Query 045021
Match_columns 461
No_of_seqs 192 out of 2556
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 3E-29 1E-33 257.5 29.7 409 20-460 52-563 (606)
2 3rgz_A Protein brassinosteroid 100.0 9.9E-31 3.4E-35 274.9 17.0 389 29-450 269-766 (768)
3 4eco_A Uncharacterized protein 100.0 1.5E-29 5.2E-34 260.0 22.2 343 43-428 196-600 (636)
4 3rgz_A Protein brassinosteroid 100.0 5.5E-29 1.9E-33 261.6 25.6 428 4-457 197-717 (768)
5 3t6q_A CD180 antigen; protein- 100.0 5.6E-28 1.9E-32 248.0 31.1 389 3-427 53-559 (606)
6 2z63_A TOLL-like receptor 4, v 100.0 1E-28 3.5E-33 251.7 24.8 182 263-460 345-534 (570)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-28 1.1E-32 249.7 27.6 175 266-460 377-561 (606)
8 4eco_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 256.4 20.3 392 29-457 81-600 (636)
9 4ecn_A Leucine-rich repeat pro 100.0 1.3E-28 4.5E-33 257.8 24.0 340 45-427 440-839 (876)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-28 1.8E-32 256.7 28.4 251 193-460 266-563 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 7E-28 2.4E-32 247.2 27.5 219 194-427 329-557 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-28 3.6E-33 250.4 19.6 82 368-459 431-512 (549)
13 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-26 9E-31 238.7 32.4 105 194-298 249-362 (680)
14 1ziw_A TOLL-like receptor 3; i 100.0 3E-26 1E-30 238.3 31.3 123 3-135 45-181 (680)
15 4ecn_A Leucine-rich repeat pro 100.0 4.9E-27 1.7E-31 245.9 22.7 349 69-456 440-839 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-26 5.5E-31 232.7 25.6 361 29-427 21-480 (520)
17 2z63_A TOLL-like receptor 4, v 99.9 4.1E-26 1.4E-30 232.4 24.0 389 29-457 28-507 (570)
18 3j0a_A TOLL-like receptor 5; m 99.9 4E-25 1.4E-29 234.6 30.9 401 28-457 23-517 (844)
19 1o6v_A Internalin A; bacterial 99.9 1.1E-25 3.6E-30 223.3 24.5 340 29-426 46-386 (466)
20 1o6v_A Internalin A; bacterial 99.9 2.4E-25 8.2E-30 220.8 26.9 328 21-410 64-392 (466)
21 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-25 1.5E-29 223.8 28.2 379 29-457 26-486 (549)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-25 1.4E-29 224.4 24.3 363 28-427 51-509 (562)
23 3v47_A TOLL-like receptor 5B a 99.9 5E-25 1.7E-29 218.0 22.2 341 27-401 28-404 (455)
24 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-24 8.5E-29 216.7 26.0 355 19-406 39-481 (520)
25 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.8E-29 206.9 22.1 100 29-136 44-143 (347)
26 4fmz_A Internalin; leucine ric 99.9 2.5E-24 8.5E-29 205.2 23.7 306 49-406 40-346 (347)
27 1jl5_A Outer protein YOPM; leu 99.9 3.6E-24 1.2E-28 210.7 22.5 325 21-426 30-368 (454)
28 3v47_A TOLL-like receptor 5B a 99.9 4.1E-24 1.4E-28 211.4 19.7 358 33-427 14-407 (455)
29 2id5_A Lingo-1, leucine rich r 99.9 7.6E-23 2.6E-27 203.6 27.8 289 54-378 33-330 (477)
30 1jl5_A Outer protein YOPM; leu 99.9 1.1E-23 3.9E-28 207.2 20.4 346 29-458 11-371 (454)
31 4g8a_A TOLL-like receptor 4; l 99.9 1.9E-22 6.4E-27 207.9 29.7 371 28-426 51-578 (635)
32 3bz5_A Internalin-J, INLJ; leu 99.9 8.9E-23 3E-27 201.0 25.4 317 20-409 37-355 (457)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-23 2.9E-27 207.3 25.1 355 19-406 70-510 (562)
34 3o6n_A APL1; leucine-rich repe 99.9 5E-23 1.7E-27 199.4 21.0 302 51-427 43-351 (390)
35 2id5_A Lingo-1, leucine rich r 99.9 2.1E-22 7.3E-27 200.3 23.7 310 56-406 14-333 (477)
36 4g8a_A TOLL-like receptor 4; l 99.9 3.2E-22 1.1E-26 206.2 24.3 378 40-460 41-583 (635)
37 3bz5_A Internalin-J, INLJ; leu 99.9 7E-22 2.4E-26 194.6 22.1 284 20-384 59-354 (457)
38 3oja_B Anopheles plasmodium-re 99.9 4E-22 1.4E-26 203.6 20.4 301 52-427 50-357 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.3E-26 187.5 23.8 286 9-346 57-349 (390)
40 1xku_A Decorin; proteoglycan, 99.9 7.8E-21 2.7E-25 179.6 21.7 243 30-305 32-280 (330)
41 4fcg_A Uncharacterized protein 99.9 4E-21 1.4E-25 181.1 18.2 230 28-298 80-310 (328)
42 3oja_B Anopheles plasmodium-re 99.9 1.6E-20 5.4E-25 191.8 23.3 280 8-321 62-356 (597)
43 1xku_A Decorin; proteoglycan, 99.9 2.6E-20 8.8E-25 176.0 20.2 287 126-455 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-20 1.3E-24 175.0 21.1 199 194-402 124-330 (332)
45 2ft3_A Biglycan; proteoglycan, 99.8 5.1E-20 1.7E-24 174.2 19.7 286 126-455 34-331 (332)
46 3ogk_B Coronatine-insensitive 99.8 1.2E-21 3.9E-26 200.4 3.8 134 21-166 104-252 (592)
47 3ogk_B Coronatine-insensitive 99.8 6.6E-22 2.3E-26 202.2 -0.1 399 28-458 72-527 (592)
48 4fcg_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 171.2 14.9 215 195-423 83-309 (328)
49 1z7x_W Ribonuclease inhibitor; 99.8 5E-22 1.7E-26 196.8 -2.8 373 29-426 3-438 (461)
50 2p1m_B Transport inhibitor res 99.8 2.9E-21 9.8E-26 197.6 1.4 59 367-427 455-518 (594)
51 2p1m_B Transport inhibitor res 99.8 1.4E-21 4.8E-26 199.9 -1.6 395 29-456 66-518 (594)
52 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-19 6.1E-24 168.8 12.8 250 29-324 50-305 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.8 6.5E-18 2.2E-22 171.4 24.5 254 29-346 40-294 (622)
54 3zyj_A Leucine-rich repeat-con 99.8 3.5E-18 1.2E-22 168.0 19.9 219 158-401 65-288 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 4.8E-18 1.6E-22 167.5 19.7 196 193-401 99-299 (452)
56 2z80_A TOLL-like receptor 2, v 99.8 2.8E-18 9.7E-23 163.6 17.4 247 158-427 53-313 (353)
57 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.9E-23 163.2 13.7 221 194-428 77-304 (313)
58 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.4E-22 168.6 23.0 253 53-401 40-293 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-19 7.8E-24 168.4 7.8 244 21-298 26-271 (317)
60 2z80_A TOLL-like receptor 2, v 99.8 7.4E-18 2.5E-22 160.7 16.9 241 54-321 53-312 (353)
61 2z66_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 155.7 16.5 103 193-298 52-159 (306)
62 3zyj_A Leucine-rich repeat-con 99.8 7.4E-17 2.5E-21 158.5 22.6 236 32-321 46-290 (440)
63 2z66_A Variable lymphocyte rec 99.8 1.8E-17 6.3E-22 154.7 17.3 128 193-321 126-259 (306)
64 3zyi_A Leucine-rich repeat-con 99.7 4.6E-17 1.6E-21 160.5 20.1 238 159-427 56-302 (452)
65 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-20 7.4E-25 185.0 -4.1 343 52-428 2-411 (461)
66 3oja_A Leucine-rich immune mol 99.7 4.8E-18 1.6E-22 168.7 10.5 245 19-297 24-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.7 3.4E-17 1.2E-21 151.2 14.4 179 212-401 51-234 (285)
68 2xwt_C Thyrotropin receptor; s 99.7 4.3E-17 1.5E-21 146.4 14.4 197 218-427 32-238 (239)
69 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-16 6E-21 146.4 18.3 198 157-378 32-235 (285)
70 3o53_A Protein LRIM1, AGAP0063 99.7 6.9E-17 2.4E-21 151.5 13.0 192 212-426 53-248 (317)
71 4ay9_X Follicle-stimulating ho 99.7 2.1E-15 7.3E-20 143.3 19.9 100 194-298 155-255 (350)
72 2xwt_C Thyrotropin receptor; s 99.7 1.4E-15 4.7E-20 136.5 16.8 205 66-321 23-237 (239)
73 3oja_A Leucine-rich immune mol 99.7 2.5E-16 8.6E-21 156.3 13.0 192 212-426 53-248 (487)
74 1wwl_A Monocyte differentiatio 99.7 4E-18 1.4E-22 159.5 -0.5 199 215-426 93-307 (312)
75 4ay9_X Follicle-stimulating ho 99.7 1.6E-15 5.5E-20 144.2 16.8 236 129-401 13-255 (350)
76 1wwl_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 146.6 9.1 202 239-459 93-311 (312)
77 1h6u_A Internalin H; cell adhe 99.6 2.1E-15 7.1E-20 140.7 14.2 193 193-410 41-234 (308)
78 2z62_A TOLL-like receptor 4, v 99.6 4.5E-15 1.5E-19 136.2 15.0 195 193-401 28-233 (276)
79 1p9a_G Platelet glycoprotein I 99.6 6.1E-15 2.1E-19 136.1 14.8 193 156-378 9-205 (290)
80 2o6q_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 131.2 18.1 191 194-401 17-214 (270)
81 2o6q_A Variable lymphocyte rec 99.6 2.1E-14 7.1E-19 131.3 18.0 194 29-275 16-215 (270)
82 2z62_A TOLL-like receptor 4, v 99.6 6.2E-15 2.1E-19 135.3 13.9 196 217-425 28-234 (276)
83 4glp_A Monocyte differentiatio 99.6 4.5E-15 1.5E-19 138.6 12.9 223 194-426 65-305 (310)
84 1h6u_A Internalin H; cell adhe 99.6 5.1E-15 1.7E-19 138.0 12.5 193 156-385 40-233 (308)
85 1p9a_G Platelet glycoprotein I 99.6 2.5E-14 8.4E-19 132.1 16.5 75 29-111 10-86 (290)
86 2ast_B S-phase kinase-associat 99.6 2.1E-16 7.3E-21 149.5 1.9 226 157-425 70-303 (336)
87 2ast_B S-phase kinase-associat 99.6 4.5E-16 1.5E-20 147.2 4.0 220 195-425 49-282 (336)
88 3rfs_A Internalin B, repeat mo 99.6 1.4E-14 4.7E-19 132.6 13.1 205 29-290 41-247 (272)
89 3rfs_A Internalin B, repeat mo 99.6 2.6E-14 9E-19 130.8 12.5 182 21-240 59-245 (272)
90 4glp_A Monocyte differentiatio 99.5 7.7E-15 2.6E-19 137.0 8.3 204 156-407 90-308 (310)
91 3m19_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 120.2 15.5 169 218-401 15-188 (251)
92 3m19_A Variable lymphocyte rec 99.5 1.4E-12 4.9E-17 117.7 15.6 168 195-377 16-188 (251)
93 1h6t_A Internalin B; cell adhe 99.4 3.2E-13 1.1E-17 124.7 11.1 173 215-410 44-217 (291)
94 1h6t_A Internalin B; cell adhe 99.4 5.8E-13 2E-17 122.9 12.4 170 237-427 42-212 (291)
95 2ca6_A RAN GTPase-activating p 99.4 2.4E-14 8.2E-19 138.1 0.7 235 156-409 31-319 (386)
96 2ca6_A RAN GTPase-activating p 99.4 2.5E-14 8.4E-19 138.0 0.4 223 193-427 32-315 (386)
97 3cvr_A Invasion plasmid antige 99.4 3.2E-12 1.1E-16 128.1 14.7 174 30-251 60-240 (571)
98 1m9s_A Internalin B; cell inva 99.4 2.6E-12 8.7E-17 130.2 12.3 171 216-409 42-213 (605)
99 3cvr_A Invasion plasmid antige 99.4 6.7E-12 2.3E-16 125.8 14.9 184 194-407 60-244 (571)
100 4ezg_A Putative uncharacterize 99.4 2.8E-12 9.4E-17 111.2 10.5 128 213-346 62-191 (197)
101 3goz_A Leucine-rich repeat-con 99.4 1.4E-13 4.8E-18 131.4 2.3 222 191-426 20-295 (362)
102 1m9s_A Internalin B; cell inva 99.4 3.4E-12 1.2E-16 129.3 12.5 170 237-427 39-209 (605)
103 4ezg_A Putative uncharacterize 99.3 3.3E-12 1.1E-16 110.7 10.3 145 216-377 43-190 (197)
104 1xeu_A Internalin C; cellular 99.3 1.2E-12 4E-17 119.0 7.6 170 217-410 19-189 (263)
105 3e6j_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 106.6 15.7 144 243-401 21-168 (229)
106 2o6s_A Variable lymphocyte rec 99.3 5.9E-11 2E-15 103.7 13.1 156 53-240 28-188 (208)
107 3goz_A Leucine-rich repeat-con 99.2 4.8E-13 1.7E-17 127.7 -0.8 236 158-408 23-299 (362)
108 2xot_A Amphoterin-induced prot 99.2 6.5E-11 2.2E-15 112.8 11.3 126 221-355 22-153 (361)
109 2o6s_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 101.5 12.3 124 194-321 29-159 (208)
110 1xeu_A Internalin C; cellular 99.2 2.5E-11 8.6E-16 110.1 7.8 166 240-427 18-184 (263)
111 2v9t_B SLIT homolog 2 protein 99.2 3.2E-10 1.1E-14 99.9 13.5 126 194-321 33-163 (220)
112 3sb4_A Hypothetical leucine ri 99.2 7.4E-10 2.5E-14 104.0 16.6 107 194-305 203-314 (329)
113 2v70_A SLIT-2, SLIT homolog 2 99.1 2.9E-10 9.8E-15 100.2 12.1 146 267-427 13-165 (220)
114 1dce_A Protein (RAB geranylger 99.1 4E-13 1.4E-17 135.2 -7.1 196 193-421 349-566 (567)
115 3sb4_A Hypothetical leucine ri 99.1 4.2E-10 1.4E-14 105.7 13.0 80 334-425 224-307 (329)
116 2v70_A SLIT-2, SLIT homolog 2 99.1 5.3E-10 1.8E-14 98.5 12.8 107 213-321 53-164 (220)
117 3e6j_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 99.2 12.8 126 193-321 40-170 (229)
118 2ell_A Acidic leucine-rich nuc 99.1 1.9E-10 6.6E-15 96.7 9.2 133 266-410 25-164 (168)
119 2ell_A Acidic leucine-rich nuc 99.1 2E-10 6.8E-15 96.6 9.1 130 214-346 21-157 (168)
120 2v9t_B SLIT homolog 2 protein 99.1 8.1E-10 2.8E-14 97.3 12.9 126 158-298 33-161 (220)
121 2xot_A Amphoterin-induced prot 99.1 3.3E-10 1.1E-14 107.9 11.1 125 193-321 64-200 (361)
122 1dce_A Protein (RAB geranylger 99.1 2.8E-13 9.5E-18 136.4 -12.8 87 213-303 459-548 (567)
123 2je0_A Acidic leucine-rich nuc 99.0 4.1E-10 1.4E-14 92.6 7.8 123 266-400 18-148 (149)
124 4fdw_A Leucine rich hypothetic 99.0 2.5E-08 8.5E-13 95.9 20.0 210 194-424 158-379 (401)
125 4fdw_A Leucine rich hypothetic 99.0 6E-08 2.1E-12 93.2 22.7 253 29-321 113-381 (401)
126 2je0_A Acidic leucine-rich nuc 99.0 4.4E-10 1.5E-14 92.4 6.3 129 216-376 16-148 (149)
127 4fs7_A Uncharacterized protein 99.0 2.6E-08 9E-13 95.9 18.6 301 48-401 66-375 (394)
128 1a9n_A U2A', U2A'; complex (nu 99.0 6.5E-10 2.2E-14 94.2 6.2 132 285-430 15-155 (176)
129 4fs7_A Uncharacterized protein 99.0 1E-07 3.5E-12 91.7 22.4 305 66-424 59-375 (394)
130 1w8a_A SLIT protein; signaling 98.9 5.3E-09 1.8E-13 89.9 10.1 125 267-406 10-139 (192)
131 1a9n_A U2A', U2A'; complex (nu 98.9 2.3E-09 7.7E-14 90.8 7.4 102 29-136 19-124 (176)
132 2wfh_A SLIT homolog 2 protein 98.9 1.1E-08 3.7E-13 87.9 11.0 104 310-426 31-137 (193)
133 2o6r_A Variable lymphocyte rec 98.9 1.5E-08 5.1E-13 85.8 10.8 85 332-426 48-135 (177)
134 4b8c_D Glucose-repressible alc 98.8 1.3E-09 4.6E-14 113.0 4.4 110 232-346 215-326 (727)
135 4b8c_D Glucose-repressible alc 98.8 6.2E-10 2.1E-14 115.5 1.7 109 210-321 217-327 (727)
136 1w8a_A SLIT protein; signaling 98.8 3.2E-08 1.1E-12 84.9 9.8 103 194-298 30-135 (192)
137 1ds9_A Outer arm dynein; leuci 98.7 1.4E-10 4.8E-15 100.4 -5.4 60 236-298 43-102 (198)
138 2wfh_A SLIT homolog 2 protein 98.7 5.9E-08 2E-12 83.3 11.1 79 194-274 32-111 (193)
139 1ds9_A Outer arm dynein; leuci 98.7 7.8E-10 2.7E-14 95.7 -3.0 143 194-342 24-180 (198)
140 2o6r_A Variable lymphocyte rec 98.6 2.3E-07 8E-12 78.3 11.2 56 194-251 29-86 (177)
141 4gt6_A Cell surface protein; l 98.6 5.5E-06 1.9E-10 79.5 21.1 98 30-134 65-169 (394)
142 4gt6_A Cell surface protein; l 98.5 1E-05 3.5E-10 77.6 21.8 104 284-401 260-366 (394)
143 2r9u_A Variable lymphocyte rec 98.5 7.9E-07 2.7E-11 74.8 10.4 97 32-135 15-115 (174)
144 2r9u_A Variable lymphocyte rec 98.5 4.4E-07 1.5E-11 76.4 8.8 103 293-408 16-120 (174)
145 4h09_A Hypothetical leucine ri 98.5 5.1E-05 1.7E-09 72.3 24.3 111 285-410 236-349 (379)
146 3g39_A Variable lymphocyte rec 98.5 8.7E-07 3E-11 74.2 10.4 98 31-135 11-112 (170)
147 3g39_A Variable lymphocyte rec 98.4 6.7E-07 2.3E-11 74.9 8.5 103 292-407 12-116 (170)
148 4h09_A Hypothetical leucine ri 98.4 7.9E-05 2.7E-09 71.0 22.3 289 48-385 41-348 (379)
149 3e4g_A ATP synthase subunit S, 98.3 3E-07 1E-11 76.4 3.9 63 54-117 62-129 (176)
150 2ra8_A Uncharacterized protein 98.3 7.3E-07 2.5E-11 84.1 6.1 60 235-297 166-227 (362)
151 3e4g_A ATP synthase subunit S, 98.3 5.2E-07 1.8E-11 75.0 4.3 89 29-119 61-156 (176)
152 2ifg_A High affinity nerve gro 98.2 2.8E-06 9.5E-11 80.1 8.2 74 41-119 20-96 (347)
153 2ra8_A Uncharacterized protein 98.2 6.6E-06 2.3E-10 77.6 10.3 162 235-407 133-321 (362)
154 2ifg_A High affinity nerve gro 98.1 1.3E-05 4.3E-10 75.5 10.0 84 21-112 27-113 (347)
155 3un9_A NLR family member X1; l 97.9 9.9E-07 3.4E-11 83.8 -1.4 157 240-409 71-255 (372)
156 3un9_A NLR family member X1; l 97.8 4.6E-07 1.6E-11 86.1 -5.0 15 332-346 207-221 (372)
157 1io0_A Tropomodulin; LRR prote 96.7 0.00057 1.9E-08 57.7 2.3 107 309-426 35-162 (185)
158 3rw6_A Nuclear RNA export fact 96.7 0.0011 3.6E-08 59.3 4.1 58 28-87 169-231 (267)
159 1io0_A Tropomodulin; LRR prote 96.5 0.00092 3.2E-08 56.4 2.2 77 29-109 36-128 (185)
160 3rw6_A Nuclear RNA export fact 96.4 0.0016 5.4E-08 58.2 3.0 11 311-321 221-231 (267)
161 3rfe_A Platelet glycoprotein I 92.2 0.23 7.9E-06 38.7 5.5 35 366-401 29-64 (130)
162 3rfe_A Platelet glycoprotein I 90.3 0.42 1.4E-05 37.2 5.3 51 372-426 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 78.9 0.83 2.8E-05 38.3 1.9 33 368-401 98-135 (197)
164 1pgv_A TMD-1, tropomodulin TMD 78.3 0.52 1.8E-05 39.5 0.5 17 211-227 64-80 (197)
165 2lz0_A Uncharacterized protein 31.0 56 0.0019 23.5 4.0 34 366-401 18-52 (100)
166 2lz0_A Uncharacterized protein 23.1 77 0.0026 22.8 3.5 35 49-85 16-52 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=3e-29 Score=257.46 Aligned_cols=409 Identities=15% Similarity=0.121 Sum_probs=197.5
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccC-ccc
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLP-EAW 96 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~-~~~ 96 (461)
.+..+ ++|++|+++++.-....|..|.++++|++|++++|. +..+++ ++.+++|++|+++++. +..++ ..+
T Consensus 52 ~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~ 125 (606)
T 3t6q_A 52 TFSRL----INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPL 125 (606)
T ss_dssp TSTTC----TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCC
T ss_pred HhccC----ccceEEECCCCccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccC-cccCCcchh
Confidence 45555 777777777643222335567777777777777753 333422 6667777777777654 55442 333
Q ss_pred ccCCCCcccEEEeeCCCCCccc--cccCCCCCccEEecccCCCceEe-ccCCCcccccccccccCcc--EEEEecCCCCe
Q 045021 97 MCGTNSSLEILKIWSCHSLPYI--ARVQLPPSLKRLDISHCDNIRTL-TVEDGIQSSSRRYTSYLLE--KLEIWDCPSLT 171 (461)
Q Consensus 97 ~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~ 171 (461)
.. +++|++|+++++ .++.+ +....+++|++|+++++. +..+ + ..+.. +++|+ .|++++ +.+.
T Consensus 126 ~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~------l~~L~~l~L~l~~-n~l~ 192 (606)
T 3t6q_A 126 HN--QKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSK--EDMSS------LQQATNLSLNLNG-NDIA 192 (606)
T ss_dssp TT--CTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC-CCEECH--HHHHT------TTTCCSEEEECTT-CCCC
T ss_pred cc--CCcccEEECCCC-cccccCcccccCCcccCEEEcccCc-ccccCh--hhhhh------hcccceeEEecCC-CccC
Confidence 22 367777777664 34333 333446677777776654 2222 2 22222 23344 444444 3333
Q ss_pred ecccCCCCcc-----------------------------------------------------hhhhccc----------
Q 045021 172 CIFSKNELPA-----------------------------------------------------TLESLEV---------- 188 (461)
Q Consensus 172 ~~~~~~~~~~-----------------------------------------------------~~~~~~~---------- 188 (461)
. .+...+.. .++.+.+
T Consensus 193 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 193 G-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp E-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred c-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 3 11111100 0000000
Q ss_pred --CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCC
Q 045021 189 --GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCA 265 (461)
Q Consensus 189 --~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~ 265 (461)
...+++|++|++.++ .+..+|..+..+++|++|++++|......+..+..+++|++|++++|.....++. ....++
T Consensus 272 ~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 111244555555553 3334444455555555555555432222234455555555555555533323333 233445
Q ss_pred CcceEeeccCcccccc--ccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCE
Q 045021 266 KLSKLGIYRCERLEAL--PKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRH 340 (461)
Q Consensus 266 ~L~~L~l~~c~~~~~~--~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 340 (461)
+|++|++++|...... +..+..+++|++|++++ .+..+... ..+++|++|++++|.. ....+...+..+++|++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCE
Confidence 5666666554322211 33455566666666655 33333211 3345666666666552 21222223455666666
Q ss_pred EEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcc--cc--cchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021 341 LTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLER--LS--SSIVDLQNLKYLKLYDCPKLKYFSEKGL--P 414 (461)
Q Consensus 341 L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--i~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~ 414 (461)
|++++| .+...+...+ ..+++|++|+++++ .+.. ++ ..+..+++|++|++++ ++++.++...+ .
T Consensus 430 L~l~~n--~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 430 LNLSHS--LLDISSEQLF------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSL 499 (606)
T ss_dssp EECTTC--CCBTTCTTTT------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTT-SCCCEECTTTTTTC
T ss_pred EECCCC--ccCCcCHHHH------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCC-CccCccChhhhccc
Confidence 666665 4443332212 24556666666664 3332 11 3455666666666666 35555543222 4
Q ss_pred ccccEeeccCCchhHHhhc------------------ccCccccccccccceEEEcccEEecCC
Q 045021 415 SSLLRLYIDECPLIEEKCR------------------KDGEQYWDLLTHIPRVRIHLPVVFDDS 460 (461)
Q Consensus 415 ~~L~~L~i~~c~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (461)
++|++|++++|........ ......+..+.++..+++.+|++.+++
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 6666666666632211100 001112334556777888888877654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=9.9e-31 Score=274.87 Aligned_cols=389 Identities=17% Similarity=0.132 Sum_probs=231.1
Q ss_pred CCccEEEecCCcCCccccccCCC-CCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcc-cccCCCCccc
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLS-LSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLE 105 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~-l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~ 105 (461)
++|++|+++++.-...+|..+.. +++|++|++++|.....+|. ++.+++|++|++++|.....+|.. +... ++|+
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~ 346 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLK 346 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCC
Confidence 56666666654322244544443 25555555555532223333 455555555555554422244433 2222 4455
Q ss_pred EEEeeCCCC------------------------Cc-ccccc-C--CCCCccEEecccCCCceEeccCCCccccccccccc
Q 045021 106 ILKIWSCHS------------------------LP-YIARV-Q--LPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSY 157 (461)
Q Consensus 106 ~L~l~~~~~------------------------l~-~~~~~-~--~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (461)
+|+++++.. ++ .++.. . .+++|++|+++++.....+| ..+.. ++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~------l~ 418 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSN------CS 418 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGG------CT
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhc------CC
Confidence 555544321 11 11111 1 14556666666655333455 44444 55
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccccc
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGL 237 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 237 (461)
+|+.|++++ +.++...|. .+.. +++|+.|++.++.....++..+..+++|++|++++|.....+|..+
T Consensus 419 ~L~~L~Ls~-N~l~~~~p~-~l~~----------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 419 ELVSLHLSF-NYLSGTIPS-SLGS----------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp TCCEEECCS-SEEESCCCG-GGGG----------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCEEECcC-CcccCcccH-HHhc----------CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 777777777 454431111 1111 2578888888876555667777888888888888876555677788
Q ss_pred CCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCC-CcCC----------
Q 045021 238 HNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLP-SLEE---------- 305 (461)
Q Consensus 238 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~-~l~~---------- 305 (461)
..+++|+.|++++|.....+|.....+++|++|++++|.....+|..+..+++|++|++++ .+. .+|.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 8888888888888865556666666677888888888776667788888888888888887 221 1111
Q ss_pred -------------------------------------------------------------CCCCCCcceEEeecCchhh
Q 045021 306 -------------------------------------------------------------DGLPTNLHFLKIERNMEIW 324 (461)
Q Consensus 306 -------------------------------------------------------------~~~~~~L~~L~l~~~~~l~ 324 (461)
...+++|+.|++++|. +.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~ 645 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LS 645 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CB
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-cc
Confidence 1123568888888887 33
Q ss_pred HHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCC
Q 045021 325 KSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCP 403 (461)
Q Consensus 325 ~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~ 403 (461)
+..+ ..++.+++|+.|++++| .+. .+|.. ++ .+++|++|+++++.-...+|..+..+++|++|++++++
T Consensus 646 g~ip-~~l~~l~~L~~L~Ls~N--~l~g~ip~~-l~------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 646 GYIP-KEIGSMPYLFILNLGHN--DISGSIPDE-VG------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp SCCC-GGGGGCTTCCEEECCSS--CCCSCCCGG-GG------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ccCC-HHHhccccCCEEeCcCC--ccCCCCChH-Hh------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 3333 24778888999999987 554 66766 53 67789999999853334778888888999999999843
Q ss_pred CCcccCCCCCcccccEeeccCCchh----HHhhcccCccccccccccceEE
Q 045021 404 KLKYFSEKGLPSSLLRLYIDECPLI----EEKCRKDGEQYWDLLTHIPRVR 450 (461)
Q Consensus 404 ~l~~~~~~~~~~~L~~L~i~~c~~l----~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
--..+|..+.+.++....+.+||.+ -..|....+++|.+++|++.++
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 3344666666667777777776532 2368888899999999998764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.5e-29 Score=260.04 Aligned_cols=343 Identities=17% Similarity=0.215 Sum_probs=256.9
Q ss_pred ccccccCCCCCCcCEEEecCCcCccc------------------ccC-CC--CCCCccEEEEeecCCccccCcccccCCC
Q 045021 43 VKLPQSSLSLSSLREIEICRCHSLVS------------------FPE-VA--LPSKLKKIEIRECDALKSLPEAWMCGTN 101 (461)
Q Consensus 43 ~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 101 (461)
..+|..++++++|++|++++|. +.. +|. ++ .+++|++|++++|.....+|..+...
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-- 272 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-- 272 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--
T ss_pred ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--
Confidence 3477778889999999999875 665 777 77 89999999999987677788777766
Q ss_pred CcccEEEeeCCCCCcc--cccc-CC------CCCccEEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCC
Q 045021 102 SSLEILKIWSCHSLPY--IARV-QL------PPSLKRLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSL 170 (461)
Q Consensus 102 ~~L~~L~l~~~~~l~~--~~~~-~~------~~~L~~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l 170 (461)
++|+.|+++++..++. +|.. .. +++|++|+++++. +..+| . .+.. +++|+.|++++ +.+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip--~~~~l~~------l~~L~~L~L~~-N~l 342 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFP--VETSLQK------MKKLGMLECLY-NQL 342 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCC--CHHHHTT------CTTCCEEECCS-CCC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccC--chhhhcc------CCCCCEEeCcC-CcC
Confidence 8999999998754553 4433 32 3889999999876 44677 6 5555 66899999998 677
Q ss_pred e-ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCc-cceeeccccccceecccccCCCC--CccEE
Q 045021 171 T-CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTS-LEMISILWCENLKFLPSGLHNLR--QLQEI 246 (461)
Q Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L 246 (461)
+ . +| .+... ++|+.|++.++ .+..+|..+..+++ |++|++++|. +..+|..+..++ +|+.|
T Consensus 343 ~g~-ip--~~~~l----------~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 343 EGK-LP--AFGSE----------IKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp EEE-CC--CCEEE----------EEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEE
T ss_pred ccc-hh--hhCCC----------CCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEE
Confidence 7 5 55 33332 57999999885 45577777888888 9999999874 557787776654 89999
Q ss_pred EecCCCCCccCCCCCC-------CCCCcceEeeccCccccccccc-cCCCCCccEEEecc-cCCCcCCCCCC--------
Q 045021 247 QLWGCENLVSFPEGGL-------PCAKLSKLGIYRCERLEALPKG-LHNLKSLKKLRIGG-KLPSLEEDGLP-------- 309 (461)
Q Consensus 247 ~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~c~~~~~~~~~-~~~l~~L~~L~l~~-~~~~l~~~~~~-------- 309 (461)
++++|......|.... .+++|++|++++|. ++.+|.. +..+++|++|++++ .+..++.....
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 9999855444444333 55689999999864 4566653 45689999999999 77777654221
Q ss_pred -CCcceEEeecCchhhHHhhhhcc--cCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC------CCC
Q 045021 310 -TNLHFLKIERNMEIWKSMIERGF--HKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD------FPN 380 (461)
Q Consensus 310 -~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~ 380 (461)
++|++|++++|. ++ ..+. .+ ..+++|++|++++| .+..+|.. ++ .+++|+.|++++ +.-
T Consensus 487 l~~L~~L~Ls~N~-l~-~lp~-~~~~~~l~~L~~L~Ls~N--~l~~ip~~-~~------~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 487 TYLLTSIDLRFNK-LT-KLSD-DFRATTLPYLVGIDLSYN--SFSKFPTQ-PL------NSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp GGGCCEEECCSSC-CC-BCCG-GGSTTTCTTCCEEECCSS--CCSSCCCG-GG------GCSSCCEEECCSCBCTTCCBC
T ss_pred cCCccEEECcCCc-CC-ccCh-hhhhccCCCcCEEECCCC--CCCCcChh-hh------cCCCCCEEECCCCcccccCcc
Confidence 289999999987 33 2332 34 38999999999998 77778776 43 678999999954 333
Q ss_pred CcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchh
Q 045021 381 LERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLI 428 (461)
Q Consensus 381 l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l 428 (461)
...+|..+..+++|++|++++ ++++.+|.. +.++|++|++++|+..
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGS-NDIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCS-SCCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCC-CcCCccCHh-HhCcCCEEECcCCCCc
Confidence 467788889999999999999 677888875 4489999999999643
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.5e-29 Score=261.59 Aligned_cols=428 Identities=17% Similarity=0.126 Sum_probs=261.8
Q ss_pred cCCCCccccccch--h---hhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCc
Q 045021 4 DSCPKLQSLVAEE--E---KDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKL 78 (461)
Q Consensus 4 ~~c~~l~~l~~~~--~---~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L 78 (461)
..|.+|++|..+. + ...++.+ ++|++|+++++.--..+|..++.+++|++|++++|.....+|.. .+++|
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDC----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTC----CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCcccccC----CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCC
Confidence 4556666665421 1 1125555 78888888875432356667777888888888777433333333 56677
Q ss_pred cEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCC-cccccccccc
Q 045021 79 KKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTS 156 (461)
Q Consensus 79 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~ 156 (461)
++|++++|.....+|..+... +++|++|+++++..-..++.. ..+++|++|+++++.....+| .. +.. +
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip--~~~l~~------l 342 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--MDTLLK------M 342 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTT-CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC--HHHHTT------C
T ss_pred CEEECcCCccCCccCHHHHhh-cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC--HHHHhc------C
Confidence 777777665222455544332 356666666664322222222 445566666666554222333 22 222 3
Q ss_pred cCccEEEEecCCCCeecccCCCC--cchhhhccc--------------CCCCCCccEEEEecCCchhhhHHhhcCCCccc
Q 045021 157 YLLEKLEIWDCPSLTCIFSKNEL--PATLESLEV--------------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLE 220 (461)
Q Consensus 157 ~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~~--------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 220 (461)
++|+.|++++ +.+...+|.... +..++.+.+ ...+++|+.|++.+|.....++..+..+++|+
T Consensus 343 ~~L~~L~Ls~-n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 343 RGLKVLDLSF-NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp TTCCEEECCS-SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CCCCEEeCcC-CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 3455555554 233211111100 000111111 00135788898888765556777888899999
Q ss_pred eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-c
Q 045021 221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-K 299 (461)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~ 299 (461)
+|++++|.....+|..++.+++|+.|++++|.....++.....+++|++|++++|.....+|..+..+++|++|++++ .
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 999998865557788888889999999998865556666666677899999998776667788888899999999988 5
Q ss_pred CC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccC---------------
Q 045021 300 LP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLG--------------- 361 (461)
Q Consensus 300 ~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~--------------- 361 (461)
+. .+|.. +.+++|++|++++|.. ....+ ..+..+++|+.|++++| .+. .+|.. +...
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p-~~l~~l~~L~~L~Ls~N--~l~g~ip~~-~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSF-SGNIP-AELGDCRSLIWLDLNTN--LFNGTIPAA-MFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCC-EEECC-GGGGGCTTCCEEECCSS--EEESBCCGG-GGTTTTCBCCSTTCSCEEE
T ss_pred cCCcCChHHhcCCCCCEEECCCCcc-cCcCC-HHHcCCCCCCEEECCCC--ccCCcCChH-Hhcccchhhhhcccccccc
Confidence 54 44433 5677899999998873 22222 24778889999999887 332 44432 1100
Q ss_pred -------------------------------------------------CCCCCCCCcceeecCCCCCCcccccchhhcc
Q 045021 362 -------------------------------------------------TTLPLPASLASLTIGDFPNLERLSSSIVDLQ 392 (461)
Q Consensus 362 -------------------------------------------------~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~ 392 (461)
.....+++|+.|+++++.-...+|..+..++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 0011246788888888543347778888888
Q ss_pred CCcEEEecCCCCCc-ccCCC-CCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021 393 NLKYLKLYDCPKLK-YFSEK-GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF 457 (461)
Q Consensus 393 ~L~~L~l~~C~~l~-~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
+|+.|++++ ++++ .+|.. +-.++|++|++++|... ....+.+..+..+..+++.+|.+.
T Consensus 657 ~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 657 YLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp TCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCccc-----CcCChHHhCCCCCCEEECcCCccc
Confidence 888888888 5665 45542 22578888888887532 112234556667777777777654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.6e-28 Score=247.99 Aligned_cols=389 Identities=17% Similarity=0.136 Sum_probs=217.1
Q ss_pred ccCCCCccccccchh------hhhhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCC
Q 045021 3 IDSCPKLQSLVAEEE------KDQQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VAL 74 (461)
Q Consensus 3 ~~~c~~l~~l~~~~~------~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~ 74 (461)
++++++|++|..+.- ...+..+ ++|++|+++++.-....|..++++++|++|++++| .+..+++ ++.
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~ 127 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQ----HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHN 127 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTC----TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTT
T ss_pred hccCccceEEECCCCccceeChhhccCc----cccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhcc
Confidence 556677777665221 1446667 99999999985532344778999999999999997 4565533 788
Q ss_pred CCCccEEEEeecCCccccC-cccccCCCCcccEEEeeCCCCCccccc--cCCCCCcc--EEecccCCCceEeccCCCccc
Q 045021 75 PSKLKKIEIRECDALKSLP-EAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLK--RLDISHCDNIRTLTVEDGIQS 149 (461)
Q Consensus 75 l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~--~L~l~~~~~~~~l~~~~~~~~ 149 (461)
+++|++|+++++. +..++ ..+.. +++|+.|+++++ .++.++. ...+++|+ +|+++++.. ..++ .....
T Consensus 128 l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l-~~~~--~~~~~ 200 (606)
T 3t6q_A 128 QKTLESLYLGSNH-ISSIKLPKGFP--TEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIE--PGAFD 200 (606)
T ss_dssp CTTCCEEECCSSC-CCCCCCCTTCC--CTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCC-CEEC--TTTTT
T ss_pred CCcccEEECCCCc-ccccCcccccC--CcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCcc-CccC--hhHhh
Confidence 9999999999976 66543 23333 488888888874 4444322 24455565 566655432 1111 10000
Q ss_pred --------------------------------------------------------------------cc--ccccccCc
Q 045021 150 --------------------------------------------------------------------SS--RRYTSYLL 159 (461)
Q Consensus 150 --------------------------------------------------------------------~~--~~~~~~~L 159 (461)
.. ....+++|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 00 00113456
Q ss_pred cEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccC
Q 045021 160 EKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLH 238 (461)
Q Consensus 160 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~ 238 (461)
+.|++++ +.++. +|... ..+++|++|++.++......+..+..+++|++|++++|.....++ ..+.
T Consensus 281 ~~L~l~~-n~l~~-lp~~l-----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 281 QELDLTA-THLSE-LPSGL-----------VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp SEEECTT-SCCSC-CCSSC-----------CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred CEEeccC-CccCC-CChhh-----------cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 6666666 44444 33321 112456666666653333333445555555555555543332232 2244
Q ss_pred CCCCccEEEecC--------------------------CCCCccCCCCCCCCCCcceEeeccCcccccccc-ccCCCCCc
Q 045021 239 NLRQLQEIQLWG--------------------------CENLVSFPEGGLPCAKLSKLGIYRCERLEALPK-GLHNLKSL 291 (461)
Q Consensus 239 ~l~~L~~L~l~~--------------------------~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L 291 (461)
.+++|+.|++++ |......+.....+++|++|++++|......+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 444555555544 422222222333344555555555433222222 25556666
Q ss_pred cEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHh-hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021 292 KKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSM-IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP 367 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~ 367 (461)
++|++++ .+...+. ...+++|++|++++|....... ....+..+++|++|++++| .+..++...+ ..+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l 499 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC--DLSSIDQHAF------TSL 499 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS--CCCEECTTTT------TTC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC--ccCccChhhh------ccc
Confidence 6666666 4333222 1345667777777765222111 1123566777777777776 5555543323 256
Q ss_pred CCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021 368 ASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPL 427 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~ 427 (461)
++|++|+++++ .+. ..+..+..+++| +|++++ ++++.++...+ .++|++|++++||.
T Consensus 500 ~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 500 KMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cCCCEEECCCC-ccCcCChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 67888888875 443 344677777888 888888 66776665433 57889999998874
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=251.66 Aligned_cols=182 Identities=18% Similarity=0.090 Sum_probs=99.0
Q ss_pred CCCCcceEeeccCccccc--cccccCCCCCccEEEecc-cCCCcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCc
Q 045021 263 PCAKLSKLGIYRCERLEA--LPKGLHNLKSLKKLRIGG-KLPSLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSL 338 (461)
Q Consensus 263 ~~~~L~~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 338 (461)
.+++|++|++++|..... .+..+..+++|++|++++ .+..++. ...+++|++|++++|. +....+...+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence 345666666665432111 133455666666666666 4433332 2345566777776665 2222222245566777
Q ss_pred CEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCc--ccccchhhccCCcEEEecCCCCCcccCCCCC--c
Q 045021 339 RHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--P 414 (461)
Q Consensus 339 ~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~ 414 (461)
++|++++| .+.......+ ..+++|++|++++| .+. .+|..+..+++|++|++++ ++++.++...+ +
T Consensus 424 ~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 493 (570)
T 2z63_A 424 IYLDISHT--HTRVAFNGIF------NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSL 493 (570)
T ss_dssp CEEECTTS--CCEECCTTTT------TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTC
T ss_pred CEEeCcCC--cccccchhhh------hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCC-CccccCChhhhhcc
Confidence 77777766 4444333213 24567777777774 333 4556666777777777777 45555533222 4
Q ss_pred ccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecCC
Q 045021 415 SSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDS 460 (461)
Q Consensus 415 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (461)
++|++|++++|... ......+..+.++..+++.+|.+.+++
T Consensus 494 ~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 494 SSLQVLNMASNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TTCCEEECCSSCCS-----CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCCCEEeCCCCcCC-----CCCHHHhhcccCCcEEEecCCcccCCC
Confidence 67777777776321 112223445566777777777766543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.3e-28 Score=249.71 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=96.1
Q ss_pred CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcC---CCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021 266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLE---EDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL 341 (461)
Q Consensus 266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 341 (461)
+|++|++++|. ++.+|..+..+++|++|++++ .+..++ ....+++|++|++++|.... . ....+..+++|++|
T Consensus 377 ~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 377 SLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-D-FDGIFLGLTSLNTL 453 (606)
T ss_dssp CCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-C-CTTTTTTCTTCCEE
T ss_pred cccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-c-chhhhcCCCCCCEE
Confidence 34444444332 223334444555555555555 222221 12344556666666555211 1 11234556666666
Q ss_pred EEecCCCcccc--cCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--ccc
Q 045021 342 TIEGCDDDMVS--FPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSS 416 (461)
Q Consensus 342 ~l~~~~~~~~~--i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~ 416 (461)
++++| .+.. ++.. + ..+++|++|++++| .+..+ +..+..+++|++|++++ ++++.++...+ .++
T Consensus 454 ~l~~n--~l~~~~~~~~-~------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 454 KMAGN--SFKDNTLSNV-F------ANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSH-NNLLFLDSSHYNQLYS 522 (606)
T ss_dssp ECTTC--EEGGGEECSC-C------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCEEGGGTTTCTT
T ss_pred ECCCC--cCCCcchHHh-h------ccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCC-CcCCCcCHHHccCCCc
Confidence 66665 4432 3332 3 25678888888885 45444 45677788888888888 46666533222 578
Q ss_pred ccEeeccCCchhHHhhcccCcccccccc-ccceEEEcccEEecCC
Q 045021 417 LLRLYIDECPLIEEKCRKDGEQYWDLLT-HIPRVRIHLPVVFDDS 460 (461)
Q Consensus 417 L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 460 (461)
|++|++++|... . . .. .+..+. .+..+++.+|++.+++
T Consensus 523 L~~L~l~~N~l~-~-~---p~-~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 523 LSTLDCSFNRIE-T-S---KG-ILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CCEEECTTSCCC-C-E---ES-CGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCEEECCCCcCc-c-c---CH-hHhhhcccCcEEEccCCCcccCC
Confidence 888888887522 1 1 11 134443 5888999999888765
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.6e-29 Score=256.45 Aligned_cols=392 Identities=13% Similarity=0.164 Sum_probs=290.2
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCc--------------------------------------------
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCH-------------------------------------------- 64 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~-------------------------------------------- 64 (461)
.+++.|+|+++.--..+|..++++++|++|++++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 478888888855333678888889999999988763
Q ss_pred ---------------------------------CcccccC-CCCCCCccEEEEeecCCccc------------------c
Q 045021 65 ---------------------------------SLVSFPE-VALPSKLKKIEIRECDALKS------------------L 92 (461)
Q Consensus 65 ---------------------------------~l~~~~~-~~~l~~L~~L~l~~~~~l~~------------------~ 92 (461)
.+..+|. ++.+++|++|+++++. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 2334666 8889999999999987 666 8
Q ss_pred Ccccc--cCCCCcccEEEeeCCCCCcccccc-CCCCCccEEecccCCCce--EeccCCCcccccccccccCccEEEEecC
Q 045021 93 PEAWM--CGTNSSLEILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIR--TLTVEDGIQSSSRRYTSYLLEKLEIWDC 167 (461)
Q Consensus 93 ~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~--~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 167 (461)
|..+. .. ++|++|++++|.....+|.. ..+++|++|+++++..+. .+| ..+........+++|+.|++++
T Consensus 240 p~~l~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~- 314 (636)
T 4eco_A 240 TEDLKWDNL--KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGY- 314 (636)
T ss_dssp TSCCCGGGC--TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCS-
T ss_pred chhhhhccc--CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCC-
Confidence 88877 66 99999999998766667654 788999999999987344 466 5554411111136899999999
Q ss_pred CCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCC-ccEE
Q 045021 168 PSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ-LQEI 246 (461)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L 246 (461)
+.++. +|... .+ ..+++|+.|++.++.....++ .+..+++|++|++++| .+..+|..+..+++ |+.|
T Consensus 315 n~l~~-ip~~~---~l------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 315 NNLKT-FPVET---SL------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENL 382 (636)
T ss_dssp SCCSS-CCCHH---HH------TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEE
T ss_pred CcCCc-cCchh---hh------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEE
Confidence 66655 44300 11 112679999999975444777 7888999999999987 46688988999999 9999
Q ss_pred EecCCCCCccCCCCCCC--CCCcceEeeccCccccccccccC-------CCCCccEEEecc-cCCCcCCC--CCCCCcce
Q 045021 247 QLWGCENLVSFPEGGLP--CAKLSKLGIYRCERLEALPKGLH-------NLKSLKKLRIGG-KLPSLEED--GLPTNLHF 314 (461)
Q Consensus 247 ~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~~~~~~~~~~-------~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~ 314 (461)
++++|. +..+|..... +++|++|++++|......|..+. .+++|++|++++ .+..++.. ..+++|++
T Consensus 383 ~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 999984 5677775444 34899999999876666676676 788999999999 77777764 34789999
Q ss_pred EEeecCchhhHHhhhhcccCC-------CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc
Q 045021 315 LKIERNMEIWKSMIERGFHKF-------SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS 387 (461)
Q Consensus 315 L~l~~~~~l~~~~~~~~~~~l-------~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 387 (461)
|++++|. ++ ..+...+... ++|++|++++| .+..++.. +. ...+++|+.|++++ +.+..+|..
