Query 045016
Match_columns 204
No_of_seqs 114 out of 1085
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 1E-47 3.5E-52 300.2 15.2 197 1-199 94-295 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 7.1E-48 2.4E-52 294.7 13.8 196 1-198 35-235 (262)
3 1aua_A Phosphatidylinositol tr 100.0 2E-46 6.9E-51 291.2 15.7 200 1-201 54-270 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 1.6E-46 5.4E-51 293.5 12.1 201 1-202 63-286 (320)
5 1olm_A SEC14-like protein 2; l 100.0 2.1E-45 7.3E-50 296.5 15.2 197 1-199 37-248 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.6 4.1E-16 1.4E-20 117.6 7.1 137 43-188 6-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.5 5.3E-14 1.8E-18 107.6 6.6 132 47-187 29-162 (290)
8 2dah_A Ubiquilin-3; UBA domain 77.1 2.6 8.8E-05 23.1 3.0 21 3-23 28-48 (54)
9 2q3l_A Uncharacterized protein 77.0 12 0.00041 24.3 6.8 84 74-163 29-112 (126)
10 1z96_A DNA-damage, UBA-domain 75.9 2.6 9E-05 21.1 2.7 18 3-20 22-39 (40)
11 2bwb_A Ubiquitin-like protein 74.1 2.7 9.4E-05 22.1 2.5 19 3-21 26-44 (46)
12 2dna_A Unnamed protein product 73.5 3.5 0.00012 23.7 3.0 21 3-23 38-58 (67)
13 1wr1_B Ubiquitin-like protein 73.3 2.7 9.3E-05 23.4 2.5 20 3-22 36-55 (58)
14 2knz_A Ubiquilin-4; cytoplasm, 71.6 2.8 9.5E-05 22.8 2.2 20 3-22 30-49 (53)
15 1q02_A Sequestosome 1; helical 70.8 4.5 0.00015 21.8 2.8 20 2-21 29-48 (52)
16 3e21_A HFAF1, FAS-associated f 70.8 2.6 9E-05 22.2 1.9 17 3-19 25-41 (45)
17 1v92_A NSFL1 cofactor P47; 3-h 68.5 2.9 9.9E-05 21.8 1.8 18 3-20 24-41 (46)
18 2cp8_A NEXT to BRCA1 gene 1 pr 67.6 5.6 0.00019 21.8 2.8 21 3-23 28-48 (54)
19 1wgl_A TOLL-interacting protei 66.1 5.7 0.0002 22.2 2.8 21 2-22 28-48 (59)
20 1ify_A HHR23A, UV excision rep 65.2 3.5 0.00012 22.0 1.7 19 4-22 27-45 (49)
21 1wji_A Tudor domain containing 64.8 6 0.0002 22.4 2.8 20 4-23 28-47 (63)
22 1vej_A Riken cDNA 4931431F19; 62.7 6.4 0.00022 23.1 2.7 20 3-22 48-67 (74)
23 2g3q_A Protein YBL047C; endocy 62.2 5.2 0.00018 20.5 2.0 18 4-21 23-40 (43)
24 2dal_A Protein KIAA0794; FAS a 61.8 5.9 0.0002 22.3 2.4 18 3-20 34-51 (62)
25 2jy5_A Ubiquilin-1; UBA, alter 61.7 6.8 0.00023 21.2 2.5 19 3-21 31-49 (52)
26 2dam_A ETEA protein; KIAA0887, 61.4 6.4 0.00022 22.6 2.5 19 3-21 38-56 (67)
27 1otr_A Protein CUE2; protein-p 58.1 8.7 0.0003 20.5 2.5 21 3-23 24-44 (49)
28 2dhy_A CUE domain-containing p 56.6 12 0.00042 21.4 3.1 22 2-23 37-58 (67)
29 1veg_A NEDD8 ultimate buster-1 55.3 11 0.00036 22.7 2.8 21 3-23 47-67 (83)
30 2dak_A Ubiquitin carboxyl-term 53.9 9.5 0.00032 21.4 2.3 21 4-24 28-48 (63)
31 1vg5_A RSGI RUH-014, rhomboid 53.2 8.3 0.00028 22.6 2.0 19 4-22 48-66 (73)
32 2dzl_A Protein FAM100B; UBA-li 52.6 11 0.00036 21.6 2.4 18 3-20 36-53 (66)
33 2cp9_A EF-TS, EF-TSMT, elongat 52.6 11 0.00037 21.5 2.4 20 5-24 30-49 (64)
34 1wiv_A UBP14, ubiquitin-specif 52.5 8.6 0.00029 22.4 2.1 19 4-22 48-66 (73)
35 2d9s_A CBL E3 ubiquitin protei 43.6 34 0.0012 18.5 3.3 21 3-23 27-47 (53)
36 3sbx_A Putative uncharacterize 43.4 35 0.0012 24.0 4.4 64 117-185 121-189 (189)
37 1wgn_A UBAP1, ubiquitin associ 41.2 31 0.0011 19.4 3.0 20 3-22 37-56 (63)
38 1whc_A RSGI RUH-027, UBA/UBX 3 40.9 23 0.00078 19.9 2.6 20 4-23 28-48 (64)
39 2dai_A Ubadc1, ubiquitin assoc 39.9 20 0.00069 21.5 2.3 20 4-23 48-67 (83)
40 2ooa_A E3 ubiquitin-protein li 39.2 45 0.0015 18.0 3.3 21 3-23 29-49 (52)
41 1sbo_A Putative anti-sigma fac 38.8 63 0.0022 19.4 6.3 51 103-156 46-96 (110)
42 1j3a_A 50S ribosomal protein L 38.6 50 0.0017 22.0 4.3 70 99-173 24-103 (142)
43 2di0_A Activating signal coint 38.2 20 0.0007 20.8 2.1 21 2-22 32-52 (71)
44 1vq8_J 50S ribosomal protein L 37.5 54 0.0018 21.9 4.3 70 99-173 32-107 (145)
45 2ka5_A Putative anti-sigma fac 37.1 78 0.0027 20.0 6.3 52 102-156 53-104 (125)
46 1wj7_A Hypothetical protein (R 36.3 19 0.00065 22.6 1.9 20 4-23 59-78 (104)
47 3llo_A Prestin; STAS domain, c 35.4 89 0.003 20.1 6.4 52 102-156 65-116 (143)
48 3qua_A Putative uncharacterize 34.9 50 0.0017 23.3 4.1 64 117-185 130-198 (199)
49 3mvn_A UDP-N-acetylmuramate:L- 34.2 77 0.0026 21.2 4.9 35 100-142 35-69 (163)
50 2cpw_A CBL-interacting protein 34.0 17 0.00059 20.5 1.3 18 4-21 38-56 (64)
51 4dgh_A Sulfate permease family 33.4 92 0.0031 19.7 6.4 51 102-155 50-100 (130)
52 2k44_A Hsapbk, K+-channel volt 32.9 4 0.00014 18.8 -1.2 6 3-8 15-20 (28)
53 3ny7_A YCHM protein, sulfate t 32.7 91 0.0031 19.4 5.2 51 102-156 47-97 (118)
54 3ct6_A PTS-dependent dihydroxy 32.6 1E+02 0.0035 20.0 5.8 42 99-153 58-99 (131)
55 1umq_A Photosynthetic apparatu 32.4 40 0.0014 20.0 2.8 19 2-20 46-64 (81)
56 1th8_B Anti-sigma F factor ant 32.0 68 0.0023 19.6 4.2 51 103-156 45-95 (116)
57 3kdg_A DNA mismatch repair pro 31.3 1.3E+02 0.0045 20.9 6.0 54 12-65 129-183 (197)
58 1oai_A Nuclear RNA export fact 31.1 54 0.0019 18.1 3.0 23 3-25 26-48 (59)
59 3e7l_A Transcriptional regulat 31.0 46 0.0016 18.3 2.8 19 2-20 24-42 (63)
60 3cpt_A Mitogen-activated prote 30.9 1.2E+02 0.0041 20.2 5.5 56 38-94 21-82 (143)
61 4hyl_A Stage II sporulation pr 30.6 96 0.0033 19.0 5.4 51 103-156 44-94 (117)
62 2ekk_A UBA domain from E3 ubiq 30.5 23 0.00077 18.4 1.3 15 6-21 30-44 (47)
63 4dgf_A Sulfate transporter sul 30.5 1.1E+02 0.0037 19.6 6.3 52 101-155 52-103 (135)
64 1zv1_A Doublesex protein; UBA 30.4 48 0.0016 18.6 2.6 21 5-25 33-53 (65)
65 2dkl_A Trinucleotide repeat co 30.2 26 0.00089 21.1 1.7 19 4-22 40-58 (85)
66 1jvr_A HTLV-II MA, MA, human T 30.1 28 0.00094 22.3 1.8 14 127-140 72-85 (137)
67 3bed_A PTS system, IIA compone 29.3 1.1E+02 0.0038 20.0 4.9 41 100-152 62-105 (142)
68 4a17_I RPL13A, 60S ribosomal p 29.2 82 0.0028 22.3 4.3 69 99-173 28-107 (198)
69 2dag_A Ubiquitin carboxyl-term 28.8 45 0.0015 19.3 2.6 20 4-23 28-48 (74)
70 4hb7_A Dihydropteroate synthas 28.5 1.8E+02 0.0062 21.6 6.5 75 58-136 124-201 (270)
71 4b6a_O 60S ribosomal protein L 26.8 31 0.0011 24.5 1.9 69 100-173 30-108 (199)
72 1ufz_A Hypothetical protein BA 23.9 87 0.003 18.7 3.1 21 3-23 55-75 (83)
73 1o9a_B FNBB, fibronectin bindi 23.0 32 0.0011 16.2 0.9 18 186-203 2-19 (36)
74 1dv0_A DNA repair protein HHR2 22.9 49 0.0017 17.2 1.8 18 3-20 22-39 (47)
75 1h4x_A SPOIIAA, anti-sigma F f 22.8 98 0.0034 18.9 3.6 51 103-156 44-94 (117)
76 1hp8_A HU-P8; leukemia, cystei 22.0 1.2E+02 0.004 17.4 3.3 26 5-30 17-42 (68)
