Query 045022
Match_columns 77
No_of_seqs 142 out of 662
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 1.8E-29 3.9E-34 157.3 5.8 62 15-76 1-63 (85)
2 PF07983 X8: X8 domain; Inter 99.9 6.5E-25 1.4E-29 135.2 5.4 62 15-76 1-69 (78)
3 PF09628 YvfG: YvfG protein; 47.0 13 0.00027 22.3 1.3 9 62-70 27-35 (68)
4 cd04366 IlGF_insulin_bombyxin_ 35.4 64 0.0014 17.5 2.9 34 26-62 4-41 (42)
5 PF04255 DUF433: Protein of un 21.6 76 0.0017 17.6 1.7 15 21-35 42-56 (56)
6 PF06558 SecM: Secretion monit 14.3 43 0.00092 23.0 -0.7 11 54-64 64-74 (148)
7 COG2442 Uncharacterized conser 10.3 2.4E+02 0.0052 17.1 1.9 13 23-35 56-68 (79)
8 COG3033 TnaA Tryptophanase [Am 10.3 4.2E+02 0.0091 21.4 3.6 54 20-73 166-240 (471)
9 PF02977 CarbpepA_inh: Carboxy 9.3 1.2E+02 0.0027 16.9 0.3 8 39-46 16-23 (46)
10 PF05184 SapB_1: Saposin-like 9.3 1.3E+02 0.0028 14.8 0.3 18 21-38 20-37 (39)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=1.8e-29 Score=157.26 Aligned_cols=62 Identities=37% Similarity=0.904 Sum_probs=60.0
Q ss_pred eeEEeCCCCChHHHHHHHHhccCc-cccCccCCCCcCCCCCCchhhhhHHHHHHHHHccCCCC
Q 045022 15 TWCIVKPSTGDERLIANIQYCCDH-VDCSIIQPGGACYEPNNNYSHASVVMHLFYRANNKLPH 76 (77)
Q Consensus 15 ~wCVak~~~~~~~l~~~ld~aC~~-~dC~~I~~gg~C~~p~t~~~haSyAfN~Yyq~~~~~~~ 76 (77)
+|||+|+++++++|+++|||||++ +||++|++||+||.|+++++|+|||||+|||++++.++
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~ 63 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSG 63 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 599999999999999999999999 99999999999999999999999999999999988765
No 2
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.91 E-value=6.5e-25 Score=135.20 Aligned_cols=62 Identities=32% Similarity=0.729 Sum_probs=53.7
Q ss_pred eeEEeCCCCChHHHHHHHHhccCc--cccCccCCCCc-----CCCCCCchhhhhHHHHHHHHHccCCCC
Q 045022 15 TWCIVKPSTGDERLIANIQYCCDH--VDCSIIQPGGA-----CYEPNNNYSHASVVMHLFYRANNKLPH 76 (77)
Q Consensus 15 ~wCVak~~~~~~~l~~~ld~aC~~--~dC~~I~~gg~-----C~~p~t~~~haSyAfN~Yyq~~~~~~~ 76 (77)
+|||+||++++++|+++|||||++ +||++|++||+ .|++|+.++|+|||||+|||++++.++
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~ 69 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSS 69 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCC
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 699999999999999999999999 99999999999 777777799999999999999988765
No 3
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=46.99 E-value=13 Score=22.32 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=7.4
Q ss_pred HHHHHHHHH
Q 045022 62 VVMHLFYRA 70 (77)
Q Consensus 62 yAfN~Yyq~ 70 (77)
-|||+||..
