Query 045017
Match_columns 82
No_of_seqs 125 out of 1366
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.7 5.8E-18 1.3E-22 126.0 6.1 47 8-54 2-73 (371)
2 KOG0713 Molecular chaperone (D 99.6 2.1E-16 4.5E-21 116.2 4.6 47 7-53 13-84 (336)
3 PRK14288 chaperone protein Dna 99.5 1.1E-14 2.3E-19 108.2 4.3 35 9-43 2-36 (369)
4 KOG0712 Molecular chaperone (D 99.5 1.7E-14 3.7E-19 106.5 5.0 46 8-53 2-69 (337)
5 PRK14296 chaperone protein Dna 99.5 2.4E-14 5.1E-19 106.5 4.3 44 9-52 3-70 (372)
6 PTZ00037 DnaJ_C chaperone prot 99.5 3.6E-14 7.8E-19 107.2 4.1 45 8-52 26-91 (421)
7 PRK14279 chaperone protein Dna 99.5 4.5E-14 9.8E-19 105.6 4.1 36 8-43 7-42 (392)
8 PRK14286 chaperone protein Dna 99.5 5.8E-14 1.3E-18 104.4 4.4 35 9-43 3-37 (372)
9 PRK14294 chaperone protein Dna 99.4 1.5E-13 3.2E-18 101.9 4.4 35 9-43 3-37 (366)
10 PRK14282 chaperone protein Dna 99.4 1.6E-13 3.5E-18 101.8 4.5 35 9-43 3-37 (369)
11 PRK14283 chaperone protein Dna 99.4 1.6E-13 3.5E-18 102.0 4.5 35 9-43 4-38 (378)
12 PRK14287 chaperone protein Dna 99.4 1.7E-13 3.7E-18 101.9 4.4 44 9-52 3-70 (371)
13 PRK14276 chaperone protein Dna 99.4 1.7E-13 3.7E-18 102.0 4.3 44 9-52 3-70 (380)
14 PRK14299 chaperone protein Dna 99.4 2E-13 4.2E-18 98.6 4.4 35 9-43 3-37 (291)
15 PRK14295 chaperone protein Dna 99.4 2.8E-13 6E-18 101.3 4.5 36 8-43 7-42 (389)
16 PRK14285 chaperone protein Dna 99.4 2.3E-13 5E-18 101.0 4.1 34 10-43 3-36 (365)
17 PRK10767 chaperone protein Dna 99.4 2.9E-13 6.3E-18 100.3 4.4 35 9-43 3-37 (371)
18 PRK14278 chaperone protein Dna 99.4 3.5E-13 7.6E-18 100.4 4.5 34 10-43 3-36 (378)
19 PRK14291 chaperone protein Dna 99.4 3.3E-13 7.2E-18 100.6 4.3 35 9-43 2-36 (382)
20 PRK14298 chaperone protein Dna 99.4 2.8E-13 6.1E-18 100.9 3.8 35 9-43 4-38 (377)
21 PRK14301 chaperone protein Dna 99.4 3.2E-13 7E-18 100.4 4.1 35 9-43 3-37 (373)
22 PRK14280 chaperone protein Dna 99.4 4.1E-13 8.8E-18 99.9 4.4 44 9-52 3-70 (376)
23 PRK14277 chaperone protein Dna 99.4 4.2E-13 9.1E-18 100.1 4.4 35 9-43 4-38 (386)
24 PF00226 DnaJ: DnaJ domain; I 99.4 3.5E-13 7.6E-18 77.0 3.1 33 11-43 1-33 (64)
25 KOG0719 Molecular chaperone (D 99.4 3.6E-13 7.9E-18 95.6 3.7 43 1-43 5-47 (264)
26 PRK14284 chaperone protein Dna 99.4 4.1E-13 8.9E-18 100.3 4.1 34 10-43 1-34 (391)
27 PRK14297 chaperone protein Dna 99.4 3.8E-13 8.2E-18 100.1 3.7 35 9-43 3-37 (380)
28 KOG0715 Molecular chaperone (D 99.4 6.6E-13 1.4E-17 96.2 4.5 45 10-54 43-111 (288)
29 cd06257 DnaJ DnaJ domain or J- 99.4 6.7E-13 1.4E-17 73.4 3.4 33 11-43 1-33 (55)
30 PRK14281 chaperone protein Dna 99.4 6.1E-13 1.3E-17 99.6 4.1 34 10-43 3-36 (397)
31 KOG0691 Molecular chaperone (D 99.4 6.2E-13 1.4E-17 96.9 4.0 46 9-54 4-74 (296)
32 smart00271 DnaJ DnaJ molecular 99.3 9.6E-13 2.1E-17 74.0 3.4 34 10-43 1-34 (60)
33 PRK10266 curved DNA-binding pr 99.3 1.2E-12 2.6E-17 95.0 4.3 34 10-43 4-37 (306)
34 KOG0721 Molecular chaperone (D 99.3 1.4E-12 3E-17 91.6 4.0 36 8-43 97-132 (230)
35 PRK14300 chaperone protein Dna 99.3 1.4E-12 2.9E-17 97.0 4.0 34 10-43 3-36 (372)
36 PRK14289 chaperone protein Dna 99.3 1.6E-12 3.6E-17 96.8 4.4 35 9-43 4-38 (386)
37 TIGR02349 DnaJ_bact chaperone 99.3 1.9E-12 4.1E-17 95.3 3.9 33 11-43 1-33 (354)
38 PRK14290 chaperone protein Dna 99.3 2.1E-12 4.5E-17 95.8 3.9 34 10-43 3-36 (365)
39 PRK14293 chaperone protein Dna 99.3 3.7E-12 8E-17 94.7 4.4 34 10-43 3-36 (374)
40 PRK14292 chaperone protein Dna 99.3 3.1E-12 6.8E-17 94.9 3.8 34 10-43 2-35 (371)
41 KOG0624 dsRNA-activated protei 99.2 8.1E-12 1.8E-16 93.8 4.3 36 8-43 392-427 (504)
42 KOG0717 Molecular chaperone (D 99.2 5.2E-12 1.1E-16 96.3 3.3 38 6-43 4-41 (508)
43 KOG0716 Molecular chaperone (D 99.2 5.2E-12 1.1E-16 91.0 3.0 36 8-43 29-64 (279)
44 PTZ00341 Ring-infected erythro 99.2 1.1E-11 2.3E-16 101.2 4.5 48 6-53 569-640 (1136)