77 2kln_A Probable sulphate-trans 21.8 1.6E+02 0.0054 18.5 5.9 51 101-155 48-99 (130)
78 3iz5_K 60S ribosomal protein L 21.2 1.1E+02 0.0037 21.8 3.8 70 100-173 35-113 (206)
79 2zkr_j 60S ribosomal protein L 21.1 1.1E+02 0.0037 21.7 3.7 25 148-172 77-107 (203)
80 2jp7_A MRNA export factor MEX6 20.6 77 0.0026 17.3 2.3 19 4-22 26-44 (57)
81 2jz1_A Protein doublesex; sex 20.4 89 0.0031 18.3 2.6 28 5-32 33-64 (80)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1e-47 Score=300.20 Aligned_cols=197 Identities=22% Similarity=0.425 Sum_probs=177.1
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccC-CCCCChhhHHHHHhhCcc-eeeCCCCCCCcEEEEecCCCCCCCCCHH
Q 045016 1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVP-NGLISESEIQNHLAKNIL-NMQGFDKKGRPILVAFASRHKPSDGTLE 78 (204)
Q Consensus 1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l~~~~~-~~~g~d~~g~pV~~~~~~~~~~~~~~~~ 78 (204)
+|+|||||++||+++|.++|+++++||+++.. -..++++++...+..|.. +++|+|++||||++++++.+++...+.+
T Consensus 94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~ 173 (316)
T 3hx3_A 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFD 173 (316)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHH
Confidence 58999999999999999999999999999642 012566777777888875 5789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016 79 DFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV 155 (204)
Q Consensus 79 ~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~ 155 (204)
++++++++++|.++...+.++.|+++|+|++|++++|+ +++.+++++.+++++||++++++||||+|+++.++|+++
T Consensus 174 ~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~iv 253 (316)
T 3hx3_A 174 EILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVV 253 (316)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHH
Confidence 99999999999887654456689999999999999874 788999999999999999999999999999999999999
Q ss_pred ccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016 156 YPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV 199 (204)
Q Consensus 156 k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~ 199 (204)
++|+++++++||+++++ + .++|.++||+++||++|||++++.
T Consensus 254 kpfl~~kt~~KI~~~~~-~-~~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 254 KPFLKSKLLERVFVHGD-D-LSGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp GGGCCHHHHTTEEEEET-C-CHHHHHHSCGGGSBGGGTSSBCCC
T ss_pred HHhCCHHhhhheEEeCC-C-HHHHHhhCCHhhCcHhhCCCCCCc
Confidence 99999999999999975 3 379999999999999999999843
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=7.1e-48 Score=294.72 Aligned_cols=196 Identities=25% Similarity=0.419 Sum_probs=175.4
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccC-CCCCChhhHHHHHhhCcc-eeeCCCCCCCcEEEEecCCCCCCCCCHH
Q 045016 1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVP-NGLISESEIQNHLAKNIL-NMQGFDKKGRPILVAFASRHKPSDGTLE 78 (204)
Q Consensus 1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l~~~~~-~~~g~d~~g~pV~~~~~~~~~~~~~~~~ 78 (204)
+|+|||||++||+++|.++|+++++||+++.. ...+.++++.+.+..|.. +++|+|++||||++++++.+++...+.+
T Consensus 35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~ 114 (262)
T 1r5l_A 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAY 114 (262)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHH
Confidence 58999999999999999999999999999631 112456677777788764 6889999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016 79 DFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV 155 (204)
Q Consensus 79 ~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~ 155 (204)
++.++.++++|.++...+.+..|+++|+|++|++++|+ +++.++.++++++++||++++++||||+|++++++|+++
T Consensus 115 ~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~v 194 (262)
T 1r5l_A 115 DVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 194 (262)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHH
Confidence 99999999999877654445689999999999999986 578999999999999999999999999999999999999
Q ss_pred ccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCC
Q 045016 156 YPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPL 198 (204)
Q Consensus 156 k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~ 198 (204)
+||++++|++||+++++ ++.++|.++|| ++||++|||+++.
T Consensus 195 kpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 195 KPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp GGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred HHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCC
Confidence 99999999999999975 66789999999 9999999999874
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=2e-46 Score=291.21 Aligned_cols=200 Identities=27% Similarity=0.412 Sum_probs=171.6
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhh--HHHHHhh-CcceeeCCCCCCCcEEEEecCCCCCCC---
Q 045016 1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESE--IQNHLAK-NILNMQGFDKKGRPILVAFASRHKPSD--- 74 (204)
Q Consensus 1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~--~~~~l~~-~~~~~~g~d~~g~pV~~~~~~~~~~~~--- 74 (204)
+|+|||||++||+++|.++|+++++||++++++......+ ..+.+.. ...+++|+|++||||++++++.+++..
T Consensus 54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~ 133 (296)
T 1aua_A 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNK 133 (296)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhc
Confidence 5899999999999999999999999999987755322111 1233333 334789999999999999999988543
Q ss_pred -CCHHHHHHHHHHHHHHHHHhC--------CCCCceEEEEEeCCCCCCCCcc--HHHHHHHHHHHhhchhccccceEEEe
Q 045016 75 -GTLEDFKRFVVYCLDKICAKM--------PKGHEKFVYIGDLQGWGYSCSD--IRAYLACLSILQDCFPERLGKLYIVH 143 (204)
Q Consensus 75 -~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~iiD~~g~~~~~~~--~~~~~~~~~~~~~~yP~~l~~i~ivn 143 (204)
.+.+++++++++.+|.+++.. ..+++++++|+|++|++++|++ .+.++.++++++++||+|++++||||
T Consensus 134 ~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN 213 (296)
T 1aua_A 134 VTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIIN 213 (296)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEEC
Confidence 588999999999999876532 2347899999999999999986 67889999999999999999999999
Q ss_pred CChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCccC
Q 045016 144 APKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPI 201 (204)
Q Consensus 144 ~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~~~ 201 (204)
+|++++++|+++|+||+++|++||+++++ ++.++|.++|++++||++|||++++...
