Query 045019
Match_columns 248
No_of_seqs 109 out of 166
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c2i_A Methyl-CPG-binding prot 99.8 8.2E-20 2.8E-24 143.9 7.5 63 101-164 18-80 (97)
2 3vxv_A Methyl-CPG-binding doma 99.8 1.7E-19 5.9E-24 133.8 7.1 61 103-164 2-62 (69)
3 1ub1_A MECP2, attachment regio 99.8 5.6E-19 1.9E-23 145.9 10.9 62 102-164 33-94 (133)
4 2ky8_A Methyl-CPG-binding doma 99.8 3.8E-19 1.3E-23 132.8 7.5 59 101-164 7-65 (72)
5 1d9n_A Methyl-CPG-binding prot 99.8 1.7E-19 5.9E-24 135.9 5.0 58 102-164 6-63 (75)
6 1ymz_A CC45; artificial protei 83.8 1.2 4E-05 29.0 3.6 28 103-138 5-32 (43)
7 2jv4_A Peptidyl-prolyl CIS/tra 83.0 1.3 4.3E-05 30.9 3.8 40 104-150 5-50 (54)
8 2ysh_A GAS-7, growth-arrest-sp 82.6 1.9 6.4E-05 27.5 4.2 29 103-139 4-32 (40)
9 1wr3_A Ubiquitin-protein ligas 82.5 1.5 5.1E-05 27.4 3.6 27 105-139 3-29 (36)
10 2ysg_A Syntaxin-binding protei 82.4 1.9 6.6E-05 27.8 4.2 27 104-138 5-31 (40)
11 2law_A Yorkie homolog; YAP, SM 82.4 1.2 4.1E-05 28.5 3.2 26 105-138 5-30 (38)
12 2ysf_A E3 ubiquitin-protein li 81.7 1.8 6.3E-05 28.0 3.9 27 104-138 5-31 (40)
13 1wr4_A Ubiquitin-protein ligas 81.6 1.8 6.2E-05 26.7 3.8 27 105-139 3-29 (36)
14 1wr7_A NEDD4-2; all-beta, liga 81.3 1.7 5.7E-05 28.2 3.6 28 104-139 6-33 (41)
15 1e0m_A Wwprototype; SH3 protot 80.0 2.2 7.6E-05 26.5 3.8 27 105-139 2-28 (37)
16 2kyk_A E3 ubiquitin-protein li 78.8 2.4 8.3E-05 27.0 3.7 27 105-139 5-31 (39)
17 2l4j_A YES-associated protein 77.9 2.5 8.4E-05 28.3 3.7 27 104-138 9-35 (46)
18 2djy_A SMAD ubiquitination reg 77.6 2.4 8.3E-05 27.9 3.5 26 105-138 6-31 (42)
19 1i5h_W Rnedd4, ubiquitin ligas 77.0 2.5 8.5E-05 28.8 3.6 27 104-138 9-35 (50)
20 1wmv_A WWOX, WW domain contain 77.0 3.1 0.00011 28.8 4.1 28 103-138 8-35 (54)
21 2dmv_A Itchy homolog E3 ubiqui 76.6 3.9 0.00013 26.7 4.3 28 104-139 5-32 (43)
22 2kpz_A E3 ubiquitin-protein li 76.3 2.3 7.7E-05 28.7 3.2 27 104-138 10-36 (49)
23 2ez5_W Dnedd4, E3 ubiquitin-pr 75.1 3.7 0.00013 27.4 4.0 27 104-138 8-34 (46)
24 2jmf_A E3 ubiquitin-protein li 74.5 3.6 0.00012 28.5 3.9 27 104-138 16-42 (53)
25 1yw5_A Peptidyl prolyl CIS/tra 73.6 6 0.00021 32.3 5.7 43 105-154 6-54 (177)
26 2ysb_A Salvador homolog 1 prot 72.8 4.8 0.00016 27.3 4.1 27 104-138 9-35 (49)
27 2zaj_A Membrane-associated gua 71.4 4.2 0.00015 27.7 3.6 27 104-138 11-37 (49)
28 2ysc_A Amyloid beta A4 precurs 69.8 5 0.00017 26.2 3.5 27 104-139 6-32 (39)
29 2kxq_A E3 ubiquitin-protein li 68.1 5.2 0.00018 29.7 3.8 27 104-138 7-33 (90)
30 2ho2_A Fe65 protein, amyloid b 67.8 5.5 0.00019 25.9 3.4 25 105-138 2-26 (38)
31 2yse_A Membrane-associated gua 67.6 5 0.00017 28.6 3.5 30 104-141 11-40 (60)
32 2e45_A Fe65 protein, amyloid b 63.7 6.4 0.00022 28.2 3.4 28 103-139 16-43 (55)
33 2dwv_A Salvador homolog 1 prot 62.6 7.3 0.00025 26.4 3.4 26 105-138 12-37 (49)
34 2ysd_A Membrane-associated gua 60.2 10 0.00036 26.5 3.9 27 104-138 12-38 (57)
35 1tk7_A CG4244-PB; WW domain, n 55.4 9.8 0.00034 28.0 3.3 28 104-139 10-37 (88)
36 2jx8_A Hpcif1, phosphorylated 47.6 5.7 0.0002 27.3 0.8 29 104-139 8-36 (52)
37 3tc5_A Peptidyl-prolyl CIS-tra 42.3 21 0.00073 29.1 3.6 28 104-138 7-34 (166)
38 3maz_A Signal-transducing adap 36.3 39 0.0013 27.1 4.2 44 111-160 63-106 (125)
39 1jmq_A YAP65, 65 kDa YES-assoc 36.3 18 0.00061 23.6 1.9 26 104-137 6-31 (46)
40 3l4h_A E3 ubiquitin-protein li 35.4 38 0.0013 26.9 4.0 25 104-136 70-94 (109)
41 1fme_A FSD-EY peptide; beta-BE 35.2 22 0.00076 22.1 2.0 19 135-153 7-25 (28)
42 2l5f_A PRE-mRNA-processing fac 33.7 29 0.001 25.7 2.9 32 104-143 9-40 (92)
43 2kvh_A Zinc finger and BTB dom 32.9 45 0.0015 17.0 2.9 21 131-151 4-24 (27)
44 2kvf_A Zinc finger and BTB dom 32.1 43 0.0015 17.1 2.7 21 131-151 4-24 (28)
45 1o6w_A PRP40, PRE-mRNA process 31.2 19 0.00065 25.3 1.4 26 106-139 40-65 (75)
46 2m0d_A Zinc finger and BTB dom 28.9 59 0.002 16.4 3.0 22 131-152 4-25 (30)
47 2elx_A Zinc finger protein 406 28.3 55 0.0019 17.6 2.9 22 131-152 8-29 (35)
48 2els_A Zinc finger protein 406 27.3 51 0.0017 18.1 2.6 26 126-151 5-30 (36)
49 1znf_A 31ST zinc finger from X 27.2 34 0.0012 17.3 1.7 21 131-151 2-22 (27)
50 1srk_A Zinc finger protein ZFP 26.9 62 0.0021 17.5 2.9 22 131-152 8-29 (35)
51 2kvg_A Zinc finger and BTB dom 26.7 58 0.002 16.8 2.7 21 131-151 4-24 (27)
52 1ard_A Yeast transcription fac 26.5 44 0.0015 17.0 2.1 22 131-152 3-24 (29)
53 1e0n_A Hypothetical protein; Y 26.0 61 0.0021 19.4 2.9 22 109-139 1-22 (27)
54 2elt_A Zinc finger protein 406 25.9 65 0.0022 17.5 2.9 24 128-151 7-30 (36)
55 2elq_A Zinc finger protein 406 25.5 67 0.0023 17.6 2.9 25 128-152 7-31 (36)
56 2m0f_A Zinc finger and BTB dom 25.4 73 0.0025 16.0 2.9 21 131-151 3-23 (29)
57 2ab3_A ZNF29; zinc finger prot 25.2 72 0.0024 16.1 2.9 17 135-151 9-25 (29)
58 2elr_A Zinc finger protein 406 24.3 49 0.0017 18.0 2.1 23 129-151 8-30 (36)
59 2ysi_A Transcription elongatio 24.0 1E+02 0.0034 19.8 3.8 27 105-139 6-32 (40)
