BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045019
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 7/220 (3%)
Query: 33 NVPPDPLLDSGFFIDAAPPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTESA-LT 91
+ PPDPLL SG FI +A T S+ Q E S + NGT+
Sbjct: 8 DFPPDPLLASGAFISSAGDGTLDSSAKRRPIQGGIGISGSGE--SVRIGMANGTDQVNHQ 65
Query: 92 PETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
E+ S +R + WLPPGW +ED++RTSGATAG+VDKYY+ +GR+FRS+ EVLY+LE
Sbjct: 66 TESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLE 125
Query: 152 TGTKRK--RRKENSNADMDS-SGSAAGSTKQKKPNIKAKTSALNFDYFNSPENVEWVLTD 208
GT ++ ++ EN+ + D G + + L+FD+ N P+ V W + +
Sbjct: 126 HGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPPPPLDFDFKNPPDKVSWSMAN 185
Query: 209 PSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKIC 248
E W P IG V+V +SVR+DW+ AFT TS N SK+
Sbjct: 186 AGEEGWIPNIGDVKVQDSVRRDWSTAFT-FITSRNPSKVS 224
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 101/180 (56%), Gaps = 15/180 (8%)
Query: 83 TNGTESALTP--------ETASTRRLT-ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFH 133
+NGT+ A P ++ S +R T + WLPP W E RVRTSG AGTVDK+Y+
Sbjct: 2 SNGTDQAQPPPENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYE 61
Query: 134 VASGRRFRSKKEVLYFLETGT-KRKRRKENSNADMDSS-----GSAAGSTKQKKPNIKAK 187
+GR+FRSK EVLY+LE GT K+K K N D S GSA TK K +
Sbjct: 62 PITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPP 121
Query: 188 TSALNFDYFNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLTTSNNGSKI 247
LNFD+ N PE V W + SE +W PFIG ++ ESV QDW FT +T+ N G +
Sbjct: 122 PKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNAGKTM 181
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 197
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LPPGW+ E+ +R SG +AG D YYF SG++FRSK ++ +L
Sbjct: 158 LPPGWKKEEVIRKSGLSAGKSDVYYFS-PSGKKFRSKPQLARYL 200
>sp|O95983|MBD3_HUMAN Methyl-CpG-binding domain protein 3 OS=Homo sapiens GN=MBD3 PE=1
SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>sp|Q9Z2D8|MBD3_MOUSE Methyl-CpG-binding domain protein 3 OS=Mus musculus GN=Mbd3 PE=1
SV=1
Length = 285
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GWE E+ R SG +AG D +Y+ SG++FRSK ++ +L
Sbjct: 11 LPQGWEREEVPRRSGLSAGHRDVFYYS-PSGKKFRSKPQLARYL 53
>sp|Q9FJF4|MBD7_ARATH Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis
thaliana GN=MBD7 PE=1 SV=1
Length = 306
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 84 NGTESALTPETASTRRLTATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSK 143
N E L RR + + LP GW +E++ R S + +D+ Y +G +FRS
Sbjct: 161 NSIEQQL--RVLQNRRGHSKDFRLPDGWIVEEKPRRSSSH---IDRSYIEPGTGNKFRSM 215
Query: 144 KEV-LYFLETGTKRKRRKENSNADMDSSGSAAGSTK----QKKPNIKAKTSALNFDYFNS 198
V Y + G N +DS S S + + I+ ++ ++ N
Sbjct: 216 AAVERYLISVG----------NITLDSV-SMVHSERLPLLMNRNGIRFQSEVIDP---NP 261
Query: 199 PENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTDLT 239
P+ V+WVLT +T + V V+ W+ AF L
Sbjct: 262 PKKVKWVLTGSGGNMFTANVRGSNVSSLVKHTWSEAFVSLI 302
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
LP GW +E+ R + + +DKYY +G+RFRS V +L
Sbjct: 116 LPRGWSVEEVPRKN---SHYIDKYYVERKTGKRFRSLVSVERYL 156
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 78 ENLATTNGTESALTPETAST-RRLTATEAW--LPPGWEIEDRVRTSGATAGTVDKYYFHV 134
++L ++ S L TAST TATE +P GWE + R SG TAG D YF
Sbjct: 41 KDLVISSERSSLLQEPTASTLSSTTATEGHKPVPCGWERVVKQRLSGKTAGKFD-VYFIS 99
Query: 135 ASGRRFRSKKEVL-YFLETG 153
G +FRSK+ + Y L+ G
Sbjct: 100 PQGLKFRSKRSLANYLLKNG 119
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 OS=Homo sapiens GN=MBD1 PE=1
SV=2
Length = 605
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
L PGW+ + R SGAT G D YY +G R RSK E+ +L
Sbjct: 11 LGPGWKRREVFRKSGATCGRSDTYY-QSPTGDRIRSKVELTRYL 53
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LP GW + + R SG +AG D Y + G+ FRSK E++ + E
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFE 143
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LP GW + + R SG +AG D Y + G+ FRSK E++ + E
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFE 143
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LP GW + + R SG +AG D Y + G+ FRSK E++ + E
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFE 143
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLE 151
LP GW + + R SG +AG D Y + G+ FRSK E++ + E
Sbjct: 100 LPEGWTRKLKQRKSGRSAGKYDVYLIN-PQGKAFRSKVELIAYFE 143