T Consensus 214 ~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~~ 270 (296)
T 1aua_A 214 APFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDES 270 (296)
T ss_dssp CCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCGG
T ss_pred chHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCCC
Confidence 99999999999999999999999999986 5678999999999999999999987653
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.6e-46 Score=293.50 Aligned_cols=201 Identities=29% Similarity=0.409 Sum_probs=171.9
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhH--------HHHH-hhCcceeeCCCCCCCcEEEEecCCCC
Q 045016 1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEI--------QNHL-AKNILNMQGFDKKGRPILVAFASRHK 71 (204)
Q Consensus 1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~--------~~~l-~~~~~~~~g~d~~g~pV~~~~~~~~~ 71 (204)
+|+|||||++|||++|.++|+++++||+++++|......+. .+.+ +.+..+++|+|++||||++++++.++
T Consensus 63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d 142 (320)
T 3q8g_A 63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGIN 142 (320)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccC
Confidence 58999999999999999999999999999887654322111 1222 33556889999999999999999998
Q ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC--------CCCCceEEEEEeCCCCCCCCcc--HHHHHHHHHHHhhchhcccc
Q 045016 72 PSD----GTLEDFKRFVVYCLDKICAKM--------PKGHEKFVYIGDLQGWGYSCSD--IRAYLACLSILQDCFPERLG 137 (204)
Q Consensus 72 ~~~----~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~iiD~~g~~~~~~~--~~~~~~~~~~~~~~yP~~l~ 137 (204)
+.. .+.+++++++++.+|.+++.. ...++++++|+|++|++++++. .+.++.++.+++++||+|++
T Consensus 143 ~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~ 222 (320)
T 3q8g_A 143 LKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMG 222 (320)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhc
Confidence 754 478899999999999876421 2245789999999999999875 67889999999999999999
Q ss_pred ceEEEeCChhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCccCC
Q 045016 138 KLYIVHAPKLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLVPIQ 202 (204)
Q Consensus 138 ~i~ivn~p~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~~~~ 202 (204)
++||||+|++++++|+++++||++++++||+++++ ++.++|.++|++++||++|||++++.+.+
T Consensus 223 ~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~~~ 286 (320)
T 3q8g_A 223 KFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIENLPVKYGGTSVLHNPN 286 (320)
T ss_dssp EEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGGGSBGGGTSCBCCSSTT
T ss_pred eEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChhhCChhhCCCCCCCCCC
Confidence 99999999999999999999999999999999985 56689999999999999999999986543
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.1e-45 Score=296.47 Aligned_cols=197 Identities=27% Similarity=0.473 Sum_probs=171.1
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHHHhHhhhccCCCCCChhhHHHHHhh-CcceeeCCCCCCCcEEEEecCCCCCC----CC
Q 045016 1 MIRRFLRARDLDIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAK-NILNMQGFDKKGRPILVAFASRHKPS----DG 75 (204)
Q Consensus 1 ~LlrfL~~~~~~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~-~~~~~~g~d~~g~pV~~~~~~~~~~~----~~ 75 (204)
+|+|||||++||+++|.++|+++++||++++++.... ....+.+.. ...+++|+|++||||++++++.+++. ..
T Consensus 37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~ 115 (403)
T 1olm_A 37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSA 115 (403)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccC
Confidence 5899999999999999999999999999987765322 111112221 23457899999999999999999875 47
Q ss_pred CHHHHHHHHHHHHHHHHHhCC-------CCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhccccceEEEeCC
Q 045016 76 TLEDFKRFVVYCLDKICAKMP-------KGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPERLGKLYIVHAP 145 (204)
Q Consensus 76 ~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~~l~~i~ivn~p 145 (204)
+.+++++++++++|.+++.+. .+..|+++|+|++|++++++ .++.++.++++++++||+|++++||||+|
T Consensus 116 ~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P 195 (403)
T 1olm_A 116 SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCC
Confidence 899999999999999888653 24689999999999999997 46788999999999999999999999999
Q ss_pred hhHHHHHHHhccCCCccccceEEEEcCCcchHHHhhcCCCCCCccccCCCCCCc
Q 045016 146 KLFMTVWKVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQLPDIYGGKLPLV 199 (204)
Q Consensus 146 ~~~~~~~~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~lP~~~GG~~~~~ 199 (204)
+++.++|+++||||++++++||+++++ ++.++|.++|++++||++|||++++.
T Consensus 196 ~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 196 KLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDP 248 (403)
T ss_dssp TTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSBCCT
T ss_pred HHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCcCCC
Confidence 999999999999999999999999986 66789999999999999999999864
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.63 E-value=4.1e-16 Score=117.57 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=113.3
Q ss_pred HHHhhCcceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc-cHHHH
Q 045016 43 NHLAKNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIRAY 121 (204)
Q Consensus 43 ~~l~~~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~-~~~~~ 121 (204)
+.-+.+.+|..|.|++|+||+++..++++.+..+.+.++.+++..++..+ ...+++|+|++|.+..+. +.+++
T Consensus 6 ~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p~~~wl 79 (256)
T 3pg7_A 6 ALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFL 79 (256)
T ss_dssp THHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHH
T ss_pred HHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCCcHHHH
Confidence 33456788888999999999999999999888888877777766666433 267999999999988765 68899
Q ss_pred HHHHHHHhhchhccccceEEEeCChhHHHHHHH-hccCCCccccceEEEEcCCcchHHHhhcCCCCCC
Q 045016 122 LACLSILQDCFPERLGKLYIVHAPKLFMTVWKV-VYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQL 188 (204)
Q Consensus 122 ~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~-~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~l 188 (204)
+.+.+++...|...++++||+|++++++..++. .+++.+.+..+|++++++. ++|.++|+.++|
T Consensus 80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl---~eL~~~i~~~~L 144 (256)
T 3pg7_A 80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQQ 144 (256)
T ss_dssp HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST---TGGGGTSCGGGC
T ss_pred HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH---HHHHhhcCHHHc
Confidence 999999999999999999999999999876655 4555666788899999874 899999987654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=107.58 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=102.0
Q ss_pred hCcceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc-cHHHHHHHH
Q 045016 47 KNILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS-DIRAYLACL 125 (204)
Q Consensus 47 ~~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~-~~~~~~~~~ 125 (204)
.+.++..|.|++|+||+++.+++++....+.+.++.+++..++..+ ...+++|+|+++.+..+- +.++++.+.
