10-35 (218)
323 3kta_A Chromosome segregation 91.5 0.12 4E-06 46.1 3.5 22 186-207 27-48 (182)
324 3q72_A GTP-binding protein RAD 91.4 0.092 3.2E-06 45.6 2.7 22 187-208 4-25 (166)
325 2r8r_A Sensor protein; KDPD, P 91.4 0.21 7.3E-06 46.0 5.2 23 186-208 7-29 (228)
326 2nzj_A GTP-binding protein REM 91.3 0.11 3.8E-06 45.4 3.1 23 186-208 5-27 (175)
327 3dzd_A Transcriptional regulat 91.3 1.4 4.7E-05 44.1 11.6 45 160-208 131-175 (368)
328 3q85_A GTP-binding protein REM 91.2 0.11 3.6E-06 45.3 2.9 21 187-207 4-24 (169)
329 2erx_A GTP-binding protein DI- 91.2 0.11 3.6E-06 45.3 2.9 22 187-208 5-26 (172)
330 1fzq_A ADP-ribosylation factor 91.2 0.13 4.4E-06 45.7 3.4 26 183-208 14-39 (181)
331 1z2a_A RAS-related protein RAB 91.2 0.11 3.7E-06 45.1 2.9 24 185-208 5-28 (168)
332 1u8z_A RAS-related protein RAL 91.1 0.1 3.6E-06 45.1 2.8 23 186-208 5-27 (168)
333 1nij_A Hypothetical protein YJ 91.1 0.099 3.4E-06 51.4 2.8 25 184-208 3-27 (318)
334 3thx_A DNA mismatch repair pro 91.0 0.49 1.7E-05 53.3 8.7 22 184-205 661-682 (934)
335 3con_A GTPase NRAS; structural 91.0 0.1 3.6E-06 46.5 2.7 23 186-208 22-44 (190)
336 1z08_A RAS-related protein RAB 91.0 0.11 3.7E-06 45.3 2.8 24 185-208 6-29 (170)
337 2gj8_A MNME, tRNA modification 91.0 0.13 4.4E-06 45.3 3.3 23 186-208 5-27 (172)
338 1m7b_A RND3/RHOE small GTP-bin 91.0 0.11 3.8E-06 46.2 2.9 24 185-208 7-30 (184)
339 3lv8_A DTMP kinase, thymidylat 91.0 0.31 1.1E-05 45.5 6.0 25 185-209 27-51 (236)
340 1kao_A RAP2A; GTP-binding prot 91.0 0.11 3.7E-06 44.9 2.7 22 187-208 5-26 (167)
341 2bbs_A Cystic fibrosis transme 91.0 0.13 4.5E-06 49.8 3.5 24 184-207 63-86 (290)
342 3eph_A TRNA isopentenyltransfe 91.0 0.12 4.2E-06 52.1 3.3 22 186-207 3-24 (409)
343 3gqb_B V-type ATP synthase bet 91.0 0.2 6.8E-06 51.2 4.9 89 185-274 147-260 (464)
344 1ek0_A Protein (GTP-binding pr 91.0 0.11 3.8E-06 45.1 2.8 22 187-208 5-26 (170)
345 1cp2_A CP2, nitrogenase iron p 90.9 0.27 9.1E-06 46.8 5.7 38 186-225 2-39 (269)
346 2pjz_A Hypothetical protein ST 90.9 0.11 3.9E-06 49.4 3.0 23 185-207 30-52 (263)
347 3nh6_A ATP-binding cassette SU 90.9 0.1 3.5E-06 50.9 2.7 24 184-207 79-102 (306)
348 1c1y_A RAS-related protein RAP 90.9 0.11 3.8E-06 45.0 2.7 22 187-208 5-26 (167)
349 3vr4_D V-type sodium ATPase su 90.9 0.18 6.3E-06 51.4 4.6 89 185-274 151-257 (465)
350 2cxx_A Probable GTP-binding pr 90.9 0.12 4.1E-06 46.0 3.0 22 187-208 3-24 (190)
351 1z0j_A RAB-22, RAS-related pro 90.9 0.11 3.9E-06 45.1 2.8 23 186-208 7-29 (170)
352 2www_A Methylmalonic aciduria 90.8 0.13 4.4E-06 51.3 3.4 24 184-207 73-96 (349)
353 3ihw_A Centg3; RAS, centaurin, 90.8 0.11 3.9E-06 46.2 2.8 24 185-208 20-43 (184)
354 1g16_A RAS-related protein SEC 90.8 0.12 4.1E-06 44.9 2.9 23 186-208 4-26 (170)
355 1r8s_A ADP-ribosylation factor 90.8 0.12 4E-06 44.8 2.7 21 188-208 3-23 (164)
356 1ky3_A GTP-binding protein YPT 90.7 0.12 4E-06 45.6 2.8 25 184-208 7-31 (182)
357 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.12 4.1E-06 45.3 2.8 24 185-208 7-30 (177)
358 1p5z_B DCK, deoxycytidine kina 90.6 0.092 3.2E-06 50.0 2.1 25 183-207 22-46 (263)
359 4tmk_A Protein (thymidylate ki 90.6 0.37 1.3E-05 44.2 6.1 24 186-209 4-27 (213)
360 2fn4_A P23, RAS-related protei 90.6 0.15 5.1E-06 44.9 3.3 26 183-208 7-32 (181)
361 3v9p_A DTMP kinase, thymidylat 90.6 0.25 8.6E-06 45.8 5.0 25 184-208 24-48 (227)
362 3tw8_B RAS-related protein RAB 90.6 0.12 4.1E-06 45.5 2.7 26 183-208 7-32 (181)
363 2iwr_A Centaurin gamma 1; ANK 90.6 0.11 3.7E-06 45.8 2.4 23 186-208 8-30 (178)
364 1pui_A ENGB, probable GTP-bind 90.6 0.093 3.2E-06 47.8 2.0 26 183-208 24-49 (210)
365 3c5c_A RAS-like protein 12; GD 90.6 0.12 4.3E-06 46.1 2.8 24 185-208 21-44 (187)
366 1tf7_A KAIC; homohexamer, hexa 90.5 0.43 1.5E-05 50.5 7.3 25 184-208 280-304 (525)
367 3fvq_A Fe(3+) IONS import ATP- 90.5 0.15 5.2E-06 50.7 3.6 23 185-207 30-52 (359)
368 3mfy_A V-type ATP synthase alp 90.5 0.72 2.5E-05 48.1 8.7 59 169-236 216-275 (588)
369 1f6b_A SAR1; gtpases, N-termin 90.5 0.15 5.1E-06 46.1 3.3 23 186-208 26-48 (198)
370 2hxs_A RAB-26, RAS-related pro 90.5 0.18 6.1E-06 44.3 3.7 24 185-208 6-29 (178)
371 2zts_A Putative uncharacterize 90.5 0.15 5.2E-06 47.7 3.5 49 184-235 29-77 (251)
372 2afh_E Nitrogenase iron protei 90.5 0.31 1.1E-05 46.9 5.8 38 186-225 3-40 (289)
373 1fx0_A ATP synthase alpha chai 90.4 0.19 6.5E-06 52.0 4.3 84 185-274 163-264 (507)
374 1m2o_B GTP-binding protein SAR 90.4 0.13 4.5E-06 46.1 2.8 23 186-208 24-46 (190)
375 1r2q_A RAS-related protein RAB 90.4 0.13 4.5E-06 44.6 2.7 23 186-208 7-29 (170)
376 2j9r_A Thymidine kinase; TK1, 90.3 0.26 8.8E-06 45.1 4.7 111 184-305 27-138 (214)
377 2qm8_A GTPase/ATPase; G protei 90.3 0.16 5.4E-06 50.4 3.5 25 183-207 53-77 (337)
378 2yv5_A YJEQ protein; hydrolase 90.3 0.2 6.9E-06 48.8 4.2 32 166-206 155-186 (302)
379 2bme_A RAB4A, RAS-related prot 90.3 0.14 4.8E-06 45.4 2.9 24 185-208 10-33 (186)
380 2y8e_A RAB-protein 6, GH09086P 90.3 0.14 4.8E-06 44.9 2.9 23 186-208 15-37 (179)
381 2cjw_A GTP-binding protein GEM 90.3 0.14 4.8E-06 46.1 2.8 22 186-207 7-28 (192)
382 4dsu_A GTPase KRAS, isoform 2B 90.2 0.14 4.7E-06 45.5 2.8 23 186-208 5-27 (189)
383 3cbq_A GTP-binding protein REM 90.2 0.12 4.2E-06 46.6 2.4 24 184-207 22-45 (195)
384 3tui_C Methionine import ATP-b 90.1 0.17 5.7E-06 50.5 3.5 24 184-207 53-76 (366)
385 2c61_A A-type ATP synthase non 90.1 0.21 7.2E-06 51.3 4.3 90 184-274 151-258 (469)
386 1z0f_A RAB14, member RAS oncog 90.1 0.14 4.9E-06 44.9 2.7 25 184-208 14-38 (179)
387 3t5g_A GTP-binding protein RHE 90.1 0.15 5.1E-06 45.0 2.9 24 185-208 6-29 (181)
388 4bas_A ADP-ribosylation factor 90.1 0.15 5E-06 45.8 2.8 27 182-208 14-40 (199)
389 3kkq_A RAS-related protein M-R 90.1 0.15 5E-06 45.2 2.8 25 184-208 17-41 (183)
390 1mh1_A RAC1; GTP-binding, GTPa 90.0 0.15 5E-06 45.2 2.8 23 186-208 6-28 (186)
391 3oaa_A ATP synthase subunit al 90.0 1.2 4.2E-05 45.9 9.8 85 184-274 161-263 (513)
392 1upt_A ARL1, ADP-ribosylation 90.0 0.18 6.2E-06 43.8 3.3 25 184-208 6-30 (171)
393 3bc1_A RAS-related protein RAB 90.0 0.14 5E-06 45.5 2.7 24 185-208 11-34 (195)
394 3t1o_A Gliding protein MGLA; G 90.0 0.14 4.9E-06 45.7 2.7 23 185-207 14-36 (198)
395 2qu8_A Putative nucleolar GTP- 90.0 0.19 6.4E-06 46.6 3.5 26 183-208 27-52 (228)
396 3bwd_D RAC-like GTP-binding pr 89.9 0.15 5.3E-06 44.9 2.8 24 185-208 8-31 (182)
397 3io3_A DEHA2D07832P; chaperone 89.8 0.37 1.3E-05 47.9 5.7 42 183-224 16-57 (348)
398 1z47_A CYSA, putative ABC-tran 89.8 0.16 5.5E-06 50.6 3.1 23 185-207 41-63 (355)
399 2efe_B Small GTP-binding prote 89.8 0.16 5.4E-06 44.8 2.8 24 185-208 12-35 (181)
400 2oil_A CATX-8, RAS-related pro 89.8 0.15 5.1E-06 45.6 2.7 24 185-208 25-48 (193)
401 2a9k_A RAS-related protein RAL 89.8 0.16 5.4E-06 45.0 2.8 24 185-208 18-41 (187)
402 2e87_A Hypothetical protein PH 89.8 0.5 1.7E-05 47.2 6.7 26 183-208 165-190 (357)
403 2h92_A Cytidylate kinase; ross 89.8 0.15 5.2E-06 46.8 2.8 22 186-207 4-25 (219)
404 2yyz_A Sugar ABC transporter, 89.8 0.19 6.4E-06 50.2 3.5 23 185-207 29-51 (359)
405 2bov_A RAla, RAS-related prote 89.7 0.16 5.4E-06 45.9 2.8 25 184-208 13-37 (206)
406 1gwn_A RHO-related GTP-binding 89.7 0.16 5.6E-06 46.2 2.9 24 185-208 28-51 (205)
407 2atv_A RERG, RAS-like estrogen 89.7 0.16 5.5E-06 45.6 2.8 24 185-208 28-51 (196)
408 1tq4_A IIGP1, interferon-induc 89.7 0.18 6.1E-06 51.3 3.3 24 184-207 68-91 (413)
409 2it1_A 362AA long hypothetical 89.7 0.19 6.5E-06 50.2 3.5 23 185-207 29-51 (362)
410 2fg5_A RAB-22B, RAS-related pr 89.7 0.17 5.8E-06 45.4 2.9 24 185-208 23-46 (192)
411 3rlf_A Maltose/maltodextrin im 89.6 0.19 6.6E-06 50.4 3.5 23 185-207 29-51 (381)
412 2ew1_A RAS-related protein RAB 89.6 0.17 5.7E-06 46.0 2.8 24 185-208 26-49 (201)
413 1ksh_A ARF-like protein 2; sma 89.6 0.17 5.7E-06 44.9 2.8 26 184-209 17-42 (186)
414 2fh5_B SR-beta, signal recogni 89.6 0.18 6.1E-06 46.0 3.0 25 184-208 6-30 (214)
415 2p67_A LAO/AO transport system 89.6 0.2 6.7E-06 49.8 3.5 25 183-207 54-78 (341)
416 1zbd_A Rabphilin-3A; G protein 89.6 0.17 5.9E-06 45.6 2.9 24 185-208 8-31 (203)
417 2g6b_A RAS-related protein RAB 89.6 0.17 5.7E-06 44.6 2.7 24 185-208 10-33 (180)
418 1moz_A ARL1, ADP-ribosylation 89.6 0.17 5.7E-06 44.7 2.7 25 184-208 17-41 (183)
419 2b6h_A ADP-ribosylation factor 89.6 0.17 5.7E-06 45.5 2.8 24 185-208 29-52 (192)
420 3k53_A Ferrous iron transport 89.5 0.19 6.5E-06 48.1 3.3 24 185-208 3-26 (271)
421 1vg8_A RAS-related protein RAB 89.5 0.17 5.7E-06 45.8 2.8 25 184-208 7-31 (207)
422 3iqw_A Tail-anchored protein t 89.5 0.4 1.4E-05 47.3 5.7 41 183-225 14-54 (334)
423 3iev_A GTP-binding protein ERA 89.5 0.16 5.5E-06 49.7 2.8 27 182-208 7-33 (308)
424 2qnr_A Septin-2, protein NEDD5 89.5 0.16 5.4E-06 49.5 2.7 21 187-207 20-40 (301)
425 3dz8_A RAS-related protein RAB 89.5 0.17 6E-06 45.2 2.8 24 185-208 23-46 (191)
426 3oes_A GTPase rhebl1; small GT 89.5 0.17 5.9E-06 45.7 2.8 25 184-208 23-47 (201)
427 2o52_A RAS-related protein RAB 89.4 0.18 6.3E-06 45.5 3.0 24 185-208 25-48 (200)
428 3clv_A RAB5 protein, putative; 89.4 0.17 5.9E-06 45.4 2.8 24 185-208 7-30 (208)
429 2axn_A 6-phosphofructo-2-kinas 89.4 0.18 6.3E-06 53.1 3.4 24 184-207 34-57 (520)
430 2gf9_A RAS-related protein RAB 89.4 0.18 6E-06 45.0 2.8 24 185-208 22-45 (189)
431 4dkx_A RAS-related protein RAB 89.4 0.17 5.9E-06 46.6 2.8 22 187-208 15-36 (216)
432 2g3y_A GTP-binding protein GEM 89.4 0.18 6.1E-06 46.3 2.8 23 185-207 37-59 (211)
433 1v43_A Sugar-binding transport 89.4 0.21 7.1E-06 50.1 3.5 23 185-207 37-59 (372)
434 3tkl_A RAS-related protein RAB 89.4 0.2 6.8E-06 44.8 3.1 24 185-208 16-39 (196)
435 3reg_A RHO-like small GTPase; 89.3 0.18 6.1E-06 45.2 2.8 24 185-208 23-46 (194)
436 4dhe_A Probable GTP-binding pr 89.3 0.18 6.1E-06 46.3 2.8 27 183-209 27-53 (223)
437 1ega_A Protein (GTP-binding pr 89.3 0.19 6.5E-06 49.0 3.1 25 184-208 7-31 (301)
438 2q3h_A RAS homolog gene family 89.3 0.18 6.3E-06 45.4 2.9 25 184-208 19-43 (201)
439 1zd9_A ADP-ribosylation factor 89.3 0.18 6E-06 45.0 2.7 23 186-208 23-45 (188)
440 3d31_A Sulfate/molybdate ABC t 89.3 0.17 5.9E-06 50.3 2.8 23 185-207 26-48 (348)
441 3llu_A RAS-related GTP-binding 89.3 0.22 7.5E-06 44.8 3.4 26 183-208 18-43 (196)
442 2h17_A ADP-ribosylation factor 89.3 0.18 6.3E-06 44.6 2.8 25 184-208 20-44 (181)
443 1w36_D RECD, exodeoxyribonucle 89.2 0.49 1.7E-05 50.9 6.6 22 186-207 165-186 (608)
444 1g29_1 MALK, maltose transport 89.2 0.19 6.4E-06 50.5 3.1 23 185-207 29-51 (372)
445 2gf0_A GTP-binding protein DI- 89.2 0.19 6.3E-06 45.1 2.8 25 184-208 7-31 (199)
446 3vr4_A V-type sodium ATPase ca 89.2 1.4 4.8E-05 46.2 9.6 58 169-235 221-279 (600)
447 2a5j_A RAS-related protein RAB 89.2 0.18 6.3E-06 45.0 2.7 24 185-208 21-44 (191)
448 2ewv_A Twitching motility prot 89.2 0.2 7E-06 50.3 3.3 106 184-307 135-246 (372)
449 1lw7_A Transcriptional regulat 89.2 0.18 6.1E-06 50.7 2.9 23 185-207 170-192 (365)
450 1jwy_B Dynamin A GTPase domain 89.1 0.4 1.4E-05 46.7 5.4 26 183-208 22-47 (315)
451 1oxx_K GLCV, glucose, ABC tran 89.1 0.16 5.5E-06 50.6 2.5 23 185-207 31-53 (353)
452 3vkw_A Replicase large subunit 89.1 0.69 2.4E-05 47.2 7.1 26 182-207 158-183 (446)
453 1z06_A RAS-related protein RAB 89.1 0.19 6.5E-06 44.8 2.8 24 185-208 20-43 (189)
454 2il1_A RAB12; G-protein, GDP, 89.1 0.18 6.2E-06 45.2 2.6 23 186-208 27-49 (192)
455 2bcg_Y Protein YP2, GTP-bindin 89.1 0.2 6.7E-06 45.4 2.9 24 185-208 8-31 (206)
456 2j1l_A RHO-related GTP-binding 89.0 0.2 6.9E-06 45.8 3.0 23 186-208 35-57 (214)
457 3tqf_A HPR(Ser) kinase; transf 89.0 0.23 7.9E-06 43.6 3.1 22 186-207 17-38 (181)
458 3lxx_A GTPase IMAP family memb 89.0 0.2 6.9E-06 46.8 3.0 25 184-208 28-52 (239)
459 2p5s_A RAS and EF-hand domain 89.0 0.19 6.6E-06 45.3 2.7 25 184-208 27-51 (199)
460 1x3s_A RAS-related protein RAB 89.0 0.2 6.7E-06 44.7 2.8 23 186-208 16-38 (195)
461 2h57_A ADP-ribosylation factor 88.9 0.18 6.2E-06 45.0 2.5 25 185-209 21-45 (190)
462 2rcn_A Probable GTPase ENGC; Y 88.9 0.21 7.2E-06 49.7 3.1 22 186-207 216-237 (358)
463 1u0l_A Probable GTPase ENGC; p 88.8 0.33 1.1E-05 47.2 4.5 33 166-207 159-191 (301)
464 1zj6_A ADP-ribosylation factor 88.8 0.28 9.4E-06 43.6 3.7 25 184-208 15-39 (187)
465 3gmt_A Adenylate kinase; ssgci 88.8 0.2 6.8E-06 46.5 2.7 24 185-208 8-31 (230)
466 2obl_A ESCN; ATPase, hydrolase 88.7 0.21 7.4E-06 49.6 3.1 25 184-208 70-94 (347)
467 3b1v_A Ferrous iron uptake tra 88.7 0.26 8.9E-06 47.2 3.6 23 186-208 4-26 (272)
468 1f2t_A RAD50 ABC-ATPase; DNA d 88.7 0.27 9.2E-06 42.3 3.3 23 185-207 23-45 (149)
469 2gza_A Type IV secretion syste 88.7 0.21 7E-06 50.1 2.9 22 186-207 176-197 (361)
470 2fz4_A DNA repair protein RAD2 88.7 0.83 2.8E-05 42.6 7.0 101 188-302 111-226 (237)
471 3gd7_A Fusion complex of cysti 88.7 0.26 8.7E-06 49.8 3.6 24 184-207 46-69 (390)
472 3kjh_A CO dehydrogenase/acetyl 88.6 0.38 1.3E-05 45.0 4.7 39 188-228 3-41 (254)
473 4gzl_A RAS-related C3 botulinu 88.6 0.22 7.5E-06 45.2 2.9 24 185-208 30-53 (204)
474 2j0v_A RAC-like GTP-binding pr 88.6 0.22 7.4E-06 45.3 2.9 24 185-208 9-32 (212)
475 2atx_A Small GTP binding prote 88.6 0.22 7.5E-06 44.5 2.9 23 186-208 19-41 (194)
476 3ch4_B Pmkase, phosphomevalona 88.6 0.3 1E-05 44.2 3.6 25 183-207 9-33 (202)
477 2fv8_A H6, RHO-related GTP-bin 88.6 0.22 7.5E-06 45.2 2.9 23 186-208 26-48 (207)
478 2hup_A RAS-related protein RAB 88.6 0.22 7.6E-06 45.0 2.9 24 185-208 29-52 (201)
479 2xau_A PRE-mRNA-splicing facto 88.5 0.91 3.1E-05 50.3 8.3 35 165-207 97-131 (773)
480 4dzz_A Plasmid partitioning pr 88.5 0.39 1.3E-05 43.4 4.5 39 186-226 2-41 (206)
481 3iby_A Ferrous iron transport 88.5 0.23 7.9E-06 47.1 3.0 23 186-208 2-24 (256)
482 3fkq_A NTRC-like two-domain pr 88.3 0.43 1.5E-05 48.0 5.1 41 182-224 140-181 (373)
483 3cph_A RAS-related protein SEC 88.3 0.23 7.7E-06 45.2 2.8 25 184-208 19-43 (213)
484 2fu5_C RAS-related protein RAB 88.3 0.14 4.9E-06 45.2 1.4 24 185-208 8-31 (183)
485 2gco_A H9, RHO-related GTP-bin 88.3 0.24 8.1E-06 44.8 2.9 23 186-208 26-48 (201)
486 2xtp_A GTPase IMAP family memb 88.3 0.28 9.5E-06 46.5 3.5 25 184-208 21-45 (260)
487 2pt7_A CAG-ALFA; ATPase, prote 88.2 0.22 7.7E-06 49.1 2.8 106 186-307 172-277 (330)
488 1bif_A 6-phosphofructo-2-kinas 88.2 0.24 8.3E-06 51.6 3.2 25 184-208 38-62 (469)
489 4hlc_A DTMP kinase, thymidylat 88.2 0.36 1.2E-05 44.0 4.0 23 186-208 3-25 (205)
490 4b3f_X DNA-binding protein smu 88.1 0.52 1.8E-05 51.2 5.9 61 166-237 194-254 (646)
491 3zq6_A Putative arsenical pump 88.1 0.67 2.3E-05 45.5 6.2 43 185-229 14-56 (324)
492 2qag_B Septin-6, protein NEDD5 88.0 0.25 8.5E-06 50.4 3.0 20 188-207 45-64 (427)
493 3q3j_B RHO-related GTP-binding 88.0 0.24 8.3E-06 45.3 2.8 24 185-208 27-50 (214)
494 2x77_A ADP-ribosylation factor 88.0 0.21 7.1E-06 44.5 2.2 25 184-208 21-45 (189)
495 1x6v_B Bifunctional 3'-phospho 88.0 0.28 9.7E-06 52.5 3.6 24 184-207 51-74 (630)
496 1m8p_A Sulfate adenylyltransfe 87.9 0.46 1.6E-05 50.6 5.2 26 183-208 394-419 (573)
497 2f7s_A C25KG, RAS-related prot 87.9 0.26 8.8E-06 45.0 2.9 24 185-208 25-48 (217)
498 3cr8_A Sulfate adenylyltranfer 87.8 0.22 7.4E-06 52.8 2.5 24 184-207 368-391 (552)
499 1t9h_A YLOQ, probable GTPase E 87.7 0.17 5.7E-06 49.4 1.5 22 186-207 174-195 (307)
500 3fdi_A Uncharacterized protein 87.7 0.31 1E-05 44.3 3.2 23 185-207 6-28 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-51 Score=445.86 Aligned_cols=349 Identities=16% Similarity=0.201 Sum_probs=261.3
Q ss_pred Cccccc-cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc--ccchhccccceEEEEeCCCC--Ch
Q 045012 155 LKNVIS-DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN--DDRVQRHFEIKAWTCVSEDF--DV 229 (576)
Q Consensus 155 ~~~~~~-vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~ 229 (576)
++..+. +||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.++..+|+.++|+++++.+ ++
T Consensus 124 ~p~~~~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 124 VPKQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CBCCCCSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCCCCccCCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 343333 799999999999997652 34689999999999999999999998 67889999999999999885 78
Q ss_pred hHHHHHHHHhhhCCCC------CCCCCHHHHHHHHHHhhcCC-eEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe
Q 045012 230 SRVTQSILKSIANDHS------KNDDDLNLLQEKLKKQLSGK-KFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 230 ~~~~~~il~~l~~~~~------~~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 302 (576)
..++..|+.+++.... ....+.+.+...+++.|.++ |+||||||||+.+...|... +||+|||||
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTT 272 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEE
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEc
Confidence 9999999999986521 02235677889999999996 99999999998643334322 699999999
Q ss_pred cchHHHHhhh-cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhH
Q 045012 303 RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDW 381 (576)
Q Consensus 303 R~~~v~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w 381 (576)
|+..++..++ ...+|++++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ . ..|
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~ 347 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEK 347 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHH
T ss_pred CCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHH
Confidence 9999988775 336799999999999999999987643 246788899999999999999999999999765 2 233
Q ss_pred HHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHH-----------HhccCCCCCcccHHHHHHHHHHc--CCCccC
Q 045012 382 EFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFA-----------YCSLFPKDYEFQEEEIILLWAAE--GFLHQE 448 (576)
Q Consensus 382 ~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~-----------~ls~fp~~~~i~~~~Li~~w~ae--g~i~~~ 448 (576)
...+.+..+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+...