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 389999975
No 4
>cd04366 IlGF_insulin_bombyxin_like IlGF_like family, insulin_bombyxin_like subgroup. Members include a number of peptides including insulin, insulin-like growth factors I and II, insect prothoracicotropic hormone (bombyxin), locust insulin-related peptide (LIRP), molluscan insulin-related peptides 1 to 5 (MIP), and C. elegans insulin-like peptides. With the exception of insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=35.36 E-value=64 Score=17.45 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=23.4
Q ss_pred HHHHHHHHhccCccccCccCCCCc----CCCCCCchhhhhH
Q 045022 26 ERLIANIQYCCDHVDCSIIQPGGA----CYEPNNNYSHASV 62 (77)
Q Consensus 26 ~~l~~~ld~aC~~~dC~~I~~gg~----C~~p~t~~~haSy 62 (77)
+.|.+.|.++|+...-. ..|. |+.++|+..-.+|
T Consensus 4 ~~L~~~L~~vC~~~~~~---~~gIvdeCC~~~Ct~~~L~~Y 41 (42)
T cd04366 4 RHLADTLALLCSEYNSP---RRGIVDECCRKSCTLDELLSY 41 (42)
T ss_pred HHHHHHHHHHhCCCCCC---CCChhhccCCCcCCHHHHHhh
Confidence 57889999999972221 1233 9999988766555
No 5
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.57 E-value=76 Score=17.57 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=9.0
Q ss_pred CCCChHHHHHHHHhc
Q 045022 21 PSTGDERLIANIQYC 35 (77)
Q Consensus 21 ~~~~~~~l~~~ld~a 35 (77)
|+.+.+++.++|.|+
T Consensus 42 p~Lt~~~i~aAl~ya 56 (56)
T PF04255_consen 42 PSLTLEDIRAALAYA 56 (56)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC
Confidence 445677777777774
No 6
>PF06558 SecM: Secretion monitor precursor protein (SecM); InterPro: IPR009502 This family consists of several bacterial Secretion monitor precursor (SecM) proteins. SecM is known to regulate SecA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. The eubacterial protein secretion machinery consists of a number of soluble and membrane associated components. One critical element is SecA ATPase, which acts as a molecular motor to promote protein secretion at translocation sites that consist of SecYE, the SecA receptor, and SecG and SecDFyajC proteins, which regulate SecA membrane cycling [].; GO: 0045182 translation regulator activity
Probab=14.28 E-value=43 Score=23.02 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=8.9
Q ss_pred CCchhhhhHHH
Q 045022 54 NNNYSHASVVM 64 (77)
Q Consensus 54 ~t~~~haSyAf 64 (77)
-|+..|+||||
T Consensus 64 RtVIRhLSFa~ 74 (148)
T PF06558_consen 64 RTVIRHLSFAF 74 (148)
T ss_pred HHHHHHhcccc
Confidence 36778899999
No 7
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=10.35 E-value=2.4e+02 Score=17.08 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=8.5
Q ss_pred CChHHHHHHHHhc
Q 045022 23 TGDERLIANIQYC 35 (77)
Q Consensus 23 ~~~~~l~~~ld~a 35 (77)
.+.++++++|.|+
T Consensus 56 Lt~~dI~aal~ya 68 (79)
T COG2442 56 LTLEDIRAALRYA 68 (79)
T ss_pred CCHHHHHHHHHHH
Confidence 4556677777765
No 8
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=10.33 E-value=4.2e+02 Score=21.38 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=39.6
Q ss_pred CCCCChHHHHHHHHhccCc---cccCccCCCCcCCCCCCch------------------hhhhHHHHHHHHHccC
Q 045022 20 KPSTGDERLIANIQYCCDH---VDCSIIQPGGACYEPNNNY------------------SHASVVMHLFYRANNK 73 (77)
Q Consensus 20 k~~~~~~~l~~~ld~aC~~---~dC~~I~~gg~C~~p~t~~------------------~haSyAfN~Yyq~~~~ 73 (77)
|-+.|.+.|+..||.+=.. .-|..|.-|..|.+|-++. .-+-||=|.||-+++.
T Consensus 166 KGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE 240 (471)
T COG3033 166 KGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQRE 240 (471)
T ss_pred CCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcC
Confidence 4556889999999988765 3577777777777775433 3467888999988753
No 9
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=9.31 E-value=1.2e+02 Score=16.91 Aligned_cols=8 Identities=50% Similarity=0.609 Sum_probs=4.3
Q ss_pred cccCccCC
Q 045022 39 VDCSIIQP 46 (77)
Q Consensus 39 ~dC~~I~~ 46 (77)
.||..|--
T Consensus 16 sDC~g~tl 23 (46)
T PF02977_consen 16 SDCSGITL 23 (46)
T ss_dssp CCCTTSSS
T ss_pred ccccceee
Confidence 56665543
No 10
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=9.29 E-value=1.3e+02 Score=14.81 Aligned_cols=18 Identities=11% Similarity=0.425 Sum_probs=13.4
Q ss_pred CCCChHHHHHHHHhccCc
Q 045022 21 PSTGDERLIANIQYCCDH 38 (77)
Q Consensus 21 ~~~~~~~l~~~ld~aC~~ 38 (77)
.+.+.+++...|+-+|..
T Consensus 20 ~~~t~~~I~~~l~~~C~~ 37 (39)
T PF05184_consen 20 NNKTEEEIKKALEKACNK 37 (39)
T ss_dssp STCHHHHHHHHHHHHHTT
T ss_pred cCccHHHHHHHHHHHHhh
Confidence 345677888999988864
Done!