BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045020
         (221 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7N8V4|LPTD_PHOLL LPS-assembly protein LptD OS=Photorhabdus luminescens subsp.
           laumondii (strain TT01) GN=lptD PE=3 SV=1
          Length = 774

 Score = 36.6 bits (83), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 33/75 (44%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I D++ VE+  L   +I  FE+P  G   I+ + D    +     +Y  + D
Sbjct: 555 VTTGLTTRIYDESLVERFNLSLGQIYYFERPRTGKETIINSKDSTGMMTWAGDTYWKIND 614

Query: 144 FLVVKATSPYNVILG 158
              +K    Y+  LG
Sbjct: 615 SWGLKGGMQYDTRLG 629


>sp|A1JJF7|LPTD_YERE8 LPS-assembly protein LptD OS=Yersinia enterocolitica serotype O:8 /
           biotype 1B (strain 8081) GN=lptD PE=3 SV=1
          Length = 788

 Score = 33.5 bits (75), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I DD  VE+  +   +I  F +   G S  + NSD   +L+    ++  + D
Sbjct: 565 VSTGLTSRIYDDELVERFNVSVGQIYYFSRSRTGNSETIDNSDDTGSLVWAGDTFWRIND 624

Query: 144 FLVVKATSPYNVILG 158
            L +K  + Y+  LG
Sbjct: 625 QLGLKGGAQYDTRLG 639


>sp|Q1CMS9|LPTD_YERPN LPS-assembly protein LptD OS=Yersinia pestis bv. Antiqua (strain
           Nepal516) GN=lptD PE=3 SV=2
          Length = 780

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I DDA VE+  +   +I  F +   G +  + NS+   +L+    ++  + D
Sbjct: 557 VSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTGNTEAIDNSNATGSLVWAGDTFWRIND 616

Query: 144 FLVVKATSPYNVILG 158
            L +K  + Y+  LG
Sbjct: 617 QLGLKGGAQYDTRLG 631


>sp|Q8ZIK3|LPTD_YERPE LPS-assembly protein LptD OS=Yersinia pestis GN=lptD PE=3 SV=1
          Length = 780

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I DDA VE+  +   +I  F +   G +  + NS+   +L+    ++  + D
Sbjct: 557 VSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTGNTEAIDNSNATGSLVWAGDTFWRIND 616

Query: 144 FLVVKATSPYNVILG 158
            L +K  + Y+  LG
Sbjct: 617 QLGLKGGAQYDTRLG 631


>sp|Q1C0H2|LPTD_YERPA LPS-assembly protein LptD OS=Yersinia pestis bv. Antiqua (strain
           Antiqua) GN=lptD PE=3 SV=2
          Length = 780

 Score = 32.7 bits (73), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I DDA VE+  +   +I  F +   G +  + NS+   +L+    ++  + D
Sbjct: 557 VSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTGNTEAIDNSNATGSLVWAGDTFWRIND 616

Query: 144 FLVVKATSPYNVILG 158
            L +K  + Y+  LG
Sbjct: 617 QLGLKGGAQYDTRLG 631


>sp|Q66EQ6|LPTD_YERPS LPS-assembly protein LptD OS=Yersinia pseudotuberculosis serotype I
           (strain IP32953) GN=lptD PE=3 SV=1
          Length = 780

 Score = 32.3 bits (72), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 84  IDNGSSVNILDDATVEKMRLEQDKIKLFEQPLIGLSGIVTNSDGVITLLVIAKSYSLLTD 143
           +  G +  I DDA VE+  +   +I  F +   G +  + NS+   +L+    ++  + D
Sbjct: 557 VSTGLTSRIYDDARVERFNVSVGQIYYFSRSRTGNTEAIDNSNDTGSLVWAGDTFWRIND 616

Query: 144 FLVVKATSPYNVILG 158
            L +K  + Y+  LG
Sbjct: 617 QLGLKGGAQYDTRLG 631


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,654,706
Number of Sequences: 539616
Number of extensions: 2964853
Number of successful extensions: 7621
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7604
Number of HSP's gapped (non-prelim): 30
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)