T Consensus 348 ~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~ 421 (549)
T 2a5y_B 348 MAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSN 421 (549)
T ss_dssp HHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-----
T ss_pred HHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccC
Confidence 33333333221 2356899999999999999999999 999999999999 8999999 999876
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCceeeCC-CcCeEEEchHHHHHHHHHhccccEEEec-----CCcccccccCCCCeeEEE
Q 045012 449 NSGRKMEDLGRKFVRELHSRSLFQQSSK-DASRFVMHDLINDLARWAAGEQYFRMED-----TLAGENRQKFSQSLHHFS 522 (576)
Q Consensus 449 ~~~~~~e~~~~~~l~~L~~rsll~~~~~-~~~~~~mH~lv~~~a~~~~~~e~~~~~~-----~~~~~~~~~~~~~~r~ls 522 (576)
..+.+.+++++ ||++|+++|||+.... +..+|+|||+||+||++++.++++.-.. .-........+...||++
T Consensus 422 ~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~r~~~ 500 (549)
T 2a5y_B 422 EEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIP 500 (549)
T ss_dssp --CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHTTSTTTSSCC-------------
T ss_pred CCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhh
Confidence 54667788887 9999999999998653 4568999999999999999887652000 000001223456678887
Q ss_pred EEeC
Q 045012 523 YIRG 526 (576)
Q Consensus 523 i~~~ 526 (576)
.+..
T Consensus 501 ~~~~ 504 (549)
T 2a5y_B 501 SHFQ 504 (549)
T ss_dssp ----
T ss_pred hhhh
Confidence 7654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-40 Score=366.74 Aligned_cols=284 Identities=19% Similarity=0.254 Sum_probs=229.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccc-eEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEI-KAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+||+.++++|.++|... +..++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..|+..
T Consensus 131 VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999753 24789999999999999999999998788999996 8999999999988888888775
Q ss_pred hhCCC---CCC-------CCCHHHHHHHHHHhh---cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH
Q 045012 240 IANDH---SKN-------DDDLNLLQEKLKKQL---SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 240 l~~~~---~~~-------~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
++... ... +.+.+.+...++..| .++|+||||||+|+. ..|..+ + +||+||||||+..
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChH
Confidence 43211 101 123455667777766 689999999999984 566554 2 6899999999999
Q ss_pred HHHhhhcccceecC------CCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCC-Chh
Q 045012 307 VAATMRAVSGKTLK------ELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKD-DLN 379 (576)
Q Consensus 307 v~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~-~~~ 379 (576)
++..+.....+.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. +..
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 88755544567777 999999999999883 322 1 1233333 9999999999999999874 566
Q ss_pred hHHHHHhhccccCCCCcccchhhhhhhhcCCcHHH-HHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHH
Q 045012 380 DWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQL-KRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLG 458 (576)
Q Consensus 380 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~ 458 (576)
.|... ....+..+|.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| ++.+
T Consensus 346 eW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 346 NWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 77642 23568999999999999999 99999999999999999999999998876 1348
Q ss_pred HHHHHHHHHCCCceeeCCCcCeEEEchHHHHHH
Q 045012 459 RKFVRELHSRSLFQQSSKDASRFVMHDLINDLA 491 (576)
Q Consensus 459 ~~~l~~L~~rsll~~~~~~~~~~~mH~lv~~~a 491 (576)
+.+|++|+++|||+... +..+|+||||+++++
T Consensus 405 e~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 88999999999999853 456899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.4e-39 Score=380.90 Aligned_cols=308 Identities=21% Similarity=0.318 Sum_probs=246.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch-hccc-cceEEEEeCCCCC--hhHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV-QRHF-EIKAWTCVSEDFD--VSRVTQS 235 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~ 235 (576)
.+||++++++|.++|... ++..++|+|+||||+||||||++++++.+. ..+| +.++|+++++..+ ....+..
T Consensus 126 ~vgR~~~~~~l~~~l~~~----~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL----NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT----TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhc----cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 489999999999999754 356799999999999999999999997543 4445 5667999988543 3445667
Q ss_pred HHHhhhCCCC---CCCCCHHHHHHHHHHhhcCC--eEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHHh
Q 045012 236 ILKSIANDHS---KNDDDLNLLQEKLKKQLSGK--KFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAAT 310 (576)
Q Consensus 236 il~~l~~~~~---~~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 310 (576)
++..+..... ....+.+.+.+.++..+.++ |+||||||+|+. ..|..+ .+|++||||||++.++..
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 7777765432 13567888999999999887 999999999975 344432 478999999999988854
Q ss_pred -hhcccceecCC-CChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHHhhc
Q 045012 311 -MRAVSGKTLKE-LSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVLNTN 388 (576)
Q Consensus 311 -~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l~~~ 388 (576)
......+++.+ |+++++++||...++... +.+.+++++|+++|+|+||||+++|++|+.++ ..|...++..
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l 345 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQL 345 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHH
Confidence 44567889996 999999999998874432 23346789999999999999999999998875 4677766543
Q ss_pred cccC----C----CCcccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHHHHH
Q 045012 389 LWDL----Q----EDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDLGRK 460 (576)
Q Consensus 389 ~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~~~~ 460 (576)
.... . .....+..+|.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++ ++.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~ 413 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVED 413 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHH
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHH
Confidence 2211 1 1124588999999999999999999999999999999999999999543 466899
Q ss_pred HHHHHHHCCCceeeCC-CcCeEEEchHHHHHHHHHhcccc
Q 045012 461 FVRELHSRSLFQQSSK-DASRFVMHDLINDLARWAAGEQY 499 (576)
Q Consensus 461 ~l~~L~~rsll~~~~~-~~~~~~mH~lv~~~a~~~~~~e~ 499 (576)
+|++|+++||++.... +..+|+||++||+|++..+.++.
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 9999999999997653 33469999999999999987653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=330.66 Aligned_cols=303 Identities=23% Similarity=0.354 Sum_probs=232.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch-hcccc-ceEEEEeCCCCChhHHHHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV-QRHFE-IKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~-~~~wv~~~~~~~~~~~~~~i 236 (576)
..|||+.++++|.++|... .++.++|+|+||||+||||||.+++++.++ ..+|+ .++|++++.. +...++..+
T Consensus 125 ~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 3599999999999999753 245789999999999999999999997665 78895 7999999765 333344333
Q ss_pred ---HHhhhCCC---CCCCCCHHHHHHHHHHhhcC--CeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHH
Q 045012 237 ---LKSIANDH---SKNDDDLNLLQEKLKKQLSG--KKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA 308 (576)
Q Consensus 237 ---l~~l~~~~---~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 308 (576)
+..++... .....+.+.+...++..+.+ +++||||||+|+.. .+. .+ .+|++||||||+..++
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~----~l---~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK----AF---DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH----TT---CSSCEEEEEESCGGGG
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH----Hh---cCCCeEEEECCCcHHH
Confidence 34444211 11345677888888888876 78999999998742 332 22 4689999999999877
Q ss_pred Hhhhcccceec---CCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccCCChhhHHHHH
Q 045012 309 ATMRAVSGKTL---KELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFVL 385 (576)
Q Consensus 309 ~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~l 385 (576)
..+. ...+.+ ++|+.+++++||...++... ....+.+.+|+++|+|+||||.++|+.++..+ ..|...+
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l 342 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYL 342 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHH
Confidence 6543 233444 58999999999999876421 12235788999999999999999999998864 4687766
Q ss_pred hhccccC--------CCCcccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCCCCCHHHH
Q 045012 386 NTNLWDL--------QEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENSGRKMEDL 457 (576)
Q Consensus 386 ~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~e~~ 457 (576)
+...... .....++..++..||+.||++.|.||.+||+||+++.|+.+.+..+|.++ .+.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~ 410 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEE 410 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHH
Confidence 5432111 11224688899999999999999999999999999999999999999432 345
Q ss_pred HHHHHHHHHHCCCceeeC-CCcCeEEEchHHHHHHHHHh
Q 045012 458 GRKFVRELHSRSLFQQSS-KDASRFVMHDLINDLARWAA 495 (576)
Q Consensus 458 ~~~~l~~L~~rsll~~~~-~~~~~~~mH~lv~~~a~~~~ 495 (576)
+.+++++|+++|||+... +...+|+||++||++++...
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 788999999999998654 23458999999999999874
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=3.2e-17 Score=171.12 Aligned_cols=313 Identities=11% Similarity=-0.015 Sum_probs=185.0
Q ss_pred ccccchhHHHHHHHH-hcCCCCCCCCCcEEEE--eecCcCcHHHHHHHHhcccchhc---ccc-ceEEEEeCCCCChhHH
Q 045012 160 SDGKEKDKEEIVELL-LRDDLRPDNGLSVYSI--HGLGGVGKTTLAQLVYNDDRVQR---HFE-IKAWTCVSEDFDVSRV 232 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~~~~~~~~~~ 232 (576)
.+||+.++++|.++| ...........+.+.| +|++|+|||||++.+++...... .+. ..+|+++....+...+
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTI 103 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHH
Confidence 489999999999988 5321100023467777 99999999999999997432210 122 3567777667788899
Q ss_pred HHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCC------hhhhhhhccCCCCC---C--CCceEE
Q 045012 233 TQSILKSIANDHSKNDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN------YNSWCTLSCPFGAG---A--SGSKIV 299 (576)
Q Consensus 233 ~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~il 299 (576)
+..++.+++........+...+...+...+. +++++|||||+|... ...+..+...+... . ....+|
T Consensus 104 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI 183 (412)
T 1w5s_A 104 LSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFL 183 (412)
T ss_dssp HHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEE
Confidence 9999999876543223345566666666664 779999999997732 23333333333211 2 345578
Q ss_pred EEecchHHHHhhh---------cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcC------CChHH
Q 045012 300 VTHRNQDVAATMR---------AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCK------GLPLA 364 (576)
Q Consensus 300 vTtR~~~v~~~~~---------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~------G~PLa 364 (576)
+||+...+...+. ....+.+.+++.++.+++|...+....... ....+....|++.|+ |+|..
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 184 LVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHH
Confidence 7887655332111 112389999999999999976542111000 111366788999999 99976
Q ss_pred HHHHHHhhc-----cC---CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCC--CCCcccHHH
Q 045012 365 AKTLGGLLS-----VK---DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFP--KDYEFQEEE 434 (576)
Q Consensus 365 i~~~~~~L~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp--~~~~i~~~~ 434 (576)
+..+..... .. -+.+.+........ . ...+..++..||++.+.++..++.+. .+..++...
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~-----~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A-----ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c-----cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 655543221 11 12222332222110 0 23445577889999999999998753 333555555
Q ss_pred HHHHHH--H-cCCCccCCCCCCHHHHHHHHHHHHHHCCCceeeC---CCcCeEEEchHH
Q 045012 435 IILLWA--A-EGFLHQENSGRKMEDLGRKFVRELHSRSLFQQSS---KDASRFVMHDLI 487 (576)
Q Consensus 435 Li~~w~--a-eg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~---~~~~~~~mH~lv 487 (576)
+...+. + +-+ .. ..........+++.|+..+||.... +...+|++|.+.
T Consensus 333 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 333 LRQRYEDASLTMY-NV---KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHS-CC---CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHhhc-CC---CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 554442 2 111 00 0112345678899999999998753 223346566554
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.74 E-value=8.4e-17 Score=163.94 Aligned_cols=289 Identities=12% Similarity=0.099 Sum_probs=178.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC------ChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF------DVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 233 (576)
.+||+.++++|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +...++
T Consensus 14 ~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 14 IFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred cCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 49999999999999853 1 699999999999999999998742 1 6677764332 455666
Q ss_pred HHHHHhhhC-----------------CCCCCCCCHHHHHHHHHHhhcC-CeEEEEEeCCCCCCh------hhhhhhccCC
Q 045012 234 QSILKSIAN-----------------DHSKNDDDLNLLQEKLKKQLSG-KKFLLVLDDVWNENY------NSWCTLSCPF 289 (576)
Q Consensus 234 ~~il~~l~~-----------------~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~~~l~~~l 289 (576)
..+...+.. .......+...+...+...... ++++|||||+++.+. ..+......+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 666655432 0000124566666666665543 399999999987432 1222222222
Q ss_pred CCCCCCceEEEEecchHHHHhh-----------h-cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHh
Q 045012 290 GAGASGSKIVVTHRNQDVAATM-----------R-AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKK 357 (576)
Q Consensus 290 ~~~~~gs~ilvTtR~~~v~~~~-----------~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~ 357 (576)
....++..+|+|++.......+ + ....+.+.+|+.+|+.+++.......+. ... .+.+..|++.
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~~i~~~ 234 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIEEAVEL 234 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHH
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHH
Confidence 1122477899998876432211 1 1236889999999999999775432221 111 3567889999
Q ss_pred cCCChHHHHHHHHhhccCCChhhHH-HHHhhccccCCCCcccchhhhhhhhcCC---cHHHHHHHHHhccCCCCCcccHH
Q 045012 358 CKGLPLAAKTLGGLLSVKDDLNDWE-FVLNTNLWDLQEDKCDIVPALRVSYHFL---PPQLKRCFAYCSLFPKDYEFQEE 433 (576)
Q Consensus 358 c~G~PLai~~~~~~L~~~~~~~~w~-~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~~~~ls~fp~~~~i~~~ 433 (576)
|+|+|+++..++..+....+...+. ...+. +...+.-.+..+ ++..+..+..+|. . .++..
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g--~~~~~ 299 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL--G--YNRWS 299 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--T--CCSHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh--C--CCCHH
Confidence 9999999999987643221221111 11110 111111122223 7889999999998 2 23445
Q ss_pred HHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHHHCCCceeeCCCcCeEE-EchHHHHHHH
Q 045012 434 EIILLWAAEGFLHQENSGRKMEDLGRKFVRELHSRSLFQQSSKDASRFV-MHDLINDLAR 492 (576)
Q Consensus 434 ~Li~~w~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~-mH~lv~~~a~ 492 (576)
.+....... . ++. .......+++.|++.+||....+ .|. .|++++++.+
T Consensus 300 ~l~~~~~~~-~-----~~~-~~~~~~~~l~~L~~~gli~~~~~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVK-G-----TKI-PEPRLYALLENLKKMNWIVEEDN---TYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHT-T-----CCC-CHHHHHHHHHHHHHTTSEEEETT---EEEESSHHHHHHHT
T ss_pred HHHHHHHHH-h-----CCC-CHHHHHHHHHHHHhCCCEEecCC---EEEEecHHHHHHHc
Confidence 554433221 1 011 23557889999999999987642 455 4889988764
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=8.7e-16 Score=156.75 Aligned_cols=288 Identities=14% Similarity=0.105 Sum_probs=172.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC-----CChhHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED-----FDVSRVTQ 234 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 234 (576)
.+||+++++.|.+ +. . +++.|+|++|+|||+|++++.+.. .. ..+|+++... .+...++.
T Consensus 15 ~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 15 FFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred hcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHH
Confidence 4999999999999 72 2 699999999999999999998742 22 2578877642 24444554
Q ss_pred HHHHhhhC-------------C-------CC--------CCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh---hhhh
Q 045012 235 SILKSIAN-------------D-------HS--------KNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY---NSWC 283 (576)
Q Consensus 235 ~il~~l~~-------------~-------~~--------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---~~~~ 283 (576)
.+.+.+.. . .. ........+...+.+... ++++|||||+++.+. ..+.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 44443310 0 00 012345556666655433 499999999977431 1222
Q ss_pred hhccCCCCCCCCceEEEEecchHHHHhh----------h-c-ccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHH
Q 045012 284 TLSCPFGAGASGSKIVVTHRNQDVAATM----------R-A-VSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVA 351 (576)
Q Consensus 284 ~l~~~l~~~~~gs~ilvTtR~~~v~~~~----------~-~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~ 351 (576)
.+...+....++..+|+|++........ . . ...+.+.+|+.+++.+++.......+. .. ...
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~---- 232 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY---- 232 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH----
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH----
Confidence 2222222222467899999976532211 1 1 247889999999999999875421111 11 111
Q ss_pred HHHHHhcCCChHHHHHHHHhhccCCChhhHHHH-HhhccccCCCCcccchhhhh-hhh--cCCcHHHHHHHHHhccCCCC
Q 045012 352 EKIAKKCKGLPLAAKTLGGLLSVKDDLNDWEFV-LNTNLWDLQEDKCDIVPALR-VSY--HFLPPQLKRCFAYCSLFPKD 427 (576)
Q Consensus 352 ~~I~~~c~G~PLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~~~~ls~fp~~ 427 (576)
..|++.|+|+|+++..++..+....+...|..- .+.. ...+...+. +.+ ..||+..+..+..+|+ +
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc---C
Confidence 789999999999999998876433222223211 1100 000111111 111 1688999999999998 2
Q ss_pred CcccHHHHHHHHH-HcCCCccCCCCCCHHHHHHHHHHHHHHCCCceeeCCCcCeEE-EchHHHHHH
Q 045012 428 YEFQEEEIILLWA-AEGFLHQENSGRKMEDLGRKFVRELHSRSLFQQSSKDASRFV-MHDLINDLA 491 (576)
Q Consensus 428 ~~i~~~~Li~~w~-aeg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~-mH~lv~~~a 491 (576)
. +...+....- ..|. .........+++.|++.+||....+ .|. .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEGE---KYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESSS---CEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecCC---EEEecCHHHHHhh
Confidence 1 4444432210 1121 0113457789999999999987542 455 588998874
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.65 E-value=2.3e-16 Score=131.94 Aligned_cols=76 Identities=28% Similarity=0.452 Sum_probs=67.1
Q ss_pred HHHHHHHHhhHHH--HHhhhchHHHHHHHHHHHHHHHHHHHHhhcc--ccCChHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 045012 12 FELLIKKLASLEL--FTQHEKLKAGFLKWKDNMEMIQAVLADADDR--QTNDKSVKKWLDMLQNLAYDVEDILDEFETEA 87 (576)
Q Consensus 12 ~~~l~~~l~~~~~--~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~v~~Wl~~lr~~ayd~eD~lD~~~~~~ 87 (576)
++.++++|.+... +.+..||++++++|+++|++|++||.||+.+ +..++.++.|+++||++|||+|||||+|.++.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666644 7778899999999999999999999999987 56899999999999999999999999999886
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=3.1e-13 Score=139.35 Aligned_cols=294 Identities=13% Similarity=0.034 Sum_probs=178.7
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh----ccccceEEEEeCCCCChhHHHH
Q 045012 159 ISDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 159 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
..+||+.+++++..++..... ....+.+.|+|++|+||||||+.+++..... ..-...+|++.....+...++.
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 348999999999998865321 2456789999999999999999999743111 0012356777777778889999
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhh--cCCeEEEEEeCCCCCChh-----hhhhhccCCCCC--CCCceEEEEecch
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYN-----SWCTLSCPFGAG--ASGSKIVVTHRNQ 305 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~-----~~~~l~~~l~~~--~~gs~ilvTtR~~ 305 (576)
.++.+++............+...+...+ .+++.+||||+++..... ....+....... ..+..+|+||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 9999997654433444666666666666 356899999999764321 122222222111 3456777777765
Q ss_pred HHHH----hh-hcc--cceecCCCChHHHHHHHHHhhhC--CCCCCCCchHHHHHHHHHHhcC---CChHH-HHHHHHhh
Q 045012 306 DVAA----TM-RAV--SGKTLKELSDDDCLRVLIQHSLG--AGVFNIRQSLKEVAEKIAKKCK---GLPLA-AKTLGGLL 372 (576)
Q Consensus 306 ~v~~----~~-~~~--~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~~I~~~c~---G~PLa-i~~~~~~L 372 (576)
.... .. ... ..+.+.+++.++..+++...+.. ... ...+ +..+.|++.++ |.|-. +.++..+.
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 2211 11 111 47899999999999999877532 111 1122 34566777777 99943 33332222
Q ss_pred c-----c--CCChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhc-cCCCCCcccHHHHHHHHHH---
Q 045012 373 S-----V--KDDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCS-LFPKDYEFQEEEIILLWAA--- 441 (576)
Q Consensus 373 ~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls-~fp~~~~i~~~~Li~~w~a--- 441 (576)
. . .-+.+.+...+... ....+.-++..||++.+..+..++ ++.....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 1 12334444444322 122455677899999888887776 4432234555543333221
Q ss_pred -cCCCccCCCCCCHHHHHHHHHHHHHHCCCceee
Q 045012 442 -EGFLHQENSGRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 442 -eg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
.| +. ......+..+++.|...|++...
T Consensus 324 ~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 22 11 11245678899999999999874
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=6.4e-13 Score=137.07 Aligned_cols=289 Identities=12% Similarity=-0.018 Sum_probs=177.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh----cc--ccceEEEEeCCCC-ChhHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RH--FEIKAWTCVSEDF-DVSRV 232 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~~~~ 232 (576)
.+||+.+++++.+++..... ....+.+.|+|++|+|||+||+.+++...-. .. ....+|++..... +...+
T Consensus 22 l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 48999999999988865321 2345789999999999999999999742111 01 2345677776666 78888
Q ss_pred HHHHHHhhhCCCC-CCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChh----h-hhhhccCCCCCCCCceEEEEecchH
Q 045012 233 TQSILKSIANDHS-KNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN----S-WCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 233 ~~~il~~l~~~~~-~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~-~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
+..++..+..... ........+...+...+..++.+|||||++..... . ...+.... .+..+|+||+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCc
Confidence 8999988843322 12334466677777777776669999999764221 1 22222222 5778888988653
Q ss_pred HH----Hhh-hc-ccceecCCCChHHHHHHHHHhhhC-CCCCCCCchHHHHHHHHHHhcC---CChH-HHHHHHHhh--c
Q 045012 307 VA----ATM-RA-VSGKTLKELSDDDCLRVLIQHSLG-AGVFNIRQSLKEVAEKIAKKCK---GLPL-AAKTLGGLL--S 373 (576)
Q Consensus 307 v~----~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~-~~~~~~~~~~~~~~~~I~~~c~---G~PL-ai~~~~~~L--~ 373 (576)
.. ... .. ...+.+.+++.++..++|...+.. ......++ +..+.|++.|+ |.|. ++..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21 111 11 248999999999999999987531 11111222 45666777777 9887 444333322 1
Q ss_pred ---cCCChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCC
Q 045012 374 ---VKDDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENS 450 (576)
Q Consensus 374 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~ 450 (576)
..-+.+.+..++... ....+..++..|+++.+..+..++....+..+. ......--..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 123445555554432 123466678899999888888777611101111 11111111222 11
Q ss_pred CCCHHHHHHHHHHHHHHCCCceee
Q 045012 451 GRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 451 ~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
........+++..|..+|++...
