Query 045023
Match_columns 812
No_of_seqs 320 out of 1486
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1062 Vesicle coat complex A 100.0 4E-161 9E-166 1343.9 65.2 794 1-812 1-864 (866)
2 KOG1077 Vesicle coat complex A 100.0 2E-100 5E-105 839.2 60.6 712 5-798 10-809 (938)
3 PTZ00429 beta-adaptin; Provisi 100.0 1.1E-73 2.4E-78 672.3 52.2 481 31-538 31-566 (746)
4 PF01602 Adaptin_N: Adaptin N 100.0 4E-70 8.7E-75 637.9 39.8 472 26-520 1-523 (526)
5 KOG1059 Vesicle coat complex A 100.0 1.1E-64 2.3E-69 560.5 38.1 490 7-520 13-576 (877)
6 KOG1060 Vesicle coat complex A 100.0 9.4E-55 2E-59 485.0 50.3 478 34-534 37-588 (968)
7 KOG1061 Vesicle coat complex A 100.0 1.4E-54 3.1E-59 489.5 31.9 483 31-540 12-548 (734)
8 KOG1058 Vesicle coat complex C 100.0 1.1E-41 2.3E-46 379.1 28.6 394 35-435 23-466 (948)
9 COG5096 Vesicle coat complex, 100.0 9.1E-41 2E-45 385.1 34.3 478 10-520 7-561 (757)
10 KOG1078 Vesicle coat complex C 100.0 1.5E-31 3.2E-36 300.9 36.4 466 26-520 19-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 2.5E-27 5.3E-32 257.7 35.7 459 37-520 27-554 (898)
12 PF02883 Alpha_adaptinC2: Adap 99.9 6.9E-22 1.5E-26 183.9 14.1 109 696-809 2-115 (115)
13 smart00809 Alpha_adaptinC2 Ada 99.8 1.1E-19 2.5E-24 165.9 14.8 104 699-809 1-104 (104)
14 KOG1086 Cytosolic sorting prot 99.7 4.3E-18 9.4E-23 180.5 7.7 115 694-810 467-587 (594)
15 PF01602 Adaptin_N: Adaptin N 98.9 8.6E-08 1.9E-12 112.5 23.7 339 34-399 81-446 (526)
16 PF14764 SPG48: AP-5 complex s 98.8 2.9E-06 6.3E-11 94.8 29.3 322 193-532 7-456 (459)
17 PTZ00429 beta-adaptin; Provisi 98.6 0.00012 2.5E-09 88.4 35.2 403 72-511 36-497 (746)
18 PRK09687 putative lyase; Provi 98.3 4.9E-05 1.1E-09 81.9 20.0 228 106-374 24-262 (280)
19 PLN03200 cellulose synthase-in 98.3 0.0033 7.1E-08 82.2 39.3 284 232-530 417-732 (2102)
20 KOG1062 Vesicle coat complex A 98.2 9.3E-05 2E-09 86.2 21.6 293 184-521 63-379 (866)
21 PRK13800 putative oxidoreducta 98.2 8.4E-05 1.8E-09 92.8 23.2 270 106-427 622-894 (897)
22 PLN03200 cellulose synthase-in 98.2 0.00078 1.7E-08 87.8 31.8 403 74-534 410-874 (2102)
23 PRK09687 putative lyase; Provi 98.2 0.00022 4.8E-09 76.8 22.0 237 231-516 35-277 (280)
24 PRK13800 putative oxidoreducta 98.0 0.00043 9.4E-09 86.5 22.5 271 34-352 623-895 (897)
25 PF12717 Cnd1: non-SMC mitotic 97.9 0.00035 7.5E-09 70.2 14.9 160 268-427 1-174 (178)
26 KOG1824 TATA-binding protein-i 97.5 0.0076 1.7E-07 71.7 20.3 274 57-351 759-1067(1233)
27 PF10508 Proteasom_PSMB: Prote 97.5 0.015 3.3E-07 68.0 23.2 270 238-519 60-364 (503)
28 KOG2023 Nuclear transport rece 97.5 0.06 1.3E-06 62.3 26.4 399 122-539 375-877 (885)
29 KOG1059 Vesicle coat complex A 97.4 0.0062 1.3E-07 70.7 18.4 225 274-518 128-362 (877)
30 KOG0212 Uncharacterized conser 97.4 0.17 3.8E-06 57.7 28.7 345 22-392 12-405 (675)
31 KOG0213 Splicing factor 3b, su 97.4 0.46 9.9E-06 55.9 32.5 412 6-517 607-1061(1172)
32 KOG1058 Vesicle coat complex C 97.4 0.012 2.6E-07 68.6 19.7 172 235-412 225-407 (948)
33 KOG2171 Karyopherin (importin) 97.4 0.61 1.3E-05 57.6 34.7 366 138-520 116-548 (1075)
34 KOG2023 Nuclear transport rece 97.3 0.041 8.8E-07 63.6 22.5 182 136-331 86-295 (885)
35 KOG1077 Vesicle coat complex A 97.3 0.003 6.5E-08 72.9 13.5 208 93-317 317-583 (938)
36 PF10508 Proteasom_PSMB: Prote 97.2 0.027 6E-07 65.9 21.4 227 290-529 75-327 (503)
37 KOG1020 Sister chromatid cohes 97.2 1.3 2.8E-05 56.2 39.8 103 68-176 816-922 (1692)
38 PF05804 KAP: Kinesin-associat 97.1 0.065 1.4E-06 64.5 22.8 269 112-400 297-613 (708)
39 KOG1078 Vesicle coat complex C 97.0 0.32 6.9E-06 57.6 26.4 121 9-134 79-201 (865)
40 PF12717 Cnd1: non-SMC mitotic 96.9 0.017 3.8E-07 57.9 13.3 90 250-339 20-113 (178)
41 KOG0212 Uncharacterized conser 96.8 0.35 7.6E-06 55.4 24.0 218 114-337 176-422 (675)
42 KOG0166 Karyopherin (importin) 96.7 0.49 1.1E-05 54.5 24.8 354 10-399 5-422 (514)
43 PF05804 KAP: Kinesin-associat 96.7 0.48 1E-05 57.2 25.8 314 189-522 303-650 (708)
44 KOG1241 Karyopherin (importin) 96.7 1.7 3.7E-05 51.6 28.6 416 43-501 228-732 (859)
45 cd00256 VATPase_H VATPase_H, r 96.5 1.3 2.7E-05 50.6 26.0 335 119-484 52-425 (429)
46 KOG1824 TATA-binding protein-i 96.4 0.27 5.9E-06 59.2 20.5 242 262-520 12-285 (1233)
47 KOG1061 Vesicle coat complex A 96.4 0.21 4.6E-06 59.1 19.2 343 51-404 63-460 (734)
48 KOG0213 Splicing factor 3b, su 96.3 1.2 2.6E-05 52.5 24.2 240 106-358 477-747 (1172)
49 cd00020 ARM Armadillo/beta-cat 96.2 0.026 5.6E-07 51.6 8.9 101 256-356 8-120 (120)
50 COG5181 HSH155 U2 snRNP splice 96.2 0.93 2E-05 52.4 22.2 258 233-514 580-863 (975)
51 KOG0166 Karyopherin (importin) 96.1 3.3 7.2E-05 47.9 26.9 286 38-338 72-405 (514)
52 COG5240 SEC21 Vesicle coat com 96.1 2.1 4.6E-05 49.3 24.3 146 228-376 199-352 (898)
53 COG1413 FOG: HEAT repeat [Ener 95.8 0.43 9.3E-06 52.7 17.8 84 68-160 43-126 (335)
54 KOG2259 Uncharacterized conser 95.8 5.7 0.00012 46.7 27.5 136 269-407 387-525 (823)
55 PF12719 Cnd3: Nuclear condens 95.8 1.2 2.5E-05 48.6 20.9 104 253-356 25-143 (298)
56 KOG2171 Karyopherin (importin) 95.8 7.9 0.00017 48.3 36.2 336 69-433 115-505 (1075)
57 KOG2259 Uncharacterized conser 95.5 0.61 1.3E-05 54.4 17.5 126 253-390 196-321 (823)
58 PF04826 Arm_2: Armadillo-like 95.4 0.27 6E-06 52.2 13.9 200 116-347 24-253 (254)
59 KOG1060 Vesicle coat complex A 95.3 0.84 1.8E-05 54.3 18.0 197 233-433 49-247 (968)
60 KOG1924 RhoA GTPase effector D 95.2 9.4 0.0002 45.6 29.5 24 260-283 239-262 (1102)
61 KOG1020 Sister chromatid cohes 95.2 1.9 4.2E-05 54.8 21.5 147 231-378 788-942 (1692)
62 KOG1241 Karyopherin (importin) 95.2 9.9 0.00021 45.5 27.0 205 108-325 59-292 (859)
63 COG5096 Vesicle coat complex, 95.0 0.54 1.2E-05 56.6 15.9 107 249-357 86-196 (757)
64 KOG4224 Armadillo repeat prote 94.9 2 4.2E-05 47.0 18.0 258 260-531 131-415 (550)
65 PF12348 CLASP_N: CLASP N term 94.8 0.38 8.3E-06 49.9 12.7 132 232-366 66-216 (228)
66 KOG1248 Uncharacterized conser 94.8 16 0.00034 46.0 27.7 127 188-320 628-766 (1176)
67 KOG1525 Sister chromatid cohes 94.6 8.4 0.00018 49.5 25.5 201 307-523 237-474 (1266)
68 PF10633 NPCBM_assoc: NPCBM-as 94.6 0.09 1.9E-06 45.1 6.1 73 719-793 5-78 (78)
69 PF14796 AP3B1_C: Clathrin-ada 94.1 0.96 2.1E-05 43.6 12.5 71 701-774 65-138 (145)
70 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.3 6.5E-06 43.9 8.2 65 253-318 25-93 (97)
71 TIGR02270 conserved hypothetic 93.9 12 0.00026 42.7 22.9 170 232-433 99-268 (410)
72 KOG1992 Nuclear export recepto 93.9 4.3 9.3E-05 48.8 19.4 225 102-344 453-716 (960)
73 PF13646 HEAT_2: HEAT repeats; 93.9 0.048 1.1E-06 47.3 3.0 47 110-160 4-51 (88)
74 KOG1242 Protein containing ada 93.3 20 0.00044 42.1 23.4 116 256-373 296-417 (569)
75 PF12719 Cnd3: Nuclear condens 93.1 1.4 3E-05 48.1 13.5 138 295-432 30-185 (298)
76 COG5215 KAP95 Karyopherin (imp 92.6 25 0.00054 41.0 28.2 423 43-502 232-733 (858)
77 COG5215 KAP95 Karyopherin (imp 92.6 25 0.00054 41.0 22.4 241 192-436 150-441 (858)
78 PF04826 Arm_2: Armadillo-like 92.5 2.5 5.4E-05 45.0 13.9 175 258-435 15-208 (254)
79 COG5218 YCG1 Chromosome conden 92.3 2.4 5.2E-05 49.0 13.8 84 236-319 67-159 (885)
80 PF05918 API5: Apoptosis inhib 92.2 4.3 9.3E-05 47.7 16.2 120 249-390 35-159 (556)
81 PF13646 HEAT_2: HEAT repeats; 92.1 0.4 8.7E-06 41.4 6.2 83 259-351 3-87 (88)
82 KOG2213 Apoptosis inhibitor 5/ 91.4 27 0.00059 38.9 21.2 68 252-338 40-107 (460)
83 PF12460 MMS19_C: RNAPII trans 91.2 30 0.00066 39.5 22.0 224 83-331 163-402 (415)
84 PF14500 MMS19_N: Dos2-interac 91.0 25 0.00053 37.7 21.2 243 258-530 2-260 (262)
85 KOG1240 Protein kinase contain 91.0 14 0.00029 46.6 19.1 104 257-360 619-729 (1431)
86 PF12460 MMS19_C: RNAPII trans 90.5 30 0.00064 39.6 21.0 210 297-519 4-257 (415)
87 KOG4413 26S proteasome regulat 90.1 24 0.00052 38.4 17.9 232 295-536 85-348 (524)
88 KOG0414 Chromosome condensatio 90.1 10 0.00022 47.6 17.1 256 96-397 162-432 (1251)
89 PF12348 CLASP_N: CLASP N term 89.9 2.2 4.8E-05 44.2 10.3 89 271-359 69-163 (228)
90 KOG1248 Uncharacterized conser 89.7 68 0.0015 40.7 33.2 314 192-520 494-855 (1176)
91 KOG0915 Uncharacterized conser 89.3 27 0.00058 45.1 20.1 80 72-151 822-910 (1702)
92 COG1413 FOG: HEAT repeat [Ener 89.3 8.9 0.00019 42.2 15.1 197 105-329 43-250 (335)
93 PF12830 Nipped-B_C: Sister ch 89.0 7 0.00015 39.5 12.9 66 252-320 5-73 (187)
94 cd00020 ARM Armadillo/beta-cat 89.0 1.6 3.5E-05 39.5 7.6 63 295-357 10-79 (120)
95 PF12530 DUF3730: Protein of u 88.6 34 0.00073 35.9 18.1 158 232-394 14-186 (234)
96 PF05918 API5: Apoptosis inhib 88.5 39 0.00084 40.0 19.8 149 239-395 42-205 (556)
97 TIGR02270 conserved hypothetic 88.4 19 0.00042 41.0 17.1 234 57-374 46-279 (410)
98 PF03224 V-ATPase_H_N: V-ATPas 88.2 11 0.00024 41.3 14.8 137 295-433 108-270 (312)
99 PF08167 RIX1: rRNA processing 86.8 21 0.00046 35.2 14.5 118 254-398 24-148 (165)
100 PF02854 MIF4G: MIF4G domain; 86.2 30 0.00065 34.5 15.8 61 311-371 2-62 (209)
101 KOG0168 Putative ubiquitin fus 86.1 22 0.00048 43.2 16.0 177 297-486 172-366 (1051)
102 PF10363 DUF2435: Protein of u 85.9 3.7 8.1E-05 36.5 7.6 63 297-359 8-75 (92)
103 COG5218 YCG1 Chromosome conden 85.7 82 0.0018 37.1 20.0 127 236-377 47-182 (885)
104 PF12755 Vac14_Fab1_bd: Vacuol 85.3 3.1 6.7E-05 37.4 6.9 52 270-321 1-56 (97)
105 KOG1242 Protein containing ada 84.1 97 0.0021 36.6 20.3 216 257-486 98-326 (569)
106 KOG1293 Proteins containing ar 83.0 86 0.0019 37.4 18.7 88 235-322 439-534 (678)
107 KOG4224 Armadillo repeat prote 82.6 56 0.0012 36.2 15.9 30 256-285 334-364 (550)
108 smart00638 LPD_N Lipoprotein N 82.6 1.2E+02 0.0025 36.3 22.8 36 323-358 389-428 (574)
109 KOG2160 Armadillo/beta-catenin 81.7 51 0.0011 36.4 15.6 143 335-487 132-285 (342)
110 KOG0414 Chromosome condensatio 81.5 12 0.00026 46.9 11.8 83 257-339 1000-1083(1251)
111 PF13513 HEAT_EZ: HEAT-like re 80.2 1.5 3.3E-05 34.5 2.6 42 119-160 1-48 (55)
112 KOG4653 Uncharacterized conser 80.2 86 0.0019 38.6 17.7 95 264-358 856-969 (982)
113 PF14664 RICTOR_N: Rapamycin-i 79.8 35 0.00075 38.5 14.1 138 263-402 33-184 (371)
114 PF01347 Vitellogenin_N: Lipop 78.9 60 0.0013 39.1 17.0 163 323-507 427-608 (618)
115 COG5181 HSH155 U2 snRNP splice 78.3 1.5E+02 0.0033 35.2 29.8 455 6-520 412-911 (975)
116 KOG2956 CLIP-associating prote 78.1 1.1E+02 0.0024 35.1 17.0 124 268-393 300-435 (516)
117 smart00543 MIF4G Middle domain 77.9 63 0.0014 32.1 14.4 39 320-359 11-49 (200)
118 COG5064 SRP1 Karyopherin (impo 77.1 30 0.00066 37.8 11.8 168 234-401 216-409 (526)
119 KOG2025 Chromosome condensatio 77.1 25 0.00055 42.0 12.0 104 248-351 78-188 (892)
120 PF11698 V-ATPase_H_C: V-ATPas 75.5 4.5 9.7E-05 37.7 4.5 64 257-320 45-114 (119)
121 PF05004 IFRD: Interferon-rela 74.9 1.4E+02 0.003 32.8 18.2 95 32-156 43-145 (309)
122 KOG2025 Chromosome condensatio 73.9 2.1E+02 0.0046 34.6 20.4 113 288-403 81-199 (892)
123 KOG1525 Sister chromatid cohes 73.2 3E+02 0.0066 36.1 26.6 225 269-512 114-357 (1266)
124 KOG1240 Protein kinase contain 72.9 82 0.0018 40.2 15.3 90 267-356 435-537 (1431)
125 PF14631 FancD2: Fanconi anaem 72.4 3.4E+02 0.0074 36.3 25.7 102 233-337 206-307 (1426)
126 KOG0946 ER-Golgi vesicle-tethe 72.0 23 0.0005 42.7 10.2 110 257-397 124-245 (970)
127 KOG2140 Uncharacterized conser 71.5 51 0.0011 38.2 12.2 151 313-479 168-342 (739)
128 PF05536 Neurochondrin: Neuroc 71.3 1.7E+02 0.0037 34.8 17.6 220 258-485 8-262 (543)
129 PF12765 Cohesin_HEAT: HEAT re 70.8 2.8 6.2E-05 31.5 1.7 39 278-316 2-42 (42)
130 PF13513 HEAT_EZ: HEAT-like re 70.4 6.1 0.00013 31.0 3.7 48 271-318 3-54 (55)
131 cd03561 VHS VHS domain family; 69.9 22 0.00047 33.8 8.1 56 232-290 17-72 (133)
132 KOG2137 Protein kinase [Signal 69.7 2.4E+02 0.0052 34.2 17.8 224 267-510 285-526 (700)
133 COG5064 SRP1 Karyopherin (impo 69.0 1.9E+02 0.0041 32.0 15.3 126 35-160 202-347 (526)
134 cd03568 VHS_STAM VHS domain fa 68.8 68 0.0015 31.0 11.2 57 232-291 17-73 (144)
135 PLN03076 ARF guanine nucleotid 68.4 2.9E+02 0.0062 37.7 20.0 33 301-333 1356-1395(1780)
136 COG5098 Chromosome condensatio 67.5 47 0.001 39.7 11.2 132 267-398 908-1042(1128)
137 cd03567 VHS_GGA VHS domain fam 66.8 53 0.0012 31.6 10.0 57 231-290 17-73 (139)
138 PF10363 DUF2435: Protein of u 64.9 52 0.0011 29.2 8.8 71 327-397 3-76 (92)
139 KOG0168 Putative ubiquitin fus 64.7 2.5E+02 0.0054 34.8 16.6 172 187-363 179-371 (1051)
140 KOG2149 Uncharacterized conser 64.6 50 0.0011 37.1 10.4 99 262-361 65-175 (393)
141 PF02985 HEAT: HEAT repeat; I 64.5 7.8 0.00017 26.8 2.8 27 107-133 2-28 (31)
142 PF01603 B56: Protein phosphat 64.3 2.2E+02 0.0047 32.6 16.1 175 327-517 133-322 (409)
143 PF14676 FANCI_S2: FANCI solen 63.9 62 0.0013 31.9 10.0 110 387-513 41-153 (158)
144 KOG2759 Vacuolar H+-ATPase V1 62.6 2.8E+02 0.006 31.6 29.6 222 230-484 211-438 (442)
145 COG5231 VMA13 Vacuolar H+-ATPa 62.5 1.2E+02 0.0026 33.2 12.3 164 267-436 205-390 (432)
146 PLN03076 ARF guanine nucleotid 61.6 2.4E+02 0.0052 38.4 17.5 126 233-358 1151-1301(1780)
147 KOG1967 DNA repair/transcripti 61.3 46 0.00099 41.1 10.0 185 117-315 809-1018(1030)
148 PF14664 RICTOR_N: Rapamycin-i 61.3 2.2E+02 0.0048 32.1 15.2 89 240-328 92-183 (371)
149 PF00790 VHS: VHS domain; Int 61.1 22 0.00048 34.1 6.3 78 83-160 20-109 (140)
150 PF03224 V-ATPase_H_N: V-ATPas 60.6 2.1E+02 0.0045 31.3 14.7 210 123-347 58-305 (312)
151 KOG2057 Predicted equilibrativ 60.2 17 0.00037 39.1 5.6 61 572-634 323-385 (499)
152 PF11707 Npa1: Ribosome 60S bi 59.9 1.7E+02 0.0036 32.4 13.8 128 288-430 52-185 (330)
153 PF10521 DUF2454: Protein of u 59.8 68 0.0015 34.6 10.5 65 255-319 119-201 (282)
154 KOG1991 Nuclear transport rece 59.8 3.7E+02 0.0081 33.8 17.2 153 254-410 413-590 (1010)
155 cd00197 VHS_ENTH_ANTH VHS, ENT 58.9 28 0.00062 31.9 6.4 84 234-320 19-114 (115)
156 KOG4535 HEAT and armadillo rep 58.7 31 0.00068 39.4 7.6 145 80-286 24-181 (728)
157 PF03378 CAS_CSE1: CAS/CSE pro 58.2 3.5E+02 0.0075 31.3 17.4 192 162-375 23-230 (435)
158 KOG1820 Microtubule-associated 58.0 1.4E+02 0.0031 37.1 13.8 94 266-359 306-403 (815)
159 KOG2137 Protein kinase [Signal 57.8 3.4E+02 0.0075 32.9 16.2 62 259-320 353-417 (700)
160 PF14500 MMS19_N: Dos2-interac 55.8 2.8E+02 0.0062 29.6 19.1 144 267-411 94-256 (262)
161 PHA02939 hypothetical protein; 55.6 96 0.0021 28.6 8.7 99 320-431 13-120 (144)
162 KOG4199 Uncharacterized conser 54.2 3.5E+02 0.0075 30.1 17.7 199 191-427 185-398 (461)
163 PF01347 Vitellogenin_N: Lipop 53.7 1.4E+02 0.003 36.0 12.9 200 305-533 377-601 (618)
164 smart00638 LPD_N Lipoprotein N 52.3 4.7E+02 0.01 31.1 22.2 59 74-132 363-424 (574)
165 cd03569 VHS_Hrs_Vps27p VHS dom 51.9 49 0.0011 31.9 6.9 52 232-286 21-72 (142)
166 KOG0413 Uncharacterized conser 51.6 55 0.0012 40.6 8.4 90 281-371 995-1090(1529)
167 PF01603 B56: Protein phosphat 51.2 2.7E+02 0.0058 31.8 14.0 139 235-373 109-264 (409)
168 PF11698 V-ATPase_H_C: V-ATPas 50.7 30 0.00064 32.4 5.0 95 376-484 21-115 (119)
169 PF08506 Cse1: Cse1; InterPro 50.3 41 0.00088 37.9 7.0 151 6-158 181-364 (370)
170 PF02985 HEAT: HEAT repeat; I 50.2 37 0.0008 23.3 4.3 28 329-356 2-29 (31)
171 PF00790 VHS: VHS domain; Int 49.4 80 0.0017 30.2 8.0 39 254-292 41-79 (140)
172 PF10521 DUF2454: Protein of u 48.7 1.4E+02 0.003 32.3 10.6 128 294-431 121-274 (282)
173 cd03569 VHS_Hrs_Vps27p VHS dom 48.4 40 0.00088 32.5 5.8 69 92-160 28-105 (142)
174 cd03561 VHS VHS domain family; 48.1 50 0.0011 31.3 6.3 46 87-132 19-64 (133)
175 cd00256 VATPase_H VATPase_H, r 47.7 5E+02 0.011 30.0 15.2 55 269-323 68-132 (429)
176 KOG1943 Beta-tubulin folding c 47.3 7.3E+02 0.016 31.8 20.7 218 134-360 335-577 (1133)
177 KOG0946 ER-Golgi vesicle-tethe 46.4 6.6E+02 0.014 31.1 29.1 112 361-486 440-559 (970)
178 PF06371 Drf_GBD: Diaphanous G 46.1 28 0.00061 34.6 4.6 26 295-320 161-186 (187)
179 KOG3687 Tuberin - Rap/ran-GTPa 45.3 5.5E+02 0.012 32.5 15.2 104 257-361 69-200 (1697)
180 PF12397 U3snoRNP10: U3 small 44.2 1.4E+02 0.003 27.6 8.6 97 256-359 7-108 (121)
181 smart00288 VHS Domain present 44.1 99 0.0021 29.3 7.7 74 87-160 19-102 (133)
182 KOG2160 Armadillo/beta-catenin 43.9 5E+02 0.011 28.9 14.4 101 258-358 169-284 (342)
183 PF10274 ParcG: Parkin co-regu 43.9 91 0.002 31.5 7.6 84 67-150 37-127 (183)
184 PF12530 DUF3730: Protein of u 43.8 4E+02 0.0087 27.8 16.5 164 185-355 10-184 (234)