T Consensus 29 ~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n~p~~~~l~~~~ 102 (290)
T 3peg_A 29 LSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFLSKWF 102 (290)
T ss_dssp TTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHHGGGG
T ss_pred CCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccCCChHHHHHHHH
Confidence 3556666899999999999999999888888877666666666433 268999999999998764 688999999
Q ss_pred HHHhhchhccccceEEEeCChhHHHHH-HHhccCCCccccceEEEEcCCcchHHHhhcCCCCC
Q 045016 126 SILQDCFPERLGKLYIVHAPKLFMTVW-KVVYPFIDDNTKKKIVFVENKNLTSTLLDEIDKSQ 187 (204)
Q Consensus 126 ~~~~~~yP~~l~~i~ivn~p~~~~~~~-~~~k~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~ 187 (204)
+++...|+.+++++||+|++.++...+ ...+++.+.+..+|+.++++. .+|..++++++
T Consensus 103 ~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~---~~L~~~i~~~~ 162 (290)
T 3peg_A 103 VVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEHEQ 162 (290)
T ss_dssp TSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS---CC---------
T ss_pred HHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH---HHHHhhCCHHH
Confidence 999999999999999999999988754 566777777888999998775 56888887763
No 8
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=77.13 E-value=2.6 Score=23.13 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
++-|+++++|+++|.+.|..+
T Consensus 28 ~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 28 LQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 467899999999999988764
No 9
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=76.97 E-value=12 Score=24.27 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHH
Q 045016 74 DGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWK 153 (204)
Q Consensus 74 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~ 153 (204)
..+.+++.. +.-.+|..+... ....+.+++|++. +.-.++..+..-++....| -..+.++=||-.+.+.+.+.+
T Consensus 29 ~lt~~d~~~-l~~~l~~~l~~~--~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~ 102 (126)
T 2q3l_A 29 KLTHEDYEQ-MTPLLESALAGI--KTPEIVALIDITE--LDGLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATR 102 (126)
T ss_dssp EECHHHHHH-HHHHHHHHTTTC--CSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHH
T ss_pred eECHHHHHH-HHHHHHHHHHhC--CCceEEEEEEecC--CCCCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHH
Confidence 345677765 666677555531 1223777777754 3334455544444433344 488999999999999999999
Q ss_pred HhccCCCccc
Q 045016 154 VVYPFIDDNT 163 (204)
Q Consensus 154 ~~k~~l~~~~ 163 (204)
+.++|++.++
T Consensus 103 ~~~~~~~~ev 112 (126)
T 2q3l_A 103 VANWFTPGEF 112 (126)
T ss_dssp HHHHHCSSEE
T ss_pred HHhhccCCce
Confidence 9999977654
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=75.87 E-value=2.6 Score=21.11 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=13.1
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAML 20 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l 20 (204)
.+-|+++++|++.|.+.|
T Consensus 22 ~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 22 AQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 356788888888887654
No 11
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=74.11 E-value=2.7 Score=22.14 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHhcCCCHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLL 21 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~ 21 (204)
.+=|+++++|+++|.+.|.
T Consensus 26 ~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 26 VAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4678999999999998774
No 12
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.50 E-value=3.5 Score=23.74 Aligned_cols=21 Identities=29% Similarity=0.047 Sum_probs=18.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
++=|++.++||++|.+.|.++
T Consensus 38 ~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 38 LQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 577999999999999988764
No 13
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=73.31 E-value=2.7 Score=23.43 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=17.2
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~ 22 (204)
++=|+++++|+++|.+.|..
T Consensus 36 ~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 36 VAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 56789999999999998865
No 14
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=71.55 E-value=2.8 Score=22.84 Aligned_cols=20 Identities=35% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~ 22 (204)
.+-|+++++|+++|.+.|..
T Consensus 30 ~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 30 LQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 45688899999999888765
No 15
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=70.85 E-value=4.5 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.5
Q ss_pred hHHHHHhcCCCHHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAMLL 21 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l~ 21 (204)
|-|.|.+.++|+.+|.+.|.
T Consensus 29 Lt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 29 LTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHhh
Confidence 56889999999999998874
No 16
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=70.81 E-value=2.6 Score=22.16 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.1
Q ss_pred HHHHHhcCCCHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAM 19 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~ 19 (204)
..||.+++||++.|...
T Consensus 25 ~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 25 ITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHTTTCHHHHHTT
T ss_pred HHHHHHcCCcHHHHHHH
Confidence 35899999999999753
No 17
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=68.48 E-value=2.9 Score=21.76 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.0
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAML 20 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l 20 (204)
..||.+++||++.|...+
T Consensus 24 ~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 24 RFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 468999999999998765
No 18
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.57 E-value=5.6 Score=21.80 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
.+-|+.+++|+++|.+.|.+.
T Consensus 28 ~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 28 LRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhc
Confidence 466899999999998887653
No 19
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.08 E-value=5.7 Score=22.18 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=17.6
Q ss_pred hHHHHHhcCCCHHHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l~~ 22 (204)
+-.-|+++++|++.|...|.+
T Consensus 28 I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 28 IRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHc
Confidence 345689999999999999865
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=65.15 E-value=3.5 Score=22.01 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=14.2
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~ 22 (204)
+=|+++++|+++|.+.|..
T Consensus 27 ~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 27 AALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHh
Confidence 4578888888888877654
No 21
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.83 E-value=6 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=15.3
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~~ 23 (204)
+=|+++++|+++|.+-|..+
T Consensus 28 ~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 28 QALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 45788888888888877654
No 22
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=62.72 E-value=6.4 Score=23.14 Aligned_cols=20 Identities=45% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~ 22 (204)
++=|++.++|+++|.+.|..
T Consensus 48 ~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 48 LQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 56789999999999988764
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=62.21 E-value=5.2 Score=20.48 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=12.5
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLL 21 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~ 21 (204)
+=|+++++|++.|.+-|.
T Consensus 23 ~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 23 NALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHH
Confidence 446777778888776654
No 24
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.76 E-value=5.9 Score=22.28 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.3
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAML 20 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l 20 (204)
..||.+++||++.|...+
T Consensus 34 ~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 34 KHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 468999999999998765
No 25
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=61.66 E-value=6.8 Score=21.16 Aligned_cols=19 Identities=37% Similarity=0.223 Sum_probs=14.4
Q ss_pred HHHHHhcCCCHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLL 21 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~ 21 (204)
.+=|+++++|+++|.+.|.
T Consensus 31 ~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 31 LQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 3557888888888888764
No 26
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.39 E-value=6.4 Score=22.59 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHHhcCCCHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLL 21 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~ 21 (204)
..||..++||++.|...+-
T Consensus 38 ~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 38 RHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4689999999999987654
No 27
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=58.12 E-value=8.7 Score=20.55 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
-+-|+.+++|+++|...|.+.
T Consensus 24 k~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 24 QVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhc
Confidence 356899999999999998764
No 28
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.55 E-value=12 Score=21.41 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.0
Q ss_pred hHHHHHhcCCCHHHHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l~~~ 23 (204)
+-.-|+++++|++.|.+.|.+.
T Consensus 37 I~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 37 IECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhc
Confidence 3456899999999999998764
No 29
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=55.31 E-value=11 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
.+=|+++++|+++|.+-|..+
T Consensus 47 ~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 47 EAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 356888888998888887765
No 30
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.92 E-value=9.5 Score=21.44 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=14.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLKYL 24 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~~~ 24 (204)
+=|+++++|+++|.+-|..+.
T Consensus 28 ~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 28 KALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCC
Confidence 446777777887777776653
No 31
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=53.24 E-value=8.3 Score=22.57 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=13.9
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~ 22 (204)
+=|+.+++|+++|.+.|..
T Consensus 48 ~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 48 VALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 4577888888888777653
No 32
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.65 E-value=11 Score=21.59 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.2
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAML 20 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l 20 (204)
..||.+++||++.|...+
T Consensus 36 ~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 36 KQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 468999999999998765
No 33
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=52.64 E-value=11 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=16.5
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 045016 5 FLRARDLDIEKASAMLLKYL 24 (204)
Q Consensus 5 fL~~~~~~v~~a~~~l~~~~ 24 (204)
=|..+++|+++|.+.|++--
T Consensus 30 AL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 30 ALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHh
Confidence 36778999999999998763
No 34
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=52.52 E-value=8.6 Score=22.45 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=13.6
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~ 22 (204)
+=|+++++|+++|.+-|..
T Consensus 48 ~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 48 KALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHh
Confidence 4577788888888776654
No 35
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.56 E-value=34 Score=18.51 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
.|=|...++|++.|...|+++
T Consensus 27 i~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 27 QKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 456778888999888888765
No 36
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=43.37 E-value=35 Score=23.96 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc-----cCCCccccceEEEEcCCcchHHHhhcCCC
Q 045016 117 DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY-----PFIDDNTKKKIVFVENKNLTSTLLDEIDK 185 (204)
Q Consensus 117 ~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k-----~~l~~~~~~ki~~~~~~~~~~~L~~~i~~ 185 (204)
+++.+..++...|-.. .-+.+.++|..-+++-+..++. .|++++-++.+.+..+. +++.+++.|
T Consensus 121 TLdElfe~lt~~qlg~--~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~---ee~~~~l~~ 189 (189)
T 3sbx_A 121 TLDELLDVWTEGYLGM--HDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNL---DDALQACAP 189 (189)
T ss_dssp HHHHHHHHHHHHHTTS--CCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSH---HHHHHHHCC
T ss_pred hHHHHHHHHHHHHhcc--cCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCH---HHHHHHhcC
Confidence 3445555554445443 2368999999766666665543 47888888889998874 777776643
No 37
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.21 E-value=31 Score=19.36 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=13.7
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~ 22 (204)
.|=|++++.|+|+|++=|-.