T Consensus 462 L~Ls~N~-l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~-~~----~~~l~~L~~L~Ls~-N~l~~ip~~ 531 (636)
T 4eco_A 462 INLMGNM-LT-EIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDD-FR----ATTLPYLVGIDLSY-NSFSKFPTQ 531 (636)
T ss_dssp EECCSSC-CS-BCCSSSSEETTEECTTGGGCCEEECCSS--CCCBCCGG-GS----TTTCTTCCEEECCS-SCCSSCCCG
T ss_pred EECCCCC-CC-CcCHHHhccccccccccCCccEEECcCC--cCCccChh-hh----hccCCCcCEEECCC-CCCCCcChh
Confidence 9999998 33 3333233333 39999999998 77788876 30 01578999999999 477779988
Q ss_pred hhhccCCcEEEecCCC-----C-CcccCCC-CCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021 388 IVDLQNLKYLKLYDCP-----K-LKYFSEK-GLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF 457 (461)
Q Consensus 388 ~~~~~~L~~L~l~~C~-----~-l~~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
+..+++|+.|++++++ + ...+|.. .-+++|++|++++|.. .. .. . .+. ..+..+++.+|.+.
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-ip---~-~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK-VN---E-KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB-CC---S-CCC--TTCCEEECCSCTTC
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc-cC---H-hHh--CcCCEEECcCCCCc
Confidence 9999999999996532 2 3344442 2268999999999975 21 11 1 122 67888888888543
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-28 Score=257.78 Aligned_cols=340 Identities=16% Similarity=0.200 Sum_probs=260.6
Q ss_pred ccccCCCCCCcCEEEecCCcCccc------------------ccC-CC--CCCCccEEEEeecCCccccCcccccCCCCc
Q 045021 45 LPQSSLSLSSLREIEICRCHSLVS------------------FPE-VA--LPSKLKKIEIRECDALKSLPEAWMCGTNSS 103 (461)
Q Consensus 45 l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~-~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 103 (461)
+|..++++++|++|+|++|. +.. +|. ++ .+++|++|++++|.....+|..+... ++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SS
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CC
Confidence 77788899999999999974 555 777 66 89999999999988777888877776 89
Q ss_pred ccEEEeeCCCCCcc--ccc--------cCCCCCccEEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCCe
Q 045021 104 LEILKIWSCHSLPY--IAR--------VQLPPSLKRLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSLT 171 (461)
Q Consensus 104 L~~L~l~~~~~l~~--~~~--------~~~~~~L~~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~ 171 (461)
|+.|+++++..++. +|. ...+++|++|+++++. +..+| . .+.. +++|+.|++++ +.++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip--~~~~l~~------L~~L~~L~Ls~-N~l~ 586 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFP--ASASLQK------MVKLGLLDCVH-NKVR 586 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCC--CHHHHTT------CTTCCEEECTT-SCCC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccC--Chhhhhc------CCCCCEEECCC-CCcc
Confidence 99999998754554 432 2455699999999976 44777 6 5655 67899999998 6666
Q ss_pred ecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCc-cceeeccccccceecccccCCCCC--ccEEEe
Q 045021 172 CIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTS-LEMISILWCENLKFLPSGLHNLRQ--LQEIQL 248 (461)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l 248 (461)
. +| .+... ++|+.|++.++. +..++..+..+++ |++|++++|. +..+|..+..++. |+.|++
T Consensus 587 ~-lp--~~~~L----------~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 587 H-LE--AFGTN----------VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp B-CC--CCCTT----------SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEEC
T ss_pred c-ch--hhcCC----------CcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEEC
Confidence 5 55 33222 679999999864 4477777888888 9999999874 5577877776654 999999
Q ss_pred cCCCCCccCCCC-----CCCCCCcceEeeccCcccccccccc-CCCCCccEEEecc-cCCCcCCCCC---------CCCc
Q 045021 249 WGCENLVSFPEG-----GLPCAKLSKLGIYRCERLEALPKGL-HNLKSLKKLRIGG-KLPSLEEDGL---------PTNL 312 (461)
Q Consensus 249 ~~~~~l~~l~~~-----~~~~~~L~~L~l~~c~~~~~~~~~~-~~l~~L~~L~l~~-~~~~l~~~~~---------~~~L 312 (461)
++|.....++.. ....++|+.|++++|. ++.+|..+ ..+++|+.|++++ .+..++.... +++|
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 998544333321 1234589999999964 55777644 4899999999999 7777776422 1289
Q ss_pred ceEEeecCchhhHHhhhhccc--CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC------CCCCccc
Q 045021 313 HFLKIERNMEIWKSMIERGFH--KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD------FPNLERL 384 (461)
Q Consensus 313 ~~L~l~~~~~l~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~i 384 (461)
++|++++|. +. ..+. .+. .+++|+.|++++| .+..+|.. ++ .+++|+.|++++ +.-...+
T Consensus 731 ~~L~Ls~N~-L~-~lp~-~l~~~~l~~L~~L~Ls~N--~L~~lp~~-l~------~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 731 TTIDLRFNK-LT-SLSD-DFRATTLPYLSNMDVSYN--CFSSFPTQ-PL------NSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp CEEECCSSC-CC-CCCG-GGSTTTCTTCCEEECCSS--CCSSCCCG-GG------GCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cEEECCCCC-Cc-cchH-HhhhccCCCcCEEEeCCC--CCCccchh-hh------cCCCCCEEECCCCCCcccccccccC
Confidence 999999997 44 2332 344 8999999999998 77778776 43 678999999986 3334677
Q ss_pred ccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 385 SSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 385 ~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
|..+..+++|+.|++++ +.++.+|.. +.++|+.|++++|+.
T Consensus 799 p~~l~~L~~L~~L~Ls~-N~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGS-NDIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CTTGGGCSSCCEEECCS-SCCCBCCSC-CCSSSCEEECCSCTT
T ss_pred hHHHhcCCCCCEEECCC-CCCCccCHh-hcCCCCEEECCCCCC
Confidence 88899999999999999 677888885 558999999999975
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=256.69 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=151.5
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEe
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLG 271 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 271 (461)
++|+.|++.++......+..+..+++|++|++++|......+..+..+++|++|++++|. +..+ +.....+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEE
Confidence 467777777654333334466777778888887764444445667777788888887773 3333 44555667788888
Q ss_pred eccCcccccc-ccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchh-------------------hHHhhhh
Q 045021 272 IYRCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEI-------------------WKSMIER 330 (461)
Q Consensus 272 l~~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l-------------------~~~~~~~ 330 (461)
+++|. +..+ +..+..+++|++|++++ .+..++. +++|+.|++++|... .......
T Consensus 345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 87763 4444 33567777777777777 5444332 334444444433211 0000011
Q ss_pred cccCCCCcCEEEEecCCCcccccCccc-cc-----------------------cCCCCCCCCCcceeecCCCCCCcccc-
Q 045021 331 GFHKFSSLRHLTIEGCDDDMVSFPPED-RR-----------------------LGTTLPLPASLASLTIGDFPNLERLS- 385 (461)
Q Consensus 331 ~~~~l~~L~~L~l~~~~~~~~~i~~~~-~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~~i~- 385 (461)
.+..+++|+.|++++| .+..++... .. .......+++|+.|+++++ .++.++
T Consensus 421 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 497 (844)
T 3j0a_A 421 FLLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP 497 (844)
T ss_dssp HHTTCTTCCEEEEESC--CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT
T ss_pred hhhcCCccceeeCCCC--cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccCh
Confidence 1335666666666665 333221110 00 0001124567788888874 565555
Q ss_pred cchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecCC
Q 045021 386 SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDDS 460 (461)
Q Consensus 386 ~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (461)
..+..+++|+.|++++ ++++.++...++++|+.|++++|.... .....+..+..+++.+|+..|+|
T Consensus 498 ~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~--------~~~~~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 498 GVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLA--------PNPDVFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp TSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCC--------CCSCCCSSCCEEEEEEECCCCSS
T ss_pred hHccchhhhheeECCC-CCCCccChhhhhccccEEECCCCcCCC--------CChhHhCCcCEEEecCCCccccc
Confidence 4567889999999999 789988887777899999999874321 11122457888999999888765
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=7e-28 Score=247.23 Aligned_cols=219 Identities=18% Similarity=0.087 Sum_probs=158.0
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeecccccccee---cccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceE
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKF---LPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKL 270 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 270 (461)
+|+.|++.++...... .+..+++|++|++++|. +.. .+..+..+++|++|++++| .+..++.....+++|++|
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHL 404 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEE
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCee
Confidence 3444444443222222 34456666667666653 222 2566677888888888887 456666666778899999
Q ss_pred eeccCccccccc-cccCCCCCccEEEecc-cCCCcC-C-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 271 GIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLE-E-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 271 ~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~-~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
++++|......+ ..+..+++|++|++++ .+.... . ...+++|++|++++|. +.+......+..+++|++|++++|
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC
Confidence 999976555555 4788999999999999 554432 2 2567899999999997 333223345788999999999998
Q ss_pred CCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCC--CCcccccEeecc
Q 045021 347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEK--GLPSSLLRLYID 423 (461)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~L~~L~i~ 423 (461)
.+..++...+ ..+++|++|+++++ .+..+ |..+..+++|++|++++ ++++.+|.. .++++|++|+++
T Consensus 484 --~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 484 --QLEQISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp --CCCEECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECC
T ss_pred --cCCccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEcc
Confidence 7766655434 36789999999996 56554 68889999999999999 679998875 223579999999
Q ss_pred CCch
Q 045021 424 ECPL 427 (461)
Q Consensus 424 ~c~~ 427 (461)
+||.
T Consensus 554 ~N~~ 557 (606)
T 3vq2_A 554 NNSV 557 (606)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 8764
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.1e-28 Score=250.37 Aligned_cols=82 Identities=24% Similarity=0.273 Sum_probs=48.6
Q ss_pred CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccc
Q 045021 368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIP 447 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 447 (461)
++|++|+++++ .++.++ ..+++|++|++++ ++++.+|.....++|++|++++|... ....+.+..+.++.
T Consensus 431 ~~L~~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSFS---LFLPRLQELYISR-NKLKTLPDASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQ 500 (549)
T ss_dssp TTCSEEECCSS-CCSCCC---CCCTTCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCC
T ss_pred CCceEEECCCC-Chhhhc---ccCChhcEEECCC-CccCcCCCcccCccCCEEecCCCccC-----CcCHHHHhcCcccC
Confidence 34555555552 333332 3567777777777 56777766444677777777776321 11222345566777
Q ss_pred eEEEcccEEecC
Q 045021 448 RVRIHLPVVFDD 459 (461)
Q Consensus 448 ~~~~~~~~~~~~ 459 (461)
.+++.+|.+.++
T Consensus 501 ~L~l~~N~~~~~ 512 (549)
T 2z81_A 501 KIWLHTNPWDCS 512 (549)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEecCCCccCC
Confidence 777777776654
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.6e-26 Score=238.70 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=50.5
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCc-----cCCC----CCCCC
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLV-----SFPE----GGLPC 264 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~----~~~~~ 264 (461)
+|+.|+++++......+..+..+++|++|++++|......+..+..+++|+.|+++++.... .++. ....+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 36666666643322233455666666666666654334444555556666666665432111 1111 22234
Q ss_pred CCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021 265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
++|++|++++|......+..+..+++|++|++++
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 4555555555433222233445555555555543
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3e-26 Score=238.29 Aligned_cols=123 Identities=19% Similarity=0.161 Sum_probs=77.7
Q ss_pred ccCCCCccccccch--h----hhhhhhhhhhcCCccEEEecCCcCCccccc-cCCCCCCcCEEEecCCcCcccccC--CC
Q 045021 3 IDSCPKLQSLVAEE--E----KDQQQQLCELSCRLEYLILRYCKGLVKLPQ-SSLSLSSLREIEICRCHSLVSFPE--VA 73 (461)
Q Consensus 3 ~~~c~~l~~l~~~~--~----~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~ 73 (461)
+.+|++|++|..+. + ...+..+ ++|++|+++++ .+..+|. .|+++++|++|++++| .+..+++ ++
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 118 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKL----PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFV 118 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHC----TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcc----cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHcc
Confidence 45566666666521 0 1446667 88899999884 4566665 5888888888888887 4566654 77
Q ss_pred CCCCccEEEEeecCCccccC-cccccCCCCcccEEEeeCCCCCcccccc----CCCCCccEEecccC
Q 045021 74 LPSKLKKIEIRECDALKSLP-EAWMCGTNSSLEILKIWSCHSLPYIARV----QLPPSLKRLDISHC 135 (461)
Q Consensus 74 ~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~ 135 (461)
.+++|++|+++++. +...+ ..+.. +++|++|+++++ .++.++.. ..+++|++|+++++
T Consensus 119 ~l~~L~~L~Ls~n~-l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 119 KQKNLITLDLSHNG-LSSTKLGTQVQ--LENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp TCTTCCEEECCSSC-CSCCCCCSSSC--CTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ccCCCCEEECCCCc-ccccCchhhcc--cccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 78888888888865 44433 33333 377777777764 33333221 23356666666654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.9e-27 Score=245.90 Aligned_cols=349 Identities=11% Similarity=0.125 Sum_probs=243.0
Q ss_pred ccC-CCCCCCccEEEEeecCCccc------------------cCcccc--cCCCCcccEEEeeCCCCCcccccc-CCCCC
Q 045021 69 FPE-VALPSKLKKIEIRECDALKS------------------LPEAWM--CGTNSSLEILKIWSCHSLPYIARV-QLPPS 126 (461)
Q Consensus 69 ~~~-~~~l~~L~~L~l~~~~~l~~------------------~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 126 (461)
+|. ++.+++|++|+++++. +.. +|..+. .. ++|+.|++++|.....+|.. ..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL--KDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC--TTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccC--CCCCEEECcCCCCCccChHHHhCCCC
Confidence 666 7788999999999976 665 787765 55 88999999988766666654 77889
Q ss_pred ccEEecccCCCce--EeccCCCccccc-ccccccCccEEEEecCCCCeecccC-CCCcchhhhcccCCCCCCccEEEEec
Q 045021 127 LKRLDISHCDNIR--TLTVEDGIQSSS-RRYTSYLLEKLEIWDCPSLTCIFSK-NELPATLESLEVGNQPPSLKSLNVWS 202 (461)
Q Consensus 127 L~~L~l~~~~~~~--~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (461)
|+.|+++++..+. .+| ..+.... ....+++|+.|++++ +.+.. +|. ..+.. +++|+.|++.+
T Consensus 517 L~~L~Ls~N~~lsg~~iP--~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~-ip~~~~l~~----------L~~L~~L~Ls~ 582 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLK--ADWTRLADDEDTGPKIQIFYMGY-NNLEE-FPASASLQK----------MVKLGLLDCVH 582 (876)
T ss_dssp CCEEECTTCTTSCHHHHH--HHHHHHHHCTTTTTTCCEEECCS-SCCCB-CCCHHHHTT----------CTTCCEEECTT
T ss_pred CCEEECcCCCCcccccch--HHHHhhhhcccccCCccEEEeeC-CcCCc-cCChhhhhc----------CCCCCEEECCC
Confidence 9999999876343 366 5554421 222345899999998 66665 443 11111 25799999988
Q ss_pred CCchhhhHHhhcCCCccceeeccccccceecccccCCCCC-ccEEEecCCCCCccCCCCCCCC--CCcceEeeccCcccc
Q 045021 203 CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQ-LQEIQLWGCENLVSFPEGGLPC--AKLSKLGIYRCERLE 279 (461)
Q Consensus 203 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l~~~~~~~--~~L~~L~l~~c~~~~ 279 (461)
+. +..+| .+..+++|+.|++++|. +..+|..+..+++ |+.|++++|. +..+|...... ++|+.|++++|....
T Consensus 583 N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 583 NK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCC
Confidence 64 44667 78888999999999874 4478888888888 9999999884 55777644443 349999999876444
Q ss_pred cccc---ccC--CCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhccc-------CCCCcCEEEEe
Q 045021 280 ALPK---GLH--NLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFH-------KFSSLRHLTIE 344 (461)
Q Consensus 280 ~~~~---~~~--~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~l~~L~~L~l~ 344 (461)
.+|. .+. .+++|++|++++ .+..++.. ..+++|+.|++++|. +. ..+...+. ++++|++|+++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT-SIPENSLKPKDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS-CCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC-ccChHHhccccccccccCCccEEECC
Confidence 3332 222 345899999998 77777654 356789999999886 33 23332232 23389999999
Q ss_pred cCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCC-----C-CcccCCC-CCcccc
Q 045021 345 GCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCP-----K-LKYFSEK-GLPSSL 417 (461)
Q Consensus 345 ~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~-----~-l~~~~~~-~~~~~L 417 (461)
+| .+..+|.. +. ...+++|+.|++++ +.+..+|..+..+++|+.|++++++ + ...+|.. .-+++|
T Consensus 737 ~N--~L~~lp~~-l~----~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 737 FN--KLTSLSDD-FR----ATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp SS--CCCCCCGG-GS----TTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CC--CCccchHH-hh----hccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 98 77777775 30 01567999999999 4777788888899999999997632 2 3334432 226899
Q ss_pred cEeeccCCchhHHhhcccCccccccccccceEEEcccEE
Q 045021 418 LRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVV 456 (461)
Q Consensus 418 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (461)
++|++++|.. . .+. . .+. .++..+++.+|.+
T Consensus 809 ~~L~Ls~N~L-~-~Ip---~-~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 809 IQLQIGSNDI-R-KVD---E-KLT--PQLYILDIADNPN 839 (876)
T ss_dssp CEEECCSSCC-C-BCC---S-CCC--SSSCEEECCSCTT
T ss_pred CEEECCCCCC-C-ccC---H-hhc--CCCCEEECCCCCC
Confidence 9999999865 2 111 1 122 4788888888765
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=232.69 Aligned_cols=361 Identities=18% Similarity=0.138 Sum_probs=220.5
Q ss_pred CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccc-cC-CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021 29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSF-PE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE 105 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 105 (461)
++|++|+++++. +..++ ..+..+++|++|++++| .+..+ |. ++.+++|++|+++++. ++.+|.. . +++|+
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~--l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--P--TVNLK 93 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--C--CCCCS
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc--c--cCCcc
Confidence 899999999965 56554 67999999999999998 46656 43 8899999999999976 8888877 3 49999
Q ss_pred EEEeeCCCCCcc--cc-ccCCCCCccEEecccCCCceEeccCCCcccccccccccCc--cEEEEecCCCC--eecccCCC
Q 045021 106 ILKIWSCHSLPY--IA-RVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL--EKLEIWDCPSL--TCIFSKNE 178 (461)
Q Consensus 106 ~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~l--~~~~~~~~ 178 (461)
+|+++++ .++. ++ ..+.+++|++|+++++. +.. ..+.. +++| +.|++++ +.+ ....+..
T Consensus 94 ~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~------l~~L~L~~L~l~~-n~l~~~~~~~~~- 159 (520)
T 2z7x_B 94 HLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK----SSVLP------IAHLNISKVLLVL-GETYGEKEDPEG- 159 (520)
T ss_dssp EEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG----GGGGG------GTTSCEEEEEEEE-CTTTTSSCCTTT-
T ss_pred EEeccCC-ccccccchhhhccCCcceEEEecCcc-cch----hhccc------cccceeeEEEeec-cccccccccccc-
Confidence 9999996 4554 32 34788999999999975 222 12222 3456 9999998 454 2212221
Q ss_pred Ccchh-hhc---------------ccCCCCCCccEEEEecCC-------chhhhHHhhcCC-------------------
Q 045021 179 LPATL-ESL---------------EVGNQPPSLKSLNVWSCS-------KLESIAERLDNN------------------- 216 (461)
Q Consensus 179 ~~~~~-~~~---------------~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~l------------------- 216 (461)
+...- +.+ .....+++|+.+++.++. ....++ .+..+
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHH
Confidence 11100 000 001123456666665542 111111 22333
Q ss_pred --------Cccceeeccccccceeccccc-----CCCCCccEEEecCCCCCccCCC------------------------
Q 045021 217 --------TSLEMISILWCENLKFLPSGL-----HNLRQLQEIQLWGCENLVSFPE------------------------ 259 (461)
Q Consensus 217 --------~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~l~~l~~------------------------ 259 (461)
++|++|++++|...+.+|..+ +.+++|+.++++++.. .+|.
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence 356666666653333566655 6666666666655432 2221
Q ss_pred C--CCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC----CCCCCCcceEEeecCchhhHHhhhhcc
Q 045021 260 G--GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE----DGLPTNLHFLKIERNMEIWKSMIERGF 332 (461)
Q Consensus 260 ~--~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~ 332 (461)
. ...+++|++|++++|.....+|..+..+++|++|++++ .+..++. ...+++|++|++++|. +....+...+
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~ 395 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDC 395 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchh
Confidence 0 13445677777776544444555666677777777766 5543322 2455667777777666 2222222235
Q ss_pred cCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC
Q 045021 333 HKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK 411 (461)
Q Consensus 333 ~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~ 411 (461)
..+++|++|++++| .+. .++.. .+++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|..
T Consensus 396 ~~l~~L~~L~Ls~N--~l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~ 462 (520)
T 2z7x_B 396 SWTKSLLSLNMSSN--ILTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDG 462 (520)
T ss_dssp CCCTTCCEEECCSS--CCCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTT
T ss_pred ccCccCCEEECcCC--CCCcchhhh---------hcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHH
Confidence 56667777777776 342 23332 3357788888774 6777776666777888888877 577777764
Q ss_pred CC--cccccEeeccCCch
Q 045021 412 GL--PSSLLRLYIDECPL 427 (461)
Q Consensus 412 ~~--~~~L~~L~i~~c~~ 427 (461)
.+ .++|++|++++|+.
T Consensus 463 ~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhccCCcccEEECcCCCC
Confidence 22 56777888777653
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=232.37 Aligned_cols=389 Identities=19% Similarity=0.210 Sum_probs=207.1
Q ss_pred CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021 29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE 105 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 105 (461)
+++++|+++++ .+..+ +..|.++++|++|++++| .+..+++ ++.+++|++|+++++. +..++...+.. +++|+
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSLQ 103 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-CTTCC
T ss_pred ccccEEEccCC-ccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcC-ccccc
Confidence 56777777763 34444 335667777777777776 3555543 5667777777777755 55554332222 36777
Q ss_pred EEEeeCCCCCccccc--cCCCCCccEEecccCCCce-EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcch
Q 045021 106 ILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIR-TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPAT 182 (461)
Q Consensus 106 ~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 182 (461)
+|+++++ .++.++. ...+++|++|+++++.... .+| ..+.. +++|+.|++++ +.++. .+...+...
T Consensus 104 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~------l~~L~~L~l~~-n~l~~-~~~~~~~~l 172 (570)
T 2z63_A 104 KLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSN------LTNLEHLDLSS-NKIQS-IYCTDLRVL 172 (570)
T ss_dssp EEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC--GGGGG------CTTCCEEECTT-SCCCE-ECGGGGHHH
T ss_pred ccccccc-ccccCCCccccccccccEEecCCCccceecCh--hhhcc------cCCCCEEeCcC-Cccce-ecHHHccch
Confidence 7777664 4444443 3566677777777654221 234 44444 45666666666 44444 221111000
Q ss_pred h------hhccc------------CCCCCCccEEEEecCCch-hh-----------------------------------
Q 045021 183 L------ESLEV------------GNQPPSLKSLNVWSCSKL-ES----------------------------------- 208 (461)
Q Consensus 183 ~------~~~~~------------~~~~~~L~~L~l~~~~~l-~~----------------------------------- 208 (461)
- ..+.+ ... .+|+.|++.++... ..
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 0 00000 000 24777776654110 11
Q ss_pred ----------------------hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021 209 ----------------------IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK 266 (461)
Q Consensus 209 ----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 266 (461)
.+..+..+++|++|+++++ .+..+|..+..+ +|+.|++++| .+..++. ..+++
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~--~~l~~ 326 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPT--LKLKS 326 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCB--CBCSS
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCc--ccccc
Confidence 1122333455555555544 233445445444 5555555554 2333333 23345
Q ss_pred cceEeeccCccccccccccCCCCCccEEEecc-cCCCcC---C-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEE
Q 045021 267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLE---E-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHL 341 (461)
Q Consensus 267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 341 (461)
|++|++.+|......+. ..+++|++|++++ .+.... . ...+++|++|++++|.... . +. .+..+++|++|
T Consensus 327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~-~~-~~~~l~~L~~L 401 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M-SS-NFLGLEQLEHL 401 (570)
T ss_dssp CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-E-EE-EEETCTTCCEE
T ss_pred cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-c-cc-cccccCCCCEE
Confidence 66666655443332221 4566666666666 433321 1 1344566666666665221 1 11 25567777777
Q ss_pred EEecCCCcccccCc-cccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc--ccCCC-CCcccc
Q 045021 342 TIEGCDDDMVSFPP-EDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK--YFSEK-GLPSSL 417 (461)
Q Consensus 342 ~l~~~~~~~~~i~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~--~~~~~-~~~~~L 417 (461)
++++| .+...+. ..+ ..+++|++|++++|.-....+..+..+++|++|++++| .++ .+|.. ..+++|
T Consensus 402 ~l~~n--~l~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 402 DFQHS--NLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNL 472 (570)
T ss_dssp ECTTS--EEESCTTSCTT------TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTC
T ss_pred EccCC--ccccccchhhh------hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCC
Confidence 77776 4444322 112 35678888888886433344566778888888888884 444 34432 225888
Q ss_pred cEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021 418 LRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF 457 (461)
Q Consensus 418 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
++|++++|... ......+..+.++..+++.++.+.
T Consensus 473 ~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 473 TFLDLSQCQLE-----QLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCccc-----cCChhhhhcccCCCEEeCCCCcCC
Confidence 99999888432 112234455678888888887654
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=4e-25 Score=234.63 Aligned_cols=401 Identities=16% Similarity=0.156 Sum_probs=220.7
Q ss_pred cCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCc
Q 045021 28 SCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSS 103 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~ 103 (461)
++++++|+|+++. +..+ +..+.++++|++|++++|.....+++ ++.+++|++|+++++. +..+ |..+... ++
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l--~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGL--FH 98 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSC--SS
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCC--cc
Confidence 3666777776633 3433 45566667777777766644444533 6666667777766655 4443 4444433 66
Q ss_pred ccEEEeeCCCCCccccc---cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021 104 LEILKIWSCHSLPYIAR---VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP 180 (461)
Q Consensus 104 L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 180 (461)
|++|+++++.--...+. ...+++|++|+++++. +..++....+.. +++|+.|++++ +.++. .....+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~------L~~L~~L~Ls~-N~i~~-~~~~~l~ 169 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK------LNSLKSIDFSS-NQIFL-VCEHELE 169 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT------CSSCCEEEEES-SCCCC-CCSGGGH
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh------CCCCCEEECCC-CcCCe-eCHHHcc
Confidence 66666666432222222 3456666666666654 222210012332 44666666666 44433 1111110
Q ss_pred c----hhhhcccC------------CCC------CCccEEEEecCCchhhhHH---------------------------
Q 045021 181 A----TLESLEVG------------NQP------PSLKSLNVWSCSKLESIAE--------------------------- 211 (461)
Q Consensus 181 ~----~~~~~~~~------------~~~------~~L~~L~l~~~~~l~~~~~--------------------------- 211 (461)
. .++.+.+. ..+ .+|+.|+++++......+.
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 0 00000000 000 1377777776522111111
Q ss_pred ---------hhcC--CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccc
Q 045021 212 ---------RLDN--NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEA 280 (461)
Q Consensus 212 ---------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~ 280 (461)
.+.. .++|+.|++++|......+..+..+++|+.|++++|..-...+.....+++|++|++++|.-...
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1111 26788888888755455567788889999999998743333344556677899999988754444
Q ss_pred cccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccc
Q 045021 281 LPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPED 357 (461)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~ 357 (461)
.+..+..+++|++|++++ .+..++.. ..+++|++|++++|. ++ .+..+++|+.|.+++| .+..++...
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~------~i~~~~~L~~L~l~~N--~l~~l~~~~ 400 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LT------TIHFIPSIPDIFLSGN--KLVTLPKIN 400 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SC------CCSSCCSCSEEEEESC--CCCCCCCCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CC------cccCCCCcchhccCCC--Ccccccccc
Confidence 466788899999999988 66666643 456889999999887 22 2444788888888887 666665420
Q ss_pred ccc-----C-----CC-----CCCCCCcceeecCCCCCCcccc--cchhhccCCcEEEecCCCCCcccCCC-------CC
Q 045021 358 RRL-----G-----TT-----LPLPASLASLTIGDFPNLERLS--SSIVDLQNLKYLKLYDCPKLKYFSEK-------GL 413 (461)
Q Consensus 358 ~~~-----~-----~~-----~~~~~~L~~L~l~~~~~l~~i~--~~~~~~~~L~~L~l~~C~~l~~~~~~-------~~ 413 (461)
... . .. ...+++|+.|+++++ .+..++ ..+..+++|+.|++++ +.++..+.. .-
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~ 478 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEG 478 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEES-CCCSSSCCSCCCSSCSSC
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCC-CccccccccccchhhhcC
Confidence 000 0 00 012345555555552 343332 1233455566666655 444432211 11
Q ss_pred cccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEe
Q 045021 414 PSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF 457 (461)
Q Consensus 414 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
+++|++|++++|. ++ ......+..+.++..+++.+|.+.
T Consensus 479 l~~L~~L~Ls~N~-l~----~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 479 LSHLQVLYLNHNY-LN----SLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp BCCEECCCCCHHH-HT----TCCTTSSSSCCSCSEEEEESCCCS
T ss_pred cccccEEECCCCc-cc----ccChhHccchhhhheeECCCCCCC
Confidence 3567777776662 11 222334566778888888888764
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.1e-25 Score=223.34 Aligned_cols=340 Identities=18% Similarity=0.226 Sum_probs=195.8
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
+++++|++.++ .+..+|. +..+++|++|++++| .+..++++..+++|++|+++++. +..++. +... ++|+.|+
T Consensus 46 ~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l--~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-LANL--TNLTGLT 118 (466)
T ss_dssp HTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTTC--TTCCEEE
T ss_pred ccccEEecCCC-CCccCcc-hhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-hcCC--CCCCEEE
Confidence 67777777764 3455654 667777777777776 45556556777777777777765 555554 3333 7777777
Q ss_pred eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV 188 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 188 (461)
++++ .++.++....+++|++|+++++. +..++ . +.. +++|+.|++.+ .+.. .+. +
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~-~~~------l~~L~~L~l~~--~~~~-~~~--~--------- 173 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNT-ISDIS--A-LSG------LTSLQQLSFGN--QVTD-LKP--L--------- 173 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCG--G-GTT------CTTCSEEEEEE--SCCC-CGG--G---------
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCc-cCCCh--h-hcc------CCcccEeecCC--cccC-chh--h---------
Confidence 7774 55565556667777777777754 33333 1 222 44677777653 2222 111 1
Q ss_pred CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021 189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS 268 (461)
Q Consensus 189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 268 (461)
..+++|+.|++.++. +..++ .+..+++|++|++++|. +...+. ++.+++|+.|++++| .+..++. ...+++|+
T Consensus 174 -~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~ 246 (466)
T 1o6v_A 174 -ANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLTNLT 246 (466)
T ss_dssp -TTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCS
T ss_pred -ccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCC-Ccccchh-hhcCCCCC
Confidence 112457777776643 33332 35566777777776653 322222 455667777777665 3333322 23345677
Q ss_pred eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021 269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD 347 (461)
Q Consensus 269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 347 (461)
+|++++|. +..++. +..+++|++|++++ .+..++....+++|++|++++|. +.... .+..+++|++|++++|
T Consensus 247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~L~~n- 319 (466)
T 1o6v_A 247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDIS---PISNLKNLTYLTLYFN- 319 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCG---GGGGCTTCSEEECCSS-
T ss_pred EEECCCCc-cccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCch---hhcCCCCCCEEECcCC-
Confidence 77776653 333333 66667777777766 55555545555667777777665 22221 2456667777777766
Q ss_pred CcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021 348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP 426 (461)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~ 426 (461)
.+..++. + ..+++|++|++++| .+..+ ..+..+++|+.|++++ +.++..+.-..+++|++|++++|+
T Consensus 320 -~l~~~~~--~------~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 -NISDISP--V------SSLTKLQRLFFYNN-KVSDV-SSLANLTNINWLSAGH-NQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp -CCSCCGG--G------GGCTTCCEEECCSS-CCCCC-GGGTTCTTCCEEECCS-SCCCBCGGGTTCTTCCEEECCCEE
T ss_pred -cCCCchh--h------ccCccCCEeECCCC-ccCCc-hhhccCCCCCEEeCCC-CccCccchhhcCCCCCEEeccCCc
Confidence 4444433 1 24556777777764 55555 3556667777777766 344444333334666777766664
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.4e-25 Score=220.78 Aligned_cols=328 Identities=17% Similarity=0.192 Sum_probs=252.3
Q ss_pred hhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCC
Q 045021 21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGT 100 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 100 (461)
+..+ ++|++|+++++ .+..++. +..+++|++|++++| .+..+++++.+++|++|++++|. +..++. +..
T Consensus 64 ~~~l----~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~-- 132 (466)
T 1o6v_A 64 VEYL----NNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITDIDP-LKN-- 132 (466)
T ss_dssp GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTT--
T ss_pred hhhh----cCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCCChH-HcC--
Confidence 5555 99999999995 4677776 999999999999997 56667668999999999999976 777765 443
Q ss_pred CCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021 101 NSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP 180 (461)
Q Consensus 101 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 180 (461)
+++|++|+++++ .++.++....+++|+.|++.+. +..++ . +.. +++|+.|++++ +.+.. ++. +.
T Consensus 133 l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~--~~~~~--~-~~~------l~~L~~L~l~~-n~l~~-~~~--l~ 196 (466)
T 1o6v_A 133 LTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQ--VTDLK--P-LAN------LTTLERLDISS-NKVSD-ISV--LA 196 (466)
T ss_dssp CTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEES--CCCCG--G-GTT------CTTCCEEECCS-SCCCC-CGG--GG
T ss_pred CCCCCEEECCCC-ccCCChhhccCCcccEeecCCc--ccCch--h-hcc------CCCCCEEECcC-CcCCC-Chh--hc
Confidence 499999999985 5666777788999999999752 23333 2 333 56899999999 56665 321 11
Q ss_pred chhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCC
Q 045021 181 ATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG 260 (461)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 260 (461)
.+++|++|++.++......+ ++.+++|++|++++| .+..++ .+..+++|+.|++++|. +..++.
T Consensus 197 ----------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~- 260 (466)
T 1o6v_A 197 ----------KLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP- 260 (466)
T ss_dssp ----------GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-
T ss_pred ----------cCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-
Confidence 22689999999964333322 677999999999987 454443 57788999999999984 444443
Q ss_pred CCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021 261 GLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR 339 (461)
Q Consensus 261 ~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 339 (461)
...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|+.|++++|. +.+.. .+..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDIS---PVSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG---GGGGCTTCC
T ss_pred hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCch---hhccCccCC
Confidence 455679999999996 4555655 88999999999999 77777766778899999999997 43333 267899999
Q ss_pred EEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 340 HLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 340 ~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
+|++++| .+..++. + ..+++|+.|++++| .+..++. +..+++|+.|++++ +.++..|.
T Consensus 335 ~L~l~~n--~l~~~~~--l------~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-n~~~~~p~ 392 (466)
T 1o6v_A 335 RLFFYNN--KVSDVSS--L------ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND-QAWTNAPV 392 (466)
T ss_dssp EEECCSS--CCCCCGG--G------TTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCC-EEEECCCB
T ss_pred EeECCCC--ccCCchh--h------ccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccC-CcccCCch
Confidence 9999998 6766643 3 36789999999996 5666544 88999999999999 66776655
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.4e-25 Score=223.75 Aligned_cols=379 Identities=17% Similarity=0.182 Sum_probs=224.2
Q ss_pred CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcc-cccCCCCcc
Q 045021 29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSL 104 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L 104 (461)
++|++|+++++. +..+ |..+..+++|++|++++| .+..+++ ++.+++|++|+++++. +..++.. +... ++|
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPL--SSL 100 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTC--TTC
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccC--CCC
Confidence 789999999854 5655 567899999999999997 5666654 8889999999999976 7777665 4444 899
Q ss_pred cEEEeeCCCCCccc---cccCCCCCccEEecccCCCceEeccCC-CcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021 105 EILKIWSCHSLPYI---ARVQLPPSLKRLDISHCDNIRTLTVED-GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP 180 (461)
Q Consensus 105 ~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 180 (461)
++|+++++ .++.+ .....+++|++|+++++..+..++ . .+.. +++|+.|++++ +.++...+ ..+.
T Consensus 101 ~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~------l~~L~~L~L~~-n~l~~~~~-~~l~ 169 (549)
T 2z81_A 101 KYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAG------LTSLNELEIKA-LSLRNYQS-QSLK 169 (549)
T ss_dssp CEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTT------CCEEEEEEEEE-TTCCEECT-TTTT
T ss_pred cEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC--Hhhhhc------ccccCeeeccC-CcccccCh-hhhh
Confidence 99999885 45432 234778899999999987666665 3 3333 56899999998 66665222 2222
Q ss_pred chhhhcccCCCCCCccEEEEecCCchhhhHH-hhcCCCccceeecccccccee---------------------------
Q 045021 181 ATLESLEVGNQPPSLKSLNVWSCSKLESIAE-RLDNNTSLEMISILWCENLKF--------------------------- 232 (461)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~--------------------------- 232 (461)
.. ++|+.|++.++. ...++. .+..+++|++|++++|.....
T Consensus 170 ~l----------~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 170 SI----------RDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp TC----------SEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred cc----------ccCceEecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 21 456667666643 233333 234566666666665532110
Q ss_pred ----cccccCCCCCccEEEecCCCCCc--cCC----CCCCCC-----------------------------CCcceEeec
Q 045021 233 ----LPSGLHNLRQLQEIQLWGCENLV--SFP----EGGLPC-----------------------------AKLSKLGIY 273 (461)
Q Consensus 233 ----~~~~~~~l~~L~~L~l~~~~~l~--~l~----~~~~~~-----------------------------~~L~~L~l~ 273 (461)
++..+..+++|+.+++++|.... .++ .....+ ++|++|+++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 11112233444444444432100 000 001112 245555555
Q ss_pred cCcccccccccc-CCCCCccEEEecc-cCCCc-----CCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 274 RCERLEALPKGL-HNLKSLKKLRIGG-KLPSL-----EEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 274 ~c~~~~~~~~~~-~~l~~L~~L~l~~-~~~~l-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
+| .++.+|..+ ..+++|++|++++ .+... ...+.+++|++|++++|..-........+..+++|++|++++|
T Consensus 319 ~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 319 NS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 53 244455443 3567777777776 43321 1124456777777777652221111123566777777777776
Q ss_pred CCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021 347 DDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP 426 (461)
Q Consensus 347 ~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~ 426 (461)
.+..+|.. + ..+++|++|+++++ .++.++..+ .++|++|++++ ++++.++. ..++|++|++++|.
T Consensus 398 --~l~~lp~~-~------~~~~~L~~L~Ls~N-~l~~l~~~~--~~~L~~L~Ls~-N~l~~~~~--~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 398 --TFHPMPDS-C------QWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSN-NNLDSFSL--FLPRLQELYISRNK 462 (549)
T ss_dssp --CCCCCCSC-C------CCCTTCCEEECTTS-CCSCCCTTS--CTTCSEEECCS-SCCSCCCC--CCTTCCEEECCSSC
T ss_pred --CCccCChh-h------cccccccEEECCCC-Ccccccchh--cCCceEEECCC-CChhhhcc--cCChhcEEECCCCc
Confidence 56666654 3 24567777777773 565554222 25677777777 46665532 34788888888874
Q ss_pred hhHHhhcccCccccccccccceEEEcccEEe
Q 045021 427 LIEEKCRKDGEQYWDLLTHIPRVRIHLPVVF 457 (461)
Q Consensus 427 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (461)
.- . -+.+..+.++..+++.+|.+.
T Consensus 463 l~-~------ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 463 LK-T------LPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CS-S------CCCGGGCTTCCEEECCSSCCC
T ss_pred cC-c------CCCcccCccCCEEecCCCccC
Confidence 22 1 122445677888888777654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.1e-25 Score=224.42 Aligned_cols=363 Identities=15% Similarity=0.134 Sum_probs=238.1
Q ss_pred cCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021 28 SCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL 104 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 104 (461)
+++|++|+++++. +..++ ..+..+++|++|++++| .+..+++ ++.+++|++|+++++. ++.+|.. . +++|
T Consensus 51 ~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~--l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--P--MASL 123 (562)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--C--CTTC
T ss_pred CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--c--cccC
Confidence 4899999999954 56664 57999999999999997 5666644 8889999999999976 8888877 3 4899
Q ss_pred cEEEeeCCCCCcccc---ccCCCCCccEEecccCCCceEeccCCCcccccccccccCc--cEEEEecCCCC--eecccCC
Q 045021 105 EILKIWSCHSLPYIA---RVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLL--EKLEIWDCPSL--TCIFSKN 177 (461)
Q Consensus 105 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~l--~~~~~~~ 177 (461)
++|+++++ .++.++ ....+++|++|+++++. +.. ..+.. +++| +.|++++ +.+ .. ....
T Consensus 124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~------l~~L~L~~L~L~~-n~l~~~~-~~~~ 189 (562)
T 3a79_B 124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ----LDLLP------VAHLHLSCILLDL-VSYHIKG-GETE 189 (562)
T ss_dssp SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT----TTTGG------GTTSCEEEEEEEE-SSCCCCS-SSCC
T ss_pred CEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc----Cchhh------hhhceeeEEEeec-ccccccc-cCcc
Confidence 99999995 566544 34778999999999864 222 22222 3345 9999998 555 33 1111
Q ss_pred CCcchh-hhcc---------------cCCCCCCccEEEEecCC----chhhhHHhhcC----------------------
Q 045021 178 ELPATL-ESLE---------------VGNQPPSLKSLNVWSCS----KLESIAERLDN---------------------- 215 (461)
Q Consensus 178 ~~~~~~-~~~~---------------~~~~~~~L~~L~l~~~~----~l~~~~~~~~~---------------------- 215 (461)
.+...- ..+. ....+++|+.+++.++. .+......+..
T Consensus 190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 111100 0000 01122456666666532 01111111122
Q ss_pred -----CCccceeeccccccceeccccc-----CCCC--------------------------CccEEEecCCCCCccCCC
Q 045021 216 -----NTSLEMISILWCENLKFLPSGL-----HNLR--------------------------QLQEIQLWGCENLVSFPE 259 (461)
Q Consensus 216 -----l~~L~~L~l~~~~~~~~~~~~~-----~~l~--------------------------~L~~L~l~~~~~l~~l~~ 259 (461)
..+|++|++++|...+.+|..+ ..++ +|+.|++++|. +.....