T Consensus 317 -~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 -PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11245678899999999999874
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=1.3e-12 Score=135.02 Aligned_cols=295 Identities=12% Similarity=0.034 Sum_probs=184.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcc-ccceEEEEeCCCCChhHHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH-FEIKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.+||+.+++++..++........+..+.+.|+|++|+|||||++.+++. .... -...+|++.+...+...++..++.
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 4899999999999886531101122348999999999999999999874 2222 124567777777778899999999
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCChhhhhhhccCCCCCC----CCceEEEEecchHHHHhhh
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWCTLSCPFGAGA----SGSKIVVTHRNQDVAATMR 312 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTtR~~~v~~~~~ 312 (576)
.++........+...+...+...+. +++.+||||+++..+......+...+.... .+..+|++|+.......+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 8876543233455566666665553 568999999998865555555554443211 3667888887664332221
Q ss_pred -------cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhc---------CCChHHHHHHHHhhc---
Q 045012 313 -------AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKC---------KGLPLAAKTLGGLLS--- 373 (576)
Q Consensus 313 -------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c---------~G~PLai~~~~~~L~--- 373 (576)
....+.+.+++.++..+++...+....... .-..+....|++.+ +|.|..+..+.....
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 123689999999999999987753211000 11236677888888 788765554443221
Q ss_pred ---cC--CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCC---CCCcccHHHHHHHHHH----
Q 045012 374 ---VK--DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFP---KDYEFQEEEIILLWAA---- 441 (576)
Q Consensus 374 ---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp---~~~~i~~~~Li~~w~a---- 441 (576)
.. -+.+......... ....+.-.+..||++.+.++..++.+. .+-.+....+...+..
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 11 1222222222211 112334456778999999888888654 2224566666555433
Q ss_pred cCCCccCCCCCCHHHHHHHHHHHHHHCCCceee
Q 045012 442 EGFLHQENSGRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 442 eg~i~~~~~~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
.|... -......+++++|...|+|...
T Consensus 325 ~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 22111 1234577899999999999874
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.4e-12 Score=134.37 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=173.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc---cceEEEEeCCCCChhHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF---EIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i 236 (576)
.+||+.+++.+.+++..... ....+.+.|+|++|+|||||++.+++. ....+ ...+|++.....+...++..+
T Consensus 22 ~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 48999999999998864311 234578999999999999999999974 33322 245677766666777888888
Q ss_pred HHhhhCCCCCCCCCHHHHHHHHHHhhc--CCeEEEEEeCCCCCC----hhhhhhhccCCCC-CCCCceEEEEecchHHHH
Q 045012 237 LKSIANDHSKNDDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN----YNSWCTLSCPFGA-GASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 237 l~~l~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 309 (576)
+..++........+...+...+...+. +++.+||||+++... ...+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 888865443233345555566665554 458999999996532 2223333222211 223566777887654322
Q ss_pred hhh-----c--ccceecCCCChHHHHHHHHHhhhCC-CCCCCCchHHHHHHHHHHhcC---CChHHHHHHHHhhc-----
Q 045012 310 TMR-----A--VSGKTLKELSDDDCLRVLIQHSLGA-GVFNIRQSLKEVAEKIAKKCK---GLPLAAKTLGGLLS----- 373 (576)
Q Consensus 310 ~~~-----~--~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~~~~~~I~~~c~---G~PLai~~~~~~L~----- 373 (576)
.+. . ...+.+.+++.++..+++...+... ...... .+....|++.++ |.|..+..+.....
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 211 1 1478999999999999998764311 111122 355666777777 99985443332221
Q ss_pred -c--CCChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCCC-C-CcccHHHHHHHH--HH--cCC
Q 045012 374 -V--KDDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPK-D-YEFQEEEIILLW--AA--EGF 444 (576)
Q Consensus 374 -~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~-~-~~i~~~~Li~~w--~a--eg~ 444 (576)
. .-+.+.+..++... ....+.-.+..||+..+..+..++.+-+ + ..+....+.... ++ .|.
T Consensus 255 ~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 12333343333321 1234566778899988888877774321 1 223343332221 11 121
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHCCCceee
Q 045012 445 LHQENSGRKMEDLGRKFVRELHSRSLFQQS 474 (576)
Q Consensus 445 i~~~~~~~~~e~~~~~~l~~L~~rsll~~~ 474 (576)
.+ ........+++.|...|++...
T Consensus 325 -~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 -EA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp -CC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred -CC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 11 1234577889999999999763
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=1.1e-11 Score=118.59 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=119.3
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+||+..++.+..++... ...+.+.|+|++|+||||||+.+++.......+.. ...... .....+...
T Consensus 25 ~~g~~~~~~~l~~~l~~~-----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~ 92 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVC-DNCREIEQG 92 (250)
T ss_dssp CCSCHHHHHHHHHHHHHT-----CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCS-HHHHHHHTT
T ss_pred HhCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCccc-HHHHHHhcc
Confidence 389999999999999753 23458999999999999999999874321111100 000000 001111110
Q ss_pred hhCC----CCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHH-Hh
Q 045012 240 IAND----HSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-AT 310 (576)
Q Consensus 240 l~~~----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~~ 310 (576)
.... ..........+...+... ..+++.+||+||++..+...+..+...+.....+..+|+||+..... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000111122222222221 23568999999998866667777766665545677888888764321 11
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
......+.+.+++.++..+++...+...+. .. ..+....|++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122357899999999999999887654321 11 13567889999999999988876543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.25 E-value=8.6e-11 Score=110.81 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=113.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.+||+..++.+.+++... ..+.+.|+|++|+|||+||+.+++... ...+. ..+.+..+...+...+ ...+.
T Consensus 19 ~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (226)
T 2chg_A 19 VVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV-RHKIK 90 (226)
T ss_dssp CCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHH-HHHHH
T ss_pred HcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHH-HHHHH
Confidence 389999999999999643 233489999999999999999987321 11122 2223333332222211 11111
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH-HHh-hhcccc
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AAT-MRAVSG 316 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~~~ 316 (576)
.+..... ...+++.+||+||++.........+...+.....+..+|+||+.... ... ......
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 1111000 11357899999999886655555565555444557788888876532 111 122347
Q ss_pred eecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 317 KTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 317 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
+.+.+++.++..+++...+...+. .. ..+....|++.++|+|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999999999877643221 11 135677889999999996555443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.09 E-value=1.1e-10 Score=117.35 Aligned_cols=266 Identities=16% Similarity=0.106 Sum_probs=138.9
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+|++..++.+..++..... .......+.|+|++|+|||+||+.+++. .... ..+++.+....
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~----------- 76 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEK----------- 76 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCS-----------
T ss_pred hhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCC-----------
Confidence 38999888888887753210 0123467889999999999999999873 2211 22333222111
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC------------------CCCceEEEE
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG------------------ASGSKIVVT 301 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilvT 301 (576)
...+...+...+ .++.+|+||+++.........+...+... .++..+|.|
T Consensus 77 -----------~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 77 -----------PGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp -----------HHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred -----------hHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 122222222111 34568999999876543333333222111 123556666
Q ss_pred ecchH-HHHhh-hc-ccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhccC---
Q 045012 302 HRNQD-VAATM-RA-VSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLSVK--- 375 (576)
Q Consensus 302 tR~~~-v~~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~~~--- 375 (576)
|.... +...+ .. ...+.+.+++.++...++...+...+. .. ..+....|++.++|+|-.+..+...+...
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 66432 11111 11 247889999999999998877654322 11 13667889999999999887766554321
Q ss_pred -----CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhc-cCCCC-C---------cccHHHHHH--
Q 045012 376 -----DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCS-LFPKD-Y---------EFQEEEIIL-- 437 (576)
Q Consensus 376 -----~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls-~fp~~-~---------~i~~~~Li~-- 437 (576)
-+.+....++.. +...+..|+...+..+..+. .|..+ + .+++..+.+
T Consensus 221 ~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 221 AGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp TSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 112222222221 12223445555555554433 23222 0 122222211
Q ss_pred --HHHHcCCCccCCCCCCHHHHHHHHHH-HHHHCCCcee
Q 045012 438 --LWAAEGFLHQENSGRKMEDLGRKFVR-ELHSRSLFQQ 473 (576)
Q Consensus 438 --~w~aeg~i~~~~~~~~~e~~~~~~l~-~L~~rsll~~ 473 (576)
+-+..|++.....+....+.|.+||+ ++.+|+|||+
T Consensus 286 ~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 23445666554445555666677776 6777776664
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=6e-10 Score=111.67 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=112.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.+|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..++++.+..... ..+++++.
T Consensus 23 ~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 23 IVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp CCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHHHH
Confidence 389999999999998643 223389999999999999999987421 11111 1233332222121 11222222
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhh-cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH-HHh-hhccc
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQL-SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AAT-MRAVS 315 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~~ 315 (576)
.+.... ..+ .+++.+||+||++......+..+...+.....++.+|+||....- ... .....
T Consensus 95 ~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 95 HFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 211000 011 356899999999886655666666555444457788888865421 111 12335
Q ss_pred ceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHH-HHHHHH
Q 045012 316 GKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLA-AKTLGG 370 (576)
Q Consensus 316 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa-i~~~~~ 370 (576)
.+.+.+++.++..+++...+...+. .. ..+....|++.|+|.|.. +..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7899999999999999876543221 11 135678899999999954 444443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=6.9e-09 Score=104.05 Aligned_cols=186 Identities=15% Similarity=0.079 Sum_probs=113.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.+|++..++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+..... ..+...+.
T Consensus 27 ~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREKVK 98 (327)
T ss_dssp CCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHHHH
T ss_pred hhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHHHH
Confidence 389999999999988653 234489999999999999999987421 11111 1222322211000 00011111
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH-HHh-hhcccc
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AAT-MRAVSG 316 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~~~ 316 (576)
.+.... ....+++.+||+|+++......+..+...+.....++++|+||....- ... ......
T Consensus 99 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 99 EFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 100000 011256889999999887656666666555544557788888876431 111 112347
Q ss_pred eecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhh
Q 045012 317 KTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLL 372 (576)
Q Consensus 317 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L 372 (576)
+.+.+++.++...++...+...+. .-..+....|++.++|.|..+..+...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 889999999999999877654322 1123667889999999998765554433
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.83 E-value=3.8e-08 Score=100.62 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=115.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+|++..++.+...+... ...+.+.|+|++|+||||+|+.+.+.......+. ..+...-.....+...
T Consensus 18 ~vg~~~~~~~L~~~l~~~-----~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLG-----RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp SCSCHHHHHHHHHHHHHT-----CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTS
T ss_pred ccCcHHHHHHHHHHHHhC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhcc
Confidence 489999999999998653 2345789999999999999999987422111100 0001111111111110
Q ss_pred h-------hCCCCCCCCCHHHHHHHHHHh-hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHh
Q 045012 240 I-------ANDHSKNDDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAAT 310 (576)
Q Consensus 240 l-------~~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~ 310 (576)
. .............+.+.+... ..+++.+||+||++..+......+...+.....+..+|++|.... +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 0 000001223333333332211 235678999999988766666666655544445667777776432 1111
Q ss_pred -hhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 311 -MRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 311 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
......+.+.+++.++..+++...+...+. .. ..+....|++.++|.|..+..+..
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 123467899999999999999876532221 11 135677899999999998876553
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.3e-08 Score=96.85 Aligned_cols=172 Identities=12% Similarity=0.040 Sum_probs=104.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc---ccc--ceEEEEeCCCCChhHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR---HFE--IKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~--~~~wv~~~~~~~~~~~~~~ 235 (576)
.||++|.++|...|...- ..+..+.+.|+|++|+|||++++.|++...... ..+ ..+.++.....+...++..
T Consensus 23 ~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 699999999998886542 135678899999999999999999998532111 111 2456666667788899999
Q ss_pred HHHhhhCCCCCCCCCHHHHHHHHHHh--hcCCeEEEEEeCCCCCChhhhhhhccCCC---CCCCCceEEEEecchH----
Q 045012 236 ILKSIANDHSKNDDDLNLLQEKLKKQ--LSGKKFLLVLDDVWNENYNSWCTLSCPFG---AGASGSKIVVTHRNQD---- 306 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~---- 306 (576)
|++++.+...........+...+... -.+++++++||+++... .-+.+...+. .......||.++...+
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 99999665322223344444444432 24678999999997643 1111221111 1111222333343321
Q ss_pred -HHHhh-hc--ccceecCCCChHHHHHHHHHhhh
Q 045012 307 -VAATM-RA--VSGKTLKELSDDDCLRVLIQHSL 336 (576)
Q Consensus 307 -v~~~~-~~--~~~~~l~~L~~~ea~~L~~~~~~ 336 (576)
+.... .. ...+.+.+.+.++-.+++..++-
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 11 24688999999999999987764
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.79 E-value=6e-08 Score=96.74 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=111.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 20 ~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~----------- 81 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG----------- 81 (319)
T ss_dssp CSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC-----------
T ss_pred hCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC-----------
Confidence 79999999888887532 233489999999999999999987321 11111 122233322111
Q ss_pred hhCCCCCCCCCHHHHHHHHHHh--h-cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHh-hhcc
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQ--L-SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAAT-MRAV 314 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 314 (576)
..........+... + .+++.++|+|+++.........+...+.....++.+|+||.... +... ....
T Consensus 82 --------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 --------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 11111111111111 1 25688999999987765666667666655556777888776543 1111 1233
Q ss_pred cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 315 SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 315 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
..+.+.+++.++...++...+...+. .. ..+....|++.++|.|..+.....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCC-CB---CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999877654332 11 235677889999999986654443
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.62 E-value=1.2e-06 Score=88.12 Aligned_cols=254 Identities=15% Similarity=0.074 Sum_probs=139.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
.+|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. ....| +.++.+..
T Consensus 31 iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~------------- 91 (338)
T 3pfi_A 31 YIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMI------------- 91 (338)
T ss_dssp CCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGC-------------
T ss_pred hCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhc-------------
Confidence 38999999998888865311 1234556899999999999999999863 22221 22222111
Q ss_pred hhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC------------------CCCceEEEE
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG------------------ASGSKIVVT 301 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~ilvT 301 (576)
.........+.. ..+..+|+||+++.........+...+... .++..+|.|
T Consensus 92 ---------~~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 92 ---------EKSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp ---------CSHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred ---------cchhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 111222222222 235678999999876544433333322211 113456666
Q ss_pred ecchHH-HHhh-hc-ccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHHhhc-----
Q 045012 302 HRNQDV-AATM-RA-VSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGGLLS----- 373 (576)
Q Consensus 302 tR~~~v-~~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~~L~----- 373 (576)
|..... ...+ .. ...+.+.+++.++...++...+...+. ....+....|++.+.|.|-.+..+...+.
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 236 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADV 236 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 654321 1111 11 257899999999999998877643221 11246677888999999966554443321
Q ss_pred -cC--CChhhHHHHHhhccccCCCCcccchhhhhhhhcCCcHHHHHHHHHhccCCCCCcccHHHHHHHHHHcCCCccCCC
Q 045012 374 -VK--DDLNDWEFVLNTNLWDLQEDKCDIVPALRVSYHFLPPQLKRCFAYCSLFPKDYEFQEEEIILLWAAEGFLHQENS 450 (576)
Q Consensus 374 -~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~~~~ls~fp~~~~i~~~~Li~~w~aeg~i~~~~~ 450 (576)
.. -+.+.....+ ..+..+...++...+..+..++-. .+..+....+... -|.
T Consensus 237 ~~~~~i~~~~~~~~~---------------~~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~------ 291 (338)
T 3pfi_A 237 NDEEIITEKRANEAL---------------NSLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSE------ 291 (338)
T ss_dssp TTCSEECHHHHHHHH---------------HHHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTC------
T ss_pred hcCCccCHHHHHHHH---------------HHhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCC------
Confidence 01 1111121111 112233344555545566555555 4445555554432 121
Q ss_pred CCCHHHHHHHHHH-HHHHCCCceeeC
Q 045012 451 GRKMEDLGRKFVR-ELHSRSLFQQSS 475 (576)
Q Consensus 451 ~~~~e~~~~~~l~-~L~~rsll~~~~ 475 (576)
......++++ .|++.+++....
T Consensus 292 ---~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 292 ---DENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp ---CHHHHHHTTHHHHHHTTSEEEET
T ss_pred ---CHHHHHHHHhHHHHHcCceecCC
Confidence 1344565666 889999998765
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=3.4e-07 Score=92.67 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=111.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.+|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+.......+. ....++.+..... ..+.+.+.
T Consensus 39 i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 111 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVK 111 (353)
T ss_dssp CCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHH
T ss_pred hhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHH
Confidence 389999999999998543 223389999999999999999987422111121 1222333322222 22222222
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHh-hhcccc
Q 045012 239 SIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAAT-MRAVSG 316 (576)
Q Consensus 239 ~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~ 316 (576)
.+........... .....-.+++-+|++|+++.........+...+.......++|++|.... +... ......
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 2211110000000 00111124567999999987655555555555544444567777765432 2111 122357
Q ss_pred eecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 317 KTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 317 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
+.+.+++.++....+...+...+. ..+ .+....|++.++|.|-.+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999999998877643322 111 3667889999999998755443
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=8.3e-08 Score=87.75 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+||+++++++.+.+.. ...+.+.|+|++|+|||+||+.+++.
T Consensus 24 ~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999854 33467889999999999999999874
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.53 E-value=1.2e-07 Score=90.40 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=90.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+.+.|+|++|+|||+||+.+++. .........|++.+...+. +. ..+ ..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----------~~--------------~~~-~~~- 102 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----------ST--------------ALL-EGL- 102 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----------CG--------------GGG-TTG-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----------HH--------------HHH-Hhc-
Confidence 4578899999999999999999874 2222334556655331110 00 000 011
Q ss_pred CCeEEEEEeCCCCCChhh--hhhhccCCCCC-CCC-ceEEEEecchH---------HHHhhhcccceecCCCChHHHHHH
Q 045012 264 GKKFLLVLDDVWNENYNS--WCTLSCPFGAG-ASG-SKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRV 330 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 330 (576)
.++.+||+||++...... ...+...+... ..+ ..+|+||+... +...+.....+.+.+++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 346799999997643222 22232222110 112 24777776421 111122226789999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 331 LIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
+...+...+. .. ..+....|++.++|.+-.+..+..
T Consensus 183 l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 183 LQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHHHH
Confidence 9887643221 11 236677899999999877765543
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.51 E-value=1.1e-06 Score=91.76 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhcccc--ceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE--IKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
...+.|+|++|+||||||+.+++. ....++ ..++++. ..+..++...+... ... .+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~------~~~----~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLN----EFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT------CHH----HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc------cHH----HHHHHh
Confidence 678899999999999999999983 333332 2334432 33444555544422 111 233333
Q ss_pred cCCeEEEEEeCCCCCCh--hhhhhhccCCCC-CCCCceEEEEecch---------HHHHhhhcccceecCCCChHHHHHH
Q 045012 263 SGKKFLLVLDDVWNENY--NSWCTLSCPFGA-GASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRV 330 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 330 (576)
..++.+|+|||++.... .....+...+.. ...|..||+||... .+...+.....+.+.+++.++-.++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 33677999999976432 122233332211 13467788888763 2222233336789999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 331 LIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
+.+.+...+. ..++ +....|++.++|.+--+.-+.
T Consensus 272 L~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHHH
Confidence 9887643221 1112 446778889999887655443
No 26
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=3e-06 Score=85.13 Aligned_cols=183 Identities=16% Similarity=0.108 Sum_probs=102.5
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh-----
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI----- 240 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l----- 240 (576)
..+.+...+..+ .-.+.+.++|++|+|||++|+.+.+...-...-. ..+...-...+.+...-
T Consensus 10 ~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-------~~~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 10 DFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-------HKSCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-------TBCCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-------CCCCCCCHHHHHHhcCCCCCEE
Confidence 345555555432 3456899999999999999999876321110000 00000001111111100
Q ss_pred --hCCCCCCCCCHHHHHHHHHHh----hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHhh-h
Q 045012 241 --ANDHSKNDDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-R 312 (576)
Q Consensus 241 --~~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~ 312 (576)
...........+++.+.+... ..+++-++|+|+++..+....+.+...+.....++.+|++|.+.. +...+ .
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 000000112233333222221 135678999999988766666666666655445677777766542 22222 2
Q ss_pred cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 313 AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 313 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
....+.+.+++.++..+.+.... . .. .+.+..+++.++|.|..+..+.
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~---~---~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV---T---MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC---C---CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc---C---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 34678999999999999888764 1 11 2556779999999998765543
No 27
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.37 E-value=4.1e-06 Score=85.31 Aligned_cols=198 Identities=13% Similarity=0.098 Sum_probs=105.3
Q ss_pred ccccchhHHHH---HHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEe----CCCCChhHH
Q 045012 160 SDGKEKDKEEI---VELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV----SEDFDVSRV 232 (576)
Q Consensus 160 ~vGR~~e~~~l---~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~~~ 232 (576)
.+|++..++.+ ...+... ....+.+.|+|++|+|||+||+.+.+.. ....+ .+.+.. +......+.
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~----~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTT----CCTTCEEEEEESTTSSHHHHHHHHHHHH--CSSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred ccChHHHHHHHHHHHHHHHcC----CCCCCEEEEECCCCCCHHHHHHHHHHHh--cccCC-cccccchhhhhcccchhHH
Confidence 38988886664 4444432 1234689999999999999999998742 22111 111221 122233344
Q ss_pred HHHHHHhhhCC---------------------C-------C-CCCCCHHHHHHHHHHhh-----cCC----eEEEEEeCC
Q 045012 233 TQSILKSIAND---------------------H-------S-KNDDDLNLLQEKLKKQL-----SGK----KFLLVLDDV 274 (576)
Q Consensus 233 ~~~il~~l~~~---------------------~-------~-~~~~~~~~l~~~l~~~l-----~~k----r~LlVlDdv 274 (576)
+.+.+...... . . ........+...+.... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 44333321100 0 0 00000122222222211 233 469999999
Q ss_pred CCCChhhhhhhccCCCCCCCCceEEEEecc-------------hHH-HHhhhcccceecCCCChHHHHHHHHHhhhCCCC
Q 045012 275 WNENYNSWCTLSCPFGAGASGSKIVVTHRN-------------QDV-AATMRAVSGKTLKELSDDDCLRVLIQHSLGAGV 340 (576)
Q Consensus 275 ~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------------~~v-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 340 (576)
+.........+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+...+.
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 887666666665555443333 34444431 111 111122345799999999999999877654222
Q ss_pred CCCCchHHHHHHHHHHhcC-CChHHHHHHH
Q 045012 341 FNIRQSLKEVAEKIAKKCK-GLPLAAKTLG 369 (576)
Q Consensus 341 ~~~~~~~~~~~~~I~~~c~-G~PLai~~~~ 369 (576)
. -..+....|++.+. |.|-.+..+.
T Consensus 278 -~---~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 -E---MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp -C---BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 12356778888887 7776655444
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=4e-06 Score=87.29 Aligned_cols=178 Identities=19% Similarity=0.127 Sum_probs=100.0
Q ss_pred cccchhH---HHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDK---EEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..+ ..|...+... ..+.+.|+|++|+||||||+.+.+. .... ++.++.......-++.++
T Consensus 29 vGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~ 95 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAI 95 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHH
Confidence 7887777 6677777543 3478999999999999999999873 2222 222221111111111111
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEE-EecchH--H-HHhhhc
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVV-THRNQD--V-AATMRA 313 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v-~~~~~~ 313 (576)
.. .......+++.+|+||+++.......+.+...+..+ ...+|. ||.+.. + ......
T Consensus 96 ~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 96 ER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCc
Confidence 11 011112467889999999876544445555444432 233333 555442 1 111223
Q ss_pred ccceecCCCChHHHHHHHHHhhhCCCCC---CCCchHHHHHHHHHHhcCCChHHHHHHHH
Q 045012 314 VSGKTLKELSDDDCLRVLIQHSLGAGVF---NIRQSLKEVAEKIAKKCKGLPLAAKTLGG 370 (576)
Q Consensus 314 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~---~~~~~~~~~~~~I~~~c~G~PLai~~~~~ 370 (576)
...+.+.+++.++...++.+.+...... ....-..+....|++.++|.+-.+..+..