185 PF08569 Mo25: Mo25-like; Int 43.6 2.6E+02 0.0056 31.1 11.9 110 260-398 169-287 (335)
186 cd03568 VHS_STAM VHS domain fa 43.2 56 0.0012 31.6 5.9 71 90-160 22-101 (144)
187 PF04118 Dopey_N: Dopey, N-ter 43.2 1.4E+02 0.0031 32.6 9.7 112 196-318 140-251 (307)
188 cd03572 ENTH_epsin_related ENT 42.9 62 0.0013 30.4 5.8 41 282-322 28-68 (122)
189 KOG2199 Signal transducing ada 42.9 48 0.001 37.0 5.8 82 79-160 19-109 (462)
190 KOG1243 Protein kinase [Genera 42.4 1.2E+02 0.0026 36.5 9.4 87 252-338 327-415 (690)
191 COG5098 Chromosome condensatio 40.9 7.6E+02 0.016 30.2 16.7 154 216-373 895-1054(1128)
192 KOG2085 Serine/threonine prote 40.6 86 0.0019 35.4 7.3 125 345-518 237-367 (457)
193 KOG3723 PH domain protein Melt 40.2 4E+02 0.0086 31.5 12.6 44 262-305 206-249 (851)
194 PF12830 Nipped-B_C: Sister ch 40.0 4E+02 0.0087 26.7 16.1 71 289-359 5-77 (187)
195 KOG4653 Uncharacterized conser 39.5 1.5E+02 0.0032 36.6 9.5 73 265-338 737-814 (982)
196 cd03567 VHS_GGA VHS domain fam 39.4 1.1E+02 0.0024 29.4 7.2 71 90-160 23-107 (139)
197 cd08050 TAF6 TATA Binding Prot 39.3 5.6E+02 0.012 28.5 13.8 139 291-432 177-340 (343)
198 KOG2085 Serine/threonine prote 39.2 6.4E+02 0.014 28.8 14.6 54 192-245 175-248 (457)
199 PF11841 DUF3361: Domain of un 39.0 3.8E+02 0.0082 26.5 10.8 86 270-357 32-132 (160)
200 KOG1087 Cytosolic sorting prot 38.5 82 0.0018 36.6 7.1 63 256-318 39-109 (470)
201 KOG2274 Predicted importin 9 [ 38.5 9.1E+02 0.02 30.4 26.8 61 100-160 444-511 (1005)
202 PF10165 Ric8: Guanine nucleot 38.5 6.8E+02 0.015 28.9 17.7 57 231-287 44-111 (446)
203 PF11707 Npa1: Ribosome 60S bi 38.4 5.8E+02 0.013 28.1 20.7 150 194-353 4-184 (330)
204 COG5231 VMA13 Vacuolar H+-ATPa 37.9 41 0.00089 36.7 4.2 67 256-322 357-429 (432)
205 PF08623 TIP120: TATA-binding 37.4 65 0.0014 32.1 5.4 61 236-298 47-108 (169)
206 KOG1949 Uncharacterized conser 36.8 3.4E+02 0.0074 33.0 11.6 186 103-324 172-373 (1005)
207 smart00340 HALZ homeobox assoc 35.8 25 0.00054 26.3 1.6 25 18-42 12-36 (44)
208 KOG0413 Uncharacterized conser 35.5 1E+03 0.023 30.3 23.6 135 252-397 613-758 (1529)
209 smart00288 VHS Domain present 34.1 2E+02 0.0043 27.3 8.0 35 254-288 36-70 (133)
210 KOG0368 Acetyl-CoA carboxylase 33.2 1.4E+03 0.029 30.9 19.8 155 267-435 878-1050(2196)
211 PF04388 Hamartin: Hamartin pr 32.9 8.2E+02 0.018 30.0 14.8 140 327-488 4-144 (668)
212 PF10274 ParcG: Parkin co-regu 32.2 2.4E+02 0.0052 28.5 8.5 78 256-338 81-164 (183)
213 KOG0211 Protein phosphatase 2A 32.0 1.1E+03 0.024 29.4 24.1 127 379-520 533-663 (759)
214 KOG2011 Sister chromatid cohes 31.9 5.1E+02 0.011 33.2 12.8 58 265-322 297-356 (1048)
215 COG5116 RPN2 26S proteasome re 31.5 7.8E+02 0.017 29.3 13.1 148 256-411 517-672 (926)
216 PF14676 FANCI_S2: FANCI solen 30.9 5.2E+02 0.011 25.4 11.4 80 270-351 72-156 (158)
217 KOG1924 RhoA GTPase effector D 30.0 1.6E+02 0.0034 35.9 7.6 15 506-520 470-484 (1102)
218 COG5537 IRR1 Cohesin [Cell div 30.0 8.6E+02 0.019 29.2 13.3 63 256-319 315-384 (740)
219 PF12231 Rif1_N: Rap1-interact 29.7 8.4E+02 0.018 27.4 27.4 189 267-485 146-353 (372)
220 cd03565 VHS_Tom1 VHS domain fa 29.7 3.5E+02 0.0075 26.0 8.9 58 231-291 17-75 (141)
221 PF12074 DUF3554: Domain of un 29.5 7.9E+02 0.017 27.0 19.5 264 83-396 1-330 (339)
222 PF08767 CRM1_C: CRM1 C termin 28.8 8.1E+02 0.018 26.9 18.6 75 236-321 118-194 (319)
223 KOG1820 Microtubule-associated 28.2 3.7E+02 0.0079 33.7 10.7 130 229-360 305-447 (815)
224 COG1470 Predicted membrane pro 27.6 4E+02 0.0087 30.8 9.9 57 720-778 398-454 (513)
225 KOG2286 Exocyst complex subuni 27.2 6.2E+02 0.014 30.9 12.1 64 351-415 573-636 (667)
226 PF04388 Hamartin: Hamartin pr 26.7 7.1E+02 0.015 30.5 12.9 62 257-320 72-139 (668)
227 PF05327 RRN3: RNA polymerase 25.5 5.1E+02 0.011 31.0 11.3 43 468-510 177-219 (563)
228 KOG1991 Nuclear transport rece 25.1 1.5E+03 0.033 28.8 29.6 53 233-286 106-158 (1010)
229 KOG1293 Proteins containing ar 24.9 1.3E+03 0.028 28.0 14.2 173 256-428 420-623 (678)
230 KOG2062 26S proteasome regulat 24.8 2E+02 0.0043 35.0 7.3 119 35-160 487-609 (929)
231 cd00238 ERp29c ERp29 and ERp38 24.7 4.8E+02 0.01 23.2 8.2 58 335-394 11-72 (93)
232 KOG2753 Uncharacterized conser 24.7 9.9E+02 0.021 26.5 15.8 176 325-515 14-210 (378)
233 COG5116 RPN2 26S proteasome re 24.5 4.5E+02 0.0098 31.2 9.8 81 76-159 524-605 (926)
234 KOG1967 DNA repair/transcripti 24.4 4.1E+02 0.0089 33.3 9.9 104 257-360 869-986 (1030)
235 PF00514 Arm: Armadillo/beta-c 24.3 1.4E+02 0.0031 21.6 4.1 27 329-355 14-40 (41)
236 PF01345 DUF11: Domain of unkn 24.2 2.7E+02 0.0058 23.2 6.4 33 719-751 41-73 (76)
237 KOG2933 Uncharacterized conser 24.2 1.6E+02 0.0034 32.3 5.8 130 39-169 95-235 (334)
238 KOG2062 26S proteasome regulat 24.1 1.4E+03 0.031 28.2 17.5 160 297-476 524-688 (929)
239 PF03130 HEAT_PBS: PBS lyase H 24.1 1.5E+02 0.0032 19.7 3.7 25 121-145 1-25 (27)
240 PF13981 SopA: SopA-like centr 24.0 2.1E+02 0.0046 27.4 6.2 61 468-528 66-130 (135)
241 PF08713 DNA_alkylation: DNA a 23.8 2.4E+02 0.0052 28.5 7.2 20 262-281 58-77 (213)
242 KOG2141 Protein involved in hi 23.7 1.3E+03 0.028 28.4 13.4 42 489-534 483-525 (822)
243 PF09324 DUF1981: Domain of un 23.6 3.8E+02 0.0083 23.3 7.3 67 451-518 15-85 (86)
244 PF07718 Coatamer_beta_C: Coat 23.5 3.6E+02 0.0077 26.0 7.5 57 719-776 69-125 (140)
245 PF12726 SEN1_N: SEN1 N termin 23.3 5.2E+02 0.011 31.9 11.1 97 276-374 502-604 (727)
246 PRK07003 DNA polymerase III su 23.2 3.5E+02 0.0076 33.6 9.1 94 307-412 165-258 (830)
247 PF06371 Drf_GBD: Diaphanous G 22.7 3.1E+02 0.0066 27.0 7.6 69 214-283 112-186 (187)
248 PF12054 DUF3535: Domain of un 22.6 1.2E+03 0.026 26.9 13.9 48 472-519 291-340 (441)
249 PF11841 DUF3361: Domain of un 22.4 4.5E+02 0.0097 26.0 8.2 67 254-320 57-130 (160)
250 PF06685 DUF1186: Protein of u 22.2 9.6E+02 0.021 25.5 14.0 177 294-498 3-195 (249)
251 PF15573 Imm27: Immunity prote 21.9 9.2E+02 0.02 25.2 10.7 119 232-357 60-198 (259)
252 PF07539 DRIM: Down-regulated 21.8 3.3E+02 0.0072 26.2 7.1 43 258-303 20-62 (141)
253 PF08623 TIP120: TATA-binding 21.1 3.9E+02 0.0084 26.6 7.6 26 295-321 69-94 (169)
254 KOG2038 CAATT-binding transcri 21.0 4.8E+02 0.01 32.1 9.3 165 348-533 214-383 (988)
255 PF08167 RIX1: rRNA processing 20.9 3.1E+02 0.0067 27.0 7.0 30 269-298 128-157 (165)
256 PF00514 Arm: Armadillo/beta-c 20.6 1.4E+02 0.0031 21.6 3.4 28 256-283 13-40 (41)
257 KOG2081 Nuclear transport regu 20.3 1.3E+03 0.028 27.4 12.4 95 342-438 367-463 (559)
No 1
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-161 Score=1343.92 Aligned_cols=794 Identities=57% Similarity=0.874 Sum_probs=682.3
Q ss_pred CCCCCCcchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhc
Q 045023 1 MNPFSSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINE--NDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIA 78 (812)
Q Consensus 1 ~~~~m~~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~--~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~ 78 (812)
+++++.+++|++|||+||+|||+||||++|+||||.||+.|++ .+..+|+++|+||+|+||+|||+||||+||+||++
T Consensus 1 ~~~~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLia 80 (866)
T KOG1062|consen 1 GNMFAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIA 80 (866)
T ss_pred CCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhc
Confidence 5788888999999999999999999999999999999999999 58899999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceec
Q 045023 79 SAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRK 158 (812)
Q Consensus 79 s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRK 158 (812)
|++|.+||+|||++|+++||++|+++|+||+++|||+|+|.|++|+|||++|+|+++||||+|+|+|+++++|++|||||
T Consensus 81 s~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irK 160 (866)
T KOG1062|consen 81 SDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRK 160 (866)
T ss_pred CCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--------------------------------------------------------CCchhHHHHHHHHhcCCCCCcc
Q 045023 159 KP--------------------------------------------------------KCLDGLVKTLRDVVNSPYAPEY 182 (812)
Q Consensus 159 kA--------------------------------------------------------~~v~~lv~~L~~L~~~~~~pe~ 182 (812)
|| ++++.+|.+|+++..++|+|||
T Consensus 161 KA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspey 240 (866)
T KOG1062|consen 161 KAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEY 240 (866)
T ss_pred HHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 99 4788999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 045023 183 DIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGR 262 (812)
Q Consensus 183 ~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~ 262 (812)
||+|++|||+||+|||+|+.|+++|++.+|.|+|+|+++++|||++||+||||+||||+||+.|.++++||++|+|+|||
T Consensus 241 dv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 241 DVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGK 320 (866)
T ss_pred CccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHH
Q 045023 263 FLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQE 342 (812)
Q Consensus 263 fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~ 342 (812)
||.++|+|+|||||++|.++++.+|++|||||.+|++||+|+|.+||||||||+|+|+|++|++.|++||++||..+|++
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDED 400 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhhc----cchH
Q 045023 343 FKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA-SDLHGYTVRALYRAVQTS----IEQE 417 (812)
Q Consensus 343 ~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~-p~l~~~~v~~L~~~l~~~----~~~~ 417 (812)
||.+++.+|+.+||||+|+.+||||+++++++.+|+||.+++|+.++++|.+. +++|+|++.+||..+..+ ++++
T Consensus 401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e 480 (866)
T KOG1062|consen 401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQE 480 (866)
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999998 899999999999999865 7889
Q ss_pred HHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHH
Q 045023 418 SLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDII 497 (812)
Q Consensus 418 ~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll 497 (812)
.++++++||||||||++.++.. +++|..+||+++++++++++.++..+..||.|+|+|++||++|++.+.++|++++
T Consensus 481 ~l~qVa~W~IGEYGdlll~~~~---~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI 557 (866)
T KOG1062|consen 481 PLLQVASWCIGEYGDLLLDGAN---EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLI 557 (866)
T ss_pred hHHHHHHHHhhhhhHHhhcCcc---ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999999999998764 2688999999999999999999988999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhccCHHHHHHhhhcCCCCcccccccccCCCCCCccccCCCCccCCCCCCCCCCCCCccc
Q 045023 498 VQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFSGRRAGSLPATVSTSSGTSLNLPNGVAKPAAAPLVD 577 (812)
Q Consensus 498 ~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~mP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 577 (812)
..|+.|.|.|+||||+||..||.++.++|+.+|++||.+++.++.....+..+.... .+..++. +.+. ........|
T Consensus 558 ~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~~g~~~~~i~-~~~~p~~-~~~~-~~~~~~l~d 634 (866)
T KOG1062|consen 558 SSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARLDGNGPAAIE-QGAEPYK-SAGE-SLGVAELSD 634 (866)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccchHHHHH-hccCCCc-cccc-ccccchhhh
Confidence 999999999999999999999999999999999999999987654332221111100 0000000 0111 111112234
Q ss_pred ccccCCCCCCCCCCCCcchhhhhhCCCCCCCCCCCCCCCCCCCChhhhhhhhCCCCCCCCCCCCCccccccc------cC
Q 045023 578 LLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSSS------QD 651 (812)
Q Consensus 578 lldl~~~~~~~~~~~~~d~l~dl~g~~~~~~~~~~~~~~~~~~~~~~l~dl~~~~~~~~~~~~~~~~~~~~~------~~ 651 (812)
++++.+...| ..+...+.|++|...++|..++++.+.++...+.+.|++|...++..+.....+..+.+ +.
T Consensus 635 ~~~~~~~~~~---~s~~~~l~~~L~~~~~~p~~~~~~~p~p~~~~~~~~~I~~~~~s~~~~~~~~~~L~~~~~~~~~~s~ 711 (866)
T KOG1062|consen 635 LLPLDSKETP---TSSLNDLEDLLDKDESSPGASNGAAPVPSEGGNVLQDILGDVLSQSKNSKEKLDLAGSLFVGSSSSA 711 (866)
T ss_pred ccCCCCCcCC---cccccchhccCCCccCCCCCCCCCCCCCCCccchhhhhhhccccccccchhccccccccccccCCCC
Confidence 4444433322 33356677888876555544433322222334556666664222211111111111110 00
Q ss_pred CcchhhhccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCC
Q 045023 652 NKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLS 731 (812)
Q Consensus 652 ~p~~~~~~~~~~~~~~~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~ 731 (812)
+|+. .+ ...|.++..+++++++...|.......+..|++++|+++++.+++.+.+.+.++..++++++|+|.+
T Consensus 712 a~~~----~s---~~sp~~s~~~s~l~~l~p~p~~~~~~~~~~~~~~~~dkssl~~~~~~~k~~~n~~~t~i~~~~tn~s 784 (866)
T KOG1062|consen 712 APPA----PS---GTSPSSSQPFSLLSGLSPDPSKNTLAATDYPSIKAYDKSSLLVELSFTKGPSNKKTTVITLTFTNLS 784 (866)
T ss_pred CCCC----cC---CCCCcCCCcchhhcccCCCccccccccccCCcceeeecccceeeeeeccCCCCCceeEEEeeccCCC
Confidence 0110 00 0011122356777777643221111222467899999999999999999888888999999999999
Q ss_pred Ccc-ccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCC
Q 045023 732 PNV-YTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPR 810 (812)
Q Consensus 732 ~~~-i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~ 810 (812)
+.+ +++|.||+||||+++++++|+||+.+++.+.++++|.|+|.|+++. +++||.|++|..+|+.+.|+++|++||.
T Consensus 785 ~~~~l~~F~~~aAv~ks~ql~l~~~ss~~~~~~~~g~~tq~~rv~n~~~~--~l~~r~rl~~~~~G~s~~e~~ev~~~p~ 862 (866)
T KOG1062|consen 785 PNTDLTDFHFQAAVPKSLQLQLQPASSNSLPASGGGHITQVLRVLNPQKS--TLKLRLRLSYSLNGSSVLENFEVDNLPR 862 (866)
T ss_pred CCcchhhhcccccchHHHhhccCCccccccCcCCCCcceeEEEEecCCCc--eEEEEEEEEeecCCchHHhhhhhccCcc
Confidence 987 9999999999999999999999999999999899999999999864 9999999999999999999999999997
Q ss_pred CC
Q 045023 811 DL 812 (812)
Q Consensus 811 ~~ 812 (812)
++
T Consensus 863 ~~ 864 (866)
T KOG1062|consen 863 QL 864 (866)
T ss_pred cc
Confidence 53
No 2
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-100 Score=839.23 Aligned_cols=712 Identities=27% Similarity=0.476 Sum_probs=560.8
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCC
Q 045023 5 SSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAG 81 (812)
Q Consensus 5 m~~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~~---~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~ 81 (812)
|+| |+-||.|+|+|+++++|+++|++|+|+||.+|+.. +.|+|++|++||+|++|+|||++||+||.++|++|+.
T Consensus 10 mrG--L~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~k 87 (938)
T KOG1077|consen 10 MRG--LAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNK 87 (938)
T ss_pred chh--HHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCC
Confidence 788 99999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccC--CCcceecc
Q 045023 82 FPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQF--RDPNIRKK 159 (812)
Q Consensus 82 ~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~--~~pyVRKk 159 (812)
|++|.+|||+++++++++.|++-|++|+++|||.|.|+..++|||.|+|+|++.||++.+.++|-|+|.+ +.+|||||
T Consensus 88 ysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqk 167 (938)
T KOG1077|consen 88 YSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQK 167 (938)
T ss_pred ccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 45999999
Q ss_pred C-------------------------------------------------------CCchhHHHHHHHHhcC-CCC-Ccc
Q 045023 160 P-------------------------------------------------------KCLDGLVKTLRDVVNS-PYA-PEY 182 (812)
Q Consensus 160 A-------------------------------------------------------~~v~~lv~~L~~L~~~-~~~-pe~ 182 (812)
| -|++..+.+|..++.. +.+ -||
T Consensus 168 aALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 168 AALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred HHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhc
Confidence 9 1344444555555443 344 579
Q ss_pred ccccCCChhHHHHHHHHHHhcCC-CCchhhhHHHHHHHHHhhccc--------cCCCCcchHHHHHHHHHHhcCCChhHH
Q 045023 183 DIAGITDPFLHIRLLKLLHVLGQ-GDADASDCMNDILAQVATKTE--------SNKNAGNAILYECVETIMSIEDNGGLR 253 (812)
Q Consensus 183 ~~~~~~dpwlqv~lL~lL~~l~~-~~~~~~~~l~diL~~v~~~~~--------~~kn~~~aVl~e~v~~i~~i~~~~~L~ 253 (812)
.|+++++||+|++++|+|..|.+ .|+.....++++|..++..+. +.+|+.|||+||+++.++++++++++.