T Consensus 270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~ 348 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVC 348 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC
T ss_pred HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccccC
Confidence 2367777777664333555444 3333 35555555542 221111
Q ss_pred CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC----CCCCCCcceEEeecCchhhHHhhhhcccC
Q 045021 260 GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE----DGLPTNLHFLKIERNMEIWKSMIERGFHK 334 (461)
Q Consensus 260 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 334 (461)
...+++|++|++++|......|..+..+++|++|++++ .+..++. ...+++|++|++++|. +....+...+..
T Consensus 349 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 349 -PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp -CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred -ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 14566889999988765555677788889999999988 6665542 3566789999998887 332233335677
Q ss_pred CCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC--
Q 045021 335 FSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-- 411 (461)
Q Consensus 335 l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-- 411 (461)
+++|++|++++| .+. .++.. .+++|+.|+++++ .++.+|..+..+++|++|++++ ++++.+|..
T Consensus 427 l~~L~~L~l~~n--~l~~~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~ 493 (562)
T 3a79_B 427 AESILVLNLSSN--MLTGSVFRC---------LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF 493 (562)
T ss_dssp CTTCCEEECCSS--CCCGGGGSS---------CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTST
T ss_pred cccCCEEECCCC--CCCcchhhh---------hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHH
Confidence 889999999987 443 33332 3368999999984 7888887777899999999999 788888875
Q ss_pred CCcccccEeeccCCch
Q 045021 412 GLPSSLLRLYIDECPL 427 (461)
Q Consensus 412 ~~~~~L~~L~i~~c~~ 427 (461)
...++|++|+++++|.
T Consensus 494 ~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTCTTCCCEECCSCCB
T ss_pred hcCCCCCEEEecCCCc
Confidence 2268899999988763
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5e-25 Score=218.02 Aligned_cols=341 Identities=15% Similarity=0.145 Sum_probs=222.6
Q ss_pred hcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCC
Q 045021 27 LSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNS 102 (461)
Q Consensus 27 ~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~ 102 (461)
.+++|++|+++++. +..+ |..++++++|++|++++|.....+++ +..+++|++|+++++. +..+ |..+... +
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l--~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGL--A 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTC--T
T ss_pred CCCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCc--c
Confidence 45899999999954 5655 77899999999999999855445654 8889999999999977 5555 5555555 9
Q ss_pred cccEEEeeCCCCCcc-cc-c--cCCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCC
Q 045021 103 SLEILKIWSCHSLPY-IA-R--VQLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN 177 (461)
Q Consensus 103 ~L~~L~l~~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 177 (461)
+|++|+++++. ++. .+ . ...+++|++|+++++......| .. +.. +++|+.|++++ +.++. ....
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~------l~~L~~L~L~~-n~l~~-~~~~ 172 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLN------MRRFHVLDLTF-NKVKS-ICEE 172 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGGGGG------CTTCCEEECTT-CCBSC-CCTT
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCc--ccccCC------CCcccEEeCCC-Ccccc-cChh
Confidence 99999999964 443 22 2 4678999999999976333334 33 333 66899999999 67766 3333
Q ss_pred CCcchhhhcccCCCCCCccEEEEecCCchhhhHH--------hhcCCCccceeeccccccceecccccCC---CCCccEE
Q 045021 178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE--------RLDNNTSLEMISILWCENLKFLPSGLHN---LRQLQEI 246 (461)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L 246 (461)
.+... ..++|+.|++.++......+. .+..+++|++|++++|......+..+.. .++|+.|
T Consensus 173 ~l~~l--------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 173 DLLNF--------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp TSGGG--------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred hhhcc--------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 33221 013588888888543321111 2335688999999988544444443332 3789999
Q ss_pred EecCCCCCccCCC------------CCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCC
Q 045021 247 QLWGCENLVSFPE------------GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTN 311 (461)
Q Consensus 247 ~l~~~~~l~~l~~------------~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~ 311 (461)
++++|........ .....++|++|++++|......|..+..+++|++|++++ .+..++.. ..+++
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 9988743322110 111234788888888665555566777788888888877 55554332 34567
Q ss_pred cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhh
Q 045021 312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVD 390 (461)
Q Consensus 312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~ 390 (461)
|++|++++|. ++ ......+..+++|++|++++| .+..++...+ ..+++|++|++++ +.++.++ ..+..
T Consensus 325 L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~ 393 (455)
T 3v47_A 325 LLKLNLSQNF-LG-SIDSRMFENLDKLEVLDLSYN--HIRALGDQSF------LGLPNLKELALDT-NQLKSVPDGIFDR 393 (455)
T ss_dssp CCEEECCSSC-CC-EECGGGGTTCTTCCEEECCSS--CCCEECTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTT
T ss_pred CCEEECCCCc-cC-CcChhHhcCcccCCEEECCCC--cccccChhhc------cccccccEEECCC-CccccCCHhHhcc
Confidence 7777777775 22 122234566777777777776 5555533323 2456777777777 4566665 34466
Q ss_pred ccCCcEEEecC
Q 045021 391 LQNLKYLKLYD 401 (461)
Q Consensus 391 ~~~L~~L~l~~ 401 (461)
+++|++|++++
T Consensus 394 l~~L~~L~l~~ 404 (455)
T 3v47_A 394 LTSLQKIWLHT 404 (455)
T ss_dssp CTTCCEEECCS
T ss_pred CCcccEEEccC
Confidence 77777777776
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.5e-24 Score=216.68 Aligned_cols=355 Identities=14% Similarity=0.121 Sum_probs=228.7
Q ss_pred hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccc--cCcc
Q 045021 19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKS--LPEA 95 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~ 95 (461)
..+..+ ++|++|+++++. +..+ |..+.++++|++|++++| .+..+|.. .+++|++|+++++. +.. +|..
T Consensus 39 ~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~-l~~~~~p~~ 110 (520)
T 2z7x_B 39 SDILSL----SKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNA-FDALPICKE 110 (520)
T ss_dssp HHHTTC----TTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSC-CSSCCCCGG
T ss_pred hhcccc----ccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCc-cccccchhh
Confidence 456777 999999999954 5655 778999999999999997 56778877 88999999999976 554 4567
Q ss_pred cccCCCCcccEEEeeCCCCCccccccCCCCCc--cEEecccCCC--ceEeccCCCccccc--------------------
Q 045021 96 WMCGTNSSLEILKIWSCHSLPYIARVQLPPSL--KRLDISHCDN--IRTLTVEDGIQSSS-------------------- 151 (461)
Q Consensus 96 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~l~~~~~~~~~~-------------------- 151 (461)
+... ++|++|+++++ .++. .....+++| ++|+++++.. ....| ..+....
T Consensus 111 ~~~l--~~L~~L~L~~n-~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~ 184 (520)
T 2z7x_B 111 FGNM--SQLKFLGLSTT-HLEK-SSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDV 184 (520)
T ss_dssp GGGC--TTCCEEEEEES-SCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred hccC--CcceEEEecCc-ccch-hhccccccceeeEEEeeccccccccccc--ccccccccceEEEEeccCcchhhhhhh
Confidence 7666 89999999985 4443 223445666 8888887653 22223 2222100
Q ss_pred ccccccCccEEEEecCCC------CeecccC-CCCcchhhhccc---------------CCCCCCccEEEEecCCchhhh
Q 045021 152 RRYTSYLLEKLEIWDCPS------LTCIFSK-NELPATLESLEV---------------GNQPPSLKSLNVWSCSKLESI 209 (461)
Q Consensus 152 ~~~~~~~L~~L~l~~~~~------l~~~~~~-~~~~~~~~~~~~---------------~~~~~~L~~L~l~~~~~l~~~ 209 (461)
....+++|+.++++++.. +...++. ...+ .++.+.+ ....++|++|++.++...+.+
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP-KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCT-TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred hhhcccceeeccccccccccccceeecchhhhcccc-chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 000122344444443210 0000000 0000 0000000 000123455555443222123
Q ss_pred HHhh-----cCC--------------------------CccceeeccccccceecccccCCCCCccEEEecCCCCCccCC
Q 045021 210 AERL-----DNN--------------------------TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP 258 (461)
Q Consensus 210 ~~~~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 258 (461)
|..+ ..+ .+|++|+++++. +...+ ....+++|++|++++|......+
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHML-CPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCC-CCSSCCCCCEEECCSSCCCTTTT
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-ccccc-chhhCCcccEEEeECCccChhhh
Confidence 3222 333 345666665543 21111 12678999999999985544466
Q ss_pred CCCCCCCCcceEeeccCcccc--ccccccCCCCCccEEEecc-cCCC-cCCC--CCCCCcceEEeecCchhhHHhhhhcc
Q 045021 259 EGGLPCAKLSKLGIYRCERLE--ALPKGLHNLKSLKKLRIGG-KLPS-LEED--GLPTNLHFLKIERNMEIWKSMIERGF 332 (461)
Q Consensus 259 ~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~l~~L~~L~l~~-~~~~-l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~ 332 (461)
.....+++|++|++++|.... .+|..+..+++|++|++++ .+.. ++.. ..+++|++|++++|. ++...+
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~---- 416 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIF---- 416 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGG----
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchh----
Confidence 666778899999999975433 4566789999999999999 7666 6653 567899999999998 332222
Q ss_pred cCC-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc-hhhccCCcEEEecCCCCCc
Q 045021 333 HKF-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 333 ~~l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~ 406 (461)
..+ ++|++|++++| ++..+|.. + ..+++|++|+++++ .++.+|.. +..+++|++|++++ +.++
T Consensus 417 ~~l~~~L~~L~Ls~N--~l~~ip~~-~------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~-N~~~ 481 (520)
T 2z7x_B 417 RCLPPRIKVLDLHSN--KIKSIPKQ-V------VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT-NPWD 481 (520)
T ss_dssp GSCCTTCCEEECCSS--CCCCCCGG-G------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred hhhcccCCEEECCCC--cccccchh-h------hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC-CCCc
Confidence 223 79999999998 88888886 4 26789999999995 78889865 88899999999999 5544
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=206.92 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=53.9
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
++|++|+++++ .+..++. +..+++|++|++++| .+.+++.+..+++|++|++++|. +..++ .+.. +++|++|+
T Consensus 44 ~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~--l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQN--LTNLRELY 116 (347)
T ss_dssp TTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTT--CTTCSEEE
T ss_pred ccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCch-HHcC--CCcCCEEE
Confidence 66666666663 3345543 566666666666665 44555556666666666666653 44443 2222 25566666
Q ss_pred eeCCCCCccccccCCCCCccEEecccCC
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCD 136 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 136 (461)
++++ .++.++....+++|++|+++++.
T Consensus 117 l~~n-~i~~~~~~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 117 LNED-NISDISPLANLTKMYSLNLGANH 143 (347)
T ss_dssp CTTS-CCCCCGGGTTCTTCCEEECTTCT
T ss_pred CcCC-cccCchhhccCCceeEEECCCCC
Confidence 6553 34444434444555555555543
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.5e-24 Score=205.20 Aligned_cols=306 Identities=16% Similarity=0.207 Sum_probs=235.7
Q ss_pred CCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCcc
Q 045021 49 SLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLK 128 (461)
Q Consensus 49 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 128 (461)
+..+++|++|++.++ .+..++.+..+++|++|++++|. +..++. +.. +++|++|+++++ .++.++....+++|+
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~-~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP-LSN--LVKLTNLYIGTN-KITDISALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTT--CTTCCEEECCSS-CCCCCGGGTTCTTCS
T ss_pred chhcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh-hhc--CCcCCEEEccCC-cccCchHHcCCCcCC
Confidence 557889999999997 56778878889999999999975 777776 444 499999999996 677777778899999
Q ss_pred EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021 129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 208 (461)
+|+++++. +..++ . +.. +++|+.|++++|..+.. .+. + ..+++|+.|++.++. +..
T Consensus 114 ~L~l~~n~-i~~~~--~-~~~------l~~L~~L~l~~n~~~~~-~~~--~----------~~l~~L~~L~l~~~~-~~~ 169 (347)
T 4fmz_A 114 ELYLNEDN-ISDIS--P-LAN------LTKMYSLNLGANHNLSD-LSP--L----------SNMTGLNYLTVTESK-VKD 169 (347)
T ss_dssp EEECTTSC-CCCCG--G-GTT------CTTCCEEECTTCTTCCC-CGG--G----------TTCTTCCEEECCSSC-CCC
T ss_pred EEECcCCc-ccCch--h-hcc------CCceeEEECCCCCCccc-ccc--h----------hhCCCCcEEEecCCC-cCC
Confidence 99999976 44555 3 333 66899999999766654 222 1 122679999999964 333
Q ss_pred hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCC
Q 045021 209 IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNL 288 (461)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l 288 (461)
.+. +..+++|++|++++| .+..++. +..+++|+.+++++| .+..++. ...+++|++|++++| .++.++. +..+
T Consensus 170 ~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l 242 (347)
T 4fmz_A 170 VTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP-LANL 242 (347)
T ss_dssp CGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred chh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcC
Confidence 332 788999999999987 4555554 778899999999997 4444433 445679999999996 4555655 8899
Q ss_pred CCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021 289 KSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP 367 (461)
Q Consensus 289 ~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~ 367 (461)
++|++|++++ .+..++....+++|++|++++|. +... ..+..+++|++|++++| .+...+...++ .+
T Consensus 243 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n--~l~~~~~~~l~------~l 310 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNN--QLGNEDMEVIG------GL 310 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS--CCCGGGHHHHH------TC
T ss_pred CCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCC--cCCCcChhHhh------cc
Confidence 9999999999 77777767788999999999997 4322 24788999999999998 66655544243 57
Q ss_pred CCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc
Q 045021 368 ASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~ 406 (461)
++|++|++++| .+..++. +..+++|++|++++ +.++
T Consensus 311 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~-N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQN-HITDIRP-LASLSKMDSADFAN-QVIK 346 (347)
T ss_dssp TTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSC-C---
T ss_pred ccCCEEEccCC-ccccccC-hhhhhccceeehhh-hccc
Confidence 89999999996 5777654 78999999999999 4443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=3.6e-24 Score=210.70 Aligned_cols=325 Identities=26% Similarity=0.295 Sum_probs=176.0
Q ss_pred hhhhhhhcCCccEEEecCCcCCccccccCCCCCCc-------------CEEEecCCcCcccccCCCCCCCccEEEEeecC
Q 045021 21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSL-------------REIEICRCHSLVSFPEVALPSKLKKIEIRECD 87 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~ 87 (461)
++++ ++|++|+++++.-...+|..++.+++| ++|++++| .+..+|. .+++|++|+++++.
T Consensus 30 i~~L----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 30 AENV----KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE--LPPHLESLVASCNS 102 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS--CCTTCSEEECCSSC
T ss_pred Hhcc----cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC--CcCCCCEEEccCCc
Confidence 5555 666666666644323556666666553 66666665 3555554 24566677666644
Q ss_pred CccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecC
Q 045021 88 ALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDC 167 (461)
Q Consensus 88 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 167 (461)
++.+|.. .++|+.|+++++ .++.++. ..++|++|+++++. ++.+| . +.. +++|+.|++++
T Consensus 103 -l~~lp~~-----~~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L~~n~-l~~lp--~-~~~------l~~L~~L~l~~- 162 (454)
T 1jl5_A 103 -LTELPEL-----PQSLKSLLVDNN-NLKALSD--LPPLLEYLGVSNNQ-LEKLP--E-LQN------SSFLKIIDVDN- 162 (454)
T ss_dssp -CSSCCCC-----CTTCCEEECCSS-CCSCCCS--CCTTCCEEECCSSC-CSSCC--C-CTT------CTTCCEEECCS-
T ss_pred -CCccccc-----cCCCcEEECCCC-ccCcccC--CCCCCCEEECcCCC-CCCCc--c-cCC------CCCCCEEECCC-
Confidence 5555532 156666666663 4444332 12566666666653 33344 2 322 44666666666
Q ss_pred CCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEE
Q 045021 168 PSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQ 247 (461)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 247 (461)
++++. +|... ++|++|++.++ .+..++ .+..+++|++|++++| .+..+|... ++|+.|+
T Consensus 163 N~l~~-lp~~~--------------~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 163 NSLKK-LPDLP--------------PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIV 221 (454)
T ss_dssp SCCSC-CCCCC--------------TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC---TTCCEEE
T ss_pred CcCcc-cCCCc--------------ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cCCcCCCCc---CcccEEE
Confidence 45544 33211 24666666664 333344 4566666666666665 233333322 4666666
Q ss_pred ecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHH
Q 045021 248 LWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKS 326 (461)
Q Consensus 248 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 326 (461)
+++| .+..++. ...+++|++|++++| .++.+|. .+++|++|++++ .+..++. .+++|++|++++|. +..
T Consensus 222 l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~-l~~- 291 (454)
T 1jl5_A 222 AGNN-ILEELPE-LQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENI-FSG- 291 (454)
T ss_dssp CCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSE-
T ss_pred CcCC-cCCcccc-cCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCcccccCc--ccCcCCEEECcCCc-cCc-
Confidence 6665 3445553 444556666666664 3344443 235666666666 5554443 23566666666665 211
Q ss_pred hhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCc
Q 045021 327 MIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 327 ~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~ 406 (461)
.+ ...++|++|++++| .+..++. .+++|++|++++ +.+..+|.. +++|++|++++ ++++
T Consensus 292 l~----~~~~~L~~L~l~~N--~l~~i~~----------~~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~-N~l~ 350 (454)
T 1jl5_A 292 LS----ELPPNLYYLNASSN--EIRSLCD----------LPPSLEELNVSN-NKLIELPAL---PPRLERLIASF-NHLA 350 (454)
T ss_dssp ES----CCCTTCCEEECCSS--CCSEECC----------CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCS
T ss_pred cc----CcCCcCCEEECcCC--cCCcccC----------CcCcCCEEECCC-Ccccccccc---CCcCCEEECCC-Cccc
Confidence 00 11246666666665 4444332 335777777777 456666533 46777777777 5666
Q ss_pred ccCCCCCcccccEeeccCCc
Q 045021 407 YFSEKGLPSSLLRLYIDECP 426 (461)
Q Consensus 407 ~~~~~~~~~~L~~L~i~~c~ 426 (461)
.+|. .+++|++|++++|.
T Consensus 351 ~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 351 EVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCCC--CCTTCCEEECCSSC
T ss_pred cccc--hhhhccEEECCCCC
Confidence 6666 45777777777764
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.1e-24 Score=211.42 Aligned_cols=358 Identities=16% Similarity=0.141 Sum_probs=243.0
Q ss_pred EEEecCCcCCccccccCCCCCCcCEEEecCCcCcccc-cC-CCCCCCccEEEEeecCCccccCcc-cccCCCCcccEEEe
Q 045021 33 YLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSF-PE-VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLEILKI 109 (461)
Q Consensus 33 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l 109 (461)
.++.++ .++..+|. +. ++|++|++++| .+..+ |. ++.+++|++|+++++.....++.. +.. +++|++|++
T Consensus 14 ~~~c~~-~~l~~lp~-l~--~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~L 86 (455)
T 3v47_A 14 NAICIN-RGLHQVPE-LP--AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKL 86 (455)
T ss_dssp EEECCS-SCCSSCCC-CC--TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--CTTCCEEEC
T ss_pred ccCcCC-CCcccCCC-CC--CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccc--cccCCEEeC
Confidence 445554 45677777 33 79999999997 55656 33 889999999999998744455544 433 499999999
Q ss_pred eCCCCCccc-cc-cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcc
Q 045021 110 WSCHSLPYI-AR-VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLE 187 (461)
Q Consensus 110 ~~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 187 (461)
+++. ++.. +. ...+++|++|+++++......+....+.. +++|+.|++++ +.++.+.+...+...
T Consensus 87 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~------l~~L~~L~L~~-n~l~~~~~~~~~~~l----- 153 (455)
T 3v47_A 87 DYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP------LTSLEMLVLRD-NNIKKIQPASFFLNM----- 153 (455)
T ss_dssp TTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT------CTTCCEEECCS-SBCCSCCCCGGGGGC-----
T ss_pred CCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccC------cccCCEEECCC-CccCccCcccccCCC-----
Confidence 9964 5554 33 37789999999999863322231112333 56899999998 666652232222222
Q ss_pred cCCCCCCccEEEEecCCchhhhHHhhcCC--Cccceeeccccccceeccc--------ccCCCCCccEEEecCCCCCccC
Q 045021 188 VGNQPPSLKSLNVWSCSKLESIAERLDNN--TSLEMISILWCENLKFLPS--------GLHNLRQLQEIQLWGCENLVSF 257 (461)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~--------~~~~l~~L~~L~l~~~~~l~~l 257 (461)
++|++|++.++......+..+..+ .+|+.|+++++......+. .+..+++|+.|++++|......
T Consensus 154 -----~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 154 -----RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp -----TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred -----CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 679999998865444444444443 6889999988743322111 2335678999999998433322
Q ss_pred CCC---CCCCCCcceEeeccCccccccc----------cccC--CCCCccEEEecc-cCCCcCCC--CCCCCcceEEeec
Q 045021 258 PEG---GLPCAKLSKLGIYRCERLEALP----------KGLH--NLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIER 319 (461)
Q Consensus 258 ~~~---~~~~~~L~~L~l~~c~~~~~~~----------~~~~--~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~ 319 (461)
+.. ....++|+.|++++|....... ..+. ..++|++|++++ .+..+... ..+++|++|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 221 1122589999998875332110 0111 236899999999 66554332 5678999999999
Q ss_pred CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEE
Q 045021 320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLK 398 (461)
Q Consensus 320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~ 398 (461)
|. +.. .....+..+++|++|++++| .+..++...+ ..+++|++|+++++ .+..+ +..+..+++|++|+
T Consensus 309 n~-l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 309 NE-INK-IDDNAFWGLTHLLKLNLSQN--FLGSIDSRMF------ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp SC-CCE-ECTTTTTTCTTCCEEECCSS--CCCEECGGGG------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred Cc-ccc-cChhHhcCcccCCEEECCCC--ccCCcChhHh------cCcccCCEEECCCC-cccccChhhccccccccEEE
Confidence 97 332 22335778999999999998 7777755434 36789999999995 66665 57788999999999
Q ss_pred ecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021 399 LYDCPKLKYFSEKGL--PSSLLRLYIDECPL 427 (461)
Q Consensus 399 l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~ 427 (461)
+++ ++++.++...+ .++|++|++++|+.
T Consensus 378 L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 378 LDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCC-CccccCCHhHhccCCcccEEEccCCCc
Confidence 999 78998887533 68999999998753
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.6e-23 Score=203.57 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=165.2
Q ss_pred CcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021 54 SLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK 128 (461)
Q Consensus 54 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 128 (461)
++++|+++++ .+..+++ +..+++|++|+++++. +..+ |..+... ++|+.|+++++ .++.++.. ..+++|+
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNL--FNLRTLGLRSN-RLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCSCCTTSSTTCTTCC
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCC--ccCCEEECCCC-cCCccCcccccCCCCCC
Confidence 4444444443 2333322 4444444444444432 3333 2222222 44444444442 23333321 3345555
Q ss_pred EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021 129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 208 (461)
+|+++++......+ ..+.. +++|+.|++++ +.+.. ++...+... ++|+.|++.++.....
T Consensus 108 ~L~Ls~n~i~~~~~--~~~~~------l~~L~~L~l~~-n~l~~-~~~~~~~~l----------~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 108 KLDISENKIVILLD--YMFQD------LYNLKSLEVGD-NDLVY-ISHRAFSGL----------NSLEQLTLEKCNLTSI 167 (477)
T ss_dssp EEECTTSCCCEECT--TTTTT------CTTCCEEEECC-TTCCE-ECTTSSTTC----------TTCCEEEEESCCCSSC
T ss_pred EEECCCCccccCCh--hHccc------cccCCEEECCC-Cccce-eChhhccCC----------CCCCEEECCCCcCccc
Confidence 55555544222223 33333 44666677666 55555 333333222 5677777777533322
Q ss_pred hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCC
Q 045021 209 IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHN 287 (461)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~ 287 (461)
.+..+..+++|+.|++.++......+..+..+++|+.|++++|..+..++.......+|++|++++| .++.+| ..+..
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~ 246 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRH 246 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcC
Confidence 3346777788888888876444444456777888888888887777776665555557888888875 455555 36777
Q ss_pred CCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021 288 LKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL 364 (461)
Q Consensus 288 l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~ 364 (461)
+++|++|++++ .+..++.. ..+++|++|++++|. +.. .....+..+++|++|++++| .+..++...+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~------ 316 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAV-VEPYAFRGLNYLRVLNVSGN--QLTTLEESVF------ 316 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSE-ECTTTBTTCTTCCEEECCSS--CCSCCCGGGB------
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cce-ECHHHhcCcccCCEEECCCC--cCceeCHhHc------
Confidence 88888888887 66555543 445678888888776 222 22234677788888888887 6777766533
Q ss_pred CCCCCcceeecCCC
Q 045021 365 PLPASLASLTIGDF 378 (461)
Q Consensus 365 ~~~~~L~~L~l~~~ 378 (461)
..+++|++|+++++
T Consensus 317 ~~l~~L~~L~l~~N 330 (477)
T 2id5_A 317 HSVGNLETLILDSN 330 (477)
T ss_dssp SCGGGCCEEECCSS
T ss_pred CCCcccCEEEccCC
Confidence 24567888888874
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.1e-23 Score=207.15 Aligned_cols=346 Identities=25% Similarity=0.265 Sum_probs=240.3
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCc-------------cEEEEeecCCccccCc
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKL-------------KKIEIRECDALKSLPE 94 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L-------------~~L~l~~~~~l~~~~~ 94 (461)
.+|++|++++ ..+..+|..++++++|++|++++|.....+|. ++.+.+| ++|+++++. ++.+|.
T Consensus 11 ~~L~~L~l~~-n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHS-SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred ccchhhhccc-CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 8899999998 45689999999999999999999864446776 7777765 999999976 777776
Q ss_pred ccccCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecc
Q 045021 95 AWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIF 174 (461)
Q Consensus 95 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 174 (461)
. .++|+.|+++++ .++.++. .+++|++|+++++. +..++ ... ++|+.|++++ +.++. +
T Consensus 89 ~-----~~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~--~~~---------~~L~~L~L~~-n~l~~-l 146 (454)
T 1jl5_A 89 L-----PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALS--DLP---------PLLEYLGVSN-NQLEK-L 146 (454)
T ss_dssp C-----CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC--SCC---------TTCCEEECCS-SCCSS-C
T ss_pred C-----cCCCCEEEccCC-cCCcccc--ccCCCcEEECCCCc-cCccc--CCC---------CCCCEEECcC-CCCCC-C
Confidence 3 278999999884 6666653 45899999999864 44444 211 3799999999 67776 5
Q ss_pred cCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCC
Q 045021 175 SKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENL 254 (461)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 254 (461)
|. +... ++|++|+++++ .+..++. ...+|++|++++| .+..+| .++.+++|+.|++++| .+
T Consensus 147 p~--~~~l----------~~L~~L~l~~N-~l~~lp~---~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N-~l 207 (454)
T 1jl5_A 147 PE--LQNS----------SFLKIIDVDNN-SLKKLPD---LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN-SL 207 (454)
T ss_dssp CC--CTTC----------TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CC
T ss_pred cc--cCCC----------CCCCEEECCCC-cCcccCC---CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC-cC
Confidence 52 3222 68999999996 4544543 2469999999987 555566 5899999999999998 45
Q ss_pred ccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhccc
Q 045021 255 VSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFH 333 (461)
Q Consensus 255 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 333 (461)
..++... ++|++|++++| .++.+|. ++.+++|++|++++ .+..++. .+++|++|++++|. +.. .+ .
T Consensus 208 ~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~-l~~-l~----~ 274 (454)
T 1jl5_A 208 KKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNY-LTD-LP----E 274 (454)
T ss_dssp SSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSC-CSC-CC----C
T ss_pred CcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCc-ccc-cC----c
Confidence 5555432 48999999997 5567874 89999999999999 7777764 45899999999997 332 11 2
Q ss_pred CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC
Q 045021 334 KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL 413 (461)
Q Consensus 334 ~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~ 413 (461)
.+++|++|++++| .+..++. .+++|+.|+++++ .+..++. ..++|++|++++ ++++.+|..
T Consensus 275 ~~~~L~~L~ls~N--~l~~l~~----------~~~~L~~L~l~~N-~l~~i~~---~~~~L~~L~Ls~-N~l~~lp~~-- 335 (454)
T 1jl5_A 275 LPQSLTFLDVSEN--IFSGLSE----------LPPNLYYLNASSN-EIRSLCD---LPPSLEELNVSN-NKLIELPAL-- 335 (454)
T ss_dssp CCTTCCEEECCSS--CCSEESC----------CCTTCCEEECCSS-CCSEECC---CCTTCCEEECCS-SCCSCCCCC--
T ss_pred ccCcCCEEECcCC--ccCcccC----------cCCcCCEEECcCC-cCCcccC---CcCcCCEEECCC-Ccccccccc--
Confidence 3479999999998 6666654 4479999999994 6766642 125999999999 788887663
Q ss_pred cccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEec
Q 045021 414 PSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFD 458 (461)
Q Consensus 414 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (461)
+++|++|++++|..- . ... ...++..+++.++.+..
T Consensus 336 ~~~L~~L~L~~N~l~-~----lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-E----VPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCS-C----CCC----CCTTCCEEECCSSCCSS
T ss_pred CCcCCEEECCCCccc-c----ccc----hhhhccEEECCCCCCCc
Confidence 589999999998422 1 111 24667777777766543
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.9e-22 Score=207.92 Aligned_cols=371 Identities=19% Similarity=0.207 Sum_probs=218.0
Q ss_pred cCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021 28 SCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL 104 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 104 (461)
++++++|+|++ +.++.++ ..|.++++|++|+|++| .+..+++ ++.+++|++|+++++. ++.+|..++.. +++|
T Consensus 51 p~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~-L~~L 126 (635)
T 4g8a_A 51 PFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-LSSL 126 (635)
T ss_dssp CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-CTTC
T ss_pred CcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-CCCC
Confidence 36788888887 5567765 46888888888888886 5666665 6778888888888865 77777654432 3788
Q ss_pred cEEEeeCCCCCcccccc--CCCCCccEEecccCCCceE--eccCCCcccccccccccCccEEEEecCCCCeecccCCCCc
Q 045021 105 EILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRT--LTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELP 180 (461)
Q Consensus 105 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 180 (461)
++|+++++ .++.++.. +.+++|++|+++++. +.. +| ..+.. +++|+.|++++ +.++. ++...+.
T Consensus 127 ~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~--~~~~~------l~~L~~L~L~~-N~l~~-~~~~~l~ 194 (635)
T 4g8a_A 127 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLP--EYFSN------LTNLEHLDLSS-NKIQS-IYCTDLR 194 (635)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC--GGGGG------CTTCCEEECCS-SCCCE-ECGGGGH
T ss_pred CEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCc--hhhcc------chhhhhhcccC-ccccc-ccccccc
Confidence 88888874 56665543 667888888888764 222 23 33333 45677777777 55544 2111100
Q ss_pred ch----------------hhhcccC-CCCCCccEEEEecCCc--------------------------------------
Q 045021 181 AT----------------LESLEVG-NQPPSLKSLNVWSCSK-------------------------------------- 205 (461)
Q Consensus 181 ~~----------------~~~~~~~-~~~~~L~~L~l~~~~~-------------------------------------- 205 (461)
.. +..+..+ .....++.+.+.++..
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 00 0000000 0000111111111100
Q ss_pred -------------------------------------------hhhhHHhhcCCCccceeecccccccee----------
Q 045021 206 -------------------------------------------LESIAERLDNNTSLEMISILWCENLKF---------- 232 (461)
Q Consensus 206 -------------------------------------------l~~~~~~~~~l~~L~~L~l~~~~~~~~---------- 232 (461)
+..+. .+....+|+.|++.++.....
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~ 353 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 353 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhh
Confidence 00000 111223344444433311000
Q ss_pred ---------cccccCCCCCccEEEecCCCCC-------------------------ccCCCCCCCCCCcceEeeccCccc
Q 045021 233 ---------LPSGLHNLRQLQEIQLWGCENL-------------------------VSFPEGGLPCAKLSKLGIYRCERL 278 (461)
Q Consensus 233 ---------~~~~~~~l~~L~~L~l~~~~~l-------------------------~~l~~~~~~~~~L~~L~l~~c~~~ 278 (461)
.+.....+++|+.++++.+... ...+.....++.|+.+++.++...
T Consensus 354 l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 354 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred cccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 0111224566777777665321 111222333456666666655444
Q ss_pred cccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccC
Q 045021 279 EALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFP 354 (461)
Q Consensus 279 ~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~ 354 (461)
...+ ..+..+++++.++++. .+..+... ..+++++.|++++|...... ....+..+++|++|++++| ++..++
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N--~L~~l~ 510 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC--QLEQLS 510 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS--CCCEEC
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC--ccCCcC
Confidence 3332 2456677777777777 44433322 45678999999988754432 2335788899999999998 787776
Q ss_pred ccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC---cccccEeeccCCc
Q 045021 355 PEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL---PSSLLRLYIDECP 426 (461)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~---~~~L~~L~i~~c~ 426 (461)
...+ ..+++|++|++++ +.+..++ ..+..+++|++|++++ ++++.++...+ +++|++|+++++|
T Consensus 511 ~~~f------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 511 PTAF------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTTT------TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred hHHH------cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 6545 3678999999999 5777775 5678899999999999 88888876433 5789999998765
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=8.9e-23 Score=200.99 Aligned_cols=317 Identities=16% Similarity=0.183 Sum_probs=220.7
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG 99 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 99 (461)
.++.+ ++|++|+++++ .+..+| .++.+++|++|++++| .+..+| ++.+++|++|+++++. ++.++ +..
T Consensus 37 ~~~~l----~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~- 104 (457)
T 3bz5_A 37 SEEQL----ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTP- 104 (457)
T ss_dssp EHHHH----TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTT-
T ss_pred ChhHc----CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCC-
Confidence 35566 99999999985 567777 5889999999999997 567675 8889999999999976 77665 333
Q ss_pred CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021 100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL 179 (461)
Q Consensus 100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 179 (461)
+++|++|+++++ .++.++ ...+++|++|+++++. ++.++ +.. +++|+.|+++++..+.. ++...
T Consensus 105 -l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~-l~~l~----l~~------l~~L~~L~l~~n~~~~~-~~~~~- 168 (457)
T 3bz5_A 105 -LTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNT-LTEID----VSH------NTQLTELDCHLNKKITK-LDVTP- 168 (457)
T ss_dssp -CTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSC-CSCCC----CTT------CTTCCEEECTTCSCCCC-CCCTT-
T ss_pred -CCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCc-cceec----ccc------CCcCCEEECCCCCcccc-ccccc-
Confidence 389999999985 566664 6778899999999865 33333 112 45788888888655554 32111
Q ss_pred cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021 180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE 259 (461)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 259 (461)
+++|+.|+++++ .++.++ +..+++|++|++++| .+..+ .++.+++|+.|++++| .+..++
T Consensus 169 ------------l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip- 228 (457)
T 3bz5_A 169 ------------QTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID- 228 (457)
T ss_dssp ------------CTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC-
T ss_pred ------------CCcCCEEECCCC-ccceec--cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC-
Confidence 156888888885 444454 677888888888876 34433 3677788888888887 455565
Q ss_pred CCCCCCCcceEeeccCccccccccccCCCCCccEEEecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcC
Q 045021 260 GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR 339 (461)
Q Consensus 260 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 339 (461)
...+++|++|++++| .++.+| ++.+++|+.|++++ .+|+.|++++|.... .. .+..+++|+
T Consensus 229 -~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~-----------n~L~~L~l~~n~~~~-~~---~~~~l~~L~ 289 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQ-----------TDLLEIDLTHNTQLI-YF---QAEGCRKIK 289 (457)
T ss_dssp -CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTT-----------CCCSCCCCTTCTTCC-EE---ECTTCTTCC
T ss_pred -ccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccC-----------CCCCEEECCCCccCC-cc---cccccccCC
Confidence 445668888888875 444444 55677888877643 356667777776332 12 246778899
Q ss_pred EEEEecCCCcccccCccccc-cC-CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021 340 HLTIEGCDDDMVSFPPEDRR-LG-TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS 409 (461)
Q Consensus 340 ~L~l~~~~~~~~~i~~~~~~-~~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~ 409 (461)
.|++++| ...+.++.. .. .. -.....++|++|++++ +.++.++ +..+++|+.|++++ ++++.++
T Consensus 290 ~L~Ls~n-~~l~~l~~~-~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l~ 355 (457)
T 3bz5_A 290 ELDVTHN-TQLYLLDCQ-AAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDFS 355 (457)
T ss_dssp CCCCTTC-TTCCEEECT-TCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBCT
T ss_pred EEECCCC-cccceeccC-CCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCcc
Confidence 9999987 445555432 10 00 0112446888888888 4677763 78899999999999 7887654
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8.5e-23 Score=207.35 Aligned_cols=355 Identities=16% Similarity=0.139 Sum_probs=232.2
Q ss_pred hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccC--cc
Q 045021 19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLP--EA 95 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~ 95 (461)
..+..+ ++|++|+++++ .+..+ |..+.++++|++|++++| .+..+|.. .+++|++|+++++. +..++ ..
T Consensus 70 ~~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~ 141 (562)
T 3a79_B 70 PDISFL----SELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFND-FDVLPVCKE 141 (562)
T ss_dssp GGTTTC----TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSC-CSBCCCCGG
T ss_pred hhhccC----CCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCC-ccccCchHh
Confidence 457777 99999999995 45666 678999999999999997 57788877 89999999999976 77654 56
Q ss_pred cccCCCCcccEEEeeCCCCCccccccCCCCCc--cEEecccCCC--ceEeccCCCccccc--------------------
Q 045021 96 WMCGTNSSLEILKIWSCHSLPYIARVQLPPSL--KRLDISHCDN--IRTLTVEDGIQSSS-------------------- 151 (461)
Q Consensus 96 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~l~~~~~~~~~~-------------------- 151 (461)
+... ++|++|+++++ .++.. ....+++| +.|+++++.. ....+ ..+....
T Consensus 142 ~~~l--~~L~~L~L~~n-~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~--~~l~~l~~~~l~l~l~~n~~~~~~~~~ 215 (562)
T 3a79_B 142 FGNL--TKLTFLGLSAA-KFRQL-DLLPVAHLHLSCILLDLVSYHIKGGET--ESLQIPNTTVLHLVFHPNSLFSVQVNM 215 (562)
T ss_dssp GGGC--TTCCEEEEECS-BCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSC--CEEEECCEEEEEEEECSSSCCCCCCEE
T ss_pred hccc--CcccEEecCCC-ccccC-chhhhhhceeeEEEeecccccccccCc--ccccccCcceEEEEecCccchhhhhhh
Confidence 6665 99999999984 44432 22334455 9999998753 11112 2211100
Q ss_pred ccccccCccEEEEecCC-----------------CCeec-ccCCCCcc-hhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021 152 RRYTSYLLEKLEIWDCP-----------------SLTCI-FSKNELPA-TLESLEVGNQPPSLKSLNVWSCSKLESIAER 212 (461)
Q Consensus 152 ~~~~~~~L~~L~l~~~~-----------------~l~~~-~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 212 (461)
....+++|+.+++++.. .++.+ +....+.. .+..+......++|++|++.++...+.+|..
T Consensus 216 ~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 295 (562)
T 3a79_B 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295 (562)
T ss_dssp EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCC
T ss_pred cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccch
Confidence 00113356666666521 00000 00000000 0000000001125666666664322233322
Q ss_pred h-----cCC--------------------------CccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCC
Q 045021 213 L-----DNN--------------------------TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGG 261 (461)
Q Consensus 213 ~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 261 (461)
+ ..+ .+|++|+++++.. ...+ ....+++|++|++++|......+...
T Consensus 296 ~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMV-CPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-cccc-CccCCCCceEEECCCCccccchhhhh
Confidence 2 122 3466666666532 1111 12678999999999985544466666
Q ss_pred CCCCCcceEeeccCccccc---cccccCCCCCccEEEecc-cCCC-cCCC--CCCCCcceEEeecCchhhHHhhhhcccC
Q 045021 262 LPCAKLSKLGIYRCERLEA---LPKGLHNLKSLKKLRIGG-KLPS-LEED--GLPTNLHFLKIERNMEIWKSMIERGFHK 334 (461)
Q Consensus 262 ~~~~~L~~L~l~~c~~~~~---~~~~~~~l~~L~~L~l~~-~~~~-l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 334 (461)
..+++|++|++++| .++. +|..+..+++|++|++++ .+.. ++.. ..+++|++|++++|. +++.. ...
T Consensus 374 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~ 447 (562)
T 3a79_B 374 STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSV----FRC 447 (562)
T ss_dssp CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG----GSS
T ss_pred cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcch----hhh
Confidence 77889999999996 4444 345689999999999999 6665 6653 556899999999998 33222 234
Q ss_pred C-CCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccc-hhhccCCcEEEecCCCCCc
Q 045021 335 F-SSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 335 l-~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~ 406 (461)
+ ++|++|++++| ++..+|.. . ..+++|++|++++ +.++.+|.. +..+++|+.|++++ +.+.
T Consensus 448 l~~~L~~L~L~~N--~l~~ip~~-~------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~-N~~~ 510 (562)
T 3a79_B 448 LPPKVKVLDLHNN--RIMSIPKD-V------THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD-NPWD 510 (562)
T ss_dssp CCTTCSEEECCSS--CCCCCCTT-T------TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCS-CCBC
T ss_pred hcCcCCEEECCCC--cCcccChh-h------cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecC-CCcC
Confidence 4 69999999998 88888886 3 2678999999999 588899866 88999999999999 4443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5e-23 Score=199.40 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=189.3
Q ss_pred CCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCcccccc--CCCC
Q 045021 51 SLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIARV--QLPP 125 (461)
Q Consensus 51 ~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~ 125 (461)
.++++++|+++++ .+..+|. +..+++|++|+++++. +..++. .+... ++|++|+++++ .++.++.. ..++
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA--HTIQKLYMGFN-AIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCC--CCcCEEECCCC-CCCcCCHHHhcCCC
Confidence 4567788888775 4666766 5667788888887765 565554 33333 67777777764 34443322 4455
Q ss_pred CccEEecccCCCceEeccCCCc-ccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC
Q 045021 126 SLKRLDISHCDNIRTLTVEDGI-QSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS 204 (461)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (461)
+|++|+++++. +..+| ... .. .++|+.|++++ +.++.
T Consensus 118 ~L~~L~L~~n~-l~~l~--~~~~~~------l~~L~~L~L~~-n~l~~-------------------------------- 155 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLP--RGIFHN------TPKLTTLSMSN-NNLER-------------------------------- 155 (390)
T ss_dssp TCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCCB--------------------------------
T ss_pred CCCEEECCCCc-cCcCC--HHHhcC------CCCCcEEECCC-CccCc--------------------------------
Confidence 66666666543 33343 322 12 33455555544 33333
Q ss_pred chhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccc
Q 045021 205 KLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKG 284 (461)
Q Consensus 205 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 284 (461)
..+..+..+++|++|++++|. +..+ .+..+++|+.+++++| .+..++ ..++|++|++++| .+..+|.
T Consensus 156 ---~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l~~n-~l~~~~~- 222 (390)
T 3o6n_A 156 ---IEDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHN-SINVVRG- 222 (390)
T ss_dssp ---CCTTTTSSCTTCCEEECCSSC-CSBC--CGGGCTTCSEEECCSS-CCSEEE----CCSSCSEEECCSS-CCCEEEC-
T ss_pred ---cChhhccCCCCCCEEECCCCc-CCcc--ccccccccceeecccc-cccccC----CCCcceEEECCCC-eeeeccc-
Confidence 222344555566666665542 2222 1344566666666665 223221 1236677777664 3333332
Q ss_pred cCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCC
Q 045021 285 LHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTT 363 (461)
Q Consensus 285 ~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~ 363 (461)
...++|++|++++ .+...+....+++|++|++++|. +... ....+..+++|++|++++| .+..++.. .
T Consensus 223 -~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n--~l~~~~~~-~----- 291 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNN--RLVALNLY-G----- 291 (390)
T ss_dssp -CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECCSS--CCCEEECS-S-----
T ss_pred -cccccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCc-ChhHccccccCCEEECCCC--cCcccCcc-c-----
Confidence 2346777777777 55555555566788888888886 3222 2235778999999999998 77777664 3
Q ss_pred CCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 364 LPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 364 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
..+++|++|+++++ .+..++..+..+++|++|++++ +.++.++.. .+++|++|++++++.
T Consensus 292 -~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~-~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 292 -QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLKLS-THHTLKNLTLSHNDW 351 (390)
T ss_dssp -SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCCCC-TTCCCSEEECCSSCE
T ss_pred -CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-CccceeCch-hhccCCEEEcCCCCc
Confidence 35779999999995 7888888888999999999999 678888753 358999999999875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=200.30 Aligned_cols=310 Identities=20% Similarity=0.223 Sum_probs=197.6
Q ss_pred CEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEec
Q 045021 56 REIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDI 132 (461)
Q Consensus 56 ~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l 132 (461)
+.++.++. .+..+|. ...+++++|+++++. ++.++. .+... ++|++|+++++ .++.+.. ...+++|++|++
T Consensus 14 ~~v~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPE-GIPTETRLLDLGKNR-IKTLNQDEFASF--PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSC-CCSSCCS-CCCTTCSEEECCSSC-CCEECTTTTTTC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcCcCCC-CCCCCCcEEECCCCc-cceECHhHccCC--CCCCEEECCCC-ccCEeChhhhhCCccCCEEEC
Confidence 45666553 5666764 345788999999865 776654 34333 88999999885 5555533 266788888888
Q ss_pred ccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHH
Q 045021 133 SHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAE 211 (461)
Q Consensus 133 ~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 211 (461)
+++. +..++ .. +.. +++|+.|++++ +.+.. .....+... ++|+.|++.++......+.
