BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045019
(248 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297793491|ref|XP_002864630.1| hypothetical protein ARALYDRAFT_919168 [Arabidopsis lyrata subsp.
lyrata]
gi|297310465|gb|EFH40889.1| hypothetical protein ARALYDRAFT_919168 [Arabidopsis lyrata subsp.
lyrata]
Length = 233
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 125/228 (54%), Gaps = 26/228 (11%)
Query: 33 NVPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKR------GTIREHKSENLATTNGT 86
+ PPDPLL SG FI +A T D +SK+R G +S + NGT
Sbjct: 8 DFPPDPLLASGAFISSAGDGTL--------DSSSKRRPIQGGIGVSGSGESVRIGMANGT 59
Query: 87 E--------SALTPETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138
+ S+ E+ S +R + WLPPGW +ED++RTSGATAG+VDKYY+ +GR
Sbjct: 60 DQVNPSPDSSSHQAESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGR 119
Query: 139 RFRSKKEVLYFLETGT-KRKRRKENSNADMDSS---GSAAGSTKQKKPNIKAKTSALNFD 194
+FRS+ EVLY+LE GT KR K+ N D S G + ++K L+FD
Sbjct: 120 KFRSRTEVLYYLEHGTSKRGGTKKVENTDFLSDHFEGQGSNRARRKAKEPPPPPPPLDFD 179
Query: 195 YFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSN 242
+ N PE V W + E +W P IG V+V +SVR+DW+ AFT +T N
Sbjct: 180 FKNPPEKVSWSMAKAGEEAWIPIIGDVKVQDSVRRDWSTAFTFITNRN 227
>gi|224106479|ref|XP_002314180.1| methyl binding domain protein [Populus trichocarpa]
gi|222850588|gb|EEE88135.1| methyl binding domain protein [Populus trichocarpa]
Length = 214
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 108/165 (65%), Gaps = 5/165 (3%)
Query: 85 GTESALTPETASTR--RLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
G + +TP A R T +WLPPGW +EDR+RTSGATAGTVDKYY ASGR+FRS
Sbjct: 50 GNQQPVTPVRAKRRSSETTIETSWLPPGWVVEDRIRTSGATAGTVDKYYIDPASGRKFRS 109
Query: 143 KKEVLYFLETGTKRKRRKENSNADMDSSGSAAGSTKQKKPNIKAKTS-ALNFDYFNSPEN 201
KK+V Y+LETGT +K+ K N+D D+ ++AG+ K K A TS ALNFD FN P+
Sbjct: 110 KKDVQYYLETGTLKKKGKLTENSDADT--NSAGNLKVDKNKSGANTSFALNFDSFNVPDR 167
Query: 202 VEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSK 246
EWVL + E +W PFI +VP ++ W AF LTTS++G +
Sbjct: 168 TEWVLANAKEDTWIPFIDGKKVPLYDKEQWDFAFASLTTSSHGKR 212
>gi|224059490|ref|XP_002299872.1| methyl binding domain protein [Populus trichocarpa]
gi|118483055|gb|ABK93437.1| unknown [Populus trichocarpa]
gi|222847130|gb|EEE84677.1| methyl binding domain protein [Populus trichocarpa]
Length = 214
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 125/236 (52%), Gaps = 36/236 (15%)
Query: 15 PNLHKPEPKESVNLFSTVNVPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIRE 74
P ++ P PK DPLL +G ID +T+ TND+
Sbjct: 11 PGMNPPGPKAD-----------DPLLQNGSSIDPNKHSTADETLNRTNDK---------- 49
Query: 75 HKSENLATTNGTESALTPETASTRRLTATE---AWLPPGWEIEDRVRTSGATAGTVDKYY 131
G + +TP RRL+ T +WLPPGW +EDRVRTSGATAGT DKYY
Sbjct: 50 ----------GNQQPVTP-VREKRRLSETAVDTSWLPPGWVVEDRVRTSGATAGTRDKYY 98
Query: 132 FHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAGSTKQKKPNIKAKTSAL 191
SGRRFRSKK+V Y+LETGT +KR K N D D++ SA S K + A
Sbjct: 99 IEPVSGRRFRSKKDVQYYLETGTLKKRGKVAENVDADTN-SAENSKSSKNKSGANTNFAW 157
Query: 192 NFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKI 247
NFD FN P+ EW LT+ +E +WTPFI +VP ++ W F LTTS++G ++
Sbjct: 158 NFDSFNVPDRTEWFLTEANEDTWTPFIDGKKVPLYDKEQWDFTFASLTTSSHGYRM 213
>gi|15238389|ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsis thaliana]
gi|75180469|sp|Q9LTJ1.1|MBD6_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 6;
Short=AtMBD6; Short=MBD06; AltName:
Full=Methyl-CpG-binding protein MBD6
gi|8885544|dbj|BAA97474.1| unnamed protein product [Arabidopsis thaliana]
gi|28416643|gb|AAO42852.1| At5g59380 [Arabidopsis thaliana]
gi|110743343|dbj|BAE99559.1| hypothetical protein [Arabidopsis thaliana]
gi|332009795|gb|AED97178.1| methyl-CPG-binding domain 6 protein [Arabidopsis thaliana]
Length = 225
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 7/220 (3%)
Query: 33 NVPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTESA-LT 91
+ PPDPLL SG FI +A T S+ Q E S + NGT+
Sbjct: 8 DFPPDPLLASGAFISSAGDGTLDSSAKRRPIQGGIGISGSGE--SVRIGMANGTDQVNHQ 65
Query: 92 PETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
E+ S +R + WLPPGW +ED++RTSGATAG+VDKYY+ +GR+FRS+ EVLY+LE
Sbjct: 66 TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLE 125
Query: 152 TGTKRK--RRKENSNADMDS-SGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTD 208
GT ++ ++ EN+ + D G + + L+FD+ N P+ V W + +
Sbjct: 126 HGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMAN 185
Query: 209 PSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKIC 248
E W P IG V+V +SVR+DW+ AFT TS N SK+
Sbjct: 186 AGEEGWIPNIGDVKVQDSVRRDWSTAFT-FITSRNPSKVS 224
>gi|255584216|ref|XP_002532846.1| DNA binding protein, putative [Ricinus communis]
gi|223527383|gb|EEF29524.1| DNA binding protein, putative [Ricinus communis]
Length = 234
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 115/206 (55%), Gaps = 21/206 (10%)
Query: 37 DPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTESALTPETAS 96
DPLL +G FIDA TT + + + + G E + S
Sbjct: 30 DPLLRNGSFIDA---------TTIKPNIDNNVSNNNNNNNYQQQEANVGVEQSEATPLKS 80
Query: 97 TRRLTATEA---------WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL 147
R++ T A WLPPGW +EDRVR SGATAGTVDKYY +GRRFRSKKEV
Sbjct: 81 RRKVPVTMAPAPSADSANWLPPGWLVEDRVRASGATAGTVDKYYIEPVTGRRFRSKKEVQ 140
Query: 148 YFLETGTKR--KRRKENSNADMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWV 205
YFLETGTK+ KR ENS D++ + S GS K KK + AK NFDY N P+ +EW
Sbjct: 141 YFLETGTKKKTKRGMENSEGDVNFTES-PGSQKSKKASKNAKVQKRNFDYLNVPDRIEWA 199
Query: 206 LTDPSEGSWTPFIGKVEVPESVRQDW 231
L D ++ +WTPF+G +V E RQ+W
Sbjct: 200 LIDANQDAWTPFLGGQKVAEYDRQNW 225
>gi|297815816|ref|XP_002875791.1| hypothetical protein ARALYDRAFT_485028 [Arabidopsis lyrata subsp.
lyrata]
gi|297321629|gb|EFH52050.1| hypothetical protein ARALYDRAFT_485028 [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 103/179 (57%), Gaps = 14/179 (7%)
Query: 83 TNGTESALTP--------ETASTRRLT-ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFH 133
+NGT+ A P + S +R T + WLPP W E RVRTSG AGTVDK+Y+
Sbjct: 2 SNGTDQAQPPPENTATPVDLKSRKRATPGDDNWLPPDWRTEVRVRTSGTKAGTVDKFYYE 61
Query: 134 VASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAA-GST-KQKKPNIKAKT--- 188
+GR+FRSK EVLY+LE G +K K+ N D S S GS +Q K N KA
Sbjct: 62 PITGRKFRSKNEVLYYLEHGAPKKAVKKAENGDSLSEHSEGRGSIRRQTKSNKKANEPPP 121
Query: 189 SALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKI 247
LNFD+ N PE V W + SE +W PFIG ++ ESV QDW AFT +TT N G+ +
Sbjct: 122 KPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWGRAFTLVTTQNAGTTM 180
>gi|15232591|ref|NP_190242.1| methyl-CPG-binding domain protein 5 [Arabidopsis thaliana]
gi|75206905|sp|Q9SNC0.1|MBD5_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 5;
Short=AtMBD5; Short=MBD05; AltName:
Full=Methyl-CpG-binding protein MBD5
gi|6523061|emb|CAB62328.1| putative protein [Arabidopsis thaliana]
gi|17380750|gb|AAL36205.1| unknown protein [Arabidopsis thaliana]
gi|23296870|gb|AAN13191.1| unknown protein [Arabidopsis thaliana]
gi|332644653|gb|AEE78174.1| methyl-CPG-binding domain protein 5 [Arabidopsis thaliana]
Length = 182
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 83 TNGTESALTP--------ETASTRRLT-ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFH 133
+NGT+ A P ++ S +R T + WLPP W E RVRTSG AGTVDK+Y+
Sbjct: 2 SNGTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYE 61
Query: 134 VASGRRFRSKKEVLYFLETGT-KRKRRKENSNADMDSS-----GSAAGSTKQKKPNIKAK 187
+GR+FRSK EVLY+LE GT K+K K N D S GSA TK K +
Sbjct: 62 PITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPP 121
Query: 188 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKI 247
LNFD+ N PE V W + SE +W PFIG ++ ESV QDW FT +T+ N G +
Sbjct: 122 PKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGKTM 181
>gi|21554707|gb|AAM63666.1| unknown [Arabidopsis thaliana]
Length = 182
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 83 TNGTESALTP--------ETASTRRLT-ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFH 133
+NGT+ A P ++ S +R T + WLPP W E RVRTSG AGTVDK+Y+
Sbjct: 2 SNGTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYE 61
Query: 134 VASGRRFRSKKEVLYFLETGT-KRKRRKENSNADMDSS-----GSAAGSTKQKKPNIKAK 187
+GR+FRSK EVLY+LE GT K+K K N D S GSA TK K +
Sbjct: 62 PITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPP 121
Query: 188 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKI 247
LNFD+ N PE V W + SE +W PFIG ++ ESV QDW FT +T+ N G +
Sbjct: 122 PKPLNFDFLNVPEKVTWTGINGSEETWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGKTM 181
>gi|359478635|ref|XP_003632148.1| PREDICTED: methyl-CpG-binding domain-containing protein 6-like
[Vitis vinifera]
Length = 297
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 16/135 (11%)
Query: 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENS 163
E WLPPGW +E RVR+SGA+AG+ DKY+ +GRRFRSKKEV Y+LETG RK+ K+N
Sbjct: 169 EDWLPPGWIVEGRVRSSGASAGSRDKYFIEPITGRRFRSKKEVRYYLETGEVRKKPKKNP 228
Query: 164 NADMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEV 223
+ P K+ LNF++ + P+ V+WV T SEG WTPFI EV
Sbjct: 229 D---------------NSPEKGTKSPPLNFNFEDVPDTVKWVRTGSSEG-WTPFINGQEV 272
Query: 224 PESVRQDWAAAFTDL 238
PES ++DWAAAF L
Sbjct: 273 PESSKRDWAAAFEFL 287
>gi|297746071|emb|CBI16127.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 16/135 (11%)
Query: 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENS 163
E WLPPGW +E RVR+SGA+AG+ DKY+ +GRRFRSKKEV Y+LETG RK+ K+N
Sbjct: 7 EDWLPPGWIVEGRVRSSGASAGSRDKYFIEPITGRRFRSKKEVRYYLETGEVRKKPKKNP 66
Query: 164 NADMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEV 223
+ P K+ LNF++ + P+ V+WV T SEG WTPFI EV
Sbjct: 67 D---------------NSPEKGTKSPPLNFNFEDVPDTVKWVRTGSSEG-WTPFINGQEV 110
Query: 224 PESVRQDWAAAFTDL 238
PES ++DWAAAF L
Sbjct: 111 PESSKRDWAAAFEFL 125
>gi|449523954|ref|XP_004168988.1| PREDICTED: methyl-CpG-binding domain-containing protein 6-like
[Cucumis sativus]
Length = 206
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 90/148 (60%), Gaps = 22/148 (14%)
Query: 33 NVPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTESALTP 92
++PPDPLL +G FID++ ++ T+T T R R + L T++ S L P
Sbjct: 52 HLPPDPLLSAGSFIDSST-SSPTPATSTVPSPTLPSRDLDRTPRKTPL-TSSTRRSPLRP 109
Query: 93 E--------TASTRRLTATEA------------WLPPGWEIEDRVRTSGATAGTVDKYYF 132
+ ++ +++++A+ + WLPPGW +EDRVR+SGATAGTVDKYYF
Sbjct: 110 DPLNSFNGDSSPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYF 169
Query: 133 HVASGRRFRSKKEVLYFLETGTKRKRRK 160
S RRFRSK EVLYFLETGT RKR+K
Sbjct: 170 DPVSNRRFRSKIEVLYFLETGTLRKRKK 197
>gi|147853279|emb|CAN80675.1| hypothetical protein VITISV_003810 [Vitis vinifera]
Length = 319
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 64/109 (58%), Gaps = 16/109 (14%)
Query: 130 YYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADMDSSGSAAGSTKQKKPNIKAKTS 189
Y+ +GRRFRSKKEV Y+LETG RK+ K+N + P K+
Sbjct: 10 YFIEPITGRRFRSKKEVRYYLETGEVRKKPKKNPD---------------NSPEKGTKSP 54
Query: 190 ALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDL 238
LNF++ + P+ V+WV T SEG WTPFI EVPES ++DWAAAF L
Sbjct: 55 PLNFNFEDVPDTVKWVRTGSSEG-WTPFINGQEVPESSKRDWAAAFEFL 102
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 34 VPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKR-----GTIREHKSENLATTNGTES 88
VP DP+L++ + S ++ D+ S K+ T RE++ + A +
Sbjct: 134 VPNDPILEA--MQNQRKRLKSFEGKSSQVDEASVKQRFHAHQTPRENRDKVPAVASXQLL 191
Query: 89 ALTPETAST---RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKE 145
PET + R +WLPP W +E R G AG +D ++ G RFRSKK+
Sbjct: 192 VXQPETKAGHKGRLHDERPSWLPPDWHVEKETRLQGKKAGYLDSFFVD-PMGNRFRSKKK 250
Query: 146 VLYFLETGT-KRKRRKENSNADMDSSGSAAGSTK 178
VL FL+T R+ +N N M + G G K
Sbjct: 251 VLSFLQTEVLPRRTANKNPNPAMANGGGEGGRWK 284
>gi|224104485|ref|XP_002313451.1| methyl binding domain protein [Populus trichocarpa]
gi|222849859|gb|EEE87406.1| methyl binding domain protein [Populus trichocarpa]
Length = 236
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNAD 166
LP GW +E + R + AG +DK+YF +G+RFRS + V +L G + E A
Sbjct: 101 LPNGWIVEKKPRKNMECAGIIDKHYFEPETGKRFRSLRSVEKYLTEGKEHIATLEALKAG 160
Query: 167 MDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPES 226
D+ + S+ QK+ + K D + P ++WVL+ P W PF+ VPE
Sbjct: 161 -DNFIPSKSSSSQKEHVSRKKVETSMLDPSSIPAKIKWVLSGPGGIVWNPFMDDSLVPEF 219
Query: 227 VRQDWAAAFT 236
++Q W+ F
Sbjct: 220 IKQKWSETFV 229
>gi|359478997|ref|XP_002281414.2| PREDICTED: methyl-CpG-binding domain-containing protein 7-like
[Vitis vinifera]
gi|297746130|emb|CBI16186.3| unnamed protein product [Vitis vinifera]
Length = 212
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 18/131 (13%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETGTKRKRRKENSNA 165
LP W + R +++G + KYY+ +GR+FRS K V + +E + +NS+A
Sbjct: 92 LPDNWVFQKR----SSSSGQIHKYYYEPGTGRQFRSLKSVQRHLIEANDCTHKPSQNSDA 147
Query: 166 DMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPE 225
+K+ + K KTS +F P+ V WVLT P W+P+I VPE
Sbjct: 148 -----------SKKNNSSTKVKTSTSHF--IKPPKKVNWVLTGPGGDVWSPYINASAVPE 194
Query: 226 SVRQDWAAAFT 236
S++Q WA F
Sbjct: 195 SIKQTWAKIFM 205
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP W + R SG + G +DKYY+ +GR+FRS K + +L
Sbjct: 12 LPRDWVVRKVRRASGKSCGLIDKYYYEPETGRQFRSLKSIQKYL 55
>gi|147767135|emb|CAN67324.1| hypothetical protein VITISV_012829 [Vitis vinifera]
Length = 212
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETGTKRKRRKENSNA 165
LP W + R +++G + KYY+ GR+FRS K V + +E + +NS+A
Sbjct: 92 LPDNWVFQKR----SSSSGQIHKYYYEPGXGRQFRSLKSVQRHLIEANDCTHKPSQNSDA 147
Query: 166 DMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPE 225
+K+ + K KTS +F P+ V WVLT P W+P+I VPE
Sbjct: 148 -----------SKKNNSSTKVKTSTSHF--IKPPKKVNWVLTGPGGDVWSPYINASAVPE 194