60 1rik_A E6APC1 peptide; E6-bind 23.7 52 0.0018 16.8 2.1 21 131-151 3-23 (29)
61 1p7a_A BF3, BKLF, kruppel-like 21.4 61 0.0021 17.8 2.2 22 130-151 11-32 (37)
62 2elv_A Zinc finger protein 406 20.6 87 0.003 17.1 2.7 25 128-152 7-31 (36)
No 1
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.80 E-value=8.2e-20 Score=143.92 Aligned_cols=63 Identities=29% Similarity=0.512 Sum_probs=57.4
Q ss_pred ccCCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccccCCc
Q 045019 101 TATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164 (248)
Q Consensus 101 ~~~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~en~~ 164 (248)
...+++||+||++|+++|++|.++|++|+|||+| +|++|||+.||++||+.......+.++|+
T Consensus 18 ~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~~g~~~~~~~~Fd 80 (97)
T 3c2i_A 18 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEKVGDTSLDPNDFD 80 (97)
T ss_dssp CCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHHHTCCSSCTTTCC
T ss_pred ccCCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHHCCCCCCCHhhcc
Confidence 4678899999999999999999999999999999 89999999999999997665556778887
No 2
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.79 E-value=1.7e-19 Score=133.82 Aligned_cols=61 Identities=33% Similarity=0.512 Sum_probs=54.9
Q ss_pred CCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccccCCc
Q 045019 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164 (248)
Q Consensus 103 ~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~en~~ 164 (248)
.|..||+||.||+++|++|.++|+.|+||++| +|+||||+.||++||+.......+.++|+
T Consensus 2 ~~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP-~Gkk~RSk~ev~~yL~~~~~~~l~~~~Fd 62 (69)
T 3vxv_A 2 GHKPVPCGWERVVKQRLSGKTAGKFDVYFISP-QGLKFRSKRSLANYLLKNGETFLKPEDFN 62 (69)
T ss_dssp --CCSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHHHCCCCCCGGGSC
T ss_pred CCCcCCCCCEEEEEEeccCCCCCcceEEEEcC-CCCEeeCHHHHHHHHHhCCCCCCCHHHcc
Confidence 46789999999999999999999999999999 89999999999999999876666778887
No 3
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.78 E-value=5.6e-19 Score=145.92 Aligned_cols=62 Identities=29% Similarity=0.513 Sum_probs=58.1
Q ss_pred cCCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccccCCc
Q 045019 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164 (248)
Q Consensus 102 ~~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~en~~ 164 (248)
..|++||+||+||+++|++|.++|++|+|||+| +|++|||+.||++||+.......+.++|+
T Consensus 33 ~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~~~~~~~~~~e~Fd 94 (133)
T 1ub1_A 33 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEKVGDTSLDPNDFD 94 (133)
T ss_dssp SCCCCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHTTSCCCSCCGGGCC
T ss_pred cCCCCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHHHCCccCCCHhHCc
Confidence 788999999999999999999999999999999 89999999999999998776667779998
No 4
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.78 E-value=3.8e-19 Score=132.79 Aligned_cols=59 Identities=37% Similarity=0.679 Sum_probs=53.7
Q ss_pred ccCCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccccCCc
Q 045019 101 TATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164 (248)
Q Consensus 101 ~~~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~en~~ 164 (248)
..++++||+||.||+++|++|.++|+.|+|||+| +|++|||+.||++||..+ .+.++|+
T Consensus 7 ~~~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~~----l~~~~Fd 65 (72)
T 2ky8_A 7 RTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA----VDLSCFD 65 (72)
T ss_dssp EEECSSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTTS----SCCTTCB
T ss_pred cccCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhcC----CChhhcC
Confidence 4577899999999999999999999999999999 999999999999999883 5667776
No 5
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.77 E-value=1.7e-19 Score=135.91 Aligned_cols=58 Identities=34% Similarity=0.503 Sum_probs=52.9
Q ss_pred cCCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccccCCc
Q 045019 102 ATEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRKENSN 164 (248)
Q Consensus 102 ~~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~en~~ 164 (248)
..|+.||+||+||+++|++|.++|+.|+|||+| +|++|||+.||++||+. .++.++|+
T Consensus 6 ~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~----~~~~~~Fd 63 (75)
T 1d9n_A 6 LDCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP----ACDLTLFD 63 (75)
T ss_dssp EECTTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT----TCCCTTCC
T ss_pred ccCCCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc----CCCccccC
Confidence 468899999999999999999999999999999 99999999999999974 45667776
No 6
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=83.76 E-value=1.2 Score=29.00 Aligned_cols=28 Identities=39% Similarity=0.770 Sum_probs=17.7
Q ss_pred CCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 103 ~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
.+..||+||.... -.+| .+||+.-.++.