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll 327 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL 327 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999964 345556677888888877654 234789999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC--HHHHHHhHhhhccccc-ccCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVD--AQAVQRHRATILECVK-DLDASIRKRALELVYLLVNESNVKPLTK 330 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~--p~~v~~h~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~~Iv~ 330 (812)
..|++.||.||++++.|+||+||+++.+++... .++|+.|++.|+..|+ +.|.|||+||+||||+||+.+|++.||.
T Consensus 328 ~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~ 407 (938)
T KOG1077|consen 328 SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVA 407 (938)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHH
Confidence 999999999999999999999999999999876 4789999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAV 410 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l 410 (812)
||+.|+..+|..+|++++.++++++|||++|.+||||++++++..+|+|+++|+|.++++++.+++++|.|+.++++++|
T Consensus 408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~L 487 (938)
T KOG1077|consen 408 ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYL 487 (938)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCCh
Q 045023 411 QTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS 490 (812)
Q Consensus 411 ~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~ 490 (812)
+....++.++++..|++||||+++.+.+.. ++.....+|..- .|..++.||..+||+.+||+..+|+..
T Consensus 488 q~~a~hE~mVKvggyiLGEfg~LIa~~prs---------s~~~qFsllh~K--~~~~s~~tr~lLLtTyiKl~nl~PEi~ 556 (938)
T KOG1077|consen 488 QKPACHENMVKVGGYILGEFGNLIADDPRS---------SPAVQFSLLHEK--LHLCSPVTRALLLTTYIKLINLFPEIK 556 (938)
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhcCCCCC---------ChHHHHHHHHHH--hccCChhHHHHHHHHHHHHHhhChhhh
Confidence 988889999999999999999999875542 233445555432 245689999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhccC-HHHHHHhhhcCCCCccccccc-ccCCCCCCccccCCCCccCCCCCCC
Q 045023 491 ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKH-QNIRSTLVERMPVLDEATFSG-RRAGSLPATVSTSSGTSLNLPNGVA 568 (812)
Q Consensus 491 ~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~-~~~~~~ll~~mP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (812)
..|.++|+.+.+..|.|+||||+||++|.... .++-..+|++||||.+..... .......++
T Consensus 557 ~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~---------------- 620 (938)
T KOG1077|consen 557 SNVQKVFQLYSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPS---------------- 620 (938)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCc----------------
Confidence 99999999999999999999999999999633 478899999999998764110 000000000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCcchhhhhhCCCCCCCCCCCCCCCCCCCChhhhhhhhCCCCCCCCCCCCCcccccc
Q 045023 569 KPAAAPLVDLLDLSSDDAPVPSSSGNDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSPPVQNNSTPSDILSS 648 (812)
Q Consensus 569 ~~~~~~~~dlldl~~~~~~~~~~~~~d~l~dl~g~~~~~~~~~~~~~~~~~~~~~~l~dl~~~~~~~~~~~~~~~~~~~~ 648 (812)
.. .|.....|++..+ ..|...+++| ++++..+++..+.+.+++
T Consensus 621 ------~~---~l~~~~~~~~~~~-------------~~~~~~~~tp--------~~v~~~s~st~~~~v~~~------- 663 (938)
T KOG1077|consen 621 ------AI---SLRAGAGPKTLAN-------------PPPVASEPTP--------SKVSKRSNSTDPLSVPSP------- 663 (938)
T ss_pred ------hh---ccccccCCcccCC-------------CCcccCCCCc--------ccccCCCCCCCcccCCCC-------
Confidence 00 0100000100000 0000001111 111111111111000000
Q ss_pred ccCCcchhhhccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCC---------CCceEEEecCCeEEEEEeecCCCCCC
Q 045023 649 SQDNKSSVAILDGLSPAPSGGAASMIDLLDGFVPNSPKPEDNGPA---------YPSIVAFESSSLRLTFNFSKPPGNPQ 719 (812)
Q Consensus 649 ~~~~p~~~~~~~~~~~~~~~~~~~~~dll~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~~~~~~~ 719 (812)
|.++...++. ++...+.|.++|+.+..+..+.|+.. ...-..|++.-++|....+- +.+
T Consensus 664 ----p~~n~t~~~~-----~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed~~iQIgvk~e~-r~~-- 731 (938)
T KOG1077|consen 664 ----PPPNNTISSV-----NSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFEDSLIQIGVKSET-RNN-- 731 (938)
T ss_pred ----CCCCCCccCC-----CCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeeccceeEEEeeec-cCc--
Confidence 0111111100 00112346666664432221111100 12345788888888874332 333
Q ss_pred eEEEEEEEEeCCCccccceEEEEeecCceeEeee---CCCCCCcCCCCCCCccEEEEEEeCCCCCCCeEEEEEEEEEeCC
Q 045023 720 TTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLD---PASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNN 796 (812)
Q Consensus 720 ~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~---p~S~~~l~~~~~~~itQ~~~i~n~~~~~k~l~lr~klsY~~~g 796 (812)
.-.+-++|.|+++.++++|+-++--|-...+.|. -|+-.+++|+.+ +.|.+.+.+.....++.- +-++|+.||
T Consensus 732 ~grl~LfygNkts~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~q--vQQ~~~v~~i~d~~d~pi--l~isfk~g~ 807 (938)
T KOG1077|consen 732 LGRLYLFYGNKTSVPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQ--VQQSLEVSCIRDFEDPPI--LAISFKFGG 807 (938)
T ss_pred CCeEEEEecccccccccccceeeecCCchhhhhhhcCcccCCCCCccce--ecceeeeeeecccccCCe--EEEEEEeCC
Confidence 3478999999999999999999988877777664 245566898764 488888887654332332 567788887
Q ss_pred ee
Q 045023 797 RD 798 (812)
Q Consensus 797 ~~ 798 (812)
..
T Consensus 808 ti 809 (938)
T KOG1077|consen 808 TI 809 (938)
T ss_pred ch
Confidence 53
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.1e-73 Score=672.29 Aligned_cols=481 Identities=16% Similarity=0.233 Sum_probs=405.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHH
Q 045023 31 RKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSL 110 (812)
Q Consensus 31 ~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl 110 (812)
+.|+++||+.|++++.++|+++++|+|++|++|+|++++|++|+++++|++++.|||||||++.|++.+||+++|++|+|
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl 110 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTF 110 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHH
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-----C---Cc------hhHHHHHHHHhcC
Q 045023 111 KQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP-----K---CL------DGLVKTLRDVVNS 176 (812)
Q Consensus 111 ~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA-----~---~v------~~lv~~L~~L~~~ 176 (812)
+||++|+||++||+|||+||+|+.++|++.+.+.|++++.|++|||||+| | .- ..++..|.+++.+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 1 11 2345666666542
Q ss_pred C-----------------CCCc-----c-------ccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhcccc
Q 045023 177 P-----------------YAPE-----Y-------DIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTES 227 (812)
Q Consensus 177 ~-----------------~~pe-----~-------~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~ 227 (812)
. ..|+ + .....++||+|+.||++|..|.+.+.+. ..+++..+....
T Consensus 191 ~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e---~~~il~~l~~~L-- 265 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES---AETLLTRVLPRM-- 265 (746)
T ss_pred CCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHh--
Confidence 1 1121 1 1135679999999999999988765443 345555555443
Q ss_pred CCCCcchHHHHHHHHHHhcCC--ChhHHHHHHHHHHH---hhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc
Q 045023 228 NKNAGNAILYECVETIMSIED--NGGLRVLAINILGR---FLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK 302 (812)
Q Consensus 228 ~kn~~~aVl~e~v~~i~~i~~--~~~L~~l~i~~L~~---fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~ 302 (812)
++.++||+++|+++++.+.. ++.+...++..++. +|.++++|+||++|++|..++..+|.+|++|.. +|+|+.
T Consensus 266 -q~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~-~Ff~~~ 343 (746)
T PTZ00429 266 -SHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLD-SFYVRY 343 (746)
T ss_pred -cCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHH-hhhccc
Confidence 23568999999999999865 34555555444432 457889999999999999999999999999954 566888
Q ss_pred ccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchH
Q 045023 303 DLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKD 382 (812)
Q Consensus 303 d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~ 382 (812)
+++.+||++||++|+.|+|++|+..|++||.+|+...|.+|++++|++|+.||.||+...+||+++|++++...++++.
T Consensus 344 ~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~- 422 (746)
T PTZ00429 344 SDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLP- 422 (746)
T ss_pred CCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHH-
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999998777754
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh-hccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHH
Q 045023 383 EVWHALIVVISNASDLHGYTVRALYRAVQ-TSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIA 461 (812)
Q Consensus 383 e~i~~i~~li~~~p~l~~~~v~~L~~~l~-~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~ 461 (812)
|++..+.++++++|+. +++..|+..+. +......++.+++|++|||++.+.+. .++++.+
T Consensus 423 e~i~vik~IlrkyP~~--~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a-----------------~~~L~~~ 483 (746)
T PTZ00429 423 QVVTAAKDIVRKYPEL--LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG-----------------KDIIQRF 483 (746)
T ss_pred HHHHHHHHHHHHCccH--HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH-----------------HHHHHHH
Confidence 7888999999999986 46777776552 23455667999999999999987542 1345455
Q ss_pred Hhcc-CCCHHHHHHHHHHHHHHHccCCC-ChHHHHHHHHHhh-CCCChHHHHHHHHHHHHhccC---HHHHHHhhhcCCC
Q 045023 462 IKHH-SSDITTKAMAMVALLKLSSRFPS-CSERIRDIIVQNK-GSLVLELQQRSIEFNSIVEKH---QNIRSTLVERMPV 535 (812)
Q Consensus 462 l~~~-~~~~~vk~~iLtAl~KL~~r~p~-~~~~i~~ll~~~~-~s~~~evqqRA~ey~~Ll~~~---~~~~~~ll~~mP~ 535 (812)
++.+ .++.+||.++|||++|++.+.|+ .++.+.++|+.++ .+.|+||||||++||+||+.+ ...++.++.+.|+
T Consensus 484 i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~ 563 (746)
T PTZ00429 484 IDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVHGQMVP 563 (746)
T ss_pred HhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHcCCCCC
Confidence 5443 35789999999999999999984 6778999998886 589999999999999999854 3478899999888
Q ss_pred Ccc
Q 045023 536 LDE 538 (812)
Q Consensus 536 ~~~ 538 (812)
+..
T Consensus 564 i~~ 566 (746)
T PTZ00429 564 VNV 566 (746)
T ss_pred CCc
Confidence 754
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=4e-70 Score=637.90 Aligned_cols=472 Identities=34% Similarity=0.549 Sum_probs=408.0
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHH
Q 045023 26 ERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLML 105 (812)
Q Consensus 26 Er~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L 105 (812)
||++|.+|++++|+.++ .+.++|+++++||+|++++|+|++||+++|+++++|++++.||+||||++.++++++|+++|
T Consensus 1 ~~~~~~~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 1 ERKRISQELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred CcchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH
Confidence 89999999999999998 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC------------CCchh-HHHHHHH
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP------------KCLDG-LVKTLRD 172 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA------------~~v~~-lv~~L~~ 172 (812)
++|+++|||+|+||++||+||++||++++++|++.+.+.|.+++.|++|||||+| ..++. +++.+.+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQ 159 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999 24444 5666666
Q ss_pred HhcCC--------------C--CCcc---------c----cccCCChhHHHHHHHHHHhcCCCCchhh--hHHHHHHHHH
Q 045023 173 VVNSP--------------Y--APEY---------D----IAGITDPFLHIRLLKLLHVLGQGDADAS--DCMNDILAQV 221 (812)
Q Consensus 173 L~~~~--------------~--~pe~---------~----~~~~~dpwlqv~lL~lL~~l~~~~~~~~--~~l~diL~~v 221 (812)
++.+. + .++. . ..+.++||+|++++++|+.|++.++... ..+.+.+...
T Consensus 160 lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred hccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 55321 1 1111 1 1378999999999999999999887766 3444444444
Q ss_pred hhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccc
Q 045023 222 ATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECV 301 (812)
Q Consensus 222 ~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL 301 (812)
.. +.+.+|+|||+++++.+...+.+...+++.|++||.++++|+||++|++|..++..++..+. |...+++|+
T Consensus 240 l~------s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l 312 (526)
T PF01602_consen 240 LQ------SSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFL 312 (526)
T ss_dssp HH------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHH
T ss_pred hh------ccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhhee
Confidence 43 35889999999999999988888889999999999999999999999999999999977777 666666676
Q ss_pred c-ccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh-hcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCcc
Q 045023 302 K-DLDASIRKRALELVYLLVNESNVKPLTKELIDYLE-ISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNF 379 (812)
Q Consensus 302 ~-d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~-~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~ 379 (812)
. ++|.+||++||++++.++|++|+..|++||+.|+. .+|.+++.+++.+|+.+|++|+++..||++++++++..+|++
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~ 392 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDY 392 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGG
T ss_pred cCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccc
Confidence 6 99999999999999999999999999999999994 559999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHH
Q 045023 380 VKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVE 459 (812)
Q Consensus 380 v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~ 459 (812)
+..++|..+++++.++|+.+.+++.+|++.+.+ ...+.++++++|++||||+...+. + ...++++
T Consensus 393 ~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~~~~~~-------------~-~~~~~~~ 457 (526)
T PF01602_consen 393 VSNEIINVIRDLLSNNPELREKILKKLIELLED-ISSPEALAAAIWILGEYGELIENT-------------E-SAPDILR 457 (526)
T ss_dssp CHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCHHHTTT-------------T-HHHHHHH
T ss_pred ccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCCccccc-------------c-cHHHHHH
Confidence 999999999999999999999999999999996 566668999999999999987540 1 2334444
Q ss_pred HHHhcc-CCCHHHHHHHHHHHHHHHccCCC--ChHHHHHHHHHhhC--CCChHHHHHHHHHHHHhc
Q 045023 460 IAIKHH-SSDITTKAMAMVALLKLSSRFPS--CSERIRDIIVQNKG--SLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 460 ~~l~~~-~~~~~vk~~iLtAl~KL~~r~p~--~~~~i~~ll~~~~~--s~~~evqqRA~ey~~Ll~ 520 (812)
.+.+.+ .++..||.++|||++|++.+.|+ ..+.+.+++..+.+ |.|+||||||+||++||+
T Consensus 458 ~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 458 SLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 444443 35688999999999999999984 45689999998888 999999999999999995
No 5
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-64 Score=560.47 Aligned_cols=490 Identities=27% Similarity=0.478 Sum_probs=430.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchh
Q 045023 7 GTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKR 86 (812)
Q Consensus 7 ~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KR 86 (812)
-.+|++|||.||.++. +|+..|.+-+.++|+.+++.+...|..++.||.|+.|+|+|++|.-+++++.|+|..|..||
T Consensus 13 ~ksl~dlikgir~~~~--~e~~fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~kr 90 (877)
T KOG1059|consen 13 EKSLKDLIKGIRSHKE--DEEKFISQCLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKR 90 (877)
T ss_pred HHhHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHH
Confidence 3569999999999874 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC------
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP------ 160 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA------ 160 (812)
+||+++..-+..+.|+++|+||.++||++|+|.|-+|+||..||++.+++++|+|+++|.-+|+|+.|||||||
T Consensus 91 igylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lyk 170 (877)
T KOG1059|consen 91 IGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYK 170 (877)
T ss_pred HhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------CC---------------chhHHHHHHHHhcCC------CCCcc-c-cccCCChhHHHHHHHHHHhcCCCC
Q 045023 161 ----------KC---------------LDGLVKTLRDVVNSP------YAPEY-D-IAGITDPFLHIRLLKLLHVLGQGD 207 (812)
Q Consensus 161 ----------~~---------------v~~lv~~L~~L~~~~------~~pe~-~-~~~~~dpwlqv~lL~lL~~l~~~~ 207 (812)
.+ +...|.++++|...+ ++|.| . .....+.|..|+||++|..+.+-+
T Consensus 171 vFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE 250 (877)
T KOG1059|consen 171 VFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE 250 (877)
T ss_pred HHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccC
Confidence 12 334556677776543 45664 2 356688999999999999999999
Q ss_pred chhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC------CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 045023 208 ADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE------DNGGLRVLAINILGRFLSNRDNNIRYVALNMLMK 281 (812)
Q Consensus 208 ~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~------~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~ 281 (812)
|+...++.+-|+.+..+| +..+++||||+|++..+ .+....++|+..|+.|+.+.|+|+||++|..|.+
T Consensus 251 PRLgKKLieplt~li~sT-----~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMEST-----VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred chhhhhhhhHHHHHHHhh-----HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 999998888888777665 57889999999999762 2345778999999999999999999999999999
Q ss_pred HHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCH-HHHHHHHHHHHHHHhh---
Q 045023 282 AITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQ-EFKGDLTAKICSMVEK--- 357 (812)
Q Consensus 282 l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~-~~~~~li~~I~~la~k--- 357 (812)
|+..||.+|+.|...|+.||.|.|.+||.|||+|++.|++++|+.+||+.|+.|+..++. .||.+++.+|..+|.+
T Consensus 326 I~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 326 ILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998876 8999999999988875
Q ss_pred -hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhc----c--c---hHHHHHHHHHhh
Q 045023 358 -FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTS----I--E---QESLVRVAIWCI 427 (812)
Q Consensus 358 -~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~----~--~---~~~l~~~~~Wii 427 (812)
|-.+++||+.+++++....|..-...+.++|+++..+.|.+|..+|..+...+.+. . . -..++.+++||+
T Consensus 406 ~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~ 485 (877)
T KOG1059|consen 406 QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWIL 485 (877)
T ss_pred hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHH
Confidence 56899999999999999998777788899999999999999999999988888742 1 1 135789999999
Q ss_pred hhcccccccCccccccCCCCccChhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHccC-----CC--------ChHH
Q 045023 428 GEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH--SSDITTKAMAMVALLKLSSRF-----PS--------CSER 492 (812)
Q Consensus 428 GEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~--~~~~~vk~~iLtAl~KL~~r~-----p~--------~~~~ 492 (812)
|||++++.++. ++ ++.+++-. ..+..++...+-++.|+|+.+ |. ..+.
T Consensus 486 GEyse~ven~~--------------~~---leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~ 548 (877)
T KOG1059|consen 486 GEYSEFVENPN--------------DT---LEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNL 548 (877)
T ss_pred HHHHHHhhCHH--------------HH---HHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHH
Confidence 99999886532 33 44444432 346889999999999999976 21 1245
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 493 IRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 493 i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
+...|..+..+.|.|||.||.+...++.
T Consensus 549 i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 549 ILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred HHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 6677888999999999999888877774
No 6
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-55 Score=485.04 Aligned_cols=478 Identities=17% Similarity=0.253 Sum_probs=407.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhh
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kD 113 (812)
=+.+++.|.++....|+++|+++|.+++.|.|++.+|..|+|+++|++.+.||++|+|+..|++++||+++|.+|++||+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~ 116 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKA 116 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC------------CchhHHHHHHHHhcC-----
Q 045023 114 LNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK------------CLDGLVKTLRDVVNS----- 176 (812)
Q Consensus 114 L~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~------------~v~~lv~~L~~L~~~----- 176 (812)
|.++|+.+||.|||+|++|+.+-+++.+.-.|+++..|.+|||||.|. .-++|+++++.|+..
T Consensus 117 L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splV 196 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLV 196 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999999999999999999999999992 234788888888764
Q ss_pred ---------CCCCcc-c-----------cccCCChhHHHHHHHHHHhcCCC---Cchh----------------------
Q 045023 177 ---------PYAPEY-D-----------IAGITDPFLHIRLLKLLHVLGQG---DADA---------------------- 210 (812)
Q Consensus 177 ---------~~~pe~-~-----------~~~~~dpwlqv~lL~lL~~l~~~---~~~~---------------------- 210 (812)
.+||++ + +....++|+|+.++.+|.+|++. +|..
T Consensus 197 vgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~ 276 (968)
T KOG1060|consen 197 VGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIR 276 (968)
T ss_pred hhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccC
Confidence 367773 1 24567899999999999999863 1210
Q ss_pred ----hh-HHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 045023 211 ----SD-CMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV 285 (812)
Q Consensus 211 ----~~-~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~ 285 (812)
.+ .+ ++|-+-....-.+ .+.+|++.|++..+++.+..... ..+..|.++|.+ .+++||+.|+++..++..
T Consensus 277 ~P~~~d~D~-~lLL~stkpLl~S--~n~sVVmA~aql~y~lAP~~~~~-~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~ 351 (968)
T KOG1060|consen 277 TPYVNDPDL-KLLLQSTKPLLQS--RNPSVVMAVAQLFYHLAPKNQVT-KIAKALVRLLRS-NREVQYVVLQNIATISIK 351 (968)
T ss_pred CCcccCccH-HHHHHhccHHHhc--CCcHHHHHHHhHHHhhCCHHHHH-HHHHHHHHHHhc-CCcchhhhHHHHHHHHhc
Confidence 00 11 1222211111123 35799999999999998766543 457888887754 689999999999999999
Q ss_pred CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHH
Q 045023 286 DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWY 365 (812)
Q Consensus 286 ~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~ 365 (812)
+|.+|.+|.+.||-|=.| +.-||..+|++|..|+|+.|+.+|++||..|+...|-+|....|.+||+||.+.-.....|
T Consensus 352 ~~~lF~P~lKsFfv~ssD-p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC 430 (968)
T KOG1060|consen 352 RPTLFEPHLKSFFVRSSD-PTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC 430 (968)
T ss_pred chhhhhhhhhceEeecCC-HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH
Confidence 999999999998755544 4689999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCC
Q 045023 366 IDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIED 445 (812)
Q Consensus 366 vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~ 445 (812)
++.|+.+|+.....|..|.+.+|..++.++|-.|..++.+|.+.++ .+....+++.++|+||||+..+.. +.
T Consensus 431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lld-ti~vp~ARA~IiWLige~~e~vpr---i~---- 502 (968)
T KOG1060|consen 431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLD-TILVPAARAGIIWLIGEYCEIVPR---IA---- 502 (968)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh-hhhhhhhhceeeeeehhhhhhcch---hc----
Confidence 9999999999999999999999999999999999999999999886 566667899999999999998643 21
Q ss_pred CCccChhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHccCCCChH-HHHHHHHHhhCCCChHHHHHHHHHHHHhccC-
Q 045023 446 PITVTESDAVDVVEIAIKHH-SSDITTKAMAMVALLKLSSRFPSCSE-RIRDIIVQNKGSLVLELQQRSIEFNSIVEKH- 522 (812)
Q Consensus 446 ~~~v~~~~vi~~l~~~l~~~-~~~~~vk~~iLtAl~KL~~r~p~~~~-~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~- 522 (812)
-|+++.+.+++ .+.++||++||...+||+....+... .+..+++...+|.++|+||||++|.+|+...