T Consensus 88 ~~n~-l~~~~--~~~~~~------l~~L~~L~Ls~-n~i~~-~~~~~~~~l----------~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 88 RSNR-LKLIP--LGVFTG------LSNLTKLDISE-NKIVI-LLDYMFQDL----------YNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CSSC-CCSCC--TTSSTT------CTTCCEEECTT-SCCCE-ECTTTTTTC----------TTCCEEEECCTTCCEECTT
T ss_pred CCCc-CCccC--cccccC------CCCCCEEECCC-Ccccc-CChhHcccc----------ccCCEEECCCCccceeChh
Confidence 8864 45555 33 223 55788888887 66666 333333322 5788888877543333344
Q ss_pred hhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCC
Q 045021 212 RLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLK 289 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~ 289 (461)
.+..+++|++|++++| .+..++ ..+..+++|+.|++++|. +..++. ....+++|++|++++|.....++.......
T Consensus 147 ~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp SSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 6777788888888876 343333 456777888888888763 333333 445566788888887777776666555566
Q ss_pred CccEEEecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCC
Q 045021 290 SLKKLRIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPL 366 (461)
Q Consensus 290 ~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~ 366 (461)
+|++|++++ .+..++. ...+++|++|++++|. +. ......+..+++|++|++++| .+..+....+ ..
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~ 294 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-IS-TIEGSMLHELLRLQEIQLVGG--QLAVVEPYAF------RG 294 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CC-EECTTSCTTCTTCCEEECCSS--CCSEECTTTB------TT
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCc-CC-ccChhhccccccCCEEECCCC--ccceECHHHh------cC
Confidence 777777777 6666653 2455677777777776 22 222234566777777777776 5555544323 25
Q ss_pred CCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCc
Q 045021 367 PASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 367 ~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~ 406 (461)
+++|+.|+++++ .++.++ ..+..+++|++|++.+ +.++
T Consensus 295 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~ 333 (477)
T 2id5_A 295 LNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS-NPLA 333 (477)
T ss_dssp CTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS-SCEE
T ss_pred cccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC-CCcc
Confidence 567777777773 566665 3456677777777777 4443
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=3.2e-22 Score=206.19 Aligned_cols=378 Identities=16% Similarity=0.155 Sum_probs=231.4
Q ss_pred cCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcc
Q 045021 40 KGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPY 117 (461)
Q Consensus 40 ~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 117 (461)
.+++.+|..++ +++++|+|+++ .++.+++ +..+++|++|++++|. ++.+++..+.. +++|++|+++++ .++.
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~-L~~L~~L~Ls~N-~l~~ 114 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-LSHLSTLILTGN-PIQS 114 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-CTTCCEEECTTC-CCCE
T ss_pred CCcCccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcC-CCCCCEEEccCC-cCCC
Confidence 35678887665 58999999996 6888876 8899999999999976 88887764432 499999999995 6777
Q ss_pred cccc--CCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCC
Q 045021 118 IARV--QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPS 194 (461)
Q Consensus 118 ~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (461)
++.. ..+++|++|+++++. ++.++ .. +.. +++|+.|++++ +.++. ++...... .+++
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~-l~~l~--~~~~~~------L~~L~~L~Ls~-N~l~~-~~~~~~~~---------~l~~ 174 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETN-LASLE--NFPIGH------LKTLKELNVAH-NLIQS-FKLPEYFS---------NLTN 174 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSC-CCCST--TCCCTT------CTTCCEEECCS-SCCCC-CCCCGGGG---------GCTT
T ss_pred CCHHHhcCCCCCCEEECCCCc-CCCCC--hhhhhc------CcccCeecccc-Ccccc-CCCchhhc---------cchh
Confidence 7654 788999999999975 55555 43 343 66899999999 67655 32211111 1157
Q ss_pred ccEEEEecCCchhhhHHhhcC---------------------------CCccceeecccccc------------------
Q 045021 195 LKSLNVWSCSKLESIAERLDN---------------------------NTSLEMISILWCEN------------------ 229 (461)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~---------------------------l~~L~~L~l~~~~~------------------ 229 (461)
|++|++.++......+..+.. ...++.+++.++..
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 888888775321111111110 00111111111100
Q ss_pred ------------c----------------------------eec----------------------ccccCCCCCccEEE
Q 045021 230 ------------L----------------------------KFL----------------------PSGLHNLRQLQEIQ 247 (461)
Q Consensus 230 ------------~----------------------------~~~----------------------~~~~~~l~~L~~L~ 247 (461)
+ ... ...+....+|+.|+
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 334 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhh
Confidence 0 000 00112234556666
Q ss_pred ecCCCCCccCC--------------------CCCCCCCCcceEeeccCcccc--ccc-----------------------
Q 045021 248 LWGCENLVSFP--------------------EGGLPCAKLSKLGIYRCERLE--ALP----------------------- 282 (461)
Q Consensus 248 l~~~~~l~~l~--------------------~~~~~~~~L~~L~l~~c~~~~--~~~----------------------- 282 (461)
+.++. +..++ .....+++|+.++++++.... ..+
T Consensus 335 l~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 335 LVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp EESCE-ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred ccccc-ccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence 65542 11110 111235678888887653211 112
Q ss_pred cccCCCCCccEEEecc-cCC---CcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCcccc
Q 045021 283 KGLHNLKSLKKLRIGG-KLP---SLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDR 358 (461)
Q Consensus 283 ~~~~~l~~L~~L~l~~-~~~---~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~ 358 (461)
..+..+++|+.+++.. ... .......+++++.+++++|.... .....+..+++|+.|++++| .....+....+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~--~~~~~~~~~~~L~~L~Ls~N-~~~~~~~~~~~ 490 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIF 490 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTC-EEGGGEECSCC
T ss_pred ccccccccccchhhhhcccccccccccccccccccccccccccccc--ccccccccchhhhhhhhhhc-ccccccCchhh
Confidence 2234455555555554 111 11112334566777776665221 22234567788888888886 22333333224
Q ss_pred ccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCchhHHhhccc
Q 045021 359 RLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPLIEEKCRKD 435 (461)
Q Consensus 359 ~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~l~~~~~~~ 435 (461)
..+++|++|++++| .++.+ |..+..+++|++|++++ ++++.++...+ +++|++|+++++... ..
T Consensus 491 ------~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~~ 557 (635)
T 4g8a_A 491 ------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIM-----TS 557 (635)
T ss_dssp ------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCC-----BC
T ss_pred ------hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCC-----CC
Confidence 36789999999995 67766 46788999999999999 78998876433 589999999998532 11
Q ss_pred Cccccccc-cccceEEEcccEEecCC
Q 045021 436 GEQYWDLL-THIPRVRIHLPVVFDDS 460 (461)
Q Consensus 436 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 460 (461)
..+.+..+ ..+..+++.+|+..|+|
T Consensus 558 ~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 558 KKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 22223333 57889999999999886
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=7e-22 Score=194.60 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=195.5
Q ss_pred hhhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021 20 QQQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG 99 (461)
Q Consensus 20 ~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 99 (461)
.+..+ ++|++|+++++ .+..++ ++.+++|++|++++| .+..++ ++.+++|++|+++++. ++.++ +..
T Consensus 59 ~l~~l----~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N~-l~~l~--~~~- 125 (457)
T 3bz5_A 59 GIEKL----TGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTNK-LTKLD--VSQ- 125 (457)
T ss_dssp TGGGC----TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSSC-CSCCC--CTT-
T ss_pred hhccc----CCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceee-cCCCCcCCEEECCCCc-CCeec--CCC-
Confidence 36666 99999999995 467775 889999999999997 566665 8889999999999975 77765 333
Q ss_pred CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021 100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL 179 (461)
Q Consensus 100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 179 (461)
+++|+.|+++++ .++.++ ...+++|++|+++++..+..++ +.. +++|+.|++++ ++++. ++...
T Consensus 126 -l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~~------l~~L~~L~ls~-n~l~~-l~l~~- 189 (457)
T 3bz5_A 126 -NPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLD----VTP------QTQLTTLDCSF-NKITE-LDVSQ- 189 (457)
T ss_dssp -CTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCC----CTT------CTTCCEEECCS-SCCCC-CCCTT-
T ss_pred -CCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccc----ccc------CCcCCEEECCC-Cccce-ecccc-
Confidence 399999999985 566653 6778999999999986555443 222 56899999999 77776 44221
Q ss_pred cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021 180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE 259 (461)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 259 (461)
+++|+.|++.++ .+..+ .+..+++|++|++++| .+..+| +..+++|+.|++++| .+..++.
T Consensus 190 ------------l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~ 250 (457)
T 3bz5_A 190 ------------NKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDV 250 (457)
T ss_dssp ------------CTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCC
T ss_pred ------------CCCCCEEECcCC-cCCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcCH
Confidence 267999999985 44444 4788999999999987 455566 788999999999998 4555543
Q ss_pred CCCCCCCcc----------eEeeccCccccccccccCCCCCccEEEecc--cCCCcCCCCCCCCcceEEeecCchhhHHh
Q 045021 260 GGLPCAKLS----------KLGIYRCERLEALPKGLHNLKSLKKLRIGG--KLPSLEEDGLPTNLHFLKIERNMEIWKSM 327 (461)
Q Consensus 260 ~~~~~~~L~----------~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~~~~l~~~~ 327 (461)
..+++|+ .|++++|.....+| ++.+++|+.|++++ ....++. ..++|+.|++++
T Consensus 251 --~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~-------- 316 (457)
T 3bz5_A 251 --STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQ-------- 316 (457)
T ss_dssp --TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTT--------
T ss_pred --HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhh--------
Confidence 2233454 45555554444444 45667777777776 3333332 122344443332
Q ss_pred hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc
Q 045021 328 IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL 384 (461)
Q Consensus 328 ~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 384 (461)
+++|++|++++| .+..++- ..+++|+.|++++ +.++.+
T Consensus 317 -------~~~L~~L~L~~N--~l~~l~l---------~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 317 -------NPKLVYLYLNNT--ELTELDV---------SHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp -------CTTCCEEECTTC--CCSCCCC---------TTCTTCSEEECCS-SCCCBC
T ss_pred -------cccCCEEECCCC--ccccccc---------ccCCcCcEEECCC-CCCCCc
Confidence 356666777665 5555432 2455677777766 345443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4e-22 Score=203.62 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=179.1
Q ss_pred CCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCc-ccccCCCCcccEEEeeCCCCCcccccc--CCCCC
Q 045021 52 LSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPE-AWMCGTNSSLEILKIWSCHSLPYIARV--QLPPS 126 (461)
Q Consensus 52 l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~ 126 (461)
+++++.|+++++ .+..+|. +..+++|++|+++++. +..++. .+... ++|+.|+++++ .++.++.. ..+++
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~L~~n-~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYA--HTIQKLYMGFN-AIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCC--CCCCEEECCCC-cCCCCCHHHHcCCCC
Confidence 456777777765 4555665 5556777777777754 555544 33332 66667766664 34443332 44555
Q ss_pred ccEEecccCCCceEeccCCCc-ccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021 127 LKRLDISHCDNIRTLTVEDGI-QSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK 205 (461)
Q Consensus 127 L~~L~l~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (461)
|++|+++++. +..+| ... .. +++|+.|++++ +.++.
T Consensus 125 L~~L~L~~n~-l~~l~--~~~~~~------l~~L~~L~Ls~-N~l~~--------------------------------- 161 (597)
T 3oja_B 125 LTVLVLERND-LSSLP--RGIFHN------TPKLTTLSMSN-NNLER--------------------------------- 161 (597)
T ss_dssp CCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCCB---------------------------------
T ss_pred CCEEEeeCCC-CCCCC--HHHhcc------CCCCCEEEeeC-CcCCC---------------------------------
Confidence 5555555543 33333 222 11 33444444444 33332
Q ss_pred hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc
Q 045021 206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL 285 (461)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~ 285 (461)
..+..+..+++|++|++++|. +..++ ++.+++|+.|++++| .+..++ ..++|+.|++++|. +..++..
T Consensus 162 --~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~ls~n~-l~~~~~~- 229 (597)
T 3oja_B 162 --IEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRGP- 229 (597)
T ss_dssp --CCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCTTCSEEECCSSC-CCEEECS-
T ss_pred --CChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc----CCchhheeeccCCc-ccccccc-
Confidence 223345555666666665542 22222 334566666666665 222221 12356666666643 3333322
Q ss_pred CCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCC
Q 045021 286 HNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTL 364 (461)
Q Consensus 286 ~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~ 364 (461)
..++|+.|++++ .+...+....+++|++|++++|. +... ....+..+++|++|++++| .+..++.. .
T Consensus 230 -~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N--~l~~l~~~-~------ 297 (597)
T 3oja_B 230 -VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKI-MYHPFVKMQRLERLYISNN--RLVALNLY-G------ 297 (597)
T ss_dssp -CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEE-ESGGGTTCSSCCEEECTTS--CCCEEECS-S------
T ss_pred -cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCC-CHHHhcCccCCCEEECCCC--CCCCCCcc-c------
Confidence 235677777777 55555545566778888888776 3222 2235778889999999987 77777665 3
Q ss_pred CCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 365 PLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 365 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
..+++|+.|++++| .+..+|..+..+++|+.|++++ +.++.++... +++|++|++++|+.
T Consensus 298 ~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 298 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVTLKLST-HHTLKNLTLSHNDW 357 (597)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCCCCCCT-TCCCSEEECCSSCE
T ss_pred ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC-CCCCCcChhh-cCCCCEEEeeCCCC
Confidence 25679999999984 6778887888899999999999 6777776533 48999999998864
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-21 Score=187.51 Aligned_cols=286 Identities=18% Similarity=0.165 Sum_probs=187.7
Q ss_pred ccccccchhhhhhhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEee
Q 045021 9 LQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRE 85 (461)
Q Consensus 9 l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~ 85 (461)
++.++. ..+..+ ++|++|+++++. +..++ ..+..+++|++|++++| .+..+++ ++.+++|++|++++
T Consensus 57 l~~l~~----~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 57 MRKLPA----ALLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp ESEECT----HHHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhhCCh----hHhccc----ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC
Confidence 444554 446677 999999999954 56664 47999999999999997 4666655 78899999999999
Q ss_pred cCCccccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEE
Q 045021 86 CDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLE 163 (461)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 163 (461)
+. +..+|...+.. +++|++|+++++ .++.++. ...+++|++|+++++. ++.++ +.. +++|+.++
T Consensus 127 n~-l~~l~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~------l~~L~~L~ 192 (390)
T 3o6n_A 127 ND-LSSLPRGIFHN-TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD----LSL------IPSLFHAN 192 (390)
T ss_dssp SC-CCCCCTTTTTT-CTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC----GGG------CTTCSEEE
T ss_pred Cc-cCcCCHHHhcC-CCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc----ccc------ccccceee
Confidence 76 88888775332 389999999985 5555544 3678999999999875 33333 111 45788888
Q ss_pred EecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCc
Q 045021 164 IWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQL 243 (461)
Q Consensus 164 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 243 (461)
+++ +.+.. ++. +++|+.|++.++ .+..++. ...++|++|++++|. +... ..+..+++|
T Consensus 193 l~~-n~l~~-~~~---------------~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~n~-l~~~-~~l~~l~~L 250 (390)
T 3o6n_A 193 VSY-NLLST-LAI---------------PIAVEELDASHN-SINVVRG--PVNVELTILKLQHNN-LTDT-AWLLNYPGL 250 (390)
T ss_dssp CCS-SCCSE-EEC---------------CSSCSEEECCSS-CCCEEEC--CCCSSCCEEECCSSC-CCCC-GGGGGCTTC
T ss_pred ccc-ccccc-cCC---------------CCcceEEECCCC-eeeeccc--cccccccEEECCCCC-Cccc-HHHcCCCCc
Confidence 887 55554 221 134777777664 3333322 234567777777653 3332 346666777
Q ss_pred cEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCc
Q 045021 244 QEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNM 321 (461)
Q Consensus 244 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~ 321 (461)
+.|++++|......+.....+++|++|++++| .++.++..+..+++|++|++++ .+..++.. ..+++|++|++++|.
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 77777776332222334445567777777764 4455555556677777777777 55555433 344677777777776
Q ss_pred hhhHHhhhhcccCCCCcCEEEEecC
Q 045021 322 EIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 322 ~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
. +.. .+..+++|++|++++|
T Consensus 330 i-~~~----~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 330 I-VTL----KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp C-CCC----CCCTTCCCSEEECCSS
T ss_pred c-cee----CchhhccCCEEEcCCC
Confidence 2 211 2556777777777776
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.8e-21 Score=179.63 Aligned_cols=243 Identities=14% Similarity=0.184 Sum_probs=140.2
Q ss_pred CccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCcccc-CcccccCCCCcccE
Q 045021 30 RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCGTNSSLEI 106 (461)
Q Consensus 30 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~ 106 (461)
+++++++++ ..+..+|..+. ++|++|++++| .+..++. ++.+++|++|+++++. +..+ |..+... ++|++
T Consensus 32 ~l~~l~~~~-~~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPL--VKLER 104 (330)
T ss_dssp ETTEEECTT-SCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTC--TTCCE
T ss_pred CCeEEEecC-CCccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCC--CCCCE
Confidence 678888877 34567776554 67888888886 4666654 7778888888888865 5555 4444444 78888
Q ss_pred EEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeec-ccCCCCcchhhh
Q 045021 107 LKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCI-FSKNELPATLES 185 (461)
Q Consensus 107 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~ 185 (461)
|+++++ .++.++... .++|++|+++++. +..++. ..+.. +++|+.|++++ +.++.. .....+..
T Consensus 105 L~Ls~n-~l~~l~~~~-~~~L~~L~l~~n~-l~~~~~-~~~~~------l~~L~~L~l~~-n~l~~~~~~~~~~~~---- 169 (330)
T 1xku_A 105 LYLSKN-QLKELPEKM-PKTLQELRVHENE-ITKVRK-SVFNG------LNQMIVVELGT-NPLKSSGIENGAFQG---- 169 (330)
T ss_dssp EECCSS-CCSBCCSSC-CTTCCEEECCSSC-CCBBCH-HHHTT------CTTCCEEECCS-SCCCGGGBCTTGGGG----
T ss_pred EECCCC-cCCccChhh-cccccEEECCCCc-ccccCH-hHhcC------CccccEEECCC-CcCCccCcChhhccC----
Confidence 888774 455554432 3677777777754 333220 11222 44677777776 444320 01111111
Q ss_pred cccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCC
Q 045021 186 LEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPC 264 (461)
Q Consensus 186 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~ 264 (461)
+++|+.|++.++ .+..++..+ .++|++|++++|......+..+..+++|+.|++++|. +..++. ....+
T Consensus 170 ------l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 239 (330)
T 1xku_A 170 ------MKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANT 239 (330)
T ss_dssp ------CTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGS
T ss_pred ------CCCcCEEECCCC-ccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCC
Confidence 145666766663 333343322 2566777776654333334556666677777776653 333332 33445
Q ss_pred CCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC
Q 045021 265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE 305 (461)
Q Consensus 265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~ 305 (461)
++|++|++++| .++.+|..+..+++|++|++++ .+..++.
T Consensus 240 ~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 56666666664 4445666666666666666666 5544443
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4e-21 Score=181.09 Aligned_cols=230 Identities=22% Similarity=0.305 Sum_probs=176.5
Q ss_pred cCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC-CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021 28 SCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 106 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 106 (461)
++++++|++++ ..+..+|..+..+++|++|++++| .+..+|. ++.+++|++|+++++. +..+|..+... ++|+.
T Consensus 80 ~~~l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l--~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASL--NRLRE 154 (328)
T ss_dssp STTCCEEEEES-SCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC--TTCCE
T ss_pred ccceeEEEccC-CCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC--cCCCE
Confidence 38899999998 456788888888999999999997 4557877 8889999999999976 77888877766 88999
Q ss_pred EEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021 107 LKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL 186 (461)
Q Consensus 107 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 186 (461)
|++++|+....++.. +....+. ..+.. +++|+.|++++ +.++. +|.. +..
T Consensus 155 L~L~~n~~~~~~p~~-----~~~~~~~-----------~~~~~------l~~L~~L~L~~-n~l~~-lp~~-l~~----- 204 (328)
T 4fcg_A 155 LSIRACPELTELPEP-----LASTDAS-----------GEHQG------LVNLQSLRLEW-TGIRS-LPAS-IAN----- 204 (328)
T ss_dssp EEEEEETTCCCCCSC-----SEEEC-C-----------CCEEE------STTCCEEEEEE-ECCCC-CCGG-GGG-----
T ss_pred EECCCCCCccccChh-----Hhhccch-----------hhhcc------CCCCCEEECcC-CCcCc-chHh-hcC-----
Confidence 999887766655532 1111111 11222 44677777777 45554 3322 111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021 187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK 266 (461)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 266 (461)
+++|+.|++.++ .+..++..+..+++|++|++++|.....+|..++.+++|+.|++++|.....++.....+++
T Consensus 205 -----l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 205 -----LQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp -----CTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred -----CCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 156888888875 44456667888999999999998888888888999999999999999888888887777889
Q ss_pred cceEeeccCccccccccccCCCCCccEEEecc
Q 045021 267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
|++|++++|.....+|..++.+++|+.+++..
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 99999999999999999999999999998876
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.6e-20 Score=191.78 Aligned_cols=280 Identities=18% Similarity=0.205 Sum_probs=159.4
Q ss_pred CccccccchhhhhhhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEe
Q 045021 8 KLQSLVAEEEKDQQQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIR 84 (461)
Q Consensus 8 ~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~ 84 (461)
.++.++. ..++.+ ++|++|+++++. +..++ ..++.+++|++|++++| .+..+++ ++.+++|++|+++
T Consensus 62 ~l~~lp~----~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 62 TMRKLPA----ALLDSF----RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp EESEECT----HHHHHC----CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCH----HHHccC----CCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEee
Confidence 3455554 446777 999999999954 56654 48999999999999997 4666765 6889999999999
Q ss_pred ecCCccccCcccccCCCCcccEEEeeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEE
Q 045021 85 ECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKL 162 (461)
Q Consensus 85 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L 162 (461)
+|. +..+|..++.. +++|+.|+++++ .++.++. ...+++|++|+++++. +..++ .+. +++|+.|
T Consensus 132 ~n~-l~~l~~~~~~~-l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~--------l~~L~~L 197 (597)
T 3oja_B 132 RND-LSSLPRGIFHN-TPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSL--------IPSLFHA 197 (597)
T ss_dssp SSC-CCCCCTTTTTT-CTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGG--------CTTCSEE
T ss_pred CCC-CCCCCHHHhcc-CCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhh--------hhhhhhh
Confidence 976 88888775322 389999999986 5555544 3778999999999875 33333 111 4467777
Q ss_pred EEecCCCCeecccCCCCcchhhhccc---------CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceec
Q 045021 163 EIWDCPSLTCIFSKNELPATLESLEV---------GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL 233 (461)
Q Consensus 163 ~l~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~ 233 (461)
++++ +.+.. ++. +..+..+.+ +..+++|+.|++.++. +... ..+..+++|++|++++|......
T Consensus 198 ~l~~-n~l~~-l~~---~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 198 NVSY-NLLST-LAI---PIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp ECCS-SCCSE-EEC---CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEE
T ss_pred hccc-Ccccc-ccC---CchhheeeccCCcccccccccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCC
Confidence 7776 45444 211 111000000 0111234555554432 2111 23444555555555554333333
Q ss_pred ccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCc
Q 045021 234 PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNL 312 (461)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L 312 (461)
|..++.+++|+.|++++| .+..++.....+++|++|++++| .+..+|..+..+++|++|++++ .+..++ ...+++|
T Consensus 271 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L 347 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTL 347 (597)
T ss_dssp SGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCC
T ss_pred HHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCCcC-hhhcCCC
Confidence 444555555555555554 33334433334445555555543 2334444444455555555555 443333 2233445
Q ss_pred ceEEeecCc
Q 045021 313 HFLKIERNM 321 (461)
Q Consensus 313 ~~L~l~~~~ 321 (461)
+.|++++|+
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 555555544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.6e-20 Score=176.05 Aligned_cols=287 Identities=12% Similarity=0.126 Sum_probs=200.7
Q ss_pred CccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021 126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK 205 (461)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (461)
+++.++++++. ++.+| ..+. ++++.|++++ +.++. ++...+... ++|++|++.++..
T Consensus 32 ~l~~l~~~~~~-l~~lp--~~~~--------~~l~~L~L~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l 88 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVP--KDLP--------PDTALLDLQN-NKITE-IKDGDFKNL----------KNLHTLILINNKI 88 (330)
T ss_dssp ETTEEECTTSC-CCSCC--CSCC--------TTCCEEECCS-SCCCC-BCTTTTTTC----------TTCCEEECCSSCC
T ss_pred CCeEEEecCCC-ccccC--ccCC--------CCCeEEECCC-CcCCE-eChhhhccC----------CCCCEEECCCCcC
Confidence 45556665533 44455 4332 3577777777 56665 444333332 5688888877543
Q ss_pred hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccc--ccc
Q 045021 206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLE--ALP 282 (461)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~--~~~ 282 (461)
....+..+..+++|++|++++| .+..+|..+. ++|++|++++| .+..++. ....+++|++|++++|.... ..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 89 SKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 3333667788888999999876 4556665554 78999999887 4444443 34456789999998865422 445
Q ss_pred cccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021 283 KGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361 (461)
Q Consensus 283 ~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~ 361 (461)
..+..+++|++|++++ .+..++... +++|++|++++|. ++. .....+..+++|++|++++| .+..++...+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~--- 236 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNK-ITK-VDAASLKGLNNLAKLGLSFN--SISAVDNGSL--- 236 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSC-CCE-ECTGGGTTCTTCCEEECCSS--CCCEECTTTG---
T ss_pred hhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCc-CCc-cCHHHhcCCCCCCEEECCCC--cCceeChhhc---
Confidence 5788899999999999 777777543 4799999999997 332 22335788999999999998 7777765434
Q ss_pred CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--------cccccEeeccCCchhHHhhc
Q 045021 362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--------PSSLLRLYIDECPLIEEKCR 433 (461)
Q Consensus 362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--------~~~L~~L~i~~c~~l~~~~~ 433 (461)
..+++|++|+++++ .+..+|..+..+++|++|++++ +.++.++...+ .++++.|+++++|.....
T Consensus 237 ---~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-- 309 (330)
T 1xku_A 237 ---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-- 309 (330)
T ss_dssp ---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG--
T ss_pred ---cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc--
Confidence 25779999999995 7889998899999999999999 78998876433 368899999999853221
Q ss_pred ccCccccccccccceEEEcccE
Q 045021 434 KDGEQYWDLLTHIPRVRIHLPV 455 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
.....+....++..+++.+|.
T Consensus 310 -i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 -IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -SCGGGGTTCCCGGGEEC----
T ss_pred -cCccccccccceeEEEecccC
Confidence 123456667788888887763
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3.8e-20 Score=175.02 Aligned_cols=199 Identities=13% Similarity=0.138 Sum_probs=111.6
Q ss_pred CccEEEEecCCchhhh-HHhhcCCCccceeeccccccc--eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceE
Q 045021 194 SLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENL--KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKL 270 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 270 (461)
+|++|++.++. +..+ +..+..+++|++|+++++..- ...+..+..+ +|+.|++++| .+..++.... ++|++|
T Consensus 124 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 124 SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCC
T ss_pred cCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEE
Confidence 35566665532 2222 224566677777777765331 2334555555 7777777776 4555554333 477777
Q ss_pred eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021 271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD 347 (461)
Q Consensus 271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 347 (461)
++++|......+..+..+++|++|++++ .+..++.. ..+++|++|++++|. +. ..+. .+..+++|++|++++|
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~lp~-~l~~l~~L~~L~l~~N- 274 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LS-RVPA-GLPDLKLLQVVYLHTN- 274 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CC-BCCT-TGGGCTTCCEEECCSS-
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ce-ecCh-hhhcCccCCEEECCCC-
Confidence 7777543333334677777777777777 55555432 345677777777765 22 1221 3566778888888876
Q ss_pred CcccccCccccccCCCCCCCCCcceeecCCCCCC--cccccchhhccCCcEEEecCC
Q 045021 348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNL--ERLSSSIVDLQNLKYLKLYDC 402 (461)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~~~~L~~L~l~~C 402 (461)
.+..++...++........++|+.|++++++.. ...+..+..+++|+.++++++
T Consensus 275 -~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 275 -NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred -CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 666665542321000112456777777775422 122355666777777777764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.1e-20 Score=174.16 Aligned_cols=286 Identities=15% Similarity=0.172 Sum_probs=194.5
Q ss_pred CccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc
Q 045021 126 SLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK 205 (461)
Q Consensus 126 ~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (461)
+++.++++++. ++.+| ..+. ++++.|++++ +.++. ++...+... ++|++|++.++..
T Consensus 34 ~l~~l~~~~~~-l~~ip--~~~~--------~~l~~L~l~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l 90 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVP--KEIS--------PDTTLLDLQN-NDISE-LRKDDFKGL----------QHLYALVLVNNKI 90 (332)
T ss_dssp ETTEEECCSSC-CSSCC--SCCC--------TTCCEEECCS-SCCCE-ECTTTTTTC----------TTCCEEECCSSCC
T ss_pred cCCEEECCCCC-ccccC--CCCC--------CCCeEEECCC-CcCCc-cCHhHhhCC----------CCCcEEECCCCcc
Confidence 45666666543 44555 4332 3577777777 55655 433333332 5688888877543
Q ss_pred hhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccc--cccc
Q 045021 206 LESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERL--EALP 282 (461)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~--~~~~ 282 (461)
....+..+..+++|++|++++| .+..+|..+. ++|++|++++| .+..++. ....+++|++|++++|..- ...+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 3333567788888888888876 4556665554 78888888887 4555554 3455778888988886542 2345
Q ss_pred cccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021 283 KGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361 (461)
Q Consensus 283 ~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~ 361 (461)
..+..+ +|++|++++ .+..++.. .+++|++|++++|. ++. .....+..+++|++|++++| .+..++...+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~-i~~-~~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~--- 237 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNK-IQA-IELEDLLRYSKLYRLGLGHN--QIRMIENGSL--- 237 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSC-CCC-CCTTSSTTCTTCSCCBCCSS--CCCCCCTTGG---
T ss_pred ccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCc-CCc-cCHHHhcCCCCCCEEECCCC--cCCcCChhHh---
Confidence 566666 889999988 77777654 34789999999987 322 22235778899999999998 7777766434
Q ss_pred CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--------cccccEeeccCCchhHHhhc
Q 045021 362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--------PSSLLRLYIDECPLIEEKCR 433 (461)
Q Consensus 362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--------~~~L~~L~i~~c~~l~~~~~ 433 (461)
..+++|++|++++ +.+..+|..+..+++|++|++++ +.++.++...+ .++++.|+++++|......
T Consensus 238 ---~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~- 311 (332)
T 2ft3_A 238 ---SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV- 311 (332)
T ss_dssp ---GGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS-
T ss_pred ---hCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCccccccc-
Confidence 2677999999999 47889988899999999999999 78888876422 3578999999998542222
Q ss_pred ccCccccccccccceEEEcccE
Q 045021 434 KDGEQYWDLLTHIPRVRIHLPV 455 (461)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~ 455 (461)
....+..+.++..+.+.+++
T Consensus 312 --~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 --QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --CGGGGTTBCCSTTEEC----
T ss_pred --Ccccccccchhhhhhccccc
Confidence 22345567778888877664
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.2e-21 Score=200.44 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=79.5
Q ss_pred hhhhhhhcCCccEEEecCCcCCc-cccccCCC-CCC-cCEEEecCCcCcc--cccC-CCCCCCccEEEEeecCCccccCc
Q 045021 21 QQQLCELSCRLEYLILRYCKGLV-KLPQSSLS-LSS-LREIEICRCHSLV--SFPE-VALPSKLKKIEIRECDALKSLPE 94 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~-~l~~~~~~-l~~-L~~L~l~~~~~l~--~~~~-~~~l~~L~~L~l~~~~~l~~~~~ 94 (461)
+..+...+++|++|+++++. +. ..+..+.. ++. |++|++++|..+. .++. ...+++|++|++++|. +.....
T Consensus 104 l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~ 181 (592)
T 3ogk_B 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDG 181 (592)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCS
T ss_pred HHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcch
Confidence 33333345899999999864 33 22333443 444 9999998886432 2222 3467899999998875 333221
Q ss_pred cc---ccCCCCcccEEEeeCCCCCc-----ccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEe
Q 045021 95 AW---MCGTNSSLEILKIWSCHSLP-----YIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIW 165 (461)
Q Consensus 95 ~~---~~~~~~~L~~L~l~~~~~l~-----~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 165 (461)
.+ ....+++|++|+++++. ++ .++.. ..+++|++|++.+|. +..++ ..+.. .++|+.|+++
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~--~~~~~------~~~L~~L~l~ 251 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELV--GFFKA------AANLEEFCGG 251 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH--HHHHH------CTTCCEEEEC
T ss_pred hHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH--HHHhh------hhHHHhhccc
Confidence 11 01113889999987743 33 12222 456889999998865 33344 33333 5578888776
Q ss_pred c
Q 045021 166 D 166 (461)
Q Consensus 166 ~ 166 (461)
.
T Consensus 252 ~ 252 (592)
T 3ogk_B 252 S 252 (592)
T ss_dssp B
T ss_pred c
Confidence 5
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=6.6e-22 Score=202.23 Aligned_cols=399 Identities=14% Similarity=0.060 Sum_probs=199.9
Q ss_pred cCCccEEEecCCcCCcc---ccccCC------------CCCCcCEEEecCCcCcccc-cC-CCC-CC-CccEEEEeecCC
Q 045021 28 SCRLEYLILRYCKGLVK---LPQSSL------------SLSSLREIEICRCHSLVSF-PE-VAL-PS-KLKKIEIRECDA 88 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~---l~~~~~------------~l~~L~~L~l~~~~~l~~~-~~-~~~-l~-~L~~L~l~~~~~ 88 (461)
+++|++|++++|+.... +|..++ .+++|++|++++|. +.+. +. +.. ++ +|++|++++|..
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC
Confidence 36777777776654321 121122 56677777777663 2211 11 222 23 377777766653
Q ss_pred ccccCcccccCCCCcccEEEeeCCCCCccc-----ccc-CCCCCccEEecccCCCc----eEeccCCCcccccccccccC
Q 045021 89 LKSLPEAWMCGTNSSLEILKIWSCHSLPYI-----ARV-QLPPSLKRLDISHCDNI----RTLTVEDGIQSSSRRYTSYL 158 (461)
Q Consensus 89 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~~~~~----~~l~~~~~~~~~~~~~~~~~ 158 (461)
+...........+++|++|++++|. +++. +.. ..+++|++|+++++..- ..++ ..+.. +++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~~~~~------~~~ 221 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE--TIARN------CRS 221 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH--HHHHH------CTT
T ss_pred cCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH--HHHhh------CCC
Confidence 2221111111123667777776653 2211 111 34566777766654321 1111 11111 346
Q ss_pred ccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCch---hhhHHhhcCCCccceeeccccccceeccc
Q 045021 159 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKL---ESIAERLDNNTSLEMISILWCENLKFLPS 235 (461)
Q Consensus 159 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 235 (461)
|+.|++++| .+.. ++..+. .+++|+.|.+...... ......+..+++|+.+++.++ ....++.
T Consensus 222 L~~L~L~~~-~~~~------l~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~ 287 (592)
T 3ogk_B 222 LVSVKVGDF-EILE------LVGFFK------AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI 287 (592)
T ss_dssp CCEEECSSC-BGGG------GHHHHH------HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG
T ss_pred CcEEeccCc-cHHH------HHHHHh------hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH
Confidence 666666662 2222 111111 1145666666542221 112224455666666666653 3334455
Q ss_pred ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc------------cCC
Q 045021 236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG------------KLP 301 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~------------~~~ 301 (461)
.+..+++|++|++++|. +.. +......+++|++|++.++..-..++.....+++|++|++++ .+.
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 56666777777777764 221 111223456777777764332233333345667777777771 111
Q ss_pred --CcCC-CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC--CCcccccCccccccCCCCCCCCCcceeecC
Q 045021 302 --SLEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC--DDDMVSFPPEDRRLGTTLPLPASLASLTIG 376 (461)
Q Consensus 302 --~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~ 376 (461)
.+.. ...+++|++|+++.+. +++.........+++|++|++.++ ...+...|.+ .+.......+++|++|+++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHHHHhCCCCCEEEEe
Confidence 0111 1235678888884443 554443333344778888888742 1234432211 0000000235788888887
Q ss_pred CCCC-Ccc-cccc-hhhccCCcEEEecCCCCCcccC--C-CCCcccccEeeccCCchhHHhhcccCccccccccccceEE
Q 045021 377 DFPN-LER-LSSS-IVDLQNLKYLKLYDCPKLKYFS--E-KGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVR 450 (461)
Q Consensus 377 ~~~~-l~~-i~~~-~~~~~~L~~L~l~~C~~l~~~~--~-~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
.|.+ +.. .... ...+++|++|++++| +++... . ..-+++|++|++++|+.-..... .-+..+.+++.++
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA----AAVTKLPSLRYLW 519 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH----HHHHHCSSCCEEE
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH----HHHHhcCccCeeE
Confidence 7653 221 1122 234888999999884 465421 1 12248999999999983211111 1123467888999
Q ss_pred EcccEEec
Q 045021 451 IHLPVVFD 458 (461)
Q Consensus 451 ~~~~~~~~ 458 (461)
+.++.+.+
T Consensus 520 ls~n~it~ 527 (592)
T 3ogk_B 520 VQGYRASM 527 (592)
T ss_dssp EESCBCCT
T ss_pred CcCCcCCH
Confidence 98888654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.1e-19 Score=171.19 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=114.2
Q ss_pred ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeecc
Q 045021 195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYR 274 (461)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 274 (461)
++.|++.++ .+..++..+..+++|++|++++| .+..+|..++.+++|++|++++| .+..+|.....+++|++|++++
T Consensus 83 l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCC
Confidence 444444442 23333333444445555555444 22244444455555555555554 2334444334444555555555
Q ss_pred CccccccccccC---------CCCCccEEEecc-cCCCcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021 275 CERLEALPKGLH---------NLKSLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI 343 (461)
Q Consensus 275 c~~~~~~~~~~~---------~l~~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 343 (461)
|.....+|..+. .+++|++|++++ .+..++.. ..+++|++|++++|.. .. .+. .+..+++|++|++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~-l~~-~l~~l~~L~~L~L 236 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SA-LGP-AIHHLPKLEELDL 236 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CC-CCG-GGGGCTTCCEEEC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-Cc-Cch-hhccCCCCCEEEC
Confidence 444444444332 356666666666 55455432 3445666666666652 21 111 3556677777777
Q ss_pred ecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeec
Q 045021 344 EGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYI 422 (461)
Q Consensus 344 ~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i 422 (461)
++| .....++.. + ..+++|++|++++|+....+|..+..+++|++|++++|+.+..+|.. +-.++++.+++
T Consensus 237 s~n-~~~~~~p~~-~------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 237 RGC-TALRNYPPI-F------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTC-TTCCBCCCC-T------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred cCC-cchhhhHHH-h------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 775 334444543 3 24567777777776666667666677777777777777766666653 12456666655
Q ss_pred c
Q 045021 423 D 423 (461)
Q Consensus 423 ~ 423 (461)
.
T Consensus 309 ~ 309 (328)
T 4fcg_A 309 P 309 (328)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=5e-22 Score=196.75 Aligned_cols=373 Identities=19% Similarity=0.187 Sum_probs=203.8
Q ss_pred CCccEEEecCCcCCccc--cccCCCCCCcCEEEecCCcCcc-----cccC-CCCCCCccEEEEeecCCccccCc-ccccC
Q 045021 29 CRLEYLILRYCKGLVKL--PQSSLSLSSLREIEICRCHSLV-----SFPE-VALPSKLKKIEIRECDALKSLPE-AWMCG 99 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~-----~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~~ 99 (461)
++|++|+++++. +... ...+..+++|++|++++|. +. .++. +..+++|++|+++++. +.+... .+...
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 566666666533 3322 2224556666666666653 32 2222 4455666666666654 333111 11110
Q ss_pred CCC----cccEEEeeCCCCCcc-----cc-ccCCCCCccEEecccCCCceEe-ccCCCcccccccccccCccEEEEecCC
Q 045021 100 TNS----SLEILKIWSCHSLPY-----IA-RVQLPPSLKRLDISHCDNIRTL-TVEDGIQSSSRRYTSYLLEKLEIWDCP 168 (461)
Q Consensus 100 ~~~----~L~~L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 168 (461)
++ +|++|++++|. ++. ++ ....+++|++|+++++. +... + ..+.... ....++|+.|++++ +
T Consensus 80 -l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~--~~l~~~l-~~~~~~L~~L~L~~-n 152 (461)
T 1z7x_W 80 -LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGL--QLLCEGL-LDPQCRLEKLQLEY-C 152 (461)
T ss_dssp -TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHH--HHHHHHH-TSTTCCCCEEECTT-S
T ss_pred -HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHH--HHHHHHH-hcCCCcceEEECCC-C
Confidence 12 56666666643 332 11 12455667777776654 2210 0 0000000 00022577777777 3
Q ss_pred CCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhc-----CCCccceeeccccccce----ecccccCC
Q 045021 169 SLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLD-----NNTSLEMISILWCENLK----FLPSGLHN 239 (461)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~l~~L~~L~l~~~~~~~----~~~~~~~~ 239 (461)
.++. .....++..+ ..+++|++|+++++...+..+..+. ..++|++|++++|..-. .++..+..
T Consensus 153 ~l~~-~~~~~l~~~l------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 153 SLSA-ASCEPLASVL------RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp CCBG-GGHHHHHHHH------HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHH------hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 4433 1111111111 1125688888877643222222221 35688888888773222 24556667
Q ss_pred CCCccEEEecCCCCCccC------CCCCCCCCCcceEeeccCccccc-----cccccCCCCCccEEEecc-cCC-----C
Q 045021 240 LRQLQEIQLWGCENLVSF------PEGGLPCAKLSKLGIYRCERLEA-----LPKGLHNLKSLKKLRIGG-KLP-----S 302 (461)
Q Consensus 240 l~~L~~L~l~~~~~l~~l------~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~l~~L~~L~l~~-~~~-----~ 302 (461)
+++|++|++++|. +... +.....+++|++|++++| .++. ++..+..+++|++|++++ .+. .
T Consensus 226 ~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 226 KASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 7888888888873 3321 112223568889988887 4443 566677788999999988 432 1
Q ss_pred cCCC--CCCCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCC
Q 045021 303 LEED--GLPTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGD 377 (461)
Q Consensus 303 l~~~--~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~ 377 (461)
+... ...++|++|++++|. ++... ....+..+++|++|++++| .+.......++.. -....++|++|++++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~-l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELCQG-LGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHHHH-HTSTTCCCCEEECTT
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC--ccccccHHHHHHH-HcCCCCceEEEECCC
Confidence 2111 233589999999997 33221 1224667899999999998 5544322101100 001256999999999
Q ss_pred CCCCc-----ccccchhhccCCcEEEecCCCCCcccCCC-------CCcccccEeeccCCc
Q 045021 378 FPNLE-----RLSSSIVDLQNLKYLKLYDCPKLKYFSEK-------GLPSSLLRLYIDECP 426 (461)
Q Consensus 378 ~~~l~-----~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-------~~~~~L~~L~i~~c~ 426 (461)
| .+. .++..+..+++|++|++++ +.++..... ....+|+.|.+.++.
T Consensus 380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 380 C-DVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp S-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred C-CCChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 6 565 5677788899999999999 567654221 112367777776653
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.9e-21 Score=197.58 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCCcceeecCCCCCCccc-c-cchhhccCCcEEEecCCCCCcccCCC---CCcccccEeeccCCch
Q 045021 367 PASLASLTIGDFPNLERL-S-SSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLYIDECPL 427 (461)
Q Consensus 367 ~~~L~~L~l~~~~~l~~i-~-~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~i~~c~~ 427 (461)
+++|+.|++++|. +... . .....+++|++|++++|+. +..... ..+++|++|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3455666665542 3211 1 1124455566666655443 221110 1135556666655543
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.4e-21 Score=199.86 Aligned_cols=395 Identities=16% Similarity=0.126 Sum_probs=226.3
Q ss_pred CCccEEEecCCcCCcccc---c------------cCCCCCCcCEEEecCCcCcccccC-CC-CCCCccEEEEeecCCccc
Q 045021 29 CRLEYLILRYCKGLVKLP---Q------------SSLSLSSLREIEICRCHSLVSFPE-VA-LPSKLKKIEIRECDALKS 91 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~---~------------~~~~l~~L~~L~l~~~~~l~~~~~-~~-~l~~L~~L~l~~~~~l~~ 91 (461)
++|++|++++++.+.++. . ....+++|++|++++|..-...+. +. .+++|++|++++|..+..
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 888888888876543221 1 123577888888888742221111 32 477888888888754544
Q ss_pred --cCcccccCCCCcccEEEeeCCCCCcc-----cccc-CCCCCccEEecccCC-CceEeccCCCcccccccccccCccEE
Q 045021 92 --LPEAWMCGTNSSLEILKIWSCHSLPY-----IARV-QLPPSLKRLDISHCD-NIRTLTVEDGIQSSSRRYTSYLLEKL 162 (461)
Q Consensus 92 --~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~-~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~~~~~~~~~L~~L 162 (461)
++..... +++|++|++++|. +++ ++.. ..+++|++|+++++. .+.. ..+...... +++|+.|
T Consensus 146 ~~l~~~~~~--~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~l~~~--~~~L~~L 216 (594)
T 2p1m_B 146 DGLAAIAAT--CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF----SALERLVTR--CPNLKSL 216 (594)
T ss_dssp HHHHHHHHH--CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH----HHHHHHHHH--CTTCCEE
T ss_pred HHHHHHHHh--CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCH----HHHHHHHHh--CCCCcEE
Confidence 2222222 3788888888765 332 2222 356778888888765 1110 111110011 3578888
Q ss_pred EEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCc------hhhhHHhhcCCCcccee-eccccccceeccc
Q 045021 163 EIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSK------LESIAERLDNNTSLEMI-SILWCENLKFLPS 235 (461)
Q Consensus 163 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~ 235 (461)
++++|..+.. ++..+ ..+++|+.|.+..+.. +..++..+.++++|+.+ .+... ....++.