45 PTZ00100 DnaJ chaperone protei 99.1 3.8E-11 8.2E-16 77.4 3.7 37 7-43 62-98 (116)
46 PHA03102 Small T antigen; Revi 99.1 5.3E-11 1.2E-15 79.8 3.2 34 10-43 5-40 (153)
47 COG2214 CbpA DnaJ-class molecu 99.1 8.9E-11 1.9E-15 77.8 3.2 37 7-43 3-39 (237)
48 TIGR03835 termin_org_DnaJ term 99.1 2E-10 4.2E-15 92.2 4.9 34 10-43 2-35 (871)
49 PRK09430 djlA Dna-J like membr 99.0 2.3E-10 5E-15 82.2 3.1 37 7-43 197-233 (267)
50 KOG0718 Molecular chaperone (D 99.0 2.5E-10 5.5E-15 87.5 3.5 37 7-43 6-42 (546)
51 KOG0722 Molecular chaperone (D 98.9 5.7E-10 1.2E-14 80.7 2.7 37 7-43 30-66 (329)
52 PRK01356 hscB co-chaperone Hsc 98.9 1.6E-09 3.6E-14 73.2 4.1 34 10-43 2-37 (166)
53 PRK05014 hscB co-chaperone Hsc 98.9 2.1E-09 4.5E-14 72.9 4.1 34 10-43 1-36 (171)
54 PRK03578 hscB co-chaperone Hsc 98.8 4.3E-09 9.4E-14 71.8 4.6 35 9-43 5-41 (176)
55 KOG0720 Molecular chaperone (D 98.8 1.9E-09 4.1E-14 82.4 2.7 35 9-43 234-268 (490)
56 PRK00294 hscB co-chaperone Hsc 98.8 8.4E-09 1.8E-13 70.2 4.8 36 8-43 2-39 (173)
57 PHA02624 large T antigen; Prov 98.7 9E-09 2E-13 81.3 3.1 43 9-51 10-63 (647)
58 KOG0550 Molecular chaperone (D 98.6 1.6E-08 3.4E-13 77.1 1.8 35 9-43 372-406 (486)
59 KOG0714 Molecular chaperone (D 98.6 3.4E-08 7.3E-13 68.4 2.8 35 9-43 2-36 (306)
60 COG5407 SEC63 Preprotein trans 98.5 3.2E-08 6.9E-13 76.2 2.0 35 9-43 97-131 (610)
61 KOG1150 Predicted molecular ch 98.4 1.8E-07 4E-12 65.7 2.3 35 9-43 52-86 (250)
62 PRK01773 hscB co-chaperone Hsc 98.3 9.6E-07 2.1E-11 60.2 4.0 34 10-43 2-37 (173)
63 KOG1789 Endocytosis protein RM 97.9 1.3E-05 2.8E-10 67.4 3.7 43 7-49 1278-1327(2235)
64 KOG0723 Molecular chaperone (D 97.5 0.00016 3.6E-09 46.1 3.9 30 14-43 60-89 (112)
65 KOG0568 Molecular chaperone (D 97.5 7E-05 1.5E-09 54.1 2.3 34 10-43 47-80 (342)
66 COG5269 ZUO1 Ribosome-associat 97.4 6.3E-05 1.4E-09 55.4 1.6 35 9-43 42-79 (379)
67 TIGR00714 hscB Fe-S protein as 97.4 0.00026 5.7E-09 47.4 3.9 23 21-43 2-24 (157)
68 COG1076 DjlA DnaJ-domain-conta 96.3 0.0014 2.9E-08 44.3 0.6 34 10-43 113-146 (174)
69 KOG0431 Auxilin-like protein a 95.5 0.0077 1.7E-07 46.5 1.8 26 18-43 396-421 (453)
70 PF03656 Pam16: Pam16; InterP 93.3 0.084 1.8E-06 34.5 2.6 33 11-43 59-91 (127)
71 PF11833 DUF3353: Protein of u 91.1 0.26 5.7E-06 34.2 3.0 35 19-53 1-40 (194)
72 PF13446 RPT: A repeated domai 89.2 0.41 8.9E-06 26.8 2.3 31 10-41 5-35 (62)
73 PF14687 DUF4460: Domain of un 74.1 3.3 7.3E-05 26.3 2.4 24 20-43 4-27 (112)
74 KOG3192 Mitochondrial J-type c 73.1 3.2 6.9E-05 28.4 2.2 37 7-43 5-43 (168)
75 COG1076 DjlA DnaJ-domain-conta 66.4 3.1 6.7E-05 27.9 1.0 33 11-43 2-36 (174)
76 PF10041 DUF2277: Uncharacteri 62.7 27 0.0006 21.0 4.5 42 10-51 3-49 (78)
77 PF12434 Malate_DH: Malate deh 61.5 14 0.00031 18.0 2.6 18 23-40 9-26 (28)
78 PF15178 TOM_sub5: Mitochondri 60.8 17 0.00037 20.0 3.1 25 13-37 2-26 (51)
79 KOG3442 Uncharacterized conser 51.3 20 0.00043 23.6 2.8 32 12-43 61-92 (132)
80 cd01780 PLC_epsilon_RA Ubiquit 50.1 29 0.00063 21.6 3.3 37 7-43 8-44 (93)
81 PF09938 DUF2170: Uncharacteri 50.0 21 0.00044 23.7 2.8 29 8-36 97-126 (140)
82 COG5552 Uncharacterized conser 49.7 23 0.00049 21.5 2.7 35 9-43 2-40 (88)
83 COG0089 RplW Ribosomal protein 44.8 27 0.00059 21.7 2.6 20 15-34 25-44 (94)
84 CHL00030 rpl23 ribosomal prote 40.3 36 0.00078 20.9 2.6 20 15-34 23-42 (93)
85 PF12294 DUF3626: Protein of u 36.9 11 0.00023 28.1 -0.2 10 34-43 2-11 (297)
86 TIGR03636 L23_arch archaeal ri 36.6 46 0.001 19.7 2.6 20 15-34 18-37 (77)
87 PRK05738 rplW 50S ribosomal pr 34.2 52 0.0011 20.0 2.6 20 15-34 24-43 (92)
88 PF00076 RRM_1: RNA recognitio 32.0 47 0.001 17.4 2.0 20 15-34 3-22 (70)
89 PRK14548 50S ribosomal protein 29.9 68 0.0015 19.3 2.6 20 15-34 25-44 (84)
90 PF00276 Ribosomal_L23: Riboso 25.9 89 0.0019 18.8 2.7 20 15-34 24-43 (91)
