BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045023
(812 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust.
Identities = 273/591 (46%), Positives = 392/591 (66%), Gaps = 58/591 (9%)
Query: 9 RLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHF 68
RLR++IR+IR +T AEER +++KECAAIR++ E D YR RN+AKL+++HMLGYP HF
Sbjct: 11 RLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHF 70
Query: 69 GQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCA 128
GQ+ECLK IAS F +KRIGYLG MLLLDERQ+V +L+TN +K DLNH+ Q++ GLALC
Sbjct: 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCT 130
Query: 129 LGNICSAEMARDLAPEVERLLQFRDPN------------IRKKPKCLD------------ 164
LG + S+EM RDLA EVE+LL+ + IRK P+ ++
Sbjct: 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNE 190
Query: 165 --------------------------------GLVKTLRDVVNSPYAPEYDIAGITDPFX 192
LV+ L++++ S Y+PE+D++GI+DPF
Sbjct: 191 KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250
Query: 193 XXXXXXXXXXXGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGL 252
G+ D D+S+ MNDILAQVAT TE++KN GNAILYE V TIM I+ GL
Sbjct: 251 QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGL 310
Query: 253 RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRA 312
RVLAINILGRFL N D NIRYVAL L+K + D AVQRHR+TI++C+KDLD SI++RA
Sbjct: 311 RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRA 370
Query: 313 LELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKV 372
+EL + LVN +N++ + KEL+ +L+ + EFK D + I EK++P K W+ID +++V
Sbjct: 371 MELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430
Query: 373 LSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432
L+ AG++V+D+ LI +I+N+ ++H YTV+ LY+A+ Q+ LV+VA WCIGEYGD
Sbjct: 431 LTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490
Query: 433 MLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSER 492
+LV+ G E+PI VTE + +D++E + + S T+ A+ A++KLS+RF R
Sbjct: 491 LLVS--GQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNR 548
Query: 493 IRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSG 543
I+ ++ S+ +ELQQR++E+N++ +K+ ++RS L+ERMPV+++ T +G
Sbjct: 549 IKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMPVMEKVTTNG 599
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 187/339 (55%), Gaps = 23/339 (6%)
Query: 211 SDCMNDILAQVATKTESNK----NAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSN 266
++C+ IL + +S K NA NA+L+E + I+ + L V A N LG+FL +
Sbjct: 281 TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 340
Query: 267 RDNNIRYVALNML--MKAITVDAQAVQRHRATILECVK-DLDASIRKRALELVYLLVNES 323
R+ N+RY+AL + + + +AV+ H T++ +K + D S+R+RA++L+Y + + S
Sbjct: 341 RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400
Query: 324 NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDE 383
N + + E++ YLE +D + ++ K+ + EK++ D WY+D +L ++ AG++V +E
Sbjct: 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEE 460
Query: 384 VWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNI 443
VW+ +I ++ N D+ GY + ++ A+Q E+LV+V + +GE+G+++
Sbjct: 461 VWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG------- 513
Query: 444 EDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDII---VQN 500
DP S + + K H + T+A+ + +K + FP I+D++ Q
Sbjct: 514 -DP---RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQL 569
Query: 501 KGSLVLELQQRSIEFNSI-VEKHQNIRSTLVERMPVLDE 538
K + V ELQQR++E+ + +I +T++E MP E
Sbjct: 570 KNADV-ELQQRAVEYLRLSTVASTDILATVLEEMPPFPE 607
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 1 MNPFSSGTRLRDM---IRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLA 54
M S G +R + I IR CK+ E + KE A IR+ + D + + +
Sbjct: 1 MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVC 60
Query: 55 KLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDL 114
KL+FI +LG+ FG ME + ++S + EK+IGYL + +L++ E++ L+ N++K DL
Sbjct: 61 KLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDL 120
Query: 115 NHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDP--NIRKKPK-CLDGLVKTLR 171
N +GLAL + N+ S EMA A E+ ++L D ++++ CL L +T
Sbjct: 121 ASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP 180
Query: 172 DVV 174
D+V
Sbjct: 181 DLV 183
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 193/359 (53%), Gaps = 29/359 (8%)