T Consensus 5 ~~~~LP~gW~~~~--~~~G------r~YY~n~~T~~ 32 (43)
T 1ymz_A 5 RSMPLPPGWERRT--DVEG------KVYYFNVRTLT 32 (43)
T ss_dssp --CCCCSSEEEEE--CTTS------CEEEEETTTTE
T ss_pred cCCCCCCCCEEEE--CCCC------CEEEEECCCCC
Confidence 3568999996652 2233 47899886664
No 7
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=83.03 E-value=1.3 Score=30.87 Aligned_cols=40 Identities=23% Similarity=0.521 Sum_probs=24.0
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe------eecHHHHHHHH
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR------FRSKKEVLYFL 150 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK------FRSK~EV~rYL 150 (248)
...||+||.... -+..| -.||+...|+.. -....+|..|+
T Consensus 5 ~~~LP~GW~~~~-~~~~G------r~YY~N~~T~~sqWe~P~~~~~~~l~~~~ 50 (54)
T 2jv4_A 5 NTGLPAGWEVRH-SNSKN------LPYYFNPATRESRWEPPADTDMETLKMYM 50 (54)
T ss_dssp CCCCCSSCCEEE-CSSSS------CEEEEETTTTEEESSCCTTSCHHHHHHHH
T ss_pred CCCCCCCcEEEE-ECCCC------CEEEEECCCCcEEecCCCCccHHHHHHHH
Confidence 357999997431 22233 479999877763 23445555554
No 8
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=82.57 E-value=1.9 Score=27.54 Aligned_cols=29 Identities=28% Similarity=0.668 Sum_probs=18.8
Q ss_pred CCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 103 ~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
....||+||.... -..| .+||+...++..
T Consensus 4 ~~~~LP~gW~~~~--d~~G------r~YY~n~~T~~t 32 (40)
T 2ysh_A 4 GSSGLPPGWQSYL--SPQG------RRYYVNTTTNET 32 (40)
T ss_dssp CCSSCCTTCEEEE--CTTS------CEEEECSSSCCE
T ss_pred CCCCCCCCceEEE--CCCC------CEEEEECCCCCE
Confidence 3467999995442 2333 478998877654
No 9
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=82.54 E-value=1.5 Score=27.42 Aligned_cols=27 Identities=33% Similarity=0.656 Sum_probs=18.5
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
..||+||....- .+| .+||++-.++..
T Consensus 3 ~~LP~GWe~~~d--~~G------~~Yy~n~~t~~t 29 (36)
T 1wr3_A 3 PPLPPGWEEKVD--NLG------RTYYVNHNNRST 29 (36)
T ss_dssp SCSCTTEEEEEC--SSS------CEEEEETTTCCE
T ss_pred CCCCCCCEEEEC--CCC------CEEEEECCCCCE
Confidence 469999976632 233 479998876653
No 10
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=82.44 E-value=1.9 Score=27.81 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=17.7
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.. -..| -+|||+-.++.
T Consensus 5 ~~~LP~gWe~~~--~~~G------r~Yy~nh~t~~ 31 (40)
T 2ysg_A 5 SSGLPYGWEEAY--TADG------IKYFINHVTQT 31 (40)
T ss_dssp SSCCCTTEEEEE--CSSS------CEEEEESSSCC
T ss_pred cCCCCCCcEEEE--cCCC------CEEEEECCCCc
Confidence 357999996553 2333 47999886554
No 11
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=82.36 E-value=1.2 Score=28.53 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=18.3
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
..||+||....- .+| .+|||+-.++.
T Consensus 5 ~~LP~gWe~~~~--~~G------~~Yy~nh~t~~ 30 (38)
T 2law_A 5 GPLPDGWEQAMT--QDG------EIYYINHKNKT 30 (38)
T ss_dssp CCCSSSCCEEEE--TTT------EEEEEETTTTE
T ss_pred CCCCCCcEEEEC--CCC------CEEEEECCCCC
Confidence 469999977643 333 48999886654
No 12
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=81.67 E-value=1.8 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=17.9
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+- .+| -+|||+-.+..
