BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045017
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
+G SLY VL L+ AT +IK +YR LA YHPD
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPD 48
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
G+ G Y++L + A+ EIK AY LAK YHPD
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPD 38
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y+VL ++P AT E+K AYR LA YHPD
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPD 37
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPDFVGAVYDMTLVSRRRTRTASFRCSGQSG--- 69
Y +L ++PT + IK AYR LA+ YHPD VS+ A F+ ++
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPD----------VSKENDAEAKFKDLAEAWEVL 80
Query: 70 FHPARKWETDQCW 82
R+ E DQ W
Sbjct: 81 KDEQRRAEYDQLW 93
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y+VL ++P A+ E+K AYR +A +HPD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD 39
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
G+ G YE+L + A+ ++K AYR LA +HPD
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPD 38
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
YE+L + TA EI+ AY+ LA YHPD
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 33.9 bits (76), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPDFVGAVYDMTLVSRRRTRTASFRCSGQSG--- 69
Y ++ ++PT + IK AYR LA+ YHPD VS+ A F+ ++
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPD----------VSKEPDAEARFKEVAEAWEVL 57
Query: 70 FHPARKWETDQCW 82
R+ E DQ W
Sbjct: 58 SDEQRRAEYDQMW 70
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
YE+L + TA EI+ AY+ LA YHPD
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
YE+L + TA EI+ AY+ LA YHPD
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 7 GTGG--SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
G+ G + YEVL ++ +A+ +IK AYR LA +HPD
Sbjct: 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPD 40
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 12 LYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
LY++L + P+A E+K YR A YHPD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPD 39
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y VL + TA+ +IK AY+ LA+ +HPD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPD 48
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y +L +P+A I ++K Y+ L +YHPD
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPD 41
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y +L +P+A + ++K Y+ L +YHPD
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPD 47
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
G Y+ L L A+ EIK AYR A YHPD
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPD 34
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
+LY++L + TAT +IK AY +YHPD
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPD 48
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
S YE+L + +A+ +IK AYR A +HPD
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPD 33
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 7 GTGGS-----LYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
G+ GS YEVL + A+ IK AYR LA +HPD
Sbjct: 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPD 40
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
+++L ++P A+ E+ AYR LA + HPD
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y++L + +A+ +IK A+ LA YHPD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPD 38
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
+ Y +L + TA+ EI+ A++ LA HPD
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPD 33
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y++L ++ A EI AYR LA +HPD
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 13 YEVLRLEPTATILEIKMAYRSLAKVYHPD 41
Y++L ++ A EI AYR LA +HPD
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41
+ Y +L + TA+ EI+ A++ LA HPD
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPD 52
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 66 GQSGFHPARKWETDQCW 82
G G++ + KW+ D CW
Sbjct: 268 GPKGYYGSSKWQDDYCW 284
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 6 PGTGGSLYEVLRLEPTATILEIKMAYR 32
PG S+Y +LR +P T+ EI+ A++
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQ 143
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 6 PGTGGSLYEVLRLEPTATILEIKMAYR 32
PG S+Y +LR +P T+ EI+ A++
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQ 143
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 6 PGTGGSLYEVLRLEPTATILEIKMAYR 32
PG S+Y +LR +P T+ EI+ A++
Sbjct: 117 PGIVMSMYTLLRNQPEPTVEEIENAFQ 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,496,898
Number of Sequences: 62578
Number of extensions: 74901
Number of successful extensions: 137
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 29
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)