T Consensus 217 ~L~~~~~~~~------l~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~ 283 (594)
T 2p1m_B 217 KLNRAVPLEK------LATLL------QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPA 283 (594)
T ss_dssp ECCTTSCHHH------HHHHH------HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGG
T ss_pred ecCCCCcHHH------HHHHH------hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHH
Confidence 8877644332 11111 1125677777655422 23344466777788877 34332 2233444
Q ss_pred ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc----------cCCC-
Q 045021 236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG----------KLPS- 302 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~----------~~~~- 302 (461)
.+..+++|++|++++|. +.. +......+++|++|++.+|.....++.....+++|++|++++ .+..
T Consensus 284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 44567899999999986 432 111234567999999998833223333344689999999932 1111
Q ss_pred -cCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEe-----cCCCcccccCccccccCCCCCCCCCcceeec
Q 045021 303 -LEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIE-----GCDDDMVSFPPEDRRLGTTLPLPASLASLTI 375 (461)
Q Consensus 303 -l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l 375 (461)
+... ..+++|++|.+.++. +++.........+++|++|++. +| ..+...+.+ .+.......+++|++|++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~-~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLD-IGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTH-HHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCc-ccccCCchh-hHHHHHHhhCCCccEEee
Confidence 1111 235799999665544 6555444444568999999999 33 344433221 000000024579999999
Q ss_pred CCCCCCccc-ccchh-hccCCcEEEecCCCCCcccCCCC---CcccccEeeccCCchhHHhhcccCccccccccccceEE
Q 045021 376 GDFPNLERL-SSSIV-DLQNLKYLKLYDCPKLKYFSEKG---LPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVR 450 (461)
Q Consensus 376 ~~~~~l~~i-~~~~~-~~~~L~~L~l~~C~~l~~~~~~~---~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 450 (461)
++ .+... ...+. .+++|+.|++++|. ++...... .+++|++|++++|+.-...... -...+.+++.++
T Consensus 440 ~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~ 512 (594)
T 2p1m_B 440 SG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA----NASKLETMRSLW 512 (594)
T ss_dssp CS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH----TGGGGGGSSEEE
T ss_pred cC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH----HHHhCCCCCEEe
Confidence 87 44332 23333 48999999999954 65432211 1589999999999863222211 122356888888
Q ss_pred EcccEE
Q 045021 451 IHLPVV 456 (461)
Q Consensus 451 ~~~~~~ 456 (461)
+.++.+
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 888765
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.8e-19 Score=168.76 Aligned_cols=250 Identities=17% Similarity=0.110 Sum_probs=139.3
Q ss_pred CCccEEEecCCcCCc--cccccCCCCCCcCEEEecCCcCcc-cccC-CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021 29 CRLEYLILRYCKGLV--KLPQSSLSLSSLREIEICRCHSLV-SFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL 104 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~-~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 104 (461)
.++++|+++++.--. .+|..+..+++|++|++++++.+. .+|. ++.+++|++|+++++.....+|..+... ++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC--TTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC--CCC
Confidence 345555555533211 345555555555555555312222 3343 5555555555555544222444444433 455
Q ss_pred cEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021 105 EILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE 184 (461)
Q Consensus 105 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 184 (461)
++|++++ +.....+| ..+.. +++|+.|++++ +.++..+|...
T Consensus 128 ~~L~Ls~-----------------------N~l~~~~p--~~~~~------l~~L~~L~L~~-N~l~~~~p~~l------ 169 (313)
T 1ogq_A 128 VTLDFSY-----------------------NALSGTLP--PSISS------LPNLVGITFDG-NRISGAIPDSY------ 169 (313)
T ss_dssp CEEECCS-----------------------SEEESCCC--GGGGG------CTTCCEEECCS-SCCEEECCGGG------
T ss_pred CEEeCCC-----------------------CccCCcCC--hHHhc------CCCCCeEECcC-CcccCcCCHHH------
Confidence 5555544 33111233 33333 44566666655 44442122111
Q ss_pred hcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCC
Q 045021 185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPC 264 (461)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 264 (461)
....++|+.|++.++......+..+..+. |++|++++|......+..+..+++|+.|++++|......+. ...+
T Consensus 170 ----~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 170 ----GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp ----GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred ----hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 11112566666666543334555566665 88888887754455667778888888888888743223332 4445
Q ss_pred CCcceEeeccCccccccccccCCCCCccEEEecc-cCC-CcCCCCCCCCcceEEeecCchhh
Q 045021 265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLP-SLEEDGLPTNLHFLKIERNMEIW 324 (461)
Q Consensus 265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~-~l~~~~~~~~L~~L~l~~~~~l~ 324 (461)
++|++|++++|.....+|..+..+++|++|++++ .+. .+|....+++|+.+++.+|+.+.
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 6888888888765556777788888888888887 443 45555566777777777776443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=6.5e-18 Score=171.37 Aligned_cols=254 Identities=27% Similarity=0.326 Sum_probs=154.2
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
.++++|++++ .++..+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ++.+|. . .++|++|+
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~--l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---L--PPGLLELS 107 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---C--CTTCCEEE
T ss_pred CCCcEEEecC-CCcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---C--CCCCCEEE
Confidence 5699999998 55788888665 89999999997 5777876 67899999999976 788876 2 38899999
Q ss_pred eeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhccc
Q 045021 109 IWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEV 188 (461)
Q Consensus 109 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 188 (461)
++++ .++.++. .+++|+.|+++++. +..+| ..+ ++|+.|++++ +.++. ++..
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp--~~l---------~~L~~L~Ls~-N~l~~-l~~~----------- 159 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP--VLP---------PGLQELSVSD-NQLAS-LPAL----------- 159 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCC--CCC---------TTCCEEECCS-SCCSC-CCCC-----------
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCC--CCC---------CCCCEEECcC-CcCCC-cCCc-----------
Confidence 9884 5666665 66788888888864 55565 432 3688888887 56554 3321
Q ss_pred CCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcc
Q 045021 189 GNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLS 268 (461)
Q Consensus 189 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 268 (461)
+++|+.|++.++ .+..++ ..+++|+.|++++| .+..+|.. +++|+.|++++| .+..++.. +++|+
T Consensus 160 ---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~ 224 (622)
T 3g06_A 160 ---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLK 224 (622)
T ss_dssp ---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCC
T ss_pred ---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCC
Confidence 135777777663 333343 34566666666655 33334432 255666666655 33444331 23566
Q ss_pred eEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 269 KLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 269 ~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
+|++++| .++.+| ..+++|++|++++ .+..++. .+++|+.|++++|. +. ..+ ..+..+++|+.|++++|
T Consensus 225 ~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~-L~-~lp-~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 225 ELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQ-LT-RLP-ESLIHLSSETTVNLEGN 294 (622)
T ss_dssp EEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CC-SCC-GGGGGSCTTCEEECCSC
T ss_pred EEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCC-CC-cCC-HHHhhccccCEEEecCC
Confidence 6666553 344444 2345555555555 4444443 34445555555543 22 111 12344444555555444
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=3.5e-18 Score=167.95 Aligned_cols=219 Identities=16% Similarity=0.187 Sum_probs=140.1
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cc
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SG 236 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 236 (461)
+++.|++++ ++++. ++...+... ++|+.|++.++......+..+..+++|++|++++| .+..++ ..
T Consensus 65 ~l~~L~L~~-n~i~~-~~~~~~~~l----------~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 65 NTRLLNLHE-NQIQI-IKVNSFKHL----------RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TCSEEECCS-CCCCE-ECTTTTSSC----------SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCcEEEccC-CcCCe-eCHHHhhCC----------CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 566666666 55555 333333322 56777777664332223346677777777777776 444444 35
Q ss_pred cCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCCCCCCCcc
Q 045021 237 LHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEEDGLPTNLH 313 (461)
Q Consensus 237 ~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~ 313 (461)
+..+++|++|++++| .+..++. ....+++|++|++++|..+..++. .+..+++|++|++++ .+..++....+++|+
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCC
T ss_pred hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccC
Confidence 677777777777776 3444444 444566777777777766666654 567777888888877 777777666677788
Q ss_pred eEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhcc
Q 045021 314 FLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQ 392 (461)
Q Consensus 314 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~ 392 (461)
+|++++|. +.. .....+..+++|++|++++| .+..++...+ ..+++|+.|++++ +.++.++ ..+..++
T Consensus 211 ~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 211 ELDLSGNH-LSA-IRPGSFQGLMHLQKLWMIQS--QIQVIERNAF------DNLQSLVEINLAH-NNLTLLPHDLFTPLH 279 (440)
T ss_dssp EEECTTSC-CCE-ECTTTTTTCTTCCEEECTTC--CCCEECTTSS------TTCTTCCEEECTT-SCCCCCCTTTTSSCT
T ss_pred EEECCCCc-cCc-cChhhhccCccCCEEECCCC--ceeEEChhhh------cCCCCCCEEECCC-CCCCccChhHhcccc
Confidence 88887775 332 22234667778888888876 6666655434 2566788888887 4666665 4456677
Q ss_pred CCcEEEecC
Q 045021 393 NLKYLKLYD 401 (461)
Q Consensus 393 ~L~~L~l~~ 401 (461)
+|+.|++++
T Consensus 280 ~L~~L~L~~ 288 (440)
T 3zyj_A 280 HLERIHLHH 288 (440)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEcCC
Confidence 788888777
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.8e-18 Score=167.54 Aligned_cols=196 Identities=21% Similarity=0.229 Sum_probs=116.0
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceE
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKL 270 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (461)
++|+.|++.++..-...+..+..+++|++|++++|. +..++ ..+..+++|++|++++| .+..++. ....+++|++|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence 456666665542222223455666666666666653 33333 34666667777777666 3444443 34445667777
Q ss_pred eeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021 271 GIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD 348 (461)
Q Consensus 271 ~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 348 (461)
++++|..++.++. .+..+++|++|++++ .+..++....+++|++|++++|. +.. .....+..+++|++|++++|
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~n-- 252 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPE-IRPGSFHGLSSLKKLWVMNS-- 252 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSE-ECGGGGTTCTTCCEEECTTS--
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc-Ccc-cCcccccCccCCCEEEeCCC--
Confidence 7776666665544 466677777777777 66666655666677777777765 221 22224666777777777776
Q ss_pred cccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
.+..++...+ ..+++|+.|+++++ .+..++ ..+..+++|+.|++.+
T Consensus 253 ~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 253 QVSLIERNAF------DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCCEECTTTT------TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred cCceECHHHh------cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 5555544323 24567777777773 566555 3455667777777766
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=163.58 Aligned_cols=247 Identities=19% Similarity=0.196 Sum_probs=149.7
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc-c
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS-G 236 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 236 (461)
+|+.|++++ +.++. ++...+... ++|++|++.++......+..+..+++|++|++++| .+..++. .
T Consensus 53 ~L~~L~l~~-n~i~~-~~~~~~~~l----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 119 (353)
T 2z80_A 53 AVKSLDLSN-NRITY-ISNSDLQRC----------VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSW 119 (353)
T ss_dssp TCCEEECTT-SCCCE-ECTTTTTTC----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHH
T ss_pred cCcEEECCC-CcCcc-cCHHHhccC----------CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhH
Confidence 455555555 44544 333333222 45666666654222222335666677777777765 3444443 3
Q ss_pred cCCCCCccEEEecCCCCCccCCC--CCCCCCCcceEeeccCcccccc-ccccCCCCCccEEEecc-cCCCcCC--CCCCC
Q 045021 237 LHNLRQLQEIQLWGCENLVSFPE--GGLPCAKLSKLGIYRCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEE--DGLPT 310 (461)
Q Consensus 237 ~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~ 310 (461)
+..+++|++|++++| .+..++. ....+++|++|++++|..++.+ +..+..+++|++|++++ .+..+.. ...++
T Consensus 120 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 120 FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 666777777777776 4445554 3445667777777776555554 34567777788888777 5544422 24557
Q ss_pred CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCc-----ccc
Q 045021 311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-----RLS 385 (461)
Q Consensus 311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~i~ 385 (461)
+|++|++++|.. . ..+...+..+++|++|++++| .+..++...+. .....+.++.++++++ .+. .+|
T Consensus 199 ~L~~L~l~~n~l-~-~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~---~~~~~~~l~~l~L~~~-~l~~~~l~~l~ 270 (353)
T 2z80_A 199 NVSHLILHMKQH-I-LLLEIFVDVTSSVECLELRDT--DLDTFHFSELS---TGETNSLIKKFTFRNV-KITDESLFQVM 270 (353)
T ss_dssp EEEEEEEECSCS-T-THHHHHHHHTTTEEEEEEESC--BCTTCCCC---------CCCCCCEEEEESC-BCCHHHHHHHH
T ss_pred cCCeecCCCCcc-c-cchhhhhhhcccccEEECCCC--ccccccccccc---cccccchhhccccccc-cccCcchhhhH
Confidence 788888888773 2 223333556788999999887 55554432111 0023456777777764 332 356
Q ss_pred cchhhccCCcEEEecCCCCCcccCCCC--CcccccEeeccCCch
Q 045021 386 SSIVDLQNLKYLKLYDCPKLKYFSEKG--LPSSLLRLYIDECPL 427 (461)
Q Consensus 386 ~~~~~~~~L~~L~l~~C~~l~~~~~~~--~~~~L~~L~i~~c~~ 427 (461)
..+..+++|++|++++ ++++.+|... ..++|++|++++|+.
T Consensus 271 ~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 271 KLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6778889999999998 6888887743 368899999988753
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.1e-18 Score=163.24 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=127.8
Q ss_pred CccEEEEec-CCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021 194 SLKSLNVWS-CSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272 (461)
Q Consensus 194 ~L~~L~l~~-~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (461)
+|++|++.+ +.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....++.....+++|++|++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 344444442 2222233444555555555555554333344555555555555555555322234443444455555555
Q ss_pred ccCccccccccccCCCC-CccEEEecc-cCC-CcCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021 273 YRCERLEALPKGLHNLK-SLKKLRIGG-KLP-SLEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD 348 (461)
Q Consensus 273 ~~c~~~~~~~~~~~~l~-~L~~L~l~~-~~~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 348 (461)
++|.....+|..+..++ +|++|++++ .+. .++.. ..+ +|++|++++|. +... ....+..+++|++|++++|
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N-- 231 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKN-- 231 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSS--
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCC--
Confidence 55433334555555555 666666665 332 22211 222 27777777776 2211 2235677888888888887
Q ss_pred cccccCccccccCCCCCCCCCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCc-ccCCCCCcccccEeeccCCc
Q 045021 349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLK-YFSEKGLPSSLLRLYIDECP 426 (461)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~-~~~~~~~~~~L~~L~i~~c~ 426 (461)
.+...... + ..+++|++|+++++ .+. .+|..+..+++|++|++++ ++++ .+|.....++|+.+++++++
T Consensus 232 ~l~~~~~~-~------~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDLGK-V------GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBGGG-C------CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ceeeecCc-c------cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcC-CcccccCCCCccccccChHHhcCCC
Confidence 55433332 3 35678999999985 554 6778888899999999998 5665 56665556888888898887
Q ss_pred hh
Q 045021 427 LI 428 (461)
Q Consensus 427 ~l 428 (461)
.+
T Consensus 303 ~l 304 (313)
T 1ogq_A 303 CL 304 (313)
T ss_dssp EE
T ss_pred Cc
Confidence 44
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.6e-17 Score=168.58 Aligned_cols=253 Identities=29% Similarity=0.374 Sum_probs=134.6
Q ss_pred CCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCccccccCCCCCccEEec
Q 045021 53 SSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDI 132 (461)
Q Consensus 53 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 132 (461)
.+++.|+++++ .+..+|. ...++|++|++++|. ++.+|.. +++|+.|+++++ .++.++. .+++|++|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~-~l~~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCS-CCCTTCSEEEECSCC-CSCCCCC-----CTTCCEEEECSC-CCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccCh-hhCCCCcEEEecCCC-CCCCCCc-----CCCCCEEEcCCC-cCCcCCC--CCCCCCEEEC
Confidence 35889999886 5677775 123789999998875 7777762 378888888885 4666655 5677788887
Q ss_pred ccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHh
Q 045021 133 SHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAER 212 (461)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 212 (461)
+++. +..+| .. .++|+.|++++ ++++. +|... ++|++|++++| .+..++.
T Consensus 109 s~N~-l~~l~--~~---------l~~L~~L~L~~-N~l~~-lp~~l--------------~~L~~L~Ls~N-~l~~l~~- 158 (622)
T 3g06_A 109 FSNP-LTHLP--AL---------PSGLCKLWIFG-NQLTS-LPVLP--------------PGLQELSVSDN-QLASLPA- 158 (622)
T ss_dssp CSCC-CCCCC--CC---------CTTCCEEECCS-SCCSC-CCCCC--------------TTCCEEECCSS-CCSCCCC-
T ss_pred cCCc-CCCCC--CC---------CCCcCEEECCC-CCCCc-CCCCC--------------CCCCEEECcCC-cCCCcCC-
Confidence 7754 44455 31 33577777776 55554 33210 34666666654 3333221
Q ss_pred hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021 213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK 292 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~ 292 (461)
.+.+|+.|++++| .+..+| ..+++|+.|++++| .+..++.. .++|+.|++++| .++.+|. .+++|+
T Consensus 159 --~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~---~~~~L~ 224 (622)
T 3g06_A 159 --LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPA---LPSGLK 224 (622)
T ss_dssp --CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCC---CCTTCC
T ss_pred --ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCC---CCCCCC
Confidence 2345555555544 333333 22345555555554 23333321 134555555443 2333332 124444
Q ss_pred EEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021 293 KLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA 371 (461)
Q Consensus 293 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~ 371 (461)
+|++++ .+..++ ..+++|++|++++| .+..++. .+++|+
T Consensus 225 ~L~Ls~N~L~~lp----------------------------~~l~~L~~L~Ls~N--~L~~lp~----------~~~~L~ 264 (622)
T 3g06_A 225 ELIVSGNRLTSLP----------------------------VLPSELKELMVSGN--RLTSLPM----------LPSGLL 264 (622)
T ss_dssp EEECCSSCCSCCC----------------------------CCCTTCCEEECCSS--CCSCCCC----------CCTTCC
T ss_pred EEEccCCccCcCC----------------------------CCCCcCcEEECCCC--CCCcCCc----------ccccCc
Confidence 444444 333333 23345555555554 4444433 223555
Q ss_pred eeecCCCCCCcccccchhhccCCcEEEecC
Q 045021 372 SLTIGDFPNLERLSSSIVDLQNLKYLKLYD 401 (461)
Q Consensus 372 ~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~ 401 (461)
.|++++| .+..+|..+..+++|+.|++++
T Consensus 265 ~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 265 SLSVYRN-QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp EEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred EEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence 5555552 4445554555555555555555
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.3e-19 Score=168.42 Aligned_cols=244 Identities=13% Similarity=0.090 Sum_probs=158.7
Q ss_pred hhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccC
Q 045021 21 QQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCG 99 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 99 (461)
+..+...+++|++|+++++ .+..+ |..+..+++|++|++++| .+...+++..+++|++|+++++. ++.++..
T Consensus 26 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~---- 98 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG---- 98 (317)
T ss_dssp HHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEEC----
T ss_pred HHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccCC----
Confidence 3334334489999999995 45655 457899999999999997 45556568889999999999976 7766643
Q ss_pred CCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCC
Q 045021 100 TNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNEL 179 (461)
Q Consensus 100 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 179 (461)
++|+.|+++++ .++.++. ..+++|++|+++++. +..++. ..+.. +++|+.|++++ +.++. .+...+
T Consensus 99 --~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~N~-l~~~~~-~~~~~------l~~L~~L~Ls~-N~l~~-~~~~~~ 164 (317)
T 3o53_A 99 --PSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRD-LDEGC------RSRVQYLDLKL-NEIDT-VNFAEL 164 (317)
T ss_dssp --TTCCEEECCSS-CCSEEEE-CCCSSCEEEECCSSC-CCSGGG-BCTGG------GSSEEEEECTT-SCCCE-EEGGGG
T ss_pred --CCcCEEECCCC-ccCCcCc-cccCCCCEEECCCCC-CCCccc-hhhhc------cCCCCEEECCC-CCCCc-ccHHHH
Confidence 78999999884 5555543 336778888888865 333320 23332 45788888887 66665 322222
Q ss_pred cchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC
Q 045021 180 PATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE 259 (461)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 259 (461)
... +++|+.|+++++ .+..++ ....+++|++|++++| .+..++..+..+++|+.|++++| .+..++.
T Consensus 165 ~~~---------l~~L~~L~L~~N-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 165 AAS---------SDTLEHLNLQYN-FIYDVK-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GGG---------TTTCCEEECTTS-CCCEEE-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred hhc---------cCcCCEEECCCC-cCcccc-cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh
Confidence 111 146777777774 333333 2234677777777775 45555555667777777777776 4556666
Q ss_pred CCCCCCCcceEeeccCccc-cccccccCCCCCccEEEecc
Q 045021 260 GGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 260 ~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~ 298 (461)
....+++|+.|++++|... ..++..+..+++|+.+++.+
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 5555667777777775544 34455666666666666654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=7.4e-18 Score=160.70 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=113.6
Q ss_pred CcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcc-cccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021 54 SLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEA-WMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK 128 (461)
Q Consensus 54 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 128 (461)
+|++|++++| .+..++. +..+++|++|+++++. +..++.. +... ++|++|+++++ .++.++.. ..+++|+
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l--~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSL--GSLEHLDLSYN-YLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTC--TTCCEEECCSS-CCSSCCHHHHTTCTTCS
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCC--CCCCEEECCCC-cCCcCCHhHhCCCccCC
Confidence 4555555554 2333433 4445555555555543 3333322 2222 45555555442 33333331 3445555
Q ss_pred EEecccCCCceEeccCC--CcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCch
Q 045021 129 RLDISHCDNIRTLTVED--GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKL 206 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 206 (461)
+|+++++. +..++ . .+.. +++|+.|+++++..+.. ++...+... ++|++|++.++...
T Consensus 128 ~L~L~~n~-l~~l~--~~~~~~~------l~~L~~L~l~~n~~~~~-~~~~~~~~l----------~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 128 FLNLLGNP-YKTLG--ETSLFSH------LTKLQILRVGNMDTFTK-IQRKDFAGL----------TFLEELEIDASDLQ 187 (353)
T ss_dssp EEECTTCC-CSSSC--SSCSCTT------CTTCCEEEEEESSSCCE-ECTTTTTTC----------CEEEEEEEEETTCC
T ss_pred EEECCCCC-CcccC--chhhhcc------CCCCcEEECCCCccccc-cCHHHccCC----------CCCCEEECCCCCcC
Confidence 55555432 22333 2 1222 33455555555333443 222222211 34555555554332
Q ss_pred hhhHHhhcCCCccceeeccccccceecccc-cCCCCCccEEEecCCCCCccCCC----CCCCCCCcceEeeccCc----c
Q 045021 207 ESIAERLDNNTSLEMISILWCENLKFLPSG-LHNLRQLQEIQLWGCENLVSFPE----GGLPCAKLSKLGIYRCE----R 277 (461)
Q Consensus 207 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~~L~~L~l~~c~----~ 277 (461)
...+..+..+++|++|++++|. +..++.. +..+++|+.|++++| .+..++. .....+.++.+++.++. .
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred ccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcc
Confidence 2234455555666666665543 2333322 223566666666665 2222221 01123355666665543 1
Q ss_pred ccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 278 LEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
+..+|..+..+++|++|++++ .+..++.. ..+++|++|++++|+
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 234566677788888888877 66666653 345667777777665
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.3e-17 Score=155.74 Aligned_cols=103 Identities=23% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCccEEEEecCCchhhh---HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC--CCCCCCCc
Q 045021 193 PSLKSLNVWSCSKLESI---AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE--GGLPCAKL 267 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L 267 (461)
++|+.|++.++. +... +..+..+++|++|++++| .+..++..+..+++|++|++++| .+..++. ....+++|
T Consensus 52 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 52 TQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTC
T ss_pred ccCCEEECCCCc-cCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCC
Confidence 456666665532 2211 234445667777777665 34455555666677777777665 3333332 33445566
Q ss_pred ceEeeccCccccccccccCCCCCccEEEecc
Q 045021 268 SKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 268 ~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
++|++++|......+..+..+++|++|++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 6666666543333344455555555555544
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=7.4e-17 Score=158.49 Aligned_cols=236 Identities=19% Similarity=0.272 Sum_probs=107.4
Q ss_pred cEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021 32 EYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI 109 (461)
Q Consensus 32 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 109 (461)
+.++..+ .++..+|..+. ++++.|++++| .+..++. +..+++|++|+++++. +..++...+.. +++|+.|++
T Consensus 46 ~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVR-KNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-LANLNTLEL 119 (440)
T ss_dssp CEEECCS-CCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT-CSSCCEEEC
T ss_pred CEEEeCC-CCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC-CccCCEEEC
Confidence 3444444 34455555443 46666666664 3444433 5556666666666644 45444332221 256666666
Q ss_pred eCCCCCcccccc--CCCCCccEEecccCCCceEeccCC-CcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021 110 WSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVED-GIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL 186 (461)
Q Consensus 110 ~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 186 (461)
+++ .++.++.. ..+++|++|+++++. +..++ . .+.. +++|+.|++++++.+.. ++..
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~------l~~L~~L~l~~~~~l~~-i~~~--------- 179 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIP--SYAFNR------IPSLRRLDLGELKRLSY-ISEG--------- 179 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEEC--TTTTTT------CTTCCEEECCCCTTCCE-ECTT---------
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCc-ccccC--HHHhhh------CcccCEeCCCCCCCcce-eCcc---------
Confidence 553 44444332 444555555555543 33333 2 1211 33455555544444433 2222
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCC
Q 045021 187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCA 265 (461)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~ 265 (461)
.+..+++|++|++++| .+..+|. +..+++|+.|++++| .+..+ +.....++
T Consensus 180 -------------------------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 180 -------------------------AFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLM 231 (440)
T ss_dssp -------------------------TTTTCSSCCEEECTTS-CCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCT
T ss_pred -------------------------hhhcccccCeecCCCC-cCccccc-cCCCcccCEEECCCC-ccCccChhhhccCc
Confidence 3334444444444443 2333332 344445555555544 22222 22333344
Q ss_pred CcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 266 KLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 266 ~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
+|++|++++|......+..+..+++|++|++++ .+..++.. ..+++|+.|++++|+
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 555555554332222233445555555555555 44444432 233555566655554
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.8e-17 Score=154.65 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=75.7
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccce-ecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceE
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLK-FLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKL 270 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L 270 (461)
++|+.|++.++......+..+..+++|++|++++|.... .+|..+..+++|++|++++|. +..+ +.....+++|++|
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEE
Confidence 345555555543333333445566677777777654332 356667777777777777763 3333 3344556677777
Q ss_pred eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--C-CCCCcceEEeecCc
Q 045021 271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--G-LPTNLHFLKIERNM 321 (461)
Q Consensus 271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~-~~~~L~~L~l~~~~ 321 (461)
++++|......+..+..+++|++|++++ .+...... . .+++|++|++++|+
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7777543222233567778888888887 55443322 2 23588888888876
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=4.6e-17 Score=160.51 Aligned_cols=238 Identities=18% Similarity=0.212 Sum_probs=180.8
Q ss_pred ccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccC
Q 045021 159 LEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLH 238 (461)
Q Consensus 159 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 238 (461)
...++..+ ..++. +|.+. + ++++.|++.++......+..+..+++|++|++++|......+..+.
T Consensus 56 ~~~v~c~~-~~l~~-iP~~~-~------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTR-RGLSE-VPQGI-P------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp SCEEECCS-SCCSS-CCSCC-C------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcEEEECC-CCcCc-cCCCC-C------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 45666666 56666 55432 2 4699999999644444466889999999999999844444457889
Q ss_pred CCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-ccCCCCCccEEEecc--cCCCcCCC--CCCCCc
Q 045021 239 NLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-GLHNLKSLKKLRIGG--KLPSLEED--GLPTNL 312 (461)
Q Consensus 239 ~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~~~~l~~L~~L~l~~--~~~~l~~~--~~~~~L 312 (461)
++++|++|++++| .+..++. ....+++|++|++++|. ++.++. .+..+++|++|++++ .+..++.. ..+++|
T Consensus 121 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 121 GLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 9999999999998 5666665 35567899999999965 455544 788999999999998 56666543 456899
Q ss_pred ceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhc
Q 045021 313 HFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDL 391 (461)
Q Consensus 313 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~ 391 (461)
++|++++|. +... + .+..+++|++|++++| .+..++...+ ..+++|++|+++++ .+..++ ..+..+
T Consensus 199 ~~L~L~~n~-l~~~-~--~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l 265 (452)
T 3zyi_A 199 KYLNLGMCN-IKDM-P--NLTPLVGLEELEMSGN--HFPEIRPGSF------HGLSSLKKLWVMNS-QVSLIERNAFDGL 265 (452)
T ss_dssp CEEECTTSC-CSSC-C--CCTTCTTCCEEECTTS--CCSEECGGGG------TTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred CEEECCCCc-cccc-c--cccccccccEEECcCC--cCcccCcccc------cCccCCCEEEeCCC-cCceECHHHhcCC
Confidence 999999997 3322 2 4778899999999998 7777755435 36789999999994 666654 667889
Q ss_pred cCCcEEEecCCCCCcccCCCCC--cccccEeeccCCch
Q 045021 392 QNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECPL 427 (461)
Q Consensus 392 ~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~~ 427 (461)
++|+.|++++ ++++.++...+ .++|++|+++++|.
T Consensus 266 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 266 ASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCC-CcCCccChHHhccccCCCEEEccCCCc
Confidence 9999999999 78888887543 68999999998863
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.2e-20 Score=184.98 Aligned_cols=343 Identities=19% Similarity=0.170 Sum_probs=218.7
Q ss_pred CCCcCEEEecCCcCcccccC---CCCCCCccEEEEeecCCcc-----ccCcccccCCCCcccEEEeeCCCCCccccc--c
Q 045021 52 LSSLREIEICRCHSLVSFPE---VALPSKLKKIEIRECDALK-----SLPEAWMCGTNSSLEILKIWSCHSLPYIAR--V 121 (461)
Q Consensus 52 l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~ 121 (461)
.++|++|+++++. +...+. +..+++|++|++++|. +. .++..+... ++|++|+++++ .+++... .
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n-~l~~~~~~~l 76 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN--PALAELNLRSN-ELGDVGVHCV 76 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC--TTCCEEECTTC-CCHHHHHHHH
T ss_pred Cccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC--CCcCEEeCCCC-cCChHHHHHH
Confidence 3579999999874 443322 5678999999999987 55 344444444 89999999985 4544211 1
Q ss_pred -CCCC----CccEEecccCCCce----EeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCC
Q 045021 122 -QLPP----SLKRLDISHCDNIR----TLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQP 192 (461)
Q Consensus 122 -~~~~----~L~~L~l~~~~~~~----~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 192 (461)
..++ +|++|++++|..-. .++ ..+.. +++|+.|++++ +.+.+ .....+... +....
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~--~~l~~------~~~L~~L~Ls~-n~i~~-~~~~~l~~~-----l~~~~ 141 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLS--STLRT------LPTLQELHLSD-NLLGD-AGLQLLCEG-----LLDPQ 141 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHH--HHTTS------CTTCCEEECCS-SBCHH-HHHHHHHHH-----HTSTT
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHH--HHHcc------CCceeEEECCC-CcCch-HHHHHHHHH-----HhcCC
Confidence 2233 79999999986221 233 33333 56899999998 55653 111111110 01112
Q ss_pred CCccEEEEecCCchh----hhHHhhcCCCccceeeccccccceecccccC-----CCCCccEEEecCCCCCcc-----CC
Q 045021 193 PSLKSLNVWSCSKLE----SIAERLDNNTSLEMISILWCENLKFLPSGLH-----NLRQLQEIQLWGCENLVS-----FP 258 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~-----l~ 258 (461)
++|++|++.+|..-. .++..+..+++|++|++++|..-...+..+. ..++|++|++++|. +.. ++
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence 479999999874333 2455677789999999998753222122221 35699999999983 333 23
Q ss_pred CCCCCCCCcceEeeccCccccc-----c-ccccCCCCCccEEEecc-cCCC-----cCCC-CCCCCcceEEeecCchhhH
Q 045021 259 EGGLPCAKLSKLGIYRCERLEA-----L-PKGLHNLKSLKKLRIGG-KLPS-----LEED-GLPTNLHFLKIERNMEIWK 325 (461)
Q Consensus 259 ~~~~~~~~L~~L~l~~c~~~~~-----~-~~~~~~l~~L~~L~l~~-~~~~-----l~~~-~~~~~L~~L~l~~~~~l~~ 325 (461)
.....+++|++|++++|. ++. + +..+..+++|++|++++ .+.. ++.. ..+++|++|++++|. +.+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 298 (461)
T 1z7x_W 221 GIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD 298 (461)
T ss_dssp HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred HHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-Cch
Confidence 333346799999999974 332 2 22334689999999998 5544 3322 336799999999997 433
Q ss_pred Hhhh----hcccCCCCcCEEEEecCCCccccc-----CccccccCCCCCCCCCcceeecCCCCCCcccc-cchhh-----
Q 045021 326 SMIE----RGFHKFSSLRHLTIEGCDDDMVSF-----PPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVD----- 390 (461)
Q Consensus 326 ~~~~----~~~~~l~~L~~L~l~~~~~~~~~i-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~----- 390 (461)
.... ......++|++|++++| .+... +.. + ...++|++|+++++ .+.... ..+..
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n--~l~~~~~~~l~~~-l------~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~ 368 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSV-L------AQNRFLLELQISNN-RLEDAGVRELCQGLGQP 368 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHH-H------HHCSSCCEEECCSS-BCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhccCCccceeeEcCCC--CCchHHHHHHHHH-H------hhCCCccEEEccCC-ccccccHHHHHHHHcCC
Confidence 2211 11233479999999998 44432 221 2 14579999999996 565432 22222
Q ss_pred ccCCcEEEecCCCCCcc-----cCCC-CCcccccEeeccCCchh
Q 045021 391 LQNLKYLKLYDCPKLKY-----FSEK-GLPSSLLRLYIDECPLI 428 (461)
Q Consensus 391 ~~~L~~L~l~~C~~l~~-----~~~~-~~~~~L~~L~i~~c~~l 428 (461)
.++|++|++++| .++. ++.. ...++|++|++++|+.-
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 679999999994 6763 3321 11589999999999643
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=4.8e-18 Score=168.69 Aligned_cols=245 Identities=12% Similarity=0.077 Sum_probs=162.2
Q ss_pred hhhhhhhhhcCCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccc
Q 045021 19 DQQQQLCELSCRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWM 97 (461)
Q Consensus 19 ~~l~~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 97 (461)
..+..+...+++|++|+++++. +..+ |..+..+++|++|++++| .+...++++.+++|++|++++|. +..++..
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-- 98 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG-- 98 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC--
T ss_pred HHHHHhcccCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC--
Confidence 3444443444799999999954 5655 568999999999999997 45555568899999999999976 7776644
Q ss_pred cCCCCcccEEEeeCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCC
Q 045021 98 CGTNSSLEILKIWSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKN 177 (461)
Q Consensus 98 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 177 (461)
++|+.|+++++ .++.++. ..+++|+.|+++++......| ..+.. +++|+.|++++ +.++. .+..
T Consensus 99 ----~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~~------l~~L~~L~Ls~-N~l~~-~~~~ 162 (487)
T 3oja_A 99 ----PSIETLHAANN-NISRVSC-SRGQGKKNIYLANNKITMLRD--LDEGC------RSRVQYLDLKL-NEIDT-VNFA 162 (487)
T ss_dssp ----TTCCEEECCSS-CCCCEEE-CCCSSCEEEECCSSCCCSGGG--BCGGG------GSSEEEEECTT-SCCCE-EEGG
T ss_pred ----CCcCEEECcCC-cCCCCCc-cccCCCCEEECCCCCCCCCCc--hhhcC------CCCCCEEECCC-CCCCC-cChH
Confidence 78999999985 5555544 346788888888875322223 33333 55788888887 66665 2222
Q ss_pred CCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC
Q 045021 178 ELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF 257 (461)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 257 (461)
.+... +++|+.|+++++. +..++ ....+++|++|++++| .+..+|..+..+++|+.|++++| .+..+
T Consensus 163 ~l~~~---------l~~L~~L~Ls~N~-l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l 229 (487)
T 3oja_A 163 ELAAS---------SDTLEHLNLQYNF-IYDVK-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI 229 (487)
T ss_dssp GGGGG---------TTTCCEEECTTSC-CCEEE-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEE
T ss_pred HHhhh---------CCcccEEecCCCc-ccccc-ccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCccc
Confidence 22111 1567777777753 33333 2334777777777776 45555656777777777777776 45556
Q ss_pred CCCCCCCCCcceEeeccCccc-cccccccCCCCCccEEEec
Q 045021 258 PEGGLPCAKLSKLGIYRCERL-EALPKGLHNLKSLKKLRIG 297 (461)
Q Consensus 258 ~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~ 297 (461)
|.....+++|+.|++++|... ..+|..+..++.|+.+++.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 665555667777777775543 2445556666666666554
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.4e-17 Score=151.20 Aligned_cols=179 Identities=24% Similarity=0.270 Sum_probs=93.0
Q ss_pred hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEeeccCccccccccccCCCCC
Q 045021 212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLGIYRCERLEALPKGLHNLKS 290 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~ 290 (461)
.+..+++|++|+++++......+..+..+++|++|++++|..+..+ +.....+++|++|++++|......+..+..+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 3445555555555554222222445555555555555555434444 223334455566666554322222344555666
Q ss_pred ccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCC
Q 045021 291 LKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLP 367 (461)
Q Consensus 291 L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~ 367 (461)
|++|++++ .+..++.. ..+++|++|++++|. ++ ..+...+..+++|++|++++| .+..+....+ ..+
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l 200 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-IS-SVPERAFRGLHSLDRLLLHQN--RVAHVHPHAF------RDL 200 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-EECTTTTTTCTTCCEEECCSS--CCCEECTTTT------TTC
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCc-cc-ccCHHHhcCccccCEEECCCC--cccccCHhHc------cCc
Confidence 66666665 44444432 334566666666664 22 122223555667777777765 4554433213 245
Q ss_pred CCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 368 ASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
++|+.|+++++ .+..++ ..+..+++|+.|++++
T Consensus 201 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 201 GRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp TTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred ccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 56777777763 555554 3456667777777776
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=4.3e-17 Score=146.39 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=132.4
Q ss_pred ccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccc-cccCCCCCccEE
Q 045021 218 SLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKL 294 (461)
Q Consensus 218 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L 294 (461)
+|++|+++++ .+..++ ..+..+++|++|++++|..+..++. ....+++|++|++++|+.++.++ ..+..+++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4445555443 233333 2455566666666666543444443 23345566666666644555554 356677777777
Q ss_pred Eecc-cCCCcCCCCCCCCcc---eEEeecCchhhHHhhhhcccCCCCcC-EEEEecCCCcccccCccccccCCCCCCCCC
Q 045021 295 RIGG-KLPSLEEDGLPTNLH---FLKIERNMEIWKSMIERGFHKFSSLR-HLTIEGCDDDMVSFPPEDRRLGTTLPLPAS 369 (461)
Q Consensus 295 ~l~~-~~~~l~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 369 (461)
++++ .+..++....+++|+ +|++++|..++. .+...+..+++|+ +|++++| ++..++...+ ..++
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n--~l~~i~~~~~-------~~~~ 180 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNN--GFTSVQGYAF-------NGTK 180 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSC--CCCEECTTTT-------TTCE
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCC--CCcccCHhhc-------CCCC
Confidence 7777 666666555556666 899998843442 2333577899999 9999997 7888887633 2368
Q ss_pred cceeecCCCCCCcccc-cchhhc-cCCcEEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 370 LASLTIGDFPNLERLS-SSIVDL-QNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 370 L~~L~l~~~~~l~~i~-~~~~~~-~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
|++|++++++.++.++ ..+..+ ++|+.|++++ ++++.+|.. .+++|+.|+++++..
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence 9999999965688886 567788 9999999999 889998886 458999999998864
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.7e-16 Score=146.42 Aligned_cols=198 Identities=20% Similarity=0.230 Sum_probs=105.0
Q ss_pred cCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceec-cc
Q 045021 157 YLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFL-PS 235 (461)
Q Consensus 157 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~ 235 (461)
++++.|++++ +.++. ++...+... ++|++|++.++......+..+..+++|++|++++|..+..+ +.
T Consensus 32 ~~l~~L~l~~-n~i~~-~~~~~~~~~----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHG-NRISH-VPAASFRAC----------RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TTCSEEECTT-SCCCE-ECTTTTTTC----------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCceEEEeeC-CcCCc-cCHHHcccC----------CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4566666666 55555 443333222 45666666664222222445566666666666665434444 45
Q ss_pred ccCCCCCccEEEecCCCCCccC-CCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCC
Q 045021 236 GLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPT 310 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~ 310 (461)
.+..+++|++|++++|. +..+ +.....+++|++|++++|. ++.++ ..+..+++|++|++++ .+..++.. ..++
T Consensus 100 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred HhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 56666666666666653 3333 2333445566666666643 33332 2455666666666666 55554432 3445
Q ss_pred CcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCC
Q 045021 311 NLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDF 378 (461)
Q Consensus 311 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 378 (461)
+|++|++++|. +... ....+..+++|++|++++| .+..++...+ ..+++|+.|+++++
T Consensus 178 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHV-HPHAFRDLGRLMTLYLFAN--NLSALPTEAL------APLRALQYLRLNDN 235 (285)
T ss_dssp TCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS--CCSCCCHHHH------TTCTTCCEEECCSS
T ss_pred ccCEEECCCCc-cccc-CHhHccCcccccEeeCCCC--cCCcCCHHHc------ccCcccCEEeccCC
Confidence 66666666665 2211 1223555666666666665 5555554323 24456666666663
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=6.9e-17 Score=151.45 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=81.6
Q ss_pred hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021 212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL 291 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L 291 (461)
.+..+++|++|++++|. +...+. +..+++|++|++++| .+..++. .++|++|++++|. ++.++ ...+++|
T Consensus 53 ~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l~~n~-l~~~~--~~~~~~L 122 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNN-ISRVS--CSRGQGK 122 (317)
T ss_dssp HHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSC-CSEEE--ECCCSSC
T ss_pred HhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCEEECCCCc-cCCcC--ccccCCC
Confidence 44444455555554442 221221 444445555555444 2222221 1345555554432 22222 1224445
Q ss_pred cEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021 292 KKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA 368 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (461)
++|++++ .+..++.. ..+++|++|++++|. +....+......+++|++|++++| .+..++.. ..++
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~--------~~l~ 191 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN--FIYDVKGQ--------VVFA 191 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS--CCCEEECC--------CCCT
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC--cCcccccc--------cccc
Confidence 5555555 44333322 223455555555544 221111111234455555555554 44444332 1344
Q ss_pred CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCCc
Q 045021 369 SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDECP 426 (461)
Q Consensus 369 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c~ 426 (461)
+|++|++++ +.++.++..+..+++|++|++++ +.++.+|.. ...++|+.|++++|+
T Consensus 192 ~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 192 KLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCC
Confidence 555555555 24444444445555555555555 445544442 113455555555543
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.1e-15 Score=143.32 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=63.1
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc-ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS-GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (461)
.++.|++.+ ..+..++.......+|+++.+.++..+..+|. .+..+++|+.|++++| .+..+|... +.+|+.|.+
T Consensus 155 ~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~--~~~L~~L~~ 230 (350)
T 4ay9_X 155 ESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG--LENLKKLRA 230 (350)
T ss_dssp SCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS--CTTCCEEEC
T ss_pred hhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh--hccchHhhh
Confidence 356666665 34444444444456677777766556666663 4677777788888776 566666543 336777777
Q ss_pred ccCccccccccccCCCCCccEEEecc
Q 045021 273 YRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 273 ~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
.++..++.+|. +..+++|+.+++.+
T Consensus 231 l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 231 RSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ccCCCcCcCCC-chhCcChhhCcCCC
Confidence 77777777764 66666666666644
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1.4e-15 Score=136.52 Aligned_cols=205 Identities=15% Similarity=0.231 Sum_probs=118.5
Q ss_pred cccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEecc
Q 045021 66 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTV 143 (461)
Q Consensus 66 l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~ 143 (461)
++.+|. ...+|++|+++++. ++.++...+.. +++|+.|+++++..++.++.. ..+++|++|++++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~--------- 89 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETH-LRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN--------- 89 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCC-CSEECTTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE---------
T ss_pred ccccCC--CCCcccEEEEeCCc-ceEECHHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC---------
Confidence 555554 44466666666644 55555532221 256666666654334444332 3344444444444
Q ss_pred CCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccc---
Q 045021 144 EDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLE--- 220 (461)
Q Consensus 144 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~--- 220 (461)
|+.++. ++...+... ++|+.|++.++ .+..++. +..+++|+
T Consensus 90 -----------------------~n~l~~-i~~~~f~~l----------~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 90 -----------------------TRNLTY-IDPDALKEL----------PLLKFLGIFNT-GLKMFPD-LTKVYSTDIFF 133 (239)
T ss_dssp -----------------------ETTCCE-ECTTSEECC----------TTCCEEEEEEE-CCCSCCC-CTTCCBCCSEE
T ss_pred -----------------------CCCeeE-cCHHHhCCC----------CCCCEEeCCCC-CCccccc-ccccccccccc
Confidence 344443 332222211 34555555553 2333333 45555555
Q ss_pred eeeccccccceecc-cccCCCCCcc-EEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCC-CCccEEEe
Q 045021 221 MISILWCENLKFLP-SGLHNLRQLQ-EIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNL-KSLKKLRI 296 (461)
Q Consensus 221 ~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l-~~L~~L~l 296 (461)
+|++++|..+..++ ..+..+++|+ .|++++| .+..++...+..++|++|++++|..++.++ ..+..+ ++|++|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 77777764555554 3577788888 8888876 455666644444678888888875566664 356777 88888888
Q ss_pred cc-cCCCcCCCCCCCCcceEEeecCc
Q 045021 297 GG-KLPSLEEDGLPTNLHFLKIERNM 321 (461)
Q Consensus 297 ~~-~~~~l~~~~~~~~L~~L~l~~~~ 321 (461)
++ .+..++.. .+++|+.|++.++.