T Consensus 503 ---------PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 503 ---------PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLISPLE 573 (968)
T ss_pred ---------hHHHHHHHHhhccccchhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhccHH
Confidence 25566666654 46789999999999999998865444 4667999999999999999999999999632
Q ss_pred ---HHHHHHhhhcCC
Q 045023 523 ---QNIRSTLVERMP 534 (812)
Q Consensus 523 ---~~~~~~ll~~mP 534 (812)
.+.++.++.+-|
T Consensus 574 ~Ls~h~~ei~l~~Kp 588 (968)
T KOG1060|consen 574 ALSKHAREIFLASKP 588 (968)
T ss_pred HHHHHHHHHhhccCC
Confidence 356777887775
No 7
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-54 Score=489.51 Aligned_cols=483 Identities=18% Similarity=0.290 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHH
Q 045023 31 RKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSL 110 (812)
Q Consensus 31 ~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl 110 (812)
+.|..+.|+.|.+...++|+.+++|+|..|..|+|++..|++++|++++.|.+.||++|||++.|...+|+..++++|++
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~ 91 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTF 91 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhh
Confidence 56888999999887789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC--------------CchhHHHHHHHHhcC
Q 045023 111 KQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK--------------CLDGLVKTLRDVVNS 176 (812)
Q Consensus 111 ~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~--------------~v~~lv~~L~~L~~~ 176 (812)
.||..++||.+|++|+|+++.++...+.+.+...+.++++|.+|||||+|. ....++..|++++..
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSD 171 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999991 233466666666552
Q ss_pred C-----------------CCCc---------c-----ccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhcc
Q 045023 177 P-----------------YAPE---------Y-----DIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKT 225 (812)
Q Consensus 177 ~-----------------~~pe---------~-----~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~ 225 (812)
. -.|+ + .-...+++|+|+.+|..+..|.+.+....+ +++.++..+.
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~L 248 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE---DICERLTPRL 248 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhh
Confidence 1 0111 1 124569999999999999999998774433 4555554432
Q ss_pred ccCCCCcchHHHHHHHHHHhcCC--C---hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccc
Q 045023 226 ESNKNAGNAILYECVETIMSIED--N---GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILEC 300 (812)
Q Consensus 226 ~~~kn~~~aVl~e~v~~i~~i~~--~---~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~c 300 (812)
.+++.+|++.+++.+++.-. . ..+.+.....+..+++ ..++++||+|+++..+++..|+.+..+. .+|+|
T Consensus 249 ---qh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls-~~~e~qyvaLrNi~lil~~~p~~~~~~~-~~Ff~ 323 (734)
T KOG1061|consen 249 ---QHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLS-SESEIQYVALRNINLILQKRPEILKVEI-KVFFC 323 (734)
T ss_pred ---ccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeec-ccchhhHHHHhhHHHHHHhChHHHHhHh-Heeee
Confidence 35788999999999997532 1 1233333444444454 4559999999999999999999776664 45679
Q ss_pred ccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccc
Q 045023 301 VKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFV 380 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v 380 (812)
-+++++|||..+|+++..++|..|+.+++.||.+|....|.+|.++.|++|+.+|.|+... .-||+++++++....+|+
T Consensus 324 kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yv 402 (734)
T KOG1061|consen 324 KYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYV 402 (734)
T ss_pred ecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccce
Confidence 9999999999999999999999999999999999999999999999999999999998877 779999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHH
Q 045023 381 KDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEI 460 (812)
Q Consensus 381 ~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~ 460 (812)
.+|++..|+++++.+|...+.++..++..++. ...+.++.+++|++|||++-+.+. ..+|+.
T Consensus 403 vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~s-l~epeak~amiWilg~y~~~i~~a-----------------~elL~~ 464 (734)
T KOG1061|consen 403 VQEAIVVIRDILRKYPNKYESVVAILCENLDS-LQEPEAKAALIWILGEYAERIENA-----------------LELLES 464 (734)
T ss_pred eeehhHHHHhhhhcCCCchhhhhhhhcccccc-cCChHHHHHHHHHHhhhhhccCcH-----------------HHHHHH
Confidence 99999999999999999998888888888874 444557999999999999987643 345666
Q ss_pred HHhcc-CCCHHHHHHHHHHHHHHHccCC-CChHHHHHHHHHhhC-CCChHHHHHHHHHHHHhccCHHHH-HHhhhcCCCC
Q 045023 461 AIKHH-SSDITTKAMAMVALLKLSSRFP-SCSERIRDIIVQNKG-SLVLELQQRSIEFNSIVEKHQNIR-STLVERMPVL 536 (812)
Q Consensus 461 ~l~~~-~~~~~vk~~iLtAl~KL~~r~p-~~~~~i~~ll~~~~~-s~~~evqqRA~ey~~Ll~~~~~~~-~~ll~~mP~~ 536 (812)
++... .++.+||..+|||.+|+|.++| +.++.+..+|..++. +.|+|+|||+.+||++|+.++.+. +.++.++|.+
T Consensus 465 f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~i 544 (734)
T KOG1061|consen 465 FLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLI 544 (734)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCcc
Confidence 66553 4578999999999999999998 567889999999996 778899999999999999776644 5778999988
Q ss_pred cccc
Q 045023 537 DEAT 540 (812)
Q Consensus 537 ~~~~ 540 (812)
.+..
T Consensus 545 s~~~ 548 (734)
T KOG1061|consen 545 SEET 548 (734)
T ss_pred ccCC
Confidence 7764
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-41 Score=379.06 Aligned_cols=394 Identities=18% Similarity=0.303 Sum_probs=338.9
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHh-hccCCCCchhHHHHHHHHh--cccchhH---HHHHHH
Q 045023 35 AAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKS-IASAGFPEKRIGYLGLMLL--LDERQEV---LMLVTN 108 (812)
Q Consensus 35 a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikl-i~s~~~~~KRlgYL~~~~l--l~~~~el---~~L~~N 108 (812)
.+|+++|++.+.+.|.++|+|+|+++..|++++..+|+||+. +.+.+++.||+-|+|+.+. .++++.+ ++|++|
T Consensus 23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 478999999999999999999999999999999999999997 6899999999999999997 4444444 899999
Q ss_pred HHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC--------C----CchhHHHHHHHHhcC
Q 045023 109 SLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--------K----CLDGLVKTLRDVVNS 176 (812)
Q Consensus 109 sl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--------~----~v~~lv~~L~~L~~~ 176 (812)
.++|||+|||+||||..||+||.+..+|+.+.++|.|..||.|+++||||.| + ++|..-+.+...+..
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~ 182 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLT 182 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 2 122222222222221
Q ss_pred C---------------CCCcc--cc-------ccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCc
Q 045023 177 P---------------YAPEY--DI-------AGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAG 232 (812)
Q Consensus 177 ~---------------~~pe~--~~-------~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~ 232 (812)
. ..||. +| .+..++-+|..|+++++.-+...|.....+..++..+++. .+
T Consensus 183 e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~s------ts 256 (948)
T KOG1058|consen 183 EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSS------TS 256 (948)
T ss_pred ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhc------CC
Confidence 1 11221 12 2345788999999999999888877766666666666654 37
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 233 NAILYECVETIMSIEDNGGLRVLAINILGRFL-SNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL-~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
++|.|||.-++..+++++.+.+.+.+.+..++ ..+|+|++.+.|..|..+-..+..+++.....|+..|..+|..+|++
T Consensus 257 saV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~K 336 (948)
T KOG1058|consen 257 SAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSK 336 (948)
T ss_pred chhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHH
Confidence 89999999999999999999999999988876 55899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhh-------cCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHH
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYLEI-------SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEV 384 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl~~-------~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~ 384 (812)
+|++.+.|+...|+.+|+.-|..-+.+ ....||..++++|..+|.+|+......|..+++.+.........++
T Consensus 337 tldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~v 416 (948)
T KOG1058|consen 337 TLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDV 416 (948)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 999999999999999999888876543 1356999999999999999999999999999999999888788888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccc
Q 045023 385 WHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLV 435 (812)
Q Consensus 385 i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~ 435 (812)
+.-++..+..+|+++..++.+|.+.+.. +....+.+.++|++|||+.-..
T Consensus 417 l~FvrE~iek~p~Lr~~ii~~l~~~~~~-irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 417 LMFVREAIEKFPNLRASIIEKLLETFPQ-IRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHhhhh-hcccccchhHHHHHHHHHhhhH
Confidence 8888889999999999999999999984 5555678999999999987654
No 9
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.1e-41 Score=385.14 Aligned_cols=478 Identities=18% Similarity=0.279 Sum_probs=374.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHH
Q 045023 10 LRDMIRSIRACKTAAEERAVVRKECAAIRAA-INENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIG 88 (812)
Q Consensus 10 L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~-l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlg 88 (812)
+.++++.-|+++ +.++.|.. +.+.+.++|+.+++|+|..|+.|+|++.+|++|||.+++.|.+.|||.
T Consensus 7 ~~~~~~~~~~~~-----------~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ 75 (757)
T COG5096 7 FKDSIRKARNAD-----------SVAALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLL 75 (757)
T ss_pred HHHHHhhhccch-----------HHhhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHH
Confidence 355555555543 56677777 888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC-------
Q 045023 89 YLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK------- 161 (812)
Q Consensus 89 YL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~------- 161 (812)
|+|+..|...+|++++|++|+++||++|+||++||+|||+|+.++.++++..+++.|++++.|++|||||+|.
T Consensus 76 ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 76 YLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999991
Q ss_pred ------Cchh-HHHHHHHHhcCC--------------CCCc----c-----------cc--ccCCChhHHHHHHHHHHhc
Q 045023 162 ------CLDG-LVKTLRDVVNSP--------------YAPE----Y-----------DI--AGITDPFLHIRLLKLLHVL 203 (812)
Q Consensus 162 ------~v~~-lv~~L~~L~~~~--------------~~pe----~-----------~~--~~~~dpwlqv~lL~lL~~l 203 (812)
+... ++.+++.++.+. +.|| | +. ...+.+|++..++..|..+
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~ 235 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTER 235 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHcc
Confidence 2222 456666665421 2233 1 00 1122489999999999988
Q ss_pred CCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC---CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 045023 204 GQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE---DNGGLRVLAINILGRFLSNRDNNIRYVALNMLM 280 (812)
Q Consensus 204 ~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~---~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~ 280 (812)
.+.++..++.+.+-+.-. ....+.+|+.-+++.|+.+. ++..+....-+.|..++..+...+.||......
T Consensus 236 ~~~~~~s~~~~~~~~~~~------~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~ 309 (757)
T COG5096 236 VPTTPDSAEDFEERLSPP------LQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQ 309 (757)
T ss_pred CCCCCCcHHHHHHhccch------hhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhH
Confidence 887776544443332211 12356789999999998753 233344444566666665555789999999988
Q ss_pred HHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh--cCHHHHHHHHHHHHHHHhhh
Q 045023 281 KAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEI--SDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 281 ~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~--~d~~~~~~li~~I~~la~k~ 358 (812)
.+....+.++.. ...++.|-+++|++++..+++++..+.+.+|...++.|+..|+.. .|+++.+++++.|+.++.+.
T Consensus 310 ~~l~~~~k~~~~-~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~ 388 (757)
T COG5096 310 IDLEVCSKLLDK-VKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKA 388 (757)
T ss_pred HHHHhhHHHHHH-HhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh
Confidence 888888887754 566788999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCchhHHHHHHHHHHh---hcCccchHHH-----HHHHH---HHHHh----CCCcHHHHHHHHHHHHhhccchHHHHHHH
Q 045023 359 SPDKIWYIDQMLKVLS---EAGNFVKDEV-----WHALI---VVISN----ASDLHGYTVRALYRAVQTSIEQESLVRVA 423 (812)
Q Consensus 359 ~~~~~w~vd~ll~lL~---~~g~~v~~e~-----i~~i~---~li~~----~p~l~~~~v~~L~~~l~~~~~~~~l~~~~ 423 (812)
+....-|++.++.++. ..|.|+..|+ |..+. ..++. +++.+...+.++.+.+.....++..+.++
T Consensus 389 ~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~ 468 (757)
T COG5096 389 ESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVT 468 (757)
T ss_pred hhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHH
Confidence 8777889999999999 8899999888 54443 33333 25666666777777776322233446666
Q ss_pred -----HHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCC-h----HHH
Q 045023 424 -----IWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSC-S----ERI 493 (812)
Q Consensus 424 -----~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~-~----~~i 493 (812)
+|++|||++.+.+-. ++.++.+ +.....++.+||.+|+++.+|++...+.. . +..
T Consensus 469 ~~~~~~wl~ge~~~~i~r~~-------------~~~l~~~--~~~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d 533 (757)
T COG5096 469 DKYLGAWLLGEFSDIIPRLE-------------PELLRIA--ISNFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELD 533 (757)
T ss_pred hhhhHHHhHHHHHHHHhhhh-------------HHHHHHH--HHHhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhc
Confidence 999999999875421 1233322 12234578999999999999999987531 1 344
Q ss_pred HHHHHHhh-CCCChHHHHHHHHHHHHhc
Q 045023 494 RDIIVQNK-GSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 494 ~~ll~~~~-~s~~~evqqRA~ey~~Ll~ 520 (812)
..++..+. +..++|+||||.+|+++++
T Consensus 534 ~~v~~~~~~~v~~~DlRDra~my~~~ls 561 (757)
T COG5096 534 QDVLRRCFDYVLVPDLRDRARMYSRLLS 561 (757)
T ss_pred cHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 46777766 5888999999999999997
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-31 Score=300.92 Aligned_cols=466 Identities=20% Similarity=0.245 Sum_probs=383.9
Q ss_pred HHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHcCCCC-----CChhHHHHHhhccCCCCchhHHHHHHHHhccc
Q 045023 26 ERAVVRKECAAIRAAINEN--DQDYRHRNLAKLMFIHMLGYPT-----HFGQMECLKSIASAGFPEKRIGYLGLMLLLDE 98 (812)
Q Consensus 26 Er~~i~~E~a~Ir~~l~~~--~~~~r~~~l~KLiyl~~lG~~~-----~~~~~evikli~s~~~~~KRlgYL~~~~ll~~ 98 (812)
|+..|.+|+ | .|++. ++.+.++.+.||+|+...|+.. ...|+.+.||++|++..+||+.|++...+..-
T Consensus 19 ~k~~vlqe~---r-~fnespvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~i 94 (865)
T KOG1078|consen 19 EKTTVLQEA---R-TFNESPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKI 94 (865)
T ss_pred hHHHHHHHH---H-hhcCCCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc
Confidence 556677777 5 88887 7888889999999999999865 57899999999999999999999999987655
Q ss_pred chhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC--------CCchhHHHHH
Q 045023 99 RQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--------KCLDGLVKTL 170 (812)
Q Consensus 99 ~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--------~~v~~lv~~L 170 (812)
..| .+++|+++.||.+..++..|+.|+|+|+.|-...|+......+++.+.++++.|+-.| +.....++..
T Consensus 95 sed-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw 173 (865)
T KOG1078|consen 95 SED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRW 173 (865)
T ss_pred chh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHH
Confidence 444 5679999999999999999999999999999999999999999999999999999888 1222222222
Q ss_pred HHHhcCCCCCc-----------------------------cccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHH
Q 045023 171 RDVVNSPYAPE-----------------------------YDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQV 221 (812)
Q Consensus 171 ~~L~~~~~~pe-----------------------------~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v 221 (812)
.+-+.....++ +.-++..+|+..+.++|.-..+...++.....+.+.+..+
T Consensus 174 ~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~ 253 (865)
T KOG1078|consen 174 ANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESC 253 (865)
T ss_pred HHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 21111111111 0114567888888888888777665544334555666666
Q ss_pred hhccccCCCCcchHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccc
Q 045023 222 ATKTESNKNAGNAILYECVETIMSIED-NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILEC 300 (812)
Q Consensus 222 ~~~~~~~kn~~~aVl~e~v~~i~~i~~-~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~c 300 (812)
+. |.+..|.||+.+.|..+.. .+....-++..|..||++...-+||.|+++|.+++..+|.++.-.-..+-.+
T Consensus 254 l~------~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~l 327 (865)
T KOG1078|consen 254 LR------HKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESL 327 (865)
T ss_pred Hh------chhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhh
Confidence 64 4678999999999998864 2333344899999999999999999999999999999999988777777788
Q ss_pred ccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCcc-
Q 045023 301 VKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNF- 379 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~- 379 (812)
..|.+.+|...|+..|++-.+++|+..+++.+-.|+.+.+++||.-++.+|..+|.+|+....-+++.+.++|+..|.+
T Consensus 328 Itd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e 407 (865)
T KOG1078|consen 328 ITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFE 407 (865)
T ss_pred hcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997763
Q ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHH-H
Q 045023 380 VKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDV-V 458 (812)
Q Consensus 380 v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~-l 458 (812)
....++..|+.++..+|+.++..+..||+++++ +....+.--+..++|+-|....+ |+.+++. +
T Consensus 408 ~K~aivd~Ii~iie~~pdsKe~~L~~LCefIED-ce~~~i~~rILhlLG~EgP~a~~--------------Pskyir~iy 472 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDSKERGLEHLCEFIED-CEFTQIAVRILHLLGKEGPKAPN--------------PSKYIRFIY 472 (865)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHh-ccchHHHHHHHHHHhccCCCCCC--------------cchhhHHHh
Confidence 567788899999999999999999999999995 44444455567778877765433 3445543 3
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 459 EIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 459 ~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
.++ +.+...+|+..++|++|+....+...+.|.-++.+|..|.|.|+||||.+|...+.
T Consensus 473 NRv---iLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 473 NRV---ILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhh---hhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 333 24678999999999999997778888999999999999999999999999999996
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.5e-27 Score=257.68 Aligned_cols=459 Identities=15% Similarity=0.161 Sum_probs=364.8
Q ss_pred HHHHHccC--ChHHHHHHHHHHHHHHHcCCCC-----CChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHH
Q 045023 37 IRAAINEN--DQDYRHRNLAKLMFIHMLGYPT-----HFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNS 109 (812)
Q Consensus 37 Ir~~l~~~--~~~~r~~~l~KLiyl~~lG~~~-----~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Ns 109 (812)
-++.|.+. ++...++.+.+|.|+...|+-. ...|+.+.|++++++..+|..+|+++..+..-.. -.+|.||+
T Consensus 27 ~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dvlm~tss 105 (898)
T COG5240 27 MNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTE-DVLMGTSS 105 (898)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcch-hhhHHHHH
Confidence 37889876 6677789999999999999866 4789999999999999999999999998765543 35789999
Q ss_pred HHhhcCCCCH-hHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-----CCchh---HHHH-HH---HHhc-
Q 045023 110 LKQDLNHTNQ-YIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP-----KCLDG---LVKT-LR---DVVN- 175 (812)
Q Consensus 110 l~kDL~s~n~-~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA-----~~v~~---lv~~-L~---~L~~- 175 (812)
|.||++...| .++..|+|+|-.+-..+++.+.-.-+...+.++++-+|..| ++.|. .++. ++ +-+.
T Consensus 106 iMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 106 IMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred HHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 9999998877 99999999999999999999988888888889999999888 22222 1111 11 1111
Q ss_pred ----------CCCCCcc----cc--------ccCCChhHHHHHHHHHHhcCCC-------------------CchhhhHH
Q 045023 176 ----------SPYAPEY----DI--------AGITDPFLHIRLLKLLHVLGQG-------------------DADASDCM 214 (812)
Q Consensus 176 ----------~~~~pe~----~~--------~~~~dpwlqv~lL~lL~~l~~~-------------------~~~~~~~l 214 (812)
.+|.|.- .| ....|-.+|.++++.|+--..- +++....|
T Consensus 186 l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~ 265 (898)
T COG5240 186 LKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL 265 (898)
T ss_pred HhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH
Confidence 2333321 11 1224555555555555422100 11111112
Q ss_pred HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC---ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 215 NDILAQVATKTESNKNAGNAILYECVETIMSIED---NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 215 ~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~---~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
..+|...+ ++.+.+|-+|++|.++.+.. .+++...++..|..||.+...-.||.|++.|.+++..+|+.|.
T Consensus 266 rpfL~~wl------s~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 266 RPFLNSWL------SDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHh------cCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 22222222 35688999999999998643 4667788999999999999999999999999999999999887
Q ss_pred HhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 045023 292 RHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLK 371 (812)
Q Consensus 292 ~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~ 371 (812)
-+-..+-.+..|.+.+|..-|+..|.+..+++|+..+++.+-.|+.+..+.||.-+|.+|..++.+|+.....+++.|..
T Consensus 340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~ 419 (898)
T COG5240 340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGS 419 (898)
T ss_pred ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 77777778889999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHhhcCcc-chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccC
Q 045023 372 VLSEAGNF-VKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVT 450 (812)
Q Consensus 372 lL~~~g~~-v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~ 450 (812)
.|...|.+ +....+..+.+++.+.|+.++.++..||+++++ +....+..-+..++|+-|....+++
T Consensus 420 ~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIED-cey~~I~vrIL~iLG~EgP~a~~P~------------ 486 (898)
T COG5240 420 SLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIED-CEYHQITVRILGILGREGPRAKTPG------------ 486 (898)
T ss_pred HHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhh-cchhHHHHHHHHHhcccCCCCCCcc------------
Confidence 99988764 678889999999999999999999999999995 4444455667888898887654433
Q ss_pred hhhHHH-HHHHHHhccCCCHHHHHHHHHHHHHHHccCC--CChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 451 ESDAVD-VVEIAIKHHSSDITTKAMAMVALLKLSSRFP--SCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 451 ~~~vi~-~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p--~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
.+++ ++++++- +...+|...+.|+.|++.... -..+.|..++.+|.+|.|-|||+||.+..+-+.
T Consensus 487 --~yvrhIyNR~iL---EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 --KYVRHIYNRLIL---ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred --hHHHHHHHHHHH---hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3443 4555543 468999999999999998773 357789999999999999999999999988885
No 12
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=99.87 E-value=6.9e-22 Score=183.92 Aligned_cols=109 Identities=42% Similarity=0.670 Sum_probs=97.1
Q ss_pred ceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEE
Q 045023 696 SIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVT 775 (812)
Q Consensus 696 ~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~ 775 (812)
++.+|++++|+|.|.+++ +.+++.+.|.++|+|+++.+|++|+||+||||+|+|+|+|+|+++|+| .++|+|.+.|.