>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus musculus GN=Mbd1 PE=1
SV=2
Length = 636
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 104 EAW-----LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
E+W L PGW+ + R SGA+ G D YY +G + RSK E+ +L
Sbjct: 3 ESWQDCPALGPGWKRRESFRKSGASFGRSDIYY-QSPTGEKIRSKVELTRYL 53
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 107 LPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFL 150
+P GWE + R G TAG D YF G +FRSK + +L
Sbjct: 86 VPCGWERVVKQRLFGKTAGRFD-VYFISPQGLKFRSKSSLANYL 128
>sp|O94467|OYEC_SCHPO Putative NADPH dehydrogenase C23G7.10c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC23G7.10c PE=3 SV=1
Length = 395
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 61 TNDQTSKKRGTIREHKSENLATTNGTESALTPETASTRRLTATEAWLP--PGWEIEDRV 117
TND+ K GT + + + A+ R+TAT+ WLP GWEIED V
Sbjct: 223 TNDRNDKYGGTFEKRILFPMEVVHSVRKAIPDSMPLFYRVTATD-WLPKGQGWEIEDTV 280
>sp|A1KEW6|Y182_MYCBP Putative S-adenosyl-L-methionine-dependent methyltransferase
BCG_0182 OS=Mycobacterium bovis (strain BCG / Pasteur
1173P2) GN=BCG_0182 PE=3 SV=1
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 FNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTD 237
+ P+ + + T +E TP G+ EVP +RQDW AA D
Sbjct: 131 IDQPKVLSYKSTTLAENGVTPSAGRREVPADLRQDWPAALRD 172
>sp|A5TYM1|Y153_MYCTA Putative S-adenosyl-L-methionine-dependent methyltransferase
MRA_0153 OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=MRA_0153 PE=3 SV=1
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 FNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTD 237
+ P+ + + T +E TP G+ EVP +RQDW AA D
Sbjct: 131 IDQPKVLSYKSTTLAENGVTPSAGRREVPADLRQDWPAALRD 172
>sp|Q7U2R2|Y151_MYCBO Putative S-adenosyl-L-methionine-dependent methyltransferase Mb0151
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=Mb0151 PE=3 SV=1
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 FNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTD 237
+ P+ + + T +E TP G+ EVP +RQDW AA D
Sbjct: 131 IDQPKVLSYKSTTLAENGVTPSAGRREVPADLRQDWPAALRD 172
>sp|P96823|Y146_MYCTU Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0146
OS=Mycobacterium tuberculosis GN=Rv0146 PE=3 SV=3
Length = 310
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 196 FNSPENVEWVLTDPSEGSWTPFIGKVEVPESVRQDWAAAFTD 237
+ P+ + + T +E TP G+ EVP +RQDW AA D
Sbjct: 131 IDQPKVLSYKSTTLAENGVTPSAGRREVPADLRQDWPAALRD 172
>sp|Q6SW62|PPR_HCMVM Protease precursor OS=Human cytomegalovirus (strain Merlin) GN=UL80
PE=3 SV=1
Length = 708
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV-----------LYF---LETG 153
P GWE R G G K + H SG + +KE L F E G
Sbjct: 482 PSGWE-----RYDGGHRGQSQKQHRHGGSGGHNKRRKETAAASSSSSDEDLSFPGEAEHG 536
Query: 154 TKRKRRKENSNADMDSSGSAAGSTKQKK 181
RKR K + N+D SG AGS +Q++
Sbjct: 537 RARKRLKSHVNSD-GGSGGHAGSNQQQQ 563
>sp|P16753|PPR_HCMVA Protease precursor OS=Human cytomegalovirus (strain AD169) GN=UL80
PE=1 SV=1
Length = 708
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 20/88 (22%)
Query: 108 PPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEV-----------LYF---LETG 153
P GWE R G G K + H SG + +KE L F E G
Sbjct: 482 PSGWE-----RYDGGHRGQSQKQHRHGGSGGHNKRRKETAAASSSSSDEDLSFPGEAEHG 536
Query: 154 TKRKRRKENSNADMDSSGSAAGSTKQKK 181
RKR K + N+D SG AGS +Q++
Sbjct: 537 RARKRLKSHVNSD-GGSGGHAGSNQQQQ 563
>sp|Q54FD2|PKS38_DICDI Probable polyketide synthase 38 OS=Dictyostelium discoideum GN=pks38
PE=3 SV=1
Length = 3133
Score = 31.2 bits (69), Expect = 7.9, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 59 TTTNDQTSKKRGTIREHKSENLATTNGTESALTPETASTRR-LTATEAWLPPGWEIED 115
+ +N ++SK+ T HK++NL T T ++L + ST+ LT+ ++ WEI +
Sbjct: 3065 SKSNGKSSKRYSTFHIHKNQNLLLTTFTINSLLKMSNSTKELLTSIGSYNHQDWEINE 3122
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis
GN=pds5a-b PE=1 SV=1
Length = 1323
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 50 PPATSGSNTTTTNDQTSKKRGTIREHKSENLATTNGTES--ALTPETASTRRLTA 102
PP + + ND+TSK G R+ + N ++ E+ A P+ ST + TA
Sbjct: 1261 PPKSESQGSAAKNDETSKPSGRGRKRAAANQESSGAQEAANAKVPKQDSTAKKTA 1315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.123 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,538,359
Number of Sequences: 539616
Number of extensions: 3921372
Number of successful extensions: 10366
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 10073
Number of HSP's gapped (non-prelim): 317
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)