Query: 211 SDCMNDILAQVATKTESNK----NAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSN 266
++C+ IL + +S K NA NA+L+E + I+ + L V A N LG+FL +
Sbjct: 281 TECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 340
Query: 267 RDNNIRYVALNML--MKAITVDAQAVQRHRATILECVK-DLDASIRKRALELVYLLVNES 323
R+ N+RY+AL + + + +AV+ H T++ +K + D S+R+RA++L+Y + + S
Sbjct: 341 RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400
Query: 324 NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDE 383
N + + E++ YLE +D + ++ K+ + EK++ D WY+D +L ++ AG++V +E
Sbjct: 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEE 460
Query: 384 VWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNI 443
VW+ +I ++ N D+ GY + ++ A+Q E+LV+V + +GE+G+++
Sbjct: 461 VWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAG------- 513
Query: 444 EDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDII---VQN 500
DP S + + K H + T+A+ + +K + FP I+D++ Q
Sbjct: 514 -DP---RSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQL 569
Query: 501 KGSLVLELQQRSIEFNSI-VEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSG 558
K + V ELQQR++E+ + +I +T++E MP E R S+ A + G
Sbjct: 570 KNADV-ELQQRAVEYLRLSTVASTDILATVLEEMPPFPE------RESSILAKLKKKKG 621
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 1 MNPFSSGTRLRDM---IRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLA 54
M S G +R + I IR CK+ E + KE A IR+ + D + + +
Sbjct: 1 MPAVSKGEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVC 60
Query: 55 KLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDL 114
KL+FI +LG+ FG ME + ++S + EK+IGYL + +L++ E++ L+ N++K DL
Sbjct: 61 KLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDL 120
Query: 115 NHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDP--NIRKKPK-CLDGLVKTLR 171
N +GLAL + N+ S EMA A E+ ++L D ++++ CL L +T
Sbjct: 121 ASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP 180
Query: 172 DVV 174
D+V
Sbjct: 181 DLV 183
>pdb|3ZY7|A Chain A, Crystal Structure Of Computationally Redesigned Gamma-
Adaptin Appendage Domain Forming A Symmetric Homodimer
pdb|3ZY7|B Chain B, Crystal Structure Of Computationally Redesigned Gamma-
Adaptin Appendage Domain Forming A Symmetric Homodimer
Length = 122
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 691 GPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQL 750
G PSI A+++ L++ F F + NP T+I +N + TDFVFQAAVPK QL
Sbjct: 1 GSMIPSITAYDALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQL 60
Query: 751 HLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
L S + +PA G+ITQ ++V N Q K+ L MR ++ + N V E ++NNFP
Sbjct: 61 QLLSPSSSVVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTFNWNGYKVQSEAEVNNFP 117
>pdb|2E9G|A Chain A, Solution Structure Of The Alpha Adaptinc2 Domain From
Human Adapter-Related Protein Complex 1 Gamma 2 Subunit
Length = 131
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
P + FE ++L +F +PP NP LI T TN S T F+ QAAVPK LQL L
Sbjct: 14 PDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQA 73
Query: 755 ASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
SGNT+PA G ITQ R+ N K PL ++ R+ Y ++ V E ++NN P
Sbjct: 74 PSGNTVPARGGLPITQLFRILNP--NKAPLRLKLRLTYDHFHQSVQEIFEVNNLP 126
>pdb|1IU1|A Chain A, Crystal Structure Of Human Gamma1-Adaptin Ear Domain
pdb|1IU1|B Chain B, Crystal Structure Of Human Gamma1-Adaptin Ear Domain
Length = 146
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 676 LLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVY 735
LLDG + + P D PSI A+ + L++ F F + NP T+I +N +
Sbjct: 11 LLDG-LSSQPLFNDIAAGIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDM 69
Query: 736 TDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLN 795
TDFVFQAAVPK QL L S + +PA G+ITQ ++V N Q K+ L MR ++ Y
Sbjct: 70 TDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTYNHK 127
Query: 796 NRDVLEEGQINNFP 809
+ + ++NNFP
Sbjct: 128 GSAMQDLAEVNNFP 141
>pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
Length = 140
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
PSI A+ + L++ F F + NP T+I +N + TDFVFQAAVPK QL L
Sbjct: 23 PSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLS 82
