Query 045021
Match_columns 461
No_of_seqs 192 out of 2556
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.9E-28 1.1E-32 262.1 19.8 264 19-298 158-437 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.4E-28 2E-32 259.9 20.8 315 4-346 115-462 (968)
3 PLN03210 Resistant to P. syrin 99.9 9.2E-25 2E-29 237.2 22.5 344 19-410 552-911 (1153)
4 KOG4194 Membrane glycoprotein 99.9 1.9E-25 4.2E-30 209.6 3.8 360 28-423 77-447 (873)
5 KOG4194 Membrane glycoprotein 99.9 2.3E-24 5E-29 202.4 5.0 361 53-460 78-455 (873)
6 PLN03210 Resistant to P. syrin 99.9 2.8E-22 6.1E-27 217.9 21.5 284 29-346 611-903 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 2.4E-23 5.1E-28 197.1 -6.6 344 17-428 24-375 (1255)
8 KOG0618 Serine/threonine phosp 99.8 4E-22 8.6E-27 196.8 -1.9 365 17-422 60-459 (1081)
9 KOG0444 Cytoskeletal regulator 99.8 4.9E-22 1.1E-26 188.3 -7.8 320 20-385 50-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 4.2E-22 9.1E-27 179.5 -12.0 353 29-424 68-514 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 6.6E-21 1.4E-25 171.8 -13.3 358 20-427 109-540 (565)
12 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 172.9 -5.0 356 20-427 86-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 5.5E-14 1.2E-18 143.3 15.0 256 78-407 203-459 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3.1E-18 140.3 14.3 116 29-172 201-316 (788)
15 PRK15370 E3 ubiquitin-protein 99.4 4.6E-13 1E-17 137.4 10.2 76 336-426 346-426 (754)
16 KOG4237 Extracellular matrix p 99.4 2.3E-15 5E-20 136.1 -6.0 86 212-298 269-355 (498)
17 KOG4341 F-box protein containi 99.4 5.9E-15 1.3E-19 134.5 -5.5 151 195-346 270-436 (483)
18 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.9E-17 134.0 10.5 246 102-406 178-428 (754)
19 KOG4341 F-box protein containi 99.3 1.8E-14 3.9E-19 131.4 -6.1 293 76-410 138-444 (483)
20 KOG4237 Extracellular matrix p 99.1 1.8E-12 3.8E-17 117.7 -4.5 292 87-426 56-357 (498)
21 KOG0617 Ras suppressor protein 99.1 2.6E-12 5.7E-17 103.4 -5.0 161 214-410 30-190 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.0 1.5E-10 3.2E-15 121.0 4.3 82 54-138 546-631 (889)
23 KOG0617 Ras suppressor protein 99.0 1.1E-11 2.3E-16 100.0 -4.2 156 193-356 33-191 (264)
24 cd00116 LRR_RI Leucine-rich re 99.0 8.1E-11 1.8E-15 111.5 -0.1 88 211-298 75-174 (319)
25 cd00116 LRR_RI Leucine-rich re 98.9 1.6E-10 3.4E-15 109.5 -1.1 254 194-455 24-318 (319)
26 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.3E-14 114.7 4.3 81 29-112 571-652 (889)
27 KOG3207 Beta-tubulin folding c 98.7 9.9E-10 2.1E-14 101.4 -1.2 188 213-406 142-339 (505)
28 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.5E-13 85.9 3.1 58 367-426 63-124 (175)
29 KOG2120 SCF ubiquitin ligase, 98.7 1.1E-10 2.4E-15 102.4 -9.5 181 54-252 186-374 (419)
30 KOG3207 Beta-tubulin folding c 98.6 7.7E-09 1.7E-13 95.6 0.5 175 238-426 118-312 (505)
31 KOG0532 Leucine-rich repeat (L 98.6 1.8E-09 4E-14 102.8 -3.6 189 196-425 78-270 (722)
32 PF14580 LRR_9: Leucine-rich r 98.5 5.3E-08 1.1E-12 81.9 2.7 54 266-321 20-75 (175)
33 KOG1259 Nischarin, modulator o 98.5 3.1E-08 6.7E-13 87.4 0.8 131 264-410 283-416 (490)
34 KOG1259 Nischarin, modulator o 98.5 3.3E-08 7.2E-13 87.2 0.4 125 286-426 281-410 (490)
35 KOG2120 SCF ubiquitin ligase, 98.4 4.1E-09 8.9E-14 92.7 -6.1 194 194-396 186-391 (419)
36 PRK15386 type III secretion pr 98.4 6.8E-07 1.5E-11 84.5 8.0 134 29-203 52-187 (426)
37 PRK15386 type III secretion pr 98.4 1.3E-06 2.9E-11 82.5 9.8 136 214-377 49-186 (426)
38 COG4886 Leucine-rich repeat (L 98.3 5.7E-07 1.2E-11 87.8 4.4 178 213-408 112-292 (394)
39 PF13855 LRR_8: Leucine rich r 98.1 5.8E-06 1.3E-10 56.8 4.9 57 29-87 1-60 (61)
40 COG4886 Leucine-rich repeat (L 98.1 4.3E-06 9.2E-11 81.7 5.4 87 72-172 112-200 (394)
41 KOG1947 Leucine rich repeat pr 98.0 2.2E-07 4.8E-12 93.3 -4.4 137 29-171 161-309 (482)
42 PF13855 LRR_8: Leucine rich r 98.0 9.4E-06 2E-10 55.8 4.8 57 336-401 1-58 (61)
43 KOG1909 Ran GTPase-activating 98.0 8.7E-07 1.9E-11 80.1 -1.3 110 310-426 185-309 (382)
44 KOG1947 Leucine rich repeat pr 98.0 6.2E-07 1.3E-11 90.1 -3.1 104 311-432 336-444 (482)
45 KOG3665 ZYG-1-like serine/thre 98.0 2.1E-06 4.6E-11 88.0 0.6 160 241-406 122-289 (699)
46 KOG1909 Ran GTPase-activating 97.9 1.3E-06 2.9E-11 79.0 -2.3 144 307-457 154-311 (382)
47 KOG0531 Protein phosphatase 1, 97.8 2.9E-06 6.3E-11 83.2 -0.8 176 212-408 90-270 (414)
48 KOG2982 Uncharacterized conser 97.8 2.1E-05 4.6E-10 69.8 3.9 182 214-403 68-260 (418)
49 PF12799 LRR_4: Leucine Rich r 97.7 5.9E-05 1.3E-09 47.5 3.9 41 29-71 1-41 (44)
50 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.5E-10 82.7 0.8 127 216-345 147-284 (699)
51 KOG0532 Leucine-rich repeat (L 97.6 2.7E-06 5.8E-11 81.8 -5.0 99 195-298 145-243 (722)
52 PF12799 LRR_4: Leucine Rich r 97.5 0.00014 3E-09 45.9 3.8 41 368-410 1-41 (44)
53 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.3E-10 78.1 -1.2 192 215-425 70-265 (414)
54 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.9E-09 59.9 5.6 104 309-426 41-151 (233)
55 KOG1859 Leucine-rich repeat pr 97.5 1.4E-06 3E-11 86.0 -8.8 122 290-427 165-291 (1096)
56 PLN03150 hypothetical protein; 97.4 0.00033 7.1E-09 72.2 7.5 107 218-324 419-529 (623)
57 PLN03150 hypothetical protein; 97.4 0.0003 6.4E-09 72.5 6.5 86 55-142 420-507 (623)
58 KOG1859 Leucine-rich repeat pr 97.3 3.6E-06 7.9E-11 83.2 -7.8 203 19-252 74-290 (1096)
59 KOG2982 Uncharacterized conser 97.2 8.2E-05 1.8E-09 66.2 -0.3 130 262-402 68-209 (418)
60 KOG1644 U2-associated snRNP A' 97.0 0.0021 4.5E-08 54.3 6.3 78 54-135 43-123 (233)
61 COG5238 RNA1 Ran GTPase-activa 96.5 0.00018 4E-09 63.2 -3.1 85 262-346 89-195 (388)
62 KOG2739 Leucine-rich acidic nu 96.3 0.0019 4.2E-08 56.7 1.7 110 286-404 40-155 (260)
63 KOG4579 Leucine-rich repeat (L 96.2 0.0013 2.8E-08 51.9 0.2 89 312-410 29-117 (177)
64 KOG2123 Uncharacterized conser 96.1 0.00054 1.2E-08 60.6 -2.7 98 311-423 20-125 (388)
65 KOG3864 Uncharacterized conser 95.8 0.0024 5.1E-08 54.0 0.1 89 311-407 102-191 (221)
66 KOG4579 Leucine-rich repeat (L 95.3 0.0013 2.8E-08 52.0 -3.2 58 51-112 51-110 (177)
67 KOG2123 Uncharacterized conser 95.2 0.00065 1.4E-08 60.1 -5.5 78 266-346 20-98 (388)
68 KOG2739 Leucine-rich acidic nu 94.8 0.017 3.7E-07 50.9 2.1 86 49-136 39-127 (260)
69 KOG3864 Uncharacterized conser 94.0 0.0075 1.6E-07 51.0 -1.8 67 72-138 121-189 (221)
70 PF13306 LRR_5: Leucine rich r 93.8 0.19 4.2E-06 40.0 6.2 32 265-298 12-44 (129)
71 PF00560 LRR_1: Leucine Rich R 93.7 0.046 1E-06 28.4 1.6 20 30-50 1-20 (22)
72 COG5238 RNA1 Ran GTPase-activa 93.5 0.018 3.8E-07 51.1 -0.4 38 239-276 212-253 (388)
73 PF13306 LRR_5: Leucine rich r 93.3 0.46 9.9E-06 37.8 7.6 57 213-273 8-66 (129)
74 PF13504 LRR_7: Leucine rich r 91.8 0.14 3E-06 24.7 1.6 9 369-377 2-10 (17)
75 smart00367 LRR_CC Leucine-rich 89.4 0.23 4.9E-06 27.0 1.3 17 391-407 1-17 (26)
76 smart00370 LRR Leucine-rich re 72.0 3.2 6.9E-05 22.3 1.7 18 392-410 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 72.0 3.2 6.9E-05 22.3 1.7 18 392-410 2-19 (26)
78 smart00364 LRR_BAC Leucine-ric 60.5 6 0.00013 21.5 1.2 18 392-410 2-19 (26)
79 PF05725 FNIP: FNIP Repeat; I 53.3 26 0.00056 21.7 3.5 29 290-318 13-42 (44)
80 PF13516 LRR_6: Leucine Rich r 52.8 11 0.00024 19.6 1.5 11 53-63 2-12 (24)
81 KOG3763 mRNA export factor TAP 52.3 7.1 0.00015 38.8 1.2 71 20-91 209-285 (585)
82 smart00365 LRR_SD22 Leucine-ri 38.8 27 0.00058 19.0 1.6 16 392-408 2-17 (26)
83 KOG3763 mRNA export factor TAP 34.7 25 0.00054 35.2 1.9 87 309-401 217-310 (585)
84 smart00368 LRR_RI Leucine rich 23.7 58 0.0013 17.8 1.4 11 53-63 2-12 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4.9e-28 Score=262.10 Aligned_cols=264 Identities=19% Similarity=0.161 Sum_probs=148.0
Q ss_pred hhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccc
Q 045021 19 DQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWM 97 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~ 97 (461)
..++.+ ++|++|+++++.-...+|..+.++++|++|++++|.....+|. ++.+++|++|+++++.....+|..+.
T Consensus 158 ~~~~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 158 NDIGSF----SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred hHHhcC----CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 346666 8889999888654446777888888888888888755445565 77788888888888764446676666
Q ss_pred cCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccC
Q 045021 98 CGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSK 176 (461)
Q Consensus 98 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 176 (461)
.. ++|++|+++++......+.. ..+++|+.|+++++.....+| ..+.. +++|+.|++++ +.+...+|.
T Consensus 234 ~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~------l~~L~~L~Ls~-n~l~~~~p~ 302 (968)
T PLN00113 234 GL--TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFS------LQKLISLDLSD-NSLSGEIPE 302 (968)
T ss_pred cC--CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc--hhHhh------ccCcCEEECcC-CeeccCCCh
Confidence 55 78888888876433333333 566778888887765333444 44443 45677777766 333321221
Q ss_pred CCCcch--hhhccc------------CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCC
Q 045021 177 NELPAT--LESLEV------------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ 242 (461)
Q Consensus 177 ~~~~~~--~~~~~~------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 242 (461)
. +... ++.+.+ ...+++|+.|++.++.....++..+..+++|+.|++++|.....+|.++..+++
T Consensus 303 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 303 L-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred h-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 1 0000 000000 001134555555554333344444555555555555554333344444444445
Q ss_pred ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021 243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
|+.|++++|.....++.....+++|+.|++.+|.....+|..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 55555554433333333333445666666666544444455555556666666555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=9.4e-28 Score=259.89 Aligned_cols=315 Identities=18% Similarity=0.165 Sum_probs=198.4
Q ss_pred cCCCCccccccch--hhhhh--hhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCc
Q 045021 4 DSCPKLQSLVAEE--EKDQQ--QQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKL 78 (461)
Q Consensus 4 ~~c~~l~~l~~~~--~~~~l--~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L 78 (461)
..+.+|++|..+. +.+.+ ..+ ++|++|+++++.-...+|..++.+++|++|++++|.....+|. ++.+++|
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~~~l----~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPRGSI----PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred ccCCCCCEEECcCCccccccCcccc----CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 3677888887631 11111 235 9999999999654347788899999999999999865556666 8899999
Q ss_pred cEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021 79 KKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY 157 (461)
Q Consensus 79 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (461)
++|++++|.....+|..+... ++|+.|+++++.....++.. ..+++|++|+++++.....+| ..+.. ++
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~------l~ 260 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP--SSLGN------LK 260 (968)
T ss_pred CeeeccCCCCcCcCChHHcCc--CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC--hhHhC------CC
Confidence 999999988556778777766 99999999987544445543 778999999999987555666 66665 66
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL 237 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 237 (461)
+|+.|++++ +.+...+|.. +.. +++|+.|++++|.....+|..+..+++|+.|++.+|......|..+
T Consensus 261 ~L~~L~L~~-n~l~~~~p~~-l~~----------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 261 NLQYLFLYQ-NKLSGPIPPS-IFS----------LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CCCEEECcC-CeeeccCchh-Hhh----------ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 899999998 5554312221 111 1456777776654444455556666666666666654444555556
Q ss_pred CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCc------------------------cccccccccCCCCCccE
Q 045021 238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCE------------------------RLEALPKGLHNLKSLKK 293 (461)
Q Consensus 238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~------------------------~~~~~~~~~~~l~~L~~ 293 (461)
..+++|+.|++++|.....++.....+++|+.|++++|. ....+|..+..+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 666666666666654333444433344455555555543 33334444555666666
Q ss_pred EEecc-cCC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 294 LRIGG-KLP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 294 L~l~~-~~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
|++++ .+. .++.. ..+++|+.|++++|. +....+ ..+..+++|+.|++++|
T Consensus 409 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARN 462 (968)
T ss_pred EECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCc
Confidence 66665 222 12211 334556666666554 221111 12334566666666665
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=9.2e-25 Score=237.19 Aligned_cols=344 Identities=22% Similarity=0.285 Sum_probs=274.1
Q ss_pred hhhhhhhhhcCCccEEEecCCc-----CC-ccccccCCCCC-CcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccc
Q 045021 19 DQQQQLCELSCRLEYLILRYCK-----GL-VKLPQSSLSLS-SLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKS 91 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~-----~l-~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~ 91 (461)
..+..+ ++|+.|.+.... .. ..+|..+..++ +|+.|++.++ .++.+|....+.+|+.|++.++. +..