T Consensus 5 ~~~LP~gWe~~~~--~~G------~~Yy~nh~t~~ 31 (40)
T 2ysf_A 5 SSGLPEGWEMRFT--VDG------IPYFVDHNRRT 31 (40)
T ss_dssp CCCCCSSEEEEEC--TTC------CEEEEETTTCC
T ss_pred cCCCCcCcEEEEc--CCC------CEEEEECCCCc
Confidence 4579999976632 333 47898876543
No 13
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=81.65 E-value=1.8 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=17.8
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
..||+||... ...+| .+||+.-.++..
T Consensus 3 ~~LP~gWe~~--~d~~g------~~Yy~n~~t~~t 29 (36)
T 1wr4_A 3 PGLPSGWEER--KDAKG------RTYYVNHNNRTT 29 (36)
T ss_dssp TTCCTTEEEE--ECSSS------CEEEEETTTTEE
T ss_pred CCCCCCCEEE--ECCCC------CEEEEECCCCCE
Confidence 4799999665 22343 358998866543
No 14
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=81.35 E-value=1.7 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.768 Sum_probs=18.9
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
...||+||....- .+| -+|||+-.++..
T Consensus 6 ~~~LP~gWe~~~~--~~G------~~Yy~n~~t~~t 33 (41)
T 1wr7_A 6 QSFLPPGWEMRIA--PNG------RPFFIDHNTKTT 33 (41)
T ss_dssp CCSSCTTEEEEEC--TTS------CEEEEETTTTEE
T ss_pred cCCCCCCcEEEEc--CCC------CEEEEECCCCCe
Confidence 4579999976632 333 479998866543
No 15
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=80.04 E-value=2.2 Score=26.52 Aligned_cols=27 Identities=30% Similarity=0.744 Sum_probs=17.8
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
..||+||.... -.+| -+||++-.++..
T Consensus 2 ~~LP~gW~~~~--~~~G------~~Yy~n~~t~~t 28 (37)
T 1e0m_A 2 MGLPPGWDEYK--THNG------KTYYYNHNTKTS 28 (37)
T ss_dssp CCSCTTEEEEE--CSSC------CEEEEETTTTEE
T ss_pred CCCCCCcEEEE--CCCC------CEEEEECCCCCe
Confidence 36999997653 2333 478988866654
No 16
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=78.82 E-value=2.4 Score=26.99 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=18.2
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
..||+||....- .+| .+||++-.++..
T Consensus 5 ~~LP~gWe~~~d--~~G------~~YY~n~~t~~t 31 (39)
T 2kyk_A 5 GPLPPGWERRVD--NMG------RIYYVDHFTRTT 31 (39)
T ss_dssp CCCCSSCEEEEC--TTS------CEEEECSSSCCE
T ss_pred CCCCCCcEEEEc--CCC------CEEEEECCCCCE
Confidence 479999976632 233 479998866543
No 17
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=77.86 E-value=2.5 Score=28.32 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=17.9
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+- .+| .+|||+-.++.
T Consensus 9 ~~~LP~gWe~~~~--~~G------~~Yyinh~t~~ 35 (46)
T 2l4j_A 9 SGPLPEGWEQAIT--PEG------EIYYINHKNKT 35 (46)
T ss_dssp TSCCCTTCEEEEC--TTS------CEEEEETTTTE
T ss_pred CCCCCcCceeEEC--CCC------CEEEEECCCCC
Confidence 3479999976632 333 47899876554
No 18
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=77.56 E-value=2.4 Score=27.85 Aligned_cols=26 Identities=35% Similarity=0.807 Sum_probs=17.4
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
..||+||.+..- .+| -+|||+-.++.
T Consensus 6 ~~LP~GWe~~~~--~~G------~~Yy~nh~t~~ 31 (42)
T 2djy_A 6 GPLPPGWEIRNT--ATG------RVYFVDHNNRT 31 (42)
T ss_dssp SCCCSSEEEEEC--SSS------CEEEEETTTTE
T ss_pred CCCCcCcEEEEC--CCC------CEEEEECCCCC
Confidence 469999977632 333 47999876543
No 19
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=76.98 E-value=2.5 Score=28.77 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=17.8
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+..- .+| -+|||+-.++.
T Consensus 9 ~~~LP~gWe~~~~--~~G------r~Yy~nh~t~~ 35 (50)
T 1i5h_W 9 LGPLPPGWEERTH--TDG------RVFFINHNIKK 35 (50)
T ss_dssp CSSCSTTEEEEEC--TTS------CEEEEETTTTE
T ss_pred CCCCCcCcEEEEc--CCC------CEEEEECCCCC
Confidence 4479999976632 333 47898876554
No 20
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=76.97 E-value=3.1 Score=28.84 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=17.9
Q ss_pred CCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 103 ~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
....||+||.+.+- .+| -+|||+-.+..
T Consensus 8 ~~~~LP~GWe~~~~--~~G------~~Yyinh~tk~ 35 (54)
T 1wmv_A 8 VAGDLPYGWEQETD--ENG------QVFFVDHINKR 35 (54)
T ss_dssp CSSCSCTTEEEEEC--TTS------CEEEEESSSCC
T ss_pred cCCCCCcCcEEEEC--CCC------CEEEEeCCCCC
Confidence 34479999976642 233 36888875443
No 21
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.65 E-value=3.9 Score=26.66 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=18.8
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
...||+||....- ..| -+||++-.++..
T Consensus 5 ~~~LP~GWe~~~d--~~G------r~YY~n~~t~~T 32 (43)
T 2dmv_A 5 SSGLPPGWEQRVD--QHG------RVYYVDHVEKRT 32 (43)
T ss_dssp CCSCCTTEEEEEC--TTS------CEEEEETTTCCE
T ss_pred CCCCCCCceEEEC--CCC------CEEEEECCCCCE
Confidence 4679999976632 233 478998866654
No 22
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=76.28 E-value=2.3 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.749 Sum_probs=17.3
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||....- .+| -+|||+-.++.