Query: 226 SVRQDWAAAFT 236
S++Q WA F
Sbjct: 195 SIKQTWAKIFM 205
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP W + R SG + G +DKYY+ +GR+FRS K + +L
Sbjct: 12 LPRDWVVRKVRRASGKSCGLIDKYYYEPETGRQFRSLKSIQKYL 55
>gi|302756025|ref|XP_002961436.1| hypothetical protein SELMODRAFT_437797 [Selaginella moellendorffii]
gi|300170095|gb|EFJ36696.1| hypothetical protein SELMODRAFT_437797 [Selaginella moellendorffii]
Length = 769
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 100 LTATEA----WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+T TEA WLP GW E R R G DKYY SGRRFRSK EV +LETG
Sbjct: 91 VTITEAPAPSWLPEGWISECRTRADGHR----DKYYIESYSGRRFRSKVEVFKYLETG 144
>gi|302817179|ref|XP_002990266.1| hypothetical protein SELMODRAFT_428715 [Selaginella moellendorffii]
gi|300141975|gb|EFJ08681.1| hypothetical protein SELMODRAFT_428715 [Selaginella moellendorffii]
Length = 776
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 100 LTATEA----WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+T TEA WLP GW E R R G DKYY SGRRFRSK EV +LETG
Sbjct: 94 VTITEAPAPSWLPEGWISECRTRADGHR----DKYYIESYSGRRFRSKVEVFKYLETG 147
>gi|356561673|ref|XP_003549104.1| PREDICTED: uncharacterized protein LOC100778412 [Glycine max]
Length = 546
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKR 156
++ WLPPGW +E RVR +G DKYYF +SG +F SK EV +L+ +
Sbjct: 6 SDCWLPPGWTVEVRVRKNGKR----DKYYFPPSSGLKFNSKVEVFRYLDNAQNK 55
>gi|413918020|gb|AFW57952.1| methyl-binding domain MBD113 protein isoform 1 [Zea mays]
gi|413918021|gb|AFW57953.1| methyl-binding domain MBD113 protein isoform 2 [Zea mays]
Length = 491
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+A L + WLP GW IE VR G + K+Y H+ +G+RF SK EVL+F+ G
Sbjct: 142 SAEDNELHESHTWLPRGWVIE--VRAGGKKMDKMYKFYVHLPTGQRFLSKAEVLHFVNKG 199
Query: 154 TKRKRRKENSNADMD 168
S DMD
Sbjct: 200 MV-------STCDMD 207
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164
WLP GW +E G++ KYY SG F SK E L++L +G + + + ++
Sbjct: 87 GWLPDGWTME----VCQEDNGSIYKYYTSPMSGYMFTSKMETLHYLFSGVEERMLELQAS 142
Query: 165 AD 166
A+
Sbjct: 143 AE 144
>gi|413918022|gb|AFW57954.1| methyl-binding domain MBD113 protein [Zea mays]
Length = 485
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+A L + WLP GW IE VR G + K+Y H+ +G+RF SK EVL+F+ G
Sbjct: 136 SAEDNELHESHTWLPRGWVIE--VRAGGKKMDKMYKFYVHLPTGQRFLSKAEVLHFVNKG 193
Query: 154 TKRKRRKENSNADMD 168
S DMD
Sbjct: 194 MV-------STCDMD 201
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164
WLP GW +E G++ KYY SG F SK E L++L +G + + + ++
Sbjct: 81 GWLPDGWTME----VCQEDNGSIYKYYTSPMSGYMFTSKMETLHYLFSGVEERMLELQAS 136
Query: 165 AD 166
A+
Sbjct: 137 AE 138
>gi|259490279|ref|NP_001159179.1| uncharacterized protein LOC100304264 [Zea mays]
gi|223942501|gb|ACN25334.1| unknown [Zea mays]
Length = 397
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+A L + WLP GW IE VR G + K+Y H+ +G+RF SK EVL+F+ G
Sbjct: 48 SAEDNELHESHTWLPRGWVIE--VRAGGKKMDKMYKFYVHLPTGQRFLSKAEVLHFVNKG 105
Query: 154 TKRKRRKENSNADMD 168
S DMD
Sbjct: 106 MV-------STCDMD 113
>gi|225434937|ref|XP_002283682.1| PREDICTED: uncharacterized protein LOC100243225 [Vitis vinifera]
Length = 207
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 34 VPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKR-----GTIREHKSENLATTNGTES 88
VP DP+L++ + S ++ D+ S K+ T RE++ + A +
Sbjct: 22 VPNDPILEA--MQNQRKRLKSFEGKSSQVDEASVKQRFHAHQTPRENRDKVPAVASDQLL 79
Query: 89 ALTPETASTRRLTATE---AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKE 145
PET + + + +WLPP W +E R G AG +D ++ G RFRSKK+
Sbjct: 80 VAQPETKAGHKGRLHDERPSWLPPDWHVEKETRLQGKKAGYLDSFFVD-PMGNRFRSKKK 138
Query: 146 VLYFLETGT-KRKRRKENSNADMDSSGSAAGSTK 178
VL FL+T R+ +N N M + G K
Sbjct: 139 VLSFLQTEVLPRRTANKNPNPAMANGAGEGGRWK 172
>gi|449016928|dbj|BAM80330.1| unknown homeobox protein [Cyanidioschyzon merolae strain 10D]
Length = 818
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LPPGW +E+++R G+ AG +D+ Y GR+FRS KEV FL+
Sbjct: 774 LPPGWRLEEQIRKGGSLAGRIDRVYVS-PDGRKFRSLKEVARFLD 817
>gi|412988901|emb|CCO15492.1| predicted protein [Bathycoccus prasinos]
Length = 872
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRK 160
L PGW + R SGAT G DKYYF GR+ RSK EV+ FL + T ++ K
Sbjct: 23 LAPGWRVAIETRKSGATKGGTDKYYFS-PDGRKLRSKTEVMRFLSSTTSDEKSK 75
>gi|358418734|ref|XP_003584033.1| PREDICTED: methyl-CpG-binding domain protein 2 [Bos taurus]
Length = 149
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+IE+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 6 LPPGWKIEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 48
>gi|297746070|emb|CBI16126.3| unnamed protein product [Vitis vinifera]
Length = 177
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGT-KRKRRKENS 163
+WLPP W +E R G AG +D ++ G RFRSKK+VL FL+T R+ +N
Sbjct: 69 SWLPPDWHVEKETRLQGKKAGYLDSFFVD-PMGNRFRSKKKVLSFLQTEVLPRRTANKNP 127
Query: 164 NADMDSSGSAAGSTK 178
N M + G K
Sbjct: 128 NPAMANGAGEGGRWK 142
>gi|383851119|ref|XP_003701087.1| PREDICTED: uncharacterized protein LOC100875782 [Megachile
rotundata]
Length = 1380
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 527 QGTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 586
Query: 143 KKEVLYFLE 151
+ ++ FLE
Sbjct: 587 RNDIKVFLE 595
>gi|328786530|ref|XP_001121736.2| PREDICTED: hypothetical protein LOC725950 [Apis mellifera]
Length = 1377
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 85 GTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSK 143
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRSK
Sbjct: 523 GTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSK 582
Query: 144 KEVLYFLE 151
++ F+E
Sbjct: 583 NDIRAFME 590
>gi|356527614|ref|XP_003532403.1| PREDICTED: uncharacterized protein LOC100807457 [Glycine max]
Length = 1122
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET 152
WLP GW +E R R SG G+ K Y G +F SK EVL +LET
Sbjct: 38 WLPDGWNVEVRTRKSGVHMGSGYKCYIEPLKGYKFFSKPEVLRYLET 84
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKR 156
LPPGW E ++R + + D +Y ASG FRSKK+VL +LE+G R
Sbjct: 248 LPPGWVKELKIRKN-SKGIRKDPFYIDPASGYVFRSKKDVLRYLESGDIR 296
>gi|340730117|ref|XP_003403333.1| PREDICTED: hypothetical protein LOC100651907 isoform 3 [Bombus
terrestris]
Length = 1378
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 521 QGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 580
Query: 143 KKEVLYFLE 151
K ++ F+E
Sbjct: 581 KNDIRAFME 589
>gi|350425399|ref|XP_003494110.1| PREDICTED: hypothetical protein LOC100749657 isoform 1 [Bombus
impatiens]
Length = 1372
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 523 QGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 582
Query: 143 KKEVLYFLE 151
K ++ F+E
Sbjct: 583 KNDIRAFME 591
>gi|340730113|ref|XP_003403331.1| PREDICTED: hypothetical protein LOC100651907 isoform 1 [Bombus
terrestris]
Length = 1359
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 512 QGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 571
Query: 143 KKEVLYFLE 151
K ++ F+E
Sbjct: 572 KNDIRAFME 580
>gi|340730115|ref|XP_003403332.1| PREDICTED: hypothetical protein LOC100651907 isoform 2 [Bombus
terrestris]
Length = 1368
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 521 QGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 580
Query: 143 KKEVLYFLE 151
K ++ F+E
Sbjct: 581 KNDIRAFME 589
>gi|350425402|ref|XP_003494111.1| PREDICTED: hypothetical protein LOC100749657 isoform 2 [Bombus
impatiens]
Length = 1363
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGW+ R +G +AG D + H +SG++FRS
Sbjct: 514 QGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRS 573
Query: 143 KKEVLYFLE 151
K ++ F+E
Sbjct: 574 KNDIRAFME 582
>gi|169234846|ref|NP_001108497.1| methyl-CpG-binding domain protein 2 [Rattus norvegicus]
gi|165970773|gb|AAI58878.1| Mbd2 protein [Rattus norvegicus]
Length = 412
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 156 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 198
>gi|426386009|ref|XP_004059488.1| PREDICTED: methyl-CpG-binding domain protein 2 [Gorilla gorilla
gorilla]
Length = 411
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 197
>gi|4505117|ref|NP_003918.1| methyl-CpG-binding domain protein 2 isoform 1 [Homo sapiens]
gi|50401198|sp|Q9UBB5.1|MBD2_HUMAN RecName: Full=Methyl-CpG-binding domain protein 2; AltName:
Full=Demethylase; Short=DMTase; AltName:
Full=Methyl-CpG-binding protein MBD2
gi|3800793|gb|AAC68871.1| methyl-CpG binding protein MBD2 [Homo sapiens]
gi|5929756|gb|AAD56597.1| methyl-CpG binding protein 2 [Homo sapiens]
gi|21595776|gb|AAH32638.1| Methyl-CpG binding domain protein 2 [Homo sapiens]
gi|119583401|gb|EAW62997.1| methyl-CpG binding domain protein 2, isoform CRA_a [Homo sapiens]
Length = 411
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 197
>gi|281351227|gb|EFB26811.1| hypothetical protein PANDA_002637 [Ailuropoda melanoleuca]
Length = 287
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 30 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 72
>gi|126320765|ref|XP_001362190.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Monodelphis
domestica]
Length = 416
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 160 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 202
>gi|3800795|gb|AAC68872.1| methyl-CpG binding protein MBD2 [Mus musculus]
gi|5739188|gb|AAD50372.1| methyl-CpG binding protein 2 [Mus musculus]
gi|37572285|gb|AAH46607.2| Methyl-CpG binding domain protein 2 [Mus musculus]
gi|148677619|gb|EDL09566.1| methyl-CpG binding domain protein 2, isoform CRA_b [Mus musculus]
Length = 414
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 158 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 200
>gi|218931229|ref|NP_034903.2| methyl-CpG-binding domain protein 2 [Mus musculus]
gi|341940941|sp|Q9Z2E1.2|MBD2_MOUSE RecName: Full=Methyl-CpG-binding domain protein 2; AltName:
Full=Methyl-CpG-binding protein MBD2
Length = 414
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 158 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 200
>gi|431896183|gb|ELK05599.1| Methyl-CpG-binding domain protein 2 [Pteropus alecto]
Length = 262
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 6 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 48
>gi|301757743|ref|XP_002914722.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Ailuropoda
melanoleuca]
Length = 330
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 73 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 115
>gi|402903150|ref|XP_003914441.1| PREDICTED: methyl-CpG-binding domain protein 2 [Papio anubis]
Length = 412
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 156 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 198
>gi|109122247|ref|XP_001082249.1| PREDICTED: methyl-CpG-binding domain protein 2 [Macaca mulatta]
Length = 412
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 156 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 198
>gi|380798437|gb|AFE71094.1| methyl-CpG-binding domain protein 2 isoform 1, partial [Macaca
mulatta]
Length = 276
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 20 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 62
>gi|403268200|ref|XP_003926168.1| PREDICTED: methyl-CpG-binding domain protein 2, partial [Saimiri
boliviensis boliviensis]
Length = 283
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 27 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 69
>gi|307203572|gb|EFN82605.1| PHD finger protein 20 [Harpegnathos saltator]
Length = 1346
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + ++ LPPGWE R +G +AG D + H +G++FRS
Sbjct: 501 QGTESYIVDGNDGPRRSIIISDKRLPPGWEKHFTQRKAGTSAGKWDVLFIHKQTGKKFRS 560
Query: 143 KKEVLYFLE 151
+ ++ F+E
Sbjct: 561 RNDIRVFME 569
>gi|332017137|gb|EGI57936.1| PHD finger protein 20-like protein 1 [Acromyrmex echinatior]
Length = 1350
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LPPGWE R +G++AG D + H +G++FRS
Sbjct: 493 QGTESYIVDGNDGPRRSIIVPDKRLPPGWEKHFTQRKAGSSAGKWDVLFIHKQTGKKFRS 552
Query: 143 KKEVLYFLE 151
+ ++ F+E
Sbjct: 553 RNDIRIFME 561
>gi|149064588|gb|EDM14791.1| rCG46680, isoform CRA_b [Rattus norvegicus]
Length = 447
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 191 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 233
>gi|291394391|ref|XP_002713528.1| PREDICTED: methyl-CpG binding domain protein 2 [Oryctolagus
cuniculus]
Length = 310
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 54 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 96
>gi|449452356|ref|XP_004143925.1| PREDICTED: uncharacterized protein LOC101223188 [Cucumis sativus]
gi|449495846|ref|XP_004159962.1| PREDICTED: uncharacterized protein LOC101226976 [Cucumis sativus]
Length = 853
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET-----GTKRKRRK 160
WLP GW++E R R SG+ G V K Y + RF SK EV L T T ++RR
Sbjct: 85 WLPAGWKVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHLRTVKNKLCTLKERRT 144
Query: 161 EN 162
N
Sbjct: 145 SN 146
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 37 DPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTESALTPETAS 96
DP+ DS F+ + P T N K T++E + T+NG +S
Sbjct: 112 DPVTDSRFY---SKPEVFRHLRTVKN-----KLCTLKERR-----TSNGKKS-------- 150
Query: 97 TRRLTATEAW----LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET 152
R E + LPPGW E +++ A D +Y SG FRSKKEV +LET
Sbjct: 151 -RSRVVIEHYKDEDLPPGWIKEIKIKEK-ADGIRKDPFYIDPKSGYVFRSKKEVFRYLET 208
Query: 153 G 153
G
Sbjct: 209 G 209
>gi|344269858|ref|XP_003406764.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Loxodonta
africana]
Length = 348