T Consensus 552 ~aF~~m----~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~ 625 (1153)
T PLN03210 552 NAFKGM----RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEK 625 (1153)
T ss_pred HHHhcC----ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-ccc
Confidence 457777 999999996531 11 14566666664 6999999996 56778875568999999999965 888
Q ss_pred cCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCe
Q 045021 92 LPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLT 171 (461)
Q Consensus 92 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 171 (461)
++..+... ++|+.|+++++..++.++....+++|+.|++.+|..+..+| ..+.. +++|+.|++++|+.++
T Consensus 626 L~~~~~~l--~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp--~si~~------L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 LWDGVHSL--TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP--SSIQY------LNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccccC--CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc--hhhhc------cCCCCEEeCCCCCCcC
Confidence 88776655 99999999999889988888889999999999999998888 77766 7789999999999988
Q ss_pred ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCC
Q 045021 172 CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGC 251 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (461)
. +|...- +++|+.|++.+|..+...|.. ..+|++|+++++ .+..+|..+ .+++|+.|.+.++
T Consensus 696 ~-Lp~~i~------------l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 696 I-LPTGIN------------LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred c-cCCcCC------------CCCCCEEeCCCCCCccccccc---cCCcCeeecCCC-ccccccccc-ccccccccccccc
Confidence 7 665431 257999999999877766532 468999999886 467777655 5788999988775
Q ss_pred CCCc------cCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc--cCCCcCCCCCCCCcceEEeecCch
Q 045021 252 ENLV------SFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNME 322 (461)
Q Consensus 252 ~~l~------~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~~~~ 322 (461)
.... .++. ....+++|+.|++++|..+..+|..++++++|+.|++++ .+..+|....+++|+.|++++|..
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR 837 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence 3211 1111 122346899999999999999999999999999999998 778888777788999999999986
Q ss_pred hhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCC
Q 045021 323 IWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDC 402 (461)
Q Consensus 323 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C 402 (461)
+.... ...++|+.|+++++ ++..+|.. + ..+++|+.|++++|++++.++..+..+++|+.+++.+|
T Consensus 838 L~~~p-----~~~~nL~~L~Ls~n--~i~~iP~s-i------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 838 LRTFP-----DISTNISDLNLSRT--GIEEVPWW-I------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccc-----ccccccCEeECCCC--CCccChHH-H------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 64221 22468999999997 88888876 4 36789999999999999999888888999999999999
Q ss_pred CCCcccCC
Q 045021 403 PKLKYFSE 410 (461)
Q Consensus 403 ~~l~~~~~ 410 (461)
.+++.++-
T Consensus 904 ~~L~~~~l 911 (1153)
T PLN03210 904 GALTEASW 911 (1153)
T ss_pred cccccccC
Confidence 99987644
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-25 Score=209.55 Aligned_cols=360 Identities=18% Similarity=0.249 Sum_probs=158.9
Q ss_pred cCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCC-CCCccEEEEeecCCccccCcccccCCCCccc
Q 045021 28 SCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVAL-PSKLKKIEIRECDALKSLPEAWMCGTNSSLE 105 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 105 (461)
|+.-+.|++++ +.+.++ +..|.++++|+.+++..+ .++.+|.++. ..+|++|++..+. +..+...-... .+.|+
T Consensus 77 p~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~-l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSA-LPALR 152 (873)
T ss_pred ccceeeeeccc-cccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHh-Hhhhh
Confidence 34555566665 334433 334556666666666653 4555665333 3346666665532 44333221111 15566
Q ss_pred EEEeeCCCCCccccccCCC--CCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchh
Q 045021 106 ILKIWSCHSLPYIARVQLP--PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATL 183 (461)
Q Consensus 106 ~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 183 (461)
+||++. +.+++++....+ .++++|+++++. ++.+. .+-.. ++.+|..|.++. ++++. +|.-.|...
T Consensus 153 slDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~--~~~F~-----~lnsL~tlkLsr-Nritt-Lp~r~Fk~L- 220 (873)
T KOG4194|consen 153 SLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLE--TGHFD-----SLNSLLTLKLSR-NRITT-LPQRSFKRL- 220 (873)
T ss_pred hhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccc--ccccc-----ccchheeeeccc-Ccccc-cCHHHhhhc-
Confidence 666655 344444443221 345555555532 33222 21111 122344555555 44444 333222211
Q ss_pred hhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CC
Q 045021 184 ESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GG 261 (461)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~ 261 (461)
++|+.|++.++ .+..+ ...+..+++|+.|.+..|..-+--...|-.+.++++|++..| .+..+.. -.
T Consensus 221 ---------~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~l 289 (873)
T KOG4194|consen 221 ---------PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWL 289 (873)
T ss_pred ---------chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccc
Confidence 44555555542 22221 224455555555555544222222234444555555555554 3333332 22
Q ss_pred CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCC--CCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021 262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDG--LPTNLHFLKIERNMEIWKSMIERGFHKFSSL 338 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 338 (461)
..++.|+.|+++.+..-..-+.+.+.+++|+.|++++ .+..++... .+..|++|.++.|. ++ ......+..+++|
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~-~l~e~af~~lssL 367 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-ID-HLAEGAFVGLSSL 367 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hH-HHHhhHHHHhhhh
Confidence 3344555555555322222233444455555555555 555554442 23455555555554 22 2222234455555
Q ss_pred CEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC-ccc
Q 045021 339 RHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL-PSS 416 (461)
Q Consensus 339 ~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~-~~~ 416 (461)
++|++++| .+.-.-+++-+ ....+++|++|++.| ++++.|+ ..+.++++|++|++.+ +-|.++..+.+ +-.
T Consensus 368 ~~LdLr~N--~ls~~IEDaa~---~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~ 440 (873)
T KOG4194|consen 368 HKLDLRSN--ELSWCIEDAAV---AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPME 440 (873)
T ss_pred hhhcCcCC--eEEEEEecchh---hhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccch
Confidence 55555554 22211111000 001345555555555 4555555 3445555555555555 55555444322 234
Q ss_pred ccEeecc
Q 045021 417 LLRLYID 423 (461)
Q Consensus 417 L~~L~i~ 423 (461)
|++|.++
T Consensus 441 Lk~Lv~n 447 (873)
T KOG4194|consen 441 LKELVMN 447 (873)
T ss_pred hhhhhhc
Confidence 4444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-24 Score=202.38 Aligned_cols=361 Identities=16% Similarity=0.239 Sum_probs=273.5
Q ss_pred CCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021 53 SSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK 128 (461)
Q Consensus 53 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 128 (461)
+.-+.|+++++ ++.++.. +..+++|+++++..+. ++.+|...... .+|+.|++.+ +.++.+... ..++.|+
T Consensus 78 ~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~s--ghl~~L~L~~-N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHES--GHLEKLDLRH-NLISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeecccc-ccccCcHHHHhcCCcceeeeeccch-hhhcccccccc--cceeEEeeec-cccccccHHHHHhHhhhh
Confidence 45677999996 6665544 7889999999999965 88998776665 7899999988 566655443 6778999
Q ss_pred EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021 129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 208 (461)
+|+++.+. +..++ ..-.. ..+++++|++.+ +.++. +..+.|... .+|..|.+++ +.++.
T Consensus 153 slDLSrN~-is~i~--~~sfp-----~~~ni~~L~La~-N~It~-l~~~~F~~l----------nsL~tlkLsr-Nritt 211 (873)
T KOG4194|consen 153 SLDLSRNL-ISEIP--KPSFP-----AKVNIKKLNLAS-NRITT-LETGHFDSL----------NSLLTLKLSR-NRITT 211 (873)
T ss_pred hhhhhhch-hhccc--CCCCC-----CCCCceEEeecc-ccccc-ccccccccc----------chheeeeccc-Ccccc
Confidence 99999854 55554 22111 135799999999 99998 777766654 5799999999 46666
Q ss_pred hHH-hhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccc-ccc
Q 045021 209 IAE-RLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEAL-PKG 284 (461)
Q Consensus 209 ~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~-~~~ 284 (461)
+|. .++++++|+.|++..| .++.. .-.|.++++|+.|.+..| .+..+.. .+..+.++++|++..+ +++.+ ..+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~ 288 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW 288 (873)
T ss_pred cCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccc-hhhhhhccc
Confidence 665 7888999999999886 55544 456888999999999997 5666665 4455779999999985 45444 347
Q ss_pred cCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021 285 LHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361 (461)
Q Consensus 285 ~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~ 361 (461)
+.++++|+.|++++ .++.+... .++++|+.|++++|. ++ ..+...+..+..|++|.+++| ++..+.+.++
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~-~l~~~sf~~L~~Le~LnLs~N--si~~l~e~af--- 361 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-IT-RLDEGSFRVLSQLEELNLSHN--SIDHLAEGAF--- 361 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cc-cCChhHHHHHHHhhhhccccc--chHHHHhhHH---
Confidence 88999999999999 88777765 567999999999998 33 344556888999999999998 8888888766
Q ss_pred CCCCCCCCcceeecCCCCCCcc----cccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCchhHHhhccc
Q 045021 362 TTLPLPASLASLTIGDFPNLER----LSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPLIEEKCRKD 435 (461)
Q Consensus 362 ~~~~~~~~L~~L~l~~~~~l~~----i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~l~~~~~~~ 435 (461)
..+.+|++||++. +.+.. -...+..+++|+.|.+.| +++++++...+ ++.|++|++.+++....+
T Consensus 362 ---~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq---- 432 (873)
T KOG4194|consen 362 ---VGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQ---- 432 (873)
T ss_pred ---HHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeec----
Confidence 4778999999998 56532 225577899999999999 99999988544 699999999998755433
Q ss_pred CccccccccccceEEEcccEEecCC
Q 045021 436 GEQYWDLLTHIPRVRIHLPVVFDDS 460 (461)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (461)
...+.+. +++.+.+....+-|||
T Consensus 433 -~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 433 -PNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred -ccccccc-hhhhhhhcccceEEec
Confidence 2233333 5555555555555544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.8e-22 Score=217.89 Aligned_cols=284 Identities=22% Similarity=0.335 Sum_probs=144.6
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
.+|++|++.+ ..+..+|..+..+++|++|+++++..+..+|.++.+++|+.|++++|..+..+|..+... ++|+.|+
T Consensus 611 ~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLD 687 (1153)
T ss_pred cCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc--CCCCEEe
Confidence 3444444444 223444444445555555555554444445545555555555555555555555444433 5555555
Q ss_pred eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV 188 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 188 (461)
+++|+.++.+|....+++|+.|++++|..+..+| ... .+|+.|++++ +.+.. +|...-
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~---------~nL~~L~L~~-n~i~~-lP~~~~--------- 745 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DIS---------TNISWLDLDE-TAIEE-FPSNLR--------- 745 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--ccc---------CCcCeeecCC-Ccccc-cccccc---------
Confidence 5555555555444444555555555554444443 211 1355555554 33333 322210
Q ss_pred CCCCCCccEEEEecCCchh------hh-HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021 189 GNQPPSLKSLNVWSCSKLE------SI-AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG 261 (461)
Q Consensus 189 ~~~~~~L~~L~l~~~~~l~------~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 261 (461)
+++|+.|.+.++.... .+ +.....+++|+.|++++|..+..+|.+++++++|+.|++++|..++.+|...
T Consensus 746 ---l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 746 ---LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ---ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 1334444444321110 00 0011223566666666666666666666666666666666666666665543
Q ss_pred CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021 262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR 339 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 339 (461)
.+++|+.|++++|..+..+|. ..++|++|++++ .+..+|.. ..+++|++|++++|..+..... ....+++|+
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~ 896 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLE 896 (1153)
T ss_pred -CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCC
Confidence 345666666666666665543 234566666666 55555543 4455666666666665553222 234556666
Q ss_pred EEEEecC
Q 045021 340 HLTIEGC 346 (461)
Q Consensus 340 ~L~l~~~ 346 (461)
.+++++|
T Consensus 897 ~L~l~~C 903 (1153)
T PLN03210 897 TVDFSDC 903 (1153)
T ss_pred eeecCCC
Confidence 6666665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.4e-23 Score=197.14 Aligned_cols=344 Identities=20% Similarity=0.272 Sum_probs=205.4
Q ss_pred hhhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCcc--ccC
Q 045021 17 EKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALK--SLP 93 (461)
Q Consensus 17 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~--~~~ 93 (461)
|...+.++ .+++-|.|.. .++..+|+.++.+.+|++|.+.++ .+.++.. +..++.|+.+.+..+. ++ -+|
T Consensus 24 FP~~v~qM----t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~-LKnsGiP 96 (1255)
T KOG0444|consen 24 FPHDVEQM----TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNN-LKNSGIP 96 (1255)
T ss_pred CchhHHHh----hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccc-cccCCCC
Confidence 33556666 7888888877 667777887888888888888875 4444433 6777788888777644 43 367
Q ss_pred cccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCee
Q 045021 94 EAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTC 172 (461)
Q Consensus 94 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 172 (461)
.+++.. ..|+.|++++ ++++..|.. ....++-+|+++++ +++.+| ..+.- +|.
T Consensus 97 ~diF~l--~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N-~IetIP--n~lfi--------nLt------------ 150 (1255)
T KOG0444|consen 97 TDIFRL--KDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYN-NIETIP--NSLFI--------NLT------------ 150 (1255)
T ss_pred chhccc--ccceeeecch-hhhhhcchhhhhhcCcEEEEcccC-ccccCC--chHHH--------hhH------------
Confidence 777766 7778888877 566666654 45566667777763 355666 43321 111
Q ss_pred cccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCC
Q 045021 173 IFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCE 252 (461)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 252 (461)
-|-.|++++ +.++.+|.-+.++..|++|.+++++-.-.--..+..+.+|+.|.+++..
T Consensus 151 ---------------------DLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 151 ---------------------DLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred ---------------------hHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 144444444 3444444445555555555555554221101122334555555555432
Q ss_pred C-CccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhh
Q 045021 253 N-LVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIE 329 (461)
Q Consensus 253 ~-l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~ 329 (461)
. +.++|...-.+.+|..++++. +++..+|..+..+++|+.|++++ .++.+... +.-.+|++|+++.|. ++ ..+
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt-~LP- 284 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LT-VLP- 284 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hc-cch-
Confidence 2 334555444445666666654 45555666666666666666666 44443322 222466777777665 22 111
Q ss_pred hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021 330 RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS 409 (461)
Q Consensus 330 ~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~ 409 (461)
..+-.++.|+.|.+.+|...++-||.+ +| .+.+|+.+...+ +.++-+|+++.+|..|+.|.+.. +.+-.+|
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IG------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLP 355 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IG------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLP 355 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccc-hh------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeech
Confidence 135566777777777765556667766 54 556677777776 57777777777777777777765 6666666
Q ss_pred CC-CCcccccEeeccCCchh
Q 045021 410 EK-GLPSSLLRLYIDECPLI 428 (461)
Q Consensus 410 ~~-~~~~~L~~L~i~~c~~l 428 (461)
.. .+++.|+.|++..+|.+
T Consensus 356 eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhcCCcceeeccCCcCc
Confidence 64 45677777777777654
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=4e-22 Score=196.84 Aligned_cols=365 Identities=20% Similarity=0.200 Sum_probs=184.3
Q ss_pred hhhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcc
Q 045021 17 EKDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEA 95 (461)
Q Consensus 17 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~ 95 (461)
|-..+..+ ++|+.|++++ +.+...|...+++.+|++|.|.++ .+..+|. +..+.+|+.|+++++. ...+|.-
T Consensus 60 fp~~it~l----~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~ 132 (1081)
T KOG0618|consen 60 FPIQITLL----SHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNH-FGPIPLV 132 (1081)
T ss_pred CCchhhhH----HHHhhcccch-hhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhc-cCCCchh
Confidence 33444455 6677777766 555666766777777777777764 5566665 6667777777777743 4444422
Q ss_pred cccCC-----------------CCcccEEEeeCCCCCccccccCCCCCccE-EecccCC----------CceEeccCCCc
Q 045021 96 WMCGT-----------------NSSLEILKIWSCHSLPYIARVQLPPSLKR-LDISHCD----------NIRTLTVEDGI 147 (461)
Q Consensus 96 ~~~~~-----------------~~~L~~L~l~~~~~l~~~~~~~~~~~L~~-L~l~~~~----------~~~~l~~~~~~ 147 (461)
+.... -..++.+++.....-..+... ...+++ +++.++. +++.+. -.-
T Consensus 133 i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~--i~~l~~~ldLr~N~~~~~dls~~~~l~~l~--c~r 208 (1081)
T KOG0618|consen 133 IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID--IYNLTHQLDLRYNEMEVLDLSNLANLEVLH--CER 208 (1081)
T ss_pred HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc--hhhhheeeecccchhhhhhhhhccchhhhh--hhh
Confidence 21110 011222222221111111111 011222 3443322 222111 000
Q ss_pred cc-ccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccc
Q 045021 148 QS-SSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILW 226 (461)
Q Consensus 148 ~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 226 (461)
.. +.-....++++.|..+. +.+.. .... -.+.+|++++++. ..+..+|+++..+.+|+.+....