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4578899999999999988776431110 01112246678888899998876655443
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=3.5e-06 Score=89.86 Aligned_cols=195 Identities=14% Similarity=0.157 Sum_probs=104.0
Q ss_pred cccchhHHHHHHHHhcCC-----------CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCCh
Q 045012 161 DGKEKDKEEIVELLLRDD-----------LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDV 229 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 229 (576)
+|++..+++|.+++.... ..+.+..+.+.|+|++|+|||++|+.+++.. .+. .+.++.+....
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~~-~i~in~s~~~~- 115 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GYD-ILEQNASDVRS- 115 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TCE-EEEECTTSCCC-
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEeCCCcch-
Confidence 788888888888886411 0001245789999999999999999998742 121 22333333222
Q ss_pred hHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChh---hhhhhccCCCCCCCCceEEEEecchH
Q 045012 230 SRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN---SWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 230 ~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
..++...+........ ...-...... .....+++.+|++|+++..... .+..+...+.. .+..||+++....
T Consensus 116 ~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp HHHHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred HHHHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 2333333332211110 0000000000 0012357889999999764321 12233322222 2334555554321
Q ss_pred ---HHHhhhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC-hHHHHHHHH
Q 045012 307 ---VAATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL-PLAAKTLGG 370 (576)
Q Consensus 307 ---v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 370 (576)
+.........+.+.+++.++..+++...+...+.. ..+ +....|++.++|. +-++..+..
T Consensus 191 ~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 191 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 22212233568899999999999887766432221 112 4467788999994 455555543
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1.8e-06 Score=87.47 Aligned_cols=105 Identities=9% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHhh-hcccceecCCCChHHHHHHHHHhhhCCCCC
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGAGVF 341 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 341 (576)
+++-++|||++...+......+...+.....++.+|++|.... +...+ .....+.+.+++.++..+.+...+...+.
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 4677999999988766555556555543334677777776532 22212 23367899999999999999877643221
Q ss_pred CCCchHHHHHHHHHHhcCCChHHHHHHHHh
Q 045012 342 NIRQSLKEVAEKIAKKCKGLPLAAKTLGGL 371 (576)
Q Consensus 342 ~~~~~~~~~~~~I~~~c~G~PLai~~~~~~ 371 (576)
..+ ..+....|++.++|.+-.+..+...
T Consensus 212 ~~~--~~~~l~~i~~~~~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 212 QLE--TKDILKRIAQASNGNLRVSLLMLES 239 (354)
T ss_dssp EEC--CSHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred CCC--cHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 0256678899999998776655543
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.31 E-value=2.8e-06 Score=84.88 Aligned_cols=178 Identities=19% Similarity=0.129 Sum_probs=101.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+..++.+.+++... ....++.+.|++|+|||++|+.+++.. . ...+.++.+. .. ...++.++...
T Consensus 29 vg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~-~~-~~~i~~~~~~~ 96 (324)
T 3u61_B 29 ILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSD-CK-IDFVRGPLTNF 96 (324)
T ss_dssp CCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTT-CC-HHHHHTHHHHH
T ss_pred hCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEcccc-cC-HHHHHHHHHHH
Confidence 79999999999998743 345788889999999999999998732 1 1223343322 11 12222222211
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-hhhhhhhccCCCCCCCCceEEEEecchHH-HHh-hhcccce
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-YNSWCTLSCPFGAGASGSKIVVTHRNQDV-AAT-MRAVSGK 317 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~~~~ 317 (576)
.... ...+++.+|++|+++... ......+...+.....+..+|+||....- ... ......+
T Consensus 97 ~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 97 ASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred Hhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 1100 012478899999998765 44444454444332345678887765431 111 1123578
Q ss_pred ecCCCChHHHHHH-------HHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 318 TLKELSDDDCLRV-------LIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 318 ~l~~L~~~ea~~L-------~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.+.+++.++-.++ +...+...+. ..++ .+....|++.++|.+-.+....
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHHH
Confidence 8999998874333 2222221111 1111 2567778888988776544333
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=4.6e-06 Score=81.65 Aligned_cols=182 Identities=18% Similarity=0.161 Sum_probs=96.3
Q ss_pred cccchhHHHHHHHHhcCCCC-------CCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDLR-------PDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
+|.+..+++|.+.+...... +-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~------- 87 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSEL------- 87 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGG-------
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHH-------
Confidence 67777777776665321000 0134567899999999999999999873 2211 112222111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC-----------Ch---hhhhhhccCCC--CCCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-----------NY---NSWCTLSCPFG--AGASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~---~~~~~l~~~l~--~~~~gs~ 297 (576)
.... .......+...+.......+.+|+||+++.. +. .....+...+. ....+..
T Consensus 88 -------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 88 -------VKKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp -------CCCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred -------HHhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 0000 1111122223333334456789999999542 11 11111222211 1223566
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHH
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTL 368 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~ 368 (576)
||.||....... .. .....+.+.+.+.++..+++......... ..... ...|++.+.| .|-.|..+
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 777887542211 11 12246889999999999999877644322 11112 3556777777 45455444
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=5.1e-06 Score=82.36 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHhcC---------CCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhH
Q 045012 161 DGKEKDKEEIVELLLRD---------DLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSR 231 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~---------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 231 (576)
+|.+..++.|.+++... ..........+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 34 ~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----- 108 (309)
T 3syl_A 34 IGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD----- 108 (309)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-----
T ss_pred cChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-----
Confidence 78888888877665321 0001234567899999999999999988874322222212223333210
Q ss_pred HHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC---------ChhhhhhhccCCCCCCCCceEEEEe
Q 045012 232 VTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE---------NYNSWCTLSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 232 ~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTt 302 (576)
.+.... ...........+... +..+|+||+++.. .......+...+.....+..+|+||
T Consensus 109 -------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 -------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp -------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred -------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111110 111112222223222 3459999999743 3334445555554444567778887
Q ss_pred cchHHHHh-------hh-cccceecCCCChHHHHHHHHHhhhC
Q 045012 303 RNQDVAAT-------MR-AVSGKTLKELSDDDCLRVLIQHSLG 337 (576)
Q Consensus 303 R~~~v~~~-------~~-~~~~~~l~~L~~~ea~~L~~~~~~~ 337 (576)
........ .. ....+.+.+++.++-.+++...+..
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 65432111 11 2267899999999999998777643
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.29 E-value=1.5e-05 Score=76.79 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=85.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.+. . .......+...+.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV--------------I--GGLGAARVRSLFKEARA 96 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--------------S--TTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--------------c--cChhHHHHHHHHHHHHh
Confidence 4566889999999999999999873 2221 223333221110 0 01112222333333444
Q ss_pred CCeEEEEEeCCCCCC------------h---hhhhhhccCCCC--CCCCceEEEEecchHHH-Hhhh----cccceecCC
Q 045012 264 GKKFLLVLDDVWNEN------------Y---NSWCTLSCPFGA--GASGSKIVVTHRNQDVA-ATMR----AVSGKTLKE 321 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~-~~~~----~~~~~~l~~ 321 (576)
..+.+|+||+++... . .....+...+.. ...+..||.||...... .... -...+.+..
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 568999999997531 0 111122222211 12345666677654321 1111 124677889
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHH
Q 045012 322 LSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLG 369 (576)
Q Consensus 322 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 369 (576)
.+.++-.+++...+..... ..........+++.+.|.+- .|..+.
T Consensus 177 p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999988877643321 12222334778888888754 454443
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.22 E-value=1.2e-05 Score=80.28 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=88.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
....+.|+|++|+||||||+.+++... ..-...++++. ..+...+...+... ....... .+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~~~----~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSA------DDFAQAMVEHLKKG------TINEFRN----MYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEH------HHHHHHHHHHHHHT------CHHHHHH----HHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEH------HHHHHHHHHHHHcC------cHHHHHH----Hhc
Confidence 456789999999999999999997421 11112344432 33444444443321 1122222 222
Q ss_pred CCeEEEEEeCCCCCCh--hhhhhhccCCCC-CCCCceEEEEecchH---------HHHhhhcccceecCCCChHHHHHHH
Q 045012 264 GKKFLLVLDDVWNENY--NSWCTLSCPFGA-GASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRVL 331 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L~ 331 (576)
++.+|+|||++.... .....+...+.. ...+..||+||.... +...+.....+.+.+ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 367999999976432 122223322211 123557888776431 222222235688999 999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHH
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAA 365 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai 365 (576)
...+...+. ..+ .+....|++.+ |.+-.+
T Consensus 176 ~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 176 KEKLKEFNL-ELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTTC-CCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHhcCC-CCC---HHHHHHHHHhC-CCHHHH
Confidence 887653222 122 35677788888 776543
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=1.6e-05 Score=77.31 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=87.3
Q ss_pred cccchhHHHHHH-------HHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVE-------LLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
+|.....+++.. .+... .....+.+.|+|++|+|||+||+.+++. .. ++. +.++.+.
T Consensus 36 i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~-------- 99 (272)
T 1d2n_A 36 IKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPD-------- 99 (272)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGG--------
T ss_pred CCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHH--------
Confidence 566665555554 23221 1245678999999999999999999873 21 121 1222211
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC---------Chhhh-hhhccCCC---CCCCCceEEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE---------NYNSW-CTLSCPFG---AGASGSKIVV 300 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~-~~l~~~l~---~~~~gs~ilv 300 (576)
.+.... .......+...+......++.+|+||+++.. ....+ ..+...+. .......||.
T Consensus 100 -----~~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 100 -----KMIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -----GCTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -----HhcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 010000 0011122233333344467899999998542 01111 22222222 1223445666
Q ss_pred EecchHHHHh---hhc-ccceecCCCCh-HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC
Q 045012 301 THRNQDVAAT---MRA-VSGKTLKELSD-DDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG 360 (576)
Q Consensus 301 TtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 360 (576)
||........ ... ...+.+.+++. ++...++.... ... .+....|++.+.|
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTT
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcC
Confidence 7776644332 111 35678888888 66666655431 111 3556778888877
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=1.2e-05 Score=80.83 Aligned_cols=174 Identities=11% Similarity=0.120 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhcccc-ceEEEEeCCCCChhHHHHHHHHh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFE-IKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
+|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++.... ...+. ...-++.+...
T Consensus 28 ~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~------------ 88 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDR------------ 88 (340)
T ss_dssp CSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCC------------
T ss_pred cCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccc------------
Confidence 68888888888777543 223389999999999999999987321 11111 11111111111
Q ss_pred hhCCCCCCCCCHHHHHHHHHHh------hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchH-HHHh-h
Q 045012 240 IANDHSKNDDDLNLLQEKLKKQ------LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAAT-M 311 (576)
Q Consensus 240 l~~~~~~~~~~~~~l~~~l~~~------l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~ 311 (576)
..+.+.+.+... +.+.+-++|+|+++.........+...+......+.+|++|.... +... .
T Consensus 89 ----------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 89 ----------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp ----------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ----------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHH
Confidence 122222222211 123467899999977655555555544433334566777665432 1111 1
Q ss_pred hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHH
Q 045012 312 RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKT 367 (576)
Q Consensus 312 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~ 367 (576)
.....+.+.+++.++..+.+...+-..+. .. ..+..+.|++.++|.+--+..
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i---~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKL-KL---SPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTC-CB---CHHHHHHHHHHHTTCHHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 12346789999999988888776532221 11 135677888999998875433
No 38
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=7.3e-05 Score=74.48 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=98.2
Q ss_pred cccchhHHHHHHHHhcC------CCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRD------DLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
+|.+..++.|.+.+... -.......+-+.|+|++|+|||+||+.+++. ....| +.++. .+
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~~--- 86 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------SD--- 86 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------HH---
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------HH---
Confidence 56676666666655210 0001234567899999999999999999873 22221 12221 11
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhccCC---CCCCCCceEEE
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLSCPF---GAGASGSKIVV 300 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs~ilv 300 (576)
+..... ......+...+...-..++.+|+||+++.... .....+...+ .....+..||.
T Consensus 87 -l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 159 (322)
T 3eie_A 87 -LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159 (322)
T ss_dssp -HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEE
T ss_pred -Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 111110 11112222233333345778999999965321 0112222222 12234556666
Q ss_pred EecchHHH-Hhh--hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHHH
Q 045012 301 THRNQDVA-ATM--RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLGG 370 (576)
Q Consensus 301 TtR~~~v~-~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 370 (576)
||...... ..+ .-...+.+...+.++-.++|...+..... ... ......|++.+.| .+-.|..+..
T Consensus 160 atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 160 ATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 77653221 111 12346778888999999999887644321 111 2456778889987 4555555543
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.12 E-value=0.00013 Score=72.65 Aligned_cols=163 Identities=11% Similarity=0.082 Sum_probs=87.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+.+.|+|++|+|||+||+.+++.. ...-++.++... +.... .......+...+...-.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~------~~~~~~~i~~~~------------l~~~~--~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD------------LVSKW--LGESEKLVKNLFQLARE 103 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT------TSCEEEEEECCS------------SCCSS--CCSCHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc------CCCcEEEEEhHH------------HHhhh--hhHHHHHHHHHHHHHHh
Confidence 45789999999999999999999732 111223332210 00000 11222223333333334
Q ss_pred CCeEEEEEeCCCCCCh-------h----hhhhhccCC---CCCCCCceEEEEecchHHH-Hhh--hcccceecCCCChHH
Q 045012 264 GKKFLLVLDDVWNENY-------N----SWCTLSCPF---GAGASGSKIVVTHRNQDVA-ATM--RAVSGKTLKELSDDD 326 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~-------~----~~~~l~~~l---~~~~~gs~ilvTtR~~~v~-~~~--~~~~~~~l~~L~~~e 326 (576)
.++.+|+||+++.... . ....+...+ .....+..||.||..+... ..+ .-...+.+...+.++
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHH
Confidence 6789999999965310 0 011121111 1122445566566543211 111 122467788888888
Q ss_pred HHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC-hHHHHHHHH
Q 045012 327 CLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL-PLAAKTLGG 370 (576)
Q Consensus 327 a~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~~ 370 (576)
-.+++......... .. .......|++.+.|. +-.|..+..
T Consensus 184 r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 184 RAAMFKLHLGTTQN-SL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHTTCCB-CC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88888776543221 11 134567889999987 555665554
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=3e-06 Score=76.90 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++.
T Consensus 24 ~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 24 VIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999854 23466789999999999999999874
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.10 E-value=6.7e-05 Score=75.82 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=99.3
Q ss_pred ccccchhHHHHHHHHhcC----C--CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRD----D--LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.+|.+..++.|.+.+... . .......+-+.|+|++|+|||+||+.+++. ....| +.++. .
T Consensus 53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~------~--- 118 (355)
T 2qp9_X 53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S--- 118 (355)
T ss_dssp SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEH------H---
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeH------H---
Confidence 378999888888876321 0 001233456889999999999999999983 22211 12221 1
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChh-----------hhhhhccCCC---CCCCCceEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN-----------SWCTLSCPFG---AGASGSKIV 299 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~il 299 (576)
++..... ......+...+...-..++.+|+||+++..... ....+...+. ....+..||
T Consensus 119 -~l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 119 -DLVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp -HHHSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred -HHhhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 1111111 111222223333333467899999999753211 0112222221 122355566
Q ss_pred EEecchHH-HHhh--hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHHH
Q 045012 300 VTHRNQDV-AATM--RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLGG 370 (576)
Q Consensus 300 vTtR~~~v-~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 370 (576)
.||..+.. ...+ .-...+.+...+.++-.+++......... ... ......|++.+.| .+-.|..+..
T Consensus 192 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 67765421 1111 12256778888888888888877643321 111 3456778889988 4555555543
No 42
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=1.8e-05 Score=78.09 Aligned_cols=148 Identities=6% Similarity=-0.069 Sum_probs=91.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccc-hhccccceEEEEeCC-CCChhHHHHHHHHhh
Q 045012 163 KEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDR-VQRHFEIKAWTCVSE-DFDVSRVTQSILKSI 240 (576)
Q Consensus 163 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l 240 (576)
-++-++.|...+..+ ..+...++|++|+||||+|..+.+... ....++...++..++ ...+ +..+++.+.+
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~i-d~ir~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI-DDIRTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCH-HHHHHHHHHH
Confidence 345566666766532 267899999999999999999986311 111122334443322 1121 2223333333
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch-HHHHhhhcccceec
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMRAVSGKTL 319 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~l 319 (576)
...+ ..+++-++|+|+++..+....+.++..+....+.+.+|++|.++ .+...+..- .+++
T Consensus 75 ~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 75 NYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp TSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred hhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 2211 12456789999998877677777777765555567777766543 344444444 8999
Q ss_pred CCCChHHHHHHHHHhh
Q 045012 320 KELSDDDCLRVLIQHS 335 (576)
Q Consensus 320 ~~L~~~ea~~L~~~~~ 335 (576)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887765
No 43
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.06 E-value=4.4e-06 Score=72.87 Aligned_cols=113 Identities=13% Similarity=-0.016 Sum_probs=67.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|+...+.++.+.+.... ....-|.|+|++|+|||++|+.+++... ....+.+ ++.+...+.
T Consensus 4 iG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v--~~~~~~~~~----------- 65 (145)
T 3n70_A 4 IGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV--YRELTPDNA----------- 65 (145)
T ss_dssp CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE--EEECCTTTS-----------
T ss_pred eeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE--EECCCCCcc-----------
Confidence 788889999888875432 1224578999999999999999987421 1122222 444432211
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
.... ..+... ...+|+||+++.........+...+.......++|.||..+
T Consensus 66 --------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 1111 111111 23578999998876555555555554444456788877653
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.03 E-value=4.7e-05 Score=77.06 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=100.1
Q ss_pred ccccchhHHHHHHHHhcC----CC--CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRD----DL--RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.+|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~----- 155 (357)
T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS----- 155 (357)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-----
T ss_pred hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc-----
Confidence 389999999988877431 00 00134578999999999999999999873 2211 22333321111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------hhhhhhhccCCCC----CCCCceE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWCTLSCPFGA----GASGSKI 298 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~gs~i 298 (576)
.. .......+...+...-..++.+|+||+++... ......+...+.. ...+..|
T Consensus 156 ---------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 156 ---------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp ---------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE
T ss_pred ---------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 00 00111112222222234567899999994320 0111222222211 1234455
Q ss_pred EEEecchH-HHHhh--hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHHH
Q 045012 299 VVTHRNQD-VAATM--RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLGG 370 (576)
Q Consensus 299 lvTtR~~~-v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 370 (576)
|.||.... +...+ .....+.+...+.++..+++...+..... .. ..+....|++.+.| .+-.|..+..
T Consensus 225 I~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 225 VGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Cc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 65665432 11111 12246678888888888888776643221 11 13567788899988 5666666654
No 45
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.00 E-value=7.4e-06 Score=74.22 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=56.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
...+.|+|++|+|||||++.+++.......+. .+++ +..++...+......... . .....+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~---~---~~~~~~~----- 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD---T---KFLKTVL----- 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC---S---HHHHHHH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH---H---HHHHHhc-----
Confidence 46899999999999999999987432122222 2333 344555555444432221 1 2222222
Q ss_pred CeEEEEEeCCCCCChhhhh--hhccCCCCC-CCCceEEEEecch
Q 045012 265 KKFLLVLDDVWNENYNSWC--TLSCPFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 265 kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~~ 305 (576)
++-+|||||++......|. .+...+... ..|..+|+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4568999999743222332 222222111 2467788888743
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=0.00016 Score=71.07 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=94.0
Q ss_pred cccchhHHHHHHHHhcCC------CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHH
Q 045012 161 DGKEKDKEEIVELLLRDD------LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 234 (576)
+|.+..++.+.+.+.... ..-....+.+.|+|++|+|||+||+.+++.. ... .+.++.+.-..
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~------ 92 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTS------ 92 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSS------
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhh------
Confidence 677777777777653210 0001235688999999999999999998732 211 12233222110
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhc---cCCCCC--CCCceE
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLS---CPFGAG--ASGSKI 298 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~---~~l~~~--~~gs~i 298 (576)
.. ...........+......++.+|+||+++.... .....+. ..++.. ..+..|
T Consensus 93 --------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 93 --------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp --------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred --------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 00 111112222223333345778999999965311 0001111 111111 134556
Q ss_pred EEEecchHH-HHhh--hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHH
Q 045012 299 VVTHRNQDV-AATM--RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLG 369 (576)
Q Consensus 299 lvTtR~~~v-~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~ 369 (576)
|.||..... .... .....+.+...+.++-..++...+..... .. ..+....|++.+.|.+- ++..+.
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667765421 1111 12245667777777777777765533221 11 13456778889998775 554444
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.95 E-value=0.00017 Score=75.09 Aligned_cols=187 Identities=12% Similarity=0.084 Sum_probs=99.8
Q ss_pred ccccchhHHHHHHHHhcC----CC--CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRD----DL--RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.+|.+..++.|.+.+..+ .. ......+.+.|+|++|+|||+||+.+++.. ....++.++.. ++.
T Consensus 136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~----~l~ 205 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSS----DLV 205 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-------
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHH----HHH
Confidence 378898888888776321 00 011345789999999999999999999732 11223333322 111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhccCCCC---CCCCceEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLSCPFGA---GASGSKIV 299 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~il 299 (576)
....+. .......+.. ..-..++.+|+||+++.... .....+...+.. ...+..||
T Consensus 206 ----~~~~g~---~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 206 ----SKWLGE---SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred ----hhhcch---HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 111111 1122332222 22245788999999975310 111223333322 23456666
Q ss_pred EEecchHHH-Hh-h-hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHHHH
Q 045012 300 VTHRNQDVA-AT-M-RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTLGG 370 (576)
Q Consensus 300 vTtR~~~v~-~~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~~~ 370 (576)
.||..+... .. . .....+.+...+.++-..+|......... .. .......|++.+.| .+-.|..+..
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL---TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 677654221 11 1 12245677778888888888776543221 11 12456778889988 4555555543
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=1.2e-05 Score=74.22 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=54.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
..+.|+|++|+|||+||+.+++. ........+|+++ ..+...+...... .........+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~------~~~~~~~~~~~~----- 115 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELFRELKHSLQD------QTMNEKLDYIKK----- 115 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHHHHHHHC---------CCCHHHHHHHHH-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHHHHHHHHhcc------chHHHHHHHhcC-----
Confidence 68899999999999999999984 3333334556544 2444444443321 112333333322
Q ss_pred eEEEEEeCCCCCChhhhhh--hcc-CCCCC-CCCceEEEEecch
Q 045012 266 KFLLVLDDVWNENYNSWCT--LSC-PFGAG-ASGSKIVVTHRNQ 305 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~~ 305 (576)
.-+|||||++......|.. +.. .+... ..+..+|+||...
T Consensus 116 ~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 116 VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 2399999996643333322 221 11111 2355788888743
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.90 E-value=1.7e-05 Score=89.89 Aligned_cols=152 Identities=12% Similarity=0.139 Sum_probs=78.2
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchh---ccc-c-ceEEEEeCCCCChhHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ---RHF-E-IKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~-~~~wv~~~~~~~~~~~~~ 234 (576)
.+||+.++.++.+.|... ....+.|+|++|+|||+||+.+++...-. ... . ..++++.+.-
T Consensus 172 viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l-------- 237 (854)
T 1qvr_A 172 VIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL-------- 237 (854)
T ss_dssp CCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh--------
Confidence 489999999999999643 23457899999999999999998742110 001 1 1222222110
Q ss_pred HHHHhhhCCCCCCCCCHH-HHHHHHHHhhc-CCeEEEEEeCCCCCChh-----hhh---hhccCCCCCCCCceEEEEecc
Q 045012 235 SILKSIANDHSKNDDDLN-LLQEKLKKQLS-GKKFLLVLDDVWNENYN-----SWC---TLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~-~l~~~l~~~l~-~kr~LlVlDdv~~~~~~-----~~~---~l~~~l~~~~~gs~ilvTtR~ 304 (576)
.. +.. ...+.. .+...+...-. +++.+|++|+++..... .++ .+...+. . .+..+|.+|..
T Consensus 238 --~~---g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~-~~i~~I~at~~ 308 (854)
T 1qvr_A 238 --LA---GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-R-GELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-T-TCCCEEEEECH
T ss_pred --hc---cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-C-CCeEEEEecCc
Confidence 00 000 011122 22222222222 46899999999763210 011 1222221 1 23456665554
Q ss_pred hHHHH-----h-hhcccceecCCCChHHHHHHHHHh
Q 045012 305 QDVAA-----T-MRAVSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 305 ~~v~~-----~-~~~~~~~~l~~L~~~ea~~L~~~~ 334 (576)
..... . ......+.+.+++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43211 1 112346889999999999988644
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.89 E-value=3.2e-05 Score=81.20 Aligned_cols=145 Identities=15% Similarity=0.180 Sum_probs=78.5
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccc-----cceEEEEeCCCCChhHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF-----EIKAWTCVSEDFDVSRVTQ 234 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~ 234 (576)
.+||+.+++.+...|... ...-+.|+|++|+|||+||+.+++. +...+ ...-++.+.-.