T Consensus 213 ~~N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred CCCccccCChh-HhccCceeeccCcc
Confidence 88 77777655 56678888877765
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.5e-16 Score=156.31 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCc
Q 045021 212 RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSL 291 (461)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L 291 (461)
.+..+++|++|++++|. +...++ +..+++|++|++++| .+..++. .++|++|++++|. ++.++. ..+++|
T Consensus 53 ~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L 122 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANNN-ISRVSC--SRGQGK 122 (487)
T ss_dssp GGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSC
T ss_pred HHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCC
Confidence 44444555555554442 221111 444455555555544 2232221 1345555555432 222221 233445
Q ss_pred cEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCC
Q 045021 292 KKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPA 368 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~ 368 (461)
++|++++ .+..++.. ..+++|++|++++|. +....+......+++|++|++++| .+..++.. ..++
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N--~l~~~~~~--------~~l~ 191 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN--FIYDVKGQ--------VVFA 191 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS--CCCEEECC--------CCCT
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCC--cccccccc--------ccCC
Confidence 5555555 33333221 223455555555554 221122211224555555555555 44444332 1344
Q ss_pred CcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCC-CCcccccEeeccCCc
Q 045021 369 SLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEK-GLPSSLLRLYIDECP 426 (461)
Q Consensus 369 ~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~-~~~~~L~~L~i~~c~ 426 (461)
+|+.|++++ +.+..++..+..+++|+.|++++ +.++.+|.. ..+++|+.|++++|+
T Consensus 192 ~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 192 KLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 555555555 34555544455555555555555 455555442 123555555555554
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=4e-18 Score=159.53 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=126.8
Q ss_pred CCCccceeeccccccceeccccc--CCCCCccEEEecCCCCCccCCCCCCCC-----CCcceEeeccCccccccccccCC
Q 045021 215 NNTSLEMISILWCENLKFLPSGL--HNLRQLQEIQLWGCENLVSFPEGGLPC-----AKLSKLGIYRCERLEALPKGLHN 287 (461)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~c~~~~~~~~~~~~ 287 (461)
.+++|++|++++|.....+|..+ ..+++|++|++++| .+...+.....+ ++|++|++++|.-....+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56677777777764444555554 66777777777776 334333322111 57777777775433333356777
Q ss_pred CCCccEEEecc-cCCC----cCCC--CCCCCcceEEeecCchhh-HHhhhhcccCCCCcCEEEEecCCCcccccC-cccc
Q 045021 288 LKSLKKLRIGG-KLPS----LEED--GLPTNLHFLKIERNMEIW-KSMIERGFHKFSSLRHLTIEGCDDDMVSFP-PEDR 358 (461)
Q Consensus 288 l~~L~~L~l~~-~~~~----l~~~--~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~-~~~~ 358 (461)
+++|++|++++ .+.. .+.. ..+++|++|++++|..-. .......+..+++|++|++++| .+...+ ...+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN--SLRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS--CCCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC--cCCcccchhhh
Confidence 77777777777 4321 1112 455678888888876321 1222234567788889998887 565543 2212
Q ss_pred ccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCc
Q 045021 359 RLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECP 426 (461)
Q Consensus 359 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~ 426 (461)
..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|.-...++|++|++++++
T Consensus 250 ------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 ------DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred ------hhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 2467888999988 46778876554 7888999988 788888664446888888888875
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.6e-15 Score=144.18 Aligned_cols=236 Identities=18% Similarity=0.191 Sum_probs=160.0
Q ss_pred EEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh
Q 045021 129 RLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES 208 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 208 (461)
+++.++ ..++++| .++. +++++|++++ ++++. ++.+.+... ++|++|+++++...+.
T Consensus 13 ~v~C~~-~~Lt~iP--~~l~--------~~l~~L~Ls~-N~i~~-i~~~~f~~l----------~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 13 VFLCQE-SKVTEIP--SDLP--------RNAIELRFVL-TKLRV-IQKGAFSGF----------GDLEKIEISQNDVLEV 69 (350)
T ss_dssp EEEEES-TTCCSCC--TTCC--------TTCSEEEEES-CCCSE-ECTTSSTTC----------TTCCEEEEECCTTCCE
T ss_pred EEEecC-CCCCccC--cCcC--------CCCCEEEccC-CcCCC-cCHHHHcCC----------CCCCEEECcCCCCCCc
Confidence 344444 2355666 5442 2677788877 77777 665555443 5788888887655555
Q ss_pred hHH-hhcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCcccccccc-c
Q 045021 209 IAE-RLDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPK-G 284 (461)
Q Consensus 209 ~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~-~ 284 (461)
++. .+..+++++++....+..+..+ +..+..+++|++|++++| .+..++. .......+..+++.++..+..++. .
T Consensus 70 i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred cChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccc
Confidence 543 5677777776555444456555 467788888999988887 4555554 333445677888877777776654 4
Q ss_pred cCCC-CCccEEEecc-cCCCcCCCC-CCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021 285 LHNL-KSLKKLRIGG-KLPSLEEDG-LPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361 (461)
Q Consensus 285 ~~~l-~~L~~L~l~~-~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~ 361 (461)
+..+ ..++.|++++ .++.++... ...+|+++++.++..++ ..+...+..+++|++|++++| .+..+|..
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~----- 220 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRT--RIHSLPSY----- 220 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTS--CCCCCCSS-----
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCC--CcCccChh-----
Confidence 4454 4688888888 777776552 34578888887766554 233345778888889999887 78888875
Q ss_pred CCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecC
Q 045021 362 TTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYD 401 (461)
Q Consensus 362 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~ 401 (461)
.+.+|+.|.+.+++.++.+| .+..+++|+.+++.+
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ----hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 55688888888888888886 467788888888865
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=3.2e-16 Score=146.58 Aligned_cols=202 Identities=19% Similarity=0.120 Sum_probs=115.0
Q ss_pred CCCCccEEEecCCCCCccCCCCC--CCCCCcceEeeccCccccccccccCCC-----CCccEEEecc-cCCCcCCC--CC
Q 045021 239 NLRQLQEIQLWGCENLVSFPEGG--LPCAKLSKLGIYRCERLEALPKGLHNL-----KSLKKLRIGG-KLPSLEED--GL 308 (461)
Q Consensus 239 ~l~~L~~L~l~~~~~l~~l~~~~--~~~~~L~~L~l~~c~~~~~~~~~~~~l-----~~L~~L~l~~-~~~~l~~~--~~ 308 (461)
.+++|++|++++|.....++... ..+++|++|++++|. ++.+|..++.+ ++|++|++++ .+..++.. ..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46777777777764333455433 456677777777753 33335545444 6777777777 55555522 45
Q ss_pred CCCcceEEeecCchhhHH--hhhhcccCCCCcCEEEEecCCCcccccC---ccccccCCCCCCCCCcceeecCCCCCCcc
Q 045021 309 PTNLHFLKIERNMEIWKS--MIERGFHKFSSLRHLTIEGCDDDMVSFP---PEDRRLGTTLPLPASLASLTIGDFPNLER 383 (461)
Q Consensus 309 ~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~i~---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 383 (461)
+++|++|++++|...... .....+..+++|++|++++| .+..++ ...+ ..+++|++|+++++ .+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA--GMETPSGVCSALA------AARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS--CCCCHHHHHHHHH------HTTCCCSEEECTTS-CCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC--cCcchHHHHHHHH------hcCCCCCEEECCCC-cCCc
Confidence 667777777777632211 11112366777777777776 554322 2111 13457777777773 4544
Q ss_pred cc--cchhhccCCcEEEecCCCCCcccCCCCCcccccEeeccCCchhHHhhcccCccccccccccceEEEcccEEecC
Q 045021 384 LS--SSIVDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDECPLIEEKCRKDGEQYWDLLTHIPRVRIHLPVVFDD 459 (461)
Q Consensus 384 i~--~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (461)
.+ ..+..+++|++|++++ ++++.+|.... ++|++|++++|..- .. +.+..+.++..+++.+|.+.+.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N~l~-----~~--p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYNRLD-----RN--PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSSCCC-----SC--CCTTTSCEEEEEECTTCTTTCC
T ss_pred ccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCCCCC-----CC--hhHhhCCCCCEEeccCCCCCCC
Confidence 32 3344567777777777 56666665333 67777777776321 11 2244556666667777665543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=2.1e-15 Score=140.67 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=147.5
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (461)
++|++|++.++ .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. +..++ ....+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 57999999885 455554 5778899999999987 5555555 8888999999999884 55554 3445678999999
Q ss_pred ccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCccc
Q 045021 273 YRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMV 351 (461)
Q Consensus 273 ~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 351 (461)
++|. ++.++. +..+++|++|++++ .+..++....+++|++|++++|. +.+.. .+..+++|++|++++| .+.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n--~l~ 186 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDLT---PLANLSKLTTLKADDN--KIS 186 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS--CCC
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc-CCCCh---hhcCCCCCCEEECCCC--ccC
Confidence 9864 555654 88899999999998 77777666677889999999886 33222 2678899999999987 676
Q ss_pred ccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 352 SFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
.++. + ..+++|++|+++++ .+..++ .+..+++|+.|++++ +.++..|.
T Consensus 187 ~~~~--l------~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 187 DISP--L------ASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp CCGG--G------GGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred cChh--h------cCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence 6665 2 36679999999984 677775 478889999999998 66776555
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=4.5e-15 Score=136.24 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=120.4
Q ss_pred CCccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCC-CCCCCCCCcceE
Q 045021 193 PSLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFP-EGGLPCAKLSKL 270 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L 270 (461)
+++++|+++++ .+..++ ..+..+++|++|++++|......+..+..+++|++|++++|. +..++ .....+++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 45888888885 344433 367788888888888873333334567888888888888873 44443 345566788888
Q ss_pred eeccCccccccccccCCCCCccEEEecc-cCCC--cCCC-CCCCCcceEEeecCchhhHHhhhhcccCCCCcC----EEE
Q 045021 271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS--LEED-GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLR----HLT 342 (461)
Q Consensus 271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~--l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~----~L~ 342 (461)
++.+|......+..+..+++|++|++++ .+.. ++.. ..+++|++|++++|.. +.. +...+..+++|+ +|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSI-YCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEE-CGGGGHHHHTCTTCCEEEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcC-CHHHhhhhhhccccceeee
Confidence 8887643332233577788888888877 5554 2322 4456777777777752 211 111233333333 677
Q ss_pred EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecC
Q 045021 343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYD 401 (461)
Q Consensus 343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~ 401 (461)
+++| .+..++...+ ...+|++|+++++ .++.++. .+..+++|+.|++++
T Consensus 184 ls~n--~l~~~~~~~~-------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 184 LSLN--PMNFIQPGAF-------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCSS--CCCEECTTSS-------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred cCCC--cccccCcccc-------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 7776 5666655422 2336777777773 5666653 346677777777776
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=6.1e-15 Score=136.12 Aligned_cols=193 Identities=18% Similarity=0.134 Sum_probs=136.7
Q ss_pred ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc
Q 045021 156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS 235 (461)
Q Consensus 156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 235 (461)
+++++.+++++ +.++. +|.... ++++.|++.++......+..+..+++|++|+++++ .+..++.
T Consensus 9 l~~l~~l~~~~-~~l~~-ip~~~~-------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 72 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTA-LPPDLP-------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV 72 (290)
T ss_dssp STTCCEEECTT-SCCSS-CCSCCC-------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred cCCccEEECCC-CCCCc-CCCCCC-------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC
Confidence 56788898888 77776 554432 35889999886543334567888899999999886 4555554
Q ss_pred ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCC
Q 045021 236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTN 311 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~ 311 (461)
. +.+++|++|++++| .+..++.....+++|++|++++| .++.++ ..+..+++|++|++++ .+..++.. ..+++
T Consensus 73 ~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp C-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred C-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 3 67888999999887 56677776677778899998885 455554 4678888888888888 77766654 34567
Q ss_pred cceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCC
Q 045021 312 LHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDF 378 (461)
Q Consensus 312 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 378 (461)
|+.|++++|. ++ ..+...+..+++|++|++++| .+..++.. + ...++|+.|+++++
T Consensus 150 L~~L~L~~N~-l~-~l~~~~~~~l~~L~~L~L~~N--~l~~ip~~-~------~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 150 LEKLSLANNN-LT-ELPAGLLNGLENLDTLLLQEN--SLYTIPKG-F------FGSHLLPFAFLHGN 205 (290)
T ss_dssp CCEEECTTSC-CS-CCCTTTTTTCTTCCEEECCSS--CCCCCCTT-T------TTTCCCSEEECCSC
T ss_pred CCEEECCCCc-CC-ccCHHHhcCcCCCCEEECCCC--cCCccChh-h------cccccCCeEEeCCC
Confidence 8888888776 33 233334566778888888876 67777765 3 13457788888764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.1e-14 Score=131.21 Aligned_cols=191 Identities=25% Similarity=0.352 Sum_probs=106.9
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCCC-CCCCCcceEe
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEGG-LPCAKLSKLG 271 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 271 (461)
+.+.+++.+ ..++.+|..+ .+++++|+++++. +..++ ..+..+++|++|++++| .+..++... ..+++|++|+
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNI--PADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCC--CTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccC-CCCCccCCCC--CCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 456676666 3455554333 2567777777653 43343 46677777777777776 445555433 4466777777
Q ss_pred eccCccccccc-cccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCC
Q 045021 272 IYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCD 347 (461)
Q Consensus 272 l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 347 (461)
+++|. ++.++ ..+..+++|++|++++ .+..++.. ..+++|++|++++|. +. ..+...+..+++|++|++++|
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~L~~n- 167 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQ-SLPKGVFDKLTSLKELRLYNN- 167 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS-
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CC-ccCHhHccCCcccceeEecCC-
Confidence 77653 33443 3456677777777766 55555432 345566666666664 22 122223455666666666665
Q ss_pred CcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecC
Q 045021 348 DDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYD 401 (461)
Q Consensus 348 ~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~ 401 (461)
.+..++...+ ..+++|+.|+++++ .++.++. .+..+++|+.|++++
T Consensus 168 -~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 168 -QLKRVPEGAF------DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -CCSCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred -cCcEeChhHh------ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 5555554322 23456666666663 4555542 345566666666665
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.1e-14 Score=131.30 Aligned_cols=194 Identities=20% Similarity=0.223 Sum_probs=107.4
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 106 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 106 (461)
.+.+.+++++ .+++.+|..+. ++|++|+++++ .+..++. +..+++|++|+++++. ++.++...+.. +++|++
T Consensus 16 ~~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~-l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKE-LKNLET 89 (270)
T ss_dssp TTTTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSS-CTTCCE
T ss_pred CCCCEEEccC-CCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcC-CCCCCE
Confidence 4567888877 55677776554 67888888886 4566664 7778888888888865 66766654332 377778
Q ss_pred EEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021 107 LKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE 184 (461)
Q Consensus 107 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 184 (461)
|+++++ .++.++.. ..+++|++|+++++. +..++. ..+.. +++|+.|++++ +.++. ++..
T Consensus 90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~------l~~L~~L~Ls~-n~l~~-~~~~------- 151 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPP-RVFDS------LTKLTYLSLGY-NELQS-LPKG------- 151 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTT------CTTCCEEECCS-SCCCC-CCTT-------
T ss_pred EECCCC-cCCcCCHhHcccccCCCEEECCCCc-cCeeCH-HHhCc------CcCCCEEECCC-CcCCc-cCHh-------
Confidence 777774 34444432 345556666665543 222220 11111 33455555544 33333 2221
Q ss_pred hcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCC
Q 045021 185 SLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGL 262 (461)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~ 262 (461)
.+..+++|++|++++| .+..++ ..+..+++|+.|++++| .+..++. ...
T Consensus 152 ---------------------------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 202 (270)
T 2o6q_A 152 ---------------------------VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFD 202 (270)
T ss_dssp ---------------------------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred ---------------------------HccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhc
Confidence 3445555555555554 232232 34555666666666665 3444443 233
Q ss_pred CCCCcceEeeccC
Q 045021 263 PCAKLSKLGIYRC 275 (461)
Q Consensus 263 ~~~~L~~L~l~~c 275 (461)
.+++|+.|++++|
T Consensus 203 ~l~~L~~L~l~~N 215 (270)
T 2o6q_A 203 SLEKLKMLQLQEN 215 (270)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEEecCC
Confidence 3556666666654
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=6.2e-15 Score=135.29 Aligned_cols=196 Identities=21% Similarity=0.242 Sum_probs=136.6
Q ss_pred Cccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021 217 TSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294 (461)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L 294 (461)
++|++|+++++ .+..++ ..+..+++|++|++++| .+..++. ....+++|++|++++|.-....+..+..+++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 57888998887 444444 47888889999999887 4555544 45567789999998865433334568888899999
Q ss_pred Eecc-cCCCcCC--CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021 295 RIGG-KLPSLEE--DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA 371 (461)
Q Consensus 295 ~l~~-~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~ 371 (461)
++++ .+..++. ...+++|++|++++|. +........+..+++|++|++++| .+..++...++ .+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~------~l~~L~ 176 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLR------VLHQMP 176 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGGH------HHHTCT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC--CCCcCCHHHhh------hhhhcc
Confidence 9888 6666554 3556789999998887 222111235677889999999887 67666554232 334455
Q ss_pred ----eeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCC
Q 045021 372 ----SLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDEC 425 (461)
Q Consensus 372 ----~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c 425 (461)
+|++++ +.+..++.......+|++|++++ ++++.++...+ .++|++|+++++
T Consensus 177 ~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 177 LLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 788888 56777765555556889999988 66888776432 578888988843
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.5e-15 Score=138.62 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=146.6
Q ss_pred CccEEEEecCCchhh-hHH--hhcCCCccceeeccccccceeccccc--CCCCCccEEEecCCCCCccCCC----CCCCC
Q 045021 194 SLKSLNVWSCSKLES-IAE--RLDNNTSLEMISILWCENLKFLPSGL--HNLRQLQEIQLWGCENLVSFPE----GGLPC 264 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~l~~----~~~~~ 264 (461)
.++.+.+.++..... +.. ....+++|++|++++|......|..+ ..+++|++|++++|......+. ....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 366777766432211 111 12234679999998886555666666 7888999999998854332221 12246
Q ss_pred CCcceEeeccCccccccccccCCCCCccEEEecc-cCCC---cCC---CCCCCCcceEEeecCchhh-HHhhhhcccCCC
Q 045021 265 AKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS---LEE---DGLPTNLHFLKIERNMEIW-KSMIERGFHKFS 336 (461)
Q Consensus 265 ~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~---l~~---~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~ 336 (461)
++|++|++++|.-....+..+..+++|++|++++ .+.. ++. ...+++|++|++++|..-. .....+.+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 6899999988765444456788889999999988 4432 221 1456789999999887321 111122346788
Q ss_pred CcCEEEEecCCCccccc-CccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcccCCCCCcc
Q 045021 337 SLRHLTIEGCDDDMVSF-PPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSEKGLPS 415 (461)
Q Consensus 337 ~L~~L~l~~~~~~~~~i-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~~~ 415 (461)
+|++|++++| .+..+ |.. ++ ....+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|....++
T Consensus 225 ~L~~L~Ls~N--~l~~~~p~~-~~---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~ 294 (310)
T 4glp_A 225 QPHSLDLSHN--SLRATVNPS-AP---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELP 294 (310)
T ss_dssp CCSSEECTTS--CCCCCCCSC-CS---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCC
T ss_pred CCCEEECCCC--CCCccchhh-HH---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCC
Confidence 9999999987 66655 433 21 001236899999988 47778876553 7899999988 7888776644468
Q ss_pred cccEeeccCCc
Q 045021 416 SLLRLYIDECP 426 (461)
Q Consensus 416 ~L~~L~i~~c~ 426 (461)
+|++|++++++
T Consensus 295 ~L~~L~L~~N~ 305 (310)
T 4glp_A 295 EVDNLTLDGNP 305 (310)
T ss_dssp CCSCEECSSTT
T ss_pred CccEEECcCCC
Confidence 88888888875
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=5.1e-15 Score=138.00 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=133.9
Q ss_pred ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceeccc
Q 045021 156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPS 235 (461)
Q Consensus 156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 235 (461)
+++|+.|++++ ..++. ++. +.. +++|+.|+++++ .+..++. +..+++|++|++++|. +..++
T Consensus 40 l~~L~~L~l~~-~~i~~-l~~--~~~----------l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFG-TGVTT-IEG--VQY----------LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHTCCEEECTT-SCCCC-CTT--GGG----------CTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred cCCcCEEEeeC-CCccC-chh--hhc----------cCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-
Confidence 56788888888 46655 331 222 267888888885 4444544 7788888888888764 55544
Q ss_pred ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcce
Q 045021 236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHF 314 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~ 314 (461)
.+..+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|++
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence 5777888888888887 4555543 445678888888885 4555554 77888888888888 6766666666778888
Q ss_pred EEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021 315 LKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS 385 (461)
Q Consensus 315 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 385 (461)
|++++|. +.... .+..+++|++|++++| .+..++. + ..+++|+.|+++++ .+...+
T Consensus 178 L~l~~n~-l~~~~---~l~~l~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 178 LKADDNK-ISDIS---PLASLPNLIEVHLKNN--QISDVSP--L------ANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp EECCSSC-CCCCG---GGGGCTTCCEEECTTS--CCCBCGG--G------TTCTTCCEEEEEEE-EEECCC
T ss_pred EECCCCc-cCcCh---hhcCCCCCCEEEccCC--ccCcccc--c------cCCCCCCEEEccCC-eeecCC
Confidence 8888886 33222 2677888888888887 6666654 3 36678888888884 555554
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=2.5e-14 Score=132.07 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 106 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 106 (461)
++++++++++ .++..+|..+. +++++|++++| .+..++. +..+++|++|+++++. +..++.. . .+++|+.
T Consensus 10 ~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~--~l~~L~~ 81 (290)
T 1p9a_G 10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-G--TLPVLGT 81 (290)
T ss_dssp TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-S--CCTTCCE
T ss_pred CCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-C--CCCcCCE
Confidence 6666666666 44556665443 56666666665 3343332 5556666666666643 4444332 1 1244455
Q ss_pred EEeeC
Q 045021 107 LKIWS 111 (461)
Q Consensus 107 L~l~~ 111 (461)
|++++
T Consensus 82 L~Ls~ 86 (290)
T 1p9a_G 82 LDLSH 86 (290)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44444
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=2.1e-16 Score=149.47 Aligned_cols=226 Identities=13% Similarity=0.122 Sum_probs=121.0
Q ss_pred cCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhh-hHHhhcCCCccceeeccccccceeccc
Q 045021 157 YLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLES-IAERLDNNTSLEMISILWCENLKFLPS 235 (461)
Q Consensus 157 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 235 (461)
++++.+++.+ +.+.. .....+ . +++|++|+++++..... ++..+..+++|++|++++|......+.
T Consensus 70 ~~l~~L~l~~-n~l~~-~~~~~~-~----------~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 70 QGVIAFRCPR-SFMDQ-PLAEHF-S----------PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp TTCSEEECTT-CEECS-CCCSCC-C----------CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred ccceEEEcCC-ccccc-cchhhc-c----------CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 5778888777 55444 111111 1 25677777777642222 555667777777777777643334455
Q ss_pred ccCCCCCccEEEecCCCCCcc--CCCCCCCCCCcceEeeccCccccc--cccccCCCCCccEEEecccCCCcCCCCCCCC
Q 045021 236 GLHNLRQLQEIQLWGCENLVS--FPEGGLPCAKLSKLGIYRCERLEA--LPKGLHNLKSLKKLRIGGKLPSLEEDGLPTN 311 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~~~~--~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~ 311 (461)
.++.+++|++|++++|..+.. ++.....+++|++|++++|..++. ++..+..++ ++
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~--------------------~~ 196 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--------------------ET 196 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC--------------------TT
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc--------------------cC
Confidence 566667777777777643332 222233345666666666533332 233333343 15
Q ss_pred cceEEeecCc-hhhHHhhhhcccCCCCcCEEEEecCCCccc-ccCccccccCCCCCCCCCcceeecCCCCCCccc-ccch
Q 045021 312 LHFLKIERNM-EIWKSMIERGFHKFSSLRHLTIEGCDDDMV-SFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSI 388 (461)
Q Consensus 312 L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~ 388 (461)
|++|++++|. .+++......+..+++|++|++++| ..+. ..+.. ++ ..++|++|++++|..+... ...+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~-l~------~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS-VMLKNDCFQE-FF------QLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC-TTCCGGGGGG-GG------GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC-CcCCHHHHHH-Hh------CCCCCCEeeCCCCCCCCHHHHHHH
Confidence 5666666664 2332222224556777888888776 2132 22222 32 4467888888877543221 1346
Q ss_pred hhccCCcEEEecCCCCCcccCCCCCcccccEeeccCC
Q 045021 389 VDLQNLKYLKLYDCPKLKYFSEKGLPSSLLRLYIDEC 425 (461)
Q Consensus 389 ~~~~~L~~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c 425 (461)
..+++|+.|++++| ++.-....+...++.|++++|
T Consensus 269 ~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 269 GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCC
T ss_pred hcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecc
Confidence 67778888888876 222111112245677777544
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=4.5e-16 Score=147.23 Aligned_cols=220 Identities=14% Similarity=0.118 Sum_probs=152.5
Q ss_pred ccEEEEecCCchhhhHHhhcCC--CccceeeccccccceecccccCCCCCccEEEecCCCCCcc-CCCCCCCCCCcceEe
Q 045021 195 LKSLNVWSCSKLESIAERLDNN--TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVS-FPEGGLPCAKLSKLG 271 (461)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~ 271 (461)
++.+++.++... +..+..+ ++++.|++.++. +...+..+..+++|++|++++|..... ++.....+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 677777764322 2334444 688888888763 433344466788999999998742212 444455677899999
Q ss_pred eccCccccccccccCCCCCccEEEecc--cCCC--cCC-CCCCCCcceEEeecCchhhHHhhhhcccCCC-CcCEEEEec
Q 045021 272 IYRCERLEALPKGLHNLKSLKKLRIGG--KLPS--LEE-DGLPTNLHFLKIERNMEIWKSMIERGFHKFS-SLRHLTIEG 345 (461)
Q Consensus 272 l~~c~~~~~~~~~~~~l~~L~~L~l~~--~~~~--l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~ 345 (461)
+++|......+..+..+++|++|++++ .+.. ++. ...+++|++|++++|..+++......+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 998854445566788899999999988 3432 333 2456799999999995566543344577899 999999999
Q ss_pred CCCcc--cccCccccccCCCCCCCCCcceeecCCCCCCc-ccccchhhccCCcEEEecCCCCCcccCCC--CCcccccEe
Q 045021 346 CDDDM--VSFPPEDRRLGTTLPLPASLASLTIGDFPNLE-RLSSSIVDLQNLKYLKLYDCPKLKYFSEK--GLPSSLLRL 420 (461)
Q Consensus 346 ~~~~~--~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~C~~l~~~~~~--~~~~~L~~L 420 (461)
|...+ ..++.. + ..+++|++|++++|..++ ..+..+..+++|++|++++|..+...... ...++|++|
T Consensus 205 ~~~~~~~~~l~~~-~------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 205 YRKNLQKSDLSTL-V------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CGGGSCHHHHHHH-H------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CcccCCHHHHHHH-H------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 81122 334443 2 256799999999986554 44567889999999999998765543221 226899999
Q ss_pred eccCC
Q 045021 421 YIDEC 425 (461)
Q Consensus 421 ~i~~c 425 (461)
++++|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 99999
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.4e-14 Score=132.63 Aligned_cols=205 Identities=14% Similarity=0.106 Sum_probs=110.3
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
++|++|+++++. +..++. +..+++|++|++++| .+..++.+..+++|++|++++|. ++.++...+.. +++|++|+
T Consensus 41 ~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~-l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVFDK-LTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred cceeeeeeCCCC-cccccc-cccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHhcC-CcCCCEEE
Confidence 666666666632 344443 556666666666665 34445445666666666666654 44444432211 25555555
Q ss_pred eeCCCCCccccc--cCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhc
Q 045021 109 IWSCHSLPYIAR--VQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESL 186 (461)
Q Consensus 109 l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 186 (461)
++++ .++.++. ...++ +|+.|++++ +.++. ++...+...
T Consensus 116 L~~n-~l~~~~~~~~~~l~--------------------------------~L~~L~L~~-n~l~~-~~~~~~~~l---- 156 (272)
T 3rfs_A 116 LVEN-QLQSLPDGVFDKLT--------------------------------NLTYLNLAH-NQLQS-LPKGVFDKL---- 156 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCT--------------------------------TCCEEECCS-SCCCC-CCTTTTTTC----
T ss_pred CCCC-cCCccCHHHhccCC--------------------------------CCCEEECCC-CccCc-cCHHHhccC----
Confidence 5553 2333222 12333 455555555 34443 222222111
Q ss_pred ccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCC
Q 045021 187 EVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAK 266 (461)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 266 (461)
++|+.|++.++......+..+..+++|++|++++|......+..+..+++|+.|++++|+.. +.+++
T Consensus 157 ------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~ 223 (272)
T 3rfs_A 157 ------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPG 223 (272)
T ss_dssp ------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTT
T ss_pred ------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcH
Confidence 45666666664222222234566778888888776433333445677888888888887432 23557
Q ss_pred cceEeeccCccccccccccCCCCC
Q 045021 267 LSKLGIYRCERLEALPKGLHNLKS 290 (461)
Q Consensus 267 L~~L~l~~c~~~~~~~~~~~~l~~ 290 (461)
++.+++..+.....+|..++.++.
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 788877776555566666665543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=2.6e-14 Score=130.75 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=124.5
Q ss_pred hhhhhhhcCCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCccccc
Q 045021 21 QQQLCELSCRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMC 98 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~ 98 (461)
+..+ ++|++|+++++. +..++ .+..+++|++|++++| .+..++. ++.+++|++|++++|. +..++...+.
T Consensus 59 l~~l----~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 130 (272)
T 3rfs_A 59 IQYL----PNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFD 130 (272)
T ss_dssp GGGC----TTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred cccC----CCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhc
Confidence 5666 999999999954 56665 5889999999999997 5677766 7889999999999976 7777765432
Q ss_pred CCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeeccc
Q 045021 99 GTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFS 175 (461)
Q Consensus 99 ~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 175 (461)
. +++|+.|+++++ .++.++.. ..+++|++|+++++. +..++ .. +.. +++|+.|++++ +.++. ++
T Consensus 131 ~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~------l~~L~~L~L~~-N~l~~-~~ 197 (272)
T 3rfs_A 131 K-LTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP--EGVFDK------LTQLKDLRLYQ-NQLKS-VP 197 (272)
T ss_dssp T-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCSC-CC
T ss_pred c-CCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccC--HHHhcC------CccCCEEECCC-CcCCc-cC
Confidence 2 389999999996 66666553 567889999998875 44444 32 232 45788888877 56655 33
Q ss_pred CCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCC
Q 045021 176 KNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNL 240 (461)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 240 (461)
...+... ++|+.|++.++.. .+.+++|+.+++..+...+.+|.+++.+
T Consensus 198 ~~~~~~l----------~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 198 DGVFDRL----------TSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTTC----------TTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHhCC----------cCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 3333222 5677777766422 1335566666666554444555555443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=7.7e-15 Score=137.05 Aligned_cols=204 Identities=17% Similarity=0.127 Sum_probs=110.4
Q ss_pred ccCccEEEEecCCCCeecccCCCC-cchhhhcccCCCCCCccEEEEecCCchhhhH----HhhcCCCccceeeccccccc
Q 045021 156 SYLLEKLEIWDCPSLTCIFSKNEL-PATLESLEVGNQPPSLKSLNVWSCSKLESIA----ERLDNNTSLEMISILWCENL 230 (461)
Q Consensus 156 ~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~~ 230 (461)
.++|++|++++ +.+....+...+ ... ++|++|+++++......+ ..+..+++|++|++++|...
T Consensus 90 ~~~L~~L~l~~-n~l~~~~~~~~~~~~~----------~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 90 YSRLKELTLED-LKITGTMPPLPLEATG----------LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HSCCCEEEEES-CCCBSCCCCCSSSCCC----------BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred cCceeEEEeeC-CEeccchhhhhhhccC----------CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 45677777777 455431222211 111 457777776653322111 13345666666666665433
Q ss_pred eecccccCCCCCccEEEecCCCCCcc--CC--CCCCCCCCcceEeeccCcccccccc----ccCCCCCccEEEecccCCC
Q 045021 231 KFLPSGLHNLRQLQEIQLWGCENLVS--FP--EGGLPCAKLSKLGIYRCERLEALPK----GLHNLKSLKKLRIGGKLPS 302 (461)
Q Consensus 231 ~~~~~~~~~l~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~~~~~~~----~~~~l~~L~~L~l~~~~~~ 302 (461)
...+..+..+++|++|++++|..... ++ .....+++|++|++++|. ++.++. .+..+++|
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L----------- 226 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQP----------- 226 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCC-----------
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCC-----------
Confidence 33345556666666666666532211 11 111234456666666542 332222 12344444
Q ss_pred cCCCCCCCCcceEEeecCchhhHHhhh--hcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCC
Q 045021 303 LEEDGLPTNLHFLKIERNMEIWKSMIE--RGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPN 380 (461)
Q Consensus 303 l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~ 380 (461)
++|++++|. +....+. ..+..+++|++|++++| ++..+|.. .+++|++|++++ +.
T Consensus 227 ----------~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~---------~~~~L~~L~Ls~-N~ 283 (310)
T 4glp_A 227 ----------HSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA--GLEQVPKG---------LPAKLRVLDLSS-NR 283 (310)
T ss_dssp ----------SSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS--CCCSCCSC---------CCSCCSCEECCS-CC
T ss_pred ----------CEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC--CCCchhhh---------hcCCCCEEECCC-Cc
Confidence 455555544 2111110 11223468888888887 77777775 347899999988 57
Q ss_pred CcccccchhhccCCcEEEecCCCCCcc
Q 045021 381 LERLSSSIVDLQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 381 l~~i~~~~~~~~~L~~L~l~~C~~l~~ 407 (461)
++.+|. +..+++|+.|++++ +.++.
T Consensus 284 l~~~~~-~~~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 284 LNRAPQ-PDELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp CCSCCC-TTSCCCCSCEECSS-TTTSC
T ss_pred CCCCch-hhhCCCccEEECcC-CCCCC
Confidence 777753 67788999999988 66653
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=5.8e-13 Score=120.25 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=89.6
Q ss_pred ccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCCccEEEe
Q 045021 218 SLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI 296 (461)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l 296 (461)
+.++++++++ .+..+|..+. ++++.|++++|. +..++. ....+++|++|++++|..-...+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4455666553 4555555443 567777777663 333333 3444567777777765332323334566677777777
Q ss_pred cc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021 297 GG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL 373 (461)
Q Consensus 297 ~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L 373 (461)
++ .+..++.. ..+++|++|++++|. ++ ..+...+..+++|++|++++| .+..++...+ ..+++|+.|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L 160 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LK-SLPSGVFDRLTKLKELRLNTN--QLQSIPAGAF------DKLTNLQTL 160 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc-CC-CcChhHhccCCcccEEECcCC--cCCccCHHHc------CcCcCCCEE
Confidence 66 55555432 344566666666654 22 122223455566666666655 5555544323 234556666
Q ss_pred ecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 374 TIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 374 ~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
++++ +.+..++ ..+..+++|+.|++.+
T Consensus 161 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 161 SLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 6665 3444444 2445555666666655
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.4e-12 Score=117.66 Aligned_cols=168 Identities=21% Similarity=0.252 Sum_probs=85.8
Q ss_pred ccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeec
Q 045021 195 LKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIY 273 (461)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 273 (461)
.+.++..+ ..+..+|..+. +++++|+++++......+..+..+++|++|++++| .+..++. ....+++|++|+++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 45555554 34444443222 45666666655332333345556666666666665 3333332 23445566666666
Q ss_pred cCcccccc-ccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCc
Q 045021 274 RCERLEAL-PKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDD 349 (461)
Q Consensus 274 ~c~~~~~~-~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 349 (461)
+|. ++.+ +..+..+++|++|++++ .+..++.. ..+++|++|++++|. +. ..+...+..+++|++|++++| .
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~-~~~~~~~~~l~~L~~L~L~~N--~ 166 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQ-SIPAGAFDKLTNLQTLSLSTN--Q 166 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSS--C
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CC-ccCHHHcCcCcCCCEEECCCC--c
Confidence 643 3333 23455666666666666 55555443 334566666666664 22 122223455666666666665 5
Q ss_pred ccccCccccccCCCCCCCCCcceeecCC
Q 045021 350 MVSFPPEDRRLGTTLPLPASLASLTIGD 377 (461)
Q Consensus 350 ~~~i~~~~~~~~~~~~~~~~L~~L~l~~ 377 (461)
+..++...+ ..+++|+.|++++
T Consensus 167 l~~~~~~~~------~~l~~L~~L~l~~ 188 (251)
T 3m19_A 167 LQSVPHGAF------DRLGKLQTITLFG 188 (251)
T ss_dssp CSCCCTTTT------TTCTTCCEEECCS
T ss_pred CCccCHHHH------hCCCCCCEEEeeC
Confidence 555544323 2445666666666
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=3.2e-13 Score=124.69 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=114.7
Q ss_pred CCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021 215 NNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294 (461)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L 294 (461)
.+++|++|++++| .+..++ .+..+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 3456667777665 344443 3566677777777776 3444443 444567777777764 3444443 7777788888
Q ss_pred Eecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCccee
Q 045021 295 RIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASL 373 (461)
Q Consensus 295 ~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L 373 (461)
++++ .+..++....+++|++|++++|. ++.. ..+..+++|++|++++| .+..++. + ..+++|+.|
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L 183 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN--QISDIVP--L------AGLTKLQNL 183 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS--CCCCCGG--G------TTCTTCCEE
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCC--ccccchh--h------cCCCccCEE
Confidence 8877 66666555666778888888776 3322 24677888888888887 6666554 3 366788888
Q ss_pred ecCCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 374 TIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 374 ~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
+++++ .++.++ .+..+++|+.|++++ +.++..+.
T Consensus 184 ~L~~N-~i~~l~-~l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 184 YLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp ECCSS-CCCBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred ECCCC-cCCCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence 88884 777775 477888888888888 55655444
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=5.8e-13 Score=122.92 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=138.6
Q ss_pred cCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE
Q 045021 237 LHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL 315 (461)
Q Consensus 237 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 315 (461)
...+++|+.|++++| .+..++. ...+++|++|++++| .++.++. +..+++|++|++++ .+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 345789999999997 5666654 455779999999996 5666665 89999999999999 88888877888999999
Q ss_pred EeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCc
Q 045021 316 KIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLK 395 (461)
Q Consensus 316 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~ 395 (461)
++++|. +... ..+..+++|++|++++| .+..++. + ..+++|+.|+++++ .+..++. +..+++|+
T Consensus 118 ~L~~n~-i~~~---~~l~~l~~L~~L~l~~n--~l~~~~~--l------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 118 SLEHNG-ISDI---NGLVHLPQLESLYLGNN--KITDITV--L------SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 181 (291)
T ss_dssp ECTTSC-CCCC---GGGGGCTTCCEEECCSS--CCCCCGG--G------GGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred ECCCCc-CCCC---hhhcCCCCCCEEEccCC--cCCcchh--h------ccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence 999997 3322 25778999999999998 7777743 4 36789999999995 7877765 88999999
Q ss_pred EEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 396 YLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 396 ~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
+|++++ +.++.++.-...++|+.|++++|+.
T Consensus 182 ~L~L~~-N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 182 NLYLSK-NHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCS-SCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred EEECCC-CcCCCChhhccCCCCCEEECcCCcc
Confidence 999999 7888887644478999999998853
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.4e-14 Score=138.06 Aligned_cols=235 Identities=12% Similarity=0.071 Sum_probs=143.8
Q ss_pred ccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC--ch--------hhhHHhhcCCCccceeecc
Q 045021 156 SYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS--KL--------ESIAERLDNNTSLEMISIL 225 (461)
Q Consensus 156 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l--------~~~~~~~~~l~~L~~L~l~ 225 (461)
.++|+.|++++ +.+.. .....++. ....+++|++|+++++. .+ ..+...+..+++|++|+++
T Consensus 31 ~~~L~~L~L~~-n~i~~-~~~~~l~~------~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 31 DDSVKEIVLSG-NTIGT-EAARWLSE------NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp CSCCCEEECTT-SEECH-HHHHHHHH------TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred CCCccEEECCC-CCCCH-HHHHHHHH------HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 66899999988 45543 11100100 11223679999988862 11 1222345788899999998
Q ss_pred ccccce----ecccccCCCCCccEEEecCCCCCcc-----CCCCCCCC---------CCcceEeeccCccc-cccc---c
Q 045021 226 WCENLK----FLPSGLHNLRQLQEIQLWGCENLVS-----FPEGGLPC---------AKLSKLGIYRCERL-EALP---K 283 (461)
Q Consensus 226 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~---------~~L~~L~l~~c~~~-~~~~---~ 283 (461)
+|..-. .++..+..+++|++|++++|.. .. ++.....+ ++|++|++++|.-- ..++ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 874332 3566677788999999988743 21 11111111 58899999887532 2333 3
Q ss_pred ccCCCCCccEEEecc-cCC------CcC-CCCCCCCcceEEeecCchhhH---HhhhhcccCCCCcCEEEEecCCCcccc
Q 045021 284 GLHNLKSLKKLRIGG-KLP------SLE-EDGLPTNLHFLKIERNMEIWK---SMIERGFHKFSSLRHLTIEGCDDDMVS 352 (461)
Q Consensus 284 ~~~~l~~L~~L~l~~-~~~------~l~-~~~~~~~L~~L~l~~~~~l~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~ 352 (461)
.+..+++|++|++++ .+. .++ ....+++|++|++++|. +++ ......+..+++|++|++++| .+..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~ 258 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC--LLSA 258 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC--CCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC--CCch
Confidence 566788888998888 554 122 23456788888888887 321 111224677888888888887 4443
Q ss_pred c-----CccccccCCCCCCCCCcceeecCCCCCCcc-----cccch-hhccCCcEEEecCCCCCcccC
Q 045021 353 F-----PPEDRRLGTTLPLPASLASLTIGDFPNLER-----LSSSI-VDLQNLKYLKLYDCPKLKYFS 409 (461)
Q Consensus 353 i-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~-~~~~~L~~L~l~~C~~l~~~~ 409 (461)
. +.. +. ....++|++|++++| .+.. ++..+ ..+++|++|++++ +.++...
T Consensus 259 ~~~~~l~~~-l~----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~~~ 319 (386)
T 2ca6_A 259 RGAAAVVDA-FS----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG-NRFSEED 319 (386)
T ss_dssp HHHHHHHHH-HH----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCTTS
T ss_pred hhHHHHHHH-Hh----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC-CcCCcch
Confidence 2 221 10 012578888888885 5655 66555 5578888888888 5555443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=2.5e-14 Score=137.97 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=144.7
Q ss_pred CCccEEEEecCCchhh----hHHhhcCCCccceeecccccc--c-eecc-------cccCCCCCccEEEecCCCCCc---
Q 045021 193 PSLKSLNVWSCSKLES----IAERLDNNTSLEMISILWCEN--L-KFLP-------SGLHNLRQLQEIQLWGCENLV--- 255 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~--~-~~~~-------~~~~~l~~L~~L~l~~~~~l~--- 255 (461)
++|++|+++++..... ++..+..+++|++|++++|.. + ..+| ..+..+++|++|++++|..-.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 6799999988643333 333577889999999987621 1 1223 234678899999999874322
Q ss_pred -cCCCCCCCCCCcceEeeccCcccc----ccccccCCC---------CCccEEEecc-cCC--CcCC----CCCCCCcce
Q 045021 256 -SFPEGGLPCAKLSKLGIYRCERLE----ALPKGLHNL---------KSLKKLRIGG-KLP--SLEE----DGLPTNLHF 314 (461)
Q Consensus 256 -~l~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~l---------~~L~~L~l~~-~~~--~l~~----~~~~~~L~~ 314 (461)
.++.....+++|++|++++|..-. .++..+..+ ++|++|++++ .+. .++. ...+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 133333446789999999875422 222233334 8899999988 543 3331 134568999
Q ss_pred EEeecCchhhHH----hhhhcccCCCCcCEEEEecCCCcc-----cccCccccccCCCCCCCCCcceeecCCCCCCccc-
Q 045021 315 LKIERNMEIWKS----MIERGFHKFSSLRHLTIEGCDDDM-----VSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL- 384 (461)
Q Consensus 315 L~l~~~~~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~-----~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i- 384 (461)
|++++|. +.+. .....+..+++|++|++++| .+ ..++.. + ...++|++|++++| .+...