T Consensus 10 ~~~LP~gWe~~~~--~~G------~~Yy~nh~T~~ 36 (49)
T 2kpz_A 10 QGFLPKGWEVRHA--PNG------RPFFIDHNTKT 36 (49)
T ss_dssp --CCCTTEEEEEC--TTS------CEEEEETTTTE
T ss_pred CCCCCCCcEEEEC--CCC------CEEEEECCCCC
Confidence 4579999976632 333 47999876654
No 23
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=75.10 E-value=3.7 Score=27.38 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=17.8
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+- .+| -+|||+-.++.
T Consensus 8 ~~~LP~gWe~~~~--~~G------r~Yyinh~t~~ 34 (46)
T 2ez5_W 8 EEPLPPRWSMQVA--PNG------RTFFIDHASRR 34 (46)
T ss_dssp SCCCCTTEEEEEC--TTS------SEEEEETTTTE
T ss_pred CCCCCcCcEEEEc--CCC------CEEEEECCCCC
Confidence 4479999976632 333 47888875543
No 24
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=74.53 E-value=3.6 Score=28.46 Aligned_cols=27 Identities=37% Similarity=0.881 Sum_probs=17.8
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+- .+| -+|||+-.+..
T Consensus 16 ~~~LP~GWe~~~~--~~G------r~Yyinh~tk~ 42 (53)
T 2jmf_A 16 EGPLPPGWEIRYT--AAG------ERFFVDHNTRR 42 (53)
T ss_dssp CSCCCTTEEEEEC--TTS------CEEEEETTTCC
T ss_pred CCCCCcCcEEEEc--CCC------CEEEEeCCCCc
Confidence 3479999976632 333 46899875544
No 25
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=73.64 E-value=6 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCee------ecHHHHHHHHHhCC
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRF------RSKKEVLYFLETGT 154 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKF------RSK~EV~rYL~sg~ 154 (248)
..||+||.+.. .|. +...||+.+.+...- -+..||..|+....
T Consensus 6 ~~lp~~w~~~~-s~s------~~~~Yy~~~~~~~~~~~~~~~vs~~ei~~yy~~~~ 54 (177)
T 1yw5_A 6 TGLPPNWTIRV-SRS------HNKEYFLNQSTNESSWDPPYGTDKEVLNAYIAKFK 54 (177)
T ss_dssp CCCCTTEEEEE-CSS------TTCEEEEETTTCCEESSCCTTCCHHHHHHHHHHHH
T ss_pred CCCCchHHHHh-ccc------CCchhhhhHHHhhHhhcCcccCCHHHHHHHHHHhH
Confidence 45999997653 333 334789998653321 37899999998754
No 26
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=72.77 E-value=4.8 Score=27.32 Aligned_cols=27 Identities=33% Similarity=0.768 Sum_probs=17.8
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+. ..| .+|||+-.+..
T Consensus 9 ~~~LP~gWe~~~~--~~G------r~Yy~nh~t~~ 35 (49)
T 2ysb_A 9 DLPLPPGWSVDWT--MRG------RKYYIDHNTNT 35 (49)
T ss_dssp CCCCCTTEEEEEC--SSS------CEEEEETTTTE
T ss_pred CCCCCCCceEEEC--CCC------CEEEEEcCCCC
Confidence 4579999976642 233 47999875543
No 27
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=71.39 E-value=4.2 Score=27.71 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=18.0
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+..- .. |+ +||++-.+..
T Consensus 11 ~~~LP~GWe~~~d--~~----Gr--~YYvnh~t~~ 37 (49)
T 2zaj_A 11 ELELPAGWEKIED--PV----YG--IYYVDHINRK 37 (49)
T ss_dssp SSCCCTTEEEEEE--TT----TE--EEEEETTTTE
T ss_pred CCCCCcCceEEEc--CC----CC--EEEEeCCCCC
Confidence 4579999976632 23 34 7999886554
No 28
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=69.77 E-value=5 Score=26.21 Aligned_cols=27 Identities=44% Similarity=0.963 Sum_probs=17.7
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
...||+||.+.. =.+ | .||+.-.++..
T Consensus 6 ~~~LP~GWe~~~--~~~----G---~YY~n~~t~~t 32 (39)
T 2ysc_A 6 SGGLPPGWRKIH--DAA----G---TYYWHVPSGST 32 (39)
T ss_dssp CCCCCTTEEEEE--ETT----E---EEEEESSSCCE
T ss_pred CCCCCCCcEEEE--cCC----C---CEEEEcCCCCE
Confidence 357999996552 112 4 49998877654
No 29
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=68.10 E-value=5.2 Score=29.67 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=17.7
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+ -.+| -+|||+..++.
T Consensus 7 ~~~LP~gWe~~~--~~~G------r~YY~n~~t~~ 33 (90)
T 2kxq_A 7 PPDLPEGYEQRT--TQQG------QVYFLHTQTGV 33 (90)
T ss_dssp CCSCCSSCEEEE--ETTT------EEEEEETTTTE
T ss_pred CCCCCCCcEEEE--CCCC------CEEEEECCCCe
Confidence 347999996553 2343 36999886554
No 30
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=67.80 E-value=5.5 Score=25.91 Aligned_cols=25 Identities=36% Similarity=0.881 Sum_probs=16.4
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
..||+||.+..- . .| +||++-.++.