T Consensus 2 ~~~~ye~~~l~I~~~~~~-~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p--~~~i~Q~~~v~ 78 (115)
T PF02883_consen 2 EGVLYEDNGLQIGFKSEK-SPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPP--GQQITQVIKVE 78 (115)
T ss_dssp EEEEEEETTEEEEEEEEE-CCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-T--TTEEEEEEEEE
T ss_pred CEEEEeCCCEEEEEEEEe-cCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCC--CCeEEEEEEEE
Confidence 578999999999998887 667889999999999999999999999999999999999999999999 55789999999
Q ss_pred e-----CCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCC
Q 045023 776 N-----SQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809 (812)
Q Consensus 776 n-----~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p 809 (812)
+ +.. ++++|||||+|++||+++.|+++|++||
T Consensus 79 ~~~~~~~~~--~~l~~~~~vsy~~~g~~~~~~~~v~~fp 115 (115)
T PF02883_consen 79 NSPFSEPTP--KPLKPRLRVSYNVGGQPVLELGEVNNFP 115 (115)
T ss_dssp ESS-BSTTS--STTEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred EeecccCCC--CCcCeEEEEEEEECCEEEEEEeeeccCC
Confidence 9 543 6999999999999999999999999998
No 13
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=99.83 E-value=1.1e-19 Score=165.87 Aligned_cols=104 Identities=46% Similarity=0.736 Sum_probs=96.4
Q ss_pred EEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEeCC
Q 045023 699 AFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQ 778 (812)
Q Consensus 699 ~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n~~ 778 (812)
+|++++|+|.|.+++. ++.+.+.++|.|+++.+|++|+||+||||+++|+++|+|+++|+|++ .++|.+.|.++.
T Consensus 1 ~~~~~~l~I~~~~~~~---~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~--~i~q~~~i~~~~ 75 (104)
T smart00809 1 AYEKNGLQIGFKFERR---PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGG--QITQVLKVENPG 75 (104)
T ss_pred CccCCCEEEEEEEEcC---CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCC--CEEEEEEEECCC
Confidence 5899999999988764 46799999999999999999999999999999999999999999975 589999999987
Q ss_pred CCCCCeEEEEEEEEEeCCeeeeeeeEecCCC
Q 045023 779 HGKKPLVMRTRIAYKLNNRDVLEEGQINNFP 809 (812)
Q Consensus 779 ~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p 809 (812)
.. +++||||++|.+||++++|++++..||
T Consensus 76 ~~--~~~~~~~vsy~~~g~~~~~~~~~~~~p 104 (104)
T smart00809 76 KF--PLRLRLRLSYLLGGSAVTEQGDVLKFP 104 (104)
T ss_pred CC--CEEEEEEEEEEECCEEEEEEEEecCCC
Confidence 64 999999999999999999999999987
No 14
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.3e-18 Score=180.51 Aligned_cols=115 Identities=27% Similarity=0.553 Sum_probs=107.1
Q ss_pred CCceEEEecCCeEEEEEeecC--CCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCC----CCC
Q 045023 694 YPSIVAFESSSLRLTFNFSKP--PGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASG----NGS 767 (812)
Q Consensus 694 ~~~~~~~~~~~l~i~~~~~~~--~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~----~~~ 767 (812)
..+++||+++|++|-|+|... ++.+++.++.++.-|+.+.+|.++.||+||||+|+++|||+||+.|++++ .+.
T Consensus 467 ~~Pv~vyd~~GfRILlhfaq~~~pg~sdV~v~vlsmlntap~pikdI~lq~avpk~mkvkLQp~sgteL~~Fspi~ppaa 546 (594)
T KOG1086|consen 467 RLPVTVYDSNGFRILLHFAQSDMPGRSDVLVVVLSMLNTAPQPIKDIVLQLAVPKSMKVKLQPPSGTELPAFSPIMPPAA 546 (594)
T ss_pred CCCeEEEccCCcEEEeeeccCCCCCCCceEEEEEEeecCCCcchhhheeeeccccceeeeccCCCcccCCCCCCCCChHH
Confidence 456999999999999999885 45788888999999999999999999999999999999999999999998 357
Q ss_pred ccEEEEEEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCC
Q 045023 768 ITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPR 810 (812)
Q Consensus 768 itQ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~ 810 (812)
|||+|.+.|+.+. ++|+|+|++|+.|||+.+|+|+|.+||+
T Consensus 547 itqvlllanp~ke--~vrlrykltf~~g~q~~~evgevdqfp~ 587 (594)
T KOG1086|consen 547 ITQVLLLANPHKE--KVRLRYKLTFNQGGQPFSEVGEVDQFPP 587 (594)
T ss_pred HHHHHHhcCcccc--ceeEEEEEEeecCCccchhccccccCCC
Confidence 9999999999885 9999999999999999999999999996
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.94 E-value=8.6e-08 Score=112.47 Aligned_cols=339 Identities=17% Similarity=0.238 Sum_probs=237.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCC-CCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHH-HHHHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYP-THFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLML-VTNSLK 111 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~-~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L-~~Nsl~ 111 (812)
+..+++.+.++++..|.-++.-+-.+. ..+ .......+.+++.+++...||-+.+++..++..+|++.-- ....+.
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~ 158 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLK 158 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 556788899989888888777666644 222 2456777888999999999999999999998888888655 689999
Q ss_pred hhcCCCCHhHHHHHHHHHhcc-Cchh----hHHHHHHHHHHhccCCCcceeccC-----CCc---------hhHHHHHHH
Q 045023 112 QDLNHTNQYIVGLALCALGNI-CSAE----MARDLAPEVERLLQFRDPNIRKKP-----KCL---------DGLVKTLRD 172 (812)
Q Consensus 112 kDL~s~n~~i~~lAL~~Ls~I-~~~e----~~~~l~~~V~~ll~~~~pyVRKkA-----~~v---------~~lv~~L~~ 172 (812)
+-|.++|+.+++.|+.++..| ..++ +.+.++..+.+++...+|.++-++ .+. ..+++.+..
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~ 238 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN 238 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence 999999999999999999999 5554 466777777777788888876554 110 112233322
Q ss_pred HhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCCh--
Q 045023 173 VVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNG-- 250 (812)
Q Consensus 173 L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~-- 250 (812)
++. ..+|=......+++..+.+..+ ........|..+++. ...-+.|-+.+++..+....
T Consensus 239 ~l~-----------s~~~~V~~e~~~~i~~l~~~~~-~~~~~~~~L~~lL~s------~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 239 LLQ-----------SSSPSVVYEAIRLIIKLSPSPE-LLQKAINPLIKLLSS------SDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHTS------SSHHHHHHHHHHHHHHCCHCHH
T ss_pred Hhh-----------ccccHHHHHHHHHHHHhhcchH-HHHhhHHHHHHHhhc------ccchhehhHHHHHHHhhcccch
Confidence 222 1233345566666666555333 233344445555542 23447777777777764422
Q ss_pred hHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccccc-CHhHHHHHHHHHHHhc--CCCCHH
Q 045023 251 GLRVLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDL-DASIRKRALELVYLLV--NESNVK 326 (812)
Q Consensus 251 ~L~~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~-D~sIr~~aLell~~l~--n~~Nv~ 326 (812)
.+. .......++. +.|..+|..+|+.|..++.. .-++.-...+..++++. |..+|+.++.-+..++ ...+..
T Consensus 301 ~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~ 376 (526)
T PF01602_consen 301 AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAE 376 (526)
T ss_dssp HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHH
T ss_pred hhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHH
Confidence 222 1222223444 78999999999999999854 33444445566667544 8889999999888776 466788
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcH
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLH 399 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~ 399 (812)
..++-+++.+...+..+..+++..|..+..+++....+.+..+++.+... -.+++...++.++.++.+..
T Consensus 377 ~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~---~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 377 WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDI---SSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSS---SSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHh---hHHHHHHHHHhhhcccCCcc
Confidence 99999999999888889999999999999999988899999999988873 24567777888888766543
No 16
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.84 E-value=2.9e-06 Score=94.81 Aligned_cols=322 Identities=15% Similarity=0.191 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcc-hHHHHHHHHHHhcC------CChhHHHHHHHHHHHhhc
Q 045023 193 HIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGN-AILYECVETIMSIE------DNGGLRVLAINILGRFLS 265 (812)
Q Consensus 193 qv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~-aVl~e~v~~i~~i~------~~~~L~~l~i~~L~~fL~ 265 (812)
.++-+++|-.+|+.|++..-.....+.++..+..+ +.+. -++...++.++..+ .++.++...-.++++...
T Consensus 7 L~EaV~iLd~lC~~d~s~v~r~~p~ik~l~~R~~~--~~~~~~~lL~i~qFfL~hge~~~~d~e~~~~~~F~~~l~~~f~ 84 (459)
T PF14764_consen 7 LVEAVRILDVLCRQDPSLVYRVFPCIKRLFGRLAS--DLSSARVLLPIAQFFLNHGEAAAVDSEPVLQHFFTSVLSRLFH 84 (459)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhc--CccchHHHHHHHHHHHccChHhhcChHHHHHHHHHHhhHHhcC
Confidence 35667777777888876543333333333332211 1223 37778888877653 344455555555555433
Q ss_pred CCCcchHHHHHHHHH------HHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHH--H--
Q 045023 266 NRDNNIRYVALNMLM------KAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELID--Y-- 335 (812)
Q Consensus 266 ~~d~niryvaL~~L~------~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~--y-- 335 (812)
+ -++|.+++. ++...++.++.+|...|+.++-=.++.....=++||-+|++++++.++..-|++ .
T Consensus 85 d-----p~lA~e~~~F~~~N~~~L~~~~~~~~~~FP~llK~lAWn~~~l~~eFv~LLP~Li~~~Ta~EvlH~LLDLPcLt 159 (459)
T PF14764_consen 85 D-----PFLAFETLQFCRDNLKLLCSNTSIFPQYFPNLLKFLAWNSPSLVSEFVDLLPALISPGTAVEVLHSLLDLPCLT 159 (459)
T ss_pred C-----hHHHHHHHHHHHHHHHHHccccchHhHhchHHHHHHHcCcHHHHHHHHHHhHHHcCCCcHHHHHHHHHhHHHHH
Confidence 2 234433333 334456778888888899988877888999999999999999999998877765 1
Q ss_pred --h----hhc------------------CHHHHHHHHHHHHHHHhhh-C--CchhHHHHHHHHHHhhc------------
Q 045023 336 --L----EIS------------------DQEFKGDLTAKICSMVEKF-S--PDKIWYIDQMLKVLSEA------------ 376 (812)
Q Consensus 336 --l----~~~------------------d~~~~~~li~~I~~la~k~-~--~~~~w~vd~ll~lL~~~------------ 376 (812)
| +.. +..++....+.+..---|- + .+.-|.+..+-+++...
T Consensus 160 aaLe~~~r~s~~~s~~~~~d~~~~~~~~~~~~~~p~~~~lf~~LLR~E~g~g~~~~rl~~L~~lL~~~~~~pRv~~c~~~ 239 (459)
T PF14764_consen 160 AALELQLRSSGAASERPLWDPSLRPSSCLEAFRDPEYRPLFQYLLRDEAGSGGTIERLPPLHQLLQPAAGCPRVVQCAEV 239 (459)
T ss_pred HHHHHHHhcccccccCcccccCCCCccchhhcCCcchhHHHHHHhccccCCCCchhhhHHHHHHHHHhcCCchHHHHHhh
Confidence 1 100 1111111111111111010 0 11222222222222211
Q ss_pred ------------CccchHHHHHHHHHHH-----------------------------HhCCCcHHHHHHHHHHHHhhc--
Q 045023 377 ------------GNFVKDEVWHALIVVI-----------------------------SNASDLHGYTVRALYRAVQTS-- 413 (812)
Q Consensus 377 ------------g~~v~~e~i~~i~~li-----------------------------~~~p~l~~~~v~~L~~~l~~~-- 413 (812)
-.+.++..+..++-++ ..+|.+--.--+.+.+.+...
T Consensus 240 VP~LL~vyF~vvl~~ad~sLi~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~ 319 (459)
T PF14764_consen 240 VPVLLQVYFSVVLQDADGSLICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASN 319 (459)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhccccc
Confidence 0233344444444433 223332111111122222211
Q ss_pred -cchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHH---H----Hhcc--------CCCHHHHHHHHH
Q 045023 414 -IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEI---A----IKHH--------SSDITTKAMAMV 477 (812)
Q Consensus 414 -~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~---~----l~~~--------~~~~~vk~~iLt 477 (812)
...+.+..-.+|+||||+.-.-+.. .|.+-+.+++|. + .+.. ..++.+-..++|
T Consensus 320 ~~~k~~l~~hlvWaIGEy~s~~~d~r----------ct~~~i~~~fE~LE~llyE~~~~~~~~~~~~~~~~~rl~~~lmt 389 (459)
T PF14764_consen 320 IHSKEELFTHLVWAIGEYLSVSYDRR----------CTVEQINEFFEALEALLYEVTQSRRDPSASRPSSQPRLMTVLMT 389 (459)
T ss_pred ccchhHHHHHHHHHHhcccccccCCc----------cCHHHHHHHHHHHHHHHHHHhhccccccccCCCCchhHHHHHHH
Confidence 2346788889999999986433221 122333333332 2 1111 124788899999
Q ss_pred HHHHHHccCCCChHHHHHHHHH-------------hhCCCChHHHHHHHHHHHHhccCHHHHHHhhhc
Q 045023 478 ALLKLSSRFPSCSERIRDIIVQ-------------NKGSLVLELQQRSIEFNSIVEKHQNIRSTLVER 532 (812)
Q Consensus 478 Al~KL~~r~p~~~~~i~~ll~~-------------~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~ 532 (812)
|++||++|.++..+|+.-.+.+ +....+..|.+||.||+.|+ +.+.+...+|.+
T Consensus 390 ~laKLAsr~~dl~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LL-k~PsvA~~vL~P 456 (459)
T PF14764_consen 390 ALAKLASRSQDLIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLL-KMPSVAQFVLTP 456 (459)
T ss_pred HHHHHHHhCHhhhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHh-cCchHHHHhcCC
Confidence 9999999999988887755544 33467889999999999999 788899999984
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=98.60 E-value=0.00012 Score=88.41 Aligned_cols=403 Identities=13% Similarity=0.100 Sum_probs=218.2
Q ss_pred HHHHhhccCCCCchhHHH---HHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccC--chhhHHHHHHHHH
Q 045023 72 ECLKSIASAGFPEKRIGY---LGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNIC--SAEMARDLAPEVE 146 (812)
Q Consensus 72 evikli~s~~~~~KRlgY---L~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~--~~e~~~~l~~~V~ 146 (812)
|+-+.+.+.+...||-+. ++.+.+-..-..++.-+++ =+.++|..++-+..-.+.++. .+|++--....+.
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk----~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~ 111 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVK----LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFL 111 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHH
Confidence 334445555544444332 2333333333334443333 445667777766655555553 4888888899999
Q ss_pred HhccCCCcceeccC----------CCchhHHHHHHHHhcCCCCCccccccCCChhHHH-HHHHHHHhcCCCCchhh--hH
Q 045023 147 RLLQFRDPNIRKKP----------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHI-RLLKLLHVLGQGDADAS--DC 213 (812)
Q Consensus 147 ~ll~~~~pyVRKkA----------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv-~lL~lL~~l~~~~~~~~--~~ 213 (812)
+=+.|+||+||--| .+++.++..+++.+.+ .+|+.-- -++-+++.|. .+++.. ..
T Consensus 112 KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D-----------~~pYVRKtAalai~Kly~-~~pelv~~~~ 179 (746)
T PTZ00429 112 QDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD-----------PDPYVRKTAAMGLGKLFH-DDMQLFYQQD 179 (746)
T ss_pred HHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHh-hCcccccccc
Confidence 99999999999888 1233344445555432 3454422 2333333332 233321 12
Q ss_pred HHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHHHH---HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHH
Q 045023 214 MNDILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRVLA---INILGRFLSNRDNNIRYVALNMLMKAITVDAQA 289 (812)
Q Consensus 214 l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~l~---i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~ 289 (812)
+.+.|..++. ..+..|+..|+.++..+... +.-.... +..|...|..-+.=.+...|+.|.+....+..-
T Consensus 180 ~~~~L~~LL~------D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e 253 (746)
T PTZ00429 180 FKKDLVELLN------DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES 253 (746)
T ss_pred hHHHHHHHhc------CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH
Confidence 2233333332 24678999999999988532 2211222 333334444556677888888886654444444
Q ss_pred HHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC---HHHHHHHH---HHHhhhcCHHHHHHHHHHHHHHHhhhCCchh
Q 045023 290 VQRHRATILECVKDLDASIRKRALELVYLLVNESN---VKPLTKEL---IDYLEISDQEFKGDLTAKICSMVEKFSPDKI 363 (812)
Q Consensus 290 v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N---v~~Iv~eL---l~yl~~~d~~~~~~li~~I~~la~k~~~~~~ 363 (812)
.......+..+|+..+..|-..|..+++.+.+..+ ++.++..+ +-+|...+++.+--+++.|..++.+++.-..
T Consensus 254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~ 333 (746)
T PTZ00429 254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLR 333 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHH
Confidence 44555667778888899999999999999986543 23333222 2255567889999999999999988875555
Q ss_pred HHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccch--------------HHHHHHHHHhhhh
Q 045023 364 WYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQ--------------ESLVRVAIWCIGE 429 (812)
Q Consensus 364 w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~--------------~~l~~~~~WiiGE 429 (812)
-+++.++-... ...||....+..+..+.. ++--..++..|.++..+ .+. ..+-.++-||+.-
T Consensus 334 ~~~~~Ff~~~~-Dp~yIK~~KLeIL~~Lan--e~Nv~~IL~EL~eYa~d-~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~ 409 (746)
T PTZ00429 334 TNLDSFYVRYS-DPPFVKLEKLRLLLKLVT--PSVAPEILKELAEYASG-VDMVFVVEVVRAIASLAIKVDSVAPDCANL 409 (746)
T ss_pred HHHHhhhcccC-CcHHHHHHHHHHHHHHcC--cccHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 45554443222 334666666655555432 11122334444443332 110 0111234466555
Q ss_pred cccccccCccccccCCCCccChhhHHHHHHHHHhcc-----------------CCCHHHHHHHHHHHHHHHccCCCChHH
Q 045023 430 YGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH-----------------SSDITTKAMAMVALLKLSSRFPSCSER 492 (812)
Q Consensus 430 Y~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~-----------------~~~~~vk~~iLtAl~KL~~r~p~~~~~ 492 (812)
..+++.+...+ + .+.+..++.+++.+ ...++.|..++.-+.-+....+++.+.
T Consensus 410 Ll~ll~~~~~~--------v--~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~ 479 (746)
T PTZ00429 410 LLQIVDRRPEL--------L--PQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI 479 (746)
T ss_pred HHHHhcCCchh--------H--HHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence 55554332111 1 12333444444321 113455666666666655555555555
Q ss_pred HHHHHHHhhCCCChHHHHH
Q 045023 493 IRDIIVQNKGSLVLELQQR 511 (812)
Q Consensus 493 i~~ll~~~~~s~~~evqqR 511 (812)
+++++..+.. .+.+||--
T Consensus 480 L~~~i~~f~~-E~~~Vqlq 497 (746)
T PTZ00429 480 IQRFIDTIME-HEQRVQLA 497 (746)
T ss_pred HHHHHhhhcc-CCHHHHHH
Confidence 6566655554 45677543
No 18
>PRK09687 putative lyase; Provisional
Probab=98.31 E-value=4.9e-05 Score=81.91 Aligned_cols=228 Identities=13% Similarity=0.074 Sum_probs=131.7
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC-----Cc------hhHHHHHHHHh
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK-----CL------DGLVKTLRDVV 174 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~-----~v------~~lv~~L~~L~ 174 (812)
..+.|.+=|.|+|..+|-.|+..|+.+..++.. +.+.+++.|.++.||+.|- +. ...+..|..++
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVF----RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 345566667888999999999999988876554 4456678888899988871 10 12233333331
Q ss_pred cCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH
Q 045023 175 NSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV 254 (812)
Q Consensus 175 ~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~ 254 (812)
...++|...-.....|..++...........+.+..... +...-|-+.++..+-.+...
T Consensus 100 ----------~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~------D~~~~VR~~a~~aLg~~~~~----- 158 (280)
T PRK09687 100 ----------LEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF------DKSTNVRFAVAFALSVINDE----- 158 (280)
T ss_pred ----------hcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh------CCCHHHHHHHHHHHhccCCH-----
Confidence 123345555556666666554322111112222221111 12445777777777655432
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045023 255 LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELID 334 (812)
Q Consensus 255 l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~ 334 (812)
.++..|..+|.++++.+|+-|...|..+-..+|.++. .++..|.|.|..+|..|+.-|-.+-++ ..++-|+.
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~----~L~~~L~D~~~~VR~~A~~aLg~~~~~----~av~~Li~ 230 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIRE----AFVAMLQDKNEEIRIEAIIGLALRKDK----RVLSVLIK 230 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHH----HHHHHhcCCChHHHHHHHHHHHccCCh----hHHHHHHH
Confidence 2566777777777777888888777777333454432 245566777778888777777765554 45555555
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHh
Q 045023 335 YLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLS 374 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~ 374 (812)
++...+ ++..++.+++.+... -.+..|.+++.
T Consensus 231 ~L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~ 262 (280)
T PRK09687 231 ELKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLY 262 (280)
T ss_pred HHcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence 555433 555555555555432 24444555444
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.30 E-value=0.0033 Score=82.19 Aligned_cols=284 Identities=12% Similarity=0.109 Sum_probs=180.1
Q ss_pred cchHHHHHHHHHHhcCC-ChhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH---HHHH--hHhhhccc
Q 045023 232 GNAILYECVETIMSIED-NGGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQ---AVQR--HRATILEC 300 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~-~~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~---~v~~--h~~~i~~c 300 (812)
+.-+.-+++..+..+.. +.+.+. .++..|.+||.+.+.++|..|+..|..+...+.+ ++-. -...++.+
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 34566677777666653 233222 2578899999999999999999999888865543 2222 23557788
Q ss_pred ccccCHhHHHHHHHHHHHhc-CCCCHHHHH------HHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 045023 301 VKDLDASIRKRALELVYLLV-NESNVKPLT------KELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVL 373 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~-n~~Nv~~Iv------~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL 373 (812)
|..++..+|+.|.-.|..++ ++.|++.++ +-|++.+...+.+.+..++.+|+.++..- ....+..+..+|
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~---d~~~I~~Lv~LL 573 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA---DAATISQLTALL 573 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc---chhHHHHHHHHh
Confidence 99999999999999999998 466777766 35778888889999999999999997542 223567777877
Q ss_pred hhcCccchHHHHHHHHHHHHhCC--C-cH-----HHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCC
Q 045023 374 SEAGNFVKDEVWHALIVVISNAS--D-LH-----GYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIED 445 (812)
Q Consensus 374 ~~~g~~v~~e~i~~i~~li~~~p--~-l~-----~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~ 445 (812)
...+..+...++..+-.++.-.. + .+ ..++..|.+.+.. ..+..++.++|+|+.|+..-.+...