T Consensus 37 ~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 37 LRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 35577788888888765543
No 38
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.86 E-value=23 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHhc-CCCHHHHHHHHHHH
Q 045016 4 RFLRAR-DLDIEKASAMLLKY 23 (204)
Q Consensus 4 rfL~~~-~~~v~~a~~~l~~~ 23 (204)
+=|+++ ++|++.|.+-|..+
T Consensus 28 ~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 28 KALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhC
Confidence 345666 56777776666544
No 39
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.86 E-value=20 Score=21.45 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~~ 23 (204)
+=|+++++|++.|.+-|..+
T Consensus 48 ~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 48 KALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 44667777777777766554
No 40
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.15 E-value=45 Score=17.97 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
.+=|+..++|++.|...|++.
T Consensus 29 i~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 29 KRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 456788888888888877764
No 41
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=38.78 E-value=63 Score=19.42 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=31.9
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 103 VYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 103 ~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
.+|+|+++++ .++.+.+..+....+ ....+-..+.++|++.-+..++....
T Consensus 46 ~vvlDls~v~--~iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 96 (110)
T 1sbo_A 46 KIVLDLSSVS--YMDSAGLGTLVVILK-DAKINGKEFILSSLKESISRILKLTH 96 (110)
T ss_dssp EEEEECTTCC--CBCHHHHHHHHHHHH-HHHHTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCc--EEccHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 5799999954 455444444444332 23345577889999887776666543
No 42
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=38.61 E-value=50 Score=21.98 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccc----eEEEeCChhHHHHHHHhccCCC-c-----cccceEE
Q 045016 99 HEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGK----LYIVHAPKLFMTVWKVVYPFID-D-----NTKKKIV 168 (204)
Q Consensus 99 ~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~----i~ivn~p~~~~~~~~~~k~~l~-~-----~~~~ki~ 168 (204)
....++|++++.+.++- +....-.......||+-+.. -+.-..| -.+++..++..|| + +..+|.+
T Consensus 24 ~Gd~VVViNaeki~iTG---~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P--~~ii~~aVrGMLP~k~~lgr~~l~rLk 98 (142)
T 1j3a_A 24 EGEEVVIVNAEKAVITG---NREVIFSKYKQRTGLRTLTNPRRGPFYPKRS--DEIVRRTIRGMLPWKTDRGRKAFRRLK 98 (142)
T ss_dssp TTCCEEEECGGGCEEES---CHHHHHHHHHHHC-------------CCCSH--HHHHHHHHHTTTTTTSHHHHHHHTTEE
T ss_pred cCCEEEEEeCeeeEecc---cHHhheeeeeecCCCCCCcCCccCcccccCH--HHHHHHHHHhhccCCCHHHHHHHhCcE
Confidence 45678999998876653 23333334445677776433 2333444 4788999999999 3 2446788
Q ss_pred EEcCC
Q 045016 169 FVENK 173 (204)
Q Consensus 169 ~~~~~ 173 (204)
+..+.
T Consensus 99 Vy~G~ 103 (142)
T 1j3a_A 99 VYVGI 103 (142)
T ss_dssp ECSSC
T ss_pred EeCCC
Confidence 88664
No 43
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.21 E-value=20 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=17.5
Q ss_pred hHHHHHhcCCCHHHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l~~ 22 (204)
+.+-|..+++|+|++...|.+
T Consensus 32 i~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 32 ILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHc
Confidence 556788899999999988866
No 44
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=37.46 E-value=54 Score=21.93 Aligned_cols=70 Identities=4% Similarity=-0.101 Sum_probs=42.0
Q ss_pred CceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCC-cc-----ccceEEEEcC
Q 045016 99 HEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFID-DN-----TKKKIVFVEN 172 (204)
Q Consensus 99 ~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~-~~-----~~~ki~~~~~ 172 (204)
....++|++++.+.++- +....-.......||+.-..-+.-..| -.+++..++..|| +. ..+|.++..+
T Consensus 32 ~Gd~VVViNaeki~iTG---~k~~~K~yy~htg~~g~~~~~~~~r~P--~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G 106 (145)
T 1vq8_J 32 DGETVAVVNAERAVITG---REEQIVEKYEKRVDIGNDNGYFYPKRP--DGIFKRTIRGMLPHKKQRGREAFESVRVYLG 106 (145)
T ss_dssp TTCCEEEECGGGCEEES---CHHHHHHHHHHHHHCCCSSCCCCCCSH--HHHHHHHHHTTTTTTSHHHHHHHHTEEECSS
T ss_pred cCCEEEEEeCEeeEecc---hhhhheeeeEEeCCCCCCHHHHhhcCh--HHHHHHHHHhhcCCCCHHHHHHHhCeEEECC
Confidence 45678888888866653 233333344455677742222333334 4788899999999 43 3357888765
Q ss_pred C
Q 045016 173 K 173 (204)
Q Consensus 173 ~ 173 (204)
.
T Consensus 107 ~ 107 (145)
T 1vq8_J 107 N 107 (145)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=37.13 E-value=78 Score=19.96 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 102 FVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 102 ~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
-.+|+|+++++ .++.+.+.-++...+ ..-.+-..+.++|++.-+.-++....
T Consensus 53 ~~vvlDls~V~--~iDSsGl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 53 NKIFLVLSDVE--SIDSFSLGVIVNILK-SISSSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp CEEEEECTTCS--CCCHHHHHHHHHHHH-HHHHHTCEEEEECCCHHHHHHHHHTT
T ss_pred CEEEEECCCCC--EEcHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 36899999955 444444443333322 23344578899999988877776654
No 46
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.34 E-value=19 Score=22.61 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~~ 23 (204)
.-|..++||+++|...|..-
T Consensus 59 ~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 59 IALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHhC
Confidence 45778888999888887654
No 47
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=35.41 E-value=89 Score=20.11 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 102 FVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 102 ~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
-.+|+|+++++ .++.+.+..+.. +...+-.+=..++++|++.-..-++....
T Consensus 65 ~~vvlDls~v~--~iDssgl~~L~~-~~~~~~~~g~~l~l~~~~~~v~~~l~~~g 116 (143)
T 3llo_A 65 HTVILDFTQVN--FMDSVGVKTLAG-IVKEYGDVGIYVYLAGCSAQVVNDLTSNR 116 (143)
T ss_dssp SEEEEECTTCC--CCCHHHHHHHHH-HHHHHHTTTCEEEEESCCHHHHHHHHHTT
T ss_pred eEEEEECCCCc--cccHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHHHhCC
Confidence 47999999954 455554444333 33444567788999999877766665543
No 48
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=34.94 E-value=50 Score=23.33 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhcc-----CCCccccceEEEEcCCcchHHHhhcCCC
Q 045016 117 DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYP-----FIDDNTKKKIVFVENKNLTSTLLDEIDK 185 (204)
Q Consensus 117 ~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~-----~l~~~~~~ki~~~~~~~~~~~L~~~i~~ 185 (204)
+++.+..++...|-.+. -+.+.++|..-+++-++.++.. |++++-.+.+.+..+. +++.+.+.+
T Consensus 130 TldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~---~e~~~~l~~ 198 (199)
T 3qua_A 130 TLEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNV---EAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESSH---HHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCH---HHHHHHHhc
Confidence 35555555555555542 3689999987777777776553 5666667788888764 777766643
No 49
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=34.24 E-value=77 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=24.0
Q ss_pred ceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEE
Q 045016 100 EKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIV 142 (204)
Q Consensus 100 ~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~iv 142 (204)
.++++|.|. + -+++.++.+++.+...||. +++.+|
T Consensus 35 ~g~~vi~Dy-a-----HnP~si~a~l~al~~~~~~--~riivv 69 (163)
T 3mvn_A 35 NNITVYDDF-A-----HHPTAITATIDALRAKVGQ--QRILAV 69 (163)
T ss_dssp TTEEEEEEC-C-----CSHHHHHHHHHHHHHHHTT--SCEEEE
T ss_pred CCcEEEEcC-C-----CCHHHHHHHHHHHHHhcCC--CcEEEE
Confidence 467888883 2 2477888888888887886 344444
No 50
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.04 E-value=17 Score=20.48 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=11.5
Q ss_pred HHHHhcCC-CHHHHHHHHH
Q 045016 4 RFLRARDL-DIEKASAMLL 21 (204)
Q Consensus 4 rfL~~~~~-~v~~a~~~l~ 21 (204)
+=|+++++ |++.|.+-|.