T Consensus 209 n~ls~l~~~g~~l~~L~a~~-n~l~~-~~~~------------p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 209 NQLSELEISGPSLTALYADH-NPLTT-LDVH------------PVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred cccceEEecCcchheeeecc-Cccee-eccc------------cccccceeeecch-hhhhcchHHHHhcccceEecccc
Confidence 00 00011133444444444 22221 1111 1234688998888 57777888888899999999887
Q ss_pred cccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc-CCCC-CccEEEecc-cCCCc
Q 045021 227 CENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL-HNLK-SLKKLRIGG-KLPSL 303 (461)
Q Consensus 227 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~~l~-~L~~L~l~~-~~~~l 303 (461)
+ .+..+|..+....+|+.|.+..| .++.++....+.++|++|++.. +.+..+|..+ .... +|+.|..+. .+...
T Consensus 274 N-~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 274 N-RLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred h-hHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 6 44666666666778888888876 6777787777777888888887 3555555522 1111 234444433 33333
Q ss_pred CCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCC
Q 045021 304 EED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL 381 (461)
Q Consensus 304 ~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l 381 (461)
+.. ...+.|+.|.+.+|. +++.... .+.++++|+.|++++| ++..||.... ..++.|++|+++| +++
T Consensus 351 p~~~e~~~~~Lq~LylanN~-Ltd~c~p-~l~~~~hLKVLhLsyN--rL~~fpas~~------~kle~LeeL~LSG-NkL 419 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNH-LTDSCFP-VLVNFKHLKVLHLSYN--RLNSFPASKL------RKLEELEELNLSG-NKL 419 (1081)
T ss_pred ccccchhhHHHHHHHHhcCc-ccccchh-hhccccceeeeeeccc--ccccCCHHHH------hchHHhHHHhccc-chh
Confidence 322 223445555555554 2222211 2445555666666655 5555555422 2344555555555 455
Q ss_pred cccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeec
Q 045021 382 ERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYI 422 (461)
Q Consensus 382 ~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i 422 (461)
+.+|..+..++.|++|...+ ++|..+|+....+.|+.+|+
T Consensus 420 ~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 420 TTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred hhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEec
Confidence 55554444444444444443 44444443222344444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=4.9e-22 Score=188.34 Aligned_cols=320 Identities=21% Similarity=0.322 Sum_probs=250.5
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCccc
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPEAW 96 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~ 96 (461)
.++++ ++|++|.+++ +++..+-+.+..+|.|+.++++.+ .++ .+|. +..+..|..|+++.+. ++..|...
T Consensus 50 EL~~l----qkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L 122 (1255)
T KOG0444|consen 50 ELSRL----QKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL 122 (1255)
T ss_pred HHHHH----hhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhhcchhh
Confidence 47777 8999999988 566777777888899999999885 343 5666 8888999999999955 88888776
Q ss_pred ccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecc
Q 045021 97 MCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF 174 (461)
Q Consensus 97 ~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 174 (461)
-.. .++-.|++++ +++..+|.. .+++.|-.|+++++. ++.+| .-+.. +..|+.|++++ +-+.. +
T Consensus 123 E~A--Kn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LP--PQ~RR------L~~LqtL~Ls~-NPL~h-f 188 (1255)
T KOG0444|consen 123 EYA--KNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLP--PQIRR------LSMLQTLKLSN-NPLNH-F 188 (1255)
T ss_pred hhh--cCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcC--HHHHH------HhhhhhhhcCC-ChhhH-H
Confidence 655 7888899988 577777765 667788888998854 77777 65555 55788888888 55554 5
Q ss_pred cCCCCcchhhhcccCCCCCCccEEEEecC-CchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCC
Q 045021 175 SKNELPATLESLEVGNQPPSLKSLNVWSC-SKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCEN 253 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 253 (461)
..-.+|+. +.|+.|.+++. ..+..+|..+..+.+|..++++.+ .+..+|+.+-++++|+.|++++| .
T Consensus 189 QLrQLPsm----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~ 256 (1255)
T KOG0444|consen 189 QLRQLPSM----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-K 256 (1255)
T ss_pred HHhcCccc----------hhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-c
Confidence 55555555 56888888764 234566778888999999999975 77888998989999999999997 6
Q ss_pred CccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc---cCCCcCCC-CCCCCcceEEeecCchhhHHhhh
Q 045021 254 LVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG---KLPSLEED-GLPTNLHFLKIERNMEIWKSMIE 329 (461)
Q Consensus 254 l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~---~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~ 329 (461)
++.+......+.+|++|+++. ++++.+|..+-.+++|+.|.+.+ ....+|.+ +.+.+|+.+...+|. ++ ...
T Consensus 257 iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE--lVP 332 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE--LVP 332 (1255)
T ss_pred eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc--cCc
Confidence 677666555566899999998 57889999999999999999888 66788876 777789999888876 33 223
Q ss_pred hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021 330 RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS 385 (461)
Q Consensus 330 ~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 385 (461)
.++.+++.|+.|.+++| ++..+|+. + ..++.|+.||+.+.+++-.-|
T Consensus 333 EglcRC~kL~kL~L~~N--rLiTLPea-I------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHN--RLITLPEA-I------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhHHHHHhccccc--ceeechhh-h------hhcCCcceeeccCCcCccCCC
Confidence 36788999999999987 88889887 5 478899999999988876554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=4.2e-22 Score=179.46 Aligned_cols=353 Identities=20% Similarity=0.225 Sum_probs=188.7
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec---------------------
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC--------------------- 86 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~--------------------- 86 (461)
+.+++|++.+ +++..+|..++.+..++.|+++.+ ++..+|+ ++...+|++++++.+
T Consensus 68 ~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEecc-chhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 5555565555 334455554555444555554443 3333444 444444444444442
Q ss_pred -CCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEE
Q 045021 87 -DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEI 164 (461)
Q Consensus 87 -~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 164 (461)
..+.++|++++.. .+|..+++.+ +.++..++. ..+..|++++..... ++.+| ..++. +.+|+.|++
T Consensus 146 ~N~i~slp~~~~~~--~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP--~~lg~------l~~L~~LyL 213 (565)
T KOG0472|consen 146 NNQISSLPEDMVNL--SKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSNL-LETLP--PELGG------LESLELLYL 213 (565)
T ss_pred ccccccCchHHHHH--HHHHHhhccc-cchhhCCHHHHHHHHHHhcccchhh-hhcCC--hhhcc------hhhhHHHHh
Confidence 2355555555444 5566666655 344444333 335667777766533 56677 66665 456777777
Q ss_pred ecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHH-hhcCCCccceeeccccccceecccccCCCCCc
Q 045021 165 WDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKFLPSGLHNLRQL 243 (461)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 243 (461)
.. ++++. .|...-. ..|+++.+.. ..++.++. ....+.++..|++..+ +++++|..+..+.+|
T Consensus 214 ~~-Nki~~-lPef~gc------------s~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 214 RR-NKIRF-LPEFPGC------------SLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred hh-ccccc-CCCCCcc------------HHHHHHHhcc-cHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 77 77776 5522222 2366666665 45555554 3346777777777764 667777767677777
Q ss_pred cEEEecCCCCCccCCCCCCCCCCcceEeeccCcccc-------------------------------------cccc---
Q 045021 244 QEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLE-------------------------------------ALPK--- 283 (461)
Q Consensus 244 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~-------------------------------------~~~~--- 283 (461)
++||+++| .+..+|...+.+ +|++|-+.|++--+ ..+.
T Consensus 278 ~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 77777765 556666655555 66666666642110 0000
Q ss_pred -ccCCCCCccEEEecc-cCCCcCCCC----CCCCcceEEeecCchhhH---------------------HhhhhcccCCC
Q 045021 284 -GLHNLKSLKKLRIGG-KLPSLEEDG----LPTNLHFLKIERNMEIWK---------------------SMIERGFHKFS 336 (461)
Q Consensus 284 -~~~~l~~L~~L~l~~-~~~~l~~~~----~~~~L~~L~l~~~~~l~~---------------------~~~~~~~~~l~ 336 (461)
......+.+.|++++ .+..+|... .-.-...++++.|...+- .+....+..++
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 122355677777777 555555321 111133344444431110 11222355678
Q ss_pred CcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021 337 SLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--P 414 (461)
Q Consensus 337 ~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~ 414 (461)
+|..|++++| -+..+|.+ ++ ....||+|+++. ++.+.+|...-....|+.+..++ +++..+++.++ .
T Consensus 436 kLt~L~L~NN--~Ln~LP~e-~~------~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 436 KLTFLDLSNN--LLNDLPEE-MG------SLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNM 504 (565)
T ss_pred cceeeecccc--hhhhcchh-hh------hhhhhheecccc-cccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhh
Confidence 8888888887 67788887 43 555688888887 46666553222223333333333 44444443322 2
Q ss_pred ccccEeeccC
Q 045021 415 SSLLRLYIDE 424 (461)
Q Consensus 415 ~~L~~L~i~~ 424 (461)
.+|.+|++++
T Consensus 505 ~nL~tLDL~n 514 (565)
T KOG0472|consen 505 RNLTTLDLQN 514 (565)
T ss_pred hhcceeccCC
Confidence 3444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=6.6e-21 Score=171.80 Aligned_cols=358 Identities=22% Similarity=0.266 Sum_probs=205.5
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCccccc
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMC 98 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~ 98 (461)
++.++ +.+++|++++ +.+.++++.++.+-.|+.|+-.++ .+.++|+ +..+.+|..+++.++. ++.+|+...+
T Consensus 109 ~i~s~----~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~ 181 (565)
T KOG0472|consen 109 QIGSL----ISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA 181 (565)
T ss_pred HHhhh----hhhhhhhccc-cceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH
Confidence 46666 7888888887 556778888888888888887775 4555666 7777777777777744 6777766666
Q ss_pred CCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCC
Q 045021 99 GTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN 177 (461)
Q Consensus 99 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 177 (461)
+ ..|++++... +.++.+|+. +.+.+|..|++...+ +..+| .+.. +..|++|+++. +++.. +|.+
T Consensus 182 m--~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP---ef~g------cs~L~Elh~g~-N~i~~-lpae 246 (565)
T KOG0472|consen 182 M--KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNK-IRFLP---EFPG------CSLLKELHVGE-NQIEM-LPAE 246 (565)
T ss_pred H--HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcc-cccCC---CCCc------cHHHHHHHhcc-cHHHh-hHHH
Confidence 5 6777777654 445555554 666667777776643 44444 1111 22466666665 55544 4443
Q ss_pred CCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCC----
Q 045021 178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCEN---- 253 (461)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---- 253 (461)
..... +++..|++++ ..+...|..+..+.+|++|+++++ .+..+|.+++++ .|+.|.+.+|+-
T Consensus 247 ~~~~L----------~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 247 HLKHL----------NSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred Hhccc----------ccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHH
Confidence 32222 4566666666 456666666666666666666654 455566666666 666666655530
Q ss_pred -----------------------Cc----------cCCC----CCCCCCCcceEeeccCccccccccccCCCC---CccE
Q 045021 254 -----------------------LV----------SFPE----GGLPCAKLSKLGIYRCERLEALPKGLHNLK---SLKK 293 (461)
Q Consensus 254 -----------------------l~----------~l~~----~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~---~L~~ 293 (461)
+. ..+. ......+.+.|++++ .+++.+|..+.... -...
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEE
Confidence 00 0000 001122456666655 44555554221111 1222
Q ss_pred EEecc------------------------cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021 294 LRIGG------------------------KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD 347 (461)
Q Consensus 294 L~l~~------------------------~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 347 (461)
.+++. +..+++.. ...++|..|++++|. +. ..+. .+..+..|+.|+++.|
T Consensus 393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln-~LP~-e~~~lv~Lq~LnlS~N- 468 (565)
T KOG0472|consen 393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LN-DLPE-EMGSLVRLQTLNLSFN- 468 (565)
T ss_pred EecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hh-hcch-hhhhhhhhheeccccc-
Confidence 33332 22222222 334688888888886 32 2222 3556677888888887
Q ss_pred CcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCC
Q 045021 348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDEC 425 (461)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c 425 (461)
+++.+|.. +. .+..++.+-.++ +.+.+++ .++..+.+|..|++.+ +.+..+|.. +-..+|++|++.++
T Consensus 469 -rFr~lP~~-~y------~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 469 -RFRMLPEC-LY------ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred -ccccchHH-Hh------hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 77777775 21 233344444444 4566665 3466677777777776 666666663 33567777777776
Q ss_pred ch
Q 045021 426 PL 427 (461)
Q Consensus 426 ~~ 427 (461)
|.
T Consensus 539 pf 540 (565)
T KOG0472|consen 539 PF 540 (565)
T ss_pred cc
Confidence 64
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=172.87 Aligned_cols=356 Identities=21% Similarity=0.249 Sum_probs=242.2
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec------------
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC------------ 86 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~------------ 86 (461)
...++ .+|++|.|.+ +.+..+|.++..+++|++|+++.+ .+..+|. +..+..+..+..+++
T Consensus 86 s~~~~----~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik 159 (1081)
T KOG0618|consen 86 SCSNM----RNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIK 159 (1081)
T ss_pred hhhhh----hcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccch
Confidence 36677 9999999987 677899999999999999999996 4455665 444444444444433
Q ss_pred -------CCccccCcccccCCCCcccE-EEeeCCC----------CCcccccc--------CCCCCccEEecccCCCceE
Q 045021 87 -------DALKSLPEAWMCGTNSSLEI-LKIWSCH----------SLPYIARV--------QLPPSLKRLDISHCDNIRT 140 (461)
Q Consensus 87 -------~~l~~~~~~~~~~~~~~L~~-L~l~~~~----------~l~~~~~~--------~~~~~L~~L~l~~~~~~~~ 140 (461)
.....++.+. ..++. |+++++. +++.+... ..-++++.|+..++...+.
T Consensus 160 ~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred hhhhhhhhcccchhcch-----hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee
Confidence 1111122221 33333 5555532 11111100 1114455555555543322
Q ss_pred eccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccc
Q 045021 141 LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLE 220 (461)
Q Consensus 141 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 220 (461)
.+ ..... +++.++++. ++++. +| .|+.. |.+|+.++... +.+..++..+....+|+
T Consensus 235 ~~--~p~p~--------nl~~~dis~-n~l~~-lp-----~wi~~------~~nle~l~~n~-N~l~~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 235 DV--HPVPL--------NLQYLDISH-NNLSN-LP-----EWIGA------CANLEALNANH-NRLVALPLRISRITSLV 290 (1081)
T ss_pred cc--ccccc--------cceeeecch-hhhhc-ch-----HHHHh------cccceEecccc-hhHHhhHHHHhhhhhHH
Confidence 22 22222 689999998 77776 44 33211 25899999988 56788888888899999
Q ss_pred eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCC--CCCcceEeeccCcccccccc-ccCCCCCccEEEec
Q 045021 221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLP--CAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIG 297 (461)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~ 297 (461)
.|....| .++.+|.....+++|++|++..| ++..+|..... ...++.+..+. ..+...|. .-...+.|+.|.+.
