BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045021
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 44/223 (19%)
Query: 39 CKGLVKLPQXXXXXXXXREIEICRCHSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWM 97
GL +LP + + R + L + P +A ++L+++ IR C L LPE +
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-L 170
Query: 98 CGTNSSLEILKIWSCHSL--PYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYT 155
T++S E + + SL + LP S I++ N+++L + + S+
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-----IANLQNLKSLKIRNSPLSALGPAI 225
Query: 156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDN 215
+L P L+ L++ C+ L +
Sbjct: 226 HHL----------------------------------PKLEELDLRGCTALRNYPPIFGG 251
Query: 216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP 258
L+ + + C NL LP +H L QL+++ L GC NL P
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 230 LKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK 289
L+ LP+ + +L +L+E+ + C L PE P A G + +GL NL+
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPE---PLASTDASGEH---------QGLVNLQ 186
Query: 290 SLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIER---GFHKFSSLRHLTIEGC 346
SL+ G + LP ++ L+ ++++I S + H L L + GC
Sbjct: 187 SLRLEWTGIR-------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKL 405
+ ++PP G P L L + D NL L I L L+ L L C L
Sbjct: 240 -TALRNYPPI---FGGRAP----LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 179 LPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH 238
LPA++ +L+ +LKSL + + S L ++ + + LE + + C L+ P
Sbjct: 198 LPASIANLQ------NLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 239 NLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP 282
L+ + L C NL++ P +L KL + C L LP
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 41/175 (23%)
Query: 60 ICRCHSLVSFPEVALPSKLKK--IEIRECDALKSLPE--AWMCGTNSSLEILKIWSCHSL 115
+ C+SL PE LP LK ++ AL LP ++ +N+ LE L S
Sbjct: 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154
Query: 116 PYIARV---------QLPPSLKRL--------DISHCDNIRTLTVEDGIQSSSRRYT--- 155
I V LPPSL+ + ++ N+ LT +S ++
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 214
Query: 156 ---------SYLLEKL-EIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNV 200
+ +LE+L E+ + P LT I++ N L TL L PPSL++LNV
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNV 264
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 242 QLQEIQLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALPKGLH-NLKSLKKLRIGG 298
L+E++L EN+VS E G L LG+ R RL+ +P G+ L +L KL I
Sbjct: 57 HLEELEL--NENIVSAVEPGAFNNLFNLRTLGL-RSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 299 KLPSLEEDGLPTNLHFLK---IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP 355
+ D + +L+ LK + N ++ S R F +SL LT+E C ++ S P
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKC--NLTSIPT 169
Query: 356 E 356
E
Sbjct: 170 E 170
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 190 NQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQL 248
N+ PSL+ L++ +LE I+E + +L +++ C NLK +P+ L L +L+E++L
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN-LTALVRLEELEL 185
Query: 249 WGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG-GKLPSLEEDG 307
G + P L KL + + +LKSL++L + L SL D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD- 244
Query: 308 LPTNLHFL-KIERNMEIW 324
L T LH L ++ N W
Sbjct: 245 LFTPLHRLERVHLNHNPW 262
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 190 NQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQL 248
N+ PSL+ L++ +LE I+E + +L +++ C NLK +P+ L L +L+E++L
Sbjct: 128 NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN-LTALVRLEELEL 185
Query: 249 WGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG-GKLPSLEEDG 307
G + P L KL + + +LKSL++L + L SL D
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD- 244
Query: 308 LPTNLHFL-KIERNMEIW 324
L T LH L ++ N W
Sbjct: 245 LFTPLHRLERVHLNHNPW 262
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 193 PSLKSLNVWSCSKLESIAERLDNNTS----LEMISILWCENLKFLPSGLHNLRQLQEIQL 248
PS+ + N+ SKL +R+++ + L+++ + + NL F P ++NL++ +
Sbjct: 10 PSVLASNI---SKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 66
Query: 249 WGCENLVSFPEGGLPCAKLSKLGIYRCERLE 279
+ +V +PE +P K S + E L
Sbjct: 67 FDVHLMVEYPEKYVPLLKTSNQLTFHFEALN 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,490,824
Number of Sequences: 62578
Number of extensions: 551682
Number of successful extensions: 1155
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 22
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)