T Consensus 574 lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s--gs~~ikk~Aa~iLsnL~a~~~d~~~------ 645 (2102)
T PLN03200 574 LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS--SKEETQEKAASVLADIFSSRQDLCE------ 645 (2102)
T ss_pred cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCChHHHH------
Confidence 76665444444444433433111 1 11 2367788887774 3456788999999999864221100
Q ss_pred CCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC-CChHH-----HHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 446 PITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP-SCSER-----IRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 446 ~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p-~~~~~-----i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
.+-..+.+.-+-.++.. .+..++...-.|+.-++.-.. +.... +...|-...++.|.++.+-|.+-..-+
T Consensus 646 --avv~agaIpPLV~LLss--~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL 721 (2102)
T PLN03200 646 --SLATDEIINPCIKLLTN--NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721 (2102)
T ss_pred --HHHHcCCHHHHHHHHhc--CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 01111223333334443 346677777777777774221 11111 112233333567889999999886665
Q ss_pred ccCHHHHHHhh
Q 045023 520 EKHQNIRSTLV 530 (812)
Q Consensus 520 ~~~~~~~~~ll 530 (812)
-++++.+..+.
T Consensus 722 l~~~e~~~ei~ 732 (2102)
T PLN03200 722 LSDPEVAAEAL 732 (2102)
T ss_pred HcCchHHHHHH
Confidence 56665555444
No 20
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=9.3e-05 Score=86.21 Aligned_cols=293 Identities=18% Similarity=0.199 Sum_probs=185.2
Q ss_pred cccCCChhHHHHHHHHHHhcCCCCchhh--------hHHHHHHHHHhhccc-c-CCCCcchHHHHHHHHHHhcCCChhHH
Q 045023 184 IAGITDPFLHIRLLKLLHVLGQGDADAS--------DCMNDILAQVATKTE-S-NKNAGNAILYECVETIMSIEDNGGLR 253 (812)
Q Consensus 184 ~~~~~dpwlqv~lL~lL~~l~~~~~~~~--------~~l~diL~~v~~~~~-~-~kn~~~aVl~e~v~~i~~i~~~~~L~ 253 (812)
+.|.+.-|+|++.|+++..=.-.+++.. ++=.|++.. .+|+- . .++.+.=|+--|..++..+.+.+-.|
T Consensus 63 MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllL-ltNslknDL~s~nq~vVglAL~alg~i~s~Emar 141 (866)
T KOG1062|consen 63 MLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL-LTNSLKNDLNSSNQYVVGLALCALGNICSPEMAR 141 (866)
T ss_pred HhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH-HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhH
Confidence 4789999999999999964333333320 111133322 22220 0 11223334444444555555444344
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELI 333 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl 333 (812)
.+ ..-+-++|.+.++++|=-|.-+..++..+.|+.++.+....-..|.|.+.-|=...+.+++.||..+- +.+
T Consensus 142 dl-apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~------~~l 214 (866)
T KOG1062|consen 142 DL-APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP------DAL 214 (866)
T ss_pred Hh-hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH------HHH
Confidence 43 45566888999999999999999999999999999888877788899998888899999999887653 555
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHh-hhCCchh-------HHHHHHHHHHhhcCc---cchHHHHHHHHHHHHhCCCcH--H
Q 045023 334 DYLEISDQEFKGDLTAKICSMVE-KFSPDKI-------WYIDQMLKVLSEAGN---FVKDEVWHALIVVISNASDLH--G 400 (812)
Q Consensus 334 ~yl~~~d~~~~~~li~~I~~la~-k~~~~~~-------w~vd~ll~lL~~~g~---~v~~e~i~~i~~li~~~p~l~--~ 400 (812)
.|.++ ....+++.+-.++. +|+|.+. |.=--++++|..=|. ..++---..+-++.++...-+ .
T Consensus 215 ~~fr~----l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 215 SYFRD----LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHH----HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 66554 56666777777765 3654332 433334455554332 233322333333444433221 1
Q ss_pred H-HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 045023 401 Y-TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVAL 479 (812)
Q Consensus 401 ~-~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl 479 (812)
+ ++...+..+.+-....+++..++-|+|.|-- + .+..+|-..|+++
T Consensus 291 nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~-------------------------------n--~d~NirYvaLn~L 337 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNSGLRVLAINILGKFLL-------------------------------N--RDNNIRYVALNML 337 (866)
T ss_pred hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc-------------------------------C--CccceeeeehhhH
Confidence 2 2222222222222345567777777777621 1 1345666889999
Q ss_pred HHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhcc
Q 045023 480 LKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEK 521 (812)
Q Consensus 480 ~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~ 521 (812)
+|+-..-|...++=+..+-.|..|.|.-||-||.|..-.+-.
T Consensus 338 ~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 338 LRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 999988888888888999999999999999999998877753
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.25 E-value=8.4e-05 Score=92.80 Aligned_cols=270 Identities=17% Similarity=0.182 Sum_probs=185.5
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCc---c
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPE---Y 182 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe---~ 182 (812)
.++.|..-|.|+++.||-.|+..|+.+..++. .+.+.+.|.|.++.||..| +..|.++... ..+. -
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~----~~~L~~aL~D~d~~VR~~A------a~aL~~l~~~-~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGF----GPALVAALGDGAAAVRRAA------AEGLRELVEV-LPPAPALR 690 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhH----HHHHHHHHcCCCHHHHHHH------HHHHHHHHhc-cCchHHHH
Confidence 34667778899999999999999999998764 4556678899999999987 2222222110 0000 0
Q ss_pred ccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 045023 183 DIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGR 262 (812)
Q Consensus 183 ~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~ 262 (812)
......||+.....++.|..+...++. .|.+.+ ++....|-.++++.+-.+...+ .|..
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~~~~~-------~l~~~L------~D~d~~VR~~Av~aL~~~~~~~--------~l~~ 749 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRAGDAA-------LFAAAL------GDPDHRVRIEAVRALVSVDDVE--------SVAG 749 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhccCCHH-------HHHHHh------cCCCHHHHHHHHHHHhcccCcH--------HHHH
Confidence 122336889999999999877644321 222222 2346789999999988875443 2446
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHH
Q 045023 263 FLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQE 342 (812)
Q Consensus 263 fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~ 342 (812)
++.+.++.+|..+...|..+-...+..+ ..+..+++|+|..||..|++.|-.+.++.. ++..|...+.+.|..
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~~~~~----~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---~~~~l~~aL~d~d~~ 822 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGGAPAG----DAVRALTGDPDPLVRAAALAALAELGCPPD---DVAAATAALRASAWQ 822 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccccchhH----HHHHHHhcCCCHHHHHHHHHHHHhcCCcch---hHHHHHHHhcCCChH
Confidence 7888999999999999988865544332 234567899999999999999998877643 344577788888899
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHH
Q 045023 343 FKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRV 422 (812)
Q Consensus 343 ~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~ 422 (812)
+|..++.+++.+.. .-.++.|+.+|......|..+++..+-.+ . ....++..|...+.+. + ..+.+.
T Consensus 823 VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~----~~~~a~~~L~~al~D~-d-~~Vr~~ 889 (897)
T PRK13800 823 VRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW-P----GDPAARDALTTALTDS-D-ADVRAY 889 (897)
T ss_pred HHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc-C----CCHHHHHHHHHHHhCC-C-HHHHHH
Confidence 99999999987541 23568899999888778888888777664 1 1223445555666642 2 234555
Q ss_pred HHHhh
Q 045023 423 AIWCI 427 (812)
Q Consensus 423 ~~Wii 427 (812)
+.+-+
T Consensus 890 A~~aL 894 (897)
T PRK13800 890 ARRAL 894 (897)
T ss_pred HHHHH
Confidence 55544
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.24 E-value=0.00078 Score=87.77 Aligned_cols=403 Identities=14% Similarity=0.119 Sum_probs=228.4
Q ss_pred HHhhccCCCCchhHHHHHHHHhcccchhHHHH-----HHHHHHhhcCCCCHhHHHHHHHHHhccCc--hhhHH-----HH
Q 045023 74 LKSIASAGFPEKRIGYLGLMLLLDERQEVLML-----VTNSLKQDLNHTNQYIVGLALCALGNICS--AEMAR-----DL 141 (812)
Q Consensus 74 ikli~s~~~~~KRlgYL~~~~ll~~~~el~~L-----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--~e~~~-----~l 141 (812)
|.|+.+.+...+.=+-.++..+.+.+.|..-. .+..|-+-|.|+++.++-.|++++++|.. .+-.. ..
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 34444555555555555656666555554222 45677777888888888888888888853 33222 24
Q ss_pred HHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhH------HH
Q 045023 142 APEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDC------MN 215 (812)
Q Consensus 142 ~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~------l~ 215 (812)
+|.+.++|.++++.+|+.| +-.|-++ +..+++.... +.
T Consensus 490 IP~LV~LL~s~~~~iqeeA------awAL~NL------------------------------a~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDS------ATVLWNL------------------------------CCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHH------HHHHHHH------------------------------hCCcHHHHHHHHHCCCHH
Confidence 7777777777777777665 1122222 1111111000 10
Q ss_pred HHHHHHhhccccCCCCcchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC--HHHHH
Q 045023 216 DILAQVATKTESNKNAGNAILYECVETIMSIED--NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD--AQAVQ 291 (812)
Q Consensus 216 diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~--~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~--p~~v~ 291 (812)
.++ .++.+ ...-+.-+++.++..+.. +.. .+..|..+|.+.+++++-.+++.|..++..- .+.++
T Consensus 534 pLV-~LL~s------gd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 534 ALL-WLLKN------GGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHH-HHHhC------CCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 111 11111 112334455555555422 222 2355666788888999999999887775421 11111
Q ss_pred ------HhHhhhcccccccCHhHHHHHHHHHHHhcCCC--CHH-----HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhh
Q 045023 292 ------RHRATILECVKDLDASIRKRALELVYLLVNES--NVK-----PLTKELIDYLEISDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 292 ------~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~--Nv~-----~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~ 358 (812)
.-...+..+|++++..+|+.|..+|..++..+ ++. ..+.-|+..+...+.+.++++..+|+.++.-.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 23456778899999999999999999998633 333 34567888888899999999999999998532
Q ss_pred CCchhH------HHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhhccchHHHHHHHHHhhh
Q 045023 359 SPDKIW------YIDQMLKVLSEAGNFVKDEVWHALIVVISNASD----LHGYTVRALYRAVQTSIEQESLVRVAIWCIG 428 (812)
Q Consensus 359 ~~~~~w------~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~----l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiG 428 (812)
...... ++..|+++|+.....+.+.....+-.++..... ....++..|.+.+++. ...-+.-++|.+.
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG--TLEGKRNAARALA 760 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHH
Confidence 222222 467799999887777888888777777654322 1235577888888853 3345788889887
Q ss_pred hcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcc-----C-----------CCChHH
Q 045023 429 EYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSR-----F-----------PSCSER 492 (812)
Q Consensus 429 EY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r-----~-----------p~~~~~ 492 (812)
+-+..-.-... ....+.....+.-|-.+|+........-...|.+++-++-. + |+..+.
T Consensus 761 ~L~~~~~~~~~-----~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~ 835 (2102)
T PLN03200 761 QLLKHFPVDDV-----LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEP 835 (2102)
T ss_pred HHHhCCChhHH-----HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHH
Confidence 76643210000 00001111222223344444222222222344444433321 1 222222
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHH-HHhccCHHHHHHhhhcCC
Q 045023 493 IRDIIVQNKGSLVLELQQRSIEFN-SIVEKHQNIRSTLVERMP 534 (812)
Q Consensus 493 i~~ll~~~~~s~~~evqqRA~ey~-~Ll~~~~~~~~~ll~~mP 534 (812)
|-.|..+.++++|++|.|.. +|+...+.+.-.++..-|
T Consensus 836 ----l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~ 874 (2102)
T PLN03200 836 ----LVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANAS 874 (2102)
T ss_pred ----HHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhccc
Confidence 22344788999999999965 445433444444444444
No 23
>PRK09687 putative lyase; Provisional
Probab=98.19 E-value=0.00022 Score=76.83 Aligned_cols=237 Identities=11% Similarity=0.022 Sum_probs=165.8
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC---HHHHHHhHhhhcc-cccccCH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD---AQAVQRHRATILE-CVKDLDA 306 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~---p~~v~~h~~~i~~-cL~d~D~ 306 (812)
.+.-|-++++..+-.+.... +...+.+++.+.|+.+|..+...|..+-... +.++. .+.. .++|+|.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-----~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~----~L~~l~~~D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-----VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFN----ILNNLALEDKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-----HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHH----HHHHHHhcCCCH
Confidence 45668899999988776542 3455667788999999999999999886432 12222 2222 3689999
Q ss_pred hHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHH
Q 045023 307 SIRKRALELVYLLVNESN--VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEV 384 (812)
Q Consensus 307 sIr~~aLell~~l~n~~N--v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~ 384 (812)
.||..|...|-.++.... ....+..+...+.+.+...|..++.+++.+. + .-.++.|+.+|......|....
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~-~~ai~~L~~~L~d~~~~VR~~A 179 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----D-EAAIPLLINLLKDPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----C-HHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999976654 2456677777788888999999999997653 2 3488999999998877777777
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhc
Q 045023 385 WHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKH 464 (812)
Q Consensus 385 i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~ 464 (812)
+..+-.+ +.-...++..|...+.+ ....++..++|-+|+.++. .++..|...+++
T Consensus 180 ~~aLg~~----~~~~~~~~~~L~~~L~D--~~~~VR~~A~~aLg~~~~~-------------------~av~~Li~~L~~ 234 (280)
T PRK09687 180 AFALNSN----KYDNPDIREAFVAMLQD--KNEEIRIEAIIGLALRKDK-------------------RVLSVLIKELKK 234 (280)
T ss_pred HHHHhcC----CCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHccCCh-------------------hHHHHHHHHHcC
Confidence 7666655 11123466677777764 3456789999999998763 355556556653
Q ss_pred cCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHH
Q 045023 465 HSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFN 516 (812)
Q Consensus 465 ~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~ 516 (812)
..++..+..|+..+... +.+-.+.+....+.|.+++.+|.|-.
T Consensus 235 ----~~~~~~a~~ALg~ig~~-----~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 235 ----GTVGDLIIEAAGELGDK-----TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ----CchHHHHHHHHHhcCCH-----hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 33666777777776542 22222333333477999999998754
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.00 E-value=0.00043 Score=86.51 Aligned_cols=271 Identities=17% Similarity=0.150 Sum_probs=140.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhh
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQD 113 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kD 113 (812)
...+...|.++++..|+.++.-|-.+. . .......++++..++...|+..--++..+.+..+.. ..+.+=
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~---~--~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-----~~L~~~ 692 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT---P--PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-----PALRDH 692 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc---c--hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-----HHHHHH
Confidence 346667777778888877766655432 1 112334455665555555554333333332211111 122233
Q ss_pred cCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCcc--ccccCCChh
Q 045023 114 LNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEY--DIAGITDPF 191 (812)
Q Consensus 114 L~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~--~~~~~~dpw 191 (812)
|.++++.+|..|+..|+.+...+. ..+.+.|.|.++.||+.| +..|..+- .++. ......+|.
T Consensus 693 L~~~d~~VR~~A~~aL~~~~~~~~-----~~l~~~L~D~d~~VR~~A------v~aL~~~~----~~~~l~~~l~D~~~~ 757 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRALRAGDA-----ALFAAALGDPDHRVRIEA------VRALVSVD----DVESVAGAATDENRE 757 (897)
T ss_pred hcCCCHHHHHHHHHHHHhhccCCH-----HHHHHHhcCCCHHHHHHH------HHHHhccc----CcHHHHHHhcCCCHH
Confidence 456788888888888887754332 234567788888888776 11111110 0000 012334556
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcch
Q 045023 192 LHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNI 271 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~ni 271 (812)
......+.|..++..++... +.|..++. .....|...++..+-.+.....+ +..+...|.+.+..+
T Consensus 758 VR~~aa~aL~~~~~~~~~~~----~~L~~ll~------D~d~~VR~aA~~aLg~~g~~~~~----~~~l~~aL~d~d~~V 823 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAG----DAVRALTG------DPDPLVRAAALAALAELGCPPDD----VAAATAALRASAWQV 823 (897)
T ss_pred HHHHHHHHHHHhccccchhH----HHHHHHhc------CCCHHHHHHHHHHHHhcCCcchh----HHHHHHHhcCCChHH
Confidence 66666666665554332211 12222222 12355666666666655443221 233455566666667
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 045023 272 RYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKI 351 (812)
Q Consensus 272 ryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I 351 (812)
|..|+..|..+-. +..+ ..+..+|+|+|..+|+.|+..|-.+-... ...+.|..-+.+.|.++|+.+..++
T Consensus 824 R~~Aa~aL~~l~~--~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~~~~---~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 824 RQGAARALAGAAA--DVAV----PALVEALTDPHLDVRKAAVLALTRWPGDP---AARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred HHHHHHHHHhccc--cchH----HHHHHHhcCCCHHHHHHHHHHHhccCCCH---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777777665532 2222 33455667777777777777776652222 2333334455566666776666665
Q ss_pred H
Q 045023 352 C 352 (812)
Q Consensus 352 ~ 352 (812)
.
T Consensus 895 ~ 895 (897)
T PRK13800 895 A 895 (897)
T ss_pred h
Confidence 3
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.86 E-value=0.00035 Score=70.23 Aligned_cols=160 Identities=17% Similarity=0.238 Sum_probs=107.9
Q ss_pred CcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhhhcCHHHH
Q 045023 268 DNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVK---PLTKELIDYLEISDQEFK 344 (812)
Q Consensus 268 d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~---~Iv~eLl~yl~~~d~~~~ 344 (812)
++.+|--++-.|..++.++|+.+.+|...++.||.|+++.+|+.|+-++..|+.++-++ .++.+++..+.+.|+++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 46788899999999999999999999999999999999999999999999999886643 344777777788899999
Q ss_pred HHHHHHHHHHHhhhCCc-h-hHHHHHHHHHHhhcCc----cchHHHHHHHHH-HHHhCC--CcHHHHHHHHHHHHhhcc-
Q 045023 345 GDLTAKICSMVEKFSPD-K-IWYIDQMLKVLSEAGN----FVKDEVWHALIV-VISNAS--DLHGYTVRALYRAVQTSI- 414 (812)
Q Consensus 345 ~~li~~I~~la~k~~~~-~-~w~vd~ll~lL~~~g~----~v~~e~i~~i~~-li~~~p--~l~~~~v~~L~~~l~~~~- 414 (812)
..+...+..+..+..++ . .-..+.+..+-...+. ....+--..+.+ ++..-+ +.+...+.+|+.-+....
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~~ 160 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAVV 160 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999884333 2 2233333322221111 122222222222 333333 345567777777666433
Q ss_pred -chHHHHHHHHHhh
Q 045023 415 -EQESLVRVAIWCI 427 (812)
Q Consensus 415 -~~~~l~~~~~Wii 427 (812)
..+...+-+++|+
T Consensus 161 ~~~~~~~~d~~~~l 174 (178)
T PF12717_consen 161 DEDERVLRDILYCL 174 (178)
T ss_pred cccHHHHHHHHHHH
Confidence 1334445555554
No 26
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.49 E-value=0.0076 Score=71.72 Aligned_cols=274 Identities=16% Similarity=0.239 Sum_probs=175.4
Q ss_pred HHHHHcCCC-CCChhHHHHHhhccCCCCch-----hHHHHHHHH----hcccchhHHHHHHHHHHhhcC--CCCHhHHHH
Q 045023 57 MFIHMLGYP-THFGQMECLKSIASAGFPEK-----RIGYLGLML----LLDERQEVLMLVTNSLKQDLN--HTNQYIVGL 124 (812)
Q Consensus 57 iyl~~lG~~-~~~~~~evikli~s~~~~~K-----RlgYL~~~~----ll~~~~el~~L~~Nsl~kDL~--s~n~~i~~l 124 (812)
.|...-+.+ .++.++..+.++..+-++.- |=+|..+.. +....|+-.-=++-.+.+|+. ++|.-++-+
T Consensus 759 ~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvf 838 (1233)
T KOG1824|consen 759 FFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVF 838 (1233)
T ss_pred HHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHH
Confidence 333333333 34557888888887777532 233333222 222334444445557778887 457889999
Q ss_pred HHHHHhccCc---hhhHHHHHHHHHHhccCCCcceeccCC------Cc---hhHHHHHHHHhcCCCCCccccccCCChhH
Q 045023 125 ALCALGNICS---AEMARDLAPEVERLLQFRDPNIRKKPK------CL---DGLVKTLRDVVNSPYAPEYDIAGITDPFL 192 (812)
Q Consensus 125 AL~~Ls~I~~---~e~~~~l~~~V~~ll~~~~pyVRKkA~------~v---~~lv~~L~~L~~~~~~pe~~~~~~~dpwl 192 (812)
|+-++|.++- ..-.+.+...|.+.+++++.-|+++|. .+ +..+..+.+.+. .+|.-
T Consensus 839 a~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~------------sqpk~ 906 (1233)
T KOG1824|consen 839 ALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIE------------SQPKR 906 (1233)
T ss_pred HHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHh------------cchHh
Confidence 9999998843 333566777889999999999999982 12 223333222222 24444
Q ss_pred HHHHHHHHHhcC---CCC--chhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCC
Q 045023 193 HIRLLKLLHVLG---QGD--ADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNR 267 (812)
Q Consensus 193 qv~lL~lL~~l~---~~~--~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~ 267 (812)
|--+|.-|...- ..+ ....+++.++|-+=+ +..+-....|+-||.--+..+++++- ...|...+.+.