Query: 755 ASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
S + +PA G+ITQ ++V N Q K+ L MR ++ Y + + ++NNFP
Sbjct: 83 PSSSVVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTYNHKGSAMQDLAEVNNFP 135
>pdb|1GYW|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
A753d Mutant
pdb|1GYW|B Chain B, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
A753d Mutant
Length = 128
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 689 DNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFL 748
D P PSI A+ + L++ F F + NP T+I +N + TDFVFQA VPK
Sbjct: 5 DIAPGIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQADVPKTF 64
Query: 749 QLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNF 808
QL L S + +PA G+ITQ ++V N Q K+ L MR ++ Y + + ++NNF
Sbjct: 65 QLQLLSPSSSVVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTYNHKGSAMQDLAEVNNF 122
Query: 809 P 809
P
Sbjct: 123 P 123
>pdb|2A7B|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
Length = 120
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
PSI A+ + L++ F F + NP T+I +N + TDFVFQAAVPK QL L
Sbjct: 3 PSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLS 62
Query: 755 ASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
S + +PA G+ITQ ++V N Q K+ L MR ++ Y + + ++NNFP
Sbjct: 63 PSSSVVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTYNHKGSAMQDLAEVNNFP 115
>pdb|1GYV|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1,
L762e Mutant
Length = 120
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
PSI A+ + L++ F F + NP T+I +N + TDFVFQAAVPK QL
Sbjct: 3 PSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQELS 62
Query: 755 ASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
S + +PA G+ITQ ++V N Q K+ L MR ++ Y + + ++NNFP
Sbjct: 63 PSSSVVPAFNTGTITQVIKVLNPQ--KQQLRMRIKLTYNHKGSAMQDLAEVNNFP 115
>pdb|1P4U|A Chain A, Crystal Structure Of Gga3 Gae Domain In Complex With
Rabaptin-5 Peptide
Length = 153
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 697 IVAFESSSLRLTFNFSK--PPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
+ A++ + R+ F+F+K PPG P ++ + N++P V QAA PK +++ L P
Sbjct: 29 VTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQP 88
Query: 755 ASGNTL----PASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
SG L P +ITQ + + N K + +R ++ + L + E G+++ FP
Sbjct: 89 PSGTELSPFSPIQPPAAITQVMLLANPLKEK--VRLRYKLTFALGEQLSTEVGEVDQFP 145
>pdb|1OM9|A Chain A, Structure Of The Gga1-Appendage In Complex With The P56
Binding Peptide
pdb|1OM9|B Chain B, Structure Of The Gga1-Appendage In Complex With The P56
Binding Peptide
Length = 154
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 697 IVAFESSSLRLTFNFSKPP--GNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
+ ++ R+ F+F++ P G ++ + + +P + VFQ+AVPK +++ L P
Sbjct: 30 VTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQP 89
Query: 755 ASGNTLPASG----NGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
SG LPA +ITQ L + N Q K + +R ++ + + ++ E G ++ FP
Sbjct: 90 PSGTELPAFNPIVHPSAITQVLLLANPQKEK--VRLRYKLTFTMGDQTYNEMGDVDQFP 146
>pdb|1NA8|A Chain A, Crystal Structure Of Adp-Ribosylation Factor Binding
Protein Gga1
pdb|1NA8|B Chain B, Crystal Structure Of Adp-Ribosylation Factor Binding
Protein Gga1
Length = 154
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 697 IVAFESSSLRLTFNFSKPP--GNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
+ ++ R+ F+F++ P G ++ + + +P + VFQ+AVPK +++ L P
Sbjct: 30 VTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQP 89
Query: 755 ASGNTLPASG----NGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
SG LPA +ITQ L + N Q K + +R ++ + + ++ E G ++ FP
Sbjct: 90 PSGMELPAFNPIVHPSAITQVLLLANPQKEK--VRLRYKLTFTMGDQTYNEMGDVDQFP 146
>pdb|2DWX|A Chain A, Co-Crystal Structure Analysis Of Gga1-Gae With The Wnsf
Motif
pdb|2DWX|B Chain B, Co-Crystal Structure Analysis Of Gga1-Gae With The Wnsf
Motif
pdb|2DWX|C Chain C, Co-Crystal Structure Analysis Of Gga1-Gae With The Wnsf
Motif
pdb|2DWX|D Chain D, Co-Crystal Structure Analysis Of Gga1-Gae With The Wnsf
Motif
pdb|2DWY|A Chain A, Crystal Structure Analysis Of Gga1-Gae
pdb|2DWY|B Chain B, Crystal Structure Analysis Of Gga1-Gae
pdb|2DWY|C Chain C, Crystal Structure Analysis Of Gga1-Gae