T Consensus 182 iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-----------
T ss_pred ccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC--------
Confidence 499999999999999643 2345689999999999999999873 21111 11111111110
Q ss_pred HHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHH-----
Q 045012 235 SILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA----- 309 (576)
Q Consensus 235 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~----- 309 (576)
....+. .......+... .-..++.+|++|. . ......+...+.. ...++|.+|.......
T Consensus 246 ---~~~~g~---~e~~~~~~~~~---~~~~~~~iLfiD~--~--~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ---TKYRGE---FEDRLKKVMDE---IRQAGNIILFIDA--A--IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp -------------CTTHHHHHHH---HHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred ---ccccch---HHHHHHHHHHH---HHhcCCeEEEEeC--c--hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcC
Confidence 000000 11222233222 2335678999991 1 1222234444432 2455666665443211
Q ss_pred --hhhcccceecCCCChHHHHHHHHHhh
Q 045012 310 --TMRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 310 --~~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.......+.+.+.+.++..+++....
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11233568999999999999998654
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=0.0007 Score=67.68 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=90.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|.+..++.+...+..... .+..+..+.|+|++|+||||||+.+++. ....|. . .+.+..
T Consensus 28 ~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~-~sg~~~------------ 87 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----V-TSGPVL------------ 87 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----E-EETTTC------------
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----E-EechHh------------
Confidence 5666666665555532100 0134467899999999999999999873 221111 1 111100
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC--------C----------CCceEE-EE
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG--------A----------SGSKIV-VT 301 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~il-vT 301 (576)
.....+...+. .+ .++.++++|+++.......+.+...+... . +...++ .|
T Consensus 88 --------~~~~~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 88 --------VKQGDMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp --------CSHHHHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred --------cCHHHHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 01111111111 12 23457788888654322222222111000 0 112222 34
Q ss_pred ecchHHHHhhh--cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 302 HRNQDVAATMR--AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 302 tR~~~v~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
++...+..... ......+++.+.++-.+++.+.+...+. ....+.+..|++.++|.|-.+.-+.
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 44333222221 1124789999999999999877643221 1124668889999999997654443
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.88 E-value=0.00014 Score=74.55 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=96.8
Q ss_pred ccccchhHHHHHHHHhcCCC------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDL------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.+|.+..++.|.+++..... ......+-+.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~----- 186 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS----- 186 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-------
T ss_pred hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc-----
Confidence 38999999999887732100 00123468899999999999999999873 2111 12222211110
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCC-----------hhhhhhhccCCC---C-CCCCceE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWCTLSCPFG---A-GASGSKI 298 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs~i 298 (576)
.. .......+...+...-...+.+|+||+++... ......+...+. . ......|
T Consensus 187 ---------~~--~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 187 ---------KY--VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred ---------cc--cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 00 01111222222333334566899999996431 001111211111 1 1123455
Q ss_pred EEEecchHH-HHhh-hcc-cceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChH-HHHHHHH
Q 045012 299 VVTHRNQDV-AATM-RAV-SGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPL-AAKTLGG 370 (576)
Q Consensus 299 lvTtR~~~v-~~~~-~~~-~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PL-ai~~~~~ 370 (576)
|.||..... ...+ ... ..+.+...+.++-.+++...+..... .. ..+....|++.+.|..- +|..+..
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PL---TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CS---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556654321 1111 122 35778888999999988876643221 11 13456788899988544 6655543
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.86 E-value=0.00021 Score=70.35 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=82.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
..+.+.|+|++|+|||+||+.+++. .... ++.+. ..++.. ...+.. .. .+...+.....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~~l~~----~~~g~~---~~---~~~~~f~~a~~ 106 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GPELLT----MWFGES---EA---NVREIFDKARQ 106 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HHHHHH----HHHTTC---TT---HHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hHHHHh----hhcCch---HH---HHHHHHHHHHh
Confidence 4567899999999999999999973 2211 22222 222222 222211 11 22233333334
Q ss_pred CCeEEEEEeCCCCCChh--------------hhhhhccCCCC--CCCCceEEEEecchHHH-Hhh-h---cccceecCCC
Q 045012 264 GKKFLLVLDDVWNENYN--------------SWCTLSCPFGA--GASGSKIVVTHRNQDVA-ATM-R---AVSGKTLKEL 322 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~gs~ilvTtR~~~v~-~~~-~---~~~~~~l~~L 322 (576)
..+.+|+||+++..... ....+...+.. ...+..||.||...... ..+ . -...+.+...
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 57899999999642100 01222222211 12356677777655322 111 1 2246788888
Q ss_pred ChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCChHH
Q 045012 323 SDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLPLA 364 (576)
Q Consensus 323 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLa 364 (576)
+.++-.+++......... .....+ ..+++.+.|.|-+
T Consensus 187 ~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp CHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 988888888766533221 111222 3455667776543
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.83 E-value=0.00019 Score=70.95 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=64.5
Q ss_pred cccchhHHHHHHHHhcCC---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDD---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+...+.... ..+......+.|+|++|+|||++|+.+++. ....-...+.++.+..... .....++
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~-~~~~~l~ 96 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAVSRLI 96 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCST-THHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccc-ccHHHhc
Confidence 699988888888776531 101223458999999999999999999873 2221122344444432222 1222222
Q ss_pred HhhhCCCCC-CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCC
Q 045012 238 KSIANDHSK-NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPF 289 (576)
Q Consensus 238 ~~l~~~~~~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l 289 (576)
+..... .......+...+. .....+|+||+++.........+...+
T Consensus 97 ---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 97 ---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp ---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 111110 0111122222222 234479999999876655555554433
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00027 Score=79.05 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=86.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~ 235 (576)
.+||+.+++++.+.|... ...-+.|+|++|+|||++|+.+++...... .....+|. +. ...+
T Consensus 188 ~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~----~~~l--- 253 (758)
T 1r6b_X 188 LIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LD----IGSL--- 253 (758)
T ss_dssp CCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CC----CC-----
T ss_pred ccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-Ec----HHHH---
Confidence 489999999999999643 345678999999999999999987321110 01222221 11 0000
Q ss_pred HHHhhhCCCCCCCCCHHH-HHHHHHHhhcCCeEEEEEeCCCCC--------ChhhhhhhccCCCCCCCCceEEEEecchH
Q 045012 236 ILKSIANDHSKNDDDLNL-LQEKLKKQLSGKKFLLVLDDVWNE--------NYNSWCTLSCPFGAGASGSKIVVTHRNQD 306 (576)
Q Consensus 236 il~~l~~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 306 (576)
+... . .....+. +...+...-..++.+|++|+++.. .......++..+... .+..+|.+|....
T Consensus 254 ----~~~~-~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 ----LAGT-K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQE 326 (758)
T ss_dssp -----CCC-C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHH
T ss_pred ----hccc-c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchH
Confidence 0000 0 1222332 233333333446799999999754 112222233333322 3456666665543
Q ss_pred HHHh-------hhcccceecCCCChHHHHHHHHHhh
Q 045012 307 VAAT-------MRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 307 v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.... ......+.+.+.+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 3211 1122468899999999988887543
No 56
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.73 E-value=2.2e-05 Score=68.22 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=61.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
+|+...++++.+.+.... ....-|.|+|++|+|||++|+.+++... -++.+... +. ....
T Consensus 7 iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~---~~~~---- 66 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EY---LIDM---- 66 (143)
T ss_dssp -CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-TH---HHHC----
T ss_pred eeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hC---ChHh----
Confidence 788888888888775432 1224478999999999999999887321 22222211 11 0000
Q ss_pred hCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC-CCCceEEEEecc
Q 045012 241 ANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG-ASGSKIVVTHRN 304 (576)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTtR~ 304 (576)
...+... .+.-.|+||+++.........+...+... ..+.++|.||..
T Consensus 67 --------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 12357899999886654444444444322 245678887764
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.73 E-value=0.00018 Score=75.61 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=99.4
Q ss_pred ccccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHH
Q 045012 160 SDGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRV 232 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 232 (576)
.+|.+..+++|.+++..... -+....+-+.|+|++|+|||+||+.+++. .... .+.++.
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~--------- 271 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLING--------- 271 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEH---------
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEc---------
Confidence 37999988888887753200 00134567899999999999999999873 2211 122221
Q ss_pred HHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhccCCC--CCCCCceEE
Q 045012 233 TQSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLSCPFG--AGASGSKIV 299 (576)
Q Consensus 233 ~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~--~~~~gs~il 299 (576)
..+...+ .......+...+.....+++.+|+||+++.... .....+...+. ....+..||
T Consensus 272 -~~l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 272 -PEIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp -HHHHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred -hHhhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 1111111 111222333444455567789999999942110 11122222222 122345566
Q ss_pred EEecchHH-HHhh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC-hHHHHHHH
Q 045012 300 VTHRNQDV-AATM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL-PLAAKTLG 369 (576)
Q Consensus 300 vTtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~-PLai~~~~ 369 (576)
.||..+.. ...+ .....+.+...+.++-.++|...+..... ..... ...+++.+.|. +-.|..+.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHHH
Confidence 67665422 1111 12245888999999999999877643221 11122 34566777774 55555443
No 58
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00036 Score=70.63 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=93.0
Q ss_pred cccchhHHHHHHHHhcC----C---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRD----D---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.-+ + .-+-..++-+.++|++|+|||.||+++++. ....| +.+..+.-.+
T Consensus 151 gGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s----- 220 (405)
T 4b4t_J 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ----- 220 (405)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC-----
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc-----
Confidence 57777777766554321 0 001245677899999999999999999983 22222 2233221111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh--------h------hhhhhccCCC--CCCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------N------SWCTLSCPFG--AGASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------~------~~~~l~~~l~--~~~~gs~ 297 (576)
.. .......+...+...-...+++|++|+++..-. . ....++..+. ....+..
T Consensus 221 ---------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 221 ---------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp ---------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ---------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 10 112222233333333356789999999965210 0 1112222222 1233555
Q ss_pred EEEEecchHHH-----HhhhcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 298 IVVTHRNQDVA-----ATMRAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 298 ilvTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
||.||..+... ....-...+.+...+.++-.++|..+.-.... ...-+ ...|++.+.|.-
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 66677654321 11123467888888888888888766533221 11122 355777887753
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.68 E-value=0.00018 Score=75.24 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=60.5
Q ss_pred EEEEEeCCCCCChhhhhhhccCCCCCCCCceEE-EE---------ec----chHH-HHhhhcccceecCCCChHHHHHHH
Q 045012 267 FLLVLDDVWNENYNSWCTLSCPFGAGASGSKIV-VT---------HR----NQDV-AATMRAVSGKTLKELSDDDCLRVL 331 (576)
Q Consensus 267 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vT---------tR----~~~v-~~~~~~~~~~~l~~L~~~ea~~L~ 331 (576)
-++++|+++..+....+.+...+...... .+| .| |. ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 49999999888777777777776654444 344 34 22 1111 111223345799999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhc-CCChHHHHHHH
Q 045012 332 IQHSLGAGVFNIRQSLKEVAEKIAKKC-KGLPLAAKTLG 369 (576)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~I~~~c-~G~PLai~~~~ 369 (576)
...+...+. .. ..+....|++.+ +|.|.....+.
T Consensus 376 ~~~~~~~~~-~~---~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI-NI---SEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC-CB---CHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC-CC---CHHHHHHHHHHccCCCHHHHHHHH
Confidence 876532111 11 135567788888 78887554443
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.63 E-value=4.9e-05 Score=66.44 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+.|+|++|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.63 E-value=0.00018 Score=69.45 Aligned_cols=44 Identities=20% Similarity=0.065 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|....+.++.+.+.... .....+.|+|++|+|||+||+.+++.
T Consensus 9 ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 9 LGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp -CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 788888888887765432 12356789999999999999999874
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.54 E-value=0.00016 Score=80.73 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=79.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccch---hccccceEEEEeCCCCChhHHHHHH
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRV---QRHFEIKAWTCVSEDFDVSRVTQSI 236 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i 236 (576)
.+||+.+++++...|... ...-+.++|++|+|||++|+.+.+...- .......-++.+.-
T Consensus 182 iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred ccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 499999999999999653 2345789999999999999999874210 00000111111111
Q ss_pred HHhhhCCCC-CCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHH------
Q 045012 237 LKSIANDHS-KNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA------ 309 (576)
Q Consensus 237 l~~l~~~~~-~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~------ 309 (576)
+.... .-...... .+......++.+|++|.- . .....+...+. ....++|.||.......
T Consensus 245 ----g~~~~G~~e~~l~~---~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ----GTKYRGEFEDRLKK---VMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ----cccccchHHHHHHH---HHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 10000 01122222 333333467889999921 1 12223333333 22456666665544211
Q ss_pred -hhhcccceecCCCChHHHHHHHHHhh
Q 045012 310 -TMRAVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 310 -~~~~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
.......+.+.+.+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11123568999999999999998654
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00068 Score=69.65 Aligned_cols=176 Identities=15% Similarity=0.150 Sum_probs=93.2
Q ss_pred cccchhHHHHHHHHhcC----C---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRD----D---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.-+ + .-+-..++-|.++|++|+|||.||+++++. ....| +.+..+.-.+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s----- 253 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD----- 253 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC-----
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc-----
Confidence 57777777766654321 0 001345688999999999999999999983 22222 2233222111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh--------------hhhhhhccCCC--CCCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWCTLSCPFG--AGASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs~ 297 (576)
.. .......+...+...-...+++|++|+++..-. .....++..+. ....+..
T Consensus 254 ---------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 254 ---------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp ---------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred ---------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 00 111222223333333356799999999964210 01122322222 1224556
Q ss_pred EEEEecchHHHH-hh-h---cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 298 IVVTHRNQDVAA-TM-R---AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 298 ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
||.||..+.... .+ . -...+.+...+.++-.++|..+...... ....+ ...|++.+.|.-
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred EEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 777776553321 11 1 2346777777777777888766543221 11122 355677887753
No 64
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.49 E-value=0.00062 Score=66.98 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHhcC--CC------CCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRD--DL------RPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~--~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..++.+...+... .. ........+.|+|++|+|||++|+.+.+.
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 78888888887776531 00 00123456889999999999999999873
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0005 Score=70.53 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=86.7
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-+..+++|.+.+...-. -+-..++-+.++|++|+|||+||+++++. ....| +.+..+.-.+
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~----- 244 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH----- 244 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-----
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-----
Confidence 5777777777665432100 01345677999999999999999999983 22222 2233222111
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC----------Ch----hhhhhhccCCC--CCCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE----------NY----NSWCTLSCPFG--AGASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~----------~~----~~~~~l~~~l~--~~~~gs~ 297 (576)
.. .......+...+...-...+++|++|+++.. .. .....++..+. ....+..
T Consensus 245 ---------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 245 ---------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp ---------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred ---------cc--cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 00 1122222333333334567899999998421 00 01122222221 1234556
Q ss_pred EEEEecchHHH-Hhh----hcccceecCCCChHHH-HHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVA-ATM----RAVSGKTLKELSDDDC-LRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~ea-~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||.||..+... ..+ .-...+.+..++..++ ..+|..+.-.... ....+ ...|++.+.|.
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-APEAD----LDSLIIRNDSL 378 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-CTTCC----HHHHHHHTTTC
T ss_pred EEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHHCCCC
Confidence 67777654321 111 1224566766655544 4555544432221 11122 34566777774
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.46 E-value=0.00043 Score=68.16 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+...+.++.+.+.... .....|.|+|++|+|||++|+.+++.
T Consensus 5 ig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 788888888888876542 22356789999999999999999873
No 67
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.00081 Score=64.37 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=78.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
.+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+ .. .......+...+......
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--------------~~--~~~~~~~~~~~~~~a~~~ 103 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--------------MF--VGVGASRVRDMFEQAKKA 103 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT--------------SC--CCCCHHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH--------------Hh--hhhhHHHHHHHHHHHHHc
Confidence 345889999999999999999873 22121 2222111100 00 112223333444444455
Q ss_pred CeEEEEEeCCCCCCh--------------hhhhhhccCCC--CCCCCceEEEEecchHHH-Hhhh----cccceecCCCC
Q 045012 265 KKFLLVLDDVWNENY--------------NSWCTLSCPFG--AGASGSKIVVTHRNQDVA-ATMR----AVSGKTLKELS 323 (576)
Q Consensus 265 kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~-~~~~----~~~~~~l~~L~ 323 (576)
.+.++++|+++.... .....+...+. ....+..||.||...... .... -...+.+...+
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 678999999843110 01111221111 112345666677654321 1111 12356677777
Q ss_pred hHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCC-ChHHHHHH
Q 045012 324 DDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKG-LPLAAKTL 368 (576)
Q Consensus 324 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-~PLai~~~ 368 (576)
.++-.+++......... ..... ...++..+.| .+--|..+
T Consensus 184 ~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp HHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHHH
Confidence 77777777665432211 11111 2446777777 66555443
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=0.0005 Score=76.79 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+...+..... .+..+...+.++|++|+|||+||+.+++.. ...-...+.++.+.-.+.
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~-------- 563 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK-------- 563 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS--------
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc--------
Confidence 8999988888888765321 012233479999999999999999998732 111122344444322110
Q ss_pred HhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCC-----------CCCceEEEEecch-
Q 045012 238 KSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAG-----------ASGSKIVVTHRNQ- 305 (576)
Q Consensus 238 ~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTtR~~- 305 (576)
. ......+...++. ....+|+||++..........+...+..+ ..+..||+||...
T Consensus 564 ------~---~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 564 ------H---STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp ------C---CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ------c---ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 0 0001111222221 23459999999876655555554433321 1356788888731
Q ss_pred ----HH----HHhh-----hc-ccceecCCCChHHHHHHHHHh
Q 045012 306 ----DV----AATM-----RA-VSGKTLKELSDDDCLRVLIQH 334 (576)
Q Consensus 306 ----~v----~~~~-----~~-~~~~~l~~L~~~ea~~L~~~~ 334 (576)
.+ ...+ .. ...+.+.+++.++-..++...
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 1111 11 136677777777766665443
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.42 E-value=0.00097 Score=69.54 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=80.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSG 264 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~ 264 (576)
++-+.|+|++|+|||+||+.+++. ....| +.++.+.-... + ...........+......
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~----------~------~g~~~~~~r~lf~~A~~~ 107 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL----------F------VGVGAARVRDLFAQAKAH 107 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC----------C------TTHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH----------H------hcccHHHHHHHHHHHHhc
Confidence 345889999999999999999973 22221 22332221110 0 011122233444445557
Q ss_pred CeEEEEEeCCCCCCh--------------hhhhhhccCCC--CCCCCceEEEEecchHHHH-hh-h---cccceecCCCC
Q 045012 265 KKFLLVLDDVWNENY--------------NSWCTLSCPFG--AGASGSKIVVTHRNQDVAA-TM-R---AVSGKTLKELS 323 (576)
Q Consensus 265 kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~ 323 (576)
.+.+|+||+++.... .....+...+. ....+..||.||..+.... .. . -...+.+...+
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 789999999955211 11222222221 1123556777777654321 11 1 12367788888
Q ss_pred hHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 324 DDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 324 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
.++-.+++..++..... ..... ...|++.+.|..
T Consensus 188 ~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 77777777665533221 11111 344788888876
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.42 E-value=0.00015 Score=69.98 Aligned_cols=48 Identities=31% Similarity=0.290 Sum_probs=30.2
Q ss_pred cccchhHHHHHHHHhcCCC------CCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDL------RPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..++.+.+.+..-.. -+....+-+.|+|++|+|||+||+.+++.
T Consensus 14 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 14 AGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 5666666665554431000 00122344789999999999999999873
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00079 Score=69.09 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=92.0
Q ss_pred cccchhHHHHHHHHhc----CC---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLR----DD---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.- ++ .-+-..++-|.++|++|+|||.||+++++. ....| +.+..+.
T Consensus 212 gGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~-------- 278 (467)
T 4b4t_H 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSE-------- 278 (467)
T ss_dssp TTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG--------
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHH--------
Confidence 5777777777665321 10 001346788999999999999999999983 32222 2232221
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh--------------hhhhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~ 297 (576)
+.... .......+...+...-...+++|++|+++..-. .....++..+.. ...+..
T Consensus 279 ------L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 279 ------LVQKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp ------GCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred ------hhccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 11111 112222233333334456789999999964210 011112222211 223445
Q ss_pred EEEEecchHHH-Hhh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVA-ATM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||.||...... ..+ .-...+.+...+.++-.++|..+.-.... ...-+ ...|++.|.|.
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNS 414 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSC
T ss_pred EEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCC
Confidence 56677554221 111 23356778888888888888766533221 11122 34567788775
No 72
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.34 E-value=0.00077 Score=62.66 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC-----------CCCCCCCCHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN-----------DHSKNDDDLN 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~~~~~~~~~ 252 (576)
.-.++.|+|++|+|||||+..+.. ..-..++|++....++...+. .+....+. ..........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456999999999999999999986 122356787776655554443 33333221 1111122223
Q ss_pred HHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 253 LLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 253 ~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
.....++..+..++-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344555555544578999999854
No 73
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.31 E-value=0.00099 Score=71.14 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
....+.|+|++|+||||||+.++.. ....| .-+.++...+...+.......++ .....+...+.....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~---~~i~~~~~~~~~~~~g~~~~~ig-------~~~~~~~~~~~~a~~ 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS--LGRKF---VRISLGGVRDESEIRGHRRTYVG-------AMPGRIIQGMKKAGK 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH--HTCEE---EEECCCC---------------------------CHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh--cCCCe---EEEEecccchhhhhhhHHHHHhc-------cCchHHHHHHHHhhc
Confidence 4568999999999999999999873 22221 12222221121111111001111 011112222332222
Q ss_pred CCeEEEEEeCCCCCChh----hhhhhccCCCCCC---------------CCceEEEEecchHHH--HhhhcccceecCCC
Q 045012 264 GKKFLLVLDDVWNENYN----SWCTLSCPFGAGA---------------SGSKIVVTHRNQDVA--ATMRAVSGKTLKEL 322 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ilvTtR~~~v~--~~~~~~~~~~l~~L 322 (576)
..+ +++||+++..... ....+...+.... ....||.||...... ........+.+.++
T Consensus 175 ~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~ 253 (543)
T 3m6a_A 175 LNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGY 253 (543)
T ss_dssp SSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCC
T ss_pred cCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCC
Confidence 334 8889999764322 1123333332110 234566666643211 11122357889999
Q ss_pred ChHHHHHHHHHhh
Q 045012 323 SDDDCLRVLIQHS 335 (576)
Q Consensus 323 ~~~ea~~L~~~~~ 335 (576)
+.++-.+++..+.
T Consensus 254 ~~~e~~~Il~~~l 266 (543)
T 3m6a_A 254 TEIEKLEIVKDHL 266 (543)
T ss_dssp CHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHH
Confidence 9999888887654
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.31 E-value=0.0022 Score=62.64 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999983
No 75
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00044 Score=70.98 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=90.3
Q ss_pred cccchhHHHHHHHHhc----CCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLR----DDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.. ++. -+-..++-|.++|++|+|||.||+++++. ....| +.+..+.
T Consensus 184 gGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~-------- 250 (434)
T 4b4t_M 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQ-------- 250 (434)
T ss_dssp CSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGG--------
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhh--------
Confidence 6777777777665321 100 01345678999999999999999999983 22222 2232221
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC------Chh--------hhhhhccCCCC--CCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE------NYN--------SWCTLSCPFGA--GASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~------~~~--------~~~~l~~~l~~--~~~gs~ 297 (576)
+.... .......+...+...-...+++|++|+++.. ... ....++..+.. ...+..
T Consensus 251 ------l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 251 ------LVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp ------GCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred ------hhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 11111 1111222222222233456899999998431 000 11122222221 123455
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||.||..+.... .+ .-...+.+...+.++-.++|..+.-.... ...-+ ...|++.+.|.
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 666776543221 11 12356778877888878888765433221 11112 35567778774
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.20 E-value=0.0013 Score=65.52 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|++..++.+...+... .-+.++|++|+|||+||+.+.+
T Consensus 30 ~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 30 VGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 79999999988888653 3588999999999999999987
No 77
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.0002 Score=70.74 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 165 KDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+.+.+++.... ......+.|+|++|+|||+||..+++.