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 92 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 134
>gi|194214687|ref|XP_001499825.2| PREDICTED: methyl-CpG-binding domain protein 2-like [Equus
caballus]
Length = 337
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 81 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 123
>gi|3800799|gb|AAC68874.1| testis specific methyl-CpG binding protein MBD2 [Mus musculus]
gi|5739189|gb|AAD50373.1| testis-specific methyl-CpG binding protein 2 [Mus musculus]
gi|148677618|gb|EDL09565.1| methyl-CpG binding domain protein 2, isoform CRA_a [Mus musculus]
Length = 249
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
T S +R+ LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 147 TESGKRMDCPA--LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 200
>gi|357167314|ref|XP_003581103.1| PREDICTED: uncharacterized protein LOC100844950 [Brachypodium
distachyon]
Length = 466
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A +L WLP GW IE VR G + K+Y H+ +G RF SK++VL ++ G
Sbjct: 108 CAVDNKLLGMYRWLPDGWVIE--VRAGGKVMDKMYKFYVHLPTGTRFFSKEDVLRYVNEG 165
Query: 154 TKRKR 158
+R
Sbjct: 166 EISRR 170
>gi|395830852|ref|XP_003788528.1| PREDICTED: methyl-CpG-binding domain protein 2 [Otolemur garnettii]
Length = 405
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 149 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 191
>gi|397514153|ref|XP_003827361.1| PREDICTED: methyl-CpG-binding domain protein 2 [Pan paniscus]
Length = 376
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 120 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 162
>gi|410052700|ref|XP_512139.4| PREDICTED: methyl-CpG-binding domain protein 2 isoform 3 [Pan
troglodytes]
Length = 487
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 231 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 273
>gi|149064587|gb|EDM14790.1| rCG46680, isoform CRA_a [Rattus norvegicus]
Length = 278
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
T S +R+ LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 180 TESGKRMDCPA--LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 233
>gi|60097955|ref|NP_001012403.1| methyl-CpG-binding domain protein 2 [Gallus gallus]
gi|58450101|gb|AAW78400.1| methyl-CpG-binding domain protein 2 [Gallus gallus]
Length = 257
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 12 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 54
>gi|7710145|ref|NP_056647.1| methyl-CpG-binding domain protein 2 testis-specific isoform [Homo
sapiens]
gi|5929755|gb|AAD56596.1| testis-specific methyl-CpG binding protein 2 [Homo sapiens]
gi|119583402|gb|EAW62998.1| methyl-CpG binding domain protein 2, isoform CRA_b [Homo sapiens]
gi|119583403|gb|EAW62999.1| methyl-CpG binding domain protein 2, isoform CRA_b [Homo sapiens]
Length = 302
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
T S +R+ LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 144 TESGKRMDCPA--LPPGWKKEEVIRKSGLSAGKSDVYYF-SPSGKKFRSKPQLARYL 197
>gi|192759053|gb|ACF05484.1| methyl-CpG-binding domain type 2/3b [Patiria pectinifera]
Length = 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+LP GW+ E+ +R SG +AG D YY H GR+FRSK ++ FL
Sbjct: 11 FLPKGWKKEEVIRKSGLSAGKTDIYY-HSPCGRKFRSKPQLARFL 54
>gi|192759051|gb|ACF05483.1| methyl-CpG-binding domain type 2/3a [Patiria pectinifera]
Length = 268
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+LP GW+ E+ +R SG +AG D YY H GR+FRSK ++ FL
Sbjct: 11 FLPKGWKKEEVIRKSGLSAGKTDIYY-HSPCGRKFRSKPQLARFL 54
>gi|47210325|emb|CAF91173.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPPGWKKEEVIRKSGLSAGKSDVYYYS-PSGKKFRSKPQLSRYL 53
>gi|356511506|ref|XP_003524466.1| PREDICTED: uncharacterized protein LOC100782433 [Glycine max]
Length = 1226
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET 152
WLP GW +E R R SG G+ K Y +F SK EVL +LET
Sbjct: 54 WLPDGWNVEVRTRKSGVHMGSGYKCYIEPLKRYKFFSKPEVLRYLET 100
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKR 156
LPPGW E ++R + D +Y ASG FRSKK+VL +LE+G R
Sbjct: 247 LPPGWVKELKIR-KNSKGIRKDPFYIDPASGYVFRSKKDVLRYLESGDIR 295
>gi|348505486|ref|XP_003440292.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Oreochromis
niloticus]
Length = 265
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPPGWKKEEVIRKSGLSAGKSDVYYYS-PSGKKFRSKPQLSRYL 53
>gi|410903269|ref|XP_003965116.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Takifugu
rubripes]
Length = 265
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPPGWKKEEVIRKSGLSAGKSDVYYYS-PSGKKFRSKPQLSRYL 53
>gi|124359618|gb|ABD32284.2| Methyl-CpG binding [Medicago truncatula]
gi|388502764|gb|AFK39448.1| unknown [Medicago truncatula]
Length = 286
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 65/176 (36%), Gaps = 49/176 (27%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL---------------E 151
LP GW +E R R S + VD+YY +G++FRS V +L E
Sbjct: 101 LPDGWLVEHRPRLS--NSDRVDRYYIEPRTGQKFRSLTSVQRYLMAEARDYLPTERMISE 158
Query: 152 TGTKRKRR------------------KENSNADMDSSGSAAGSTKQKKPNIKAKTSALN- 192
T K R EN+ GS K+ P+I K +
Sbjct: 159 NATCIKSRTAQKLRPAKDFEGRLSFSAENACRATPKLVFKCGSGKKSAPSISYKENDSQK 218
Query: 193 ------------FDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFT 236
+ P V WVL+DP G W PF+ VP S ++ W+ AF+
Sbjct: 219 KIKIGEDDRGSIHNLARPPTKVSWVLSDP-RGFWNPFLDDSVVPASEKRKWSEAFS 273
>gi|432950889|ref|XP_004084660.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Oryzias
latipes]
Length = 261
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YY+ +G++FRSK ++ +L
Sbjct: 12 LPPGWKKEEVIRKSGLSAGKSDVYYYS-PTGKKFRSKPQLARYL 54
>gi|432853519|ref|XP_004067747.1| PREDICTED: methyl-CpG-binding domain protein 3-like isoform 1
[Oryzias latipes]
Length = 274
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW++E+ R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 11 LPKGWKMEEVTRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 53
>gi|215686747|dbj|BAG89597.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740679|dbj|BAG97335.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 568
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A L WLP GW IE VR G + K+Y H+ +G RF SK+ VL + G
Sbjct: 156 CADDNELHRMHTWLPDGWAIE--VRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEG 213
>gi|38344598|emb|CAD39968.2| OSJNBa0072D08.3 [Oryza sativa Japonica Group]
Length = 505
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A L WLP GW IE VR G + K+Y H+ +G RF SK+ VL + G
Sbjct: 93 CADDNELHRMHTWLPDGWAIE--VRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEG 150
>gi|357454113|ref|XP_003597337.1| hypothetical protein MTR_2g096520 [Medicago truncatula]
gi|355486385|gb|AES67588.1| hypothetical protein MTR_2g096520 [Medicago truncatula]
Length = 304
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 49/176 (27%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRK---RRKENS 163
LP GW +E R R S + VD+YY +G++FRS V +L + R +
Sbjct: 97 LPDGWLVEHRPRLSNS--DRVDRYYIEPRTGQKFRSLTSVQRYLMAEARDYLPTERMISE 154
Query: 164 NADMDSSGSA------------------------------AGSTKQKKPNIKAKTSALN- 192
NA S +A GS K+ P+I K +
Sbjct: 155 NATCIKSRTAQKLRPAKDFEGRLSFSAENACRATPKLVFKCGSGKKSAPSISYKENDSQK 214
Query: 193 ------------FDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFT 236
+ P V WVL+DP G W PF+ VP S ++ W+ AF+
Sbjct: 215 KIKIGEDDRGSIHNLARPPTKVSWVLSDP-RGFWNPFLDDSVVPASEKRKWSEAFS 269
>gi|116309153|emb|CAH66253.1| OSIGBa0139I12.2 [Oryza sativa Indica Group]
Length = 505
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A L WLP GW IE VR G + K+Y H+ +G RF SK+ VL + G
Sbjct: 93 CADDNELHRMHTWLPDGWAIE--VRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEG 150
>gi|47086513|ref|NP_997933.1| methyl-CpG-binding domain protein 2 [Danio rerio]
gi|29692019|gb|AAO91661.1| methyl-CpG binding protein 2 [Danio rerio]
gi|62204526|gb|AAH93117.1| Mbd2 protein [Danio rerio]
gi|157422758|gb|AAI53556.1| Methyl-CpG binding domain protein 2 [Danio rerio]
gi|182888962|gb|AAI64452.1| Mbd2 protein [Danio rerio]
Length = 256
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YY+ G++FRSK ++ +L
Sbjct: 11 LPPGWKKEEVIRKSGLSAGKSDVYYYS-PKGKKFRSKPQLSRYL 53
>gi|307191284|gb|EFN74931.1| Tudor domain-containing protein PHF20L1 [Camponotus floridanus]
Length = 1260
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 84 NGTESALTPETASTRR-LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRS 142
GTES + RR + + LP GWE R +G +AG D + H +G++FRS
Sbjct: 501 QGTESYIVDGNDGPRRSIIVPDRRLPSGWEKHFTQRKAGTSAGKWDVLFIHKQTGKKFRS 560
Query: 143 KKEVLYFLETGTKRKRRKENSNADMD--SSGSAAGSTKQKKPNIKAKTSALNFDYFNSPE 200
+ ++ F+E + EN + + A+ S ++ P K KT ++PE
Sbjct: 561 RNDIRVFMENQGQYDFNPENFDFCIHRRKRNHASRSKQEVTPEKKIKTLLPKTKTLSTPE 620
Query: 201 NVEWV 205
N V
Sbjct: 621 NTLQV 625
>gi|296222685|ref|XP_002757298.1| PREDICTED: methyl-CpG-binding domain protein 2, partial [Callithrix
jacchus]
Length = 299
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R G + G D YYF SG++FRSK ++ +L
Sbjct: 43 LPPGWKKEEVIRKFGLSVGKSDVYYFS-PSGKKFRSKPQLARYL 85
>gi|47215634|emb|CAG01351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 261
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW++E+ R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 11 LPKGWKMEEVTRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 53
>gi|47086507|ref|NP_997934.1| methyl-CpG-binding domain protein 3 [Danio rerio]
gi|37681869|gb|AAQ97812.1| methyl-CpG binding domain protein 3 [Danio rerio]
Length = 273
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW++E+ R SG +AG D YYF +G++FRSK +++ +L
Sbjct: 11 LPNGWKMEEVTRKSGLSAGKSDVYYFS-PTGKKFRSKPQLVRYL 53
>gi|218194472|gb|EEC76899.1| hypothetical protein OsI_15124 [Oryza sativa Indica Group]
gi|222617137|gb|EEE53269.1| hypothetical protein OsJ_36209 [Oryza sativa Japonica Group]
Length = 371
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A L WLP GW IE VR G + K+Y H+ +G RF SK+ VL + G
Sbjct: 156 CADDNELHRMHTWLPDGWAIE--VRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEG 213
>gi|47939475|gb|AAH71531.1| Methyl-CpG binding domain protein 3a [Danio rerio]
Length = 273
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW++E+ R SG +AG D YYF +G++FRSK +++ +L
Sbjct: 11 LPNGWKMEEVTRKSGLSAGKSDVYYFS-PTGKKFRSKPQLVRYL 53
>gi|333360981|pdb|2KY8|A Chain A, Solution Structure And Dynamic Analysis Of Chicken Mbd2
Methyl Binding Domain Bound To A Target Methylated Dna
Sequence
Length = 72
Score = 46.2 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 13 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 55
>gi|115457468|ref|NP_001052334.1| Os04g0266400 [Oryza sativa Japonica Group]
gi|113563905|dbj|BAF14248.1| Os04g0266400 [Oryza sativa Japonica Group]
Length = 313
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
A L WLP GW IE VR G + K+Y H+ +G RF SK+ VL + G
Sbjct: 156 CADDNELHRMHTWLPDGWAIE--VRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEG 213
>gi|222641235|gb|EEE69367.1| hypothetical protein OsJ_28704 [Oryza sativa Japonica Group]
Length = 229
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
P GW+IE+ +R T DKYY H +FRSK EV YFL+TG
Sbjct: 87 PTGWDIENHLRNDQKTK---DKYYRHKDYNHKFRSKPEVQYFLDTG 129
>gi|357610614|gb|EHJ67065.1| putative methyl-CpG binding transcription regulator [Danaus
plexippus]
Length = 251
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ VR +G +AG VD YY+ +G++ RSK E++ +L
Sbjct: 15 LPKGWQREEVVRKTGLSAGKVDVYYYS-PTGKKCRSKSELVRYL 57
>gi|50252935|dbj|BAD29189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 293
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
P GW+IE+ +R T DKYY H +FRSK EV YFL+TG
Sbjct: 162 PTGWDIENHLRNDQKTK---DKYYRHKDYNHKFRSKPEVQYFLDTG 204
>gi|291223461|ref|XP_002731728.1| PREDICTED: methyl-CpG-binding domain type 2/3a-like [Saccoglossus
kowalevskii]
Length = 252
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 98 RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
RR+ A LP GW+ E+ +R SG +AG D YYF +G++FRSK ++ FL
Sbjct: 4 RRVDDCSA-LPKGWKREEVIRKSGLSAGKSDVYYFS-PNGKKFRSKPQLARFL 54
>gi|297796933|ref|XP_002866351.1| methyl-CpG-binding domain 7 [Arabidopsis lyrata subsp. lyrata]
gi|297312186|gb|EFH42610.1| methyl-CpG-binding domain 7 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 98 RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRK 157
RR + + LP GW +E++ R + + +D+ Y +G +FRS V +L+
Sbjct: 175 RRGHSKDFSLPDGWIVEEKPRRNSSH---IDRSYIEPGTGNKFRSMAAVERYLQA----- 226
Query: 158 RRKENSNADMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTDPSEGSWTPF 217
ENS DM S A + + + ++ N P+ V+WVLT +T
Sbjct: 227 --VENSTVDMVHSERLA--LLMNRSGTRFQDEVIDP---NPPKKVKWVLTGSGGDMFTAN 279
Query: 218 IGKVEVPESVRQDWAAAFTDLT 239
+ +V V+Q W+ AF L
Sbjct: 280 VSGSDVSSLVKQTWSEAFVSLI 301
>gi|349605676|gb|AEQ00832.1| Methyl-CpG-binding domain protein 2-like protein, partial [Equus
caballus]
Length = 255
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 109 PGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
PGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 1 PGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 41
>gi|312599247|gb|ADQ91270.1| hypothetical protein BpV2_103 [Bathycoccus sp. RCC1105 virus BpV2]
Length = 250
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 111 WEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKR---------RKE 161
W ++ R SG +AG D YYF G+RFRS EV FL TG K +R KE
Sbjct: 22 WYVKIETRKSGKSAGMTDNYYFS-PEGKRFRSMIEVYRFLTTGDKFERDEKTRCLKINKE 80
Query: 162 NSNADMD 168
N++ MD
Sbjct: 81 NNDEIMD 87
>gi|440902692|gb|ELR53450.1| Methyl-CpG-binding domain protein 2, partial [Bos grunniens mutus]
Length = 255