pdb|2DWY|D Chain D, Crystal Structure Analysis Of Gga1-Gae
Length = 133
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 697 IVAFESSSLRLTFNFSKPP--GNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDP 754
+ ++ R+ F+F++ P G ++ + + +P + VFQ+AVPK +++ L P
Sbjct: 9 VTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQP 68
Query: 755 ASGNTLPASG----NGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809
SG LPA +ITQ L + N Q K + +R ++ + + ++ E G ++ FP
Sbjct: 69 PSGTELPAFNPIVHPSAITQVLLLANPQKEK--VRLRYKLTFTMGDQTYNEMGDVDQFP 125
>pdb|3MNM|A Chain A, Crystal Structure Of Gae Domain Of Gga2p From
Saccharomyces Cerevisiae
pdb|3MNM|B Chain B, Crystal Structure Of Gae Domain Of Gga2p From
Saccharomyces Cerevisiae
pdb|3MNM|C Chain C, Crystal Structure Of Gae Domain Of Gga2p From
Saccharomyces Cerevisiae
Length = 123
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 723 IQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNS-QHGK 781
I + FTNLS + ++ VF AVPK + L L P S N + + I+Q + N+ +
Sbjct: 35 IXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTIENAPANPS 94
Query: 782 KPLVMRTRIAYKLNNRDVLEEGQINNFP 809
K L ++ ++ Y +N+ EE + P
Sbjct: 95 KALXVKWKVNYSVNSTQA-EETAVFTLP 121
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%)
Query: 31 RKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYL 90
+ E ++A +N ++ R + K++ +G + + + + K++ YL
Sbjct: 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYL 71
Query: 91 GLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQ 150
LM + ++ ++ NS +D N I LA+ +G I ++ L + + L+
Sbjct: 72 YLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131
Query: 151 FRDPNIRK 158
DP +RK
Sbjct: 132 DEDPYVRK 139
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%)
Query: 31 RKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYL 90
+ E ++A +N ++ R + K++ +G + + + + K++ YL
Sbjct: 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYL 71
Query: 91 GLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQ 150
LM + ++ ++ NS +D N I LA+ +G I ++ L + + L+
Sbjct: 72 YLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 131
Query: 151 FRDPNIRK 158
DP +RK
Sbjct: 132 DEDPYVRK 139
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 407 YRAVQTSIEQESLVRVAIWCIGEYG---DMLVNNVGVLNIEDPITVTESDAVDVVEI 460
Y+ V+T E E + +W IG G D+ + N GV +D I V +A +V I
Sbjct: 265 YKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANI 321
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 407 YRAVQTSIEQESLVRVAIWCIGEYG---DMLVNNVGVLNIEDPITVTESDAVDVVEI 460
Y+ V+T E E + +W IG G D+ + N GV +D I V +A +V I
Sbjct: 261 YKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANI 317
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 407 YRAVQTSIEQESLVRVAIWCIGEYG---DMLVNNVGVLNIEDPITVTESDAVDVVEI 460
Y+ V+T E E + +W IG G D+ + N GV +D I V +A +V I
Sbjct: 265 YKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANI 321
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 345 GDLT---AKICSMVEKFS----PDKIWYID-QMLKVLSEAGNFVKDEVWHALIVVISNAS 396
GDLT K+C M K S PD W +D + ++ S V++ H+LI+ +
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 397 DLHGYTVRALYRAVQTSIEQESLV 420
D YT A RA Q S E +V
Sbjct: 77 DAGIYTCIATNRAGQNSFSLELVV 100
>pdb|3RNG|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 498
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3RNF|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
Length = 498
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3N1Y|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
Length = 498
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3RNC|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
Length = 498
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3N20|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
Length = 498
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|2INC|A Chain A, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|A Chain A, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 491
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 271 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 330
Query: 381 KDEVWH 386
VW+
Sbjct: 331 HLGVWY 336
>pdb|3N1Z|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