T Consensus 38 ~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 38 KALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 44666666 7777766554
No 51
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=33.44 E-value=92 Score=19.69 Aligned_cols=51 Identities=18% Similarity=0.015 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016 102 FVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV 155 (204)
Q Consensus 102 ~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~ 155 (204)
-.+|+|+++++ .++.+.+..+.. +...+-.+-.++++.+++.-..-++...
T Consensus 50 ~~vvlDls~v~--~iDssgl~~L~~-~~~~~~~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVP--FMDITGIQTLEE-MIQSFHKRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCC--CCCHHHHHHHHH-HHHHHHTTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCC--cccHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 47999999954 455544443333 3344456778899999988776665544
No 52
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=32.88 E-value=4 Score=18.76 Aligned_cols=6 Identities=83% Similarity=1.143 Sum_probs=3.1
Q ss_pred HHHHHh
Q 045016 3 RRFLRA 8 (204)
Q Consensus 3 lrfL~~ 8 (204)
+|||||
T Consensus 15 LRFLRA 20 (28)
T 2k44_A 15 LRFLRA 20 (28)
T ss_dssp STTCTT
T ss_pred HHHHHH
Confidence 455554
No 53
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=32.70 E-value=91 Score=19.43 Aligned_cols=51 Identities=12% Similarity=-0.028 Sum_probs=35.0
Q ss_pred EEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 102 FVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 102 ~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
-.+|+|+++++ .++.+.+..+....+ .+.. -.++++.+.+.-..-++....
T Consensus 47 ~~vilDl~~v~--~iDssgl~~L~~~~~-~~~~-g~~l~l~~~~~~v~~~l~~~g 97 (118)
T 3ny7_A 47 RIVILKWDAVP--VLDAGGLDAFQRFVK-RLPE-GCELRVCNVEFQPLRTMARAG 97 (118)
T ss_dssp SEEEEEEEECC--CBCHHHHHHHHHHHH-HCCT-TCEEEEECCCHHHHHHHHHTT
T ss_pred cEEEEEcCCCC--eecHHHHHHHHHHHH-HHHC-CCEEEEecCCHHHHHHHHHcC
Confidence 46999999844 566666665555444 3445 788999999887776666543
No 54
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=32.63 E-value=1e+02 Score=19.99 Aligned_cols=42 Identities=14% Similarity=0.032 Sum_probs=24.7
Q ss_pred CceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHH
Q 045016 99 HEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWK 153 (204)
Q Consensus 99 ~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~ 153 (204)
.+|++++.|+ |-+. ++... .+. ... .++.|+|.|....++..
T Consensus 58 ~dgVlvltDL-Ggsp--~N~~~-----al~-~~~----~~v~viNlPmvega~~a 99 (131)
T 3ct6_A 58 ADNLLTFFDL-GSAR--MNLDL-----VSE-MTD----KELTIFNVPLIEGAYTA 99 (131)
T ss_dssp CSEEEEEESS-GGGH--HHHHH-----HHH-TCS----SEEEECCSCHHHHHHHH
T ss_pred CCCEEEEEeC-CCCh--HHHHH-----HHH-hcC----CCEEEEEhhHHHHHHHH
Confidence 3799999999 5222 22111 111 111 37888899998665554
No 55
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=32.40 E-value=40 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.9
Q ss_pred hHHHHHhcCCCHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAML 20 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l 20 (204)
+.+-|..+++|+.+|++.|
T Consensus 46 I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHh
Confidence 4567888999999999887
No 56
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=31.99 E-value=68 Score=19.55 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=32.6
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 103 VYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 103 ~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
.+|+|++++ ..++.+.+..+.... .....+-..+.++|++.-+.-++....
T Consensus 45 ~vvlDls~v--~~iDssgl~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~g 95 (116)
T 1th8_B 45 HIVLNLGQL--TFMDSSGLGVILGRY-KQIKNVGGQMVVCAVSPAVKRLFDMSG 95 (116)
T ss_dssp EEEEEEEEE--EEECHHHHHHHHHHH-HHHHHTTCCEEEESCCHHHHHHHHHHT
T ss_pred EEEEECCCC--cEEccHHHHHHHHHH-HHHHHhCCeEEEEeCCHHHHHHHHHhC
Confidence 579999984 445544444444332 233345578999999988777776654
No 57
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=31.28 E-value=1.3e+02 Score=20.88 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhHhhhccCCCCCChhhHHHHHhhCc-ceeeCCCCCCCcEEEE
Q 045016 12 DIEKASAMLLKYLSWRRDFVPNGLISESEIQNHLAKNI-LNMQGFDKKGRPILVA 65 (204)
Q Consensus 12 ~v~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~~~-~~~~g~d~~g~pV~~~ 65 (204)
+.++..+.+....+-|......+.++.++....+..-. .-.+.....|||+++.
T Consensus 129 ~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 129 DIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH 183 (197)
T ss_dssp CHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE
T ss_pred CHHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE
Confidence 45555555666666666655544577777776665422 3355678899999876
No 58
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.13 E-value=54 Score=18.08 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 045016 3 RRFLRARDLDIEKASAMLLKYLS 25 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~~~ 25 (204)
.+.|..++||.++|.+...+-.+
T Consensus 26 ~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 26 QKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 35688889999999988776543
No 59
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.05 E-value=46 Score=18.28 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=15.7
Q ss_pred hHHHHHhcCCCHHHHHHHH
Q 045016 2 IRRFLRARDLDIEKASAML 20 (204)
Q Consensus 2 LlrfL~~~~~~v~~a~~~l 20 (204)
+.+-|..+++|+.+|++.|
T Consensus 24 i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 24 IEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4566888899999999987
No 60
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=30.93 E-value=1.2e+02 Score=20.21 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhhHHHHHhh------CcceeeCCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 045016 38 ESEIQNHLAK------NILNMQGFDKKGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAK 94 (204)
Q Consensus 38 ~~~~~~~l~~------~~~~~~g~d~~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 94 (204)
.++++..+.+ |..-+.=.|++|.|++-+-..... +......++.-+..+.|++-..
T Consensus 21 ~~~Lq~~L~~ll~rv~Gl~aI~ItDrDGVpi~kv~~~~~~-e~~~r~s~lsTf~~A~dQ~sKL 82 (143)
T 3cpt_A 21 ADDLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDNAP-EHALRPGFLSTFALATDQGSKL 82 (143)
T ss_dssp -CHHHHHHHHHGGGSTTEEEEEEECTTSCEEEEEECTTSC-GGGGSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCCCcEEEEecCCCCc-hhhcccchhhhHHHHHHHHhhc
Confidence 3555555433 222233379999999988765533 2222335667777788876554
No 61
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=30.56 E-value=96 Score=19.02 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=34.2
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 103 VYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 103 ~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
.+|+|++++ ..++.+.+..++...+ ..-.+-.++.++|++.-+.-++.+..
