BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045020
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J0H|A Chain A, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|B Chain B, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|C Chain C, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|D Chain D, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|E Chain E, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|F Chain F, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0I|A Chain A, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|B Chain B, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|C Chain C, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|D Chain D, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|E Chain E, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|F Chain F, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
Length = 295
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 73 KIGNCLVKRILIDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNS 125
K+G+ R+ + + D+A + K + Q +I+L E+P +G S ++ +
Sbjct: 104 KLGDSNGMRVWSTTTADIEEFDEAAMAKFKTRQFRIQLIEKPEVGTSPVIVKT 156
>pdb|3SPE|A Chain A, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
pdb|3SPE|B Chain B, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
Length = 295
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 73 KIGNCLVKRILIDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIV 122
K+G+ R+ + + D+A K + Q +I+L E+P +G S ++
Sbjct: 104 KLGDSNGXRVWSTTTADIEEFDEAAXAKFKTRQFRIQLIEKPEVGTSPVI 153
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 81 RILIDNGSSVNILDDATVEKMRL 103
RIL+ NG+ VN +DDA V + L
Sbjct: 31 RILMANGADVNAMDDAGVTPLHL 53
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 81 RILIDNGSSVNILDDATVEKMRL 103
RIL+ NG+ VN +DDA V + L
Sbjct: 31 RILMANGADVNAMDDAGVTPLHL 53
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 81 RILIDNGSSVNILDDATVEKMRL 103
RIL+ NG+ VN +DDA V + L
Sbjct: 31 RILMANGADVNAMDDAGVTPLHL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,028,855
Number of Sequences: 62578
Number of extensions: 226406
Number of successful extensions: 506
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 5
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)