Length = 498
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|1T0Q|A Chain A, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|A Chain A, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
Length = 498
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 85 KRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPE 144
K++ YL LM + ++ ++ N+ +D N I LA+ +G I ++ L
Sbjct: 66 KKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEP 125
Query: 145 VERLLQFRDPNIRK 158
+ + L+ DP +RK
Sbjct: 126 LRKCLKDEDPYVRK 139
>pdb|3N1X|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
Length = 498
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3RNB|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
Length = 498
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|3RNA|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
Length = 498
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|2RDB|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
Length = 498
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 328 LTKELIDY---LEISDQEFKGDLTAKICSMVEK----FSPDKIWYIDQMLKVLSEAGNFV 380
LT ++DY LE +Q FK + I + E+ DK WY DQ ++ L E + +
Sbjct: 272 LTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGM 331
Query: 381 KDEVWH 386
VW+
Sbjct: 332 HLGVWY 337
>pdb|4GS4|A Chain A, Structure Of The Alpha-Tubulin Acetyltransferase,
Alpha-Tat1
Length = 240
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 600 LLGVDVSPASVQPGTSQAPKAGTD----VLLDLLSIGSPPVQNNSTPSDILSSSQDNKSS 655
+L + P + +PGT+ + ++D L S QN S P S Q N+
Sbjct: 21 VLDQHLRPPARRPGTTTPARVDLQQQIXTIIDELGKASAKAQNLSAPITSASRXQSNRHV 80
Query: 656 VAILDGLSPAPSGGAA 671
V IL S P+G A
Sbjct: 81 VYILKDSSARPAGKGA 96
>pdb|2BW3|A Chain A, Three-Dimensional Structure Of The Hermes Dna Transposase
Length = 534
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 415 EQESLVRVAIWCIGEYGDM-LVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKA 473
+QE + ++ +C+ + D+ L+N N + +SD+ I + HS DI+T +
Sbjct: 368 QQEKVAQIKEFCLSKXEDLELINRXSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTS 427
Query: 474 MAMVALLKLSSRFP 487
L + +SR P
Sbjct: 428 FFFPQLTQNNSREP 441
>pdb|3SO3|C Chain C, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 228
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 240 VETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILE 299
+E + +I +GG A ++ GRF +RDN+ + L M +++ +
Sbjct: 45 LEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM---------SSLRAEDTAVYY 95
Query: 300 CVKDLDASIRK 310
CVKDL + R+
Sbjct: 96 CVKDLGIAARR 106
>pdb|3EAK|A Chain A, Nbbcii10 Humanized (Fgla Mutant)
pdb|3EAK|B Chain B, Nbbcii10 Humanized (Fgla Mutant)
Length = 137
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 240 VETIMSIEDNGGLRVLAINILGRFLSNRDN--NIRYVALNML 279
+E + +I GGL A ++ GRF +RDN N Y+ +N L
Sbjct: 48 LEAVAAIASMGGLTYYADSVKGRFTISRDNSKNTLYLQMNSL 89
>pdb|4B5O|A Chain A, Crystal Structure Of Human Alpha Tubulin Acetyltransferase
Catalytic Domain
Length = 200
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 600 LLGVDVSPASVQPGTSQAPKAGTD----VLLDLLSIGSPPVQNNSTPSDILSSSQDNKSS 655
+L + P + +PGT+ + ++D L S QN S P S Q N+
Sbjct: 21 VLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHV 80
Query: 656 VAILDGLSPAPSGGAA 671
V IL S P+G A
Sbjct: 81 VYILKDSSARPAGKGA 96
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 410 VQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDI 469
V+ + E++V+ A+ G D+LVNN G+ + ++E D DV+ +K S+ +
Sbjct: 64 VKNPEDVENMVKTAMDAFGRI-DILVNNAGITRDTLMLKMSEKDWDDVLNTNLK--SAYL 120
Query: 470 TTKAMAMVALLKLSSR 485
TKA++ + L + S +
Sbjct: 121 CTKAVSKIMLKQKSGK 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,819,138
Number of Sequences: 62578
Number of extensions: 848490
Number of successful extensions: 2086
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2049
Number of HSP's gapped (non-prelim): 51
length of query: 812
length of database: 14,973,337
effective HSP length: 107
effective length of query: 705
effective length of database: 8,277,491
effective search space: 5835631155
effective search space used: 5835631155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)