T Consensus 192 L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~-l------~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 192 VKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIA-L------KSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp EECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHH-G------GGCTTCCEEECTTC-CCCHHH
T ss_pred EECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHH-H------ccCCCcCEEECCCC-CCchhh
Confidence 9999886 3321 12225678889999999987 55 444543 3 25678999999986 45443
Q ss_pred ----ccchhh--ccCCcEEEecCCCCCcc-----cCCCC--CcccccEeeccCCch
Q 045021 385 ----SSSIVD--LQNLKYLKLYDCPKLKY-----FSEKG--LPSSLLRLYIDECPL 427 (461)
Q Consensus 385 ----~~~~~~--~~~L~~L~l~~C~~l~~-----~~~~~--~~~~L~~L~i~~c~~ 427 (461)
+..+.. +++|++|++++ +.++. ++..- .+++|++|++++|+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHhhccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 344533 88899999998 56766 54421 148899999988863
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.2e-12 Score=128.09 Aligned_cols=174 Identities=25% Similarity=0.349 Sum_probs=105.4
Q ss_pred CccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021 30 RLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI 109 (461)
Q Consensus 30 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 109 (461)
+|++|+++++ .+..+|..+ +++|++|++++| .+..+| ..+++|++|+++++. ++.+|. +. .+|+.|++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~----~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LP----ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CC----TTCCEEEC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hh----cCCCEEEC
Confidence 7888888874 456677655 377888888886 566677 567888888888864 666766 32 27888888
Q ss_pred eCCCCCccccccCCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccC
Q 045021 110 WSCHSLPYIARVQLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVG 189 (461)
Q Consensus 110 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 189 (461)
+++ .++.++. .+++|+.|+++++. ++.+| . . .++|+.|++++ +.++. +|. +.
T Consensus 128 s~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp--~---~------l~~L~~L~Ls~-N~L~~-lp~--l~--------- 179 (571)
T 3cvr_A 128 DNN-QLTMLPE--LPALLEYINADNNQ-LTMLP--E---L------PTSLEVLSVRN-NQLTF-LPE--LP--------- 179 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC--C---C------CTTCCEEECCS-SCCSC-CCC--CC---------
T ss_pred CCC-cCCCCCC--cCccccEEeCCCCc-cCcCC--C---c------CCCcCEEECCC-CCCCC-cch--hh---------
Confidence 773 5666655 56777777777754 44455 3 1 33677777776 55555 333 21
Q ss_pred CCCCCccEEEEecCCchhhhHHhhcCCCcc-------ceeeccccccceecccccCCCCCccEEEecCC
Q 045021 190 NQPPSLKSLNVWSCSKLESIAERLDNNTSL-------EMISILWCENLKFLPSGLHNLRQLQEIQLWGC 251 (461)
Q Consensus 190 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (461)
++|+.|+++++ .+..+|. +.. +| +.|++++| .+..+|..+..+++|+.|++++|
T Consensus 180 ---~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 180 ---ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp ---TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred ---CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 24666666663 3444443 222 44 55555554 34445554545555555555555
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.6e-12 Score=130.19 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=91.3
Q ss_pred CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEE
Q 045021 216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR 295 (461)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~ 295 (461)
+++|+.|+++++ .+..++ .+..+++|+.|++++| .+..++. ...+++|+.|++++| .+..++ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 445555555544 233333 3455556666666555 3333332 333445666666554 333333 355666666666
Q ss_pred ecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceee
Q 045021 296 IGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLT 374 (461)
Q Consensus 296 l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~ 374 (461)
+++ .+..++....+++|+.|++++|. +... ..+..+++|+.|++++| .+..++. + ..+++|+.|+
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N--~l~~~~~--l------~~l~~L~~L~ 181 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN--QISDIVP--L------AGLTKLQNLY 181 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSS--CCCCCGG--G------TTCTTCCEEE
T ss_pred ecCCCCCCCccccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCC--cCCCchh--h------ccCCCCCEEE
Confidence 666 55555444555566666666665 2211 24556666777777665 4444433 2 2455677777
Q ss_pred cCCCCCCcccccchhhccCCcEEEecCCCCCcccC
Q 045021 375 IGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFS 409 (461)
Q Consensus 375 l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~ 409 (461)
+++| .+..++ .+..+++|+.|++++ +.+...|
T Consensus 182 Ls~N-~i~~l~-~l~~l~~L~~L~L~~-N~l~~~p 213 (605)
T 1m9s_A 182 LSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKP 213 (605)
T ss_dssp CCSS-CCCBCG-GGTTCTTCSEEECCS-EEEECCC
T ss_pred CcCC-CCCCCh-HHccCCCCCEEEccC-CcCcCCc
Confidence 7663 555553 456666777777766 4444433
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=6.7e-12 Score=125.81 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=98.1
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeec
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIY 273 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 273 (461)
+++.|++.++ .+..+|..+ +++|++|++++| .+..+| ..+++|+.|++++| .+..++. ... +|++|+++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 4666666664 344444333 256666666665 344455 33566666666665 4444555 222 66666666
Q ss_pred cCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccc
Q 045021 274 RCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVS 352 (461)
Q Consensus 274 ~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 352 (461)
+| .++.+|. .+++|++|++++ .+..++. .+++|++|++++|. ++. .+. +. ++|++|++++| .+..
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-L~~-lp~--l~--~~L~~L~Ls~N--~L~~ 194 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQ-LTF-LPE--LP--ESLEALDVSTN--LLES 194 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSC-CCC--CC--TTCCEEECCSS--CCSS
T ss_pred CC-cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCC-CCC-cch--hh--CCCCEEECcCC--CCCc
Confidence 64 3444554 456666666666 5555554 45566666666665 222 211 22 56666666665 5555
Q ss_pred cCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEEecCCCCCcc
Q 045021 353 FPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 353 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~ 407 (461)
+|. +.. .-...++.|+.|++++ +.++.+|..+..+++|+.|++++ +.++.
T Consensus 195 lp~--~~~-~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~-N~l~~ 244 (571)
T 3cvr_A 195 LPA--VPV-RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED-NPLSS 244 (571)
T ss_dssp CCC--CC---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCS-SSCCH
T ss_pred hhh--HHH-hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeC-CcCCC
Confidence 554 210 0000111226666666 35666665555666666666666 44443
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=2.8e-12 Score=111.17 Aligned_cols=128 Identities=12% Similarity=0.135 Sum_probs=60.4
Q ss_pred hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021 213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK 292 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~ 292 (461)
+..+++|++|++++| .+..+ ..+..+++|++|++++|..-...+.....+++|++|++++|......+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 333444444444444 22222 2344445555555555422222233333344555555555433333344455555555
Q ss_pred EEEecc-c-CCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 293 KLRIGG-K-LPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 293 ~L~l~~-~-~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
+|++++ . +..++....+++|++|++++|. +.+.. .+..+++|++|++++|
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 555555 3 4444444445566666666654 22111 3555666777777665
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=1.4e-13 Score=131.41 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=134.5
Q ss_pred CCCCccEEEEecCCchhhh-H----HhhcCCC-ccceeeccccccceecccccCCC-----CCccEEEecCCCCCccCCC
Q 045021 191 QPPSLKSLNVWSCSKLESI-A----ERLDNNT-SLEMISILWCENLKFLPSGLHNL-----RQLQEIQLWGCENLVSFPE 259 (461)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~-~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~l~~ 259 (461)
.+++|++|+++++. ++.. + ..+..++ +|++|++++|..-...+..+..+ ++|++|++++|. +.....
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 33569999998864 4332 2 5677787 89999999874333323334333 889999999884 443221
Q ss_pred -----CCCCC-CCcceEeeccCccccccc-c----ccCC-CCCccEEEecc-cCCC-----cCCC--CCCCCcceEEeec
Q 045021 260 -----GGLPC-AKLSKLGIYRCERLEALP-K----GLHN-LKSLKKLRIGG-KLPS-----LEED--GLPTNLHFLKIER 319 (461)
Q Consensus 260 -----~~~~~-~~L~~L~l~~c~~~~~~~-~----~~~~-l~~L~~L~l~~-~~~~-----l~~~--~~~~~L~~L~l~~ 319 (461)
....+ ++|++|++++|. ++..+ . .+.. .++|++|++++ .+.. ++.. ..+++|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 11122 589999998875 33322 1 2444 36899999888 4442 2111 2234889999988
Q ss_pred CchhhHHhh---hhcccCC-CCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCcceeecCCCCCCcccc-----
Q 045021 320 NMEIWKSMI---ERGFHKF-SSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASLTIGDFPNLERLS----- 385 (461)
Q Consensus 320 ~~~l~~~~~---~~~~~~l-~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~----- 385 (461)
|. +++... ...+..+ ++|++|++++| .+.. ++.. +. ..+++|++|+++++ .+...+
T Consensus 177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~-l~-----~~~~~L~~L~Ls~N-~l~~~~~~~l~ 246 (362)
T 3goz_A 177 NN-LASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYI-FS-----SIPNHVVSLNLCLN-CLHGPSLENLK 246 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHH-HH-----HSCTTCCEEECCSS-CCCCCCHHHHH
T ss_pred CC-CchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHH-Hh-----cCCCCceEEECcCC-CCCcHHHHHHH
Confidence 86 332221 1234455 48899999887 5554 3332 21 12458889999884 565543
Q ss_pred cchhhccCCcEEEecCCCCCcccCC--------C-CCcccccEeeccCCc
Q 045021 386 SSIVDLQNLKYLKLYDCPKLKYFSE--------K-GLPSSLLRLYIDECP 426 (461)
Q Consensus 386 ~~~~~~~~L~~L~l~~C~~l~~~~~--------~-~~~~~L~~L~i~~c~ 426 (461)
..+..+++|++|++++| .+..++. . ...++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 33466788899998884 3222211 1 124678888888875
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=3.4e-12 Score=129.27 Aligned_cols=170 Identities=18% Similarity=0.166 Sum_probs=138.4
Q ss_pred cCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceE
Q 045021 237 LHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFL 315 (461)
Q Consensus 237 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 315 (461)
+..+++|+.|++++| .+..++. ...+++|+.|++++| .+..++. +..+++|+.|++++ .+..++....+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCC-CCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 456789999999987 5666653 455789999999996 4566655 88999999999999 88888877888999999
Q ss_pred EeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCc
Q 045021 316 KIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLK 395 (461)
Q Consensus 316 ~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~ 395 (461)
++++|. +... ..+..+++|+.|++++| .+..++. + ..+++|+.|++++| .+..++. +..+++|+
T Consensus 115 ~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N--~l~~l~~--l------~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 115 SLEHNG-ISDI---NGLVHLPQLESLYLGNN--KITDITV--L------SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 178 (605)
T ss_dssp ECTTSC-CCCC---GGGGGCTTCSEEECCSS--CCCCCGG--G------GSCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred EecCCC-CCCC---ccccCCCccCEEECCCC--ccCCchh--h------cccCCCCEEECcCC-cCCCchh-hccCCCCC
Confidence 999998 3322 24788999999999998 7777743 4 36789999999995 6777755 88999999
Q ss_pred EEEecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 396 YLKLYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 396 ~L~l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
.|++++ +.++.++.-..+++|+.|++++|+.
T Consensus 179 ~L~Ls~-N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 179 NLYLSK-NHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EEECCS-SCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred EEECcC-CCCCCChHHccCCCCCEEEccCCcC
Confidence 999999 6888886644479999999999864
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3.3e-12 Score=110.66 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEE
Q 045021 216 NTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLR 295 (461)
Q Consensus 216 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~ 295 (461)
+++|++|+++++ .+..++ .+..+++|++|++++| .+..++ ....+++|++|++++|.-....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 445566666554 333444 4555666666666665 333332 223345666666666443333444566666666666
Q ss_pred ecc-cCCC--cCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcce
Q 045021 296 IGG-KLPS--LEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLAS 372 (461)
Q Consensus 296 l~~-~~~~--l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~ 372 (461)
+++ .+.. ......+++|++|++++|..+++.. .+..+++|++|++++| .+..++. + ..+++|+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n--~i~~~~~--l------~~l~~L~~ 185 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD--GVHDYRG--I------EDFPKLNQ 185 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB--CCCCCTT--G------GGCSSCCE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC--CCcChHH--h------ccCCCCCE
Confidence 666 4433 2222445566666666665333221 3555666666666665 4554442 2 24456666
Q ss_pred eecCC
Q 045021 373 LTIGD 377 (461)
Q Consensus 373 L~l~~ 377 (461)
|++++
T Consensus 186 L~l~~ 190 (197)
T 4ezg_A 186 LYAFS 190 (197)
T ss_dssp EEECB
T ss_pred EEeeC
Confidence 66666
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=1.2e-12 Score=118.96 Aligned_cols=170 Identities=16% Similarity=0.176 Sum_probs=120.2
Q ss_pred CccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEe
Q 045021 217 TSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRI 296 (461)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l 296 (461)
.++..++++.+ .+..++ .+..+++|+.|++++| .+..++ ....+++|++|++++| .++.++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34555555553 333333 3556778888888876 556665 3444668888888875 4566655 788888888888
Q ss_pred cc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeec
Q 045021 297 GG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTI 375 (461)
Q Consensus 297 ~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l 375 (461)
++ .+..++.... ++|++|++++|. +... ..+..+++|++|++++| .+..++. + ..+++|+.|++
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~-l~~~---~~l~~l~~L~~L~Ls~N--~i~~~~~--l------~~l~~L~~L~L 157 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNE-LRDT---DSLIHLKNLEILSIRNN--KLKSIVM--L------GFLSKLEVLDL 157 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSC-CSBS---GGGTTCTTCCEEECTTS--CCCBCGG--G------GGCTTCCEEEC
T ss_pred CCCccCCcCcccc-CcccEEEccCCc-cCCC---hhhcCcccccEEECCCC--cCCCChH--H------ccCCCCCEEEC
Confidence 88 7777665544 789999998886 3322 24778889999999987 6777653 3 36778999999
Q ss_pred CCCCCCcccccchhhccCCcEEEecCCCCCcccCC
Q 045021 376 GDFPNLERLSSSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 376 ~~~~~l~~i~~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
++ +.+..+ ..+..+++|+.|++++ +.+...|.
T Consensus 158 ~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~~ 189 (263)
T 1xeu_A 158 HG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEPV 189 (263)
T ss_dssp TT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCCE
T ss_pred CC-CcCcch-HHhccCCCCCEEeCCC-CcccCCcc
Confidence 98 477777 6778889999999988 56665544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=3.7e-11 Score=106.62 Aligned_cols=144 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred ccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeec
Q 045021 243 LQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIER 319 (461)
Q Consensus 243 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~ 319 (461)
.+.++.+++ .+..+|.... ++|++|++++|......+..+..+++|++|++++ .+..++.. ..+++|++|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445555543 4555555333 3677777776543333344566667677666666 55544432 2334444444444
Q ss_pred CchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEE
Q 045021 320 NMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLK 398 (461)
Q Consensus 320 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~ 398 (461)
|. ++ ..+...+..+++|++|++++| .+..++.. + ..+++|+.|++++ +.+..++ ..+..+++|+.|+
T Consensus 98 N~-l~-~l~~~~~~~l~~L~~L~Ls~N--~l~~lp~~-~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQ-LT-VLPSAVFDRLVHLKELFMCCN--KLTELPRG-I------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp SC-CC-CCCTTTTTTCTTCCEEECCSS--CCCSCCTT-G------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred Cc-CC-ccChhHhCcchhhCeEeccCC--cccccCcc-c------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEE
Confidence 43 21 111112344455555555554 44444433 2 1334555555554 2444443 2244444555555
Q ss_pred ecC
Q 045021 399 LYD 401 (461)
Q Consensus 399 l~~ 401 (461)
+.+
T Consensus 166 l~~ 168 (229)
T 3e6j_A 166 LFG 168 (229)
T ss_dssp CTT
T ss_pred eeC
Confidence 544
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=5.9e-11 Score=103.67 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCcc
Q 045021 53 SSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLK 128 (461)
Q Consensus 53 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 128 (461)
++|++|+++++ .+..++. ++.+++|++|+++++. ++.++...+.. +++|++|+++++ .++.++.. ..+++|+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNK-LTSLTYLNLSTN-QLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCC-CCCcCEEECCCC-cCCccCHhHhcCccCCC
Confidence 34555555554 2333333 3445555555555533 44444332211 245555555442 23333321 3344555
Q ss_pred EEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchh
Q 045021 129 RLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLE 207 (461)
Q Consensus 129 ~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 207 (461)
+|+++++. +..++ .. +.. +++|+.|++++ +.++. ++...+... ++|+.|++.++..
T Consensus 104 ~L~L~~N~-l~~~~--~~~~~~------l~~L~~L~l~~-N~l~~-~~~~~~~~l----------~~L~~L~l~~N~~-- 160 (208)
T 2o6s_A 104 ELALNTNQ-LQSLP--DGVFDK------LTQLKDLRLYQ-NQLKS-VPDGVFDRL----------TSLQYIWLHDNPW-- 160 (208)
T ss_dssp EEECCSSC-CCCCC--TTTTTT------CTTCCEEECCS-SCCSC-CCTTTTTTC----------TTCCEEECCSCCB--
T ss_pred EEEcCCCc-CcccC--HhHhcc------CCcCCEEECCC-Cccce-eCHHHhccC----------CCccEEEecCCCe--
Confidence 55555432 23333 22 222 34566666665 45444 333222221 4566666666421
Q ss_pred hhHHhhcCCCccceeeccccccceecccccCCC
Q 045021 208 SIAERLDNNTSLEMISILWCENLKFLPSGLHNL 240 (461)
Q Consensus 208 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 240 (461)
.+.+++|+.|++..+...+.+|.+++.+
T Consensus 161 -----~~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 161 -----DCTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -----CCCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -----ecCCCCHHHHHHHHHhCCceeeccCccc
Confidence 2345566666666554445555555444
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=4.8e-13 Score=127.66 Aligned_cols=236 Identities=14% Similarity=0.043 Sum_probs=144.0
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcC----C-Cccceeecccccccee
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDN----N-TSLEMISILWCENLKF 232 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----l-~~L~~L~l~~~~~~~~ 232 (461)
+|+.|++++ +.++. .+...+...+ ...+.+|++|+++++......+..+.. . ++|++|++++|..-..
T Consensus 23 ~L~~L~Ls~-n~l~~-~~~~~l~~~l-----~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 23 GVTSLDLSL-NNLYS-ISTVELIQAF-----ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TCCEEECTT-SCGGG-SCHHHHHHHH-----HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CceEEEccC-CCCCh-HHHHHHHHHH-----HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 499999999 56665 3221111111 112227999999997433332333333 3 8999999998853322
Q ss_pred ccc----ccCCC-CCccEEEecCCCCCccCCCC-----CCC-CCCcceEeeccCcccc----ccccccCCCC-CccEEEe
Q 045021 233 LPS----GLHNL-RQLQEIQLWGCENLVSFPEG-----GLP-CAKLSKLGIYRCERLE----ALPKGLHNLK-SLKKLRI 296 (461)
Q Consensus 233 ~~~----~~~~l-~~L~~L~l~~~~~l~~l~~~-----~~~-~~~L~~L~l~~c~~~~----~~~~~~~~l~-~L~~L~l 296 (461)
.+. .+..+ ++|++|++++|. +...... ... .++|++|++++|.--. .++..+..++ +|++|++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 222 24445 799999999984 4443321 111 3489999999975332 3344455665 9999999
Q ss_pred cc-cCCCcCC-----C-CCC-CCcceEEeecCchhhHH----hhhhcccC-CCCcCEEEEecCCCcccccCccccccCCC
Q 045021 297 GG-KLPSLEE-----D-GLP-TNLHFLKIERNMEIWKS----MIERGFHK-FSSLRHLTIEGCDDDMVSFPPEDRRLGTT 363 (461)
Q Consensus 297 ~~-~~~~l~~-----~-~~~-~~L~~L~l~~~~~l~~~----~~~~~~~~-l~~L~~L~l~~~~~~~~~i~~~~~~~~~~ 363 (461)
++ .+..... . ... ++|++|++++|. +.+. ... .+.. .++|++|++++| .+...+...+. ..
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~--~~ 248 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY-IFSSIPNHVVSLNLCLN--CLHGPSLENLK--LL 248 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH-HHHHSCTTCCEEECCSS--CCCCCCHHHHH--HT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH-HHhcCCCCceEEECcCC--CCCcHHHHHHH--HH
Confidence 99 5544331 1 122 599999999997 4331 111 2333 469999999998 55554331110 01
Q ss_pred CCCCCCcceeecCCCC--C-----CcccccchhhccCCcEEEecCCCCCccc
Q 045021 364 LPLPASLASLTIGDFP--N-----LERLSSSIVDLQNLKYLKLYDCPKLKYF 408 (461)
Q Consensus 364 ~~~~~~L~~L~l~~~~--~-----l~~i~~~~~~~~~L~~L~l~~C~~l~~~ 408 (461)
....++|+.|++++|. . +..++..+..+++|+.|++++ +.+...
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~~ 299 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHPS 299 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCGG
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCCc
Confidence 1356789999999963 1 222335566788899999998 666654
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=6.5e-11 Score=112.78 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=58.0
Q ss_pred eeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCC--CCCCcceEeeccCccccccc-cccCCCCCccEEEec
Q 045021 221 MISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGL--PCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIG 297 (461)
Q Consensus 221 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~ 297 (461)
.++.+++ .+..+|..+. +.++.|++++| .+..++.... .+++|++|++++| .++.++ ..+..+++|++|+++
T Consensus 22 ~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSS-CCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCC-CcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 4444432 3444554332 34666666665 3444443222 4556666666654 233332 345556666666665
Q ss_pred c-cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc
Q 045021 298 G-KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP 355 (461)
Q Consensus 298 ~-~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~ 355 (461)
+ .+..++.. ..+++|++|++++|. +. ......+..+++|++|++++| .+..++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~-~~~~~~~~~l~~L~~L~L~~N--~l~~l~~ 153 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IV-VVDRNAFEDMAQLQKLYLSQN--QISRFPV 153 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CC-EECTTTTTTCTTCCEEECCSS--CCCSCCG
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-cc-EECHHHhCCcccCCEEECCCC--cCCeeCH
Confidence 5 44444332 233445555555444 11 111122444445555555544 4444443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=1.3e-10 Score=101.54 Aligned_cols=124 Identities=26% Similarity=0.330 Sum_probs=66.1
Q ss_pred CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceE
Q 045021 194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKL 270 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 270 (461)
++++|++.++ .+..++ ..+..+++|++|+++++ .+..++ ..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 4667777664 333332 24556677777777665 333333 33566677777777665 34444432 3445566666
Q ss_pred eeccCcccccccc-ccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 271 GIYRCERLEALPK-GLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 271 ~l~~c~~~~~~~~-~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
++++| .++.++. .+..+++|++|++++ .+..++.. ..+++|++|++++|+
T Consensus 106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 66664 3333333 345566666666665 44444432 233455555555543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=2.5e-11 Score=110.12 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=129.3
Q ss_pred CCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEee
Q 045021 240 LRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIE 318 (461)
Q Consensus 240 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 318 (461)
+.++..++++++ .+..++ ....+++|++|++++| .++.++ .+..+++|++|++++ .+..++....+++|++|+++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 456667777765 445554 2344679999999996 577776 688999999999999 88777767778899999999
Q ss_pred cCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccccchhhccCCcEEE
Q 045021 319 RNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSSSIVDLQNLKYLK 398 (461)
Q Consensus 319 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~ 398 (461)
+|. +.... .+.. ++|++|++++| ++..++. + ..+++|+.|++++ +.++.++ .+..+++|+.|+
T Consensus 94 ~N~-l~~l~---~~~~-~~L~~L~L~~N--~l~~~~~--l------~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 94 RNR-LKNLN---GIPS-ACLSRLFLDNN--ELRDTDS--L------IHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLD 156 (263)
T ss_dssp SSC-CSCCT---TCCC-SSCCEEECCSS--CCSBSGG--G------TTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEE
T ss_pred CCc-cCCcC---cccc-CcccEEEccCC--ccCCChh--h------cCcccccEEECCC-CcCCCCh-HHccCCCCCEEE
Confidence 997 33221 1233 89999999998 7777754 4 3678999999999 5788885 788999999999
Q ss_pred ecCCCCCcccCCCCCcccccEeeccCCch
Q 045021 399 LYDCPKLKYFSEKGLPSSLLRLYIDECPL 427 (461)
Q Consensus 399 l~~C~~l~~~~~~~~~~~L~~L~i~~c~~ 427 (461)
+++ +.++.++.-...++|+.|++++++.
T Consensus 157 L~~-N~i~~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 157 LHG-NEITNTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTT-SCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred CCC-CcCcchHHhccCCCCCEEeCCCCcc
Confidence 999 7888874434468999999999864
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=3.2e-10 Score=99.86 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=85.3
Q ss_pred CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceEe
Q 045021 194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKLG 271 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 271 (461)
+++.|++.++ .+..++ ..+..+++|++|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus 33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 5777777774 344333 36777888888888877444444677888888888888887 55666653 34567888888
Q ss_pred eccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 272 IYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 272 l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
+++|......+..+..+++|++|++++ .+..++.. ..+++|++|++++|+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888643333355677888888888887 66666543 345667777776665
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=7.4e-10 Score=104.01 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=56.9
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCC-CCCCCCCcc-eE
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLS-KL 270 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L 270 (461)
++..+.+.+.............+++|+++++.++ .+..++ .+|.++++|+.+++.++ +..++. ....+++|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 3555555553222222212223667777777654 344443 45666777777777664 455544 334455666 66
Q ss_pred eeccCccccccc-cccCCCCCccEEEecc-cCCCcCC
Q 045021 271 GIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEE 305 (461)
Q Consensus 271 ~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~ 305 (461)
.+.+ .++.++ .+|.+|++|+.+++.+ .+..++.
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 6655 344443 3566666666666644 4444443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=2.9e-10 Score=100.17 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=112.0
Q ss_pred cceEeeccCccccccccccCCCCCccEEEecc-cCCCcCC---CCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021 267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE---DGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT 342 (461)
Q Consensus 267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 342 (461)
-+++++++ ..++.+|..+ .+.+++|++++ .+..++. ...+++|++|++++|. ++. .....+..+++|++|+
T Consensus 13 ~~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~-i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITD-IEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEE
T ss_pred CCEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCE-ECHHHhCCCCCCCEEE
Confidence 46788877 4567777644 34678999999 7777643 2457899999999987 332 2333578899999999
Q ss_pred EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCcccCCCCC--cccccE
Q 045021 343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLR 419 (461)
Q Consensus 343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~ 419 (461)
+++| .+..++...+ ..+++|++|++++ +.+..+ +..+..+++|++|++++ ++++.++...+ .++|++
T Consensus 88 Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 88 LTSN--RLENVQHKMF------KGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp CCSS--CCCCCCGGGG------TTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCE
T ss_pred CCCC--ccCccCHhHh------cCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCE
Confidence 9998 7887777545 3678999999999 577766 47788999999999999 88888855433 689999
Q ss_pred eeccCCch
Q 045021 420 LYIDECPL 427 (461)
Q Consensus 420 L~i~~c~~ 427 (461)
|++++++.
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 99998863
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=4e-13 Score=135.21 Aligned_cols=196 Identities=13% Similarity=0.085 Sum_probs=115.0
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeecccccc-------------ceecccccCCCCCccEEE-ecCCCCCccCC
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCEN-------------LKFLPSGLHNLRQLQEIQ-LWGCENLVSFP 258 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~l~~L~~L~-l~~~~~l~~l~ 258 (461)
++|+.|++++ ..++.+|..++.+++|+.|+++++.. ....|..++.+++|+.|+ ++.+ .+
T Consensus 349 ~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~---- 422 (567)
T 1dce_A 349 EQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL---- 422 (567)
T ss_dssp TTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred ccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence 5678888887 46777888888888888888765531 222344455555666655 3322 11
Q ss_pred CCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCC
Q 045021 259 EGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSS 337 (461)
Q Consensus 259 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 337 (461)
..|+.+.+.++ .++.++. ..|+.|++++ .+..+|....+++|+.|++++|. ++ ..+ ..+..+++
T Consensus 423 ------~~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~-~lp-~~~~~l~~ 487 (567)
T 1dce_A 423 ------DDLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LR-ALP-PALAALRC 487 (567)
T ss_dssp ------HHHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CC-CCC-GGGGGCTT
T ss_pred ------chhhhhhhhcc-cccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccc-cc-ccc-hhhhcCCC
Confidence 12222222221 1222221 1355666666 55555544445566666666665 22 122 24667778
Q ss_pred cCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc--ccchhhccCCcEEEecCCCCCcccCCCCC--
Q 045021 338 LRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL--SSSIVDLQNLKYLKLYDCPKLKYFSEKGL-- 413 (461)
Q Consensus 338 L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~C~~l~~~~~~~~-- 413 (461)
|+.|++++| .+..+| . + ..+++|+.|++++ +.+..+ |..+..+++|+.|++++ +.++.+|....
T Consensus 488 L~~L~Ls~N--~l~~lp-~-l------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l 555 (567)
T 1dce_A 488 LEVLQASDN--ALENVD-G-V------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERL 555 (567)
T ss_dssp CCEEECCSS--CCCCCG-G-G------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHH
T ss_pred CCEEECCCC--CCCCCc-c-c------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHH
Confidence 888888876 666666 2 4 2567788888887 466666 67777788888888887 66776655221
Q ss_pred ---cccccEee
Q 045021 414 ---PSSLLRLY 421 (461)
Q Consensus 414 ---~~~L~~L~ 421 (461)
+++|+.|+
T Consensus 556 ~~~lp~L~~L~ 566 (567)
T 1dce_A 556 AEMLPSVSSIL 566 (567)
T ss_dssp HHHCTTCSEEE
T ss_pred HHHCcccCccC
Confidence 45666664
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=4.2e-10 Score=105.72 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCc-EEEecCCCCCcccCCC
Q 045021 334 KFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLK-YLKLYDCPKLKYFSEK 411 (461)
Q Consensus 334 ~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~-~L~l~~C~~l~~~~~~ 411 (461)
.+++|+++++.+| ++..++..++ ..+++|++|++.+ +++.|+ ..|..|++|+ .+.+.+ +++.++..
T Consensus 224 ~~~~L~~l~L~~n--~i~~I~~~aF------~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKT--NATTIPDFTF------AQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp HCTTCCEEECTTB--CCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred hcCCCeEEECCCC--CcceecHhhh------hCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence 3678888888876 6777777655 3567788888876 366666 4567778887 888875 67777664
Q ss_pred CC--cccccEeeccCC
Q 045021 412 GL--PSSLLRLYIDEC 425 (461)
Q Consensus 412 ~~--~~~L~~L~i~~c 425 (461)
.+ +++|+.+++++.
T Consensus 292 aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGD 307 (329)
T ss_dssp TTTTCTTEEEEEECSS
T ss_pred hhhCCccCCEEEeCCC
Confidence 33 567777777543
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=5.3e-10 Score=98.47 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=53.4
Q ss_pred hcCCCccceeeccccccceec-ccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccccccccCCCCC
Q 045021 213 LDNNTSLEMISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEALPKGLHNLKS 290 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~ 290 (461)
+..+++|++|+++++. +..+ +..+..+++|++|++++| .+..++. ....+++|++|++++|......|..+..+++
T Consensus 53 ~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 4445555555555542 3222 234555555555555554 2333332 2333455566665554322222445556666
Q ss_pred ccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 291 LKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 291 L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
|++|++++ .+..++.. ..+++|++|++++|+
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 66666666 45444221 344566666666665
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=5.3e-10 Score=99.15 Aligned_cols=126 Identities=20% Similarity=0.203 Sum_probs=80.8
Q ss_pred CCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccCCCC-CCCCCCcceE
Q 045021 193 PSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSFPEG-GLPCAKLSKL 270 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 270 (461)
++|+.|+++++......+..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..++.. ...+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 357777777753333335566777788888887763 44444 44577778888888776 45555543 3456677777
Q ss_pred eeccCccccccccccCCCCCccEEEecc-cCCCcCCC--CCCCCcceEEeecCc
Q 045021 271 GIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED--GLPTNLHFLKIERNM 321 (461)
Q Consensus 271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~~~ 321 (461)
++++| .++.+|..+..+++|++|++++ .+..++.. ..+++|++|++++|+
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77774 4556776677777777777777 55555532 334566666666655
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.9e-10 Score=96.68 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=67.8
Q ss_pred CcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021 266 KLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI 343 (461)
Q Consensus 266 ~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 343 (461)
+|++|++++|... ..+|..+..+++|++|++++ .+..++....+++|++|++++|. +.... ...+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGL-DMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCC-CHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHH-HHHHhhCCCCCEEec
Confidence 4444444443211 13344444455555555555 33333323344555555665555 22111 112345677777777
Q ss_pred ecCCCcccccCc-cccccCCCCCCCCCcceeecCCCCCCccccc----chhhccCCcEEEecCCCCCcccCC
Q 045021 344 EGCDDDMVSFPP-EDRRLGTTLPLPASLASLTIGDFPNLERLSS----SIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 344 ~~~~~~~~~i~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
++| .+..++. ..+ ..+++|+.|+++++ .+..++. .+..+++|++|++.+| .++.+|.
T Consensus 103 s~N--~l~~~~~~~~l------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 103 SGN--KLKDISTLEPL------KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp BSS--SCCSSGGGGGG------SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred cCC--ccCcchhHHHH------hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 776 5555542 113 24567777777773 5555543 5666777777777773 4444443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.11 E-value=2e-10 Score=96.62 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=72.1
Q ss_pred cCCCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCcc
Q 045021 214 DNNTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLK 292 (461)
Q Consensus 214 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~ 292 (461)
...++|++|++++|... ..+|..+..+++|+.|++++|. +..+ .....+++|++|++++|.....+|..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34567777777776422 2566666777777888877763 4444 4444456777777777543333555555567777
Q ss_pred EEEecc-cCCCcC---CCCCCCCcceEEeecCchhhHHhh--hhcccCCCCcCEEEEecC
Q 045021 293 KLRIGG-KLPSLE---EDGLPTNLHFLKIERNMEIWKSMI--ERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 293 ~L~l~~-~~~~l~---~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~ 346 (461)
+|++++ .+..++ ....+++|++|++++|. +..... ...+..+++|++|++++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 777666 444443 12334455555555554 211111 113445555555555554
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=8.1e-10 Score=97.26 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=88.0
Q ss_pred CccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhhHHhhcCCCccceeeccccccceecc-cc
Q 045021 158 LLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLP-SG 236 (461)
Q Consensus 158 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 236 (461)
+++.|++++ +.++. ++...+... ++|+.|++.++..-...+..+..+++|++|++++| .+..++ ..
T Consensus 33 ~l~~L~l~~-n~i~~-i~~~~~~~l----------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 99 (220)
T 2v9t_B 33 TITEIRLEQ-NTIKV-IPPGAFSPY----------KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSL 99 (220)
T ss_dssp TCCEEECCS-SCCCE-ECTTSSTTC----------TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTT
T ss_pred CCCEEECCC-CcCCC-cCHhHhhCC----------CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhH
Confidence 577777777 66666 444444332 56888888775433333567888889999999887 455555 44
Q ss_pred cCCCCCccEEEecCCCCCccCC-CCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc
Q 045021 237 LHNLRQLQEIQLWGCENLVSFP-EGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG 298 (461)
Q Consensus 237 ~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~ 298 (461)
+..+++|+.|++++| .+..++ .....+++|++|++++|. ++.++ ..+..+++|++|++++
T Consensus 100 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 678899999999987 445543 455567789999998864 44444 4688899999999877
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=3.3e-10 Score=107.87 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCccEEEEecCCchhhh-HHhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCCCCCccC-CCCCCCCCCcce
Q 045021 193 PSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGCENLVSF-PEGGLPCAKLSK 269 (461)
Q Consensus 193 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~ 269 (461)
++|+.|++.++ .+..+ +..+..+++|++|++++|. +..++ ..+..+++|+.|++++|. +..+ +.....+++|++
T Consensus 64 ~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 64 TNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred cccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCE
Confidence 34556665553 22222 2345556666666666653 33332 345566666666666653 3333 233444556666
Q ss_pred EeeccCcccccccccc----CCCCCccEEEecc-cCCCcCCC--CCCCC--cceEEeecCc
Q 045021 270 LGIYRCERLEALPKGL----HNLKSLKKLRIGG-KLPSLEED--GLPTN--LHFLKIERNM 321 (461)
Q Consensus 270 L~l~~c~~~~~~~~~~----~~l~~L~~L~l~~-~~~~l~~~--~~~~~--L~~L~l~~~~ 321 (461)
|++++| .++.+|..+ ..+++|++|++++ .+..++.. ..++. ++.|++.+|+
T Consensus 141 L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 141 LYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666663 344444422 4566666666666 55544421 12222 3556666654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=2.8e-13 Score=136.39 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=43.3
Q ss_pred hcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccc--ccccCCCCC
Q 045021 213 LDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEAL--PKGLHNLKS 290 (461)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~--~~~~~~l~~ 290 (461)
++.+++|+.|++++| .+..+|..++.+++|+.|++++| .+..+| ....+++|++|++++| .++.+ |..++.+++
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPR 534 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTT
T ss_pred ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCC
Confidence 444555555555554 33344555555555555555554 333344 3334445555555553 23333 455555556
Q ss_pred ccEEEecc-cCCCc
Q 045021 291 LKKLRIGG-KLPSL 303 (461)
Q Consensus 291 L~~L~l~~-~~~~l 303 (461)
|++|++++ .+..+
T Consensus 535 L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 535 LVLLNLQGNSLCQE 548 (567)
T ss_dssp CCEEECTTSGGGGS
T ss_pred CCEEEecCCcCCCC
Confidence 66666655 44333
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=4.1e-10 Score=92.58 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=58.0
Q ss_pred CcceEeeccCccc-cccccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEE
Q 045021 266 KLSKLGIYRCERL-EALPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTI 343 (461)
Q Consensus 266 ~L~~L~l~~c~~~-~~~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 343 (461)
+++.|++++|... ..+|..+..+++|++|++++ .+..++....+++|++|++++|. +.... ...+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGL-EVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCT-HHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchH-HHHhhhCCCCCEEEC
Confidence 3444444443211 13343444445555555544 33333222334455555555554 22111 112344666666666
Q ss_pred ecCCCcccccC--ccccccCCCCCCCCCcceeecCCCCCCccccc----chhhccCCcEEEec
Q 045021 344 EGCDDDMVSFP--PEDRRLGTTLPLPASLASLTIGDFPNLERLSS----SIVDLQNLKYLKLY 400 (461)
Q Consensus 344 ~~~~~~~~~i~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~----~~~~~~~L~~L~l~ 400 (461)
++| .+..++ .. + ..+++|++|+++++ .+..++. .+..+++|+.|+++
T Consensus 96 s~N--~i~~~~~~~~-~------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGN--KIKDLSTIEP-L------KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTS--CCCSHHHHGG-G------GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCC--cCCChHHHHH-H------hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 665 444443 22 2 24456666666663 4555443 45566666666654
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=2.5e-08 Score=95.86 Aligned_cols=210 Identities=12% Similarity=0.126 Sum_probs=125.6
Q ss_pred CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEe
Q 045021 194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLG 271 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 271 (461)
+|+.+.+.. .+..+. .++..+.+|+.+++..+ .+..++...-.+.+|+.+.+.. .+..+.. ....+++|+.+.
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 366665554 233332 25666666777766653 3444443222246666666653 2444444 333455677776
Q ss_pred eccCcccccccc-ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchh---hHHhhhhcccCCCCcCEEEEec
Q 045021 272 IYRCERLEALPK-GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEI---WKSMIERGFHKFSSLRHLTIEG 345 (461)
Q Consensus 272 l~~c~~~~~~~~-~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l---~~~~~~~~~~~l~~L~~L~l~~ 345 (461)
+.+ .++.++. +|.+ .+|+.+.+.+.+..++.. ..+++|+.+.+.++... ........+..+++|+.+.+.+
T Consensus 233 l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 233 IPE--NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCT--TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cCC--CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 654 2444433 3444 567777775555444433 34567777777665421 0013344678888999998885
Q ss_pred CCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCCC---CCcccccEee
Q 045021 346 CDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEK---GLPSSLLRLY 421 (461)
Q Consensus 346 ~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~---~~~~~L~~L~ 421 (461)
++..++..++ ..+++|+.+++.. +++.+. ..|..+ +|+.+.+.+ +.+..++.. +.+..++.|.
T Consensus 310 ---~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 310 ---SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp ---TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEE
T ss_pred ---ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEE
Confidence 5777777655 3667899999965 577775 557778 999999988 666766653 3346788888
Q ss_pred ccC
Q 045021 422 IDE 424 (461)
Q Consensus 422 i~~ 424 (461)
|-.
T Consensus 377 vp~ 379 (401)
T 4fdw_A 377 VPA 379 (401)
T ss_dssp ECG
T ss_pred eCH
Confidence 865
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=6e-08 Score=93.18 Aligned_cols=253 Identities=11% Similarity=0.178 Sum_probs=153.8
Q ss_pred CCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCccc
Q 045021 29 CRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE 105 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 105 (461)
..++.+.+-+ .++.++ ..|.++ +|+.+.+.. .++.++. +.. .+|+.+.+.. .++.++...+.. |++|+
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~-c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYY-CYNLK 183 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCT--TCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTT-CTTCC
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCC--CccEECHHhcCC-CCceEEEeCC--CccEehHHHhhC-cccCC
Confidence 5556666643 234443 245554 577777765 2555554 334 3577777765 366666655543 57777
Q ss_pred EEEeeCCCCCcccccc-CCCCCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhh
Q 045021 106 ILKIWSCHSLPYIARV-QLPPSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLE 184 (461)
Q Consensus 106 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 184 (461)
.+++.+ +.++.++.. -...+|+.+.+.. .++.++ ..... .+++|+.+.+.. .++. ++...+..
T Consensus 184 ~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~--~~aF~-----~~~~L~~l~l~~--~l~~-I~~~aF~~--- 247 (401)
T 4fdw_A 184 KADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIG--SQAFL-----KTSQLKTIEIPE--NVST-IGQEAFRE--- 247 (401)
T ss_dssp EEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEEC--TTTTT-----TCTTCCCEECCT--TCCE-ECTTTTTT---
T ss_pred eeecCC-CcceEechhhEeecccCEEEeCC--chheeh--hhHhh-----CCCCCCEEecCC--CccC-cccccccc---
Confidence 777765 345555544 2246677777763 255555 43322 134677777764 3444 44444433
Q ss_pred hcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccceeeccccccc-----eecccccCCCCCccEEEecCCCCCccCC
Q 045021 185 SLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLEMISILWCENL-----KFLPSGLHNLRQLQEIQLWGCENLVSFP 258 (461)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 258 (461)
.+|+.+.+.. .+..+ ..++..+++|+.+.+.++... ..-..+|.++++|+.+.+.. .+..+.
T Consensus 248 --------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~ 315 (401)
T 4fdw_A 248 --------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILG 315 (401)
T ss_dssp --------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred --------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEh
Confidence 2578888754 34444 337778888888888764221 12346788888999998874 356665
Q ss_pred C-CCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc-cCCCcCCC---CCCCCcceEEeecCc
Q 045021 259 E-GGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG-KLPSLEED---GLPTNLHFLKIERNM 321 (461)
Q Consensus 259 ~-~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~-~~~~l~~~---~~~~~L~~L~l~~~~ 321 (461)
. ....|++|+.+.+.. .++.++ .+|.++ +|+.+.+.+ ....+... +.+.+++.|.+-...
T Consensus 316 ~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5 344467899998865 355553 377888 999999988 55555443 334578889887755
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=4.4e-10 Score=92.40 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCccceeeccccccc-eecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEE
Q 045021 216 NTSLEMISILWCENL-KFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKL 294 (461)
Q Consensus 216 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L 294 (461)
.++|+.|++++|... +.+|..+..+++|+.|++++| .+..+ .....+++|++|++++|.....+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456666776665322 255665666667777777665 33433 333344566666666543322244444445555555
Q ss_pred EecccCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCc---cccccCCCCCCCCCcc
Q 045021 295 RIGGKLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPP---EDRRLGTTLPLPASLA 371 (461)
Q Consensus 295 ~l~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~---~~~~~~~~~~~~~~L~ 371 (461)
++ ++|. +++......+..+++|++|++++| .+..++. ..+ ..+++|+
T Consensus 94 ~l---------------------s~N~-i~~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~~------~~l~~L~ 143 (149)
T 2je0_A 94 NL---------------------SGNK-IKDLSTIEPLKKLENLKSLDLFNC--EVTNLNDYRENVF------KLLPQLT 143 (149)
T ss_dssp EC---------------------TTSC-CCSHHHHGGGGGCTTCCEEECTTC--GGGGSTTHHHHHH------HHCTTCC
T ss_pred EC---------------------CCCc-CCChHHHHHHhhCCCCCEEeCcCC--cccchHHHHHHHH------HHCCCcc
Confidence 44 4444 221111124556666777777665 5555544 112 1455666
Q ss_pred eeecC
Q 045021 372 SLTIG 376 (461)
Q Consensus 372 ~L~l~ 376 (461)
.|+++
T Consensus 144 ~L~l~ 148 (149)
T 2je0_A 144 YLDGY 148 (149)
T ss_dssp EETTB
T ss_pred cccCC
Confidence 66665
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=2.6e-08 Score=95.87 Aligned_cols=301 Identities=18% Similarity=0.144 Sum_probs=168.0
Q ss_pred cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CC
Q 045021 48 SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QL 123 (461)
Q Consensus 48 ~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~ 123 (461)
.|.++.+|+.+.+.. .++.++. +..+.+|+.+++.. +++.++...+.. +.+|+.+.+.. .++.+... ..
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~-c~~L~~i~~p~--~l~~i~~~aF~~ 138 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSG-CYALKSILLPL--MLKSIGVEAFKG 138 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT-CTTCCCCCCCT--TCCEECTTTTTT
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcc-cccchhhcccC--ceeeecceeeec
Confidence 577888888888854 4566655 66778888888764 266666655443 46666655543 23332222 11
Q ss_pred CCCccEEecccCCCceEeccCCC-cccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEec
Q 045021 124 PPSLKRLDISHCDNIRTLTVEDG-IQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWS 202 (461)
Q Consensus 124 ~~~L~~L~l~~~~~~~~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (461)
+. +....+. .....+. +. +.. +++|+.+.+.+ .+.. ++...+.. |++|+.+.+..