T Consensus 291 ~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 291 SLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHh
Confidence 9999886 67888888888999999999997 66777762222 11245554443 34444443 22356788888888
Q ss_pred c---cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceee
Q 045021 298 G---KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT 374 (461)
Q Consensus 298 ~---~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~ 374 (461)
+ .-..+|....+..|+.|++++|+ +. .++...+.++..|++|++++| .+..++.. . ..++.|++|.
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~-~fpas~~~kle~LeeL~LSGN--kL~~Lp~t-v------a~~~~L~tL~ 436 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNR-LN-SFPASKLRKLEELEELNLSGN--KLTTLPDT-V------ANLGRLHTLR 436 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccc-cc-cCCHHHHhchHHhHHHhcccc--hhhhhhHH-H------HhhhhhHHHh
Confidence 8 55567777778899999999997 22 345556788999999999998 88999876 4 3677899998
Q ss_pred cCCCCCCcccccchhhccCCcEEEecCCCCCcccCC-CCCc-ccccEeeccCCch
Q 045021 375 IGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE-KGLP-SSLLRLYIDECPL 427 (461)
Q Consensus 375 l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~-~~~~-~~L~~L~i~~c~~ 427 (461)
..+ +.+..+| .+..+++|+.++++. ++++.+-. ..++ ++|++|++++++.
T Consensus 437 ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 437 AHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 888 6888887 778899999999975 88888644 3456 8999999999875
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=5.5e-14 Score=143.32 Aligned_cols=256 Identities=27% Similarity=0.341 Sum_probs=141.9
Q ss_pred ccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021 78 LKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY 157 (461)
Q Consensus 78 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (461)
-..|+++++. ++.+|..+. ++|+.|++.+ +.++.+|. .+++|++|+++++ .++.+| ... +
T Consensus 203 ~~~LdLs~~~-LtsLP~~l~----~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP--~lp---------~ 262 (788)
T PRK15387 203 NAVLNVGESG-LTTLPDCLP----AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSLP--VLP---------P 262 (788)
T ss_pred CcEEEcCCCC-CCcCCcchh----cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCccc--Ccc---------c
Confidence 4455555543 555555432 3456666655 34554443 2455666666654 344444 211 2
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL 237 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 237 (461)
+|+.|++.+ +.+.. ++. .+ ++|+.|++.++ .+..+|. .+++|+.|++++| .+..+|..
T Consensus 263 sL~~L~Ls~-N~L~~-Lp~--lp------------~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l- 320 (788)
T PRK15387 263 GLLELSIFS-NPLTH-LPA--LP------------SGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPAL- 320 (788)
T ss_pred ccceeeccC-Cchhh-hhh--ch------------hhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCCC-
Confidence 466666655 44443 222 11 23666666553 3444432 2356666676665 34444432
Q ss_pred CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEE
Q 045021 238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLK 316 (461)
Q Consensus 238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~ 316 (461)
..+|+.|++++| .+..+|.. ..+|+.|++++| .++.+|.. .++|+.|++++ .+..+|. .+++|+.|+
T Consensus 321 --p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~--l~~~L~~Ld 388 (788)
T PRK15387 321 --PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPA--LPSGLKELI 388 (788)
T ss_pred --cccccccccccC-cccccccc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCcc--cccccceEE
Confidence 135666666665 44455431 136777777663 45555542 24566666666 5555553 245677777
Q ss_pred eecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcE
Q 045021 317 IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKY 396 (461)
Q Consensus 317 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~ 396 (461)
+++|. +.. .+ ...++|+.|++++| .+..+|. .+.+|+.|++++ +.++.+|..+..+++|+.
T Consensus 389 Ls~N~-Lt~-LP----~l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~ 449 (788)
T PRK15387 389 VSGNR-LTS-LP----VLPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETT 449 (788)
T ss_pred ecCCc-ccC-CC----CcccCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCe
Confidence 77775 321 11 11357788888876 6666664 234677788887 567778777777888888
Q ss_pred EEecCCCCCcc
Q 045021 397 LKLYDCPKLKY 407 (461)
Q Consensus 397 L~l~~C~~l~~ 407 (461)
|++++ |.++.
T Consensus 450 LdLs~-N~Ls~ 459 (788)
T PRK15387 450 VNLEG-NPLSE 459 (788)
T ss_pred EECCC-CCCCc
Confidence 88887 55654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=1.4e-13 Score=140.31 Aligned_cols=116 Identities=28% Similarity=0.336 Sum_probs=73.4
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
.+-..|+++++ +++.+|..+. ++|+.|++.+| .++.+|. .+++|++|+++++. ++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 44567788774 5677777665 47888888875 5676764 35788888888854 7777642 15677777
Q ss_pred eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCee
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTC 172 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 172 (461)
+.++ .++.++. .+.+|+.|+++++. ++.+| .. .++|+.|++++ ++++.
T Consensus 269 Ls~N-~L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP--~~---------p~~L~~LdLS~-N~L~~ 316 (788)
T PRK15387 269 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP--VL---------PPGLQELSVSD-NQLAS 316 (788)
T ss_pred ccCC-chhhhhh--chhhcCEEECcCCc-ccccc--cc---------ccccceeECCC-Ccccc
Confidence 7764 4555443 33566777777653 44454 31 23567777766 55554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=4.6e-13 Score=137.40 Aligned_cols=76 Identities=18% Similarity=0.349 Sum_probs=34.0
Q ss_pred CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC----
Q 045021 336 SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK---- 411 (461)
Q Consensus 336 ~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~---- 411 (461)
++|+.|++++| .+..+|.. .+++|+.|++++| .+..+|..+. .+|+.|++++ ++++.+|..
T Consensus 346 ~sL~~L~Ls~N--~L~~LP~~---------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~ 410 (754)
T PRK15370 346 PELQVLDVSKN--QITVLPET---------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHF 410 (754)
T ss_pred CcccEEECCCC--CCCcCChh---------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHH
Confidence 35555555554 44444442 2345555555552 4444443322 2455555555 444444431
Q ss_pred -CCcccccEeeccCCc
Q 045021 412 -GLPSSLLRLYIDECP 426 (461)
Q Consensus 412 -~~~~~L~~L~i~~c~ 426 (461)
+..+.+..+++.++|
T Consensus 411 ~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 RGEGPQPTRIIVEYNP 426 (754)
T ss_pred hhcCCCccEEEeeCCC
Confidence 012344555555554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=2.3e-15 Score=136.11 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=63.3
Q ss_pred hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCC
Q 045021 212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKS 290 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~ 290 (461)
.++.+++|++|+++++..-..-+.+|.....++.|.+..| .++.+.. ....+..|+.|++.+++.-+.-|.+|..+.+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 6788999999999987433444678888899999999887 5565544 3445668899999985544444667888888
Q ss_pred ccEEEecc
Q 045021 291 LKKLRIGG 298 (461)
Q Consensus 291 L~~L~l~~ 298 (461)
|.+|.+-.
T Consensus 348 l~~l~l~~ 355 (498)
T KOG4237|consen 348 LSTLNLLS 355 (498)
T ss_pred eeeeehcc
Confidence 88887654
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.39 E-value=5.9e-15 Score=134.51 Aligned_cols=151 Identities=18% Similarity=0.267 Sum_probs=80.4
Q ss_pred ccEEEEecCCchhhh--HHhhcCCCccceeeccccccceecc--cccCCCCCccEEEecCCCCCccC--CCCCCCCCCcc
Q 045021 195 LKSLNVWSCSKLESI--AERLDNNTSLEMISILWCENLKFLP--SGLHNLRQLQEIQLWGCENLVSF--PEGGLPCAKLS 268 (461)
Q Consensus 195 L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~l--~~~~~~~~~L~ 268 (461)
+.++++..|..+++. ...-..+..|+.+..++|..+.+.+ ..-.+.++|+.+.+++|..+.+. ....-.++.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 444444444444332 2233445566666666655543321 22234466666666666544432 11333455666
Q ss_pred eEeeccCccccc--cccccCCCCCccEEEecc-------cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021 269 KLGIYRCERLEA--LPKGLHNLKSLKKLRIGG-------KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSL 338 (461)
Q Consensus 269 ~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~-------~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 338 (461)
.+++.+|..+.. +...-.+++.|++|.++. ++..+... .....|+.+.+.+|+.+++.... .+..+++|
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~L 428 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNL 428 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCccc
Confidence 666666654432 222234566666666665 11111211 23457888888888877655543 46777888
Q ss_pred CEEEEecC
Q 045021 339 RHLTIEGC 346 (461)
Q Consensus 339 ~~L~l~~~ 346 (461)
+.+++.+|
T Consensus 429 eri~l~~~ 436 (483)
T KOG4341|consen 429 ERIELIDC 436 (483)
T ss_pred ceeeeech
Confidence 88888887
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.3e-12 Score=134.03 Aligned_cols=246 Identities=21% Similarity=0.361 Sum_probs=164.6
Q ss_pred CcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcc
Q 045021 102 SSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPA 181 (461)
Q Consensus 102 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 181 (461)
.+...|++++. .++.+|.. .++.++.|+++++. ++.+| ..+. ++|+.|++++ +.++. +|.. ++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP--~~l~--------~nL~~L~Ls~-N~Lts-LP~~-l~- 240 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLP--ENLQ--------GNIKTLYANS-NQLTS-IPAT-LP- 240 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCC--hhhc--------cCCCEEECCC-Ccccc-CChh-hh-
Confidence 45667777663 55555542 23578888887753 66666 5442 3688888887 56665 4432 11
Q ss_pred hhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021 182 TLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG 261 (461)
Q Consensus 182 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 261 (461)
++|+.|++++| .+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++| .+..+|...
T Consensus 241 -----------~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l 302 (754)
T PRK15370 241 -----------DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHL 302 (754)
T ss_pred -----------ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccc
Confidence 35888888875 4455555443 47888888865 5666676553 58899999887 566666433
Q ss_pred CCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCE
Q 045021 262 LPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRH 340 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 340 (461)
. ++|+.|++++| .++.+|..+ .++|+.|++++ .+..+|. ..+++|+.|++++|. +.. .+. .+ .++|++
T Consensus 303 p--~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~-L~~-LP~-~l--p~~L~~ 371 (754)
T PRK15370 303 P--SGITHLNVQSN-SLTALPETL--PPGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQ-ITV-LPE-TL--PPTITT 371 (754)
T ss_pred h--hhHHHHHhcCC-ccccCCccc--cccceeccccCCccccCCh-hhcCcccEEECCCCC-CCc-CCh-hh--cCCcCE
Confidence 2 37888888874 455566433 36888898888 7777764 345789999999886 331 221 11 368999
Q ss_pred EEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchh----hccCCcEEEecCCCCCc
Q 045021 341 LTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIV----DLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 341 L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~----~~~~L~~L~l~~C~~l~ 406 (461)
|++++| .+..+|.. .+.+|+.|++++ +.+..+|..+. .++++..|.+.+ +.+.
T Consensus 372 LdLs~N--~Lt~LP~~---------l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~-Npls 428 (754)
T PRK15370 372 LDVSRN--ALTNLPEN---------LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY-NPFS 428 (754)
T ss_pred EECCCC--cCCCCCHh---------HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC-CCcc
Confidence 999998 77788875 445799999998 57777774443 347889999988 6654
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.34 E-value=1.8e-14 Score=131.39 Aligned_cols=293 Identities=16% Similarity=0.255 Sum_probs=160.0
Q ss_pred CCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc---CCCCCccEEecccCCCceEeccCCCcccccc
Q 045021 76 SKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV---QLPPSLKRLDISHCDNIRTLTVEDGIQSSSR 152 (461)
Q Consensus 76 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~ 152 (461)
..|+.|++.||..+..-+.......|+++++|.+.+|.++++..-. ..+++|+++++..|..++... +...+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~----Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS----LKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH----HHHHHH
Confidence 3566777777666655555444455677777777777666553222 556667777777666555422 111222
Q ss_pred cccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh--hHHhhcCCCccceeeccccccc
Q 045021 153 RYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES--IAERLDNNTSLEMISILWCENL 230 (461)
Q Consensus 153 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~ 230 (461)
+ +++|+.+++++|+.+.. -....+. +.+.+++.+...+|...+. +...-+.+.-+.++++..|..+
T Consensus 214 g--C~kL~~lNlSwc~qi~~-~gv~~~~---------rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 214 G--CRKLKYLNLSWCPQISG-NGVQALQ---------RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred h--hhhHHHhhhccCchhhc-CcchHHh---------ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 2 33677777777766554 1111111 1223355555555544432 2223344455555565555444
Q ss_pred eecc--cccCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCccccccccccCCCCCccEEEecccCCCcCCC
Q 045021 231 KFLP--SGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEED 306 (461)
Q Consensus 231 ~~~~--~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~ 306 (461)
.+.. ..-..+..|+.+..++|..+...+. ....+++|+.+-+.+|..++... |. ..+
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft-----------------~l~ 342 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FT-----------------MLG 342 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--hh-----------------hhh
Confidence 3221 2223355667777766655443222 33344566666666666544321 11 112
Q ss_pred CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC----CcccccCccccccCCCCCCCCCcceeecCCCCCCc
Q 045021 307 GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD----DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE 382 (461)
Q Consensus 307 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 382 (461)
...+.|+.+++.+|....+........+++.|+.+.+++|. .+++.+.... -....|+.+.+++|+.+.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~-------c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS-------CSLEGLEVLELDNCPLIT 415 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc-------ccccccceeeecCCCCch
Confidence 34456777777777655544333345567888888888771 1122222210 144578888888888775
Q ss_pred cc-ccchhhccCCcEEEecCCCCCcccCC
Q 045021 383 RL-SSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 383 ~i-~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
+- -+.+..+++|+.+++.+|..+++-+.
T Consensus 416 d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred HHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 42 36777888899888888888877554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=1.8e-12 Score=117.69 Aligned_cols=292 Identities=18% Similarity=0.211 Sum_probs=168.2
Q ss_pred CCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEE
Q 045021 87 DALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEI 164 (461)
Q Consensus 87 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 164 (461)
++++.+|.+.- +.-.++++.. +.++.+|+. +.+++|++|+++++..-..-| +.+.. ++++..|.+
T Consensus 56 ~GL~eVP~~LP----~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p--~AF~G------L~~l~~Lvl 122 (498)
T KOG4237|consen 56 KGLTEVPANLP----PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAP--DAFKG------LASLLSLVL 122 (498)
T ss_pred CCcccCcccCC----CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcCh--Hhhhh------hHhhhHHHh
Confidence 35666666643 4456777765 677777776 667888888888754222223 33333 445666655
Q ss_pred ecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceeccc-ccCCCCC
Q 045021 165 WDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLPS-GLHNLRQ 242 (461)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~ 242 (461)
.+-+++++ ++.+.+... ..++.|.+.-+ .+..+ ...+..+++|..|.+.++ .+..++. .+..+..
T Consensus 123 yg~NkI~~-l~k~~F~gL----------~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 123 YGNNKITD-LPKGAFGGL----------SSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAA 189 (498)
T ss_pred hcCCchhh-hhhhHhhhH----------HHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhc
Confidence 55478887 776666543 34666666653 33333 447778888888888765 5555554 6777777
Q ss_pred ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE--Eeec
Q 045021 243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL--KIER 319 (461)
Q Consensus 243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L--~l~~ 319 (461)
++++.+..++.+.. | +|+.+.= .....|..++.+....-..+.+ .+.+++...+.-.++.+ .+..