T Consensus 135 ~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 135 EAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445556665432 112467889999999999999999984
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0016 Score=66.17 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHhcC----CC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRD----DL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.-+ +. -+-..++-|.++|++|+|||.||+++++. ....| +.+..+.
T Consensus 185 gGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~-------- 251 (437)
T 4b4t_I 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE-------- 251 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG--------
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH--------
Confidence 46777777776654321 00 01345678999999999999999999983 22222 2222221
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh--------------hhhhhhccCCC--CCCCCce
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWCTLSCPFG--AGASGSK 297 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~gs~ 297 (576)
+.... .......+...+...-...+++|++|+++..-. .....++..+. ....+..
T Consensus 252 ------l~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 252 ------LIQKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp ------GCCSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred ------hhhcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 11111 111122222333333346789999999864210 01112222221 1223455
Q ss_pred EEEEecchHHHH-hh----hcccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCC
Q 045012 298 IVVTHRNQDVAA-TM----RAVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGL 361 (576)
Q Consensus 298 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~ 361 (576)
||.||..++... .+ .-...+.+...+.++-.++|..+.-.... ...-+ ...|++.+.|.
T Consensus 324 VIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDL 387 (437)
T ss_dssp EEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSC
T ss_pred EEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 666776543321 11 12245677777777777888766533221 11122 34566777764
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.14 E-value=0.0014 Score=74.10 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=69.9
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
+|.+..++.+...+..... .+..+...+.|+|++|+|||++|+.+.+.. ...-...+.++.+..... .. .
T Consensus 561 iG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~-~~----~ 633 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEK-HA----V 633 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSS-GG----G
T ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccch-hH----H
Confidence 7999888888887754311 012334588999999999999999998732 111112233443322211 00 1
Q ss_pred HhhhCCCCC--CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCC-----------CCceEEEEecc
Q 045012 238 KSIANDHSK--NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGA-----------SGSKIVVTHRN 304 (576)
Q Consensus 238 ~~l~~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTtR~ 304 (576)
..+.+.... .......+...++. ....+|+||++..........+...+..+. .++.||+||..
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 111111000 00011122233332 234699999998776665555655554321 24457777764
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.11 E-value=0.0032 Score=66.06 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=34.5
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|++..++.+...+..+ .-+.|+|++|+|||+||+.+.+.
T Consensus 25 vGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp SSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 89999999888877653 36889999999999999999874
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.11 E-value=0.00034 Score=68.38 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=45.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEe--CCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCV--SEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
.+++.|+|++|+|||+||.++... .-..++|++. .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 467889999999999999999873 1123456666 332111 1134556666666666
Q ss_pred cCCeEEEEEeCCCC
Q 045012 263 SGKKFLLVLDDVWN 276 (576)
Q Consensus 263 ~~kr~LlVlDdv~~ 276 (576)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5556 999999954
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.0061 Score=67.38 Aligned_cols=176 Identities=14% Similarity=0.117 Sum_probs=93.9
Q ss_pred cccchhHHHHHHHHh----cCC---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLL----RDD---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~----~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+. .++ .-+-..++-|.++|++|+|||+||+.+++. ...+| +.++.+
T Consensus 207 gGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~--------- 272 (806)
T 3cf2_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP--------- 272 (806)
T ss_dssp CSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH---------
T ss_pred cCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH---------
Confidence 577777777766542 111 012345678999999999999999999983 22222 233221
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-------h----hhhhhccCCCC--CCCCceEEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-------N----SWCTLSCPFGA--GASGSKIVV 300 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~--~~~gs~ilv 300 (576)
++.. .. .......+...+.......+.+|+||+++..-. . ....+...+.. ...+..||.
T Consensus 273 -~l~s----k~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 273 -EIMS----KL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -HHHS----SC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred -Hhhc----cc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 1111 11 122233344445555567899999999964210 0 01112211111 112344555
Q ss_pred EecchHH-HHhhh----cccceecCCCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 301 THRNQDV-AATMR----AVSGKTLKELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 301 TtR~~~v-~~~~~----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
||..... -..+. -...+.+...+.++-.++|..+...... ....+ ...|++++.|.-
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 6655422 22221 2346778888888888888766533211 11122 345777887764
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.89 E-value=0.0024 Score=63.90 Aligned_cols=86 Identities=23% Similarity=0.213 Sum_probs=56.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l~ 259 (576)
.-.++.|+|++|+|||||+.+++... ...-..++|++....++.. .++.++..... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999988642 2222346788776666543 34444433211 3455666666666
Q ss_pred Hhhc-CCeEEEEEeCCCC
Q 045012 260 KQLS-GKKFLLVLDDVWN 276 (576)
Q Consensus 260 ~~l~-~kr~LlVlDdv~~ 276 (576)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5553 4566899999854
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.85 E-value=0.0015 Score=72.88 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=34.7
Q ss_pred cccchhHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..++.+...+..... .+......+.++|++|+|||++|+.+.+.
T Consensus 461 ~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 461 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 6888888877776653211 01233457899999999999999999873
No 85
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0037 Score=60.90 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=54.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHH-HHHHHHh
Q 045012 187 VYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLL-QEKLKKQ 261 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l-~~~l~~~ 261 (576)
++.|.|++|+|||||+.+++........-..++|++....++.. .+++++...+. .+.+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998887642211012457788877777653 25666654321 23455555 4333332
Q ss_pred ---hcCCeEEEEEeCCCC
Q 045012 262 ---LSGKKFLLVLDDVWN 276 (576)
Q Consensus 262 ---l~~kr~LlVlDdv~~ 276 (576)
-.+++-|||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 345788999999954
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.00082 Score=62.62 Aligned_cols=114 Identities=9% Similarity=-0.070 Sum_probs=64.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC-CCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK-NDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l 262 (576)
.-.++.|+|++|+||||++..+.+. ...+-..++.+.... +.. ....+++.++..... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3478999999999999999888763 333322333333222 111 222345555433221 1233455666666655
Q ss_pred cCCe-EEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 263 SGKK-FLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 263 ~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
.+.+ -+||+|.+...+.+..+.+ ..+.+ .|..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 5444 4999999976443333333 22222 267899998853
No 87
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.78 E-value=0.02 Score=57.06 Aligned_cols=159 Identities=13% Similarity=-0.017 Sum_probs=98.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHH-hh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKK-QL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l 262 (576)
-.++..++|+.|.||++.+..+.+... ...|+....+.+... .+..++.+.+.. -+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~----------------------~~~~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN----------------------TDWNAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT----------------------CCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC----------------------CCHHHHHHHhcCcCC
Confidence 357899999999999999988876321 123322111122221 233333333322 12
Q ss_pred cCCeEEEEEeCCCC-CChhhhhhhccCCCCCCCCceEEEEecc-------hHHHHhh-hcccceecCCCChHHHHHHHHH
Q 045012 263 SGKKFLLVLDDVWN-ENYNSWCTLSCPFGAGASGSKIVVTHRN-------QDVAATM-RAVSGKTLKELSDDDCLRVLIQ 333 (576)
Q Consensus 263 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 333 (576)
-+++-++|+|+++. .+...++.+...+....+++.+|++|.. ..+...+ .....++..+++.++....+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35677888999876 5545666676666544457777766533 2333332 2346788999999999888877
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHhcCCChHHHHHHH
Q 045012 334 HSLGAGVFNIRQSLKEVAEKIAKKCKGLPLAAKTLG 369 (576)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~PLai~~~~ 369 (576)
.+-..+. .-..+.+..|++.++|.+..+...-
T Consensus 154 ~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 154 RAKQLNL----ELDDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHHHTTC----EECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHcCC----CCCHHHHHHHHHHhchHHHHHHHHH
Confidence 6643332 1124678889999999988776543
No 88
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.63 E-value=0.0057 Score=61.17 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=53.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhhCCC-----------CCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIANDH-----------SKN 247 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~ 247 (576)
..-.++.|+|++|+|||+||.+++....... .-..++|++....++...+.. ++..++... ...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3457999999999999999999886422111 224678888887777665443 344443321 001
Q ss_pred CCCHHHHHHHHHHhhc---CCeEEEEEeCCC
Q 045012 248 DDDLNLLQEKLKKQLS---GKKFLLVLDDVW 275 (576)
Q Consensus 248 ~~~~~~l~~~l~~~l~---~kr~LlVlDdv~ 275 (576)
......+...+...+. .+.-+||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1222233333334332 456688888873
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.0065 Score=58.66 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=19.6
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|++|+||||||+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999873
No 90
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.61 E-value=0.0053 Score=61.46 Aligned_cols=86 Identities=23% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l~ 259 (576)
.-.++.|+|++|+||||||.+++... ...-..++|++....++.. .++.++..... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988632 2223457888887666543 23444432211 2345666666555
Q ss_pred Hhhc-CCeEEEEEeCCCC
Q 045012 260 KQLS-GKKFLLVLDDVWN 276 (576)
Q Consensus 260 ~~l~-~kr~LlVlDdv~~ 276 (576)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5543 3567999999854
No 91
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.54 E-value=0.0064 Score=61.17 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCC----CCCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHS----KNDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~l~~~l~ 259 (576)
...++.|.|.+|+||||||.+++... ...-..++|++....++.. .+..++.... ....+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45789999999999999999887642 2223467899887766543 2344443211 02345666666666
Q ss_pred Hhhc-CCeEEEEEeCCCC
Q 045012 260 KQLS-GKKFLLVLDDVWN 276 (576)
Q Consensus 260 ~~l~-~kr~LlVlDdv~~ 276 (576)
.... ...-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 6554 3456999999843
No 92
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0048 Score=58.15 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=52.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhc----cccceEEEEeCCCCChhHHHHHHHHhhhCCCC----C----CCCCH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQR----HFEIKAWTCVSEDFDVSRVTQSILKSIANDHS----K----NDDDL 251 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~----~~~~~ 251 (576)
.-.++.|+|++|+|||||+..+........ .-..++|+.....++...+ ..+++.++.... . ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 447999999999999999999886321111 1246778877665554433 334444432210 0 11222
Q ss_pred HH---HHHHHHHhhc-CCeEEEEEeCCCC
Q 045012 252 NL---LQEKLKKQLS-GKKFLLVLDDVWN 276 (576)
Q Consensus 252 ~~---l~~~l~~~l~-~kr~LlVlDdv~~ 276 (576)
.. ....+...+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 2233444443 4678899999843
No 93
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.47 E-value=0.0063 Score=61.02 Aligned_cols=86 Identities=23% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l~ 259 (576)
...++.|.|.+|+||||||.+++... ...-..++|++....++... +..++..... ...+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45799999999999999999888632 22223678888877666431 3444432110 2234555555555
Q ss_pred Hhh-cCCeEEEEEeCCCC
Q 045012 260 KQL-SGKKFLLVLDDVWN 276 (576)
Q Consensus 260 ~~l-~~kr~LlVlDdv~~ 276 (576)
... ..+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 443 24566999999843
No 94
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.44 E-value=0.0075 Score=59.81 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhcc----ccceEEEEeCCCCChhHHHHHHHHhhhCCCC--------CCCCCH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH----FEIKAWTCVSEDFDVSRVTQSILKSIANDHS--------KNDDDL 251 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 251 (576)
.-.++.|+|++|+|||+||.+++........ -..++|++....++...+. .+++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4579999999999999999998864211110 2467888888777666554 34454443210 011222
Q ss_pred H---HHHHHHHHhhc--CCeEEEEEeCCC
Q 045012 252 N---LLQEKLKKQLS--GKKFLLVLDDVW 275 (576)
Q Consensus 252 ~---~l~~~l~~~l~--~kr~LlVlDdv~ 275 (576)
+ ++...+...+. .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23334444443 456788888873
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.40 E-value=0.0043 Score=60.03 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|++|+|||||++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999873
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.39 E-value=0.0018 Score=58.67 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=58.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh-------CCCCCCCCC-------H
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA-------NDHSKNDDD-------L 251 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-------~~~~~~~~~-------~ 251 (576)
..|.|++..|.||||+|-...- +...+-..+.++...... ...--..+++.+. ....-...+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 5677777788999999966654 333333344555443321 1111223334442 000001111 1
Q ss_pred HHHHHHHHHhhcCCe-EEEEEeCCCCC---ChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 252 NLLQEKLKKQLSGKK-FLLVLDDVWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 252 ~~l~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
.......++.+.+.+ =|||||++-.. .....+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 222333445555444 49999998221 1112233444444444567899999985
No 97
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.37 E-value=0.0052 Score=57.35 Aligned_cols=116 Identities=15% Similarity=0.022 Sum_probs=59.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC------------------
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK------------------ 246 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~------------------ 246 (576)
-.++.|+|++|+|||||+..++.... ..-..++|+.... ....+...+. .++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 46899999999999999999885322 1112355555432 3334333322 33211100
Q ss_pred ----CCCCHHHHHHHHHHhhc-CCeE--EEEEeCCCCC---ChhhhhhhccCCCC--CCCCceEEEEecch
Q 045012 247 ----NDDDLNLLQEKLKKQLS-GKKF--LLVLDDVWNE---NYNSWCTLSCPFGA--GASGSKIVVTHRNQ 305 (576)
Q Consensus 247 ----~~~~~~~l~~~l~~~l~-~kr~--LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTtR~~ 305 (576)
...+..++...+...+. .++- +||+|.+... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11145555555554442 2333 9999998531 22222222222211 12467888888764
No 98
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.33 E-value=0.013 Score=57.17 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 262 (576)
...+++|+|++|+||||++..+......... ..+..+.... .....+.+.......+.+.. ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 4579999999999999999988863221111 1334444322 12233334444444433321 12233444444443 3
Q ss_pred cCCeEEEEEeCC
Q 045012 263 SGKKFLLVLDDV 274 (576)
Q Consensus 263 ~~kr~LlVlDdv 274 (576)
.+.=++++|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 44557888944
No 99
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.013 Score=61.28 Aligned_cols=147 Identities=14% Similarity=0.126 Sum_probs=75.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc--
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS-- 263 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~-- 263 (576)
+-+.|+|++|+|||+||+.++... . ...+.++.+.-.+ .. .......++..++
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~--------------~~------~g~~~~~v~~lfq~a 119 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE--------------MF------VGVGAARVRDLFETA 119 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS--------------SC------TTHHHHHHHHHTTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH--------------hh------hhhHHHHHHHHHHHH
Confidence 348999999999999999998732 2 1223333221100 00 0111122333332
Q ss_pred --CCeEEEEEeCCCCCC----------hhh----hhhhccCCCCC--CCCceEEEEecchHHHHh-h----hcccceecC
Q 045012 264 --GKKFLLVLDDVWNEN----------YNS----WCTLSCPFGAG--ASGSKIVVTHRNQDVAAT-M----RAVSGKTLK 320 (576)
Q Consensus 264 --~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~--~~gs~ilvTtR~~~v~~~-~----~~~~~~~l~ 320 (576)
..+.++++|+++... ... ...+...+..+ ..+..++.||..+..... . .....+.+.
T Consensus 120 ~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~ 199 (499)
T 2dhr_A 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199 (499)
T ss_dssp SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECC
T ss_pred HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecC
Confidence 245899999995421 011 12233223222 223455556666544221 1 122467788
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhcCCCh
Q 045012 321 ELSDDDCLRVLIQHSLGAGVFNIRQSLKEVAEKIAKKCKGLP 362 (576)
Q Consensus 321 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~I~~~c~G~P 362 (576)
..+.++-.+++..++-.... .... ....|++.+.|+.
T Consensus 200 ~Pd~~~R~~IL~~~~~~~~l-~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 200 APDVKGREQILRIHARGKPL-AEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp CCCHHHHHHHHHHTTSSSCC-CCSS----TTHHHHTTSCSCC
T ss_pred CCCHHHHHHHHHHHHhcCCC-ChHH----HHHHHHHhcCCCC
Confidence 88888888888766532111 1111 1345777787765
No 100
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.24 E-value=0.0093 Score=66.71 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=80.5
Q ss_pred cccchhHHHHHHHHhcC----C---CCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRD----D---LRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
+|.+..+++|.+++... . .-.-.....+.|+|++|+||||||+.+.+. ....| +.++.+
T Consensus 207 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~--------- 272 (806)
T 1ypw_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP--------- 272 (806)
T ss_dssp CSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH---------
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch---------
Confidence 78888888888877531 0 001234567999999999999999999873 22222 222211
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCCCCh-----------hhhhhhccCCCC--CCCCceEEE
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWCTLSCPFGA--GASGSKIVV 300 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~ilv 300 (576)
++ .... .......+...+.......+.++++|+++.... .....+...+.. ...+..+|.
T Consensus 273 -~l----~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 273 -EI----MSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp -HH----SSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred -Hh----hhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEec
Confidence 11 1110 111112223333334445678999999943210 001112111111 113445566
Q ss_pred EecchHHH-Hhhh----cccceecCCCChHHHHHHHHHhh
Q 045012 301 THRNQDVA-ATMR----AVSGKTLKELSDDDCLRVLIQHS 335 (576)
Q Consensus 301 TtR~~~v~-~~~~----~~~~~~l~~L~~~ea~~L~~~~~ 335 (576)
||...... ..+. -...+.+...+.++-.+++...+
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66553211 1111 11346777888888888887664
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.14 E-value=0.0053 Score=56.25 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=33.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 162 GKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 162 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|++.++.|.+.+.... .....+++|+|++|+|||||++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35566777777776542 24568999999999999999998876
No 102
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.06 E-value=0.0092 Score=59.07 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhc---------cc-----cceEEEEeCCCCChhHHHHHHHHhhhCCCC----
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQR---------HF-----EIKAWTCVSEDFDVSRVTQSILKSIANDHS---- 245 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 245 (576)
.-.++.|+|++|+|||+||.+++.+..... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999998876321111 11 4677888887776665553 3444443210
Q ss_pred ----CCCCCHH---HHHHHHHHhhc--CCeEEEEEeCCC
Q 045012 246 ----KNDDDLN---LLQEKLKKQLS--GKKFLLVLDDVW 275 (576)
Q Consensus 246 ----~~~~~~~---~l~~~l~~~l~--~kr~LlVlDdv~ 275 (576)
....+.+ .+...+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112223 23334444443 345688888873
No 103
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.91 E-value=0.034 Score=54.72 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=37.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKS 239 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 239 (576)
..-.++.|.|.+|+||||||.+++.+..... ..++|++.. .+..++...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3457999999999999999999886432222 456676654 4666777766654
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.91 E-value=0.038 Score=53.60 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhc-cccceEEEEeCCCCChhHHHHHHHHh------hhCCCCCCCCCHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQR-HFEIKAWTCVSEDFDVSRVTQSILKS------IANDHSKNDDDLNLLQ 255 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~~------l~~~~~~~~~~~~~l~ 255 (576)
....+|+|+|+.|+||||||+.+........ .......|+...-+-.......+... +.........+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4578999999999999999998876332211 12234443544333233333333221 1111112445566666
Q ss_pred HHHHHhhcC
Q 045012 256 EKLKKQLSG 264 (576)
Q Consensus 256 ~~l~~~l~~ 264 (576)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666655444
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.64 E-value=0.028 Score=52.21 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchh---c-cccceEEEEeCCCCC
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQ---R-HFEIKAWTCVSEDFD 228 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~ 228 (576)
.-.+++|+|++|+|||||++.++...... . .-...+|+.....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 44799999999999999999987521111 0 123467776554333
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.60 E-value=0.021 Score=57.19 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccc---c-ceEEEEeCCCCChhHHHHHHHHhhhCCCC-----------CC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHF---E-IKAWTCVSEDFDVSRVTQSILKSIANDHS-----------KN 247 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~ 247 (576)
..-.++.|+|++|+|||||+..++......... . .++|++....+.... +..+++..+.... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 355899999999999999999988632111111 2 347887765543333 3334444332110 00
Q ss_pred CCCHHHHHHHHHHhhc------CCeEEEEEeCCCC
Q 045012 248 DDDLNLLQEKLKKQLS------GKKFLLVLDDVWN 276 (576)
Q Consensus 248 ~~~~~~l~~~l~~~l~------~kr~LlVlDdv~~ 276 (576)
.....++...+...+. .++-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112233344444443 4678999999854
No 107
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.57 E-value=0.031 Score=56.86 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchh----ccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQ----RHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
..-.++.|+|++|+|||||+..++-..... ..-..++|++....++...+ ..+++.++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 345799999999999999999765321111 12245778877665554443 33555554
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.50 E-value=0.0067 Score=54.10 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 109
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.48 E-value=0.0067 Score=53.71 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.8
Q ss_pred cEEEEeecCcCcHHHHHHHH
Q 045012 186 SVYSIHGLGGVGKTTLAQLV 205 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v 205 (576)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 110
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.45 E-value=0.013 Score=56.81 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....++.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 111
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.44 E-value=0.14 Score=50.73 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=37.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIA 241 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 241 (576)
.-.++.|.|.+|+||||||..++.+... .-..++|++. ..+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 4469999999999999999998874322 2234555544 4567777777766543
No 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.41 E-value=0.0088 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999986
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.38 E-value=0.0077 Score=53.28 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.37 E-value=0.092 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+.++.++|++|+||||++..+...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888864
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.35 E-value=0.0079 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999886
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.35 E-value=0.076 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++.+|.++|++|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5789999999999999999888763
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.32 E-value=0.014 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+++|+|++|.|||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 118
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.31 E-value=0.17 Score=51.91 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCC---CCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 166 DKEEIVELLLRDDL---RPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 166 e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.+++.++|..... .....+++|.|+|.+|+||||++..+...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556666643211 01245789999999999999999888864
No 119
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.31 E-value=0.033 Score=54.44 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChh--HHHHHHHHhhhCCC--CCCCCCHHH-HHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVS--RVTQSILKSIANDH--SKNDDDLNL-LQEK 257 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~~--~~~~~~~~~-l~~~ 257 (576)
....++.|+|++|+||||++..++.... ..-..+.++.. +.+... +-+...++.++... .....+... ....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3568999999999999999999886332 22123344443 333322 22233444433221 101122222 2334
Q ss_pred HHHhhcCCeEEEEEeCCC
Q 045012 258 LKKQLSGKKFLLVLDDVW 275 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~ 275 (576)
+...+..+.-++++|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555555566688889764
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.24 E-value=0.12 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+++|+|+.|+||||++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998863
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.0099 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 122
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.21 E-value=0.032 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.015 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-..++|+|++|+|||||++.+.+.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHH
Confidence 34568999999999999999988763
No 123
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.011 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999886
No 124
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.20 E-value=0.059 Score=52.93 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|-...+..+...+.... ....+.+++|.|+.|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444445555555554432 245678999999999999999988865
No 125
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.15 E-value=0.017 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+.++.|+|++|+||||+|+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999876
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.12 E-value=0.0043 Score=56.00 Aligned_cols=106 Identities=15% Similarity=0.027 Sum_probs=50.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC--CChhHHHHHHHHhhhCCCCC-CCCCHHHHHHHHHHhh
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED--FDVSRVTQSILKSIANDHSK-NDDDLNLLQEKLKKQL 262 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l 262 (576)
.++.|+|+.|+||||++..+....... ... ++.+..... +... .+...++..... ...+... +.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~-v~~~~~~~d~r~~~~----~i~s~~g~~~~~~~~~~~~~----~~~~~ 73 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KKK-VAVFKPKIDSRYHST----MIVSHSGNGVEAHVIERPEE----MRKYI 73 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCE-EEEEEEC-----CCC----EECC----CEECEEESSGGG----GGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCe-EEEEeeccccccCcc----cEEecCCCceeeEEECCHHH----HHHHh
Confidence 588899999999999996666532211 122 222222110 0000 001111110000 0111111 22233
Q ss_pred cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecc
Q 045012 263 SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRN 304 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 304 (576)
.++.-+|++|.++..+. .|......+.+. |..|++|.+.