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 109 PGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
PGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 1 PGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 41
>gi|255537375|ref|XP_002509754.1| hypothetical protein RCOM_1685990 [Ricinus communis]
gi|223549653|gb|EEF51141.1| hypothetical protein RCOM_1685990 [Ricinus communis]
Length = 978
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET 152
WLP GW +E +++ SG+ G K Y ++G +F SK EV LET
Sbjct: 13 WLPHGWIVELKIKNSGSARGRKYKCYVEPSTGYKFYSKPEVFRHLET 59
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 107 LPPGW--EIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164
LP GW EI+ + +T+G D YY SG FRSK++V +LETG +
Sbjct: 101 LPTGWIKEIKIQRKTNGIRK---DPYYIDPVSGYVFRSKRDVQRYLETGEISTCKILPRR 157
Query: 165 ADMDSSGSAAGSTKQKKPNIKAKTSAL 191
D+D S + + K +K + A + L
Sbjct: 158 RDIDDETSPSSAAKSQKLELLATSGQL 184
>gi|241616494|ref|XP_002407962.1| methyl-CpG binding transcription regulator, putative [Ixodes
scapularis]
gi|215502882|gb|EEC12376.1| methyl-CpG binding transcription regulator, putative [Ixodes
scapularis]
Length = 258
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ +R +G +AG VD YY+ G++FRSK ++ FL
Sbjct: 19 LPKGWKREEVIRRTGLSAGKVDVYYYS-PGGKKFRSKPQLARFL 61
>gi|224122408|ref|XP_002318826.1| methyl binding domain protein [Populus trichocarpa]
gi|222859499|gb|EEE97046.1| methyl binding domain protein [Populus trichocarpa]
Length = 762
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
++ WLP GW +E +VR +G DK+YF + G RF SK EV +L
Sbjct: 6 SDDWLPEGWRVEVKVRNNGKK----DKFYFPPSGGCRFNSKIEVSRYL 49
>gi|224134745|ref|XP_002321896.1| methyl binding domain protein [Populus trichocarpa]
gi|222868892|gb|EEF06023.1| methyl binding domain protein [Populus trichocarpa]
Length = 243
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKEN 162
++ WLP GW +E +VR SG DK+YF G RF SK EV +L + K
Sbjct: 6 SDDWLPEGWRVEVKVRNSGKK----DKFYFPPTGGFRFNSKIEVSRYLNGSHPKSEEKVG 61
Query: 163 SN 164
SN
Sbjct: 62 SN 63
>gi|339773549|gb|AEK05181.1| methyl-binding protein [Schistocerca gregaria]
Length = 182
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ +R SG +AG VD YY+ +G++FRSK ++ +L
Sbjct: 31 LPKGWQREEVIRKSGLSAGKVDVYYYS-PNGKKFRSKPQLARYL 73
>gi|414871560|tpg|DAA50117.1| TPA: hypothetical protein ZEAMMB73_042225 [Zea mays]
Length = 320
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L WLP GW +E VR G A + K+Y H +G R SK++VL ++
Sbjct: 97 LQRQHEWLPKGWVME--VRAGGEKADKMYKFYVHSITGLRLLSKQDVLLYI 145
>gi|427787647|gb|JAA59275.1| Putative methyl-cpg binding transcription regulator [Rhipicephalus
pulchellus]
Length = 251
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW E+ +R G +AG VD YY+ G++FRSK ++ FL
Sbjct: 12 LPKGWRREEVIRRGGLSAGKVDVYYYS-PGGKKFRSKPQLARFL 54
>gi|346472001|gb|AEO35845.1| hypothetical protein [Amblyomma maculatum]
Length = 248
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW E+ +R G +AG VD YY+ G++FRSK ++ FL
Sbjct: 9 LPKGWRREEVIRRGGLSAGKVDVYYYS-PGGKKFRSKPQLARFL 51
>gi|413947700|gb|AFW80349.1| hypothetical protein ZEAMMB73_827373 [Zea mays]
Length = 407
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 98 RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+++ WLP GW +E VR G A + K+Y H +G R SK++VL ++
Sbjct: 178 KKIKRQHEWLPKGWVME--VRAGGEKANKMYKFYVHSITGLRLLSKQDVLLYI 228
>gi|414883658|tpg|DAA59672.1| TPA: hypothetical protein ZEAMMB73_581852 [Zea mays]
Length = 393
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 98 RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+++ WLP GW +E VR G A + K+Y H +G R SK++VL ++
Sbjct: 164 KKIKRQHEWLPKGWVME--VRAGGEKADKMYKFYVHSITGLRLLSKQDVLLYI 214
>gi|348502661|ref|XP_003438886.1| PREDICTED: methyl-CpG-binding domain protein 4-like [Oreochromis
niloticus]
Length = 385
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV-LYFLETGT 154
LPPGW E R R +G TAG +D YF G+RFRS+ + + LE+G+
Sbjct: 18 LPPGWIREVRQRKAGKTAGKLD-VYFTSPEGQRFRSRASLRTFLLESGS 65
>gi|3800801|gb|AAC68875.1| testis specific methyl-CpG binding protein MBD2, partial [Homo
sapiens]
Length = 146
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 109 PGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
PGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 1 PGWKKEEVIRKSGLSAGKSDVYYF-SPSGKKFRSKPQLARYL 41
>gi|222640096|gb|EEE68228.1| hypothetical protein OsJ_26412 [Oryza sativa Japonica Group]
Length = 899
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
LP GW EDR R +G+ T D YY SG FRS K+V FL++G
Sbjct: 111 LPDGWWKEDRPRKNGSNLKT-DPYYIDPVSGYEFRSLKDVHRFLKSG 156
>gi|326489093|dbj|BAK01530.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1091
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
LP GW EDR+R G + D YY SG FRS K+V ++E+G
Sbjct: 318 LPDGWRREDRLRKDGTKS---DTYYTDPVSGYEFRSLKDVQRYIESG 361
>gi|313768101|ref|YP_004061532.1| hypothetical protein BpV1_102 [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599708|gb|ADQ91729.1| hypothetical protein BpV1_102 [Bathycoccus sp. RCC1105 virus BpV1]
Length = 250
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 111 WEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKR---------RKE 161
W ++ R SG + G D YYF G+RFRS EV FL TG K +R KE
Sbjct: 22 WYVKIETRKSGKSMGMTDNYYFS-PEGKRFRSMIEVYRFLTTGDKFERDEKTRCLKINKE 80
Query: 162 NSNADMD 168
N++ MD
Sbjct: 81 NNDEIMD 87
>gi|148223675|ref|NP_001083787.1| methyl-CpG binding domain protein 2 [Xenopus laevis]
gi|24898897|dbj|BAC23079.1| methyl-CpG binding protein MBD2 [Xenopus laevis]
Length = 267
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ +R SG +AG D YY+ +G++FRSK ++ +L
Sbjct: 11 LPAGWKKEEVIRKSGLSAGKSDVYYYS-PNGKKFRSKPQLARYL 53
>gi|260829803|ref|XP_002609851.1| hypothetical protein BRAFLDRAFT_126023 [Branchiostoma floridae]
gi|229295213|gb|EEN65861.1| hypothetical protein BRAFLDRAFT_126023 [Branchiostoma floridae]
Length = 298
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPKGWKREEVTRKSGLSAGKSDVYYYS-PSGKKFRSKPQLARYL 53
>gi|242078509|ref|XP_002444023.1| hypothetical protein SORBIDRAFT_07g006030 [Sorghum bicolor]
gi|241940373|gb|EES13518.1| hypothetical protein SORBIDRAFT_07g006030 [Sorghum bicolor]
Length = 961
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 85 GTESALTPETASTRRLTATEAWL---PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFR 141
GT+S L ST+ ++ E + P GW E R R SG+ D YY SG FR
Sbjct: 243 GTQSGLGGARLSTKTVSQDERVVEGFPDGWRKEYRPRKSGSFQ---DPYYIDPVSGYEFR 299
Query: 142 SKKEVLYFLETGTKRK 157
S K+V +L+TG R+
Sbjct: 300 SLKDVHRYLKTGDIRQ 315
>gi|218200663|gb|EEC83090.1| hypothetical protein OsI_28224 [Oryza sativa Indica Group]
Length = 676
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
LP GW EDR R +G+ T D YY SG FRS K+V FL++G
Sbjct: 111 LPDGWWKEDRPRKNGSNLKT-DPYYIDPVSGYEFRSLKDVHRFLKSG 156
>gi|357145156|ref|XP_003573545.1| PREDICTED: uncharacterized protein LOC100834821 [Brachypodium
distachyon]
Length = 1048
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
LP GW EDR R +G+T T D YY +G FRS K+V ++++G
Sbjct: 321 LPDGWRREDRPRRNGSTNKT-DPYYIDPVNGYEFRSMKDVHRYIKSG 366
>gi|340381059|ref|XP_003389039.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Amphimedon
queenslandica]
Length = 319
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW E VR +G +AG D YY+ G++FRSK ++ FL
Sbjct: 16 LPSGWRREIVVRKNGMSAGKTDVYYYS-PCGKKFRSKPQIARFL 58
>gi|297742566|emb|CBI34715.3| unnamed protein product [Vitis vinifera]
Length = 1076
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLET 152
WLP GW +E + + SG+ G K Y ++G RF SK +V +L+T
Sbjct: 38 WLPNGWILELKTQRSGSCVGKQYKCYLDPSTGYRFYSKPDVFRYLKT 84
>gi|218201848|gb|EEC84275.1| hypothetical protein OsI_30738 [Oryza sativa Indica Group]
Length = 262
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNADM 167
P GW +E +R T DKYY H +FRSK EV YFL TG K +++ +
Sbjct: 186 PDGWVVEIHLRNDQKTK---DKYYRHKDYNHKFRSKPEVEYFLNTG------KRSADVSV 236
Query: 168 DSSGSAAGSTKQKKP 182
S GS ++ K P
Sbjct: 237 PSRGSGTSASGGKGP 251
>gi|345320312|ref|XP_003430271.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein
1-like [Ornithorhynchus anatinus]
Length = 595
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G RFRSK E+ FL
Sbjct: 11 LGPGWKRRESFRKSGATCGRTDTYY-QSPTGERFRSKIELTRFL 53
>gi|24210495|dbj|BAC22082.1| methyl-CpG binding protein MBD3 [Xenopus laevis]
Length = 283
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPQGWKKEEVTRRSGLSAGKSDVYYYS-PSGKKFRSKPQLARYL 53
>gi|126323490|ref|XP_001363695.1| PREDICTED: methyl-CpG-binding domain protein 3-like [Monodelphis
domestica]
Length = 289
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPQGWKREEVTRKSGLSAGKSDVYYYS-PSGKKFRSKPQLARYL 53
>gi|413921070|gb|AFW61002.1| hypothetical protein ZEAMMB73_269384 [Zea mays]
Length = 921
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRK 157
LP GW E R R +G+ +D YY SG FRS K+V +LETG R+
Sbjct: 245 LPDGWRKEYRPRKNGSF---LDVYYIDPVSGYEFRSFKDVHRYLETGDIRQ 292
>gi|321472364|gb|EFX83334.1| hypothetical protein DAPPUDRAFT_195138 [Daphnia pulex]
Length = 252
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW E+ +R +G +AGT D +Y+ +G++FRSK +++ +L
Sbjct: 17 LPKGWTREEVIRKAGLSAGTKDIFYYS-PNGKKFRSKPQLVRYL 59
>gi|357498329|ref|XP_003619453.1| Methyl binding domain protein [Medicago truncatula]
gi|355494468|gb|AES75671.1| Methyl binding domain protein [Medicago truncatula]
Length = 459
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
++A LPPGW ++ +VR +G DK+YF +S ++F S VL +L+
Sbjct: 6 SDACLPPGWTVKVKVRKNGHK----DKFYFPPSSDQKFNSMVGVLRYLD 50
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+A LP GW ++ VR +G DKYYF +S ++F S VL +L+
Sbjct: 156 DASLPTGWTVKVNVRKNGHK----DKYYFPPSSEKKFNSMVGVLRYLDNA 201
>gi|405967697|gb|EKC32831.1| Methyl-CpG-binding domain protein 2 [Crassostrea gigas]
Length = 248
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 98 RRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
RRL LPPGW+ E+ VR SG +AG D YY G++ RSK ++
Sbjct: 4 RRLDCV--GLPPGWKREEVVRKSGLSAGKTDVYYIS-PDGKKIRSKPQL 49
>gi|115475289|ref|NP_001061241.1| Os08g0206700 [Oryza sativa Japonica Group]
gi|42761315|dbj|BAD11558.1| unknown protein [Oryza sativa Japonica Group]
gi|45735807|dbj|BAD12843.1| unknown protein [Oryza sativa Japonica Group]
gi|113623210|dbj|BAF23155.1| Os08g0206700 [Oryza sativa Japonica Group]
gi|215701075|dbj|BAG92499.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 422
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
LP GW EDR R +G+ T D YY SG FRS K+V FL++G
Sbjct: 343 LPDGWWKEDRPRKNGSNLKT-DPYYIDPVSGYEFRSLKDVHRFLKSG 388
>gi|242038991|ref|XP_002466890.1| hypothetical protein SORBIDRAFT_01g015930 [Sorghum bicolor]
gi|241920744|gb|EER93888.1| hypothetical protein SORBIDRAFT_01g015930 [Sorghum bicolor]
Length = 278
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L WLP GW +E +R G + K+Y H +G R SK++VL ++
Sbjct: 95 LQRQHEWLPKGWVME--IRAGGEKTDKMYKFYVHSITGVRLLSKQDVLLYI 143
>gi|395831632|ref|XP_003788899.1| PREDICTED: methyl-CpG-binding domain protein 3 [Otolemur garnettii]
Length = 325
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 48 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 90
>gi|115644418|ref|XP_792656.2| PREDICTED: methyl-CpG-binding domain protein 2-like
[Strongylocentrotus purpuratus]
gi|192759055|gb|ACF05485.1| methyl-CpG-binding domain type 2/3 [Hemicentrotus pulcherrimus]
Length = 274
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW+ E+ +R SG +AG D YY+ G++ RSK ++ F+
Sbjct: 27 LPAGWKREEVIRKSGLSAGKTDVYYYS-PCGKKLRSKPQLARFI 69
>gi|441656563|ref|XP_003277102.2| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 3
[Nomascus leucogenys]
Length = 298
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|242048470|ref|XP_002461981.1| hypothetical protein SORBIDRAFT_02g011480 [Sorghum bicolor]
gi|241925358|gb|EER98502.1| hypothetical protein SORBIDRAFT_02g011480 [Sorghum bicolor]
Length = 249
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
WLP GW +E +R +G + K+Y H +G R SK++VL ++
Sbjct: 62 WLPKGWVME--IRAAGEKTDKMYKFYVHSITGVRLLSKQDVLLYI 104
>gi|242079071|ref|XP_002444304.1| hypothetical protein SORBIDRAFT_07g019900 [Sorghum bicolor]
gi|241940654|gb|EES13799.1| hypothetical protein SORBIDRAFT_07g019900 [Sorghum bicolor]
Length = 317
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L WLP GW +E +R G + K+Y H +G R SK++VL ++
Sbjct: 95 LQRQREWLPKGWVLE--IRAGGEKTDKMYKFYVHSITGVRLLSKQDVLLYI 143
>gi|302563677|ref|NP_001180972.1| methyl-CpG-binding domain protein 3 [Macaca mulatta]
gi|402903577|ref|XP_003914640.1| PREDICTED: methyl-CpG-binding domain protein 3 [Papio anubis]
gi|383414137|gb|AFH30282.1| methyl-CpG-binding domain protein 3 [Macaca mulatta]
gi|387540270|gb|AFJ70762.1| methyl-CpG-binding domain protein 3 [Macaca mulatta]
Length = 291
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|242078867|ref|XP_002444202.1| hypothetical protein SORBIDRAFT_07g014920 [Sorghum bicolor]
gi|241940552|gb|EES13697.1| hypothetical protein SORBIDRAFT_07g014920 [Sorghum bicolor]
Length = 317
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L WLP GW +E +R G + K+Y H +G R SK++VL ++
Sbjct: 95 LQRQREWLPKGWVME--IRAGGEKTDKMYKFYVHSITGVRLLSKQDVLLYI 143
>gi|73987325|ref|XP_868594.1| PREDICTED: methyl-CpG-binding domain protein 3 isoform 5 [Canis
lupus familiaris]
Length = 291
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|4505119|ref|NP_003917.1| methyl-CpG-binding domain protein 3 [Homo sapiens]
gi|55647849|ref|XP_512241.1| PREDICTED: methyl-CpG-binding domain protein 3 isoform 2 [Pan
troglodytes]
gi|50400820|sp|O95983.1|MBD3_HUMAN RecName: Full=Methyl-CpG-binding domain protein 3; AltName:
Full=Methyl-CpG-binding protein MBD3