T Consensus 907 QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~c---E~~eegtR~vvAECLGkL~l~epesL-----lpkL~~~~~S~ 978 (1233)
T KOG1824|consen 907 QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHC---ECAEEGTRNVVAECLGKLVLIEPESL-----LPKLKLLLRSE 978 (1233)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhc---ccchhhhHHHHHHHhhhHHhCChHHH-----HHHHHHHhcCC
Confidence 555555554321 112 223455656554333 33333446799999988877776643 34566678899
Q ss_pred CcchHHHHHHHHHHHHhhCHH----HHHHhHhhhcccccccCHhHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHhhhcCH
Q 045023 268 DNNIRYVALNMLMKAITVDAQ----AVQRHRATILECVKDLDASIRKRALELVYLLV-NESN-VKPLTKELIDYLEISDQ 341 (812)
Q Consensus 268 d~niryvaL~~L~~l~~~~p~----~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~-n~~N-v~~Iv~eLl~yl~~~d~ 341 (812)
+++.|-.++..+...+.-+|. .+++....++..++|+|..+||.||-.+-.-+ |.-+ ++.+++||+-.+-. ..
T Consensus 979 a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~-eT 1057 (1233)
T KOG1824|consen 979 ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYS-ET 1057 (1233)
T ss_pred CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHH-hh
Confidence 999999999988877776653 45667778999999999999999999887554 3333 78888888887643 34
Q ss_pred HHHHHHHHHH
Q 045023 342 EFKGDLTAKI 351 (812)
Q Consensus 342 ~~~~~li~~I 351 (812)
.+|+++|+.+
T Consensus 1058 kvrkelIreV 1067 (1233)
T KOG1824|consen 1058 KVRKELIREV 1067 (1233)
T ss_pred hhhHhhhhhh
Confidence 5677766654
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.48 E-value=0.015 Score=67.99 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=161.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHH
Q 045023 238 ECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRA 312 (812)
Q Consensus 238 e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~a 312 (812)
++++.++.-.....+.......|.+.|.+.++.+|-.+++.|.+++......++. -...|+.|+.|+|.++...|
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A 139 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAA 139 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHH
Confidence 3344444433333444556778888899999999999999999998766543332 23557899999999999999
Q ss_pred HHHHHHhcCCCC-HHHH-----HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch--hH---HHHHHHHHHhhcCccch
Q 045023 313 LELVYLLVNESN-VKPL-----TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK--IW---YIDQMLKVLSEAGNFVK 381 (812)
Q Consensus 313 Lell~~l~n~~N-v~~I-----v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~--~w---~vd~ll~lL~~~g~~v~ 381 (812)
.++|..|+.... ...+ +.+|...+...+...|-.+..-+..++..-+... -| .++.+++.|....-.+.
T Consensus 140 ~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvq 219 (503)
T PF10508_consen 140 IKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQ 219 (503)
T ss_pred HHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHH
Confidence 999999986554 4445 5667777766677788777777777764322111 12 56667766666433455
Q ss_pred HHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHhhccchHHHHHHHHHhhhh---cccccc-cCccccccCCCCccChh
Q 045023 382 DEVWHALIVVISNASDLHG-----YTVRALYRAVQTSIEQESLVRVAIWCIGE---YGDMLV-NNVGVLNIEDPITVTES 452 (812)
Q Consensus 382 ~e~i~~i~~li~~~p~l~~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGE---Y~~~l~-~~~~~~~~~~~~~v~~~ 452 (812)
-.++..+.++.. .+.-.. .++.+|+..+.+.... + ....+.+.|. ||++.. .+..+.. .-.
T Consensus 220 lnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~d-p-~~~~~~l~g~~~f~g~la~~~~~~v~~-------~~p 289 (503)
T PF10508_consen 220 LNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEED-P-RLSSLLLPGRMKFFGNLARVSPQEVLE-------LYP 289 (503)
T ss_pred HHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccC-C-cccchhhhhHHHHHHHHHhcChHHHHH-------HHH
Confidence 566655666655 554333 3566777777643222 1 1222333332 344332 1111100 001
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC-------ChHHHHHHHH---HhhCCCChHHHHHHHHHHHHh
Q 045023 453 DAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS-------CSERIRDIIV---QNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 453 ~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~-------~~~~i~~ll~---~~~~s~~~evqqRA~ey~~Ll 519 (812)
.+++.+...+. ..+...+..++-++.-+.....+ ..+.+..++. .+..+...|+|-|+..-+..+
T Consensus 290 ~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 290 AFLERLFSMLE--SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 22222222222 23577788888888877754321 1233334444 445677789999999876665
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.06 Score=62.29 Aligned_cols=399 Identities=18% Similarity=0.200 Sum_probs=218.5
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC----------------CCchhHHHHHHHHhcCCCCCc----
Q 045023 122 VGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP----------------KCLDGLVKTLRDVVNSPYAPE---- 181 (812)
Q Consensus 122 ~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA----------------~~v~~lv~~L~~L~~~~~~pe---- 181 (812)
-+.||-.|+|+-..++.+.++|.+++.|.+..+.||-.+ ...|.++..|-.++.++..+-
T Consensus 375 SAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 375 SAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 467899999999999999999999999999999998777 345667777777776554322
Q ss_pred ------c---ccccCCChhHHHHHHHHHHhcCCCCchh---------------hhHHHHHHHHHhhccc----cCCCCcc
Q 045023 182 ------Y---DIAGITDPFLHIRLLKLLHVLGQGDADA---------------SDCMNDILAQVATKTE----SNKNAGN 233 (812)
Q Consensus 182 ------~---~~~~~~dpwlqv~lL~lL~~l~~~~~~~---------------~~~l~diL~~v~~~~~----~~kn~~~ 233 (812)
| -+....+.++.=.+-.+|+++-.++... .+++...|..++++.. --+..+-
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 1 1112233444444444555554433321 1233333333333211 0112345
Q ss_pred hHHHHHHHHHHhc---C-CChhHHHHHHHHHH---HhhcCCCcchHHHHHHHHHHHHhh--------CHHHHHHhHhhhc
Q 045023 234 AILYECVETIMSI---E-DNGGLRVLAINILG---RFLSNRDNNIRYVALNMLMKAITV--------DAQAVQRHRATIL 298 (812)
Q Consensus 234 aVl~e~v~~i~~i---~-~~~~L~~l~i~~L~---~fL~~~d~niryvaL~~L~~l~~~--------~p~~v~~h~~~i~ 298 (812)
-|+|.||.++-.- . .++.-.+..+.+|. ..|++.|.++ |--|++|..++.. -+..++|....+-
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQ 613 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 7999999998642 1 12222233333333 2466777765 6667888777643 2345555544333
Q ss_pred cccc-----c-------cCHhHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 045023 299 ECVK-----D-------LDASIRKRALELVYLLV-----------NESNVKPLTKELIDYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 299 ~cL~-----d-------~D~sIr~~aLell~~l~-----------n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la 355 (812)
.|+. + +|...--.+||++..|+ -.+| |.+-|+..+.+.-+|+|..+..-+|.++
T Consensus 614 ~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~sn---l~~lll~C~~D~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 614 KTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSN---LLDLLLQCLQDEVPEVRQSAFALLGDLT 690 (885)
T ss_pred HHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhcc---HHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3322 1 22233346788887764 3445 4455566777777899999999999998
Q ss_pred hhhCCchhHHHHHHHHHHhhc--Ccc--c-hHHHHHHHHHHHH-hCCCcHH---HHHHHHHHHHhhccchHHHHHHHHHh
Q 045023 356 EKFSPDKIWYIDQMLKVLSEA--GNF--V-KDEVWHALIVVIS-NASDLHG---YTVRALYRAVQTSIEQESLVRVAIWC 426 (812)
Q Consensus 356 ~k~~~~~~w~vd~ll~lL~~~--g~~--v-~~e~i~~i~~li~-~~p~l~~---~~v~~L~~~l~~~~~~~~l~~~~~Wi 426 (812)
.-+.+--.=+++-++.+|... +.+ + ...+| .+-.+-. -..+.+. -++..|+..+.....+..+.--.+-.
T Consensus 691 k~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~W-AiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAIT 769 (885)
T KOG2023|consen 691 KACFEHVIPNLADFLPILGANLNPENISVCNNAIW-AIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAIT 769 (885)
T ss_pred HHHHHhccchHHHHHHHHhhcCChhhchHHHHHHH-HHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhh
Confidence 664432222333344444322 222 2 22333 3333322 2233333 34566666666555566666667777
Q ss_pred hhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCC----hHHHHHHHHHhhC
Q 045023 427 IGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSC----SERIRDIIVQNKG 502 (812)
Q Consensus 427 iGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~----~~~i~~ll~~~~~ 502 (812)
||..|....... .|. -+.+++-.-..++ ...+.+.|...-..++++....|.. ...+-..+..+.
T Consensus 770 IGrLg~~~Pe~v------Ap~---l~~f~~pWc~sl~-~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~- 838 (885)
T KOG2023|consen 770 IGRLGYICPEEV------APH---LDSFMRPWCTSLR-NIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS- 838 (885)
T ss_pred hhhhhccCHHhc------chh---HHHHHHHHHHHhc-ccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc-
Confidence 888776532110 000 0111111111111 1235788888888888888888752 223445555555
Q ss_pred CCChHHHHHHHHHHHHhccCHHHH-----HHhhhcCCCCccc
Q 045023 503 SLVLELQQRSIEFNSIVEKHQNIR-----STLVERMPVLDEA 539 (812)
Q Consensus 503 s~~~evqqRA~ey~~Ll~~~~~~~-----~~ll~~mP~~~~~ 539 (812)
+..-++|| |+..+|.++.+.. +...+..||....
T Consensus 839 np~~~l~~---~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~e 877 (885)
T KOG2023|consen 839 NPEDDLRD---EFYKILQGFKNQVGKINWQRFSEQFPPPLKE 877 (885)
T ss_pred ChHHHHHH---HHHHHHHHHHHHhhhhhHHHHhhcCChhHHH
Confidence 33356666 7777775443322 3345666665443
No 29
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0062 Score=70.68 Aligned_cols=225 Identities=16% Similarity=0.221 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 045023 274 VALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVN--ESNVKPLTKELIDYLEISDQEFKGDLTAKI 351 (812)
Q Consensus 274 vaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n--~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I 351 (812)
+||..|..++ .|++-..-...++-+|...-+|||+||+-++|+++- ++-++.-.+.|.+-|++.|+.+...++.-|
T Consensus 128 iAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VI 205 (877)
T KOG1059|consen 128 LALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVI 205 (877)
T ss_pred heeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHH
Confidence 3444444443 233333333445556666666777777766666542 344555555666666666777777777777
Q ss_pred HHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhccchHHHHHHHHHhh
Q 045023 352 CSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN----ASDLHGYTVRALYRAVQTSIEQESLVRVAIWCI 427 (812)
Q Consensus 352 ~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~----~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~Wii 427 (812)
|.+|.|-|.++--.--.++++|....+- =++..++.+... .|.+....+..|.+.++.. ..-.++--|+-++
T Consensus 206 CELArKnPknyL~LAP~ffkllttSsNN---WmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT-~AmSLlYECvNTV 281 (877)
T KOG1059|consen 206 CELARKNPQNYLQLAPLFYKLLVTSSNN---WVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST-VAMSLLYECVNTV 281 (877)
T ss_pred HHHHhhCCcccccccHHHHHHHhccCCC---eehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh-HHHHHHHHHHHHh
Confidence 7777766555444444455555554321 112223333332 3445555555555555431 1111111111111
Q ss_pred hhcccccccCccccccCCCCccChhhHH----HHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCC
Q 045023 428 GEYGDMLVNNVGVLNIEDPITVTESDAV----DVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGS 503 (812)
Q Consensus 428 GEY~~~l~~~~~~~~~~~~~~v~~~~vi----~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s 503 (812)
=- +.+..+.+. .+.-+ .-|+.++.. .++..|-..|.|+.|+...-|.....-.+++-.|..|
T Consensus 282 Va-~s~s~g~~d-----------~~asiqLCvqKLr~fied--sDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~D 347 (877)
T KOG1059|consen 282 VA-VSMSSGMSD-----------HSASIQLCVQKLRIFIED--SDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDD 347 (877)
T ss_pred ee-ehhccCCCC-----------cHHHHHHHHHHHhhhhhc--CCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhcc
Confidence 00 011111100 11122 223333332 3578899999999999999998878888899999999
Q ss_pred CChHHHHHHHHHHHH
Q 045023 504 LVLELQQRSIEFNSI 518 (812)
Q Consensus 504 ~~~evqqRA~ey~~L 518 (812)
.|.-||-||.....=
T Consensus 348 kD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 348 KDESIRLRALDLLYG 362 (877)
T ss_pred CCchhHHHHHHHHHH
Confidence 999999999986543
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.17 Score=57.68 Aligned_cols=345 Identities=17% Similarity=0.182 Sum_probs=198.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHccCChHHHH-HHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHH---HHHhcc
Q 045023 22 TAAEERAVVRKECAAIRAAINENDQDYRH-RNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLG---LMLLLD 97 (812)
Q Consensus 22 t~~eEr~~i~~E~a~Ir~~l~~~~~~~r~-~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~---~~~ll~ 97 (812)
...|.|+.-.-|+.++-+.+.+.+.+.|. +.+..|+-=++...+. ..+|-|.++ +.+-+-
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~----------------n~rkGgLiGlAA~~iaLg 75 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA----------------NMRKGGLIGLAAVAIALG 75 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc----------------ccccchHHHHHHHHHHhc
Confidence 35678888888998888887777555554 4444455433333322 222222221 111111
Q ss_pred c-chhHHHHHHHHHHhhcCCCCHhH---HHHHHHHHhccCchhhH---HHHHHHHHHhccCCCcceeccCCCchhHHHHH
Q 045023 98 E-RQEVLMLVTNSLKQDLNHTNQYI---VGLALCALGNICSAEMA---RDLAPEVERLLQFRDPNIRKKPKCLDGLVKTL 170 (812)
Q Consensus 98 ~-~~el~~L~~Nsl~kDL~s~n~~i---~~lAL~~Ls~I~~~e~~---~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L 170 (812)
. +...+--++--+..-+++++-.+ .|-+|--++.++-.++. +.++....++..+++..||-.|..... .+
T Consensus 76 ~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR---Li 152 (675)
T KOG0212|consen 76 IKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR---LI 152 (675)
T ss_pred cccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH---HH
Confidence 1 11111112222333445555444 45555555666555543 456667778888999999977733222 23
Q ss_pred HHHhcCCCCCccc----------cccCCChhHHHHHHHHHHhcCCC-CchhhhH---HHHHHHHHhhccccCCCCcchHH
Q 045023 171 RDVVNSPYAPEYD----------IAGITDPFLHIRLLKLLHVLGQG-DADASDC---MNDILAQVATKTESNKNAGNAIL 236 (812)
Q Consensus 171 ~~L~~~~~~pe~~----------~~~~~dpwlqv~lL~lL~~l~~~-~~~~~~~---l~diL~~v~~~~~~~kn~~~aVl 236 (812)
++++...- +.|. ..-+.+|+--+.++.-+..+... +-+.-.. +.|.|-+.++ ..+.+|.
T Consensus 153 kdIVte~~-~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls------D~s~eVr 225 (675)
T KOG0212|consen 153 KDIVTESA-STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS------DSSDEVR 225 (675)
T ss_pred HHhccccc-cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc------CCcHHHH
Confidence 34443221 1221 12234777777777777765432 2222222 2222222222 1233443
Q ss_pred HHHHHHH----HhcCCChhH--HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHh----hhcccccccCH
Q 045023 237 YECVETI----MSIEDNGGL--RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRA----TILECVKDLDA 306 (812)
Q Consensus 237 ~e~v~~i----~~i~~~~~L--~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~----~i~~cL~d~D~ 306 (812)
--|=.++ -.|.++|.- ....+++++.-+.++++.++-.||.-+...+...+..+-.+.. .|+.|+.|++.
T Consensus 226 ~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~ 305 (675)
T KOG0212|consen 226 TLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE 305 (675)
T ss_pred HHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc
Confidence 2222221 224344332 2345788888899999999999999999999988876665554 47789999888
Q ss_pred -hHHHHHH---HHHHHhcCCCCH------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch----hHHHHHHHHH
Q 045023 307 -SIRKRAL---ELVYLLVNESNV------KPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK----IWYIDQMLKV 372 (812)
Q Consensus 307 -sIr~~aL---ell~~l~n~~Nv------~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~----~w~vd~ll~l 372 (812)
+||--|- .++.+++.+.-- ..|++-|..|+.....+-|..+..-|..+-.+++... .-.+.++++-
T Consensus 306 ~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 306 MSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 4666543 356667665544 4899999999999999999999999999988877433 3456666666
Q ss_pred HhhcCccchHHHHHHHHHHH
Q 045023 373 LSEAGNFVKDEVWHALIVVI 392 (812)
Q Consensus 373 L~~~g~~v~~e~i~~i~~li 392 (812)
|....+.|..-..+.+..+.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 66654444444443333333
No 31
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.40 E-value=0.46 Score=55.88 Aligned_cols=412 Identities=12% Similarity=0.148 Sum_probs=235.5
Q ss_pred CcchHHHHHHHHhc-cCChHHHHH-HHHHH-HHHHHHHHccCChHHHHHHHHHHHH--HHHcCCCCCChhHHHHH-----
Q 045023 6 SGTRLRDMIRSIRA-CKTAAEERA-VVRKE-CAAIRAAINENDQDYRHRNLAKLMF--IHMLGYPTHFGQMECLK----- 75 (812)
Q Consensus 6 ~~~~L~~fI~~vr~-~~t~~eEr~-~i~~E-~a~Ir~~l~~~~~~~r~~~l~KLiy--l~~lG~~~~~~~~evik----- 75 (812)
+|..|..|.+++.- |.-..+|.+ ...+| +-.+++.|.++|.+.|+- +.|++- +-.-|.+-.|...|++-
T Consensus 607 rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkki-vLKVv~qcc~t~Gv~~~y~r~dilp~ff~~ 685 (1172)
T KOG0213|consen 607 RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKI-VLKVVKQCCATDGVEPAYIRFDILPEFFFS 685 (1172)
T ss_pred cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHH-HHHHHHHHhcccCCCHHHHhhhhhHHHHhh
Confidence 56678888888765 444444544 44555 456778899987665554 444443 34556665565555543
Q ss_pred ----hhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccC
Q 045023 76 ----SIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQF 151 (812)
Q Consensus 76 ----li~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~ 151 (812)
=++.++-..|.+.|+...+...--. -=.++-+-.|+.|.++..|-++..++++
T Consensus 686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~---~~~v~R~v~~lkde~e~yrkm~~etv~r-------------------- 742 (1172)
T KOG0213|consen 686 FWGRRMALDRRNYKQLVDTTVEIAAKVGS---DPIVSRVVLDLKDEPEQYRKMVAETVSR-------------------- 742 (1172)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHhCc---hHHHHHHhhhhccccHHHHHHHHHHHHH--------------------
Confidence 2344555556666655544321100 0122333334444443333222222111
Q ss_pred CCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCC--chhhh-HHHHHHHHHhhccccC
Q 045023 152 RDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGD--ADASD-CMNDILAQVATKTESN 228 (812)
Q Consensus 152 ~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~--~~~~~-~l~diL~~v~~~~~~~ 228 (812)
++..++..+ .+..+ .+..+|..+...+
T Consensus 743 -----------------------------------------------i~~~lg~~diderleE~lidgil~Afqeqt--- 772 (1172)
T KOG0213|consen 743 -----------------------------------------------IVGRLGAADIDERLEERLIDGILYAFQEQT--- 772 (1172)
T ss_pred -----------------------------------------------HHhccccccccHHHHHHHHHHHHHHHHhcc---
Confidence 122222221 11222 2334444444322
Q ss_pred CCCcchHHHHHHHHHHh-c--CCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh----CHHHHHHhHhhh-ccc
Q 045023 229 KNAGNAILYECVETIMS-I--EDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV----DAQAVQRHRATI-LEC 300 (812)
Q Consensus 229 kn~~~aVl~e~v~~i~~-i--~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~----~p~~v~~h~~~i-~~c 300 (812)
...+|.+-+.-++.. + -..+.+...| ..+...|.++.+++|.-|++.+..++.. ..+..-.|...| .+.
T Consensus 773 --t~d~vml~gfg~V~~~lg~r~kpylpqi~-stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEy 849 (1172)
T KOG0213|consen 773 --TEDSVMLLGFGTVVNALGGRVKPYLPQIC-STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEY 849 (1172)
T ss_pred --cchhhhhhhHHHHHHHHhhccccchHHHH-HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHh
Confidence 233465555555443 2 2245555544 4445678999999999999998888643 223355566554 457
Q ss_pred ccccCHhHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhh---hCCchhHH--HHH
Q 045023 301 VKDLDASIRKRALELVYLLVNES-------NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEK---FSPDKIWY--IDQ 368 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n~~-------Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k---~~~~~~w~--vd~ 368 (812)
|.+.++.+--..|.-+.+|+|-- =++.|+..|.--|+.-...+....|.-++.+|.+ |.+..+|. .--
T Consensus 850 lgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfe 929 (1172)
T KOG0213|consen 850 LGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFE 929 (1172)
T ss_pred cCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence 88888888777777788877765 4778888888888877777888888888888875 77888883 222
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchH-HHHHHHHHhhhhcccccccCccccccCCCC
Q 045023 369 MLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQE-SLVRVAIWCIGEYGDMLVNNVGVLNIEDPI 447 (812)
Q Consensus 369 ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~-~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~ 447 (812)
|+++|+.-...+....++.|--| .+.-.-| .++..|++.|+-..-+. .-..+++-++|||+....