T Consensus 74 ~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp CTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred cCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 34567999999977543 344444333322 6788988874
No 127
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.08 E-value=0.0094 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.07 E-value=0.012 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.06 E-value=0.013 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+|.|+|++|.|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 130
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.05 E-value=0.013 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+++|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4579999999999999999999863
No 131
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.05 E-value=0.041 Score=66.31 Aligned_cols=86 Identities=23% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
...+.+.|+|++|+|||+||.++... ...+=...+|+++.+.++... ++.++..... .+.+.++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 35689999999999999999998773 333334567887777666554 4444422111 233445555555
Q ss_pred HHhh-cCCeEEEEEeCCC
Q 045012 259 KKQL-SGKKFLLVLDDVW 275 (576)
Q Consensus 259 ~~~l-~~kr~LlVlDdv~ 275 (576)
+... ..+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5544 3567899999984
No 132
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.04 E-value=0.012 Score=53.82 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998763
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.97 E-value=0.012 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.93 E-value=0.014 Score=53.30 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|++|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 135
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.92 E-value=0.048 Score=56.20 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=33.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC-hhHHHHHHH
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD-VSRVTQSIL 237 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il 237 (576)
+.++|+|.+|+|||||++.+..+.... .-...+++.+++..+ ..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468999999999999999998743222 224456666665542 334444443
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.90 E-value=0.017 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.90 E-value=0.015 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 138
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.85 E-value=0.013 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|.|.|++|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 139
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.84 E-value=0.013 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999763
No 140
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.83 E-value=0.013 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.82 E-value=0.016 Score=58.11 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=60.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChh--HHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVS--RVTQSILKSIANDHSKNDDDLNLLQEKLKKQLS 263 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 263 (576)
.+++|+|+.|.|||||.+.+... ........+ +.+.++.... .. ..++.+... ..+.......+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-----~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESK-KCLVNQREV-----HRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCS-SSEEEEEEB-----TTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhcc-ccceeeeee-----ccccCCHHHHHHHHhh
Confidence 59999999999999999988762 211112222 2222221110 00 000000000 0111223457888888
Q ss_pred CCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHHH
Q 045012 264 GKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA 309 (576)
Q Consensus 264 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 309 (576)
..+=+|++|.+.+ .+.+..+.... ..|..||+|+.....+.
T Consensus 195 ~~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 195 EDPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp SCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred hCcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8999999999964 34444433332 23666888988765543
No 142
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.81 E-value=0.014 Score=52.26 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..++|.|+|++|+||||+++.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999886
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.76 E-value=0.015 Score=52.36 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 144
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.73 E-value=0.014 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|++|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997553
No 145
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.72 E-value=0.025 Score=56.97 Aligned_cols=48 Identities=27% Similarity=0.261 Sum_probs=33.8
Q ss_pred cccchhHHHHHHHHhcC-------C--CCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRD-------D--LRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 78888777777766210 0 001124567899999999999999999873
No 146
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.70 E-value=0.017 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+++|+|++|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 147
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.67 E-value=0.018 Score=52.97 Aligned_cols=24 Identities=42% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.64 E-value=0.019 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.63 E-value=0.019 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|.|++|+||||+++.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.63 E-value=0.021 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 151
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.58 E-value=0.02 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999886
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.58 E-value=0.016 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+.++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36889999999999999999875
No 153
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.57 E-value=0.015 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999876
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 155
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.53 E-value=0.021 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|+|++|+||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999876
No 156
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.50 E-value=0.022 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|.|+|++|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999876
No 157
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.49 E-value=0.019 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 158
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.49 E-value=0.022 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 159
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.49 E-value=0.019 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 160
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.47 E-value=0.017 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 161
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.41 E-value=0.021 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998873
No 162
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.41 E-value=0.02 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|.|.|++|+||||+++.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 163
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.38 E-value=0.017 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 164
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.38 E-value=0.02 Score=52.92 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.6
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-...++|.|.|++|+||||.|+.+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998863
No 165
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.38 E-value=0.019 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999863
No 166
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.37 E-value=0.037 Score=50.25 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-+..+..++.. -+....+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~-----iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKG-----TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHT-----CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 35556666542 123457999999999999999888873
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.36 E-value=0.022 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 168
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.36 E-value=0.022 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.+++|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.35 E-value=0.026 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 170
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.33 E-value=0.021 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 171
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.32 E-value=0.026 Score=50.71 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999873
No 172
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.31 E-value=0.021 Score=51.99 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 173
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.29 E-value=0.023 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.27 E-value=0.022 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.25 E-value=0.085 Score=63.69 Aligned_cols=88 Identities=23% Similarity=0.134 Sum_probs=58.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
....++.|+|++|+||||||.+++... ...-..++|++....++... ++.++..... .+.+.+++.+.+
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 355799999999999999999998743 22224577887776665431 4555543221 345667777666
Q ss_pred HHhh-cCCeEEEEEeCCCCC
Q 045012 259 KKQL-SGKKFLLVLDDVWNE 277 (576)
Q Consensus 259 ~~~l-~~kr~LlVlDdv~~~ 277 (576)
+... ..+.-+||+|-+...
T Consensus 454 ~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHhcCCcEEEECCHHHh
Confidence 6544 345679999998543
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.24 E-value=0.017 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.366 Sum_probs=16.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.22 E-value=0.023 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 178
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.20 E-value=0.024 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.19 E-value=0.02 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 180
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.19 E-value=0.027 Score=51.74 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+|.|.|++|+||||+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 181
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.14 E-value=0.029 Score=54.82 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|++|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 567999999999999999999886
No 182
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.12 E-value=0.027 Score=51.63 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+|+|.|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.12 E-value=0.027 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999876
No 184
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.11 E-value=0.024 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.09 E-value=0.025 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 186
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.07 E-value=0.025 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..|.|.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 187
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.05 E-value=0.45 Score=48.12 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=33.0
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|....+.++.+.+..-. ..... |.|.|.+|+|||++|+.+..
T Consensus 139 ~ig~s~~m~~l~~~i~~~a---~~~~~-vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKIS---CAECP-VLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHT---TCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred hhhccHHhhHHHHHHHHhc---CCCCC-eEEecCCCcCHHHHHHHHHH
Confidence 4777777888877765532 23334 48999999999999998876
No 188
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.04 E-value=0.1 Score=48.72 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhccc-chhccc-cceEEEEeCCCCChhHHHHHHHHhhhCC
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDD-RVQRHF-EIKAWTCVSEDFDVSRVTQSILKSIAND 243 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~ 243 (576)
..++++..+..+ +.+.|.|+.|.||||+.....-+. ...... ...+.+..........+...+...++..
T Consensus 65 ~q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 65 FESEILEAISQN--------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 455666666433 589999999999998765554321 111121 2233333333222334444444433322
Q ss_pred CCC-------------------CCCCHHHHHHHHHHhhcCCeEEEEEeCCCCC
Q 045012 244 HSK-------------------NDDDLNLLQEKLKKQLSGKKFLLVLDDVWNE 277 (576)
Q Consensus 244 ~~~-------------------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~ 277 (576)
... ...+...+...+...+.+- -+||+|.++..
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 100 0123456666666544433 47899999863
No 189
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.01 E-value=0.029 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 190
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.01 E-value=0.027 Score=53.46 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 191
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.01 E-value=0.079 Score=63.07 Aligned_cols=87 Identities=23% Similarity=0.143 Sum_probs=58.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKLK 259 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l~ 259 (576)
.-+++.|+|++|+||||||.+++... ...-..++|++....++.. .++.++..... .+.+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 45799999999999999999988743 2233467888877766553 14455433211 3345666666665
Q ss_pred Hhh-cCCeEEEEEeCCCCC
Q 045012 260 KQL-SGKKFLLVLDDVWNE 277 (576)
Q Consensus 260 ~~l-~~kr~LlVlDdv~~~ 277 (576)
... ..+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 544 345679999998653
No 192
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.00 E-value=0.065 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.99 E-value=0.03 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999876
No 194
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.98 E-value=0.03 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+++|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998876
No 195
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.97 E-value=0.29 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998863
No 196
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.95 E-value=0.029 Score=56.01 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 169 EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 169 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++++.|.. -..-.-++|+|.+|+|||+|+..+.+.
T Consensus 164 raID~l~P-----igrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 164 RLIDLFAP-----IGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHSC-----CBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhhccc-----ccCCceEEEecCCCCChhHHHHHHHHH
Confidence 55666643 234567899999999999999998874
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.94 E-value=0.13 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...++.|+|++|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888763
No 198
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.93 E-value=0.14 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+++|+|.+|+||||++..++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.93 E-value=0.22 Score=51.50 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=36.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
...++.|.|.+|+||||||..++.+.... .-..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 45799999999999999999988743221 12346666554 45667777766543
No 200
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.89 E-value=0.032 Score=52.64 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998876
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.88 E-value=0.031 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.87 E-value=0.03 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....|.|.|++|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 203
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.85 E-value=0.18 Score=53.93 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=53.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHH-Hhh--
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLK-KQL-- 262 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l-- 262 (576)
+++.|.|++|+||||++..+...... . ...+.+..... .....+.+.++.. ..+...+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~--~-g~~Vl~~ApT~----~Aa~~L~e~~~~~----a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES--L-GLEVGLCAPTG----KAARRLGEVTGRT----ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH--T-TCCEEEEESSH----HHHHHHHHHHTSC----EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh--c-CCeEEEecCcH----HHHHHhHhhhccc----HHHHHHHHcCCcchhhhh
Confidence 68999999999999999888763221 1 12333433221 1222222222211 111111100000 000
Q ss_pred ---cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe
Q 045012 263 ---SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 263 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 302 (576)
..+.-+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 0123489999997776666777776665 456666654
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.84 E-value=0.029 Score=50.53 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 205
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.83 E-value=0.32 Score=50.02 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHh
Q 045012 169 EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKS 239 (576)
Q Consensus 169 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~ 239 (576)
+.++.|..- .+-.-++|.|.+|+|||+|+..+.++. .+.+-+..+++-+++.. ...+++.++...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 355555432 344678999999999999999988742 12233556777777654 345666666553
No 206
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.82 E-value=0.03 Score=49.23 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 207
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.81 E-value=0.036 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|.|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999886
No 208
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.79 E-value=0.032 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999986
No 209
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.79 E-value=0.021 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 210
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.78 E-value=0.027 Score=53.45 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|++|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999873
No 211
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.74 E-value=0.034 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...|+|.|++|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.73 E-value=0.23 Score=52.30 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=37.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
..-.++.|.|.+|+||||||.+++.+.... +-..++|++.. .+..++...++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E--~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLE--ESVEETAEDLIGLH 294 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEecc--CCHHHHHHHHHHHH
Confidence 345789999999999999999988643221 12346676653 35667777666543
No 213
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.73 E-value=0.05 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+..|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 214
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.67 E-value=0.61 Score=58.35 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=45.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
+-+.++|++|+|||++|+.+.... ..+ ....++.+...+...+...+-..+.........- ..-.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~-------~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT-------LLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-------EEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-------ccCCCCCc
Confidence 567899999999999997776532 122 2345666666666555444443332110000000 00001367
Q ss_pred eEEEEEeCCCCC
Q 045012 266 KFLLVLDDVWNE 277 (576)
Q Consensus 266 r~LlVlDdv~~~ 277 (576)
+.+|++||+.-.
T Consensus 1337 ~~VlFiDEinmp 1348 (2695)
T 4akg_A 1337 NLVLFCDEINLP 1348 (2695)
T ss_dssp CEEEEEETTTCS
T ss_pred eEEEEecccccc
Confidence 889999997543
No 215
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.66 E-value=0.052 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999998864
No 216
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.033 Score=51.42 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998874
No 217
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.61 E-value=0.041 Score=53.20 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHh
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~ 206 (576)
..+.+|+|+|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999887
No 218
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.61 E-value=0.082 Score=51.88 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 224 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 224 (576)
.+.+||+|.|-|||||||.+-.+... ....-..+.-+.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 46799999999999999999777652 22222345556655
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.59 E-value=0.17 Score=49.11 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=46.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCC-CChhHHHHHHHHhhhCCCC--CCCCCHHHHHHHHHHh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED-FDVSRVTQSILKSIANDHS--KNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~--~~~~~~~~l~~~l~~~ 261 (576)
..++.++|.+|+||||++..+..... ..-..+.++..... ....+.+.......+.+.. ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999988886322 22223444443321 1222333344444433211 0123344443323333
Q ss_pred hc-CCeEEEEEeCCCC
Q 045012 262 LS-GKKFLLVLDDVWN 276 (576)
Q Consensus 262 l~-~kr~LlVlDdv~~ 276 (576)
+. ..-=++++|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 33 3333788887643
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.59 E-value=0.04 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.59 E-value=0.067 Score=53.03 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 165 KDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++++.+...- ..+....+.|+|++|+||||+++.++.
T Consensus 6 ~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 6 KLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 33445555553221 123456789999999999999998886
No 222
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.57 E-value=0.26 Score=51.08 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=34.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILK 238 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 238 (576)
.-.++.|.|.+|+|||||+..++.+.... .-..++|++.. .+...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 44699999999999999999988743221 12246666543 345566666543
No 223
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.53 E-value=0.077 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998876
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.46 E-value=0.041 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+|.|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998863
No 225
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.45 E-value=0.036 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.40 E-value=0.2 Score=51.94 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD 228 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 228 (576)
....+++|+|++|+|||||++.+..-.. .....+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccc
Confidence 3567999999999999999999886322 123455554444444
No 227
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.37 E-value=0.04 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999998876
No 228
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.36 E-value=0.34 Score=49.93 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=35.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSI 240 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 240 (576)
...++.|.|.+|+||||||.+++.+.... -..++|++ -..+..++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS--lEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS--LEMGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC--SSSCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE--CCCCHHHHHHHHHHHH
Confidence 45789999999999999999988753222 12455554 4445666666666543
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.35 E-value=0.097 Score=57.88 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=54.3
Q ss_pred cccchhHHHHHHHHhcCCC-------CCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHH
Q 045012 161 DGKEKDKEEIVELLLRDDL-------RPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVT 233 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 233 (576)
.|-++.+++|.+.+.-... .+-..++-+.++|++|.|||.||+++++. .... ++.++.
T Consensus 480 ggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~-------- 544 (806)
T 3cf2_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG-------- 544 (806)
T ss_dssp CSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH--------
T ss_pred CCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc--------
Confidence 4566666666655432210 01234566889999999999999999983 2221 233321
Q ss_pred HHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEeCCCC
Q 045012 234 QSILKSIANDHSKNDDDLNLLQEKLKKQLSGKKFLLVLDDVWN 276 (576)
Q Consensus 234 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 276 (576)
.+++.... ......+.+.+...-+..+++|+||+++.
T Consensus 545 ~~l~s~~v------Gese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PELLTMWF------GESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHHHTTTC------SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred chhhcccc------chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 12222211 22233444444444456799999999964
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.33 E-value=0.039 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 447999999999999999998874
No 231
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.32 E-value=0.04 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 232
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.30 E-value=0.1 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+.++|+|+|.+|+|||||...+...
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 34678999999999999999999874
No 233
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.28 E-value=0.12 Score=53.37 Aligned_cols=85 Identities=25% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccchhccccc-eEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHHH-
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLNL- 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~- 253 (576)
.-.-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+++.. .+.++..++...=.... ..+.+....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 4467899999999999995 5777632 2343 3566676654 34555555554211111 001111111
Q ss_pred --------HHHHHHHhhcCCeEEEEEeCC
Q 045012 254 --------LQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 254 --------l~~~l~~~l~~kr~LlVlDdv 274 (576)
..+.++. .++..||++||+
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 2223333 589999999998
No 234
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.27 E-value=0.033 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=20.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 235
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.22 E-value=0.04 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999988864
No 236
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.21 E-value=0.043 Score=54.65 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=29.3
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.+..+..+...+... ...-+.|+|++|+|||+||+.+.+.
T Consensus 27 ~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 27 VGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred cChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHHh
Confidence 78777555544433321 1123889999999999999999873
No 237
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.19 E-value=0.032 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHh-c
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVY-N 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~-~ 207 (576)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 238
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.19 E-value=0.049 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.17 E-value=0.075 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+.++|++|+|||++|+.+++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999873
No 240
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.15 E-value=0.05 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.. .+++|+|+.|.|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7999999999999999998875
No 241
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.14 E-value=0.049 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++.|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998863
No 242
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.13 E-value=0.13 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.+.|.|.+|+|||+++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999888874
No 243
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.13 E-value=0.28 Score=50.69 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHHHHHh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQSILKS 239 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~ 239 (576)
+-.-++|.|.+|+|||+|+..+.++. .+.+-+..+++-+++.. ...+++.++...
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 44678999999999999999988742 12344677888887665 455666666653
No 244
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.09 E-value=0.043 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.09 E-value=0.05 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+++|+|+.|+||||++..++.-
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998863
No 246
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.08 E-value=0.077 Score=49.71 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=27.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 224 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 224 (576)
.-.++.|.|++|+|||||+.+++... ...-..++|++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcc
Confidence 34689999999999999998876532 2222356676644
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.05 E-value=0.053 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999998875
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.96 E-value=0.051 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.95 E-value=0.095 Score=52.47 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+.+.+... .....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34445445332 246789999999999999999988753
No 250
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.83 E-value=0.034 Score=53.99 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 251
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.77 E-value=0.052 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.74 E-value=0.062 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 253
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.70 E-value=0.13 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.|+|-|..|+||||.++.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999874
No 254
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.70 E-value=0.059 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 255
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.68 E-value=0.064 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999863
No 256
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.66 E-value=0.098 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 257
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.65 E-value=0.05 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|+.|.|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 258
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.65 E-value=0.057 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 259
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.63 E-value=0.065 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|+|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 260
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.61 E-value=0.068 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999998863
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.59 E-value=0.055 Score=48.30 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 262
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.58 E-value=0.06 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.57 E-value=0.055 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+|.|.|+||+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 264
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.55 E-value=0.069 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..++|.|+|+.|+|||||+..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 265
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.54 E-value=0.063 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999998864
No 266
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.51 E-value=0.06 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 267
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.45 E-value=0.068 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+++|+|+.|+|||||+..++.-
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34679999999999999999998863
No 268
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.44 E-value=0.067 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999886
No 269
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.43 E-value=0.069 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.42 E-value=0.062 Score=51.65 Aligned_cols=23 Identities=43% Similarity=0.398 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999875
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.41 E-value=0.072 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||.+.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346999999999999999998875
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.40 E-value=0.061 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 273
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.38 E-value=0.063 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 274
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.38 E-value=0.076 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++.|.|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3457899999999999999999886
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.35 E-value=0.21 Score=59.54 Aligned_cols=85 Identities=22% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC----CCCCHHHHHHHH
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK----NDDDLNLLQEKL 258 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~l~~~l 258 (576)
+.-++|-|+|+.|+||||||.++.. +....-...+|+...+..++.- ++.++..... .++.-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3458999999999999999999886 3445556788888877777653 6666654432 344445555555
Q ss_pred HHhhc-CCeEEEEEeCC
Q 045012 259 KKQLS-GKKFLLVLDDV 274 (576)
Q Consensus 259 ~~~l~-~kr~LlVlDdv 274 (576)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 45669999998
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.30 E-value=0.061 Score=49.58 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.27 E-value=0.11 Score=53.49 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+.+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888764
No 278
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.26 E-value=0.085 Score=50.07 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....++.+.|.||+|||||+..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999998853
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.25 E-value=0.068 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999875
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.24 E-value=0.077 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||.+.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.22 E-value=0.081 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.-.+++|+|+.|.|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3457999999999999999998875
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.22 E-value=0.11 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....+++|+|++|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999988763
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.19 E-value=0.08 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999875
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.19 E-value=0.069 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999875
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.19 E-value=0.069 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999886
No 286
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.18 E-value=0.078 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998864
No 287
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.18 E-value=0.068 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.17 E-value=0.072 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999876
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.17 E-value=0.074 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.++.|+|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 347999999999999999998876
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.16 E-value=0.081 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.16 E-value=0.083 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.1
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999886
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.13 E-value=0.075 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999886
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.10 E-value=0.086 Score=51.22 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.+++|.|++|+|||||+..++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998864
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.09 E-value=0.083 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.07 E-value=0.068 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.++|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 296
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.04 E-value=0.075 Score=50.19 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999875
No 297
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.03 E-value=0.19 Score=52.05 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=48.9
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccchhccccc-eEEEEeCCCC-ChhHHHHHHHHhhhC-------CCCCCCCCHH-
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEDF-DVSRVTQSILKSIAN-------DHSKNDDDLN- 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~- 252 (576)
.-.-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+++.. .+.++...+...=.. ...+.+....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3467899999999999995 5777632 2343 4566666554 355566666542111 1110111111
Q ss_pred -------HHHHHHHHhhcCCeEEEEEeCC
Q 045012 253 -------LLQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 253 -------~l~~~l~~~l~~kr~LlVlDdv 274 (576)
...+.++. .++..||++||+
T Consensus 250 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 12222333 579999999998
No 298
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.03 E-value=0.076 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4557999999999999999998876
No 299
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.03 E-value=0.11 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35677899999999999999999864
No 300
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.01 E-value=0.18 Score=49.13 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF 227 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 227 (576)
....++|+|+|-||+||||+|..+.... ...-..++-+......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence 3466899999999999999998887632 2222345566655433
No 301
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.93 E-value=0.12 Score=45.50 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677899999999999999998764
No 302
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.92 E-value=0.14 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++-+.++|++|+|||++|+.++.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Confidence 346689999999999999999987
No 303
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.91 E-value=0.089 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.89 E-value=0.091 Score=50.06 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=56.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC-CCChhHHHHHHHH--hhhCCCCCCCCCHHHHHHHHHHh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE-DFDVSRVTQSILK--SIANDHSKNDDDLNLLQEKLKKQ 261 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~--~l~~~~~~~~~~~~~l~~~l~~~ 261 (576)
-.+++|+|+.|+|||||.+.+..-. ...+...+++.-.. .+-.... ..++. .++. .. ..+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~--~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl----~~---~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE----DT---KSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT----TB---SCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC--CCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC----CH---HHHHHHHHHH
Confidence 4699999999999999999887622 12223344332111 0000000 00000 0000 11 1234556666
Q ss_pred hcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHHH
Q 045012 262 LSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA 308 (576)
Q Consensus 262 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 308 (576)
+..++=+|++|...+ ......+.... ..|..|++||......
T Consensus 95 L~~~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 666777899999863 23333322221 2366788888776543
No 305
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.89 E-value=0.11 Score=55.98 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=32.2
Q ss_pred cccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 161 DGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 161 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+|.+.-++.+...+... ..+.|+|++|+||||||+.+..
T Consensus 44 ~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 78887777777776432 4789999999999999999987
No 306
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.88 E-value=0.24 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 307
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.85 E-value=0.09 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999986
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.79 E-value=0.084 Score=47.65 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+.|.|.|++|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999876
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.78 E-value=0.084 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999886
No 310
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.78 E-value=0.085 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.71 E-value=0.087 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999876
No 312
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.70 E-value=0.11 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999864
No 313
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.69 E-value=0.12 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|.|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999999875
No 314
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.68 E-value=0.23 Score=45.90 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
.....|.|.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998743
No 315
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.64 E-value=0.32 Score=50.40 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=49.5
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccch----hcccc-ceEEEEeCCCC-ChhHHHHHHHHhhhC-------CCCCCCC
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRV----QRHFE-IKAWTCVSEDF-DVSRVTQSILKSIAN-------DHSKNDD 249 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~ 249 (576)
.-.-++|.|.+|+|||+|| ..+.+.... ..+-+ ..+++-+++.. .+.++...+...=.. ...+.+.
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 4467899999999999995 566663221 01234 35667777654 345555555542110 1110111
Q ss_pred CHH--------HHHHHHHHhhcCCeEEEEEeCC
Q 045012 250 DLN--------LLQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 250 ~~~--------~l~~~l~~~l~~kr~LlVlDdv 274 (576)
... ...+.++. .++..||++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 111 12222333 589999999998
No 316
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.63 E-value=0.17 Score=47.94 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 167 KEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 167 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..-+..||... .++...+.++|++|+|||.+|..+++
T Consensus 90 ~~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 44466666432 13345799999999999999999987
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.62 E-value=0.086 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999886
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.61 E-value=0.095 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999886
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.53 E-value=0.11 Score=48.66 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998875
No 320
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.52 E-value=0.22 Score=48.14 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|+|+|.+|+|||||...+...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999864
No 321
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.48 E-value=0.1 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+..|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 322
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.48 E-value=0.11 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|.|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45577899999999999999998864
No 323
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.48 E-value=0.12 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+.+|+|+.|.|||||+..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998865
No 324
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.40 E-value=0.092 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988753
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.38 E-value=0.21 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34788999999999999887763
No 326
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.30 E-value=0.11 Score=45.45 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46889999999999999998764
No 327
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.28 E-value=1.4 Score=44.11 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=31.1
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 160 SDGKEKDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 160 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.+|......++...+.... .....+.|.|.+|+||+++|+.+...