T Consensus 190 i~tlhlA~np~icd-------C-nL~wla~----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 190 IKTLHLAQNPFICD-------C-NLPWLAD----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred cchHhhhcCccccc-------c-ccchhhh----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 77777776643221 1 2222210 0111122222332222222333 33333322222122222 1111
Q ss_pred CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEE
Q 045021 320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLK 398 (461)
Q Consensus 320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~ 398 (461)
....+...+...+..+++|++|++++| .+..+.+..++ ....+++|.+.. +.++.+. ..|..+..|+.|+
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aFe------~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAFE------GAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhhc------chhhhhhhhcCc-chHHHHHHHhhhccccceeee
Confidence 111233333345778888888888887 77777766442 566888888888 6777765 3466788888888
Q ss_pred ecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021 399 LYDCPKLKYFSEKGL--PSSLLRLYIDECP 426 (461)
Q Consensus 399 l~~C~~l~~~~~~~~--~~~L~~L~i~~c~ 426 (461)
+.+ ++|+-+....+ ..+|.+|.+-.+|
T Consensus 329 L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 329 LYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ecC-CeeEEEecccccccceeeeeehccCc
Confidence 888 88888766433 4577777776544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=2.6e-12 Score=103.45 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=105.0
Q ss_pred cCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccE
Q 045021 214 DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKK 293 (461)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~ 293 (461)
..+.+.+.|.++.+ ++..+|..++.+.+|+.|++++| .++++|.....++.|+.|.+.- +.+..+|.+|+++|.|++
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence 34555666666664 55556666777777777777765 5667777666666777777654 455566667777776666
Q ss_pred EEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021 294 LRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL 373 (461)
Q Consensus 294 L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L 373 (461)
|++.. |..-+...+. .+-.+..|+-|++++| .++.+|.+ .| .+++|+.|
T Consensus 107 ldlty---------------------nnl~e~~lpg-nff~m~tlralyl~dn--dfe~lp~d-vg------~lt~lqil 155 (264)
T KOG0617|consen 107 LDLTY---------------------NNLNENSLPG-NFFYMTTLRALYLGDN--DFEILPPD-VG------KLTNLQIL 155 (264)
T ss_pred hhccc---------------------cccccccCCc-chhHHHHHHHHHhcCC--CcccCChh-hh------hhcceeEE
Confidence 66654 2211111111 1233456666777776 67777776 53 67788888
Q ss_pred ecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 374 TIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 374 ~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
.+++ +.+-++|..++.+..|++|.+++ +.++-+|.
T Consensus 156 ~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 156 SLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 8888 56777777778888888888888 77776665
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-10 Score=121.01 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=38.2
Q ss_pred CcCEEEecCCcC-cccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccE
Q 045021 54 SLREIEICRCHS-LVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKR 129 (461)
Q Consensus 54 ~L~~L~l~~~~~-l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~ 129 (461)
.|++|-+.++.. +..++. +..++.|+.|++++|..+..+|..+... .+|+.|++++ ..++.+|.. ..+..|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--i~LryL~L~~-t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--VHLRYLDLSD-TGISHLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--hhhhcccccC-CCccccchHHHHHHhhhe
Confidence 455555544321 333333 4445555555555555455555554444 4555555544 234444443 44445555
Q ss_pred EecccCCCc
Q 045021 130 LDISHCDNI 138 (461)
Q Consensus 130 L~l~~~~~~ 138 (461)
|++..+...
T Consensus 623 Lnl~~~~~l 631 (889)
T KOG4658|consen 623 LNLEVTGRL 631 (889)
T ss_pred ecccccccc
Confidence 555544433
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-11 Score=100.00 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=117.8
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (461)
.++..|.++. ..+..+|..++.+.+|+.|++.++ .+.++|.+++.+++|+.|++.-| .+..+|..++.+|.|+.|++
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 4588888888 567777778888999999999975 78999999999999999999875 77889999999999999999
Q ss_pred ccCc-cccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc
Q 045021 273 YRCE-RLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD 349 (461)
Q Consensus 273 ~~c~-~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 349 (461)
..++ +-..+|..|..++.|+.|.+++ +.+.+|.. +...+|+.|.+++|..++-+- .++.+..|++|.+.+| +
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrelhiqgn--r 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLRELHIQGN--R 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHHhcccc--e
Confidence 8754 3346787788888888888888 66666654 556666667666666433211 2455566666666665 5
Q ss_pred ccccCcc
Q 045021 350 MVSFPPE 356 (461)
Q Consensus 350 ~~~i~~~ 356 (461)
+..+|.+
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 5555544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=8.1e-11 Score=111.46 Aligned_cols=88 Identities=24% Similarity=0.134 Sum_probs=39.5
Q ss_pred HhhcCCCccceeeccccccceecccccCCC---CCccEEEecCCCCCc----cCCCCCCCC-CCcceEeeccCccc----
Q 045021 211 ERLDNNTSLEMISILWCENLKFLPSGLHNL---RQLQEIQLWGCENLV----SFPEGGLPC-AKLSKLGIYRCERL---- 278 (461)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~l~----~l~~~~~~~-~~L~~L~l~~c~~~---- 278 (461)
..+..+++|++|++++|......+..+..+ ++|++|++++|.... .+......+ ++|+.|++++|...
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 344556666666666654332222222222 336666666653211 011111112 45666666665422
Q ss_pred cccccccCCCCCccEEEecc
Q 045021 279 EALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 279 ~~~~~~~~~l~~L~~L~l~~ 298 (461)
..++..+..+++|++|++++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 155 EALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHHHHhCCCcCEEECcC
Confidence 12222344455566666555
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.6e-10 Score=109.49 Aligned_cols=254 Identities=20% Similarity=0.121 Sum_probs=147.9
Q ss_pred CccEEEEecCCc----hhhhHHhhcCCCccceeeccccccc------eecccccCCCCCccEEEecCCCCCccCCC----
Q 045021 194 SLKSLNVWSCSK----LESIAERLDNNTSLEMISILWCENL------KFLPSGLHNLRQLQEIQLWGCENLVSFPE---- 259 (461)
Q Consensus 194 ~L~~L~l~~~~~----l~~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~l~~---- 259 (461)
+|+.+++.++.. ...++..+...+++++++++++..- ..++..+..+++|+.|++++|......+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477777777542 1234445666777888888765322 22344566788999999999854322222
Q ss_pred CCCCCCCcceEeeccCcccc----ccccccCCC-CCccEEEecc-cCCC-----cCC-CCCCCCcceEEeecCchhhHHh
Q 045021 260 GGLPCAKLSKLGIYRCERLE----ALPKGLHNL-KSLKKLRIGG-KLPS-----LEE-DGLPTNLHFLKIERNMEIWKSM 327 (461)
Q Consensus 260 ~~~~~~~L~~L~l~~c~~~~----~~~~~~~~l-~~L~~L~l~~-~~~~-----l~~-~~~~~~L~~L~l~~~~~l~~~~ 327 (461)
.... ++|++|++++|.-.. .+...+..+ ++|+.|++++ .+.. +.. ...+++|++|++++|..-....
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 1112 469999999875331 222345566 8999999998 4441 111 1334689999999987332111
Q ss_pred h--hhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cchhh----ccCCcEEEe
Q 045021 328 I--ERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSIVD----LQNLKYLKL 399 (461)
Q Consensus 328 ~--~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~----~~~L~~L~l 399 (461)
. ...+..+++|++|++++| .+.......+. ......++|+.|++++| .+.+.. ..... .+.|++|++
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~--~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNN--GLTDEGASALA--ETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCC--ccChHHHHHHH--HHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEc
Confidence 1 123455679999999998 44322111000 00124578999999996 454321 11122 479999999
Q ss_pred cCCCCCcccC-----C-CCCcccccEeeccCCchhHHhhcccCccccccc-cccceEEEcccE
Q 045021 400 YDCPKLKYFS-----E-KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLL-THIPRVRIHLPV 455 (461)
Q Consensus 400 ~~C~~l~~~~-----~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 455 (461)
.+| .++... . ....++|+++++++|..-.+.+.. -...|... .++..+.+.++.
T Consensus 258 ~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 258 SCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL-LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence 995 554211 1 011368999999998655442221 12234333 466666665543
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-09 Score=114.67 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL 107 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 107 (461)
|.|++|++++|..+.++|..++.+-+||+|+++++ .+..+|. ++.+.+|.+|++..+..+..++...... ++|+.|
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L 647 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVL 647 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhc--ccccEE
Confidence 77777777766666677777777777777777774 5566666 6667777777777655555554333333 667777
Q ss_pred EeeCC
Q 045021 108 KIWSC 112 (461)
Q Consensus 108 ~l~~~ 112 (461)
.+...
T Consensus 648 ~l~~s 652 (889)
T KOG4658|consen 648 RLPRS 652 (889)
T ss_pred Eeecc
Confidence 66553
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.9e-10 Score=101.42 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=105.9
Q ss_pred hcCCCccceeeccccc--cceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCccc-cccccccCC
Q 045021 213 LDNNTSLEMISILWCE--NLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERL-EALPKGLHN 287 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~-~~~~~~~~~ 287 (461)
...+++++.|+++.+- ....+......+++|+.|+++.|. +..... ....+++|+.|.+++|.-- .++......
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 3445666666666541 112222333456677777776652 221111 1123457777777777532 233334456
Q ss_pred CCCccEEEecc-cCCCc--CCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021 288 LKSLKKLRIGG-KLPSL--EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL 364 (461)
Q Consensus 288 l~~L~~L~l~~-~~~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~ 364 (461)
+|+|+.|++.. ....+ .....+..|++|+|++|..++.... .....++.|+.|.++.| ++.++..-..+-.+..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKVGTLPGLNQLNLSST--GIASIAEPDVESLDKT 297 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-cccccccchhhhhcccc--CcchhcCCCccchhhh
Confidence 77777777776 22111 1224556788888888886653322 24677888888888887 6665543212222223
Q ss_pred CCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCc
Q 045021 365 PLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 365 ~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~ 406 (461)
..+++|+.|.+.. +.+.+++ ..+..+++|+.|.+.. +.+.
T Consensus 298 ~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~-n~ln 339 (505)
T KOG3207|consen 298 HTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL-NYLN 339 (505)
T ss_pred cccccceeeeccc-Cccccccccchhhccchhhhhhccc-cccc
Confidence 4667888888888 5666554 3455667777777654 4444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.2e-08 Score=85.85 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=15.1
Q ss_pred CCCcceeecCCCCCCcccccch-hhccCCcEEEecCCCCCcccCCC-C--CcccccEeeccCCc
Q 045021 367 PASLASLTIGDFPNLERLSSSI-VDLQNLKYLKLYDCPKLKYFSEK-G--LPSSLLRLYIDECP 426 (461)
Q Consensus 367 ~~~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L~l~~C~~l~~~~~~-~--~~~~L~~L~i~~c~ 426 (461)
++.|++|++++ +.++.+...+ ..+|+|++|++++ ++|+++..- . .+++|++|++.++|
T Consensus 63 L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 63 LPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 34444444444 3444443222 2344555555544 444443331 1 13445555555444
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-10 Score=102.41 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=122.8
Q ss_pred CcCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc---CCCCCc
Q 045021 54 SLREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV---QLPPSL 127 (461)
Q Consensus 54 ~L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L 127 (461)
.||+|||++. .++ .+-. +..|.+||.|++.|..--+.+...+... .+|+.|+++.|..++....- ..++.|
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhH
Confidence 5899999884 333 2222 5668899999998876333444444444 88999999999888876554 677889
Q ss_pred cEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh
Q 045021 128 KRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE 207 (461)
Q Consensus 128 ~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 207 (461)
..|+++.|...++.- ...+. .-.++|+.|+++||.+.- ....+ -...+.||+|..|++++|..+.
T Consensus 263 ~~LNlsWc~l~~~~V-tv~V~-----hise~l~~LNlsG~rrnl---~~sh~------~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKV-TVAVA-----HISETLTQLNLSGYRRNL---QKSHL------STLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred hhcCchHhhccchhh-hHHHh-----hhchhhhhhhhhhhHhhh---hhhHH------HHHHHhCCceeeeccccccccC
Confidence 999999887444321 01111 114578889998865431 11111 1224667999999999987776
Q ss_pred h-hHHhhcCCCccceeeccccccce-ecccccCCCCCccEEEecCCC
Q 045021 208 S-IAERLDNNTSLEMISILWCENLK-FLPSGLHNLRQLQEIQLWGCE 252 (461)
Q Consensus 208 ~-~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 252 (461)
. ....+..++.|++|+++.|+.+. +.--.+...|+|.+|++.+|-
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 5 34478889999999999997662 112235677999999999874
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.7e-09 Score=95.65 Aligned_cols=175 Identities=20% Similarity=0.166 Sum_probs=111.0
Q ss_pred CCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCcccccc---ccccCCCCCccEEEecc-cCCCcCC---CCC
Q 045021 238 HNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEAL---PKGLHNLKSLKKLRIGG-KLPSLEE---DGL 308 (461)
Q Consensus 238 ~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~---~~~~~~l~~L~~L~l~~-~~~~l~~---~~~ 308 (461)
.++++|+.+.+.++ .+..... ....|++++.|+++.+- +..| ......+|+|+.|.++. .+...-. ...
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 34567777777665 3333332 33456778888887742 2222 22456788888888887 3332221 135
Q ss_pred CCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC-CcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--
Q 045021 309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD-DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-- 385 (461)
Q Consensus 309 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-- 385 (461)
.+.|+.|.+++|. +......+.+..+|+|+.|++..|. ..+...+. ..+..|++|++++. .+.+.+
T Consensus 196 l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---------~i~~~L~~LdLs~N-~li~~~~~ 264 (505)
T KOG3207|consen 196 LSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST---------KILQTLQELDLSNN-NLIDFDQG 264 (505)
T ss_pred hhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh---------hhhhHHhhccccCC-cccccccc
Confidence 6788999999987 4334444567788999999999871 11112222 36678999999984 454444
Q ss_pred cchhhccCCcEEEecCCCCCcccCC--C------CCcccccEeeccCCc
Q 045021 386 SSIVDLQNLKYLKLYDCPKLKYFSE--K------GLPSSLLRLYIDECP 426 (461)
Q Consensus 386 ~~~~~~~~L~~L~l~~C~~l~~~~~--~------~~~~~L~~L~i~~c~ 426 (461)
.....++.|+.|.++. ..++++-. . ...++|++|++..++
T Consensus 265 ~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCc
Confidence 4567788888888888 56666522 2 236788888888775
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=1.8e-09 Score=102.84 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=130.5
Q ss_pred cEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccC
Q 045021 196 KSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRC 275 (461)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 275 (461)
...++.. +.+..+|..+..+..|+.+.+..+ .+..+|..+.++..|.+++++.| .+..+|...+.+ -|+.|.+++
T Consensus 78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSR-NRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhccc-cccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec-
Confidence 3445555 355566767777777888887764 56777888888888999999887 667777766666 588887776
Q ss_pred ccccccccccCCCCCccEEEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc
Q 045021 276 ERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP 355 (461)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~ 355 (461)
++++.+|..++..+.| ..|+++.|...+... .+..+.+|+.|.+..| ++..+|+
T Consensus 153 Nkl~~lp~~ig~~~tl---------------------~~ld~s~nei~slps---ql~~l~slr~l~vrRn--~l~~lp~ 206 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTL---------------------AHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRN--HLEDLPE 206 (722)
T ss_pred CccccCCcccccchhH---------------------HHhhhhhhhhhhchH---HhhhHHHHHHHHHhhh--hhhhCCH
Confidence 5677777766655544 445555555332111 4666778888888876 7778887
Q ss_pred cccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC----CCCcccccEeeccCC
Q 045021 356 EDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE----KGLPSSLLRLYIDEC 425 (461)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~----~~~~~~L~~L~i~~c 425 (461)
+ . .--.|.+||++. +++..||..|.++..|++|.+++ |-+++-|+ .|...-.++|+++-|
T Consensus 207 E-l-------~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 207 E-L-------CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred H-H-------hCCceeeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 6 2 122588888885 78888888888888888888876 77777554 344455666777666
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=5.3e-08 Score=81.89 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=8.9
Q ss_pred CcceEeeccCccccccccccC-CCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCc
Q 045021 266 KLSKLGIYRCERLEALPKGLH-NLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNM 321 (461)
Q Consensus 266 ~L~~L~l~~c~~~~~~~~~~~-~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~ 321 (461)
.+++|+++++ .++.+. .++ .+.+|+.|++++ .+..++....++.|++|++++|.