91 smart00362 RRM_2 RNA recogniti 25.3 88 0.0019 15.7 2.3 20 15-34 4-23 (72)
92 PF08447 PAS_3: PAS fold; Int 24.4 8.9 0.00019 21.5 -1.9 30 10-43 6-36 (91)
93 PF03820 Mtc: Tricarboxylate c 24.1 85 0.0019 23.3 2.7 25 19-43 45-69 (308)
94 KOG1957 DNA topoisomerase III 23.5 80 0.0017 25.3 2.6 30 21-53 147-183 (555)
95 smart00335 ANX Annexin repeats 23.5 30 0.00066 18.0 0.2 23 13-35 8-30 (53)
96 KOG3767 Sideroflexin [General 21.9 1E+02 0.0022 23.4 2.7 31 13-43 57-87 (328)
97 PLN02560 enoyl-CoA reductase 20.9 52 0.0011 24.3 1.1 35 14-48 16-50 (308)
98 COG2879 Uncharacterized small 20.8 83 0.0018 18.3 1.7 14 30-43 27-40 (65)
99 smart00360 RRM RNA recognition 20.2 1.1E+02 0.0025 15.2 2.1 20 16-35 2-21 (71)
100 cd00590 RRM RRM (RNA recogniti 20.1 1.3E+02 0.0029 15.1 2.4 20 15-34 4-23 (74)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.8e-18 Score=126.04 Aligned_cols=47 Identities=43% Similarity=0.524 Sum_probs=44.0
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc-------------------------hHHHhhhcccc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV-------------------------GAVYDMTLVSR 54 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~-------------------------r~~yD~~~~~~ 54 (82)
..+|||+||||+++|+.+|||+|||+||++||||+| |++||+++...
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 458999999999999999999999999999999999 99999988664
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.1e-16 Score=116.18 Aligned_cols=47 Identities=40% Similarity=0.485 Sum_probs=44.0
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc-------------------------hHHHhhhccc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV-------------------------GAVYDMTLVS 53 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~-------------------------r~~yD~~~~~ 53 (82)
...+|||+||||+++|+..|||+|||+||+++||||| |+.||..+..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 4569999999999999999999999999999999999 9999998854
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.1e-14 Score=108.19 Aligned_cols=35 Identities=43% Similarity=0.572 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~ 36 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN 36 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 47999999999999999999999999999999998
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-14 Score=106.45 Aligned_cols=46 Identities=41% Similarity=0.590 Sum_probs=43.1
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc----------------------hHHHhhhccc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV----------------------GAVYDMTLVS 53 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~----------------------r~~yD~~~~~ 53 (82)
....||+||||+++|+.+|||+|||+||++|||||| |+.||+.+..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 357899999999999999999999999999999999 9999998865
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.4e-14 Score=106.50 Aligned_cols=44 Identities=45% Similarity=0.591 Sum_probs=41.4
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhcc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLV 52 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~ 52 (82)
..|||+||||+++|+.+|||+|||+||++||||+| |+.||+.+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 47999999999999999999999999999999998 999998764
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.47 E-value=3.6e-14 Score=107.22 Aligned_cols=45 Identities=44% Similarity=0.499 Sum_probs=41.8
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc---------------------hHHHhhhcc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV---------------------GAVYDMTLV 52 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~---------------------r~~yD~~~~ 52 (82)
...|||+||||+++|+.+|||+|||+||++||||++ |+.||+.+.