T Consensus 131 ~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHh
Confidence 4677776666666554321 11234679999999999999998763
No 328
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.18 E-value=0.11 Score=45.31 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-|.|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 329
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.11 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 330
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.16 E-value=0.13 Score=45.71 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999864
No 331
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.15 E-value=0.11 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998864
No 332
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.12 E-value=0.1 Score=45.09 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-|.|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 333
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.10 E-value=0.099 Score=51.43 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999853
No 334
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.03 E-value=0.49 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=20.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLV 205 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v 205 (576)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999988
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.03 E-value=0.1 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.02 E-value=0.11 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998864
No 337
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.02 E-value=0.13 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 338
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.02 E-value=0.11 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 355789999999999999998864
No 339
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.98 E-value=0.31 Score=45.53 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhccc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
...|.|.|++|+||||+++.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.98 E-value=0.11 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.98 E-value=0.13 Score=49.77 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999875
No 342
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.96 E-value=0.12 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
++|.|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999998886
No 343
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.96 E-value=0.2 Score=51.17 Aligned_cols=89 Identities=12% Similarity=0.199 Sum_probs=49.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchh--------cccc-ceEEEEeCCCC-ChhHHHHHHHHh--hh-----CCCCCC
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQ--------RHFE-IKAWTCVSEDF-DVSRVTQSILKS--IA-----NDHSKN 247 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~-----~~~~~~ 247 (576)
-.-++|.|.+|+|||+|+.++.+..... ++-+ ..+++-+++.. .+.++..++... +. .... +
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~-d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA-D 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET-T
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC-C
Confidence 3567899999999999999998754331 1111 44556666443 345555554432 10 0011 1
Q ss_pred CCCHHHHH-----HHHHHhh---cCCeEEEEEeCC
Q 045012 248 DDDLNLLQ-----EKLKKQL---SGKKFLLVLDDV 274 (576)
Q Consensus 248 ~~~~~~l~-----~~l~~~l---~~kr~LlVlDdv 274 (576)
.+...... -.+.+++ .++.+||++||+
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 22222211 1233443 378999999998
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.95 E-value=0.11 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 345
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.94 E-value=0.27 Score=46.80 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=26.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
++|+|.|-||+||||+|..+.... ...-..++-+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCC
Confidence 578889999999999998887632 22222455565543
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.94 E-value=0.11 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999998875
No 347
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.93 E-value=0.1 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999998875
No 348
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.93 E-value=0.11 Score=44.99 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 349
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.92 E-value=0.18 Score=51.45 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=49.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhc-ccc-ceEEEEeCCCC-ChhHHHHHHHHh--hh-----CCCCCCCCCHHHH
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQR-HFE-IKAWTCVSEDF-DVSRVTQSILKS--IA-----NDHSKNDDDLNLL 254 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~-----~~~~~~~~~~~~l 254 (576)
-.-++|.|.+|+|||+|+.++.+...... +-+ ..+++-+++.. .+.+++.++... +. .... +.+.....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ats-d~p~~~r~ 229 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLA-NDPAIERI 229 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEET-TSCHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECC-CCCHHHHH
Confidence 34578999999999999999887533211 111 45566666443 455566655442 10 0011 11111111
Q ss_pred -----HHHHHHhh---cCCeEEEEEeCC
Q 045012 255 -----QEKLKKQL---SGKKFLLVLDDV 274 (576)
Q Consensus 255 -----~~~l~~~l---~~kr~LlVlDdv 274 (576)
.-.+.+++ .++.+||++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11233443 378999999998
No 350
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.87 E-value=0.12 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998874
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.87 E-value=0.11 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.84 E-value=0.13 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999886
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.82 E-value=0.11 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=20.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999888764
No 354
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.79 E-value=0.12 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998764
No 355
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.75 E-value=0.12 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.9
Q ss_pred EEEeecCcCcHHHHHHHHhcc
Q 045012 188 YSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~ 208 (576)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 356
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.74 E-value=0.12 Score=45.57 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999988764
No 357
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.67 E-value=0.12 Score=45.34 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 358
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.64 E-value=0.092 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.....|+|.|..|+||||+++.+..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988876
No 359
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.64 E-value=0.37 Score=44.19 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhccc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
..|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998743
No 360
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.63 E-value=0.15 Score=44.85 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34467899999999999999998864
No 361
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.63 E-value=0.25 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=19.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|.|+.|+||||+++.+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 362
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.60 E-value=0.12 Score=45.49 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999998764
No 363
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.58 E-value=0.11 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 364
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.56 E-value=0.093 Score=47.77 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....++|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34468999999999999999888753
No 365
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999888764
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.55 E-value=0.43 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.++.|.|++|+|||||+..++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999863
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.54 E-value=0.15 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999875
No 368
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.53 E-value=0.72 Score=48.15 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC-hhHHHHHH
Q 045012 169 EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD-VSRVTQSI 236 (576)
Q Consensus 169 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 236 (576)
+.++.|.. -..-.-++|.|..|+|||+|+.++.+. .+-+..+++-+++..+ ..+++.++
T Consensus 216 rvID~l~P-----igkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFP-----QAKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSC-----EETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCC-----cccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 45555543 234467899999999999999998763 2234677777776654 44444443
No 369
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.52 E-value=0.15 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-|+|+|.+|+|||||...+..+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998763
No 370
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.51 E-value=0.18 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999998764
No 371
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.51 E-value=0.15 Score=47.72 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=30.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQS 235 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 235 (576)
.-.++.|.|.+|+|||+||.+++.+. ....-..+++++.. .+...+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHH
Confidence 44789999999999999998876532 12222345555543 344444444
No 372
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.46 E-value=0.31 Score=46.94 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=26.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
++|+|.|-||+||||+|..+..... ..-..++-+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 6788899999999999988876322 2222345555543
No 373
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.44 E-value=0.19 Score=52.02 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=48.0
Q ss_pred CcEEEEeecCcCcHHHHH-HHHhcccchhccccc-eEEEEeCCCC-ChhHHHHHHHHhhhC-------CCCCCCCC----
Q 045012 185 LSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEDF-DVSRVTQSILKSIAN-------DHSKNDDD---- 250 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~~---- 250 (576)
-.-++|.|.+|+|||+|| ..+.+.. .-+. .+++-+++.. .+.++...+...=.. ...+.+..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 356789999999999995 5777642 2343 4666676554 344444444432110 01101111
Q ss_pred ----HHHHHHHHHHhhcCCeEEEEEeCC
Q 045012 251 ----LNLLQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 251 ----~~~l~~~l~~~l~~kr~LlVlDdv 274 (576)
.-...+.++. .++..||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122334444 589999999998
No 374
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.44 E-value=0.13 Score=46.09 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|+|+|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998863
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.35 E-value=0.13 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 376
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.34 E-value=0.26 Score=45.06 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=51.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCC-CCCCHHHHHHHHHHhh
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSK-NDDDLNLLQEKLKKQL 262 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l 262 (576)
...+..++|..|.||||.+.....+... ......++ .... +...-...+.+.++..... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~-k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVF-KPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEE-ECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEE-Eecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3478889999999999998777664322 22233333 2111 1111122344444332210 011111 222233
Q ss_pred cCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecch
Q 045012 263 SGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ 305 (576)
Q Consensus 263 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 305 (576)
.++--+|++|.+.--+.+..+.+ ..+.+ .|..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEeccc
Confidence 33334999999876543444333 33222 367899999853
No 377
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.34 E-value=0.16 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999875
No 378
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.32 E-value=0.2 Score=48.81 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=25.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHh
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVY 206 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 206 (576)
.+++|.+.+. -.+++|+|++|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 3666776663 2589999999999999999987
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.30 E-value=0.14 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998764
No 380
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.29 E-value=0.14 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=19.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 381
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.26 E-value=0.14 Score=46.05 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999998874
No 382
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.23 E-value=0.14 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 383
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.22 E-value=0.12 Score=46.58 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.5
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 445788999999999999999864
No 384
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.15 E-value=0.17 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346999999999999999998865
No 385
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.13 E-value=0.21 Score=51.32 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhcc--ccceEEEEeCCCC-ChhHHHHHHHHhhhC-------CCCCCCCCHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRH--FEIKAWTCVSEDF-DVSRVTQSILKSIAN-------DHSKNDDDLNL 253 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~~ 253 (576)
.-.-++|.|.+|+|||+|+.+++++...... =+..+++-+++.. ...+++.++...=.. ... +.+....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts-d~p~~~r 229 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA-DDPAVER 229 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET-TSCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC-CCCHHHH
Confidence 3456788999999999999999875433221 1245566666543 455666666543111 011 1111111
Q ss_pred H-----HHHHHHhh---cCCeEEEEEeCC
Q 045012 254 L-----QEKLKKQL---SGKKFLLVLDDV 274 (576)
Q Consensus 254 l-----~~~l~~~l---~~kr~LlVlDdv 274 (576)
. .-.+.+++ .++.+||++||+
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1 11223333 379999999997
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.10 E-value=0.14 Score=44.86 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998864
No 387
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.09 E-value=0.15 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998854
No 388
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.07 E-value=0.15 Score=45.84 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
......|.|+|.+|+|||||...+...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345678899999999999999999875
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.07 E-value=0.15 Score=45.17 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 390
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.05 E-value=0.15 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.9
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|+|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988754
No 391
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.03 E-value=1.2 Score=45.85 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=49.0
Q ss_pred CCcEEEEeecCcCcHHHHH-HHHhcccchhccccc-eEEEEeCCCC-ChhHHHHHHHHhhhCCC------CCCCCCHH--
Q 045012 184 GLSVYSIHGLGGVGKTTLA-QLVYNDDRVQRHFEI-KAWTCVSEDF-DVSRVTQSILKSIANDH------SKNDDDLN-- 252 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~-- 252 (576)
.-.-++|.|..|+|||+|+ ..+.+. .+-+. .+++-+++.. .+.++..++.+.=.... ..+.+...
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3457889999999999996 566662 22333 4677777654 34555555443211110 00111111
Q ss_pred -------HHHHHHHHhhcCCeEEEEEeCC
Q 045012 253 -------LLQEKLKKQLSGKKFLLVLDDV 274 (576)
Q Consensus 253 -------~l~~~l~~~l~~kr~LlVlDdv 274 (576)
...+.++. .++..||++||+
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 12233333 589999999998
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.01 E-value=0.18 Score=43.83 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|.|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998754
No 393
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.00 E-value=0.14 Score=45.50 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.00 E-value=0.14 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=19.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.--|.|+|.+|+|||||++.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34678999999999999976664
No 395
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.96 E-value=0.19 Score=46.57 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|+|+|.+|+|||||+..+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999864
No 396
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.87 E-value=0.15 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988864
No 397
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.84 E-value=0.37 Score=47.89 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 224 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 224 (576)
...+++.+.|-||+||||+|..+.........-..++-+...
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 456899999999999999998887632200222345555554
No 398
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.83 E-value=0.16 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999875
No 399
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.82 E-value=0.16 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 400
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.82 E-value=0.15 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998764
No 401
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.82 E-value=0.16 Score=44.96 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999998864
No 402
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.80 E-value=0.5 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....++|+|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998864
No 403
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.79 E-value=0.15 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.0
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.78 E-value=0.19 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999999999875
No 405
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.74 E-value=0.16 Score=45.90 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|.|+|.+|+|||||...+..+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998764
No 406
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.71 E-value=0.16 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999864
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.70 E-value=0.16 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998864
No 408
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.68 E-value=0.18 Score=51.35 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999986
No 409
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.67 E-value=0.19 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999875
No 410
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.17 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999764
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.62 E-value=0.19 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 36899999999999999999875
No 412
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.17 Score=45.99 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 413
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.62 E-value=0.17 Score=44.93 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678899999999999999998653
No 414
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.62 E-value=0.18 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=20.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|.|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999998864
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.60 E-value=0.2 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+..+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999998875
No 416
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.60 E-value=0.17 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998864
No 417
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.57 E-value=0.17 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999998764
No 418
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.56 E-value=0.17 Score=44.73 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999998753
No 419
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.56 E-value=0.17 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998753
No 420
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.54 E-value=0.19 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.54 E-value=0.17 Score=45.83 Aligned_cols=25 Identities=40% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4456889999999999999998764
No 422
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.53 E-value=0.4 Score=47.35 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=28.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCC
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSE 225 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 225 (576)
...+++.+.|-||+||||+|..+... ....-..++-+....
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~ 54 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDP 54 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCS
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCC
Confidence 34678889999999999999888763 223333455565543
No 423
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.52 E-value=0.16 Score=49.68 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.++...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999998864
No 424
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.50 E-value=0.16 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEeecCcCcHHHHHHHHhc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999775
No 425
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.47 E-value=0.17 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999998864
No 426
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.47 E-value=0.17 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|+|+|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456889999999999999998864
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.45 E-value=0.18 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.44 E-value=0.17 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.43 E-value=0.18 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.39 E-value=0.18 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 431
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.39 E-value=0.17 Score=46.57 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.2
Q ss_pred EEEEeecCcCcHHHHHHHHhcc
Q 045012 187 VYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 187 vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
-|.|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999988764
No 432
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.38 E-value=0.18 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=19.9
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999999874
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.37 E-value=0.21 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999874
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.35 E-value=0.2 Score=44.79 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.0
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+..+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.35 E-value=0.18 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998864
No 436
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.34 E-value=0.18 Score=46.35 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhccc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 445678999999999999999998753
No 437
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.34 E-value=0.19 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999864
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.33 E-value=0.18 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=20.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 439
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.33 E-value=0.18 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 440
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.31 E-value=0.17 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 36899999999999999999875
No 441
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.27 E-value=0.22 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=20.4
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...--|.|+|.+|+|||||.+.+.+.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 34456889999999999999877663
No 442
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.26 E-value=0.18 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..--|.|+|.+|+|||||...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 443
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.24 E-value=0.49 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+++.|.|.+|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999887765
No 444
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.22 E-value=0.19 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 36899999999999999999875
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.22 E-value=0.19 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456889999999999999998764
No 446
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.19 E-value=1.4 Score=46.18 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCC-ChhHHHHH
Q 045012 169 EIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDF-DVSRVTQS 235 (576)
Q Consensus 169 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 235 (576)
+.++.|.. -.+-.-++|.|..|+|||+|+.++.+.. +-+..+++-+++.. ...+++.+
T Consensus 221 rvID~l~P-----igrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFP-----VTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSC-----CBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCC-----ccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 45565643 2345678999999999999999998732 23456777776553 33344443
No 447
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.17 E-value=0.18 Score=45.02 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 448
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.16 E-value=0.2 Score=50.32 Aligned_cols=106 Identities=10% Similarity=0.133 Sum_probs=55.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcccchhccccceE-EEEeCCCCChhHHHHH---HHHh--hhCCCCCCCCCHHHHHHH
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKA-WTCVSEDFDVSRVTQS---ILKS--IANDHSKNDDDLNLLQEK 257 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~---il~~--l~~~~~~~~~~~~~l~~~ 257 (576)
...+++|+|+.|+|||||++.+..-. .......+ ++. ++.... ... ++.+ ++. .. ..+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~--~~~~~g~I~~~e--~~~e~~--~~~~~~~v~Q~~~g~----~~---~~~~~~ 201 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIE--DPIEYV--FKHKKSIVNQREVGE----DT---KSFADA 201 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH--HHHSCCEEEEEE--SSCCSC--CCCSSSEEEEEEBTT----TB---SCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc--CcCCCcEEEEec--ccHhhh--hccCceEEEeeecCC----CH---HHHHHH
Confidence 34689999999999999999987632 11112333 222 111100 000 0000 000 11 122456
Q ss_pred HHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH
Q 045012 258 LKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV 307 (576)
Q Consensus 258 l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 307 (576)
++..+...+-+|++|.+.+. +......... ..|..|+.|+....+
T Consensus 202 l~~~L~~~pd~illdE~~d~--e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HHHHTTSCCSEEEESCCCSH--HHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HHHHhhhCcCEEEECCCCCH--HHHHHHHHHH---hcCCEEEEEECcchH
Confidence 67777777889999999642 3333322222 235567777776543
No 449
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.15 E-value=0.18 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...++|+|+.|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999998875
No 450
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.10 E-value=0.4 Score=46.75 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999999764
No 451
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.10 E-value=0.16 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
-.+++|+|+.|.|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999874
No 452
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.07 E-value=0.69 Score=47.24 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 182 DNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 182 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
....++..|.|.+|.||||+....++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45778999999999999999988875
No 453
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.07 E-value=0.19 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998754
No 454
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.07 E-value=0.18 Score=45.17 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=19.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+..+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998864
No 455
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.05 E-value=0.2 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.03 E-value=0.2 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|+|+|.+|+|||||...+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998864
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.03 E-value=0.23 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
+-+.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999988875
No 458
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.01 E-value=0.2 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998864
No 459
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.97 E-value=0.19 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|+|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467889999999999999998764
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.95 E-value=0.2 Score=44.74 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 461
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.94 E-value=0.18 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.4
Q ss_pred CcEEEEeecCcCcHHHHHHHHhccc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDD 209 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~ 209 (576)
.--|+|+|.+|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988753
No 462
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.86 E-value=0.21 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|++|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 5899999999999999999886
No 463
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.84 E-value=0.33 Score=47.21 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=26.6
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.++++...+. -.+++|+|++|+|||||.+.+..
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhcc
Confidence 3666776663 25899999999999999999876
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.83 E-value=0.28 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.4
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999853
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.82 E-value=0.2 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.++|.|++|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988763
No 466
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.74 E-value=0.21 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.3
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-.+++|+|+.|+|||||.+.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999874
No 467
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.74 E-value=0.26 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..|+|+|.+|+|||||...+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999864
No 468
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.72 E-value=0.27 Score=42.27 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+.+|+|+.|.||||+..+++.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999988864
No 469
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.70 E-value=0.21 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|+.|.|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 470
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.69 E-value=0.83 Score=42.56 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred EEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhC---C-C-------CC----CCCCHH
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIAN---D-H-------SK----NDDDLN 252 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~---~-~-------~~----~~~~~~ 252 (576)
+.|+|+.|.|||.+|..+.... . ..++++. . ...+..++.+.+.. . . .. ...+.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7899999999999998777532 1 2233332 2 22333333333221 1 0 00 001223
Q ss_pred HHHHHHHHhhcCCeEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEe
Q 045012 253 LLQEKLKKQLSGKKFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTH 302 (576)
Q Consensus 253 ~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt 302 (576)
.+..... .+.++--+||+|.++......+..+...+. ...++++|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 333445699999998765556666655443 233444444
No 471
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.67 E-value=0.26 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.-.+++|+|+.|.|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346899999999999999999875
No 472
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.63 E-value=0.38 Score=44.98 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=26.1
Q ss_pred EEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCC
Q 045012 188 YSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFD 228 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 228 (576)
|+|.|-||+||||+|..+..... ..-..++-+......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA--SDYDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT--TTCSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCcC
Confidence 56699999999999988876332 2223455666554443
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.63 E-value=0.22 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|+|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356789999999999999888764
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.63 E-value=0.22 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.5
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||+..+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.62 E-value=0.22 Score=44.53 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
--|.|+|.+|+|||||...+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 476
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.61 E-value=0.3 Score=44.22 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+..+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 4568999999999999999988765
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.60 E-value=0.22 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-|+|+|.+|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999998864
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.59 E-value=0.22 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 479
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.54 E-value=0.91 Score=50.32 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhc
Q 045012 165 KDKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 165 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+.+...+... .++.|+|+.|.||||++..+..
T Consensus 97 ~q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 97 AQRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHHH
Confidence 3456677777542 5799999999999996655543
No 480
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.53 E-value=0.39 Score=43.36 Aligned_cols=39 Identities=26% Similarity=0.070 Sum_probs=25.9
Q ss_pred cEEEEe-ecCcCcHHHHHHHHhcccchhccccceEEEEeCCC
Q 045012 186 SVYSIH-GLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSED 226 (576)
Q Consensus 186 ~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 226 (576)
++|+|+ +-||+||||+|..+.... ...-..++.+.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQ 41 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 577777 679999999998887632 222234555665433
No 481
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.51 E-value=0.23 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998764
No 482
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.34 E-value=0.43 Score=47.96 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCCCcEEEEee-cCcCcHHHHHHHHhcccchhccccceEEEEeC
Q 045012 182 DNGLSVYSIHG-LGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVS 224 (576)
Q Consensus 182 ~~~~~vv~I~G-~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 224 (576)
..+.++|+|+| -||+||||+|..+... ....-..++.+...
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 35678898885 8999999999888763 22222346666655
No 483
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.34 E-value=0.23 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.9
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999998854
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.33 E-value=0.14 Score=45.24 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=10.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.33 E-value=0.24 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.2
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.-|+|+|.+|+|||||...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998864
No 486
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.29 E-value=0.28 Score=46.46 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=21.7
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998764
No 487
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.23 E-value=0.22 Score=49.13 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=55.6
Q ss_pred cEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHHHhhhCCCCCCCCCHHHHHHHHHHhhcCC
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSILKSIANDHSKNDDDLNLLQEKLKKQLSGK 265 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k 265 (576)
.+++|+|+.|.|||||++.+..-.. .-...+.+.-......... . +.+.... . .-......+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~--g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF--G--GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC--B--TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe--C--CChhHHHHHHHHhhhC
Confidence 5899999999999999999886321 1234454442221111000 0 0000000 0 1112334566677778
Q ss_pred eEEEEEeCCCCCChhhhhhhccCCCCCCCCceEEEEecchHH
Q 045012 266 KFLLVLDDVWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV 307 (576)
Q Consensus 266 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 307 (576)
+-+|++|.+... +.++.+ ..+..+ +..+|+||.....
T Consensus 241 p~ilildE~~~~--e~~~~l-~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 241 PDRIILGELRSS--EAYDFY-NVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp CSEEEECCCCST--HHHHHH-HHHHTT--CCCEEEEEECSSH
T ss_pred CCEEEEcCCChH--HHHHHH-HHHhcC--CCEEEEEEcccHH
Confidence 889999998653 334333 233222 2236777765443
No 488
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.20 E-value=0.24 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999863
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.18 E-value=0.36 Score=43.99 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred cEEEEeecCcCcHHHHHHHHhcc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+.|+|-|..|+||||+++.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47889999999999999998874
No 490
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.09 E-value=0.52 Score=51.21 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcCCCCCCCCCcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCChhHHHHHHH
Q 045012 166 DKEEIVELLLRDDLRPDNGLSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDVSRVTQSIL 237 (576)
Q Consensus 166 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 237 (576)
..+.+...|.. ..+..|+||||.|||+.+.++... -+.. ...+.++...+..+.+++..+.
T Consensus 194 Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~-l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQ-AVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHH-HHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 44555555632 247789999999999866554432 1222 2356777666655666665554
No 491
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.09 E-value=0.67 Score=45.51 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=27.8
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcccchhccccceEEEEeCCCCCh
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYNDDRVQRHFEIKAWTCVSEDFDV 229 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 229 (576)
..++...|-||+||||+|..+... ....-..++-++.....+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~--lA~~G~rVLlvD~D~~~~l 56 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALW--MARSGKKTLVISTDPAHSL 56 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEECCSSCCH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHH--HHHCCCcEEEEeCCCCcCH
Confidence 467777899999999999888763 2233334555555443333
No 492
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.01 E-value=0.25 Score=50.36 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEeecCcCcHHHHHHHHhc
Q 045012 188 YSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 188 v~I~G~gGiGKTtLa~~v~~ 207 (576)
++|+|+.|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999876
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.01 E-value=0.24 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 494
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.96 E-value=0.21 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.1
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
..--|.|+|.+|+|||||...+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998653
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.95 E-value=0.28 Score=52.55 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...+|.|.|++|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.94 E-value=0.46 Score=50.61 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCcCcHHHHHHHHhcc
Q 045012 183 NGLSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 183 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
+...+|.|.|++|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999873
No 497
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.89 E-value=0.26 Score=45.02 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.6
Q ss_pred CcEEEEeecCcCcHHHHHHHHhcc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYND 208 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~~ 208 (576)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998864
No 498
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.80 E-value=0.22 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcEEEEeecCcCcHHHHHHHHhc
Q 045012 184 GLSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 184 ~~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
...++.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999987
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.69 E-value=0.17 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.3
Q ss_pred cEEEEeecCcCcHHHHHHHHhc
Q 045012 186 SVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 186 ~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
.+++|+|++|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 5899999999999999998875
No 500
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.66 E-value=0.31 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=21.2
Q ss_pred CcEEEEeecCcCcHHHHHHHHhc
Q 045012 185 LSVYSIHGLGGVGKTTLAQLVYN 207 (576)
Q Consensus 185 ~~vv~I~G~gGiGKTtLa~~v~~ 207 (576)
..+|.|.|+.|+||||+++.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
Done!