T Consensus 20 ~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 20 KLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS-
T ss_pred cccccccccc-cccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC
Confidence 4555555553 333332 232 344555555555 44444433344444444444444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=3.1e-08 Score=87.37 Aligned_cols=131 Identities=15% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021 264 CAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT 342 (461)
Q Consensus 264 ~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 342 (461)
+..|+++++++ +.++.+.+++.-.|.++.|+++. .+..+......++|+.||+++|. +.... . .-..+-++++|.
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~-G-wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAECV-G-WHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch-hHhhh-h-hHhhhcCEeeee
Confidence 34566666666 34555555555566666666666 55555545555666666666665 22111 1 123455666666
Q ss_pred EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCcccCC
Q 045021 343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
++.| .++++..- ..+-+|..||+++ ++++.+. .+++++|-|+++.+.+ +.++.++.
T Consensus 359 La~N--~iE~LSGL--------~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQN--KIETLSGL--------RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD 416 (490)
T ss_pred hhhh--hHhhhhhh--------Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence 6665 45554442 2444666777766 4555443 4566667777777766 55555444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=3.3e-08 Score=87.20 Aligned_cols=125 Identities=19% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCC
Q 045021 286 HNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTT 363 (461)
Q Consensus 286 ~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~ 363 (461)
...+.|+++++++ .++.+++. ...|.++.|+++.|.... .. .++.+++|.+|++++| .+..+.. |-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~--nLa~L~~L~~LDLS~N--~Ls~~~G--wh---- 348 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQ--NLAELPQLQLLDLSGN--LLAECVG--WH---- 348 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--eh--hhhhcccceEeecccc--hhHhhhh--hH----
Confidence 4567899999999 77777766 677899999999988332 11 3778899999999997 5665554 21
Q ss_pred CCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC---CCcccccEeeccCCc
Q 045021 364 LPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLYIDECP 426 (461)
Q Consensus 364 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~i~~c~ 426 (461)
..+.++++|.+++ +.++++ .+++.+-+|..|++++ ++|+.+.+. +.+|-|+.+.+.++|
T Consensus 349 -~KLGNIKtL~La~-N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 -LKLGNIKTLKLAQ-NKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -hhhcCEeeeehhh-hhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 2466899999999 678888 7889999999999999 888887552 346788888888876
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.1e-09 Score=92.73 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=110.0
Q ss_pred CccEEEEecCCchh--hhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCcce
Q 045021 194 SLKSLNVWSCSKLE--SIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSK 269 (461)
Q Consensus 194 ~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~ 269 (461)
.|+.+++++. .++ .+...+..|.+|+.|++.+..--..+...++.-.+|+.++++.|.++.+... ....|+.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666652 222 2233556667777777766533333344455566777777777766654332 3344566777
Q ss_pred EeeccCcccccccc-cc-CCCCCccEEEecc---cC--CCcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021 270 LGIYRCERLEALPK-GL-HNLKSLKKLRIGG---KL--PSLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL 341 (461)
Q Consensus 270 L~l~~c~~~~~~~~-~~-~~l~~L~~L~l~~---~~--~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 341 (461)
|+++.|...+..-. .+ .--++|+.|++++ .+ ..+.. ...+|+|.+||+++|..+++.... .+..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheee
Confidence 77777654432211 11 1235677777777 11 11211 256788999999999888764332 46788999999
Q ss_pred EEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcE
Q 045021 342 TIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKY 396 (461)
Q Consensus 342 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~ 396 (461)
.++.|+.-.-..-.+ + ...|+|.+|++.+|-.-....-....+++|+.
T Consensus 344 SlsRCY~i~p~~~~~-l------~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLE-L------NSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ehhhhcCCChHHeee-e------ccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 999983211111111 2 24568999999998543333222334555543
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=6.8e-07 Score=84.50 Aligned_cols=134 Identities=26% Similarity=0.470 Sum_probs=89.5
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
+++++|++++| .+..+|. +. ++|++|.+++|..+..+|. ..+.+|++|++++|..+..+| ++|+.|+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~-LP--~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV-LP--NELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP--------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCC-CCcccCC-CC--CCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc--------cccceEE
Confidence 99999999998 6788873 32 3799999999998887775 225799999999997787776 4578888
Q ss_pred eeCCCCCccccccCCCCCccEEecccCCCce--EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIR--TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL 186 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 186 (461)
+.+ +....+. ..+++|+.|.+.+..... .++ ..+ -++|+.|.+.+|..+. .| ..+|.
T Consensus 119 L~~-n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp--~~L--------PsSLk~L~Is~c~~i~--LP-~~LP~----- 177 (426)
T PRK15386 119 IKG-SATDSIK--NVPNGLTSLSINSYNPENQARID--NLI--------SPSLKTLSLTGCSNII--LP-EKLPE----- 177 (426)
T ss_pred eCC-CCCcccc--cCcchHhheeccccccccccccc--ccc--------CCcccEEEecCCCccc--Cc-ccccc-----
Confidence 764 3322221 233678888875432111 111 111 1369999999877542 23 23444
Q ss_pred ccCCCCCCccEEEEecC
Q 045021 187 EVGNQPPSLKSLNVWSC 203 (461)
Q Consensus 187 ~~~~~~~~L~~L~l~~~ 203 (461)
+|+.|.+..+
T Consensus 178 -------SLk~L~ls~n 187 (426)
T PRK15386 178 -------SLQSITLHIE 187 (426)
T ss_pred -------cCcEEEeccc
Confidence 4888888663
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=1.3e-06 Score=82.51 Aligned_cols=136 Identities=29% Similarity=0.497 Sum_probs=72.6
Q ss_pred cCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccE
Q 045021 214 DNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKK 293 (461)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~ 293 (461)
..+.+++.|++++| .+..+|. + .++|+.|.+++|..+..+|... .++|++|++++|..+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 33567777777766 5555552 2 2457777777776666665432 23677777777766666553 4555
Q ss_pred EEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021 294 LRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA 371 (461)
Q Consensus 294 L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~ 371 (461)
|++.. ....+ ...|++|+.|.+.++........ -..+ ++|++|.+.+| ....+|.. .|.+|+
T Consensus 117 L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c--~~i~LP~~---------LP~SLk 180 (426)
T PRK15386 117 LEIKGSATDSI--KNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGC--SNIILPEK---------LPESLQ 180 (426)
T ss_pred EEeCCCCCccc--ccCcchHhheecccccccccccc---ccccCCcccEEEecCC--CcccCccc---------ccccCc
Confidence 55554 32222 23445666666643321100000 0112 36677777665 32233432 455666
Q ss_pred eeecCC
Q 045021 372 SLTIGD 377 (461)
Q Consensus 372 ~L~l~~ 377 (461)
.|+++.
T Consensus 181 ~L~ls~ 186 (426)
T PRK15386 181 SITLHI 186 (426)
T ss_pred EEEecc
Confidence 666655
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=5.7e-07 Score=87.79 Aligned_cols=178 Identities=24% Similarity=0.299 Sum_probs=121.2
Q ss_pred hcCCCccceeeccccccceecccccCCCC-CccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021 213 LDNNTSLEMISILWCENLKFLPSGLHNLR-QLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL 291 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L 291 (461)
+...+.++.|++.++ .+.+++....... +|+.|+++++ .+..++.....+++|+.|++++| .+..+|...+..++|
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 344467777777764 5566666666664 8888888876 55666545555668888888874 566666655578888
Q ss_pred cEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCC
Q 045021 292 KKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPAS 369 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 369 (461)
+.|++++ .+..++.. ..+..|+++.++++....... .+..+.++..+.+.++ .+..++.. . ..+++
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n--~~~~~~~~-~------~~l~~ 256 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNN--KLEDLPES-I------GNLSN 256 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCc--eeeeccch-h------ccccc
Confidence 8888888 77777766 455568888888885233222 3566677777776665 55554333 3 25667
Q ss_pred cceeecCCCCCCcccccchhhccCCcEEEecCCCCCccc
Q 045021 370 LASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYF 408 (461)
Q Consensus 370 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~ 408 (461)
++.|++++ +.+.+++. ++...+++.|++.+ +.+...
T Consensus 257 l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~-n~~~~~ 292 (394)
T COG4886 257 LETLDLSN-NQISSISS-LGSLTNLRELDLSG-NSLSNA 292 (394)
T ss_pred cceecccc-cccccccc-ccccCccCEEeccC-cccccc
Confidence 88888888 57777754 77888888888888 555433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=5.8e-06 Score=56.82 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecC
Q 045021 29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECD 87 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~ 87 (461)
|+|++|+++++ .+..+| ..|..+++|++|++++| .+..+++ +..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56778888874 566665 46777888888888865 5666665 6677788888777754
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=4.3e-06 Score=81.68 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=41.9
Q ss_pred CCCCCCccEEEEeecCCccccCcccccCCCC-cccEEEeeCCCCCcccc-ccCCCCCccEEecccCCCceEeccCCCccc
Q 045021 72 VALPSKLKKIEIRECDALKSLPEAWMCGTNS-SLEILKIWSCHSLPYIA-RVQLPPSLKRLDISHCDNIRTLTVEDGIQS 149 (461)
Q Consensus 72 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 149 (461)
+.....++.|++.+.. +..++...... . +|+.|++++ +.+..++ ....+++|+.|+++++. +.+++ .....
T Consensus 112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~--~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~--~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-ITDIPPLIGLL--KSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLP--KLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-cccCccccccc--hhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhh--hhhhh
Confidence 3444556666665533 55555443332 2 566666655 3444442 33555556666655543 34444 22211
Q ss_pred ccccccccCccEEEEecCCCCee
Q 045021 150 SSRRYTSYLLEKLEIWDCPSLTC 172 (461)
Q Consensus 150 ~~~~~~~~~L~~L~l~~~~~l~~ 172 (461)
.++|+.|++++ +.+++
T Consensus 185 ------~~~L~~L~ls~-N~i~~ 200 (394)
T COG4886 185 ------LSNLNNLDLSG-NKISD 200 (394)
T ss_pred ------hhhhhheeccC-Ccccc
Confidence 33455555555 44444
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.05 E-value=2.2e-07 Score=93.27 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=76.2
Q ss_pred CCccEEEecCCcCCcc---ccccCCCCCCcCEEEecCCcCccc--ccC-CCCCCCccEEEEeec-CCccccC--cccccC
Q 045021 29 CRLEYLILRYCKGLVK---LPQSSLSLSSLREIEICRCHSLVS--FPE-VALPSKLKKIEIREC-DALKSLP--EAWMCG 99 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~---l~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~l~~L~~L~l~~~-~~l~~~~--~~~~~~ 99 (461)
..++.++...+..... .-.....+++|+.|.+.+|..+.. +.. ...+++|+.|++++| ......+ ......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 4555666655432111 111233467888888888766664 222 556788888888762 2222222 111222
Q ss_pred CCCcccEEEeeCCCCCcccccc---CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCe
Q 045021 100 TNSSLEILKIWSCHSLPYIARV---QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLT 171 (461)
Q Consensus 100 ~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 171 (461)
.+++|+++++++|..+++.... ..+++|+.|.+.+|..+++ .++......++ +|++|++++|..++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~----~gl~~i~~~~~--~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD----EGLVSIAERCP--SLRELDLSGCHGLT 309 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch----hHHHHHHHhcC--cccEEeeecCccch
Confidence 3477888888887766554332 3467777777777765433 33433333333 67777777766653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=9.4e-06 Score=55.76 Aligned_cols=57 Identities=25% Similarity=0.507 Sum_probs=32.2
Q ss_pred CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 336 SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 336 ~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
|+|++|++++| .+..++.+.+ ..+++|++|++++ +.++.++ ..+..+++|++|++++
T Consensus 1 p~L~~L~l~~n--~l~~i~~~~f------~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTEIPPDSF------SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSS--TESEECTTTT------TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred CcCcEEECCCC--CCCccCHHHH------cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 35566666665 5556655433 2455666666665 3555554 3455666666666665
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.98 E-value=8.7e-07 Score=80.11 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=47.2
Q ss_pred CCcceEEeecCchhhHH--hhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc----
Q 045021 310 TNLHFLKIERNMEIWKS--MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER---- 383 (461)
Q Consensus 310 ~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---- 383 (461)
++|+.+.++.|..-... .....+.++++|+.|++.+| .+..-.. ..+......+++|+.|.+++|. ++.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs--~~LakaL~s~~~L~El~l~dcl-l~~~Ga~ 259 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGS--VALAKALSSWPHLRELNLGDCL-LENEGAI 259 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHH--HHHHHHhcccchheeecccccc-cccccHH
Confidence 45555555555422111 11223555666666666665 1111000 0011111234456666666663 221
Q ss_pred -cccc-hhhccCCcEEEecCCCCCcccCC-------CCCcccccEeeccCCc
Q 045021 384 -LSSS-IVDLQNLKYLKLYDCPKLKYFSE-------KGLPSSLLRLYIDECP 426 (461)
Q Consensus 384 -i~~~-~~~~~~L~~L~l~~C~~l~~~~~-------~~~~~~L~~L~i~~c~ 426 (461)
+... -+..|+|+.|.+.+ +.|+.-.. .. -+.|+.|++++|.
T Consensus 260 a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAG-NEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 1111 12356666666666 44444111 11 3566666666653
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=6.2e-07 Score=90.07 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=56.5
Q ss_pred CcceEEeecCchhh-HHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCC-cccccch
Q 045021 311 NLHFLKIERNMEIW-KSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL-ERLSSSI 388 (461)
Q Consensus 311 ~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~i~~~~ 388 (461)
.++.+.+.++.... +.........+++++.+.+..+ +... ....+.+.+|+.+ ..+....
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~--~~~~----------------~~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC--GISD----------------LGLELSLRGCPNLTESLELRL 397 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh--hccC----------------cchHHHhcCCcccchHHHHHh
Confidence 44444444444332 2333334556666666666665 1111 1114556777776 3433223
Q ss_pred hhccCCcEEEecCCCCCcccCCCCC---cccccEeeccCCchhHHhh
Q 045021 389 VDLQNLKYLKLYDCPKLKYFSEKGL---PSSLLRLYIDECPLIEEKC 432 (461)
Q Consensus 389 ~~~~~L~~L~l~~C~~l~~~~~~~~---~~~L~~L~i~~c~~l~~~~ 432 (461)
..+..++.|.+..|...+....... ...++.+++.+|+.+....