T Consensus 44 ~vvlDls~v--~~iDssgl~~L~~~~~-~~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 4hyl_A 44 KMILDLREV--SYMSSAGLRVLLSLYR-HTSNQQGALVLVGVSEEIRDTMEITG 94 (117)
T ss_dssp EEEEEEEEE--EEECHHHHHHHHHHHH-HHHHTTCEEEEECCCHHHHHHHHHHT
T ss_pred eEEEECCCC--cEEcHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 899999994 4455554444444332 23345678899999988887777664
No 62
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.53 E-value=23 Score=18.40 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=8.3
Q ss_pred HHhcCCCHHHHHHHHH
Q 045016 6 LRARDLDIEKASAMLL 21 (204)
Q Consensus 6 L~~~~~~v~~a~~~l~ 21 (204)
|++++ |++.|.+-|.
T Consensus 30 L~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 30 LLNTS-TMEQATEYLL 44 (47)
T ss_dssp HHHSC-SHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHH
Confidence 55554 6666665543
No 63
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=30.53 E-value=1.1e+02 Score=19.57 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016 101 KFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV 155 (204)
Q Consensus 101 ~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~ 155 (204)
.-.+|+|+++++ .++.+.+..+.. +...+-.+-.++++++++.-..-++...
T Consensus 52 ~~~vvlDls~v~--~iDssgl~~L~~-~~~~~~~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 52 PKVFILRMRRVP--VIDATGMHALWE-FQESCEKRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp CSEEEEECTTCS--CBCHHHHHHHHH-HHHHHHHHTCEEEEESCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCC--ccCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHHHHc
Confidence 347999999955 445444443333 2334456778899999987776555543
No 64
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=30.38 E-value=48 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHh
Q 045016 5 FLRARDLDIEKASAMLLKYLS 25 (204)
Q Consensus 5 fL~~~~~~v~~a~~~l~~~~~ 25 (204)
.|...+.|+++|.++|.+...
T Consensus 33 ILK~A~~d~eeAsrrI~Eg~~ 53 (65)
T 1zv1_A 33 ILKDADANIEEASRRIEEGQY 53 (65)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHH
Confidence 467788899999999987654
No 65
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.21 E-value=26 Score=21.07 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=12.0
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~ 22 (204)
+=|+++++|++.|.+-|..
T Consensus 40 ~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 40 EALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 3456677777777666653
No 66
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=30.06 E-value=28 Score=22.26 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=10.3
Q ss_pred HHhhchhccccceE
Q 045016 127 ILQDCFPERLGKLY 140 (204)
Q Consensus 127 ~~~~~yP~~l~~i~ 140 (204)
.+-++||+|+.+|.
T Consensus 72 LiPkgyPGRv~eIi 85 (137)
T 1jvr_A 72 LIPKGYPGRVVEII 85 (137)
T ss_dssp HSCSSCSTTHHHHH
T ss_pred hccCCCCchHHHHH
Confidence 35689999987653
No 67
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=29.31 E-value=1.1e+02 Score=19.97 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEE---eCChhHHHHH
Q 045016 100 EKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIV---HAPKLFMTVW 152 (204)
Q Consensus 100 ~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~iv---n~p~~~~~~~ 152 (204)
.|++++.|+-|-+..+. ...+... . .++.+| |.|..+.++.
T Consensus 62 ~gvliLtDl~GGSp~n~-------a~~~~~~-~----~~v~vi~GvNlpmlle~~~ 105 (142)
T 3bed_A 62 VPTLVLADLXGGTPCNV-------AMMAMGT-Y----PQLRVVAGLNLAMAIEAAV 105 (142)
T ss_dssp CCEEEEESSTTSHHHHH-------HHHHTTT-C----TTEEEEESCCHHHHHHHHH
T ss_pred CCEEEEEECCCCHHHHH-------HHHHhcc-C----CCEEEEeCCCHHHHHHHHH
Confidence 79999999988333322 3333322 1 267788 9887777654
No 68
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=29.16 E-value=82 Score=22.29 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccc-----cceEEEeCChhHHHHHHHhccCCCcc------ccceE
Q 045016 99 HEKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERL-----GKLYIVHAPKLFMTVWKVVYPFIDDN------TKKKI 167 (204)
Q Consensus 99 ~~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l-----~~i~ivn~p~~~~~~~~~~k~~l~~~------~~~ki 167 (204)
....++||.++.+.++--... .-.......++... +.++ -..| -.+++..++..||.+ ..++.
T Consensus 28 ~GD~VVVINAekI~iTG~K~~---~K~yy~~~l~~~~~~~~~~g~~~-~r~P--~rIi~~AVrGMLPkK~~lGr~~l~rL 101 (198)
T 4a17_I 28 SGQRIVVVRTEAINISGSLFR---NRVKFSEFLNKWMNHNPRRGVQH-FRAP--SRIFWRAVRGMLPHKTPKGAAALERL 101 (198)
T ss_dssp TTCCEEEECGGGCEEESCHHH---HHHHHHHHHTCCCSSCTTSSCCC-CCSH--HHHHHHHHHTTTTTTSHHHHHHHHHC
T ss_pred CCCEEEEEcCccccccCchhh---heeeeeeccccccCCCCcccccc-ccCH--HHHHHHHHhccCCCCChhHHHHHhCc
Confidence 356788889888776532111 11111001112221 2222 2333 378888999999952 34567
Q ss_pred EEEcCC
Q 045016 168 VFVENK 173 (204)
Q Consensus 168 ~~~~~~ 173 (204)
++..+.
T Consensus 102 kVy~G~ 107 (198)
T 4a17_I 102 KIFEGI 107 (198)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 777653
No 69
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.78 E-value=45 Score=19.34 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=11.9
Q ss_pred HHHHhcCC-CHHHHHHHHHHH
Q 045016 4 RFLRARDL-DIEKASAMLLKY 23 (204)
Q Consensus 4 rfL~~~~~-~v~~a~~~l~~~ 23 (204)
+=|+++++ |++.|.+-|..+
T Consensus 28 ~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 28 KAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHhC
Confidence 34566654 677776666544
No 70
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=28.53 E-value=1.8e+02 Score=21.61 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCCc---cHHHHHHHHHHHhhchhc
Q 045016 58 KGRPILVAFASRHKPSDGTLEDFKRFVVYCLDKICAKMPKGHEKFVYIGDLQGWGYSCS---DIRAYLACLSILQDCFPE 134 (204)
Q Consensus 58 ~g~pV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iiD~~g~~~~~~---~~~~~~~~~~~~~~~yP~ 134 (204)
.|.|++.+-.........-.+++..++....+.+.. .+...--+|+|- |+++..- ++..++.+-.+..-.||.
T Consensus 124 ~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~---aGI~~~~IilDP-GiGFgKt~~~N~~ll~~l~~~~~lg~Pv 199 (270)
T 4hb7_A 124 YDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKI---AGIPSNKIWLDP-GIGFAKTRNEEAEVMARLDELVATEYPV 199 (270)
T ss_dssp TTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEC-CTTSSCCHHHHHHHHTCHHHHHTTCSCB
T ss_pred cCCCeEEeccccCCccccchhHHHHHHHHHHHHHHH---cCCCCceEEEeC-CCCcccccccHHHHHhhHHHHhcCCCCE
Confidence 567888775544332222345666666666665544 233333578996 7777653 466666666655667776
Q ss_pred cc
Q 045016 135 RL 136 (204)
Q Consensus 135 ~l 136 (204)
.+
T Consensus 200 Lv 201 (270)
T 4hb7_A 200 LL 201 (270)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 71
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=26.81 E-value=31 Score=24.46 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccce----EEEeCChhHHHHHHHhccCCCc-c-----ccceEEE
Q 045016 100 EKFVYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKL----YIVHAPKLFMTVWKVVYPFIDD-N-----TKKKIVF 169 (204)
Q Consensus 100 ~~~~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i----~ivn~p~~~~~~~~~~k~~l~~-~-----~~~ki~~ 169 (204)
...++|+.+..+.++- +....-+......||.-++.. +.-..|. ++++..++..||- . ..++.++
T Consensus 30 Gd~VVVVNaeki~iTG---~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~--~il~~aVrGMLP~K~~lGr~~l~rLkV 104 (199)
T 4b6a_O 30 GQKIVVVRAEELNISG---EFFRNKLKYHDFLRKATAFNKTRGPFHFRAPS--RILYKAIRGMVSHKTARGKAALERLKI 104 (199)
T ss_dssp TCEEEEECGGGCEEES---CHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHH--HHHHHHHHTTSCTTSHHHHHHHHTEEE
T ss_pred CCEEEEEEchheEEeC---cHHHHHHHhhccccccccccCCHHHHhhcCcH--HHHHHHHhccCCCCChhhhHHHhccEE
Confidence 5678888888766542 223333334445677765432 2334443 6888999999993 2 3457787
Q ss_pred EcCC
Q 045016 170 VENK 173 (204)
Q Consensus 170 ~~~~ 173 (204)
..+.