gi|3800803|gb|AAC68876.1| methyl-CpG binding domain-containing protein MBD3 [Homo sapiens]
gi|3850564|gb|AAC72104.1| methyl-CpG binding protein MBD3 [Homo sapiens]
gi|119589883|gb|EAW69477.1| methyl-CpG binding domain protein 3, isoform CRA_a [Homo sapiens]
gi|119589884|gb|EAW69478.1| methyl-CpG binding domain protein 3, isoform CRA_a [Homo sapiens]
gi|119589887|gb|EAW69481.1| methyl-CpG binding domain protein 3, isoform CRA_a [Homo sapiens]
gi|158255200|dbj|BAF83571.1| unnamed protein product [Homo sapiens]
gi|261860518|dbj|BAI46781.1| methyl-CpG binding domain protein 3 [synthetic construct]
gi|410219894|gb|JAA07166.1| methyl-CpG binding domain protein 3 [Pan troglodytes]
gi|410303042|gb|JAA30121.1| methyl-CpG binding domain protein 3 [Pan troglodytes]
gi|410335731|gb|JAA36812.1| methyl-CpG binding domain protein 3 [Pan troglodytes]
gi|410335733|gb|JAA36813.1| methyl-CpG binding domain protein 3 [Pan troglodytes]
Length = 291
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|125547542|gb|EAY93364.1| hypothetical protein OsI_15161 [Oryza sativa Indica Group]
Length = 316
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 73 REHKSENLATTNGTESALTPETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYF 132
R +S+N A N + + + + T WLP GW IE VR G + K+Y
Sbjct: 91 RFLESKNCAADNQLINNSVYVSPTMTYMQMTHEWLPKGWIIE--VRAGGKNMNKMYKFYV 148
Query: 133 HVASGRRFRSKKEVLYFL 150
+ +G R SK++VL ++
Sbjct: 149 YPPAGVRLFSKEDVLLYI 166
>gi|157818023|ref|NP_001102205.1| methyl-CpG-binding domain protein 3 [Rattus norvegicus]
gi|149034542|gb|EDL89279.1| methyl-CpG binding domain protein 3 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149034543|gb|EDL89280.1| methyl-CpG binding domain protein 3 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 286
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|7305261|ref|NP_038623.1| methyl-CpG-binding domain protein 3 [Mus musculus]
gi|50401209|sp|Q9Z2D8.1|MBD3_MOUSE RecName: Full=Methyl-CpG-binding domain protein 3; AltName:
Full=Methyl-CpG-binding protein MBD3
gi|5731992|gb|AAD48909.1|AF120995_1 methyl-CpG binding domain-containing protein 3 [Mus musculus
domesticus]
gi|3800805|gb|AAC68877.1| methyl-CpG binding domain-containing protein MBD3 [Mus musculus]
gi|148699603|gb|EDL31550.1| methyl-CpG binding domain protein 3, isoform CRA_c [Mus musculus]
gi|148699604|gb|EDL31551.1| methyl-CpG binding domain protein 3, isoform CRA_c [Mus musculus]
Length = 285
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|335282297|ref|XP_003354028.1| PREDICTED: methyl-CpG-binding domain protein 3-like isoform 2 [Sus
scrofa]
Length = 291
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|348550421|ref|XP_003461030.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein
3-like [Cavia porcellus]
Length = 367
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 88 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 130
>gi|323451743|gb|EGB07619.1| hypothetical protein AURANDRAFT_64731 [Aureococcus anophagefferens]
Length = 1992
Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 102 ATEAW-----LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
A E W + GW E R +G++AGT D+YYF G+RFRSK E+
Sbjct: 19 AVEEWGGDASMLDGWRTEVHDRPTGSSAGTTDRYYFD-EFGKRFRSKAEI 67
>gi|260781241|ref|XP_002585728.1| hypothetical protein BRAFLDRAFT_119982 [Branchiostoma floridae]
gi|229270764|gb|EEN41739.1| hypothetical protein BRAFLDRAFT_119982 [Branchiostoma floridae]
Length = 858
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
A+E LP GW + +R SGA+AG D YF+ G++FRS+ E+ + +
Sbjct: 81 ASETPLPKGWTKKVVLRQSGASAGKTDT-YFYSPEGKKFRSRTEIAKYCK 129
>gi|242038993|ref|XP_002466891.1| hypothetical protein SORBIDRAFT_01g015940 [Sorghum bicolor]
gi|241920745|gb|EER93889.1| hypothetical protein SORBIDRAFT_01g015940 [Sorghum bicolor]
Length = 219
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
WLP GW +E +R G + K+Y H +G R SK++VL ++
Sbjct: 59 WLPKGWVME--IRAGGEKTDKMYKFYVHSITGVRLLSKQDVLLYI 101
>gi|38347002|emb|CAD39866.2| OSJNBb0058J09.3 [Oryza sativa Japonica Group]
Length = 385
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+ T WLP GW IE VR G + K+Y + +G R SK++VL ++
Sbjct: 118 MQMTHEWLPKGWIIE--VRAGGKNMNKMYKFYVYPPAGVRLFSKEDVLLYI 166
>gi|116310990|emb|CAH67925.1| OSIGBa0138E08-OSIGBa0161L23.6 [Oryza sativa Indica Group]
Length = 383
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+ T WLP GW IE VR G + K+Y + +G R SK++VL ++
Sbjct: 118 MQMTHEWLPKGWIIE--VRAGGKNMNKMYKFYVYPPAGVRLFSKEDVLLYI 166
>gi|293346999|ref|XP_002726494.1| PREDICTED: methyl-CpG-binding domain protein 4 [Rattus norvegicus]
gi|392347546|ref|XP_001059437.3| PREDICTED: methyl-CpG-binding domain protein 4 [Rattus norvegicus]
Length = 566
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
+P GWE + R SG TAG VD YF G +FRSK+ + Y L+TG
Sbjct: 78 VPCGWERVVKQRLSGKTAGRVD-VYFISPQGSKFRSKRSLANYLLKTG 124
>gi|312371178|gb|EFR19428.1| hypothetical protein AND_22453 [Anopheles darlingi]
Length = 290
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 104 EAWLPPGWEIEDR-------------VRTSGA--------TAGTVDKYYFHVASGRRFRS 142
+ W+PPGW ++R VRT+ T GT D+ Y+H S RR RS
Sbjct: 166 DTWIPPGWNAQERTGWNGPPVTSQQPVRTTYQSWKSKLWETTGT-DRLYYHNPSIRRLRS 224
Query: 143 KKEVLYFLETGTKRKRRKENSNADMDSSGSAAGSTKQKKPNIKAKTSALNFDYF 196
+ + TK R N+N D + S A S Q K NI + +F ++
Sbjct: 225 PRGTVL-----TKDNRDNANANDDDELSFWAPESDNQVKLNISHQLGWEHFHHY 273
>gi|149049684|gb|EDM02138.1| rCG29635 [Rattus norvegicus]
Length = 566
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
+P GWE + R SG TAG VD YF G +FRSK+ + Y L+TG
Sbjct: 78 VPCGWERVVKQRLSGKTAGRVD-VYFISPQGSKFRSKRSLANYLLKTG 124
>gi|359490294|ref|XP_002263477.2| PREDICTED: uncharacterized protein LOC100263513 [Vitis vinifera]
Length = 637
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+++ WLPPGW++E ++ ++G K Y H + G +F SK EV +L
Sbjct: 5 SSDDWLPPGWKVEMKLTSTGRKY----KCYIHPSRGLKFYSKPEVSRYL 49
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 99 RLTATEAWLPPGWEIEDRVRTSGATAGTV--DKYYFHVASGRRFRSKKEVLYFLETG 153
R+TA LPPGW E +++ GTV D YY +G FRS K+ L +L+TG
Sbjct: 98 RVTAE--GLPPGWIKEIKIQKK---CGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTG 149
>gi|149034544|gb|EDL89281.1| methyl-CpG binding domain protein 3 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 157
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>gi|74195345|dbj|BAE28391.1| unnamed protein product [Mus musculus]
Length = 386
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETAST-RRLTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 41 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 99
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 100 PQGLKFRSKRSLANYLLKNG 119
>gi|303282183|ref|XP_003060383.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457854|gb|EEH55152.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 758
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L GW ++ ++R +GA+ GT D YYF+ G RFRS+ E + L
Sbjct: 52 LEDGWRVDMKMRLNGASEGTYDVYYFN-PEGVRFRSRAEAVRHL 94
>gi|74145383|dbj|BAE36144.1| unnamed protein product [Mus musculus]
Length = 365
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETAST-RRLTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 20 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 78
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 79 PQGLKFRSKRSLANYLLKNG 98
>gi|297741054|emb|CBI31785.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+++ WLPPGW++E ++ ++G K Y H + G +F SK EV +L
Sbjct: 5 SSDDWLPPGWKVEMKLTSTGRKY----KCYIHPSRGLKFYSKPEVSRYL 49
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 99 RLTATEAWLPPGWEIEDRVRTSGATAGTV--DKYYFHVASGRRFRSKKEVLYFLETG 153
R+TA LPPGW E +++ GTV D YY +G FRS K+ L +L+TG
Sbjct: 98 RVTAE--GLPPGWIKEIKIQKK---CGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTG 149
>gi|116487716|gb|AAI26018.1| LOC779091 protein [Xenopus laevis]
Length = 612
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 100 LTATEAW-----LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L +E W L PGW+ VR SGA+ G +D YY +G + RSK E+ +L
Sbjct: 38 LAMSEGWEDWPLLGPGWKRRISVRKSGASCGHIDIYY-RSPTGEQMRSKIELAKYL 92
>gi|15238536|ref|NP_200788.1| methyl-CPG-binding domain 7 protein [Arabidopsis thaliana]
gi|75171028|sp|Q9FJF4.1|MBD7_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 7;
Short=AtMBD7; Short=MBD07; AltName:
Full=Methyl-CpG-binding protein MBD7
gi|9757900|dbj|BAB08347.1| unnamed protein product [Arabidopsis thaliana]
gi|50198785|gb|AAT70426.1| At5g59800 [Arabidopsis thaliana]
gi|53828603|gb|AAU94411.1| At5g59800 [Arabidopsis thaliana]
gi|332009852|gb|AED97235.1| methyl-CPG-binding domain 7 protein [Arabidopsis thaliana]
Length = 306
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 84 NGTESALTPETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSK 143
N E L RR + + LP GW +E++ R S + +D+ Y +G +FRS
Sbjct: 161 NSIEQQL--RVLQNRRGHSKDFRLPDGWIVEEKPRRSSSH---IDRSYIEPGTGNKFRSM 215
Query: 144 KEV-LYFLETGTKRKRRKENSNADMDSSGSAAGSTK----QKKPNIKAKTSALNFDYFNS 198
V Y + G N +DS S S + + I+ ++ ++ N
Sbjct: 216 AAVERYLISVG----------NITLDSV-SMVHSERLPLLMNRNGIRFQSEVIDP---NP 261
Query: 199 PENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLT 239
P+ V+WVLT +T + V V+ W+ AF L
Sbjct: 262 PKKVKWVLTGSGGNMFTANVRGSNVSSLVKHTWSEAFVSLI 302
>gi|307103473|gb|EFN51733.1| hypothetical protein CHLNCDRAFT_139929 [Chlorella variabilis]
Length = 1890
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW ++ +R +GA+AG +D YY+ G+RF+S +V L
Sbjct: 734 LPFGWSVKAAIRQNGASAGGIDAYYYS-PGGKRFKSMVKVAEAL 776
>gi|29692025|gb|AAO91664.1| methyl-CpG binding protein 2/3 [Branchiostoma floridae]
Length = 326
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP W+ E+ R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 11 LPKEWKREEVTRKSGLSAGKSDVYYYS-PSGKKFRSKPQLARYL 53
>gi|323451008|gb|EGB06887.1| hypothetical protein AURANDRAFT_65285 [Aureococcus anophagefferens]
Length = 2320
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 79 NLATTNGTESALTPETASTRRLTAT--EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVAS 136
NL N +++ T A R + A A L GW VR G TAGT D YYF
Sbjct: 806 NLKGLNSNQASDTCVAALARYVEACGGSADLIDGWTATVEVRKEGNTAGTYDVYYFD-PL 864
Query: 137 GRRFRSKKEV 146
GRR+RS+ EV
Sbjct: 865 GRRYRSRAEV 874
>gi|218201847|gb|EEC84274.1| hypothetical protein OsI_30737 [Oryza sativa Indica Group]
Length = 242
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTK 155
P GW +E +R T DKYY H +FRSK EV FL+TG +
Sbjct: 178 PDGWVVEIHLRNDQKTK---DKYYRHKDYNHKFRSKPEVQSFLDTGKR 222
>gi|432102921|gb|ELK30351.1| Methyl-CpG-binding domain protein 1 [Myotis davidii]
Length = 589
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E++ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELIRYL 53
>gi|413918019|gb|AFW57951.1| methyl-binding domain MBD113 protein [Zea mays]
Length = 482
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 94 TASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
+A L + WLP GW IE VR G +DK Y +RF SK EVL+F+ G
Sbjct: 142 SAEDNELHESHTWLPRGWVIE--VRAGGK---KMDKMY------KRFLSKAEVLHFVNKG 190
Query: 154 TKRKRRKENSNADMD 168
S DMD
Sbjct: 191 MV-------STCDMD 198
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164
WLP GW +E G++ KYY SG F SK E L++L +G + + + ++
Sbjct: 87 GWLPDGWTME----VCQEDNGSIYKYYTSPMSGYMFTSKMETLHYLFSGVEERMLELQAS 142
Query: 165 AD 166
A+
Sbjct: 143 AE 144
>gi|187960081|ref|NP_034904.2| methyl-CpG-binding domain protein 4 [Mus musculus]
gi|19353797|gb|AAH24812.1| Methyl-CpG binding domain protein 4 [Mus musculus]
Length = 554
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETAST-RRLTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 41 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 99
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 100 PQGLKFRSKRSLANYLLKNG 119
>gi|413918018|gb|AFW57950.1| hypothetical protein ZEAMMB73_700231 [Zea mays]
Length = 198
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 47 DAAPPATS-----GSNTTTTNDQTSKKRGTIREHKSENLATTNGTESALTPETASTRRLT 101
DA+PP + + +ND T K+ T+ K L + L
Sbjct: 41 DASPPQLADHTRENNGLVISNDNTLKQ--TVEVEKQGRQGKEVLVVHELDESNEDSGSLD 98
Query: 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKE 161
WLP GW +E G++ KYY SG F SK E L++L +G + + +
Sbjct: 99 EPPGWLPDGWTME----VCQEDNGSIYKYYTSPMSGYMFTSKMETLHYLFSGVEERMLEL 154
Query: 162 NSNAD 166
++A+
Sbjct: 155 QASAE 159
>gi|50401208|sp|Q9Z2D7.1|MBD4_MOUSE RecName: Full=Methyl-CpG-binding domain protein 4; AltName:
Full=Methyl-CpG-binding protein MBD4; AltName:
Full=Mismatch-specific DNA N-glycosylase
gi|5929746|gb|AAD56595.1|AF120996_1 methyl-CpG binding protein 4 [Mus musculus domesticus]
gi|3800807|gb|AAC68878.1| methyl-CpG binding protein MBD4 [Mus musculus]
Length = 554
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETAST-RRLTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 41 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 99
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 100 PQGLKFRSKRSLANYLLKNG 119
>gi|70671597|gb|AAZ06230.1| hypothetical protein TQH17P5.8 [Oryza sativa Indica Group]
gi|70671603|gb|AAZ06235.1| hypothetical protein TQH17P5.8 [Oryza sativa Indica Group]
Length = 241
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTK 155
P GW +E +R T DKYY H +FRSK EV FL+TG +
Sbjct: 178 PDGWVVEIHLRNDQKTK---DKYYRHKDYNHKFRSKPEVQSFLDTGKR 222
>gi|222641233|gb|EEE69365.1| hypothetical protein OsJ_28702 [Oryza sativa Japonica Group]
Length = 242
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTK 155
P GW +E +R T DKYY H +FRSK EV FL+TG +
Sbjct: 178 PDGWVVEIHLRNDQKTK---DKYYRHKDYNHKFRSKPEVKSFLDTGKR 222