T Consensus 2 ~~LP~GWe~~~d----~--~g---~YY~n~~t~~ 26 (38)
T 2ho2_A 2 SDLPAGWMRVQD----T--SG---TYYWHIPTGT 26 (38)
T ss_dssp CCSCTTEEEEEC----S--SC---EEEEETTTTE
T ss_pred CcCCCCceEEEe----C--CC---CEEEecCCCC
Confidence 369999965531 1 14 8999876654
No 31
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.57 E-value=5 Score=28.60 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeee
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFR 141 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFR 141 (248)
...||+||.+..- .. |+ +||++-.+...=-
T Consensus 11 ~~~LP~GWE~~~d--~~----Gr--~YYvnh~tk~T~W 40 (60)
T 2yse_A 11 ELELPAGWEKIED--PV----YG--IYYVDHINRKTQY 40 (60)
T ss_dssp CSSCCSSEEEEEC--SS----SC--EEEEETTTTEEES
T ss_pred CCCCCCCcEEEEC--CC----CC--EEEEeCCCCCeec
Confidence 4579999966532 22 33 7899887665433
No 32
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=63.68 E-value=6.4 Score=28.17 Aligned_cols=28 Identities=39% Similarity=0.872 Sum_probs=18.5
Q ss_pred CCCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 103 TEAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 103 ~~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
....||+||.+..-. + | .||++-.+|..
T Consensus 16 ~~~~LPpGW~~~~D~--s----G---tYY~h~~T~tT 43 (55)
T 2e45_A 16 TDSDLPAGWMRVQDT--S----G---TYYWHIPTGTT 43 (55)
T ss_dssp SCSCCCTTEEEEEET--T----E---EEEEETTTCCE
T ss_pred CCCCCCCCCeEeecC--C----C---CEEEEcCCCCC
Confidence 455799999654211 2 4 78888777764
No 33
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.59 E-value=7.3 Score=26.42 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=17.5
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
..||+||.+..- .. |+ +||++-.++.
T Consensus 12 ~~LP~GWe~~~d--~~----g~--~YYvnh~t~~ 37 (49)
T 2dwv_A 12 EGLPPGWERVES--SE----FG--TYYVDHTNKR 37 (49)
T ss_dssp SCCCTTEEEEEE--TT----TE--EEEEETTTTE
T ss_pred CCCCcCcEEEEC--CC----CC--EEEEECCCCC
Confidence 579999966632 22 33 7899876544
No 34
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=60.25 E-value=10 Score=26.49 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=17.7
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.+.+- ..| -+|||+-.+..
T Consensus 12 ~~~LP~GWe~~~~--~~G------r~Yyinh~tk~ 38 (57)
T 2ysd_A 12 LGPLPENWEMAYT--ENG------EVYFIDHNTKT 38 (57)
T ss_dssp CCSCCSSEEEEEC--SSC------CEEEEETTTTE
T ss_pred CCCCCcCcEEEEC--CCC------CEEEEECCCCc
Confidence 3469999976632 233 47999875443
No 35
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=55.36 E-value=9.8 Score=28.04 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=18.1
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
...||+||.+.+. ..| -+|||.-.++..
T Consensus 10 ~~~LP~gWe~~~~--~~G------r~Yy~n~~t~~t 37 (88)
T 1tk7_A 10 LGPLPDGWEKKIQ--SDN------RVYFVNHKNRTT 37 (88)
T ss_dssp TSSSSSSCCEEEE--TTT------EEEEEETTTTEE
T ss_pred cCCCCCCcEEEEC--CCC------CEEEEECCCCCe
Confidence 3469999966632 333 378998765543
No 36
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=47.55 E-value=5.7 Score=27.31 Aligned_cols=29 Identities=28% Similarity=0.506 Sum_probs=19.2
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
...||+||+... -+..| -.||+...||..
T Consensus 8 ~~~LP~gW~~~~-~~~~g------r~YY~N~~T~~S 36 (52)
T 2jx8_A 8 EELVHAGWEKCW-SRREN------RPYYFNRFTNQS 36 (52)
T ss_dssp HHHHHHTCCEEE-ETTTT------EEEEEETTTTEE
T ss_pred cCCCCcCcEEEE-ccccC------CEEEEECCCCCE
Confidence 357999997653 23333 479999877754
No 37
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=42.32 E-value=21 Score=29.13 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=15.4
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGR 138 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGk 138 (248)
...||+||.... -+. ..-+||++..++.
T Consensus 7 ~~~LP~gWe~~~-~~~------~g~~yy~n~~t~~ 34 (166)
T 3tc5_A 7 EEKLPPGWEKAM-SRS------SGRVYYFNHITNA 34 (166)
T ss_dssp ---CCTTEEEEE-CTT------TCCEEEEETTTCC
T ss_pred CCCCCCCceEEE-cCC------CCCEEEEECCCCC
Confidence 357999995432 112 2347999875554
No 38
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=36.32 E-value=39 Score=27.09 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=33.9
Q ss_pred ceEEEEEccCCCCCCceeEEEeeCCCCCeeecHHHHHHHHHhCCcccccc
Q 045019 111 WEIEDRVRTSGATAGTVDKYYFHVASGRRFRSKKEVLYFLETGTKRKRRK 160 (248)
Q Consensus 111 W~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK~EV~rYL~sg~~~~~~~ 160 (248)
=++..++|+.+ | .|||++.....|-|+.||..|-.+.-.--|..
T Consensus 63 ~VKHYkI~~~~---G---~y~I~~~~~~~F~SL~eLV~yY~~~adGl~~~ 106 (125)
T 3maz_A 63 RIKHYKVMSVG---Q---NYTIELEKPVTLPNLFSVIDYFVKETRGNLRP 106 (125)
T ss_dssp EEEEEEEEEET---T---EEEECSSSCEEESSHHHHHHHHHHHTTTCCCB
T ss_pred CEeeeEEEEeC---C---EEEEecCCCcCcCCHHHHHHHHHhCCCcCccc
Confidence 37888888763 3 59999855678999999998888766666655
No 39
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=36.30 E-value=18 Score=23.55 Aligned_cols=26 Identities=31% Similarity=0.736 Sum_probs=15.2
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASG 137 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sG 137 (248)
...||.||.... -.+ |+ .||++-.+.