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 468999999999999999999999999999999998 899998764
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.5e-14 Score=105.60 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=34.5
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
...|||+||||+++|+.+|||+|||+||++||||++
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~ 42 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN 42 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 358999999999999999999999999999999998
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.8e-14 Score=104.36 Aligned_cols=35 Identities=46% Similarity=0.608 Sum_probs=33.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~ 37 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN 37 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 47999999999999999999999999999999997
No 9
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.5e-13 Score=101.87 Aligned_cols=35 Identities=43% Similarity=0.593 Sum_probs=34.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~ 37 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN 37 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 47999999999999999999999999999999998
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.6e-13 Score=101.79 Aligned_cols=35 Identities=43% Similarity=0.591 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~ 37 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH 37 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 47999999999999999999999999999999997
No 11
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.6e-13 Score=102.05 Aligned_cols=35 Identities=49% Similarity=0.719 Sum_probs=34.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||+|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~ 38 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS 38 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 58999999999999999999999999999999997
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=1.7e-13 Score=101.87 Aligned_cols=44 Identities=43% Similarity=0.609 Sum_probs=41.2
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhcc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLV 52 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~ 52 (82)
..|||+||||+++|+.+|||+|||+||+++|||+| |+.||+.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 47999999999999999999999999999999998 999998764
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=1.7e-13 Score=102.03 Aligned_cols=44 Identities=41% Similarity=0.554 Sum_probs=41.2
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhcc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLV 52 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~ 52 (82)
..|||+||||+++|+.+|||+|||+||++||||++ |+.||+.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 47999999999999999999999999999999997 999998764
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2e-13 Score=98.64 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=33.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+|++++|||++
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~ 37 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVN 37 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 47999999999999999999999999999999998
No 15
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.8e-13 Score=101.32 Aligned_cols=36 Identities=47% Similarity=0.633 Sum_probs=34.3
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
...|||+||||+++|+.+|||+|||+||++||||++
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~ 42 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN 42 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC
Confidence 357999999999999999999999999999999997
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.3e-13 Score=100.95 Aligned_cols=34 Identities=47% Similarity=0.625 Sum_probs=33.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+|+++||||++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~ 36 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN 36 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 7999999999999999999999999999999998
No 17
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=2.9e-13 Score=100.34 Aligned_cols=35 Identities=49% Similarity=0.604 Sum_probs=33.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~ 37 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN 37 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 47999999999999999999999999999999997
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.5e-13 Score=100.38 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=33.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~ 36 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN 36 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 7999999999999999999999999999999998
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=3.3e-13 Score=100.55 Aligned_cols=35 Identities=51% Similarity=0.762 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.++||+|||+||++||||+|
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 36 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFN 36 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 37999999999999999999999999999999998
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=2.8e-13 Score=100.91 Aligned_cols=35 Identities=46% Similarity=0.677 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~ 38 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN 38 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCcccc
Confidence 47999999999999999999999999999999998
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=3.2e-13 Score=100.42 Aligned_cols=35 Identities=49% Similarity=0.596 Sum_probs=33.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.++||+|||+||+++|||++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 37 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN 37 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC
Confidence 47999999999999999999999999999999998
No 22
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.1e-13 Score=99.91 Aligned_cols=44 Identities=45% Similarity=0.573 Sum_probs=41.2
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhcc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLV 52 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~ 52 (82)
..|||+||||+++|+.+|||+|||+|++++|||++ |+.||+.+.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 37999999999999999999999999999999997 999998764
No 23
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.2e-13 Score=100.14 Aligned_cols=35 Identities=51% Similarity=0.735 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~ 38 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN 38 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC
Confidence 47999999999999999999999999999999997
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.38 E-value=3.5e-13 Score=77.03 Aligned_cols=33 Identities=55% Similarity=0.768 Sum_probs=32.0
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 11 d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
|||+||||+++++.++|+++|+++++++|||++
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~ 33 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKN 33 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTG
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccc
Confidence 589999999999999999999999999999996
No 25
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.6e-13 Score=95.62 Aligned_cols=43 Identities=42% Similarity=0.396 Sum_probs=38.9
Q ss_pred CCCCCCCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 1 MPVTVPGTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 1 m~~~~~~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
|+++-+....|+|+||||..+|+.++|++||++|++++|||++
T Consensus 5 ~~~~~~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~ 47 (264)
T KOG0719|consen 5 EECTGSFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN 47 (264)
T ss_pred hhccccccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc
Confidence 4455566678999999999999999999999999999999999
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=4.1e-13 Score=100.33 Aligned_cols=34 Identities=47% Similarity=0.600 Sum_probs=32.9
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~ 34 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN 34 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4899999999999999999999999999999997
No 27
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=3.8e-13 Score=100.14 Aligned_cols=35 Identities=51% Similarity=0.615 Sum_probs=33.8
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||++||||++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 37 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN 37 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 37999999999999999999999999999999998
No 28
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.6e-13 Score=96.25 Aligned_cols=45 Identities=42% Similarity=0.623 Sum_probs=42.0
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhcccc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLVSR 54 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~~~ 54 (82)
.|||+||||+++|+..|||.||++|++++|||.| |+.||..+...