>gi|148667124|gb|EDK99540.1| methyl-CpG binding domain protein 4 [Mus musculus]
Length = 554
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETASTRR-LTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 41 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 99
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 100 PQGLKFRSKRSLANYLLKNG 119
>gi|125589512|gb|EAZ29862.1| hypothetical protein OsJ_13921 [Oryza sativa Japonica Group]
Length = 411
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL-----ETGTKRKRR 159
WLP GW +E + GT+ +YY SGR F K EVL++L + T+ K R
Sbjct: 40 GWLPDGWIMEVYL----GDDGTIYRYYICPVSGRTFTMKSEVLHYLFSEMDQCFTESKNR 95
Query: 160 KENSN 164
SN
Sbjct: 96 AVGSN 100
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRR 159
LT T WLP GW +E +R G + K+Y + + R SK +VL ++
Sbjct: 101 LTRTHEWLPKGWLVE--IRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYI--------- 149
Query: 160 KENSNADMDSSGSAAGSTKQ 179
KE + D+ G ST++
Sbjct: 150 KEMKISGFDTDGQCNTSTQE 169
>gi|148225943|ref|NP_001080512.1| methyl-CpG binding domain protein 1 [Xenopus laevis]
gi|27694795|gb|AAH43835.1| Mbd1-prov protein [Xenopus laevis]
Length = 321
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 103 TEAW-----LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+E W L PGW+ + VR SGAT G D YY +G++ RS+ E+ +L
Sbjct: 2 SEGWEDWPLLGPGWKRRNVVRKSGATCGHSDTYY-RSPAGKKIRSRIELAKYL 53
>gi|334350404|ref|XP_001371626.2| PREDICTED: methyl-CpG-binding domain protein 1-like [Monodelphis
domestica]
Length = 644
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ FL
Sbjct: 11 LGPGWKRREASRKSGATCGRTDTYY-QSPTGERIRSKVELTRFL 53
>gi|50251614|dbj|BAD29477.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 254
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG 153
P GW +E +R T DKYY H +FRSK EV FL+TG
Sbjct: 178 PDGWVVEIHLRNDQKTK---DKYYRHKDYNHKFRSKPEVKSFLDTG 220
>gi|395847220|ref|XP_003796279.1| PREDICTED: methyl-CpG-binding domain protein 4 [Otolemur garnettii]
Length = 574
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 70 GTIREHKSENLATTNGTESALTPE--TASTRR----LTATEAWLPPGWEIEDRVRTSGAT 123
G R + + +E L P+ AST+ +T + +P GWE + R SG T
Sbjct: 42 GLARVEDEKQMMIKRNSECNLLPQEPIASTQLGGTAVTESHKSVPCGWERVVKQRLSGKT 101
Query: 124 AGTVDKYYFHVASGRRFRSKKEVLYFL 150
AG D YY G +FRSK + +L
Sbjct: 102 AGRFDVYYIS-PQGLKFRSKSSLANYL 127
>gi|147778238|emb|CAN74037.1| hypothetical protein VITISV_023406 [Vitis vinifera]
Length = 730
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+++ WLPPGW++E ++ ++G K Y H + G +F SK EV +L
Sbjct: 5 SSDDWLPPGWKVEMKLTSTGRKY----KCYIHPSRGLKFYSKPEVSRYL 49
>gi|308802656|ref|XP_003078641.1| CDC6 protein (ISS) [Ostreococcus tauri]
gi|116057094|emb|CAL51521.1| CDC6 protein (ISS) [Ostreococcus tauri]
Length = 813
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 82 TTNGTESALTPETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFR 141
TT A+ A R + + W E R R SG +AG DK YF+ G RFR
Sbjct: 2 TTQDAREAIRDLRAYVRAKERVDIYDIGEWRAEIRFRKSGDSAGVKDK-YFYAPCGTRFR 60
Query: 142 SKKEVLYF 149
S+K+V F
Sbjct: 61 SQKDVRAF 68
>gi|443694004|gb|ELT95247.1| hypothetical protein CAPTEDRAFT_180602 [Capitella teleta]
Length = 119
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
LPPGW E+ VR SG +AG D YY G R RSK ++
Sbjct: 14 LPPGWRREENVRKSGLSAGKTDVYYIS-PDGTRVRSKPQL 52
>gi|270342074|gb|ACZ74659.1| methyl-CpG binding protein [Phaseolus vulgaris]
Length = 298
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 199 PENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFT 236
P+ V WVL+ P EG W PF+ + V E+ R W+ AF
Sbjct: 254 PDKVSWVLSGP-EGFWNPFVDGLAVTEAERLKWSEAFV 290
>gi|347971013|ref|XP_003436675.1| AGAP003982-PB [Anopheles gambiae str. PEST]
gi|333469591|gb|EGK97349.1| AGAP003982-PB [Anopheles gambiae str. PEST]
Length = 304
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
A LP GW+ E+ +R +G +AG VD YY+ +G++ SK ++
Sbjct: 13 AALPKGWQREEVLRKTGLSAGKVDVYYYS-PTGKKIESKPQL 53
>gi|395546804|ref|XP_003775127.1| PREDICTED: uncharacterized protein LOC100923299 [Sarcophilus
harrisii]
Length = 488
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ FL
Sbjct: 11 LGPGWKRRESFRKSGATCGRSDTYY-QSPTGERIRSKVELRRFL 53
>gi|223996861|ref|XP_002288104.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977220|gb|EED95547.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 615
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW E R +G +AG+ D Y++ +FRS K V F+
Sbjct: 546 LPAGWTTETYERQTGKSAGSKDTYFYSPVKKLKFRSAKSVKLFI 589
>gi|395749896|ref|XP_003780589.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 2
[Pongo abelii]
Length = 299
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFH 133
LPPGW+ E+ +R SG +AG D YYF
Sbjct: 85 LPPGWKKEEVIRKSGLSAGKSDVYYFR 111
>gi|5901737|gb|AAD55389.1|AF170346_1 methyl-CpG binding protein MBD3 [Xenopus laevis]
Length = 282
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 110 GWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
GW+ E+ R SG +AG D YY+ SG++FRSK ++ +L
Sbjct: 13 GWKKEEVTRRSGLSAGKSDVYYYS-PSGKKFRSKPQLARYL 52
>gi|367043042|ref|XP_003651901.1| hypothetical protein THITE_2143262 [Thielavia terrestris NRRL 8126]
gi|346999163|gb|AEO65565.1| hypothetical protein THITE_2143262 [Thielavia terrestris NRRL 8126]
Length = 934
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 11 HDPNPNLHKPEPKESVNLFSTVNVPPDPLLDSGFFIDAAPPATS-GSNTTTTNDQTSKKR 69
H N + K+ V +F++++ L S FF+D P T G TT D+T + R
Sbjct: 590 HLHNMLVQTGRLKKPVEIFASIST----LFQSAFFLDGKIPTTGFGKALTTLYDKTGRYR 645
Query: 70 GTIREHKSENLATTNGTESALTPET 94
T+ A + G S L+P+T
Sbjct: 646 ATLARANRRADARSGGVHSTLSPDT 670
>gi|432110910|gb|ELK34384.1| Methyl-CpG-binding domain protein 4 [Myotis davidii]
Length = 1112
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+T +P GWEI + R SG TAG D YF G +FRSK + +L
Sbjct: 87 MTECHKPVPCGWEIVVKQRLSGKTAGRYD-VYFISPQGLKFRSKSSLANYL 136
>gi|356557449|ref|XP_003547028.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding
domain-containing protein 7-like [Glycine max]
Length = 250
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 199 PENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNG 244
P V WVL+ P G W+PF+ VPES + W+ AF L+ ++G
Sbjct: 200 PAKVSWVLSSPG-GFWSPFLDDSIVPESEKLKWSKAFV-LSIHDDG 243
>gi|255085606|ref|XP_002505234.1| predicted protein [Micromonas sp. RCC299]
gi|226520503|gb|ACO66492.1| predicted protein [Micromonas sp. RCC299]
Length = 1628
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYF 149
L GW +E ++R +GAT G D YYF+ RFRS+ E + +
Sbjct: 63 LEDGWRVEMKMRLNGATEGQYDVYYFN-PEDVRFRSRAEAVRY 104
>gi|335279477|ref|XP_003121489.2| PREDICTED: methyl-CpG-binding domain protein 1 [Sus scrofa]
Length = 536
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236715|ref|XP_003267545.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Nomascus
leucogenys]
Length = 655
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|5777946|gb|AAD51443.1|AF078831_1 methyl-CpG binding protein splice variant 2 [Homo sapiens]
Length = 586
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|397513935|ref|XP_003827260.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Pan
paniscus]
Length = 655
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395822931|ref|XP_003784756.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Otolemur
garnettii]
Length = 593
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236729|ref|XP_003267552.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 9 [Nomascus
leucogenys]
Length = 574
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236713|ref|XP_003267544.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Nomascus
leucogenys]
gi|332236731|ref|XP_003267553.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 10 [Nomascus
leucogenys]
Length = 605
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849916|ref|XP_512130.3| PREDICTED: uncharacterized protein LOC455418 isoform 9 [Pan
troglodytes]
gi|397513939|ref|XP_003827262.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Pan
paniscus]
Length = 630
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462151|ref|NP_001191067.1| methyl-CpG-binding domain protein 1 isoform 8 [Homo sapiens]
Length = 629
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462149|ref|NP_001191066.1| methyl-CpG-binding domain protein 1 isoform 7 [Homo sapiens]
gi|194378484|dbj|BAG63407.1| unnamed protein product [Homo sapiens]
gi|261858622|dbj|BAI45833.1| methyl-CpG binding domain protein 1 [synthetic construct]
Length = 630
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|2239126|emb|CAA71735.1| methyl-CpG binding protein [Homo sapiens]
Length = 556
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236737|ref|XP_003267556.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 13 [Nomascus
leucogenys]
Length = 656
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 37 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 79
>gi|332236725|ref|XP_003267550.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 7 [Nomascus
leucogenys]
Length = 556
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385950|ref|XP_004059459.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 655
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749872|ref|XP_003779020.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Pongo
abelii]
Length = 586
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236727|ref|XP_003267551.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 8 [Nomascus
leucogenys]
Length = 630
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849910|ref|XP_003315950.1| PREDICTED: uncharacterized protein LOC455418 isoform 1 [Pan
troglodytes]
gi|410221324|gb|JAA07881.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410267102|gb|JAA21517.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410294438|gb|JAA25819.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410335985|gb|JAA36939.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
Length = 655
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462163|ref|NP_001191080.1| methyl-CpG-binding domain protein 1 isoform 13 [Homo sapiens]
Length = 536
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462147|ref|NP_001191065.1| methyl-CpG-binding domain protein 1 isoform 6 [Homo sapiens]
Length = 655
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|21464115|ref|NP_056670.2| methyl-CpG-binding domain protein 1 isoform 2 [Homo sapiens]
gi|119583370|gb|EAW62966.1| methyl-CpG binding domain protein 1, isoform CRA_e [Homo sapiens]
Length = 586
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|144704702|gb|ABP02056.1| methyl-CpG binding domain protein 1 variant 8 [Homo sapiens]
Length = 536
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385956|ref|XP_004059462.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 5 [Gorilla
gorilla gorilla]
Length = 556
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|5777944|gb|AAD51442.1|AF078830_1 methyl-CpG binding protein splice variant 1 [Homo sapiens]
Length = 605
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|21464119|ref|NP_056723.2| methyl-CpG-binding domain protein 1 isoform 5 [Homo sapiens]
gi|119583368|gb|EAW62964.1| methyl-CpG binding domain protein 1, isoform CRA_c [Homo sapiens]
Length = 556
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749875|ref|XP_003779021.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 5 [Pongo
abelii]
Length = 630
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749868|ref|XP_003779018.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Pongo
abelii]
Length = 655
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|149720937|ref|XP_001499413.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 5 [Equus
caballus]
Length = 583
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385958|ref|XP_004059463.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 6 [Gorilla
gorilla gorilla]
gi|426385966|ref|XP_004059467.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 10 [Gorilla
gorilla gorilla]
Length = 630
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|21464117|ref|NP_056671.2| methyl-CpG-binding domain protein 1 isoform 1 [Homo sapiens]
gi|323462153|ref|NP_001191068.1| methyl-CpG-binding domain protein 1 isoform 1 [Homo sapiens]
gi|50401200|sp|Q9UIS9.2|MBD1_HUMAN RecName: Full=Methyl-CpG-binding domain protein 1; AltName:
Full=CXXC-type zinc finger protein 3; AltName:
Full=Methyl-CpG-binding protein MBD1; AltName:
Full=Protein containing methyl-CpG-binding domain 1
gi|119583369|gb|EAW62965.1| methyl-CpG binding domain protein 1, isoform CRA_d [Homo sapiens]
Length = 605
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749877|ref|XP_003779022.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 6 [Pongo
abelii]
Length = 536
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849926|ref|XP_003315957.1| PREDICTED: uncharacterized protein LOC455418 isoform 8 [Pan
troglodytes]
Length = 656
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 37 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 79
>gi|332849920|ref|XP_003315954.1| PREDICTED: uncharacterized protein LOC455418 isoform 5 [Pan
troglodytes]
gi|410221322|gb|JAA07880.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410267100|gb|JAA21516.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410294436|gb|JAA25818.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
gi|410335983|gb|JAA36938.1| methyl-CpG binding domain protein 1 [Pan troglodytes]
Length = 605
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|194380002|dbj|BAG58353.1| unnamed protein product [Homo sapiens]