T Consensus 6 ~~~LP~GWe~~~--~~~----gr--~y~~n~~t~ 31 (46)
T 1jmq_A 6 DVPLPAGWEMAK--TSS----GQ--RYFKNHIDQ 31 (46)
T ss_dssp SCCCCTTBCCBC--CSS----CC--CBEEETTTT
T ss_pred CCCCCcCcEEEE--cCC----Cc--eEEEEecCC
Confidence 447999996542 122 33 467776444
No 40
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=35.44 E-value=38 Score=26.86 Aligned_cols=25 Identities=32% Similarity=0.706 Sum_probs=16.3
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCC
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVAS 136 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~s 136 (248)
...||+||...+ =.+| -+||++-.+
T Consensus 70 ~~pLP~GWE~r~--d~~G------r~YfIdH~t 94 (109)
T 3l4h_A 70 RLELPRGWEIKT--DQQG------KSFFVDHNS 94 (109)
T ss_dssp TSCCCTTEEEEE--CTTC------CEEEEETTT
T ss_pred CCCCCCCCeEEE--CCCC------CEEEEeCCC
Confidence 457999995543 2233 479998743
No 41
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=35.19 E-value=22 Score=22.12 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=16.5
Q ss_pred CCCCeeecHHHHHHHHHhC
Q 045019 135 ASGRRFRSKKEVLYFLETG 153 (248)
Q Consensus 135 ~sGkKFRSK~EV~rYL~sg 153 (248)
-.|+.||..+|+..|++.-
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 3699999999999999864
No 42
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=33.69 E-value=29 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=20.6
Q ss_pred CCCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCeeecH
Q 045019 104 EAWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRRFRSK 143 (248)
Q Consensus 104 ~~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkKFRSK 143 (248)
...||.||....- .+| + +||+...|+..---+
T Consensus 9 ~~~lp~~W~e~~~--~~G----r--~YYyN~~T~~s~We~ 40 (92)
T 2l5f_A 9 ASGAKSMWTEHKS--PDG----R--TYYYNTETKQSTWEK 40 (92)
T ss_dssp TTBTTTTEEEEEC--TTS----C--EEEEETTTTEEESSC
T ss_pred CCCCCCCcEEEEc--CCC----C--EEEEECCCCceeccc
Confidence 4569999975531 233 3 699988887754333
No 43
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.86 E-value=45 Score=17.05 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.4
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|+++..|.+.+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 4 FSCSLCPQRSRDFSAMTKHLR 24 (27)
T ss_dssp EECSSSSCEESSHHHHHHHHH
T ss_pred ccCCCcChhhCCHHHHHHHHH
Confidence 566779999999999988764
No 44
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.07 E-value=43 Score=17.15 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|.++..|.+.+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHH
Confidence 556779999999999988764
No 45
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=31.21 E-value=19 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.546 Sum_probs=16.9
Q ss_pred CCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 106 WLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 106 ~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
.||.||... .-.+ |+ +|||+..++..
T Consensus 40 ~lp~gW~~~--~~~~----Gr--~Yy~n~~t~~t 65 (75)
T 1o6w_A 40 LRENGWKAA--KTAD----GK--VYYYNPTTRET 65 (75)
T ss_dssp HHHHTCEEE--ECTT----CC--EEEEETTTTEE
T ss_pred CCCCeEEEE--ECCC----CC--EEEEECCCCCE
Confidence 489999554 2233 33 79999876654
No 46
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.92 E-value=59 Score=16.44 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=18.4
Q ss_pred EeeCCCCCeeecHHHHHHHHHh
Q 045019 131 YFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~s 152 (248)
|..+..|+.|.++..|.+.+..
T Consensus 4 ~~C~~C~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTSKMRHLET 25 (30)
T ss_dssp EECTTTCCEESCHHHHHHHHHT
T ss_pred ccCCCCCcccCCHHHHHHHHHH
Confidence 5667799999999999988754
No 47
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.29 E-value=55 Score=17.58 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.8
Q ss_pred EeeCCCCCeeecHHHHHHHHHh
Q 045019 131 YFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~s 152 (248)
|..+.+|+.|.++..|.+.+..
T Consensus 8 ~~C~~C~k~f~~~~~L~~H~~~ 29 (35)
T 2elx_A 8 YVCALCLKKFVSSIRLRSHIRE 29 (35)
T ss_dssp EECSSSCCEESSHHHHHHHHHH
T ss_pred eECCCCcchhCCHHHHHHHHHH
Confidence 6677899999999999988754
No 48
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.30 E-value=51 Score=18.11 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.0
Q ss_pred ceeEEEeeCCCCCeeecHHHHHHHHH
Q 045019 126 TVDKYYFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 126 k~DvYYisP~sGkKFRSK~EV~rYL~ 151 (248)
...+-|..+.+|+.|..+..|.+.+.
T Consensus 5 ~~~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2els_A 5 SSGKIFTCEYCNKVFKFKHSLQAHLR 30 (36)
T ss_dssp SCCCCEECTTTCCEESSHHHHHHHHH
T ss_pred CCCCCEECCCCCceeCCHHHHHHHHH
Confidence 34455778889999999999988765
No 49
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.22 E-value=34 Score=17.34 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.6
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|.++..|.+.+.
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 445668999999999988764
No 50
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=26.91 E-value=62 Score=17.53 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=18.5
Q ss_pred EeeCCCCCeeecHHHHHHHHHh
Q 045019 131 YFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~s 152 (248)
|..+.+|+.|+++..|.+.+..