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 4999999999999999999999999999999999 99999888654
No 29
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.36 E-value=6.7e-13 Score=73.41 Aligned_cols=33 Identities=48% Similarity=0.716 Sum_probs=32.2
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 11 d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
|||+||||+++++.++|+++|+++++++|||++
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~ 33 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKN 33 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 699999999999999999999999999999987
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=6.1e-13 Score=99.64 Aligned_cols=34 Identities=50% Similarity=0.626 Sum_probs=33.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+|++++|||++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~ 36 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN 36 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC
Confidence 6999999999999999999999999999999998
No 31
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.2e-13 Score=96.88 Aligned_cols=46 Identities=41% Similarity=0.490 Sum_probs=43.4
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc-------------------------hHHHhhhcccc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV-------------------------GAVYDMTLVSR 54 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~-------------------------r~~yD~~~~~~ 54 (82)
..|||.||||+.+++.++|++||+..++++||||| |.+||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 78999999999999999999999999999999999 99999988653
No 32
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.34 E-value=9.6e-13 Score=74.02 Aligned_cols=34 Identities=47% Similarity=0.663 Sum_probs=32.8
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++++.++|+++|+++++++|||++
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~ 34 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKN 34 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4899999999999999999999999999999997
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.33 E-value=1.2e-12 Score=95.01 Aligned_cols=34 Identities=41% Similarity=0.778 Sum_probs=33.3
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~ 37 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS 37 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6999999999999999999999999999999988
No 34
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-12 Score=91.63 Aligned_cols=36 Identities=47% Similarity=0.634 Sum_probs=33.9
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..-|+||||||+++++..|||+|||+|++++||||+
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~ 132 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQ 132 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcC
Confidence 346999999999999999999999999999999995
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=1.4e-12 Score=97.02 Aligned_cols=34 Identities=41% Similarity=0.659 Sum_probs=33.2
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+|++++|||++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~ 36 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTT 36 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6999999999999999999999999999999987
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=1.6e-12 Score=96.84 Aligned_cols=35 Identities=51% Similarity=0.627 Sum_probs=34.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||+++|+.+|||+|||+||+++|||++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~ 38 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN 38 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 47999999999999999999999999999999998
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.30 E-value=1.9e-12 Score=95.34 Aligned_cols=33 Identities=52% Similarity=0.715 Sum_probs=32.4
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 11 d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
|||+||||+++|+.++||+|||+|++++|||++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~ 33 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN 33 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 799999999999999999999999999999998
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=2.1e-12 Score=95.76 Aligned_cols=34 Identities=38% Similarity=0.677 Sum_probs=33.3
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+|++++|||++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~ 36 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH 36 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6999999999999999999999999999999998
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.28 E-value=3.7e-12 Score=94.70 Aligned_cols=34 Identities=44% Similarity=0.685 Sum_probs=33.3
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.+|||+|||+|++++|||++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~ 36 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVN 36 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 6999999999999999999999999999999998
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=3.1e-12 Score=94.85 Aligned_cols=34 Identities=50% Similarity=0.624 Sum_probs=33.2
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.++||+|||+|++++|||++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~ 35 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRN 35 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 4899999999999999999999999999999999
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=8.1e-12 Score=93.77 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=34.0
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..+|||+||||.++|+..||.+|||++|.++|||..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccc
Confidence 458999999999999999999999999999999966
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.2e-12 Score=96.33 Aligned_cols=38 Identities=47% Similarity=0.549 Sum_probs=35.6
Q ss_pred CCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 6 PGTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 6 ~~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
+...+.||+||||..+|+..+||++||+|||++|||+|
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn 41 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN 41 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 44568999999999999999999999999999999997
No 43
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.2e-12 Score=90.99 Aligned_cols=36 Identities=56% Similarity=0.623 Sum_probs=34.1
Q ss_pred CccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
...|+|+||||+++|+.++|||+||+|++++|||++
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~ 64 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKN 64 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcC
Confidence 356899999999999999999999999999999999
No 44
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.22 E-value=1.1e-11 Score=101.21 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc------------------------hHHHhhhccc
Q 045017 6 PGTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV------------------------GAVYDMTLVS 53 (82)
Q Consensus 6 ~~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~------------------------r~~yD~~~~~ 53 (82)
...+.+||+||||+++|+..+||+|||+||+++|||++ |+.||..+..