Length = 656
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 37 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 79
>gi|338727997|ref|XP_003365596.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 533
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|296222659|ref|XP_002757280.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2
[Callithrix jacchus]
Length = 668
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 37 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 79
>gi|149720933|ref|XP_001499382.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Equus
caballus]
Length = 553
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385948|ref|XP_004059458.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426385962|ref|XP_004059465.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 8 [Gorilla
gorilla gorilla]
Length = 605
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|391341628|ref|XP_003745129.1| PREDICTED: methyl-CpG-binding domain protein 2-like [Metaseiulus
occidentalis]
Length = 251
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL 147
E LP GW E++ R G +AG VD Y+ G+R+R+K++++
Sbjct: 3 ELLLPKGWRREEQARKLGLSAGKVDVSYYG-PDGQRYRNKQQLV 45
>gi|390473975|ref|XP_002757279.2| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1
[Callithrix jacchus]
Length = 642
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|334821934|gb|AEG90859.1| methyl-CpG-binding domain protein 2 [Apostichopus japonicus]
Length = 95
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 12/60 (20%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSNAD 166
LP GW+ E+ +R SG +AG D YY FRS K+ L G ++ +R +N D
Sbjct: 12 LPTGWKREEVIRKSGLSAGKTDIYY--------FRSGKQ----LSVGARKSKRLKNIQYD 59
>gi|124111383|gb|ABM92100.1| MBD1 [Pan troglodytes]
Length = 592
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426253822|ref|XP_004020590.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Ovis
aries]
Length = 557
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|403268207|ref|XP_003926170.1| PREDICTED: methyl-CpG-binding domain protein 1 [Saimiri boliviensis
boliviensis]
Length = 940
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 309 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 351
>gi|395822929|ref|XP_003784755.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Otolemur
garnettii]
Length = 543
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|297702598|ref|XP_002828265.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Pongo
abelii]
Length = 605
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|149720931|ref|XP_001499371.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Equus
caballus]
Length = 602
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|383418417|gb|AFH32422.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 606
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|348576643|ref|XP_003474096.1| PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain protein
1-like [Cavia porcellus]
Length = 633
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVYRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|338728001|ref|XP_003365598.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 652
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849918|ref|XP_003315953.1| PREDICTED: uncharacterized protein LOC455418 isoform 4 [Pan
troglodytes]
gi|397513941|ref|XP_003827263.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Pan
paniscus]
gi|343958670|dbj|BAK63190.1| methyl-CpG-binding domain protein 1 [Pan troglodytes]
Length = 574
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236719|ref|XP_003267547.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Nomascus
leucogenys]
Length = 549
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462155|ref|NP_001191069.1| methyl-CpG-binding domain protein 1 isoform 9 [Homo sapiens]
Length = 574
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|55727757|emb|CAH90629.1| hypothetical protein [Pongo abelii]
Length = 605
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385960|ref|XP_004059464.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 7 [Gorilla
gorilla gorilla]
Length = 574
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|5777948|gb|AAD51444.1|AF078832_1 methyl-CpG binding protein splice variant 3 [Homo sapiens]
Length = 549
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|402903116|ref|XP_003914425.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Papio
anubis]
Length = 630
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|383418415|gb|AFH32421.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
gi|384947076|gb|AFI37143.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 655
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|124054431|gb|ABM89443.1| MBD1 [Pongo pygmaeus]
Length = 592
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977694|ref|XP_003995236.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 5 [Felis
catus]
Length = 558
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749879|ref|XP_003779023.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 7 [Pongo
abelii]
Length = 574
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|356520740|ref|XP_003529018.1| PREDICTED: methyl-CpG-binding domain-containing protein 7-like
[Glycine max]
Length = 251
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKR 156
LT++ LP GW +E+R R S + VD+YY+ + R+FRS V L TG R
Sbjct: 37 LTSSHFRLPDGWVVEERPRASNPSH--VDRYYYEPGTRRQFRSLLSVKRHL-TGETR 90
>gi|297275298|ref|XP_001098362.2| PREDICTED: methyl-CpG-binding domain protein 1-like isoform 1
[Macaca mulatta]
Length = 630
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|5739181|gb|AAD50371.1| methyl-CpG binding protein 1 [Homo sapiens]
Length = 605
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|417411861|gb|JAA52351.1| Putative methyl-cpg binding transcription regulator, partial
[Desmodus rotundus]
Length = 598
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 28 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 70
>gi|156105673|ref|NP_056669.2| methyl-CpG-binding domain protein 1 isoform 3 [Homo sapiens]
gi|21620082|gb|AAH33242.1| Methyl-CpG binding domain protein 1 [Homo sapiens]
gi|119583366|gb|EAW62962.1| methyl-CpG binding domain protein 1, isoform CRA_a [Homo sapiens]
Length = 549
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|402903118|ref|XP_003914426.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Papio
anubis]
Length = 574
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|380812832|gb|AFE78290.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 556
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323447507|gb|EGB03425.1| hypothetical protein AURANDRAFT_72724 [Aureococcus anophagefferens]
Length = 1291
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 117 VRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
VR G+TAGT D YY+ SGRRFRS+ EV
Sbjct: 336 VRKEGSTAGTSDIYYYD-DSGRRFRSRAEV 364
>gi|149720935|ref|XP_001499360.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Equus
caballus]
Length = 546
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|444728934|gb|ELW69368.1| Methyl-CpG-binding domain protein 1 [Tupaia chinensis]
Length = 598
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|355701946|gb|EHH29299.1| hypothetical protein EGK_09681 [Macaca mulatta]
gi|355755028|gb|EHH58895.1| hypothetical protein EGM_08857 [Macaca fascicularis]
gi|380812826|gb|AFE78287.1| methyl-CpG-binding domain protein 1 isoform 1 [Macaca mulatta]
gi|380812830|gb|AFE78289.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
gi|383410407|gb|AFH28417.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
gi|384947074|gb|AFI37142.1| methyl-CpG-binding domain protein 1 isoform 1 [Macaca mulatta]
Length = 605
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|307104195|gb|EFN52450.1| hypothetical protein CHLNCDRAFT_54503 [Chlorella variabilis]
Length = 1547
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV 146
L GW +E ++R SG + GT D YYF +R+RS+ E+
Sbjct: 47 LEEGWRVEVKIRGSGTSLGTTDAYYFS-PGNKRYRSRMEI 85
>gi|383418411|gb|AFH32419.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 599
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236717|ref|XP_003267546.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Nomascus
leucogenys]
Length = 550
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385952|ref|XP_004059460.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Gorilla
gorilla gorilla]
Length = 549
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426249701|ref|XP_004018588.1| PREDICTED: methyl-CpG-binding domain protein 4 [Ovis aries]
Length = 554
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRR 159
+T +P GWE + R SG TAG D YF G++FRS+ ++ +L + +
Sbjct: 74 MTECRKSVPCGWERVVKQRASGKTAGKYD-VYFISPQGQKFRSRVSLVNYLHQSGETSLK 132
Query: 160 KENSNADMDSSGSAAGSTKQKKPNIKAKTSALNF 193
E+ + + GS K + T+AL F
Sbjct: 133 PEDFDFSVRPKGSIKSGCKGR------NTAALTF 160
>gi|383418413|gb|AFH32420.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 609
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385954|ref|XP_004059461.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Gorilla
gorilla gorilla]
Length = 550
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462159|ref|NP_001191071.1| methyl-CpG-binding domain protein 1 isoform 11 [Homo sapiens]
gi|31414478|emb|CAD92308.1| methyl-CpG binding domain protein 1, splice form 6 [Homo sapiens]
gi|119583367|gb|EAW62963.1| methyl-CpG binding domain protein 1, isoform CRA_b [Homo sapiens]
Length = 550
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849912|ref|XP_003315951.1| PREDICTED: uncharacterized protein LOC455418 isoform 2 [Pan
troglodytes]
gi|397513937|ref|XP_003827261.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Pan
paniscus]
Length = 550
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977690|ref|XP_003995234.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Felis
catus]
Length = 594
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977686|ref|XP_003995232.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Felis
catus]
gi|410977698|ref|XP_003995238.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 7 [Felis
catus]
Length = 607
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332236733|ref|XP_003267554.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 11 [Nomascus
leucogenys]
Length = 567
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|281348710|gb|EFB24294.1| hypothetical protein PANDA_020519 [Ailuropoda melanoleuca]
Length = 576
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|417412028|gb|JAA52430.1| Putative methyl-cpg binding transcription regulator, partial
[Desmodus rotundus]
Length = 629
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 28 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 70
>gi|114050963|ref|NP_001039946.1| methyl-CpG-binding domain protein 1 [Bos taurus]
gi|86437962|gb|AAI12459.1| Methyl-CpG binding domain protein 1 [Bos taurus]
gi|296473709|tpg|DAA15824.1| TPA: methyl-CpG binding domain protein 1 [Bos taurus]
Length = 642
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|7710143|ref|NP_002375.1| methyl-CpG-binding domain protein 1 isoform 4 [Homo sapiens]
gi|5777950|gb|AAD51445.1|AF078833_1 methyl-CpG binding protein splice variant 4 [Homo sapiens]
gi|119583371|gb|EAW62967.1| methyl-CpG binding domain protein 1, isoform CRA_f [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|417411980|gb|JAA52407.1| Putative methyl-cpg binding transcription regulator, partial
[Desmodus rotundus]
Length = 621
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 28 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 70
>gi|410977692|ref|XP_003995235.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 4 [Felis
catus]
Length = 663
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|395749870|ref|XP_003779019.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 3 [Pongo
abelii]
Length = 550
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|67968403|dbj|BAE00563.1| unnamed protein product [Macaca fascicularis]
Length = 566
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|440895457|gb|ELR47635.1| Methyl-CpG-binding domain protein 1 [Bos grunniens mutus]
Length = 644
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|432960276|ref|XP_004086443.1| PREDICTED: uncharacterized protein LOC101167186 [Oryzias latipes]
Length = 1142
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + + G+ FRSK E+L YF + G
Sbjct: 279 LPQGWTRKLKQRKSGRSAGKFDVYLIN-SEGKAFRSKVELLAYFQKIG 325
>gi|431896198|gb|ELK05614.1| Methyl-CpG-binding domain protein 1 [Pteropus alecto]
Length = 639
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|380812828|gb|AFE78288.1| methyl-CpG-binding domain protein 1 isoform 6 [Macaca mulatta]
Length = 559
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|338727999|ref|XP_003365597.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 638
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977688|ref|XP_003995233.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 2 [Felis
catus]
Length = 551
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|194374621|dbj|BAG62425.1| unnamed protein product [Homo sapiens]
Length = 535
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977702|ref|XP_003995240.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 9 [Felis
catus]