T Consensus 8 ~~C~~C~k~f~~~~~l~~H~~~ 29 (35)
T 1srk_A 8 FVCRICLSAFTTKANCARHLKV 29 (35)
T ss_dssp EECSSSCCEESSHHHHHHHHGG
T ss_pred eeCCCCCcccCCHHHHHHHHHH
Confidence 6667799999999999988753
No 51
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.67 E-value=58 Score=16.84 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=17.4
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|..+..|.+.+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMR 24 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHT
T ss_pred cCCCCCCcccCCHHHHHHHHH
Confidence 566789999999999988764
No 52
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.52 E-value=44 Score=17.01 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=17.7
Q ss_pred EeeCCCCCeeecHHHHHHHHHh
Q 045019 131 YFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~s 152 (248)
|..+..|+.|.++..|.+.+..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~ 24 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYRS 24 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHHH
Confidence 4556789999999999987653
No 53
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=26.00 E-value=61 Score=19.42 Aligned_cols=22 Identities=27% Similarity=0.838 Sum_probs=14.9
Q ss_pred CCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 109 PGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 109 ~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
+||. .-+.+|. .||+...|+..
T Consensus 1 ~gWe---~~~~~g~------~YYyN~~T~~s 22 (27)
T 1e0n_A 1 PGWE---IIHENGR------PLYYNAEQKTK 22 (27)
T ss_dssp CCEE---EEESSSS------EEEEETTTTEE
T ss_pred CCCe---EECCCCC------eEEEECCCCCE
Confidence 5887 3555553 68999877754
No 54
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.92 E-value=65 Score=17.46 Aligned_cols=24 Identities=17% Similarity=0.002 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCeeecHHHHHHHHH
Q 045019 128 DKYYFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 128 DvYYisP~sGkKFRSK~EV~rYL~ 151 (248)
.+-|..+.+|+.|..+..|.+.+.
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLR 30 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHHHHH
Confidence 345777889999999999998875
No 55
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.49 E-value=67 Score=17.58 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCeeecHHHHHHHHHh
Q 045019 128 DKYYFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 128 DvYYisP~sGkKFRSK~EV~rYL~s 152 (248)
.+-|..+.+|+.|.++..|.+.+..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKAHMNR 31 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHHHHHH
T ss_pred CCCccCCCCCchhCCHHHHHHHHHH
Confidence 3447778899999999999988754
No 56
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.44 E-value=73 Score=15.99 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.2
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|.++..+.+.+.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2m0f_A 3 LKCRECGKQFTTSGNLKRHLR 23 (29)
T ss_dssp EECTTTSCEESCHHHHHHHHH
T ss_pred ccCCCCCCccCChhHHHHHHH
Confidence 556779999999999988764
No 57
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=25.19 E-value=72 Score=16.11 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=14.9
Q ss_pred CCCCeeecHHHHHHHHH
Q 045019 135 ASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 135 ~sGkKFRSK~EV~rYL~ 151 (248)
..|+.|.++..|.+.+.
T Consensus 9 ~C~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 9 NCGRSFNDRRKLNRHKK 25 (29)
T ss_dssp TTCEEESSHHHHHHHHG
T ss_pred cCcCccCCHHHHHHHHH
Confidence 79999999999988764
No 58
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.27 E-value=49 Score=18.03 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.1
Q ss_pred EEEeeCCCCCeeecHHHHHHHHH
Q 045019 129 KYYFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 129 vYYisP~sGkKFRSK~EV~rYL~ 151 (248)
+-|..+.+|+.|.++..|.+.+.
T Consensus 8 ~~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTLKSHKL 30 (36)
T ss_dssp SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred CCeecCcCCCCcCchHHHHHHHH
Confidence 34677889999999999988865
No 59
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=24.03 E-value=1e+02 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=18.2
Q ss_pred CCCCCCceEEEEEccCCCCCCceeEEEeeCCCCCe
Q 045019 105 AWLPPGWEIEDRVRTSGATAGTVDKYYFHVASGRR 139 (248)
Q Consensus 105 ~~LP~GW~rEv~~RksG~SaGk~DvYYisP~sGkK 139 (248)
..+|.+|..- ....| ..||+...|+..
T Consensus 6 ~~~~~~W~e~--~~~~G------~~YYyN~~T~eS 32 (40)
T 2ysi_A 6 SGTEEIWVEN--KTPDG------KVYYYNARTRES 32 (40)
T ss_dssp CCCCCSEEEE--ECTTS------CEEEEETTTCCE
T ss_pred CCCCCCCEEE--ECCCC------CEEEEECCCCCE
Confidence 4678999753 34443 479999877653
No 60
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.71 E-value=52 Score=16.77 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=17.3
Q ss_pred EeeCCCCCeeecHHHHHHHHH
Q 045019 131 YFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 131 YisP~sGkKFRSK~EV~rYL~ 151 (248)
|..+..|+.|.++..|.+.+.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHT
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 556779999999999988765
No 61
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.43 E-value=61 Score=17.79 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=18.5
Q ss_pred EEeeCCCCCeeecHHHHHHHHH
Q 045019 130 YYFHVASGRRFRSKKEVLYFLE 151 (248)
Q Consensus 130 YYisP~sGkKFRSK~EV~rYL~ 151 (248)
-|..+.+|+.|.++..|.+.+.
T Consensus 11 ~~~C~~C~k~f~~~~~l~~H~~ 32 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDHLALHRK 32 (37)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHG
T ss_pred CccCCCCCcccCcHHHHHHHHH
Confidence 3677889999999999988764
No 62
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.58 E-value=87 Score=17.07 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCeeecHHHHHHHHHh
Q 045019 128 DKYYFHVASGRRFRSKKEVLYFLET 152 (248)
Q Consensus 128 DvYYisP~sGkKFRSK~EV~rYL~s 152 (248)
++-|..+.+|+.|..+..|.+.+..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~~ 31 (36)
T 2elv_A 7 GLLYDCHICERKFKNELDRDRHMLV 31 (36)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred CCCeECCCCCCccCCHHHHHHHHHH
Confidence 3457778899999999999988753
Done!