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 34568999999999999999999999999999999998 8899987654
No 45
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.15 E-value=3.8e-11 Score=77.35 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=34.3
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
+...++|+||||+++++.+||+++||+|++++|||+.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg 98 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG 98 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 3457999999999999999999999999999999986
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.11 E-value=5.3e-11 Score=79.79 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=32.6
Q ss_pred cCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTA--TILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..+|+||||+++| +.++||+|||++++++|||++
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg 40 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG 40 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 5689999999999 999999999999999999998
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.9e-11 Score=77.80 Aligned_cols=37 Identities=46% Similarity=0.636 Sum_probs=34.8
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
....+||+||||+++|+..||+++||++++++|||++
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~ 39 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN 39 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 3457999999999999999999999999999999998
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.05 E-value=2e-10 Score=92.20 Aligned_cols=34 Identities=50% Similarity=0.689 Sum_probs=33.1
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||+++|+.++||++||+|++++|||++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn 35 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN 35 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 6999999999999999999999999999999997
No 49
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.00 E-value=2.3e-10 Score=82.17 Aligned_cols=37 Identities=38% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
....++|+||||+++++.++||++||+|+++||||++
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~ 233 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKL 233 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCC
Confidence 3447999999999999999999999999999999994
No 50
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-10 Score=87.51 Aligned_cols=37 Identities=43% Similarity=0.554 Sum_probs=34.7
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..+.|||.+|+|+++|+.+||++|||++++.|||||.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh 42 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKH 42 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCccc
Confidence 3456999999999999999999999999999999998
No 51
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.7e-10 Score=80.68 Aligned_cols=37 Identities=38% Similarity=0.461 Sum_probs=34.9
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
....|.|+||||.+.++..||.+|||+||++||||++
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~ 66 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRN 66 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCccc
Confidence 3557999999999999999999999999999999999
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.90 E-value=1.6e-09 Score=73.19 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=32.0
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||++|||++. ++..+|+++|+++++++|||++
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~ 37 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKA 37 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 589999999986 7899999999999999999996
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.88 E-value=2.1e-09 Score=72.93 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=31.4
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||+||||++. ++..+|+++|+++++++|||+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~ 36 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKF 36 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCC
Confidence 389999999996 7889999999999999999985
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.84 E-value=4.3e-09 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.4
Q ss_pred ccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|||+||||++. ++..+|+++|+++++++|||++
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~ 41 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRF 41 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3799999999985 6899999999999999999987
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.9e-09 Score=82.42 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=34.3
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|+|.+|||+++++.++||+.||++|...|||||
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn 268 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKN 268 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCcc
Confidence 68999999999999999999999999999999999
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.79 E-value=8.4e-09 Score=70.24 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=33.1
Q ss_pred CccCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 8 TGGSLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 8 ~~~d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
...+||++|||++. .+..+|+++|+++++++|||+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~ 39 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRF 39 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 45899999999996 6789999999999999999996
No 57
>PHA02624 large T antigen; Provisional
Probab=98.71 E-value=9e-09 Score=81.31 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=38.0
Q ss_pred ccCccceeccCCCC--CHHHHHHHHHHHHHHhCCCCc---------hHHHhhhc
Q 045017 9 GGSLYEVLRLEPTA--TILEIKMAYRSLAKVYHPDFV---------GAVYDMTL 51 (82)
Q Consensus 9 ~~d~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~---------r~~yD~~~ 51 (82)
..++|++|||+++| +.++||+|||++++++|||+. ..+|+...
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~ 63 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQ 63 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999 999999999999999999997 55665554
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.6e-08 Score=77.09 Aligned_cols=35 Identities=43% Similarity=0.517 Sum_probs=33.9
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
-.|||+||||..+++..|||++||++++.+|||++
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 46999999999999999999999999999999999
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.4e-08 Score=68.38 Aligned_cols=35 Identities=43% Similarity=0.663 Sum_probs=33.4
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|+|+||+|.+.|+..+|++||+++++++|||++
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~ 36 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN 36 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999999997
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.54 E-value=3.2e-08 Score=76.22 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=33.5
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.-|+||||||+.+++..+||++||+|+.|+||||.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~ 131 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKA 131 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhc
Confidence 35999999999999999999999999999999998
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-07 Score=65.74 Aligned_cols=35 Identities=37% Similarity=0.555 Sum_probs=33.7
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.-++|+||.|.|..+.++||+.||+|++..|||+|
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN 86 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN 86 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC
Confidence 36899999999999999999999999999999999
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.28 E-value=9.6e-07 Score=60.17 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred cCccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.|||++|||++. .+...|++.|+++.+++|||+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f 37 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNF 37 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcc
Confidence 689999999985 8999999999999999999987
No 63
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.3e-05 Score=67.41 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=34.7
Q ss_pred CCccCccceeccCC----CCCHHHHHHHHHHHHHHhCCCCc---hHHHhh
Q 045017 7 GTGGSLYEVLRLEP----TATILEIKMAYRSLAKVYHPDFV---GAVYDM 49 (82)
Q Consensus 7 ~~~~d~y~iLgv~~----~a~~~~Ik~ayr~l~~~~HPDk~---r~~yD~ 49 (82)
++..+.|+||.|+- ....++||++|++||.+|||||| |..|..
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~ 1327 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFER 1327 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 45578899999984 45568999999999999999999 555443
No 64
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00016 Score=46.13 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=29.0
Q ss_pred ceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 14 EVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.||||.+.++.+.||.++|++.+..|||+.
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G 89 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG 89 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC
Confidence 499999999999999999999999999998
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=7e-05 Score=54.13 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=32.4
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..+|.||||..+++..+++.+|..|++++|||..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsg 80 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSG 80 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCC
Confidence 4689999999999999999999999999999987
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.3e-05 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=32.3
Q ss_pred ccCccceeccCC---CCCHHHHHHHHHHHHHHhCCCCc
Q 045017 9 GGSLYEVLRLEP---TATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..|+|.+|||+. .++...|.++.++.+.+||||+.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~ 79 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKT 79 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccch
Confidence 479999999995 78899999999999999999998
No 67
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.37 E-value=0.00026 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCc
Q 045017 21 TATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
..+..+|+++|+++++++|||+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~ 24 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKF 24 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999984
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0014 Score=44.35 Aligned_cols=34 Identities=38% Similarity=0.400 Sum_probs=32.5
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.+.|++||+...++..+|+++|+++..++|||+-
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 6889999999999999999999999999999976
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.51 E-value=0.0077 Score=46.49 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 18 LEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 18 v~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
+..-.+.+.||++||+.+|..||||.
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccc
Confidence 34456889999999999999999998
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.28 E-value=0.084 Score=34.48 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=25.7
Q ss_pred CccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 11 SLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 11 d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.-.+||+|++..+.++|.+.|..|-...+|++.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG 91 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG 91 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC
Confidence 446799999999999999999999999999988
No 71
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=91.08 E-value=0.26 Score=34.16 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCc-----hHHHhhhccc
Q 045017 19 EPTATILEIKMAYRSLAKVYHPDFV-----GAVYDMTLVS 53 (82)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~HPDk~-----r~~yD~~~~~ 53 (82)
+++|+.+||+.|+.++..+|--|.. -.+||..+..