gi|410977704|ref|XP_003995241.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 10 [Felis
catus]
Length = 632
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849922|ref|XP_003315955.1| PREDICTED: uncharacterized protein LOC455418 isoform 6 [Pan
troglodytes]
Length = 535
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462161|ref|NP_001191072.1| methyl-CpG-binding domain protein 1 isoform 12 [Homo sapiens]
Length = 535
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|297275300|ref|XP_002800978.1| PREDICTED: methyl-CpG-binding domain protein 1-like isoform 2
[Macaca mulatta]
Length = 550
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|338728011|ref|XP_003365603.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 500
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|332849924|ref|XP_003315956.1| PREDICTED: uncharacterized protein LOC455418 isoform 7 [Pan
troglodytes]
Length = 567
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|323462157|ref|NP_001191070.1| methyl-CpG-binding domain protein 1 isoform 10 [Homo sapiens]
Length = 567
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|345803421|ref|XP_537343.3| PREDICTED: methyl-CpG-binding domain protein 1 [Canis lupus
familiaris]
Length = 634
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 14 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 56
>gi|338728003|ref|XP_003365599.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 627
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426385964|ref|XP_004059466.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 9 [Gorilla
gorilla gorilla]
Length = 567
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|426253820|ref|XP_004020589.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 1 [Ovis
aries]
Length = 575
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|338728005|ref|XP_003365600.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 571
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|338728009|ref|XP_003365602.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 532
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977696|ref|XP_003995237.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 6 [Felis
catus]
Length = 505
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|449446179|ref|XP_004140849.1| PREDICTED: uncharacterized protein LOC101215200 [Cucumis sativus]
Length = 522
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG-----TKRKRRK 160
LPPGW ++ +VR SG DK Y +G RS ++V +L +G T + R +
Sbjct: 9 LLPPGWTVKVKVRKSGKK----DKSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQ 64
Query: 161 ENSNADM 167
++N +
Sbjct: 65 RDNNIEF 71
>gi|38346533|emb|CAE04540.2| OSJNBa0040D17.8 [Oryza sativa Japonica Group]
Length = 377
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRR 159
LT T WLP GW +E +R G + K+Y + + R SK +VL ++
Sbjct: 67 LTRTHEWLPKGWLVE--IRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYI--------- 115
Query: 160 KENSNADMDSSGSAAGSTKQ 179
KE + D+ G ST++
Sbjct: 116 KEMKISGFDTDGQCNTSTQE 135
>gi|449520114|ref|XP_004167079.1| PREDICTED: uncharacterized protein LOC101225631 [Cucumis sativus]
Length = 487
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETG-----TKRKRRK 160
LPPGW ++ +VR SG DK Y +G RS ++V +L +G T + R +
Sbjct: 9 LLPPGWTVKVKVRKSGKK----DKSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQ 64
Query: 161 ENSNADM 167
++N +
Sbjct: 65 RDNNIEF 71
>gi|338728007|ref|XP_003365601.1| PREDICTED: methyl-CpG-binding domain protein 1 [Equus caballus]
Length = 557
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|301789485|ref|XP_002930161.1| PREDICTED: methyl-CpG-binding domain protein 1-like [Ailuropoda
melanoleuca]
Length = 643
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|410977700|ref|XP_003995239.1| PREDICTED: methyl-CpG-binding domain protein 1 isoform 8 [Felis
catus]
Length = 576
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|351710467|gb|EHB13386.1| Methyl-CpG-binding domain protein 1 [Heterocephalus glaber]
Length = 622
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVYRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|222628431|gb|EEE60563.1| hypothetical protein OsJ_13925 [Oryza sativa Japonica Group]
Length = 337
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRR 159
LT T WLP GW +E +R G + K+Y + + R SK +VL ++
Sbjct: 101 LTRTHEWLPKGWLVE--IRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYI--------- 149
Query: 160 KENSNADMDSSGSAAGSTKQ 179
KE + D+ G +T++
Sbjct: 150 KEMKISGFDTDGQCNTNTQE 169
>gi|224178107|ref|YP_002600885.1| hypothetical protein PypaC_p003 [Pyramimonas parkeae]
gi|215882774|gb|ACJ71147.1| hypothetical protein [Pyramimonas parkeae]
Length = 510
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 92 PETASTRRLTATEAWLPPGWEIEDRV--RTSGATAGTVDKYYFHVASGR----RFRSKKE 145
P ST +L+ + + E ED V + AT G + K F V + R+++KKE
Sbjct: 39 PFMRSTFKLSRLDGKVTKNLEGEDFVFEEKAFATEGLMKKRGFGVKYNKEEEDRYQNKKE 98
Query: 146 VLYFLETG-TKRKRRKENSNADMDSSGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEW 204
+LYF + G KR + + S K+ N+KA + ++F+YF E +
Sbjct: 99 ILYFCKKGEYKRSKNRIGRAYTKQKRISYEMELKRDATNLKASKNQVSFEYFLLVEPNKE 158
Query: 205 VLTDPSEGSWTPFIG-KVEVPESVRQDWAAAFTDL 238
D E + F +E P + F DL
Sbjct: 159 AFLDLLERDFKNFFKPFLEFPLFSPLNLKFFFEDL 193
>gi|348540401|ref|XP_003457676.1| PREDICTED: hypothetical protein LOC100704200 [Oreochromis
niloticus]
Length = 1032
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 53 TSGSNTTTTNDQTSKKRGTIREHKSENLA--TTNGTESALTPETASTRRLTAT------- 103
TS S +T QT ++ T SE +A + G+ESA E+A + R +
Sbjct: 112 TSASTSTAQQPQTGLEQQT---QMSEPVAGPSEPGSESAGGSESAGSSRQRRSIIRDRGP 168
Query: 104 ---EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
+ LP GW + + R SG +AG D Y + + G+ FRSK E++ YF + G
Sbjct: 169 LYDDPSLPEGWTRKLKQRKSGRSAGKFDVYLIN-SEGKAFRSKVELIAYFQKVG 221
>gi|124013742|gb|ABM88148.1| MBD1 [Macaca nemestrina]
Length = 142
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|327280386|ref|XP_003224933.1| PREDICTED: methyl-CpG-binding domain protein 4-like [Anolis
carolinensis]
Length = 530
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 56 SNTTTTNDQTSKKRGTI--REHKSENLATTNGTESALTPETASTRRLTATEAWLPPGWEI 113
SN T D +KR + K E T G E E A + +P GWE
Sbjct: 16 SNEHVTEDINKEKREATAHLDPKKEETKTIQGKED----EPAVSLSACLCHKGVPEGWER 71
Query: 114 EDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YF---LETGTK 155
+ R +G TAG D YF G++ RSK +L YF ETG K
Sbjct: 72 IVKQRQAGKTAGKYD-IYFVSPQGKKLRSKHALLDYFKKNRETGLK 116
>gi|357141571|ref|XP_003572272.1| PREDICTED: uncharacterized protein LOC100826562 [Brachypodium
distachyon]
Length = 278
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 93 ETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
+ A+ L +T WLP GW IE +R G + K+Y + R SK++VL +++
Sbjct: 94 KCAARNTLHSTHLWLPKGWFIE--IRAGGENMDKMFKFYIYPPMEIRLFSKEDVLLYVK 150
>gi|241631815|ref|XP_002410284.1| conserved hypothetical protein [Ixodes scapularis]
gi|215503366|gb|EEC12860.1| conserved hypothetical protein [Ixodes scapularis]
Length = 686
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LPPGW + R +G +AG D Y F G++FRS+ E+ LE
Sbjct: 30 LPPGWYRKVTQRQAGRSAGKFDVYIFS-PEGKKFRSRNELQAHLE 73
>gi|410899959|ref|XP_003963464.1| PREDICTED: methyl-CpG-binding domain protein 4-like [Takifugu
rubripes]
Length = 257
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+PPGW E R R +G TAG +D Y G +FRSK + FL
Sbjct: 24 MPPGWIREVRQRKTGKTAGKLDVYIIS-PQGLKFRSKTSLQAFL 66
>gi|38345980|emb|CAE01991.2| OSJNBb0033G08.7 [Oryza sativa Japonica Group]
Length = 418
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 100 LTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRR 159
LT T WLP GW +E +R G + K+Y + + R SK +VL ++
Sbjct: 90 LTRTHEWLPKGWLVE--IRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYI--------- 138
Query: 160 KENSNADMDSSGSAAGSTKQ 179
KE + D+ G +T++
Sbjct: 139 KEMKISGFDTDGQCNTNTQE 158
>gi|224009227|ref|XP_002293572.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970972|gb|EED89308.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1057
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
P GW + R G T G D+++F RFR+KK + F++
Sbjct: 988 FPSGWIAKTYRRAGGETVGKTDRFWFSPGRNIRFRAKKHAMTFID 1032
>gi|442570448|pdb|3VYQ|A Chain A, Crystal Structure Of The Methyl Cpg Binding Domain Of Mbd4
In Complex With The 5mcg/tg Sequence In Space Group P1
gi|442570451|pdb|3VYQ|D Chain D, Crystal Structure Of The Methyl Cpg Binding Domain Of Mbd4
In Complex With The 5mcg/tg Sequence In Space Group P1
Length = 74
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 101 TATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
TATE +P GWE + R SG TAG D YF G +FRSK+ + Y L+ G
Sbjct: 3 TATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFISPQGLKFRSKRSLANYLLKNG 57
>gi|11514253|pdb|1D9N|A Chain A, Solution Structure Of The Methyl-Cpg-Binding Domain Of The
Methylation-Dependent Transcriptional Repressor Mbd1PCM1
gi|14488681|pdb|1IG4|A Chain A, Solution Structure Of The Methyl-Cpg-Binding Domain Of
Human Mbd1 In Complex With Methylated Dna
Length = 75
Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>gi|147907162|ref|NP_001081854.1| methyl CpG binding protein 2 (Rett syndrome) [Xenopus laevis]
gi|4105999|gb|AAD02651.1| methyl-CpG-binding protein 2 [Xenopus laevis]
gi|4139226|gb|AAD03736.1| methyl-CpG-binding protein MeCP2 [Xenopus laevis]
Length = 467
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + +G+ FRSK E++ YF + G
Sbjct: 101 LPEGWTRKLKQRKSGRSAGKFDVYLIN-PNGKAFRSKVELIAYFQKVG 147
>gi|363808068|ref|NP_001242214.1| uncharacterized protein LOC100779601 [Glycine max]
gi|255634513|gb|ACU17620.1| unknown [Glycine max]
Length = 261
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTK-------RKRR 159
LP GW +E + R S + DKYY+ +GR+FRS V L T+ +
Sbjct: 43 LPDGWVVEKKPRPSHES--RFDKYYYEPGTGRKFRSLLSVQRHLAGETRDYVVANTMMPK 100
Query: 160 KENSNADMDSSGSAAGSTK 178
EN+N SG GS +
Sbjct: 101 NENTNFIESGSGQKFGSLR 119
>gi|47211430|emb|CAF93409.1| unnamed protein product [Tetraodon nigroviridis]
Length = 681
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + + G+ FRSK E++ YF + G
Sbjct: 34 LPEGWTRKLKQRKSGRSAGKFDVYLIN-SEGKAFRSKVELIAYFQKVG 80
>gi|213982783|ref|NP_001135563.1| methyl CpG binding protein 2 (Rett syndrome) [Xenopus (Silurana)
tropicalis]
gi|195539664|gb|AAI68054.1| Unknown (protein for MGC:185616) [Xenopus (Silurana) tropicalis]
Length = 466
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + +G+ FRSK E++ YF + G
Sbjct: 101 LPEGWTRKLKQRKSGRSAGKFDVYLIN-PNGKAFRSKVELIAYFQKVG 147
>gi|159163105|pdb|1UB1|A Chain A, Solution Structure Of The Matrix Attachment Region-Binding
Domain Of Chicken Mecp2
Length = 133
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETGTKRKRRKENSNA 165
LP GW + + R SG +AG D Y + G+ FRSK E++ YF + G + ++
Sbjct: 38 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFEKVGDT---SLDPNDF 93
Query: 166 DMDSSGSAAGSTKQKKPNIKAKT 188
D +G + S ++++P KAK+
Sbjct: 94 DFTVTGRGSPSRREQRPPKKAKS 116
>gi|302843023|ref|XP_002953054.1| hypothetical protein VOLCADRAFT_105771 [Volvox carteri f.
nagariensis]
gi|300261765|gb|EFJ45976.1| hypothetical protein VOLCADRAFT_105771 [Volvox carteri f.
nagariensis]
Length = 2579
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW ++R G +AG D YY GR RS+ EVL L
Sbjct: 134 LPQGWMGVYKMRVGGNSAGQYDLYY-KSPEGRMIRSRAEVLRIL 176
>gi|62204887|gb|AAH93116.1| Mecp2 protein [Danio rerio]
Length = 523
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + G+ FRSK E++ YF + G
Sbjct: 108 LPQGWTRKLKQRKSGRSAGKFDVYLIN-PEGKAFRSKVELMAYFQKVG 154
>gi|255584788|ref|XP_002533112.1| hypothetical protein RCOM_0391080 [Ricinus communis]
gi|223527103|gb|EEF29284.1| hypothetical protein RCOM_0391080 [Ricinus communis]
Length = 176
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 39/144 (27%)
Query: 129 KYYFHVASGRRFRSKKEVLYFL---------------------ETGTKRKRRKENSNADM 167
+YY+ + GR+FRS + +L E GT ++ R S
Sbjct: 30 QYYYEPSIGRQFRSLSSIQKYLSEKIDVAPKRLKPGNETNCYIEPGTGKQFRSLISVERY 89
Query: 168 DSSGSAAGSTKQKKPNIK---------------AKTSALNFDYFNSPENVEWVLTDPSEG 212
+ G +T + N K KTS + D N P ++WVL P
Sbjct: 90 LTEGKIYEATPKALTNGKEYLTTHKALKLGEHTVKTSLV--DLHNPPVRIKWVL-GPRGN 146
Query: 213 SWTPFIGKVEVPESVRQDWAAAFT 236
+W+P I + ESV+ W F
Sbjct: 147 AWSPLIDDTRILESVKHKWFETFV 170
>gi|327264237|ref|XP_003216921.1| PREDICTED: methyl-CpG-binding protein 2-like [Anolis carolinensis]
Length = 778
Score = 36.6 bits (83), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LP GW + + R SG +AG D Y + G+ FRSK E++ + E
Sbjct: 399 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFE 442
>gi|47086573|ref|NP_997901.1| methyl-CpG-binding protein 2 [Danio rerio]
gi|37574906|gb|AAP57248.2| methyl-cytosine binding protein 2 [Danio rerio]
Length = 524
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVL-YFLETG 153
LP GW + + R SG +AG D Y + G+ FRSK E++ YF + G
Sbjct: 109 LPQGWTRKLKQRKSGRSAGKFDVYLIN-PEGKAFRSKVELMAYFQKVG 155
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.123 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,683,084
Number of Sequences: 23463169
Number of extensions: 172803444
Number of successful extensions: 487093
Number of sequences better than 100.0: 595
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 511
Number of HSP's that attempted gapping in prelim test: 486088
Number of HSP's gapped (non-prelim): 1322
length of query: 248
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 109
effective length of database: 9,097,814,876
effective search space: 991661821484
effective search space used: 991661821484
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.5 bits)