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3344488889988887776433211 4567888888887765554
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=2.1e-06 Score=88.03 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=101.9
Q ss_pred CCccEEEecCCCCCccC--CCCCCCCCCcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEE
Q 045021 241 RQLQEIQLWGCENLVSF--PEGGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLK 316 (461)
Q Consensus 241 ~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~ 316 (461)
.+|++|++++...+..- ...+.-+|+|++|.+.+-... .++.....++|+|..||+++ ++..+...+..++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 57899999875433211 124455789999999874322 22334567889999999999 888887778888999888
Q ss_pred eecCchhhHHhhhhcccCCCCcCEEEEecCCCcccc--cCccccccCCCCCCCCCcceeecCCCCCCc-cc-ccchhhcc
Q 045021 317 IERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVS--FPPEDRRLGTTLPLPASLASLTIGDFPNLE-RL-SSSIVDLQ 392 (461)
Q Consensus 317 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i-~~~~~~~~ 392 (461)
+++-. +.....-..+-.+++|+.|+++.. ..... +... +.+....+|.||.||.++ ..+. ++ ...+...|
T Consensus 202 mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~q---Ylec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 202 MRNLE-FESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQ---YLECGMVLPELRFLDCSG-TDINEEILEELLNSHP 275 (699)
T ss_pred ccCCC-CCchhhHHHHhcccCCCeeecccc-ccccchHHHHH---HHHhcccCccccEEecCC-cchhHHHHHHHHHhCc
Confidence 87755 222222234667999999999985 22111 1110 112225678999999998 4443 22 24455677
Q ss_pred CCcEEEecCCCCCc
Q 045021 393 NLKYLKLYDCPKLK 406 (461)
Q Consensus 393 ~L~~L~l~~C~~l~ 406 (461)
+|+.+.+-+|....
T Consensus 276 ~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 276 NLQQIAALDCLALS 289 (699)
T ss_pred cHhhhhhhhhhccc
Confidence 88887777654433
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=1.3e-06 Score=78.96 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=87.4
Q ss_pred CCCCCcceEEeecCchhhHHh--hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc-
Q 045021 307 GLPTNLHFLKIERNMEIWKSM--IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER- 383 (461)
Q Consensus 307 ~~~~~L~~L~l~~~~~l~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 383 (461)
..++.|+++...+|+--.... ....++..+.|+.+.++.| ++..=... .........++|+.||+.++ -.+.
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN--~I~~eG~~--al~eal~~~~~LevLdl~DN-tft~e 228 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN--GIRPEGVT--ALAEALEHCPHLEVLDLRDN-TFTLE 228 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc--cccCchhH--HHHHHHHhCCcceeeecccc-hhhhH
Confidence 456789999998887433222 1234667799999999997 44321110 00011146789999999994 4432
Q ss_pred ----cccchhhccCCcEEEecCCCCCcccCC-------CCCcccccEeeccCCchhHHhhcccCccccccccccceEEEc
Q 045021 384 ----LSSSIVDLQNLKYLKLYDCPKLKYFSE-------KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIH 452 (461)
Q Consensus 384 ----i~~~~~~~~~L~~L~l~~C~~l~~~~~-------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 452 (461)
+...+..+++|+.|.+.+|.- +.-.. ....++|+++++.+|....+....... ..-.-+++.-++++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~-~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA-CMAEKPDLEKLNLN 306 (382)
T ss_pred HHHHHHHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH-HHhcchhhHHhcCC
Confidence 225567788999999999853 33221 122689999999999754433221100 11114466667777
Q ss_pred ccEEe
Q 045021 453 LPVVF 457 (461)
Q Consensus 453 ~~~~~ 457 (461)
+|++.
T Consensus 307 gN~l~ 311 (382)
T KOG1909|consen 307 GNRLG 311 (382)
T ss_pred ccccc
Confidence 77763
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.9e-06 Score=83.16 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=91.2
Q ss_pred hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021 212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL 291 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L 291 (461)
.+..+.+|+.+++.++ .+..+...+..+++|++|++++| .+..+..... ++.|+.|++.+| .+..+. .+..+++|
T Consensus 90 ~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~-l~~L~~L~l~~N-~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLST-LTLLKELNLSGN-LISDIS-GLESLKSL 164 (414)
T ss_pred ccccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhh-ccchhhheeccC-cchhcc-CCccchhh
Confidence 4556667777777664 44444333556677777777776 4444443222 224777777763 344443 35556677
Q ss_pred cEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021 292 KKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA 368 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (461)
+.+++++ .+..++. .....+++.+.+.++...... .+..+..+..+++..+ .+..+..- ...+
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n--~i~~~~~l--------~~~~ 230 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDN--KISKLEGL--------NELV 230 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhcccc--cceeccCc--------ccch
Confidence 7777776 5555555 245556666666666522111 1222223333344433 33222221 1111
Q ss_pred --CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCccc
Q 045021 369 --SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYF 408 (461)
Q Consensus 369 --~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~ 408 (461)
+|+.+++.+ +.+..++..+..+.++..+++.+ +++..+
T Consensus 231 ~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~ 270 (414)
T KOG0531|consen 231 MLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNL 270 (414)
T ss_pred hHHHHHHhccc-Cccccccccccccccccccchhh-cccccc
Confidence 266666666 45555444555666666666665 554443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.1e-05 Score=69.79 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=112.2
Q ss_pred cCCCccceeeccccccc--eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcc-ccccccccCCCCC
Q 045021 214 DNNTSLEMISILWCENL--KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCER-LEALPKGLHNLKS 290 (461)
Q Consensus 214 ~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~l~~ 290 (461)
..++.++.+++.+|... .++...+.++|.|+.|+++.|+--..+.....+..+|++|-+.|..- .+.....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34667788888776322 34455567788888888887743333333445667888888876321 1222234567788
Q ss_pred ccEEEecc-cCCCcC--C---CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021 291 LKKLRIGG-KLPSLE--E---DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL 364 (461)
Q Consensus 291 L~~L~l~~-~~~~l~--~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~ 364 (461)
++.|+++. ....+- . ..+.+.+++++..+|..............||++..+-+..| .+++...+..+
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~--PlK~~s~ek~s----- 220 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG--PLKTESSEKGS----- 220 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC--cccchhhcccC-----
Confidence 88888877 222221 1 13446788888888874443333334456899999988887 55555443111
Q ss_pred CCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCC
Q 045021 365 PLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCP 403 (461)
Q Consensus 365 ~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~ 403 (461)
...|.+--|.++. +++.++. ..+.+|++|..|.+.+-+
T Consensus 221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 2345666666766 5666654 557788888888888733
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=5.9e-05 Score=47.53 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE 71 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~ 71 (461)
++|++|++++ +++.++|..+++|++|++|++++| .+.+++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4567777776 345666666677777777777776 4555543
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.2e-05 Score=82.66 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccc-ccccccCCCCCccE
Q 045021 216 NTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLE-ALPKGLHNLKSLKK 293 (461)
Q Consensus 216 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~l~~L~~ 293 (461)
+|.|++|.+.+-.-. .++.....++++|..|||+++ ++..+ .+...+++|+.|.+.+-..-. .--..+.++++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555442111 122233344566666666654 34444 233344556555555422111 00013456777777
Q ss_pred EEecc--cC-------CCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEec
Q 045021 294 LRIGG--KL-------PSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEG 345 (461)
Q Consensus 294 L~l~~--~~-------~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 345 (461)
||+|. .. ..++....+|.|+.||.++.. +...........-|+|+.+...+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhhhh
Confidence 77776 11 122334456788888888776 44444444455566666665443
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.58 E-value=2.7e-06 Score=81.77 Aligned_cols=99 Identities=24% Similarity=0.354 Sum_probs=65.5
Q ss_pred ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeecc
Q 045021 195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYR 274 (461)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 274 (461)
|+.|-+.+ +.++.+|..++....|..|+.+.| .+..+|..++++.+|+.|.+..| .+..+|.....+ .|.+|+++.
T Consensus 145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeeccc
Confidence 66666666 466666666666677777777765 55566666777777777777765 555666644444 566777663
Q ss_pred CccccccccccCCCCCccEEEecc
Q 045021 275 CERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 275 c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
+++..+|-.|.+|+.|++|-+.+
T Consensus 221 -Nkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 221 -NKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred -Cceeecchhhhhhhhheeeeecc
Confidence 56666777777777777777766
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=0.00014 Score=45.87 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=29.2
Q ss_pred CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
++|++|++++ +.+++++..+.++++|+.|++++ +.+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 4678888888 47778876678888888888888 56776643
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=1.5e-05 Score=78.08 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=120.9
Q ss_pred CCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021 215 NNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294 (461)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L 294 (461)
.+..++.+.+..+ .+..+-..+..+.+|+.+++.++ .+..+......+++|++|+++++ .++.+. .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccc-cccccc-chhhccchhhh
Confidence 3455566665553 33333344667788999999887 55555553445678999999884 555553 36777778888
Q ss_pred Eecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021 295 RIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL 373 (461)
Q Consensus 295 ~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L 373 (461)
++++ .+..+.....+++|+.+++++|.... ..... ...+.+++.+++.++ .+..+... .....+..+
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~-~~~~~~l~~l~l~~n--~i~~i~~~--------~~~~~l~~~ 213 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVD-IENDE-LSELISLEELDLGGN--SIREIEGL--------DLLKKLVLL 213 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhh-hhhhh-hhhccchHHHhccCC--chhcccch--------HHHHHHHHh
Confidence 8888 77777776667888888888887322 11101 467788888888886 55554432 123344444
Q ss_pred ecCCCCCCcccccchhhccC--CcEEEecCCCCCcccC-CCCCcccccEeeccCC
Q 045021 374 TIGDFPNLERLSSSIVDLQN--LKYLKLYDCPKLKYFS-EKGLPSSLLRLYIDEC 425 (461)
Q Consensus 374 ~l~~~~~l~~i~~~~~~~~~--L~~L~l~~C~~l~~~~-~~~~~~~L~~L~i~~c 425 (461)
++.. +.+..+ ..+..... |+.+++.+ +.+...+ .......+..|++.+.
T Consensus 214 ~l~~-n~i~~~-~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 214 SLLD-NKISKL-EGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred hccc-ccceec-cCcccchhHHHHHHhccc-Cccccccccccccccccccchhhc
Confidence 5555 444444 33333444 88889988 7777763 2223466666666643
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=59.92 Aligned_cols=104 Identities=14% Similarity=0.220 Sum_probs=77.3
Q ss_pred CCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--c
Q 045021 309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--S 386 (461)
Q Consensus 309 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~ 386 (461)
..+...+|+.+|.... ...+.+++.|.+|.+.+| ++..|... .+ ..+++|+.|.+.+ +.+..+. .
T Consensus 41 ~d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nN--rIt~I~p~-L~-----~~~p~l~~L~Ltn-Nsi~~l~dl~ 107 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNN--RITRIDPD-LD-----TFLPNLKTLILTN-NSIQELGDLD 107 (233)
T ss_pred ccccceecccccchhh----cccCCCccccceEEecCC--cceeeccc-hh-----hhccccceEEecC-cchhhhhhcc
Confidence 3466778888877322 224778889999999987 88888776 43 4677899999998 5666554 5
Q ss_pred chhhccCCcEEEecCCCCCcccCCCCC-----cccccEeeccCCc
Q 045021 387 SIVDLQNLKYLKLYDCPKLKYFSEKGL-----PSSLLRLYIDECP 426 (461)
Q Consensus 387 ~~~~~~~L~~L~l~~C~~l~~~~~~~~-----~~~L~~L~i~~c~ 426 (461)
.+..||+|++|.+-+ +.++....... .|+|++||.+.=.
T Consensus 108 pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhhh
Confidence 678899999999999 77777655322 6899999998754
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=1.4e-06 Score=86.02 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=88.9
Q ss_pred CccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021 290 SLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP 367 (461)
Q Consensus 290 ~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~ 367 (461)
.|.+.+.+. .+..++.. ...+.++.|+++.|. +++.. .+..++.|++|++++| .+..+|.- + ..-
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN--~L~~vp~l--~-----~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYN--CLRHVPQL--S-----MVG 231 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccc--hhcccccc--c-----hhh
Confidence 344444444 44445443 456789999999988 33222 5788999999999998 88888773 2 122
Q ss_pred CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC---CCCcccccEeeccCCch
Q 045021 368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE---KGLPSSLLRLYIDECPL 427 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~---~~~~~~L~~L~i~~c~~ 427 (461)
-+|+.|.+++ |.++.+ .++.++.+|+.|++++ |-|...+. -..+..|++|++.++|.
T Consensus 232 c~L~~L~lrn-N~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 CKLQLLNLRN-NALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhheeeeecc-cHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3699999999 688888 6889999999999999 76666544 13367999999999874
No 56
>PLN03150 hypothetical protein; Provisional
Probab=97.43 E-value=0.00033 Score=72.20 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=78.2
Q ss_pred ccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEec
Q 045021 218 SLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIG 297 (461)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~ 297 (461)
.++.|++.++.....+|..++.+++|+.|++++|.....+|.....+++|+.|++++|.....+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888775556778888888999999998885545677666777889999998876666778888889999999998
Q ss_pred c-cCC-CcCCC--CCCCCcceEEeecCchhh
Q 045021 298 G-KLP-SLEED--GLPTNLHFLKIERNMEIW 324 (461)
Q Consensus 298 ~-~~~-~l~~~--~~~~~L~~L~l~~~~~l~ 324 (461)
+ .+. .+|.. ....++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 8 443 44432 223456778888876443
No 57
>PLN03150 hypothetical protein; Provisional
Probab=97.39 E-value=0.0003 Score=72.52 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=43.4
Q ss_pred cCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEec
Q 045021 55 LREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDI 132 (461)
Q Consensus 55 L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l 132 (461)
++.|+|+++.--..+|. ++.+++|+.|+++++..-..+|..+... ++|+.|+++++..-..++.. ..+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--TSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 55556655432223343 5556666666666654223455544444 56666666654322233332 55566666666
Q ss_pred ccCCCceEec
Q 045021 133 SHCDNIRTLT 142 (461)
Q Consensus 133 ~~~~~~~~l~ 142 (461)
+++.....+|
T Consensus 498 s~N~l~g~iP 507 (623)
T PLN03150 498 NGNSLSGRVP 507 (623)
T ss_pred cCCcccccCC
Confidence 6654333444
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=3.6e-06 Score=83.16 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=114.7
Q ss_pred hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeec-CC-------
Q 045021 19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIREC-DA------- 88 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~-~~------- 88 (461)
.+++.+-.+.++++.|.+-..+.-.-- |-.+-.|+.|+.|.+++|+--. .-. ...-..|++|.-.+. ..
T Consensus 74 ~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~as 152 (1096)
T KOG1859|consen 74 EQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFAS 152 (1096)
T ss_pred HHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHH
Confidence 344444445688888888876542211 5567789999999999996322 211 122234444432211 00
Q ss_pred -ccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEec
Q 045021 89 -LKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWD 166 (461)
Q Consensus 89 -l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 166 (461)
+.++..... + ..|...++++ +.++..... ..++.++.|++++++ +... +.+.. ++.|++||+++
T Consensus 153 cggd~~ns~~-W--n~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~~v---~~Lr~------l~~LkhLDlsy 218 (1096)
T KOG1859|consen 153 CGGDISNSPV-W--NKLATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FTKV---DNLRR------LPKLKHLDLSY 218 (1096)
T ss_pred hccccccchh-h--hhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hhhh---HHHHh------ccccccccccc
Confidence 111111111 1 3456666655 344433332 566788888888754 2211 23333 66788899988
Q ss_pred CCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc--cccCCCCCcc
Q 045021 167 CPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP--SGLHNLRQLQ 244 (461)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 244 (461)
+.++. +|....... +|+.|++++ +.++.+- .+.++.+|+.|++++|- +.... .-+..+..|+
T Consensus 219 -N~L~~-vp~l~~~gc-----------~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 219 -NCLRH-VPQLSMVGC-----------KLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLI 282 (1096)
T ss_pred -chhcc-ccccchhhh-----------hheeeeecc-cHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHH
Confidence 88877 555443332 488888888 4555443 45667788888888752 22221 1133456777
Q ss_pred EEEecCCC
Q 045021 245 EIQLWGCE 252 (461)
Q Consensus 245 ~L~l~~~~ 252 (461)
.|++.+|+
T Consensus 283 ~L~LeGNP 290 (1096)
T KOG1859|consen 283 VLWLEGNP 290 (1096)
T ss_pred HHhhcCCc
Confidence 77787765
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=8.2e-05 Score=66.20 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=67.9
Q ss_pred CCCCCcceEeeccCcccccccc---ccCCCCCccEEEecc-----cCCCcCCCCCCCCcceEEeecCchhhHHhhhhccc
Q 045021 262 LPCAKLSKLGIYRCERLEALPK---GLHNLKSLKKLRIGG-----KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFH 333 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~~~~---~~~~l~~L~~L~l~~-----~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 333 (461)
..++.++.+++.++ .+..|.+ .+.++|.|++|+++. .+..+| ....+|++|.+.|.. +........+.