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999977766 7889987755
No 72
>PF13446 RPT: A repeated domain in UCH-protein
Probab=89.19 E-value=0.41 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.5
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCCC
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHPD 41 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD 41 (82)
.+.|++|||+++.+...|..+|+.... -.|+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P~ 35 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDPS 35 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cChH
Confidence 567999999999999999999998876 4454
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=74.12 E-value=3.3 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 20 PTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 20 ~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
...+..+++.|.|..-++.|||..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF 27 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLF 27 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCccc
Confidence 345678899999999999999966
No 74
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=73.11 E-value=3.2 Score=28.37 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCccCccceeccC--CCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLE--PTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~--~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
....+||.++|.. ...+...+..-|....++.|||+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~ 43 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRP 43 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccc
Confidence 4567999999755 456677777799999999999994
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.42 E-value=3.1 Score=27.93 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=26.0
Q ss_pred CccceeccCCC--CCHHHHHHHHHHHHHHhCCCCc
Q 045017 11 SLYEVLRLEPT--ATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 11 d~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
+++.++|..+. .+.+.++..|+.+.+.+|||+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~ 36 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRF 36 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccc
Confidence 45666666653 4567789999999999999998
No 76
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=62.65 E-value=27 Score=21.01 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=31.6
Q ss_pred cCccceeccCCCCCHHHHHHHHHHHHHHhCC----CC-chHHHhhhc
Q 045017 10 GSLYEVLRLEPTATILEIKMAYRSLAKVYHP----DF-VGAVYDMTL 51 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HP----Dk-~r~~yD~~~ 51 (82)
++--.+.|+.|-++.+||..|=.+.++|..- .+ |+.+||+..
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV 49 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAV 49 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHH
Confidence 4555677889999999999999988888743 32 277777643
No 77
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=61.49 E-value=14 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 045017 23 TILEIKMAYRSLAKVYHP 40 (82)
Q Consensus 23 ~~~~Ik~ayr~l~~~~HP 40 (82)
..++.+.+-|+.++.||.
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788899999999994
No 78
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=60.84 E-value=17 Score=20.00 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.0
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHH
Q 045017 13 YEVLRLEPTATILEIKMAYRSLAKV 37 (82)
Q Consensus 13 y~iLgv~~~a~~~~Ik~ayr~l~~~ 37 (82)
|.+=|+.|..+.+|.|+..|+-++.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvis 26 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVIS 26 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHH
Confidence 5677999999999999999887653
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.33 E-value=20 Score=23.63 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.7
Q ss_pred ccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 12 LYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 12 ~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
--+||+|+...+.++|.+.|..|-...-+.+.
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskG 92 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKG 92 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccC
Confidence 34799999999999999999999888766665
No 80
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=50.10 E-value=29 Score=21.61 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCccCccceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 7 GTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 7 ~~~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
.....+|.||.++...+..+|-+.=...|++-+||-+
T Consensus 8 vs~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 8 VSPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 4567899999999999988887777777788788865
No 81
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=50.04 E-value=21 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=22.7
Q ss_pred CccCccceec-cCCCCCHHHHHHHHHHHHH
Q 045017 8 TGGSLYEVLR-LEPTATILEIKMAYRSLAK 36 (82)
Q Consensus 8 ~~~d~y~iLg-v~~~a~~~~Ik~ayr~l~~ 36 (82)
...+||.++| ++...+.++|-.--..|+-
T Consensus 97 ~g~~~Yv~FGALS~~S~l~~I~~Ei~tLa~ 126 (140)
T PF09938_consen 97 DGEDYYVAFGALSAQSSLEDIVIEIETLAD 126 (140)
T ss_pred cCcEEEEEeeeecccCCHHHHHHHHHHHHH
Confidence 7789999999 7888888877766665543
No 82
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=49.70 E-value=23 Score=21.47 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=28.0
Q ss_pred ccCccceeccCCCCCHHHHHHHHHHHHHHh----CCCCc
Q 045017 9 GGSLYEVLRLEPTATILEIKMAYRSLAKVY----HPDFV 43 (82)
Q Consensus 9 ~~d~y~iLgv~~~a~~~~Ik~ayr~l~~~~----HPDk~ 43 (82)
+++.-+++++.|-++..||+.|-++.++|. ||...
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~ 40 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAA 40 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchh
Confidence 355567889999999999999987777765 77765
No 83
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=44.83 E-value=27 Score=21.66 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=18.1
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
+|-|+++|+..+||+|..++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999999877
No 84
>CHL00030 rpl23 ribosomal protein L23
Probab=40.33 E-value=36 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.188 Sum_probs=17.8
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
++-|+++|+..|||+|..++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57799999999999999776
No 85
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=36.90 E-value=11 Score=28.09 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=8.1
Q ss_pred HHHHhCCCCc
Q 045017 34 LAKVYHPDFV 43 (82)
Q Consensus 34 l~~~~HPDk~ 43 (82)
..+.+|||+.