T Consensus 139 ~~-~~~~~~~--~~~~~i~--~~aF~~------c~~L~~i~l~~--~~~~-I~~~~F~~----------c~~L~~i~l~~ 194 (394)
T 4fs7_A 139 CD-FKEITIP--EGVTVIG--DEAFAT------CESLEYVSLPD--SMET-LHNGLFSG----------CGKLKSIKLPR 194 (394)
T ss_dssp CC-CSEEECC--TTCCEEC--TTTTTT------CTTCCEEECCT--TCCE-ECTTTTTT----------CTTCCBCCCCT
T ss_pred cc-ccccccC--ccccccc--hhhhcc------cCCCcEEecCC--ccce-eccccccC----------CCCceEEEcCC
Confidence 11 1111111 1122222 21 211 34677776653 2333 33333322 24566666644
Q ss_pred CCchhhhH-HhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEeeccCccccc
Q 045021 203 CSKLESIA-ERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGIYRCERLEA 280 (461)
Q Consensus 203 ~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~~~~ 280 (461)
. +..+. ..+..+..|+.+.+... ...+........+|+.+.+... +..+.. ....+..++.+.+... ....
T Consensus 195 ~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i 267 (394)
T 4fs7_A 195 N--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRI 267 (394)
T ss_dssp T--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEE
T ss_pred C--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-ccee
Confidence 2 33322 25677778887777643 2223333344567888877642 233333 3344667888777652 1222
Q ss_pred cccccCCCCCccEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccc
Q 045021 281 LPKGLHNLKSLKKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRR 359 (461)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~ 359 (461)
....+..+..++.+.... .+... ....+.+|+.+.+.++- + ......+..+.+|+++.+.. .+..+...++
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~i~~~-~F~~~~~L~~i~l~~~i--~-~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF- 339 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVIVPEK-TFYGCSSLTEVKLLDSV--K-FIGEEAFESCTSLVSIDLPY---LVEEIGKRSF- 339 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSEECTT-TTTTCTTCCEEEECTTC--C-EECTTTTTTCTTCCEECCCT---TCCEECTTTT-
T ss_pred eccccccccccceeccCceeeccc-ccccccccccccccccc--c-eechhhhcCCCCCCEEEeCC---cccEEhHHhc-
Confidence 233567777777776655 22111 11345678888776542 2 23334577888899888865 4677776645
Q ss_pred cCCCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 360 LGTTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 360 ~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
...++|+++++.. .++.|. ..|..|++|+.+.+..
T Consensus 340 -----~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 340 -----RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -----TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred -----cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 3567889888875 366775 5677888999998864
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=6.5e-10 Score=94.22 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=90.1
Q ss_pred cCCCCCccEEEecc-cCCCcCCCC-CCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCC
Q 045021 285 LHNLKSLKKLRIGG-KLPSLEEDG-LPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGT 362 (461)
Q Consensus 285 ~~~l~~L~~L~l~~-~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~ 362 (461)
+..+++|++|++++ .+..++... ..++|++|++++|. ++.. ..+..+++|++|++++| .+..++...++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N--~l~~~~~~~~~--- 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL---DGFPLLRRLKTLLVNNN--RICRIGEGLDQ--- 85 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE---CCCCCCSSCCEEECCSS--CCCEECSCHHH---
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcc---cccccCCCCCEEECCCC--cccccCcchhh---
Confidence 44556666666666 555554332 23477777777776 3322 25677888888888887 77777654222
Q ss_pred CCCCCCCcceeecCCCCCCccccc--chhhccCCcEEEecCCCCCcccCCC-----CCcccccEeeccCCchhHH
Q 045021 363 TLPLPASLASLTIGDFPNLERLSS--SIVDLQNLKYLKLYDCPKLKYFSEK-----GLPSSLLRLYIDECPLIEE 430 (461)
Q Consensus 363 ~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~C~~l~~~~~~-----~~~~~L~~L~i~~c~~l~~ 430 (461)
.+++|+.|++++ +.+..++. .+..+++|+.|++++ +.++.+|.. ...++|++|+++++..-+.
T Consensus 86 ---~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 86 ---ALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp ---HCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred ---cCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 567888888888 46777775 677888999999988 667776652 2258899999988865443
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=1e-07 Score=91.73 Aligned_cols=305 Identities=15% Similarity=0.131 Sum_probs=193.5
Q ss_pred cccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc--CCCCCccEEecccCCCceEe
Q 045021 66 LVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV--QLPPSLKRLDISHCDNIRTL 141 (461)
Q Consensus 66 l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~l 141 (461)
+++++. +..+.+|+.+.+.. .++.++...+.. |++|+.+++.. .++.++.. ..+++|+.+.+.. .+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~-c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~--~l~~i 131 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS--TVREIGEFAFEN-CSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL--MLKSI 131 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT--TCCEECTTTTTT-CTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEE
T ss_pred EeEhHHHHhhCCCCceEEEeCC--CccCcchhHhhC-CCCCcEEEeCC--CceEccchhhcccccchhhcccC--ceeee
Confidence 445555 67788999998864 478887776654 68899998864 35555443 4456666655543 23333
Q ss_pred ccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCCchhhh-HHhhcCCCccc
Q 045021 142 TVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCSKLESI-AERLDNNTSLE 220 (461)
Q Consensus 142 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~ 220 (461)
. ..... ...+....+. ..+.. +....+ ..|++|+.+.+.+. ...+ ...+..+.+|+
T Consensus 132 ~--~~aF~------~~~~~~~~~~--~~~~~-i~~~aF----------~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 132 G--VEAFK------GCDFKEITIP--EGVTV-IGDEAF----------ATCESLEYVSLPDS--METLHNGLFSGCGKLK 188 (394)
T ss_dssp C--TTTTT------TCCCSEEECC--TTCCE-ECTTTT----------TTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred c--ceeee------cccccccccC--ccccc-cchhhh----------cccCCCcEEecCCc--cceeccccccCCCCce
Confidence 3 22221 1112222221 22222 222222 23467888888652 2333 23678889999
Q ss_pred eeeccccccceec-ccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccc-cccCCCCCccEEEecc
Q 045021 221 MISILWCENLKFL-PSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALP-KGLHNLKSLKKLRIGG 298 (461)
Q Consensus 221 ~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~l~~L~~L~l~~ 298 (461)
.+.+..+ +..+ ..++.++..|+.+.+..+ ...+........+|+.+.+.. .++.+. ..+..+..|+.+.+..
T Consensus 189 ~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 189 SIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp BCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECC
T ss_pred EEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCC
Confidence 9988753 4444 356777888888877653 233334444556889988865 233332 3677889999999877
Q ss_pred cCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecC
Q 045021 299 KLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIG 376 (461)
Q Consensus 299 ~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~ 376 (461)
....+... ..++.++.+...... .+...+..+.+|+.+.+.. .+..+...++ ...++|+++++.
T Consensus 263 ~~~~i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp 328 (394)
T 4fs7_A 263 NKLRIGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLD---SVKFIGEEAF------ESCTSLVSIDLP 328 (394)
T ss_dssp TTCEECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECT---TCCEECTTTT------TTCTTCCEECCC
T ss_pred CcceeeccccccccccceeccCcee-----ecccccccccccccccccc---ccceechhhh------cCCCCCCEEEeC
Confidence 33333332 345677777765543 2333577889999999976 4777777655 366799999997
Q ss_pred CCCCCcccc-cchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccC
Q 045021 377 DFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDE 424 (461)
Q Consensus 377 ~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~ 424 (461)
+ .++.|. ..|..|.+|+.+.+.. +++.++.... +++|+.+++..
T Consensus 329 ~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 329 Y--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp T--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred C--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 5 577776 5678899999999975 4888877544 57899998854
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=5.3e-09 Score=89.87 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=71.9
Q ss_pred cceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC---CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEE
Q 045021 267 LSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED---GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLT 342 (461)
Q Consensus 267 L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 342 (461)
-+++++++ ..++.+|..+. ++|++|++++ .+..++.. ..+++|++|++++|. ++. .....+..+++|++|+
T Consensus 10 ~~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTG-IEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCC-BCTTTTTTCTTCCEEE
T ss_pred CCEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCC-cCHhHcCCcccCCEEE
Confidence 36667666 34566665433 2777777777 65555532 345667777777665 221 1122456666777777
Q ss_pred EecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccc-ccchhhccCCcEEEecCCCCCc
Q 045021 343 IEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERL-SSSIVDLQNLKYLKLYDCPKLK 406 (461)
Q Consensus 343 l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~C~~l~ 406 (461)
+++| .+..++...+ ..+++|++|++++ +.+..+ +..+..+++|++|++++ +.++
T Consensus 85 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 139 (192)
T 1w8a_A 85 LGEN--KIKEISNKMF------LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS-NPFN 139 (192)
T ss_dssp CCSC--CCCEECSSSS------TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred CCCC--cCCccCHHHh------cCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCC-CCcc
Confidence 7766 5555554423 2456677777776 345443 45566666777777766 4443
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.90 E-value=2.3e-09 Score=90.83 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=76.7
Q ss_pred CCccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccCCCCCCCccEEEEeecCCccccCccc-ccCCCCcccEE
Q 045021 29 CRLEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPEVALPSKLKKIEIRECDALKSLPEAW-MCGTNSSLEIL 107 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L 107 (461)
++|++|+++++ .+..++......++|++|++++| .+..++.++.+++|++|+++++. +..+|..+ ... ++|+.|
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l--~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQAL--PDLTEL 93 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHC--TTCCEE
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhhcC--CCCCEE
Confidence 88999999985 46777653334459999999997 56667668889999999999976 77777655 444 889999
Q ss_pred EeeCCCCCccccc---cCCCCCccEEecccCC
Q 045021 108 KIWSCHSLPYIAR---VQLPPSLKRLDISHCD 136 (461)
Q Consensus 108 ~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~ 136 (461)
+++++ .++.++. ...+++|++|+++++.
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 99884 5566654 3566778888887765
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=87.93 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCcccc-cch
Q 045021 310 TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS-SSI 388 (461)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~ 388 (461)
++|++|++++|. ++ ..+ ..+..+++|++|++++| .+..++...+ ..+++|++|++++ +.+..++ ..+
T Consensus 31 ~~l~~L~L~~n~-i~-~ip-~~~~~l~~L~~L~Ls~N--~i~~i~~~~f------~~l~~L~~L~Ls~-N~l~~i~~~~f 98 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FT-LVP-KELSNYKHLTLIDLSNN--RISTLSNQSF------SNMTQLLTLILSY-NRLRCIPPRTF 98 (193)
T ss_dssp TTCCEEECCSSC-CC-SCC-GGGGGCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCBCCTTTT
T ss_pred CCCCEEECCCCc-Cc-hhH-HHhhcccCCCEEECCCC--cCCEeCHhHc------cCCCCCCEEECCC-CccCEeCHHHh
Confidence 345555555544 11 111 23455555666666555 4555444323 2445566666665 3455444 235
Q ss_pred hhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021 389 VDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECP 426 (461)
Q Consensus 389 ~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~ 426 (461)
..+++|++|++++ +.++.++...+ +++|+.|+++++|
T Consensus 99 ~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 5555666666655 55555554322 3555666665543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=1.5e-08 Score=85.79 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=38.0
Q ss_pred ccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcceeecCCCCCCccccc-chhhccCCcEEEecCCCCCcccCC
Q 045021 332 FHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 332 ~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
+..+++|++|++++| .+..++...+ ..+++|+.|++++ +.+..++. .+..+++|++|++++ +.++.++.
T Consensus 48 ~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~ 117 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQN--QIQSLPDGVF------DKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPD 117 (177)
T ss_dssp TTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT
T ss_pred hcCcccccEEECCCC--cceEeChhHc------cCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcC-CcceEeCH
Confidence 344455555555544 4444443312 1344555555555 24444432 234455555555555 44444444
Q ss_pred CCC--cccccEeeccCCc
Q 045021 411 KGL--PSSLLRLYIDECP 426 (461)
Q Consensus 411 ~~~--~~~L~~L~i~~c~ 426 (461)
..+ .++|++|++++++
T Consensus 118 ~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 118 GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhcCCcccCEEEecCCC
Confidence 221 3455555555443
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=1.3e-09 Score=113.04 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=65.6
Q ss_pred ecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCCcCCC-CCC
Q 045021 232 FLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEED-GLP 309 (461)
Q Consensus 232 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~~-~~~ 309 (461)
..+..+..+++|+.|++++| .+..++...+.+++|++|++++| .++.+|..+..+++|++|++++ .+..+|.. ..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34556677778888888876 45566665556677888888875 4557777777888888887777 66555543 334
Q ss_pred CCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecC
Q 045021 310 TNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGC 346 (461)
Q Consensus 310 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 346 (461)
++|++|+|++|. +. ..+. .+..+++|++|++++|
T Consensus 293 ~~L~~L~L~~N~-l~-~lp~-~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VT-TLPW-EFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSSC-CC-CCCS-STTSCTTCCCEECTTS
T ss_pred CCCCEEECCCCC-CC-ccCh-hhhcCCCccEEeCCCC
Confidence 555555555554 22 1222 2555666666666665
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.83 E-value=6.2e-10 Score=115.54 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=69.1
Q ss_pred HHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCC
Q 045021 210 AERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLK 289 (461)
Q Consensus 210 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~ 289 (461)
+..+..+++|+.|++++| .+..++..+..+++|++|++++| .+..+|.....+++|++|++++|. ++.+|..++.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 445666677777777765 34456655666777777777776 445666555556677777777753 446666677777
Q ss_pred CccEEEecc-cCCCcCCC-CCCCCcceEEeecCc
Q 045021 290 SLKKLRIGG-KLPSLEED-GLPTNLHFLKIERNM 321 (461)
Q Consensus 290 ~L~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~~~ 321 (461)
+|++|++++ .+..+|.. ..+++|++|+|++|.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 777777777 66666653 555677777777776
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.76 E-value=3.2e-08 Score=84.94 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=57.7
Q ss_pred CccEEEEecCCchhhhHH--hhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceE
Q 045021 194 SLKSLNVWSCSKLESIAE--RLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKL 270 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (461)
+++.|++.++ .+..++. .+..+++|++|++++|......|..+..+++|+.|++++| .+..++. ....+++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 4666776664 3333332 3566677777777766333333566666777777777776 3343333 23445566666
Q ss_pred eeccCccccccccccCCCCCccEEEecc
Q 045021 271 GIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 271 ~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
++++|......|..+..+++|++|++++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 6666543333344555566666655544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.4e-10 Score=100.43 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=26.5
Q ss_pred ccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc
Q 045021 236 GLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG 298 (461)
Q Consensus 236 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~ 298 (461)
.+..+++|++|++++| .+..++ ....+++|++|++++| .++.+|..+..+++|++|++++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC
Confidence 4555555555555554 233333 2223344555555443 2333443333334444444444
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.74 E-value=5.9e-08 Score=83.32 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=40.3
Q ss_pred CccEEEEecCCchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEee
Q 045021 194 SLKSLNVWSCSKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLGI 272 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 272 (461)
+++.|++.++ .+..++..+..+++|++|++++|......+..+..+++|+.|++++| .+..++. ....+++|++|++
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4666666663 34444455556666666666655322222344555666666666655 3333332 2333445555555
Q ss_pred cc
Q 045021 273 YR 274 (461)
Q Consensus 273 ~~ 274 (461)
++
T Consensus 110 ~~ 111 (193)
T 2wfh_A 110 HG 111 (193)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=7.8e-10 Score=95.67 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=103.2
Q ss_pred CccEEEEecC-CchhhhHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEee
Q 045021 194 SLKSLNVWSC-SKLESIAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGI 272 (461)
Q Consensus 194 ~L~~L~l~~~-~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (461)
.++...+.+. ..++.++..+..+++|++|++++| .+..+| .+..+++|+.|++++| .+..++.....+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 3666666553 235556667888999999999987 455577 7888999999999998 56677665455578999999
Q ss_pred ccCccccccccccCCCCCccEEEecc-cCCCcCC---CCCCCCcceEEeecCchhhHHhh---------hhcccCCCCcC
Q 045021 273 YRCERLEALPKGLHNLKSLKKLRIGG-KLPSLEE---DGLPTNLHFLKIERNMEIWKSMI---------ERGFHKFSSLR 339 (461)
Q Consensus 273 ~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~---------~~~~~~l~~L~ 339 (461)
++| .++.+| .+..+++|++|++++ .+..++. ...+++|++|++++|. +....+ ...+..+++|+
T Consensus 101 ~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 101 SYN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EEE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred cCC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence 996 566666 578889999999988 6665543 3566788888888886 322211 12356677777
Q ss_pred EEE
Q 045021 340 HLT 342 (461)
Q Consensus 340 ~L~ 342 (461)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 775
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=2.3e-07 Score=78.33 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=25.1
Q ss_pred CccEEEEecCCchhhhH-HhhcCCCccceeeccccccceecc-cccCCCCCccEEEecCC
Q 045021 194 SLKSLNVWSCSKLESIA-ERLDNNTSLEMISILWCENLKFLP-SGLHNLRQLQEIQLWGC 251 (461)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 251 (461)
+|+.|++.++. +..++ ..+..+++|++|+++++ .+..++ ..+..+++|+.|++++|
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 35555555532 22222 23344555555555544 232332 22344555555555554
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=5.5e-06 Score=79.52 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=54.1
Q ss_pred CccEEEecCCcCCccc-cccCCCCCCcCEEEecCC--cCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcc
Q 045021 30 RLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRC--HSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL 104 (461)
Q Consensus 30 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~--~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 104 (461)
.|+.+.+-. .++.+ ...|.+|.+|+.+.+..+ ..++.++. +..+.+|+.+.+.. .+..++...+.. +.+|
T Consensus 65 ~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~-c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHH-CEEL 139 (394)
T ss_dssp CCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTT-CTTC
T ss_pred cCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhh-hccc
Confidence 367777743 24555 335777778888777653 23445544 55566666655533 355555544433 4677
Q ss_pred cEEEeeCCCCCcccccc--CCCCCccEEeccc
Q 045021 105 EILKIWSCHSLPYIARV--QLPPSLKRLDISH 134 (461)
Q Consensus 105 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 134 (461)
+.+.+.. .++.+... ..+.+|+.+.+..
T Consensus 140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccc--eeeeecccceecccccccccccc
Confidence 7777653 23333332 4455666666653
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=1e-05 Score=77.63 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=60.8
Q ss_pred ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccC
Q 045021 284 GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLG 361 (461)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~ 361 (461)
+|..+.+|+.+.+.+.+..+... ..+++|+.+.+... ++ ..+...+..+.+|+++.+.. ++..+...++
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~-~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF--- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--IT-ELPESVFAGCISLKSIDIPE---GITQILDDAF--- 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CC-EECTTTTTTCTTCCEEECCT---TCCEECTTTT---
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCc--cc-ccCceeecCCCCcCEEEeCC---cccEehHhHh---
Confidence 45666666666665533333322 23456666666432 11 22333566777777777765 3566666544
Q ss_pred CCCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 362 TTLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 362 ~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
....+|+++.+-. .++.|. ..|..|.+|+.+.+.+
T Consensus 331 ---~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 331 ---AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ---TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ---hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 3556777777754 456665 4566777888887766
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=7.9e-07 Score=74.79 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred cEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEe
Q 045021 32 EYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKI 109 (461)
Q Consensus 32 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 109 (461)
+.+++++ ..+..+|..+. ++|++|+++++ .+..+++ ++.+++|++|+++++. ++.+|...+.. +++|+.|++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~-l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDK-LTQLTQLDL 88 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT-CTTCCEEEC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCC-cchhhEEEC
Confidence 5566666 44566666553 67777777775 4555543 6667777777777754 66666554221 266666666
Q ss_pred eCCCCCcccccc--CCCCCccEEecccC
Q 045021 110 WSCHSLPYIARV--QLPPSLKRLDISHC 135 (461)
Q Consensus 110 ~~~~~l~~~~~~--~~~~~L~~L~l~~~ 135 (461)
++ +.++.++.. ..+++|++|+++++
T Consensus 89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 89 ND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CC-CccceeCHHHhccccCCCEEEeCCC
Confidence 66 344444432 34455555555543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=4.4e-07 Score=76.38 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=61.8
Q ss_pred EEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCcc
Q 045021 293 KLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASLA 371 (461)
Q Consensus 293 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L~ 371 (461)
.+++++ .+..+|.. .+++|++|++++|. +.. .....+..+++|++|++++| ++..++...+ ..+++|+
T Consensus 16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~ 84 (174)
T 2r9u_A 16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQ-ITK-LEPGVFDHLVNLQQLYFNSN--KLTAIPTGVF------DKLTQLT 84 (174)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCC
T ss_pred EEEeCCCCCCccCCC-cCCCCcEEEeCCCC-ccc-cCHHHhcCCcCCCEEECCCC--CCCccChhHh------CCcchhh
Confidence 344444 44444432 23566666666665 221 11224667777788888776 6777766533 2556788
Q ss_pred eeecCCCCCCcccccc-hhhccCCcEEEecCCCCCccc
Q 045021 372 SLTIGDFPNLERLSSS-IVDLQNLKYLKLYDCPKLKYF 408 (461)
Q Consensus 372 ~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~C~~l~~~ 408 (461)
.|++++ +.++.++.. +..+++|++|++.+ +.+...
T Consensus 85 ~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~ 120 (174)
T 2r9u_A 85 QLDLND-NHLKSIPRGAFDNLKSLTHIYLYN-NPWDCE 120 (174)
T ss_dssp EEECCS-SCCCCCCTTTTTTCTTCSEEECCS-SCBCTT
T ss_pred EEECCC-CccceeCHHHhccccCCCEEEeCC-CCcccc
Confidence 888877 567776643 66777888888877 555543
No 145
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.47 E-value=5.1e-05 Score=72.29 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=57.7
Q ss_pred cCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCC
Q 045021 285 LHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGT 362 (461)
Q Consensus 285 ~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~ 362 (461)
+..+.+|+.+.+...+..+... ..+.+|+.+.+...- . ......+..+++|+++.+.++ .++.+...++
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i--~-~i~~~aF~~c~~L~~i~l~~~--~i~~I~~~aF---- 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV--K-TVPYLLCSGCSNLTKVVMDNS--AIETLEPRVF---- 306 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC--S-EECTTTTTTCTTCCEEEECCT--TCCEECTTTT----
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccc--e-ecccccccccccccccccccc--ccceehhhhh----
Confidence 4445555555554433322222 223445555553321 1 112234566677777777664 5666666544
Q ss_pred CCCCCCCcceeecCCCCCCcccc-cchhhccCCcEEEecCCCCCcccCC
Q 045021 363 TLPLPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYDCPKLKYFSE 410 (461)
Q Consensus 363 ~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~C~~l~~~~~ 410 (461)
....+|+++++.. .++.|. ..|..|.+|+.+.+.. +++.+..
T Consensus 307 --~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 307 --MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp --TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred --cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 2456677777753 455554 4466677777776643 4555544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.47 E-value=8.7e-07 Score=74.22 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccEEEecCCcCCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEE
Q 045021 31 LEYLILRYCKGLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILK 108 (461)
Q Consensus 31 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 108 (461)
.+++++++ ..+..+|..+. ++|++|++++| .+..+++ +..+++|++|+++++. ++.++...+.. +++|+.|+
T Consensus 11 ~~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~-l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDK-LTQLTQLS 84 (170)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTT-CTTCCEEE
T ss_pred CCEEEeCC-CCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccC-CCCCCEEE
Confidence 35666666 44566665443 66777777765 4555533 5666777777777654 66665544321 26666666
Q ss_pred eeCCCCCcccccc--CCCCCccEEecccC
Q 045021 109 IWSCHSLPYIARV--QLPPSLKRLDISHC 135 (461)
Q Consensus 109 l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 135 (461)
+++ +.++.++.. ..+++|++|+++++
T Consensus 85 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 85 LND-NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 665 344444332 34445555555543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.42 E-value=6.7e-07 Score=74.93 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=58.2
Q ss_pred cEEEecc-cCCCcCCCCCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCCcccccCccccccCCCCCCCCCc
Q 045021 292 KKLRIGG-KLPSLEEDGLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDDDMVSFPPEDRRLGTTLPLPASL 370 (461)
Q Consensus 292 ~~L~l~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~i~~~~~~~~~~~~~~~~L 370 (461)
+.+++++ .+..+|.. .+++|++|++++|. +.. .....+..+++|++|++++| ++..++...+ ..+++|
T Consensus 12 ~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~-i~~-~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L 80 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-IPTTTQVLYLYDNQ-ITK-LEPGVFDRLTQLTRLDLDNN--QLTVLPAGVF------DKLTQL 80 (170)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTC
T ss_pred CEEEeCCCCcCccCcc-CCCCCcEEEcCCCc-CCc-cChhhhcCcccCCEEECCCC--CcCccChhhc------cCCCCC
Confidence 3444444 44444432 23456666666654 221 11223566777777777776 6666665433 245677
Q ss_pred ceeecCCCCCCccccc-chhhccCCcEEEecCCCCCcc
Q 045021 371 ASLTIGDFPNLERLSS-SIVDLQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 371 ~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~C~~l~~ 407 (461)
+.|++++ +.++.++. .+..+++|++|++++ +.++.
T Consensus 81 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~~~c 116 (170)
T 3g39_A 81 TQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN-NPWDC 116 (170)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCBCT
T ss_pred CEEECCC-CccCEeCHHHhcCCCCCCEEEeCC-CCCCC
Confidence 7777777 46666653 366677777777777 54443
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=7.9e-05 Score=70.96 Aligned_cols=289 Identities=13% Similarity=0.110 Sum_probs=162.3
Q ss_pred cCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccccCCCCcccEEEeeCCCCCcccccc-CCC
Q 045021 48 SSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILKIWSCHSLPYIARV-QLP 124 (461)
Q Consensus 48 ~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 124 (461)
|+....+|+.+.+.. .++.++. +..|.+|+.+.+.. .++.++...+.. .+|+.+.+.. .++.+... -..
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~--c~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD--TKLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT--CCCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC--CCCceEECCc--eeeEeccceecc
Confidence 566778899999975 5777776 77899999999965 388888877766 4688877753 45555444 122
Q ss_pred CCccEEecccCCCceEeccCCCcccccccccccCccEEEEecCCCCeecccCCCCcchhhhcccCCCCCCccEEEEecCC
Q 045021 125 PSLKRLDISHCDNIRTLTVEDGIQSSSRRYTSYLLEKLEIWDCPSLTCIFSKNELPATLESLEVGNQPPSLKSLNVWSCS 204 (461)
Q Consensus 125 ~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (461)
.+|+.+.+... +..+. ..... ..+++.+.+-. .++. +....+.. +.+++...+....
T Consensus 113 ~~L~~i~lp~~--~~~i~--~~~F~------~~~l~~~~~~~--~v~~-i~~~~f~~----------~~~l~~~~~~~~~ 169 (379)
T 4h09_A 113 TDLDDFEFPGA--TTEIG--NYIFY------NSSVKRIVIPK--SVTT-IKDGIGYK----------AENLEKIEVSSNN 169 (379)
T ss_dssp CCCSEEECCTT--CCEEC--TTTTT------TCCCCEEEECT--TCCE-ECSCTTTT----------CTTCCEEEECTTC
T ss_pred CCcccccCCCc--ccccc--ccccc------cceeeeeeccc--eeec-cccchhcc----------ccccccccccccc
Confidence 46777777642 34444 33322 22455554432 3333 22222211 1345555554321
Q ss_pred chhh------------hHHhhcCCCccceeeccccccceecccccCCCCCccEEEecCCCCCccCCC-CCCCCCCcceEe
Q 045021 205 KLES------------IAERLDNNTSLEMISILWCENLKFLPSGLHNLRQLQEIQLWGCENLVSFPE-GGLPCAKLSKLG 271 (461)
Q Consensus 205 ~l~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 271 (461)
.... ....+.....+..+.+... ........+..+.+|+.+.+... +..+.. ....+..|+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 170 KNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp SSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEE
T ss_pred ceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccceEEE
Confidence 1110 0012223333444443321 11112334555677777777543 333333 334466788887
Q ss_pred eccCcccccccc-ccCCCCCccEEEecccCCCcCCC--CCCCCcceEEeecCchhhHHhhhhcccCCCCcCEEEEecCCC
Q 045021 272 IYRCERLEALPK-GLHNLKSLKKLRIGGKLPSLEED--GLPTNLHFLKIERNMEIWKSMIERGFHKFSSLRHLTIEGCDD 348 (461)
Q Consensus 272 l~~c~~~~~~~~-~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 348 (461)
+.. .++.+.. ++..+.+|+.+.+...+..++.. ..+++|+.+.+.++. ++ ......+.++.+|+++.+..
T Consensus 247 lp~--~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~-i~-~I~~~aF~~c~~L~~i~lp~--- 319 (379)
T 4h09_A 247 IPK--NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSA-IE-TLEPRVFMDCVKLSSVTLPT--- 319 (379)
T ss_dssp ECT--TCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTT-CC-EECTTTTTTCTTCCEEECCT---
T ss_pred cCC--CccEeCccccceeehhccccccccceeccccccccccccccccccccc-cc-eehhhhhcCCCCCCEEEcCc---
Confidence 755 2444433 66778888888886655555443 445788888886543 21 23334577788888888865
Q ss_pred cccccCccccccCCCCCCCCCcceeecCCCCCCcccc
Q 045021 349 DMVSFPPEDRRLGTTLPLPASLASLTIGDFPNLERLS 385 (461)
Q Consensus 349 ~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 385 (461)
.+..|...++ ...++|+++.+.. .++.|.
T Consensus 320 ~l~~I~~~aF------~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 320 ALKTIQVYAF------KNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TCCEECTTTT------TTCTTCCCCCCCT--TCCEEC
T ss_pred cccEEHHHHh------hCCCCCCEEEECC--ccCEEc
Confidence 4666666544 2556777777753 355554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=3e-07 Score=76.36 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=26.8
Q ss_pred CcCEEEecCCcCccc--ccCCCCCCCccEEEEeecCCccccCcccccCC---CCcccEEEeeCCCCCcc
Q 045021 54 SLREIEICRCHSLVS--FPEVALPSKLKKIEIRECDALKSLPEAWMCGT---NSSLEILKIWSCHSLPY 117 (461)
Q Consensus 54 ~L~~L~l~~~~~l~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~~~~l~~ 117 (461)
+|++|++++|. +.+ +..+..+++|++|++++|..+++......... +++|++|++++|..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 45555555553 221 12244455555555555544444322222110 12455555555544444
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=7.3e-07 Score=84.14 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=31.4
Q ss_pred cccCCCCCccEEEecCCCCCccCCCCCCCCCCcceEeeccCcccccccccc--CCCCCccEEEec
Q 045021 235 SGLHNLRQLQEIQLWGCENLVSFPEGGLPCAKLSKLGIYRCERLEALPKGL--HNLKSLKKLRIG 297 (461)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~--~~l~~L~~L~l~ 297 (461)
..+..+|+|+.|+++++..+ .++.. ..++|++|++..|.........+ ..+|+|++|+++
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 33455677888888776332 22221 24577777776654211111112 256666666663
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=5.2e-07 Score=74.97 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCccEEEecCCcCCccc-cccCCCCCCcCEEEecCCcCccccc--CCCCC----CCccEEEEeecCCccccCcccccCCC
Q 045021 29 CRLEYLILRYCKGLVKL-PQSSLSLSSLREIEICRCHSLVSFP--EVALP----SKLKKIEIRECDALKSLPEAWMCGTN 101 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l----~~L~~L~l~~~~~l~~~~~~~~~~~~ 101 (461)
.+|++|++++|. ++.. -..+.++++|++|+|++|..+++-. .++.+ ++|++|++++|+.+++-....... +
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 479999999987 4432 3346899999999999998776432 24443 589999999999888755444332 5
Q ss_pred CcccEEEeeCCCCCcccc
Q 045021 102 SSLEILKIWSCHSLPYIA 119 (461)
Q Consensus 102 ~~L~~L~l~~~~~l~~~~ 119 (461)
++|++|++++|+.+++..
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 999999999999888743
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.20 E-value=2.8e-06 Score=80.07 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCccccccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCccc-ccCCCCcccEEEeeCCCCCcc
Q 045021 41 GLVKLPQSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAW-MCGTNSSLEILKIWSCHSLPY 117 (461)
Q Consensus 41 ~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~ 117 (461)
++..+|. ++.+++|++|+|++++.+..+++ ++.+++|++|+++++. +..++... ... ++|+.|++++ +.++.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l--~~L~~L~l~~-N~l~~ 94 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFT--PRLSRLNLSF-NALES 94 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSC--SCCCEEECCS-SCCSC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCC--cCCCEEeCCC-Cccce
Confidence 3444444 45555555555543223444443 4445555555555533 44433322 222 4555555544 23444
Q ss_pred cc
Q 045021 118 IA 119 (461)
Q Consensus 118 ~~ 119 (461)
++
T Consensus 95 ~~ 96 (347)
T 2ifg_A 95 LS 96 (347)
T ss_dssp CC
T ss_pred eC
Confidence 33
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=6.6e-06 Score=77.56 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=75.0
Q ss_pred cccCCCCCccEEEecCCCC----Cc-----cCCCCCCCCCCcceEeeccCccccccccccCCCCCccEEEecc-cCCC--
Q 045021 235 SGLHNLRQLQEIQLWGCEN----LV-----SFPEGGLPCAKLSKLGIYRCERLEALPKGLHNLKSLKKLRIGG-KLPS-- 302 (461)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~----l~-----~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~l~~L~~L~l~~-~~~~-- 302 (461)
.+...+++|+.|.+.+... +. .+......+|+|+.|.+.+|..+. ++. + .+++|++|++.. .+..
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHH
Confidence 3455678899998865311 10 111112334577777777653332 222 2 256677777665 2211
Q ss_pred cCCC--CCCCCcceEEeecCch-------hhHHhhhhcccCCCCcCEEEEecCCCcccc-cCccccccCCCCCCCCCcce
Q 045021 303 LEED--GLPTNLHFLKIERNME-------IWKSMIERGFHKFSSLRHLTIEGCDDDMVS-FPPEDRRLGTTLPLPASLAS 372 (461)
Q Consensus 303 l~~~--~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-i~~~~~~~~~~~~~~~~L~~ 372 (461)
+... ..+|+|++|+|+.+.. +...........+|+|++|.+.+| .+.. .... +. . ....++|++
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~~~~~-la--~-a~~~~~L~~ 283 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNVVVEM-FL--E-SDILPQLET 283 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHHHHHH-HH--H-CSSGGGCSE
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchHHHHH-HH--h-CccCCCCCE
Confidence 1100 2345677776653211 100001001124667777777665 3221 0000 00 0 013456777
Q ss_pred eecCCCCCCcc-----cccchhhccCCcEEEecCCCCCcc
Q 045021 373 LTIGDFPNLER-----LSSSIVDLQNLKYLKLYDCPKLKY 407 (461)
Q Consensus 373 L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~C~~l~~ 407 (461)
|+++. +.+.+ ++..+..+++|+.|++++| .+..
T Consensus 284 LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 284 MDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp EECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred EECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 77765 34543 2234455666777777663 3443
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.08 E-value=1.3e-05 Score=75.53 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=67.8
Q ss_pred hhhhhhhcCCccEEEecCCcCCcccc-ccCCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEeecCCccccCcccc
Q 045021 21 QQQLCELSCRLEYLILRYCKGLVKLP-QSSLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWM 97 (461)
Q Consensus 21 l~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~ 97 (461)
++.+ ++|++|+|++++.+..++ ..|..+++|++|+|++| .+..+++ +..+++|++|+|+++. +..+|...+
T Consensus 27 l~~~----~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 27 LPGA----ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp SCSC----SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred CCCC----CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 5555 889999998656677776 57999999999999997 6777765 7889999999999965 888887766
Q ss_pred cCCCCcccEEEeeCC
Q 045021 98 CGTNSSLEILKIWSC 112 (461)
Q Consensus 98 ~~~~~~L~~L~l~~~ 112 (461)
.. ..|+.|++.++
T Consensus 101 ~~--~~L~~l~l~~N 113 (347)
T 2ifg_A 101 QG--LSLQELVLSGN 113 (347)
T ss_dssp CS--CCCCEEECCSS
T ss_pred cc--CCceEEEeeCC
Confidence 55 44899998874
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.89 E-value=9.9e-07 Score=83.82 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=101.7
Q ss_pred CCCccEEEecCCCCCccC-----CC-CCCCCCCcceEeeccCccccc-cccccCCCCCccEEEecc-cCCC-----cCCC
Q 045021 240 LRQLQEIQLWGCENLVSF-----PE-GGLPCAKLSKLGIYRCERLEA-LPKGLHNLKSLKKLRIGG-KLPS-----LEED 306 (461)
Q Consensus 240 l~~L~~L~l~~~~~l~~l-----~~-~~~~~~~L~~L~l~~c~~~~~-~~~~~~~l~~L~~L~l~~-~~~~-----l~~~ 306 (461)
++.|+.|++++|. +... .. .....++|++|++++|.--.. +......+++|++|++++ .+.. +...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4689999999984 3321 11 112335899999999753221 112233467899999999 4432 2111
Q ss_pred --CCCCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccccC-----ccccccCCCCCCCCCcceeecC
Q 045021 307 --GLPTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVSFP-----PEDRRLGTTLPLPASLASLTIG 376 (461)
Q Consensus 307 --~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~i~-----~~~~~~~~~~~~~~~L~~L~l~ 376 (461)
...++|++|++++|. +++.. ....+...++|++|++++| .+.... .. + ...++|++|+++
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~~L~~~-L------~~~~~L~~L~Ls 219 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLAAQ-L------DRNRQLQELNVA 219 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHHHHHHH-G------GGCSCCCEEECC
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHHHHHHH-H------hcCCCcCeEECC
Confidence 234689999999997 44322 1223467889999999998 554322 21 2 245689999999
Q ss_pred CCCCCccc-----ccchhhccCCcEEEecCCCCCcccC
Q 045021 377 DFPNLERL-----SSSIVDLQNLKYLKLYDCPKLKYFS 409 (461)
Q Consensus 377 ~~~~l~~i-----~~~~~~~~~L~~L~l~~C~~l~~~~ 409 (461)
+| .+.+. ...+...++|++|++++ +.|+..+
T Consensus 220 ~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g 255 (372)
T 3un9_A 220 YN-GAGDTAALALARAAREHPSLELLHLYF-NELSSEG 255 (372)
T ss_dssp SS-CCCHHHHHHHHHHHHHCSSCCEEECTT-SSCCHHH
T ss_pred CC-CCCHHHHHHHHHHHHhCCCCCEEeccC-CCCCHHH
Confidence 96 56543 34556789999999999 6677643
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.83 E-value=4.6e-07 Score=86.14 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.4
Q ss_pred ccCCCCcCEEEEecC
Q 045021 332 FHKFSSLRHLTIEGC 346 (461)
Q Consensus 332 ~~~l~~L~~L~l~~~ 346 (461)
+...++|++|++++|
T Consensus 207 L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 207 LDRNRQLQELNVAYN 221 (372)
T ss_dssp GGGCSCCCEEECCSS
T ss_pred HhcCCCcCeEECCCC
Confidence 344455666666665
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.72 E-value=0.00057 Score=57.72 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=57.7
Q ss_pred CCCcceEEeecCchhhHHh---hhhcccCCCCcCEEEEecCCCcccc-----cCccccccCCCCCCCCCcceeecCCCCC
Q 045021 309 PTNLHFLKIERNMEIWKSM---IERGFHKFSSLRHLTIEGCDDDMVS-----FPPEDRRLGTTLPLPASLASLTIGDFPN 380 (461)
Q Consensus 309 ~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~ 380 (461)
.++|++|++++|..+.+.. ....+...++|++|++++| .+.. +... + ...++|++|+++++ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~-L------~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEM-L------KVNNTLKSLNVESN-F 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHH-H------HHCSSCCEEECCSS-C
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHH-H------HhCCCcCEEECcCC-c
Confidence 3466666666662233221 1123445667777777776 3322 1111 1 12346777777774 4
Q ss_pred Ccc-----cccchhhccCCcEEEe--cCCCCCcccCCCCC------cccccEeeccCCc
Q 045021 381 LER-----LSSSIVDLQNLKYLKL--YDCPKLKYFSEKGL------PSSLLRLYIDECP 426 (461)
Q Consensus 381 l~~-----i~~~~~~~~~L~~L~l--~~C~~l~~~~~~~~------~~~L~~L~i~~c~ 426 (461)
+.+ +...+...++|++|++ .+ +.+..-....+ .++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 543 2355566677888888 44 56655322111 3577788877774
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.71 E-value=0.0011 Score=59.28 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=29.5
Q ss_pred cCCccEEEecCCcCCccc---cccCCCCCCcCEEEecCCcCcccccCCCCCC--CccEEEEeecC
Q 045021 28 SCRLEYLILRYCKGLVKL---PQSSLSLSSLREIEICRCHSLVSFPEVALPS--KLKKIEIRECD 87 (461)
Q Consensus 28 ~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~l~~~~ 87 (461)
+++|++|+|+++ .+..+ +..+..+++|+.|+|++| .+.++..+..+. +|++|++++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence 366666666652 33332 333445666666666664 344333322222 56666666655
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.52 E-value=0.00092 Score=56.39 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=44.4
Q ss_pred CCccEEEecCCcCCc-----cccccCCCCCCcCEEEecCCcCccc-----ccC-CCCCCCccEEEEeecCCccc-----c
Q 045021 29 CRLEYLILRYCKGLV-----KLPQSSLSLSSLREIEICRCHSLVS-----FPE-VALPSKLKKIEIRECDALKS-----L 92 (461)
Q Consensus 29 ~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~~l~~L~~L~l~~~~~l~~-----~ 92 (461)
+.|++|+|++|..+. .+...+...++|++|+|++|. +.+ +.. +...+.|++|++++|. +.+ +
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHH
Confidence 778888888762333 234455667778888888764 332 111 3345677777777764 433 2
Q ss_pred CcccccCCCCcccEEEe
Q 045021 93 PEAWMCGTNSSLEILKI 109 (461)
Q Consensus 93 ~~~~~~~~~~~L~~L~l 109 (461)
....... ++|++|++
T Consensus 114 ~~~L~~n--~~L~~L~L 128 (185)
T 1io0_A 114 VEALQSN--TSLIELRI 128 (185)
T ss_dssp HHGGGGC--SSCCEEEC
T ss_pred HHHHHhC--CCceEEEe
Confidence 2222222 56666666
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.38 E-value=0.0016 Score=58.18 Aligned_cols=11 Identities=27% Similarity=0.266 Sum_probs=6.4
Q ss_pred CcceEEeecCc
Q 045021 311 NLHFLKIERNM 321 (461)
Q Consensus 311 ~L~~L~l~~~~ 321 (461)
+|++|++.+|+
T Consensus 221 ~L~~L~L~~Np 231 (267)
T 3rw6_A 221 KLEELWLDGNS 231 (267)
T ss_dssp CCSEEECTTST
T ss_pred CcceEEccCCc
Confidence 55555555555
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.20 E-value=0.23 Score=38.67 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 366 LPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 366 ~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
.+++|+.|++++ +.++.++ ..+..+++|+.|++.+
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 555677777776 5666665 3345666677777666
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.34 E-value=0.42 Score=37.16 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=39.0
Q ss_pred eeecCCCCCCc--ccccchhhccCCcEEEecCCCCCcccCCCCC--cccccEeeccCCc
Q 045021 372 SLTIGDFPNLE--RLSSSIVDLQNLKYLKLYDCPKLKYFSEKGL--PSSLLRLYIDECP 426 (461)
Q Consensus 372 ~L~l~~~~~l~--~i~~~~~~~~~L~~L~l~~C~~l~~~~~~~~--~~~L~~L~i~~c~ 426 (461)
.++-++ ..++ .+|..+. ++|++|++++ ++|+.++...+ .++|++|+++++|
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455566 5666 7774332 4799999999 99999988654 5799999999876
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.91 E-value=0.83 Score=38.31 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=16.0
Q ss_pred CCcceeecCCCCCCcc-----cccchhhccCCcEEEecC
Q 045021 368 ASLASLTIGDFPNLER-----LSSSIVDLQNLKYLKLYD 401 (461)
Q Consensus 368 ~~L~~L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~ 401 (461)
+.|++|++++ +.+.. +.+.+..-+.|++|++++
T Consensus 98 ~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 98 PSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3556666655 33432 123344444566666654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.32 E-value=0.52 Score=39.53 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=9.2
Q ss_pred HhhcCCCccceeecccc
Q 045021 211 ERLDNNTSLEMISILWC 227 (461)
Q Consensus 211 ~~~~~l~~L~~L~l~~~ 227 (461)
..+..-+.|++|++++|
T Consensus 64 ~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANT 80 (197)
T ss_dssp HHHTTCSCCCEEECTTS
T ss_pred HHHhhCCCcCEEEccCC
Confidence 34445555666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.98 E-value=56 Score=23.51 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=23.2
Q ss_pred CCCCcceeecCCCCCCcccc-cchhhccCCcEEEecC
Q 045021 366 LPASLASLTIGDFPNLERLS-SSIVDLQNLKYLKLYD 401 (461)
Q Consensus 366 ~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~ 401 (461)
...+|+++.|-. .++.|. ..|..|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 556677777764 455554 4567788888888876
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.08 E-value=77 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=15.7
Q ss_pred CCCCCCcCEEEecCCcCcccccC--CCCCCCccEEEEee
Q 045021 49 SLSLSSLREIEICRCHSLVSFPE--VALPSKLKKIEIRE 85 (461)
Q Consensus 49 ~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~ 85 (461)
|.+|.+|+.+.|-. .++.+.. +..|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 44555555555533 2333322 44455555555443
Done!