T Consensus 105 y~G~ 108 (199)
T 4b6a_O 105 FEGI 108 (199)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 7653
No 72
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=23.94 E-value=87 Score=18.70 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAMLLKY 23 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l~~~ 23 (204)
.+-.-.++||+++|...+.+-
T Consensus 55 v~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 55 TEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHhc
Confidence 344567899999999988654
No 73
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=22.97 E-value=32 Score=16.21 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=3.2
Q ss_pred CCCccccCCCCCCccCCC
Q 045016 186 SQLPDIYGGKLPLVPIQD 203 (204)
Q Consensus 186 ~~lP~~~GG~~~~~~~~~ 203 (204)
+.||.+-|-+..-.++.|
T Consensus 2 e~lpte~gqsgstteved 19 (36)
T 1o9a_B 2 ESLPTEQGQSGSTTEVED 19 (36)
T ss_dssp -----------CCBCCCC
T ss_pred CccccccccCCCceeeec
Confidence 457777776555444443
No 74
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=22.86 E-value=49 Score=17.21 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 045016 3 RRFLRARDLDIEKASAML 20 (204)
Q Consensus 3 lrfL~~~~~~v~~a~~~l 20 (204)
.+=|.+|++|++.|..-|
T Consensus 22 ~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 22 IQAYFACEKNENLAANFL 39 (47)
T ss_dssp HHHHTTTTSCHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 345777888888887654
No 75
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=22.83 E-value=98 Score=18.90 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=31.7
Q ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhc
Q 045016 103 VYIGDLQGWGYSCSDIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVY 156 (204)
Q Consensus 103 ~~iiD~~g~~~~~~~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k 156 (204)
.+++|+++++ .++.+.+..+.... ...-.+-..+.++|++.-..-++....
T Consensus 44 ~vvlDls~v~--~iDssgl~~L~~~~-~~~~~~g~~l~l~~~~~~v~~~l~~~g 94 (117)
T 1h4x_A 44 TIIWNFERLS--FMDSSGVGLVLGRM-RELEAVAGRTILLNPSPTMRKVFQFSG 94 (117)
T ss_dssp EEEEEEEEEE--EECTHHHHHHHHHH-HHHHTTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCc--EechHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHHHHhC
Confidence 5799999854 44444444333322 223345678899999987777776653
No 76
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=21.99 E-value=1.2e+02 Score=17.36 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHhHhhhc
Q 045016 5 FLRARDLDIEKASAMLLKYLSWRRDF 30 (204)
Q Consensus 5 fL~~~~~~v~~a~~~l~~~~~~R~~~ 30 (204)
=|..++||.++...-+..+.+.++++
T Consensus 17 CL~~N~yd~skCq~~id~L~eCc~~~ 42 (68)
T 1hp8_A 17 CLQANSYMESKCQAVIQELRKCCAQY 42 (68)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999986
No 77
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.77 E-value=1.6e+02 Score=18.51 Aligned_cols=51 Identities=6% Similarity=-0.150 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCCCCCc-cHHHHHHHHHHHhhchhccccceEEEeCChhHHHHHHHh
Q 045016 101 KFVYIGDLQGWGYSCS-DIRAYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVV 155 (204)
Q Consensus 101 ~~~~iiD~~g~~~~~~-~~~~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~ 155 (204)
.-.+|+|+++++.-.. .+..+..+.+.++ .+-..++++|++.-+.-++...
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 99 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRAA 99 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHHC
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 3479999999765443 3555555555443 4567789999987766655553
No 78
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=21.23 E-value=1.1e+02 Score=21.81 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCCCCCCccH--H-HHHHHHHHHhhchhccccceEEEeCChhHHHHHHHhccCCCcc------ccceEEEE
Q 045016 100 EKFVYIGDLQGWGYSCSDI--R-AYLACLSILQDCFPERLGKLYIVHAPKLFMTVWKVVYPFIDDN------TKKKIVFV 170 (204)
Q Consensus 100 ~~~~~iiD~~g~~~~~~~~--~-~~~~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~~k~~l~~~------~~~ki~~~ 170 (204)
...++|++++.+.++--.. . .....+.--....|. .+.++- ..| -.+++..++..||.+ ..++.++.
T Consensus 35 Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~-~~~~~~-r~P--~~Il~~AVrGMLPkk~~lGr~~l~rLkVy 110 (206)
T 3iz5_K 35 GQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS-HGPIHF-RAP--AKILWRTIRGMIPHKTARGEAALARLKAY 110 (206)
T ss_dssp TCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSS-SCSCCC-CSH--HHHHHHHHHHHSCTTSHHHHHHHTTEEEE
T ss_pred CCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCc-ccchhh-cCH--HHHHHHHHhccCCCCChhHHHHHhCCEEe
Confidence 5578899998877753211 1 111111111111121 133333 333 367778888888862 34578888
Q ss_pred cCC
Q 045016 171 ENK 173 (204)
Q Consensus 171 ~~~ 173 (204)
.+.
T Consensus 111 ~G~ 113 (206)
T 3iz5_K 111 EGV 113 (206)
T ss_dssp SSC
T ss_pred CCC
Confidence 664
No 79
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.07 E-value=1.1e+02 Score=21.74 Aligned_cols=25 Identities=8% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHHHHHhccCCCcc------ccceEEEEcC
Q 045016 148 FMTVWKVVYPFIDDN------TKKKIVFVEN 172 (204)
Q Consensus 148 ~~~~~~~~k~~l~~~------~~~ki~~~~~ 172 (204)
-.+++..++..||.+ ..++.++..+
T Consensus 77 ~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G 107 (203)
T 2zkr_j 77 SRIFWRTVRGMLPHKTKRGQAALDRLKVFDG 107 (203)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHTEEECSC
T ss_pred HHHHHHHHHhhCCCCChhHHHHHhCcEEeCC
Confidence 367778888888873 2346777655
No 80
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=20.64 E-value=77 Score=17.34 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.8
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 045016 4 RFLRARDLDIEKASAMLLK 22 (204)
Q Consensus 4 rfL~~~~~~v~~a~~~l~~ 22 (204)
+.|...+||.++|.+...+
T Consensus 26 ~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 26 MLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5677889999999988877
No 81
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=20.35 E-value=89 Score=18.31 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHhcCCCHHHHHHHHHHH----HhHhhhccC
Q 045016 5 FLRARDLDIEKASAMLLKY----LSWRRDFVP 32 (204)
Q Consensus 5 fL~~~~~~v~~a~~~l~~~----~~~R~~~~~ 32 (204)
-|...+.|+++|.++|.+. -.|++.+..
T Consensus 33 ILK~a~~d~eeAsrrI~eg~~~vn~~~r~h~~ 64 (80)
T 2jz1_A 33 ILKDADANIEEASRRIEEGQYVVNEYSRQHNL 64 (80)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888999999999763 335455444
Done!