T Consensus 2 vtl~fhpdr~ 11 (297)
T PF12294_consen 2 VTLNFHPDRL 11 (297)
T ss_pred cccccCCCCc
Confidence 4678999976
No 86
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.60 E-value=46 Score=19.71 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=17.7
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
++-|+++|+..|||+|-.++
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998876
No 87
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.18 E-value=52 Score=19.99 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=17.6
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
++-|++.|+..|||++..++
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57789999999999998876
No 88
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.01 E-value=47 Score=17.39 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.4
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
|-+|+++.+.++|+..+.+.
T Consensus 3 v~nlp~~~t~~~l~~~f~~~ 22 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQF 22 (70)
T ss_dssp EESETTTSSHHHHHHHHHTT
T ss_pred EcCCCCcCCHHHHHHHHHHh
Confidence 45789999999999888764
No 89
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.93 E-value=68 Score=19.34 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.7
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
.+-|++.|+..+||+|-.++
T Consensus 25 ~F~V~~~anK~eIK~AvE~l 44 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEEL 44 (84)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998877
No 90
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.88 E-value=89 Score=18.76 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.6
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
.+-|+++|+..+||.+..++
T Consensus 24 tF~V~~~atK~~Ik~aie~i 43 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKI 43 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhh
Confidence 57799999999999998776
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=25.29 E-value=88 Score=15.75 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.3
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
|-||+...+.++|+..+.+.
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 56788899999999888754
No 92
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=24.42 E-value=8.9 Score=21.50 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=18.1
Q ss_pred cCccceeccCCCCCHHHH-HHHHHHHHHHhCCCCc
Q 045017 10 GSLYEVLRLEPTATILEI-KMAYRSLAKVYHPDFV 43 (82)
Q Consensus 10 ~d~y~iLgv~~~a~~~~I-k~ayr~l~~~~HPDk~ 43 (82)
..++++||+++ +++ ...........|||-.
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 45677888765 444 4445556777888865
No 93
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.05 E-value=85 Score=23.31 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 19 EPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
+++.+.++|.+|.+-.--.+|||..
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCC
Confidence 3456899999999999999999987
No 94
>KOG1957 consensus DNA topoisomerase III beta [Replication, recombination and repair]
Probab=23.50 E-value=80 Score=25.28 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCc-------hHHHhhhccc
Q 045017 21 TATILEIKMAYRSLAKVYHPDFV-------GAVYDMTLVS 53 (82)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~HPDk~-------r~~yD~~~~~ 53 (82)
..+.++|++|.+.|. |||.| |+.-|..+..
T Consensus 147 aitekdi~~am~~lg---~p~~nea~svdarqeldlrild 183 (555)
T KOG1957|consen 147 AITEKDIKKAMRNLG---EPDQNEALSVDARQELDLRILD 183 (555)
T ss_pred cccHHHHHHHHHhcC---CCCcchhcccchhhhhhhhhhh
Confidence 457899999998885 89999 8888866644
No 95
>smart00335 ANX Annexin repeats.
Probab=23.49 E-value=30 Score=18.03 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=17.0
Q ss_pred cceeccCCCCCHHHHHHHHHHHH
Q 045017 13 YEVLRLEPTATILEIKMAYRSLA 35 (82)
Q Consensus 13 y~iLgv~~~a~~~~Ik~ayr~l~ 35 (82)
-+||.-.......+|+.+|+.+-
T Consensus 8 ~~il~~rs~~~~~~i~~~Y~~~~ 30 (53)
T smart00335 8 IEILASRSNAQLQAIKQAYKKRY 30 (53)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 35566667778889999997763
No 96
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=21.91 E-value=1e+02 Score=23.36 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.7
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHHhCCCCc
Q 045017 13 YEVLRLEPTATILEIKMAYRSLAKVYHPDFV 43 (82)
Q Consensus 13 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 43 (82)
|+-=.++++.+.++|-+|.+..---+|||..
T Consensus 57 yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 57 YKAGKVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred hccCCcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 3334567778899999999999999999988
No 97
>PLN02560 enoyl-CoA reductase
Probab=20.87 E-value=52 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=27.5
Q ss_pred ceeccCCCCCHHHHHHHHHHHHHHhCCCCchHHHh
Q 045017 14 EVLRLEPTATILEIKMAYRSLAKVYHPDFVGAVYD 48 (82)
Q Consensus 14 ~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~r~~yD 48 (82)
..|.|+++++.++||++.-+....+.|++.|-.|+
T Consensus 16 ~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~ 50 (308)
T PLN02560 16 GGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP 50 (308)
T ss_pred eeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence 46889999999999999887766667777766653
No 98
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.85 E-value=83 Score=18.29 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCCc
Q 045017 30 AYRSLAKVYHPDFV 43 (82)
Q Consensus 30 ayr~l~~~~HPDk~ 43 (82)
.|.+-.++.|||+.
T Consensus 27 nYVehmr~~hPd~p 40 (65)
T COG2879 27 NYVEHMRKKHPDKP 40 (65)
T ss_pred HHHHHHHHhCcCCC
Confidence 35666789999999
No 99
>smart00360 RRM RNA recognition motif.
Probab=20.21 E-value=1.1e+02 Score=15.15 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.6
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 045017 16 LRLEPTATILEIKMAYRSLA 35 (82)
Q Consensus 16 Lgv~~~a~~~~Ik~ayr~l~ 35 (82)
-||+...+.++|+..+.+..
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999998887653
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=20.13 E-value=1.3e+02 Score=15.08 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.6
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 045017 15 VLRLEPTATILEIKMAYRSL 34 (82)
Q Consensus 15 iLgv~~~a~~~~Ik~ayr~l 34 (82)
|-||+...+.++|+..+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 56888899999999888775
Done!