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~-L~w~~~~s~l~ 143 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTG-LSWTQSTSSLD 143 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCC-CChhhhhhhhh
Confidence 34456777777773 4444432 446778888888777 223332 123577888777765 43333334466
Q ss_pred CCCCcCEEEEecCCCccccc--CccccccCCCCCCCCCcceeecCCCCCCc--ccccchhhccCCcEEEecCC
Q 045021 334 KFSSLRHLTIEGCDDDMVSF--PPEDRRLGTTLPLPASLASLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDC 402 (461)
Q Consensus 334 ~l~~L~~L~l~~~~~~~~~i--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C 402 (461)
.+|.++.|.++.| ..+.+ ..+ + .++..+.+++|++..|.... .+...-+.||++..+-+.+|
T Consensus 144 ~lP~vtelHmS~N--~~rq~n~Dd~-c----~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 144 DLPKVTELHMSDN--SLRQLNLDDN-C----IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred cchhhhhhhhccc--hhhhhccccc-c----ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 6777888887776 33222 111 1 01223456666666553221 11122234556665555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0021 Score=54.26 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=36.1
Q ss_pred CcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc---ccccCCCCCccEE
Q 045021 54 SLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY---IARVQLPPSLKRL 130 (461)
Q Consensus 54 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~L~~L 130 (461)
+...++|+++ .+..++.+..+++|..|.+.+++ +..+.+..... +++|+.|.+++ +++.. +.....+|.|+.|
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~-~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTF-LPNLKTLILTN-NSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhhh-ccccceEEecC-cchhhhhhcchhccCCcccee
Confidence 4445555554 23334444455555555555533 44444443332 25555555554 22222 2222445555555
Q ss_pred ecccC
Q 045021 131 DISHC 135 (461)
Q Consensus 131 ~l~~~ 135 (461)
.+-+.
T Consensus 119 tll~N 123 (233)
T KOG1644|consen 119 TLLGN 123 (233)
T ss_pred eecCC
Confidence 55553
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.54 E-value=0.00018 Score=63.21 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCCCcceEeeccCcccccccc----ccCCCCCccEEEecc-cCCCcCCC---------------CCCCCcceEEeecCc
Q 045021 262 LPCAKLSKLGIYRCERLEALPK----GLHNLKSLKKLRIGG-KLPSLEED---------------GLPTNLHFLKIERNM 321 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~~~~----~~~~l~~L~~L~l~~-~~~~l~~~---------------~~~~~L~~L~l~~~~ 321 (461)
..||.|++++++++..-...|+ .+++-+.|++|.+++ ++..+... ..-|.|+++....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3345556666555443332222 445566777777776 55544332 122567777666665
Q ss_pred hhhHHhhh--hcccCCCCcCEEEEecC
Q 045021 322 EIWKSMIE--RGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 322 ~l~~~~~~--~~~~~l~~L~~L~l~~~ 346 (461)
-....... ..+..-.+|+.+.+..|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeec
Confidence 32222211 12333357777777776
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0019 Score=56.73 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc-ccccCccccccCCC
Q 045021 286 HNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD-MVSFPPEDRRLGTT 363 (461)
Q Consensus 286 ~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~i~~~~~~~~~~ 363 (461)
..+..|+.|.+.+ .+.++.....+|+|+.|.++.|+.-........+..+|+|+++++++|..+ +.++..-
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl------- 112 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL------- 112 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-------
Confidence 3455566666666 555555555667888888877731111111223445588888888887222 2233332
Q ss_pred CCCCCCcceeecCCCCCCcccc----cchhhccCCcEEEecCCCC
Q 045021 364 LPLPASLASLTIGDFPNLERLS----SSIVDLQNLKYLKLYDCPK 404 (461)
Q Consensus 364 ~~~~~~L~~L~l~~~~~l~~i~----~~~~~~~~L~~L~l~~C~~ 404 (461)
..+.+|.+|++.+|.-.. +. ..+.-+++|++|+-.++..
T Consensus 113 -~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 113 -KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred -hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 345677888888774332 21 4456677888877776443
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.23 E-value=0.0013 Score=51.92 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=55.6
Q ss_pred cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhc
Q 045021 312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDL 391 (461)
Q Consensus 312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 391 (461)
+..++++.|..+.-......+.....|+..++++| +++.+|.. +. ..++.+..+.+++ +++.++|+.+..+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~k-ft-----~kf~t~t~lNl~~-neisdvPeE~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKK-FT-----IKFPTATTLNLAN-NEISDVPEELAAM 99 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHH-Hh-----hccchhhhhhcch-hhhhhchHHHhhh
Confidence 44566666654422222224555666777777776 77777766 43 4556677777777 5777777667777
Q ss_pred cCCcEEEecCCCCCcccCC
Q 045021 392 QNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~~~ 410 (461)
+.|+.|.++. +.+...|.
T Consensus 100 ~aLr~lNl~~-N~l~~~p~ 117 (177)
T KOG4579|consen 100 PALRSLNLRF-NPLNAEPR 117 (177)
T ss_pred HHhhhccccc-CccccchH
Confidence 7777777777 55555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00054 Score=60.56 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=62.7
Q ss_pred CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc--cch
Q 045021 311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--SSI 388 (461)
Q Consensus 311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--~~~ 388 (461)
+.+.|+.+||. +++.. ....|+.|+.|.++-| .+..+..- .-+++|++|+++. +.+.++. +.+
T Consensus 20 ~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvN--kIssL~pl--------~rCtrLkElYLRk-N~I~sldEL~YL 84 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVN--KISSLAPL--------QRCTRLKELYLRK-NCIESLDELEYL 84 (388)
T ss_pred HhhhhcccCCC-ccHHH---HHHhcccceeEEeecc--ccccchhH--------HHHHHHHHHHHHh-cccccHHHHHHH
Confidence 56667777776 44333 4667888888888876 56655442 3557788888887 5676664 456
Q ss_pred hhccCCcEEEecCCCCCcccCCC------CCcccccEeecc
Q 045021 389 VDLQNLKYLKLYDCPKLKYFSEK------GLPSSLLRLYID 423 (461)
Q Consensus 389 ~~~~~L~~L~l~~C~~l~~~~~~------~~~~~L~~L~i~ 423 (461)
.++|+|+.|.+.+.+....-+.. ..+|+|++||=.
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 77888888888775554443331 125677776543
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0024 Score=53.97 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=57.4
Q ss_pred CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchh
Q 045021 311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIV 389 (461)
Q Consensus 311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~ 389 (461)
.++.++-+++.... .....+..++.++.|.+.+| ..+.+..-+-++ ...++|+.|++++|+++++-. ..+.
T Consensus 102 ~IeaVDAsds~I~~--eGle~L~~l~~i~~l~l~~c-k~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY--EGLEHLRDLRSIKSLSLANC-KYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHH--HHHHHHhccchhhhheeccc-cchhhHHHHHhc-----ccccchheeeccCCCeechhHHHHHH
Confidence 35666666665332 22224677788888888887 444332211121 356789999999999887654 6778
Q ss_pred hccCCcEEEecCCCCCcc
Q 045021 390 DLQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 390 ~~~~L~~L~l~~C~~l~~ 407 (461)
++++|+.|.+.+.+.+..
T Consensus 174 ~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhhhhHHHHhcCchhhhc
Confidence 888888888887554443
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.26 E-value=0.0013 Score=51.97 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCC
Q 045021 51 SLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSC 112 (461)
Q Consensus 51 ~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 112 (461)
.-..|...+|+++ .+.++|+ ..+++-++.|+++++. +.++|.++..+ +.|+.|+++.+
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam--~aLr~lNl~~N 110 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAM--PALRSLNLRFN 110 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhh--HHhhhcccccC
Confidence 3344555555553 4455554 3444555566665533 55666655555 56666666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.00065 Score=60.06 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=46.2
Q ss_pred CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEe
Q 045021 266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIE 344 (461)
Q Consensus 266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 344 (461)
+.++|+..||. +.++. ....++.|++|.++- .+.++.....|.+|++|.|+.|. +.+.....-+.++|+|+.|++.
T Consensus 20 ~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhc
Confidence 45666666652 33331 245677777777776 66666666666677777776655 2222222335667777777776
Q ss_pred cC
Q 045021 345 GC 346 (461)
Q Consensus 345 ~~ 346 (461)
.|
T Consensus 97 EN 98 (388)
T KOG2123|consen 97 EN 98 (388)
T ss_pred cC
Confidence 65
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.80 E-value=0.017 Score=50.91 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc---ccccCCCC
Q 045021 49 SLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY---IARVQLPP 125 (461)
Q Consensus 49 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~ 125 (461)
...+..|+.|.+.++ .+.++..+-.+++||.|.++.+..-......+....+|+|+++++++ ++++. +.....+.
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhc
Confidence 334455555555554 33334334456666666666652111122222222236666666655 23332 22223344
Q ss_pred CccEEecccCC
Q 045021 126 SLKRLDISHCD 136 (461)
Q Consensus 126 ~L~~L~l~~~~ 136 (461)
+|..|++.+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 44455555443
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.0075 Score=51.01 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCc
Q 045021 72 VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNI 138 (461)
Q Consensus 72 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~ 138 (461)
+..++.++.|.+.+|..+.+...+......++|+.|++++|+.+++.... ..+++|+.|.+.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 56677888888888887776655444444588888888888888775443 56677777777765433
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.80 E-value=0.19 Score=39.97 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=11.0
Q ss_pred CCcceEeeccCcccccccc-ccCCCCCccEEEecc
Q 045021 265 AKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG 298 (461)
Q Consensus 265 ~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~ 298 (461)
++|+.+.+.. .++.++. .|.++++|+.+.+.+
T Consensus 12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 3455555542 2222222 344455555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.73 E-value=0.046 Score=28.42 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=10.4
Q ss_pred CccEEEecCCcCCccccccCC
Q 045021 30 RLEYLILRYCKGLVKLPQSSL 50 (461)
Q Consensus 30 ~L~~L~l~~~~~l~~l~~~~~ 50 (461)
+|++|++++| .++.+|.+|+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3556666654 3445555443
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.54 E-value=0.018 Score=51.14 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCCCccEEEecCCCCCc----cCCCCCCCCCCcceEeeccCc
Q 045021 239 NLRQLQEIQLWGCENLV----SFPEGGLPCAKLSKLGIYRCE 276 (461)
Q Consensus 239 ~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~c~ 276 (461)
.+.+|+.|++..|.... .+......++.|+.|.+.+|.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 45666666666653211 112233445567777777774
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.27 E-value=0.46 Score=37.76 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=19.9
Q ss_pred hcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeec
Q 045021 213 LDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIY 273 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 273 (461)
+..+.+|+.+.+.. .+..+. ..+.++++|+.+.+.+. +..+.. ....+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 44445555555542 222222 33445555555555442 333333 12223345555553
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.75 E-value=0.14 Score=24.69 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=3.5
Q ss_pred CcceeecCC
Q 045021 369 SLASLTIGD 377 (461)
Q Consensus 369 ~L~~L~l~~ 377 (461)
+|+.|++++
T Consensus 2 ~L~~L~l~~ 10 (17)
T PF13504_consen 2 NLRTLDLSN 10 (17)
T ss_dssp T-SEEEETS
T ss_pred ccCEEECCC
Confidence 344444444
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.43 E-value=0.23 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.9
Q ss_pred ccCCcEEEecCCCCCcc
Q 045021 391 LQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 391 ~~~L~~L~l~~C~~l~~ 407 (461)
|++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 45666666666666655
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.96 E-value=3.2 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=12.4
Q ss_pred cCCcEEEecCCCCCcccCC
Q 045021 392 QNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~~~ 410 (461)
++|+.|++.+ ++|+.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 5677777777 67777665
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.96 E-value=3.2 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=12.4
Q ss_pred cCCcEEEecCCCCCcccCC
Q 045021 392 QNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~~~ 410 (461)
++|+.|++.+ ++|+.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 5677777777 67777665
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.51 E-value=6 Score=21.50 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=12.2
Q ss_pred cCCcEEEecCCCCCcccCC
Q 045021 392 QNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~~~ 410 (461)
++|+.|.+++ ++++++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 3567777777 67777665
No 79
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=53.34 E-value=26 Score=21.70 Aligned_cols=29 Identities=34% Similarity=0.444 Sum_probs=12.7
Q ss_pred CccEEEecc-cCCCcCCCCCCCCcceEEee
Q 045021 290 SLKKLRIGG-KLPSLEEDGLPTNLHFLKIE 318 (461)
Q Consensus 290 ~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 318 (461)
++++|.+.+ --+.+.....|++|++|.+.
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 444444433 22333334445555555543
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.82 E-value=11 Score=19.64 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=5.2
Q ss_pred CCcCEEEecCC
Q 045021 53 SSLREIEICRC 63 (461)
Q Consensus 53 ~~L~~L~l~~~ 63 (461)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45666666655
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.28 E-value=7.1 Score=38.79 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=39.2
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccc---cccCCCCCCcCEEEecCCcCc-ccccCCCC--CCCccEEEEeecCCccc
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKL---PQSSLSLSSLREIEICRCHSL-VSFPEVAL--PSKLKKIEIRECDALKS 91 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~--l~~L~~L~l~~~~~l~~ 91 (461)
.+....+.++.+..++|++ +.+..+ ...-...|+|+.|+|+++... ..-+++.+ ...|++|-+.|++-.++
T Consensus 209 ~L~~~~~n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred HHHHhhcCCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3444445667777777776 333333 223335677888888876322 22223333 34567777777764433
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=38.82 E-value=27 Score=18.98 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=9.7
Q ss_pred cCCcEEEecCCCCCccc
Q 045021 392 QNLKYLKLYDCPKLKYF 408 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~ 408 (461)
.+|+.|++.+ +.|+.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 4566666666 666554
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.73 E-value=25 Score=35.17 Aligned_cols=87 Identities=13% Similarity=0.021 Sum_probs=40.4
Q ss_pred CCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc---
Q 045021 309 PTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS--- 385 (461)
Q Consensus 309 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~--- 385 (461)
.|.+..+.+++|....-..........|+|+.|++++|...+..-++- .. .....|++|.+.|.|--+..-
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K-----~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DK-----LKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hh-----hcCCCHHHeeecCCccccchhhhH
Confidence 345556666666533222222334456777777777751112111111 00 122356777777754333221
Q ss_pred ----cchhhccCCcEEEecC
Q 045021 386 ----SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 386 ----~~~~~~~~L~~L~l~~ 401 (461)
..-..||+|..|+=..
T Consensus 291 ~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred HHHHHHHHhcchheeecCcc
Confidence 2223567766665433
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.67 E-value=58 Score=17.76 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=6.6
Q ss_pred CCcCEEEecCC
Q 045021 53 SSLREIEICRC 63 (461)
Q Consensus 53 ~~L~~L~l~~~ 63 (461)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 35666666665
Done!