T Consensus 930 LlelLkahkK~iRRaa~nTfG~I-akaIGPq-dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt------------ 995 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYI-AKAIGPQ-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT------------ 995 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHhcCHH-HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh------------
Confidence 45556555444555555444322 2211112 23444555554211111 123467888999986531
Q ss_pred ccChhhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHccCCCC----hHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 045023 448 TVTESDAVDVVEIAIKHHSSD-ITTKAMAMVALLKLSSRFPSC----SERIRDIIVQNKGSLVLELQQRSIEFNS 517 (812)
Q Consensus 448 ~v~~~~vi~~l~~~l~~~~~~-~~vk~~iLtAl~KL~~r~p~~----~~~i~~ll~~~~~s~~~evqqRA~ey~~ 517 (812)
+|-.+++.+..+ ..||.-+|-|+.-+|-+..+. .-.+.-+|+.+..+.|+-=||-|.-..+
T Consensus 996 ---------VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 996 ---------VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred ---------hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH
Confidence 223345544333 479999999999999887543 2346678888888988888887665443
No 32
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.012 Score=68.64 Aligned_cols=172 Identities=12% Similarity=0.160 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc-ccCHhHHHHHH
Q 045023 235 ILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK-DLDASIRKRAL 313 (812)
Q Consensus 235 Vl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~-d~D~sIr~~aL 313 (812)
|+.|-++-... ..++.+.+.+.++-.||.+.++.++|-+--+|..+ ..+|+++++-...+++|+- .+|-.+|.--|
T Consensus 225 ViVE~Irkv~~--~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~kesdnnvklIvl 301 (948)
T KOG1058|consen 225 VIVELIRKVCL--ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKESDNNVKLIVL 301 (948)
T ss_pred HHHHHHHHHHh--cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhccCcchhhhhH
Confidence 44454444443 46677778899999999999999999998887755 4679999998888888865 67888999999
Q ss_pred HHHHHhcCCCC---HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc-Cc------cchHH
Q 045023 314 ELVYLLVNESN---VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA-GN------FVKDE 383 (812)
Q Consensus 314 ell~~l~n~~N---v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~-g~------~v~~e 383 (812)
+.|..+- ..| .+.++-.++..|...|-+++++.+.-...++. +.+.+..++.+-+=+... +. ..++.
T Consensus 302 drl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs--srNvediv~~Lkke~~kT~~~e~d~~~~yRql 378 (948)
T KOG1058|consen 302 DRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS--SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQL 378 (948)
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh--hccHHHHHHHHHHHHHhccccccccchHHHHH
Confidence 9998876 333 33444444455556788999988887777764 344444555544333221 11 12333
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhh
Q 045023 384 VWHALIVVISNASDLHGYTVRALYRAVQT 412 (812)
Q Consensus 384 ~i~~i~~li~~~p~l~~~~v~~L~~~l~~ 412 (812)
.+..+..--.++|+.-..+|.-|.+.+-+
T Consensus 379 Liktih~cav~Fp~~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 379 LIKTIHACAVKFPEVAATVVSLLLDFISD 407 (948)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHhcc
Confidence 44444444456777777777777777764
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.61 Score=57.61 Aligned_cols=366 Identities=14% Similarity=0.183 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhccCCCcceeccCCCchhHHHHHHH---HhcCCCCCccc---------cccCCChhHHHHHHHHHHhcC-
Q 045023 138 ARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRD---VVNSPYAPEYD---------IAGITDPFLHIRLLKLLHVLG- 204 (812)
Q Consensus 138 ~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~---L~~~~~~pe~~---------~~~~~dpwlqv~lL~lL~~l~- 204 (812)
=+++.+.+.+++++.++-.|-.| +.+|.. ++.....|.++ +....+| .-+.-+|.+..+.
T Consensus 116 WPell~~L~q~~~S~~~~~rE~a------l~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESA------LLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAE 188 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHH------HHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHH
Confidence 34667777777777888777766 111111 11111111110 0111233 3333444444332
Q ss_pred --CCCchhhhHHHHHHHHHhhccccCCCCcch-HHHHHHHHHHhc-CCChhH-HHHHHHHHHHh---hcC--CCcchHHH
Q 045023 205 --QGDADASDCMNDILAQVATKTESNKNAGNA-ILYECVETIMSI-EDNGGL-RVLAINILGRF---LSN--RDNNIRYV 274 (812)
Q Consensus 205 --~~~~~~~~~l~diL~~v~~~~~~~kn~~~a-Vl~e~v~~i~~i-~~~~~L-~~l~i~~L~~f---L~~--~d~niryv 274 (812)
..++...+++.++|..+..-+...-..+.. ..-++...+..+ ...+.+ +....+++.-- ..+ -++.+|..
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ 268 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHL 268 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 234555556666665443221111112222 334444444443 223333 22233333222 223 46789999
Q ss_pred HHHHHHHHHhhCHHHHHHhHh-------hhcccc---------------c----ccCHhHHHHHHHHHHHhcC-CCCHHH
Q 045023 275 ALNMLMKAITVDAQAVQRHRA-------TILECV---------------K----DLDASIRKRALELVYLLVN-ESNVKP 327 (812)
Q Consensus 275 aL~~L~~l~~~~p~~v~~h~~-------~i~~cL---------------~----d~D~sIr~~aLell~~l~n-~~Nv~~ 327 (812)
||+.|..++..-|...+.+.. .++.+. . +++..+..++|+.+..=.. +.=+-.
T Consensus 269 ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~ 348 (1075)
T KOG2171|consen 269 ALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPP 348 (1075)
T ss_pred HHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHH
Confidence 999999888776655554432 122221 1 1234677788887764444 444555
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC----CchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh-CCCcHHHH
Q 045023 328 LTKELIDYLEISDQEFKGDLTAKICSMVEKFS----PDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN-ASDLHGYT 402 (812)
Q Consensus 328 Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~----~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~-~p~l~~~~ 402 (812)
+++-+-.++.+.+-.+|.....+|+.+++=-. ....-.++.++..|......|...+.+.+-++-.. .|+++.+.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 66666778888999999999999999987433 34445666666666666667777788777776554 35555544
Q ss_pred HHHHHHHHh---hccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHH-HHHHHHhccCCCHHHHHHHHHH
Q 045023 403 VRALYRAVQ---TSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVD-VVEIAIKHHSSDITTKAMAMVA 478 (812)
Q Consensus 403 v~~L~~~l~---~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~-~l~~~l~~~~~~~~vk~~iLtA 478 (812)
-.++...|. ++.........++-.+=++.+...+.. +.+ . -..++. .|..+++ ..++.+|.+++||
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-l~p-Y------Ld~lm~~~l~~L~~--~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-LEP-Y------LDGLMEKKLLLLLQ--SSKPYVQEQAVTA 498 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-HHH-H------HHHHHHHHHHHHhc--CCchhHHHHHHHH
Confidence 444432222 222333333333333333333222110 000 0 001222 2221222 2468999999999
Q ss_pred HHHHHccCC--------CChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 479 LLKLSSRFP--------SCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 479 l~KL~~r~p--------~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
++-.+.-.. ...+-+..+|+.......-++|-...|...++.
T Consensus 499 IasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 499 IASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 998886432 123444455555555566778878888888874
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.041 Score=63.62 Aligned_cols=182 Identities=19% Similarity=0.211 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHhccCCCcceeccC-------------CCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHh
Q 045023 136 EMARDLAPEVERLLQFRDPNIRKKP-------------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHV 202 (812)
Q Consensus 136 e~~~~l~~~V~~ll~~~~pyVRKkA-------------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~ 202 (812)
+....+-.++.+.+.+.+|.||-.. ..-|.++..|.+++.+ |+|.. +---+..|++
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s---~d~n~--------~EgA~~AL~K 154 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDS---PDYNT--------CEGAFGALQK 154 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcC---Ccccc--------cchhHHHHHH
Confidence 5555556666666667777666555 1346777777777754 33321 1113344555
Q ss_pred cCCCCchhh------hHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC--CChhHHH---HHHHHHHHhhcCCCcch
Q 045023 203 LGQGDADAS------DCMNDILAQVATKTESNKNAGNAILYECVETIMSIE--DNGGLRV---LAINILGRFLSNRDNNI 271 (812)
Q Consensus 203 l~~~~~~~~------~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~--~~~~L~~---l~i~~L~~fL~~~d~ni 271 (812)
++.+.++.- +-++-++.+++.- -+|.++.+.-+|+.++-.+- ....+.. .....|-.+-...++++
T Consensus 155 IcEDsa~~lds~~~~rpl~~mipkfl~f---~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eV 231 (885)
T KOG2023|consen 155 ICEDSAQFLDSDVLTRPLNIMIPKFLQF---FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEV 231 (885)
T ss_pred HHhhhHHHHhhhcccCchHHhHHHHHHH---HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHH
Confidence 554433321 1233333333321 23455556555555544321 1222221 11222222235578999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhHhhhccc----ccccCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 045023 272 RYVALNMLMKAITVDAQAVQRHRATILEC----VKDLDASIRKRALELVYLLVNESNVKPLTKE 331 (812)
Q Consensus 272 ryvaL~~L~~l~~~~p~~v~~h~~~i~~c----L~d~D~sIr~~aLell~~l~n~~Nv~~Iv~e 331 (812)
|--+.+.|..+...+|+-+.+|...|++. -.|.|..+...|-|...+++...=.++++..
T Consensus 232 Rk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p 295 (885)
T KOG2023|consen 232 RKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQP 295 (885)
T ss_pred HHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHH
Confidence 99999999999999999999998777654 4599999999999999999998866665543
No 35
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.003 Score=72.88 Aligned_cols=208 Identities=21% Similarity=0.283 Sum_probs=124.0
Q ss_pred HHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHH----HHHHHhcc-CCCcceeccC-------
Q 045023 93 MLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLA----PEVERLLQ-FRDPNIRKKP------- 160 (812)
Q Consensus 93 ~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~----~~V~~ll~-~~~pyVRKkA------- 160 (812)
...+|+.+|++.-++|.+-+-|.|....+|=|||..|+.+++.+.+.+.. ..|...|+ .++..|||+|
T Consensus 317 ~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 317 AIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999998887665543 33445555 6889999999
Q ss_pred -------CCchhHHHHHHH--------------HhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 045023 161 -------KCLDGLVKTLRD--------------VVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILA 219 (812)
Q Consensus 161 -------~~v~~lv~~L~~--------------L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~ 219 (812)
.+|..+++-|.. ++...|.+|| .|-...+|++++.-+.. .+|.+.--+-
T Consensus 397 cD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy-------~WyVdviLqLiriagd~---vsdeVW~Rvv 466 (938)
T KOG1077|consen 397 CDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY-------SWYVDVILQLIRIAGDY---VSDEVWYRVV 466 (938)
T ss_pred hchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-------chhHHHHHHHHHHhccc---ccHHHHHHhh
Confidence 123333332221 2334566666 68888899999886632 2222222222
Q ss_pred HHhhccccCCCCcchHHHHHHHHHHh-cCC---ChhHHHHH----------------------HHHHHHhhcCCCcchHH
Q 045023 220 QVATKTESNKNAGNAILYECVETIMS-IED---NGGLRVLA----------------------INILGRFLSNRDNNIRY 273 (812)
Q Consensus 220 ~v~~~~~~~kn~~~aVl~e~v~~i~~-i~~---~~~L~~l~----------------------i~~L~~fL~~~d~niry 273 (812)
|+..|.| .|---|+++++. +.. ++.+.+.+ ...|.+-+-...+-.|-
T Consensus 467 QiVvNne-------dlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~ 539 (938)
T KOG1077|consen 467 QIVVNNE-------DLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRA 539 (938)
T ss_pred eeEecch-------hhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHH
Confidence 2222211 111111111111 100 01111111 12232223345677899
Q ss_pred HHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHH
Q 045023 274 VALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVY 317 (812)
Q Consensus 274 vaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~ 317 (812)
+.|.++.++....|++=.+-+..|-.-.+--|+.+..||.|-+-
T Consensus 540 lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 540 LLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred HHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 99999999998888652222222212222368999999998664
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.23 E-value=0.027 Score=65.91 Aligned_cols=227 Identities=11% Similarity=0.147 Sum_probs=150.6
Q ss_pred HHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch
Q 045023 290 VQRHRATILECVKDLDASIRKRALELVYLLVNESNV-------KPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK 362 (812)
Q Consensus 290 v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv-------~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~ 362 (812)
...|...+..+|.++++.||+.++..+..++..+.. ..++.-++..+...|.+....++..+..++. +.+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 567788888999999999999999999888766643 4466677778888899999999999999995 44444
Q ss_pred hHH-----HHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhhccchHH-HHHHHHHhhhhcc
Q 045023 363 IWY-----IDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTV-----RALYRAVQTSIEQES-LVRVAIWCIGEYG 431 (812)
Q Consensus 363 ~w~-----vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v-----~~L~~~l~~~~~~~~-l~~~~~WiiGEY~ 431 (812)
+.. +..|.+++....+.+.--+...++.+....++...++. .++...+.+ .+. ++..++=++++-+
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La 230 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS---DDILVQLNALELLSELA 230 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHH
Confidence 444 66677767664555666666666777667777665544 333333432 233 3445666777777
Q ss_pred cccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC----CC-C---hHHHHHHHHHhhCC
Q 045023 432 DMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF----PS-C---SERIRDIIVQNKGS 503 (812)
Q Consensus 432 ~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~----p~-~---~~~i~~ll~~~~~s 503 (812)
.. ..+-.+.. ...+++.+..++....+++......+-..+|++... |. . .+.+...+.....+
T Consensus 231 ~~-~~g~~yL~--------~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 231 ET-PHGLQYLE--------QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES 301 (503)
T ss_pred cC-hhHHHHHH--------hCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC
Confidence 62 22222211 235777777777665555545666666777776543 22 1 23344444566678
Q ss_pred CChHHHHHHHHHHHHhccCHHHHHHh
Q 045023 504 LVLELQQRSIEFNSIVEKHQNIRSTL 529 (812)
Q Consensus 504 ~~~evqqRA~ey~~Ll~~~~~~~~~l 529 (812)
.|...+.-|.+-+..+....+=+..+
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999886555444444
No 37
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=1.3 Score=56.17 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=72.9
Q ss_pred ChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHH--HHHHHHHhhcCCCCHhHHHHHHHHHhc--cCchhhHHHHHH
Q 045023 68 FGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLM--LVTNSLKQDLNHTNQYIVGLALCALGN--ICSAEMARDLAP 143 (812)
Q Consensus 68 ~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~--L~~Nsl~kDL~s~n~~i~~lAL~~Ls~--I~~~e~~~~l~~ 143 (812)
+..-.++..+..+....|-=+-=.++.+..-+|.++. .+=-.+..=++++.--||-.||-.+|. ++.+|.++..+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~ 895 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD 895 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 3344444455666666665555555666666665521 122334455677888999999999996 478999999999
Q ss_pred HHHHhccCCCcceeccCCCchhHHHHHHHHhcC
Q 045023 144 EVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNS 176 (812)
Q Consensus 144 ~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~ 176 (812)
-|...+.|..-.|||+| +++++++...
T Consensus 896 ~i~erIlDtgvsVRKRv------IKIlrdic~e 922 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRV------IKILRDICEE 922 (1692)
T ss_pred HHHhhcCCCchhHHHHH------HHHHHHHHHh
Confidence 99999999999999998 7888887654
No 38
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.10 E-value=0.065 Score=64.48 Aligned_cols=269 Identities=15% Similarity=0.223 Sum_probs=146.1
Q ss_pred hhcCCCCHhHHHHHHHHHhccCc-----hhhHH-HHHHHHHHhccCCCcceeccCCCchhHHHHHHH----------Hhc
Q 045023 112 QDLNHTNQYIVGLALCALGNICS-----AEMAR-DLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRD----------VVN 175 (812)
Q Consensus 112 kDL~s~n~~i~~lAL~~Ls~I~~-----~e~~~-~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~----------L~~ 175 (812)
+=|.+.|..+..+++++|.+++. .+|++ .+++.+.+++.+.+.-+++.| ++.|.+ ++.
T Consensus 297 ~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~a------LrlL~NLSfd~~~R~~mV~ 370 (708)
T PF05804_consen 297 KCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVA------LRLLFNLSFDPELRSQMVS 370 (708)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHH------HHHHHHhCcCHHHHHHHHH
Confidence 33456677777777777777753 23333 356677777777665555544 111111 111
Q ss_pred CCCCCcc-ccccCCChhHHHHHHHHHHhcCCCCchh-----hhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC
Q 045023 176 SPYAPEY-DIAGITDPFLHIRLLKLLHVLGQGDADA-----SDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDN 249 (812)
Q Consensus 176 ~~~~pe~-~~~~~~dpwlqv~lL~lL~~l~~~~~~~-----~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~ 249 (812)
.|+.|.. .... .+.+ +...+++|..++..+..- .+.+.-++..+.++ .+..|-.|.+-....+..+
T Consensus 371 ~GlIPkLv~LL~-d~~~-~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~------~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 371 LGLIPKLVELLK-DPNF-REVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN------SEEEVQLELIALLINLALN 442 (708)
T ss_pred CCCcHHHHHHhC-CCch-HHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC------CCccccHHHHHHHHHHhcC
Confidence 2222211 0011 1122 334778888777754321 12232333333332 3444555666666666554
Q ss_pred hhHHHHH-----HHHH-HHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhHhhhcccccc-cCHhHHHHHHHHHHHh
Q 045023 250 GGLRVLA-----INIL-GRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHRATILECVKD-LDASIRKRALELVYLL 319 (812)
Q Consensus 250 ~~L~~l~-----i~~L-~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~~~i~~cL~d-~D~sIr~~aLell~~l 319 (812)
+.--+.. ...| .+-+..+| -+.+..+..+.+.++ ..+..|...+..++.. ++....-.+|-+|..|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 3321111 1111 12233444 344555555655552 3566777777776664 4567777888888877
Q ss_pred cCC-CCHHHHHHH--HHHHhhh------cCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcCc--cchHH
Q 045023 320 VNE-SNVKPLTKE--LIDYLEI------SDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAGN--FVKDE 383 (812)
Q Consensus 320 ~n~-~Nv~~Iv~e--Ll~yl~~------~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g~--~v~~e 383 (812)
... -++..++++ |+.|+.. +++++.-++|.-+|.+|. .+..+.+ .+++++.+|....+ .+.-.
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 644 388999875 6777753 467888899988888773 2222333 58889999987653 34444
Q ss_pred HHHHHHHHHHhCCCcHH
Q 045023 384 VWHALIVVISNASDLHG 400 (812)
Q Consensus 384 ~i~~i~~li~~~p~l~~ 400 (812)
++..|.+++.. ++.+.
T Consensus 598 il~~f~~ll~h-~~tr~ 613 (708)
T PF05804_consen 598 ILYVFYQLLFH-EETRE 613 (708)
T ss_pred HHHHHHHHHcC-hHHHH
Confidence 55556666644 44443
No 39
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.32 Score=57.62 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=89.1
Q ss_pred hHHHHHHH-HhccCChHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHH-hhccCCCCchh
Q 045023 9 RLRDMIRS-IRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLK-SIASAGFPEKR 86 (812)
Q Consensus 9 ~L~~fI~~-vr~~~t~~eEr~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evik-li~s~~~~~KR 86 (812)
.||.++-. |.+-...+||--++..++ ++......+.+|..++.+|+|+.=. .++|+.=..+| .+.+++....-
T Consensus 79 ~LRr~vYl~Ikels~isedviivtssl---mkD~t~~~d~yr~~AiR~L~~I~d~--~m~~~iery~kqaivd~~~avSs 153 (865)
T KOG1078|consen 79 SLRRMVYLAIKELSKISEDVIIVTSSL---MKDMTGKEDLYRAAAIRALCSIIDG--TMLQAIERYMKQAIVDKNPAVSS 153 (865)
T ss_pred HHHHHHHHHHhhccccchhhhhhhHHH---HhhccCCCcchhHHHHHHHHhhcCc--chhHHHHHHHHhHeeccccccch
Confidence 35555533 566677788888887776 5554444778899999999987543 45666666666 46777777777
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCc
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICS 134 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~ 134 (812)
..-+-...|+..+.+...=-.|-++--.++.|.+++.-||-.|..|+.
T Consensus 154 aalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk 201 (865)
T KOG1078|consen 154 AALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRK 201 (865)
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHh
Confidence 777777778888888888888888888888888888888888888743
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.87 E-value=0.017 Score=57.92 Aligned_cols=90 Identities=24% Similarity=0.191 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhH-hhhcccccccCHhHHHHHHHHHHHhcCC---CCH
Q 045023 250 GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHR-ATILECVKDLDASIRKRALELVYLLVNE---SNV 325 (812)
Q Consensus 250 ~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~-~~i~~cL~d~D~sIr~~aLell~~l~n~---~Nv 325 (812)
+.+....+..+...|.+.++.+|..|+..|.+++..+.--++.+. ..++.|+.|+|..||..|...+..+... +.+
T Consensus 20 ~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 20 PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH
Confidence 445555677778889999999999999999999998876677666 7788999999999999999999888766 448
Q ss_pred HHHHHHHHHHhhhc
Q 045023 326 KPLTKELIDYLEIS 339 (812)
Q Consensus 326 ~~Iv~eLl~yl~~~ 339 (812)
...+.|++.++...
T Consensus 100 ~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 100 YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHhCc
Confidence 88888888888753
No 41
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.35 Score=55.36 Aligned_cols=218 Identities=18% Similarity=0.221 Sum_probs=136.6
Q ss_pred cCCCCHhHHHHHHHHHhcc---CchhhHHH---HHHHHHHhccCCCcceeccC-CCchhHHHHHHHHhcCCCCCccc---
Q 045023 114 LNHTNQYIVGLALCALGNI---CSAEMARD---LAPEVERLLQFRDPNIRKKP-KCLDGLVKTLRDVVNSPYAPEYD--- 183 (812)
Q Consensus 114 L~s~n~~i~~lAL~~Ls~I---~~~e~~~~---l~~~V~~ll~~~~pyVRKkA-~~v~~lv~~L~~L~~~~~~pe~~--- 183 (812)
+...|++.|-.-+.+|.-+ ..-+|+.. +.+-+.+.|.|+++-||.-+ .+.. +.|+++-.+-.+-+|+
T Consensus 176 iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~---~fL~eI~s~P~s~d~~~~i 252 (675)
T KOG0212|consen 176 IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS---EFLAEIRSSPSSMDYDDMI 252 (675)
T ss_pred HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH---HHHHHHhcCccccCcccch
Confidence 3445788888777776654 45577654 56777788888888888543 1222 3344443321111332
Q ss_pred -----cccCCChhHHHHHHHHHHhcCCCCch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHH----HHHhcCCChhH-
Q 045023 184 -----IAGITDPFLHIRLLKLLHVLGQGDAD-ASDCMNDILAQVATKTESNKNAGNAILYECVE----TIMSIEDNGGL- 252 (812)
Q Consensus 184 -----~~~~~dpwlqv~lL~lL~~l~~~~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~----~i~~i~~~~~L- 252 (812)
-.+.++|+.|.+.|.-+..+.+..+. .--.+.++|..++.-.....+ .-.+|+.. .++.+-+++..
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~---~~i~~~a~~~n~~l~~l~s~~~~~ 329 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEE---MSIKEYAQMVNGLLLKLVSSERLK 329 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcc---ccHHHHHHHHHHHHHHHHhhhhhc
Confidence 14568999999999988877654322 222334455544432211111 11222222 23333221111
Q ss_pred ----HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhc----ccccccCHhHHHHHHHHHHHhcCCCC
Q 045023 253 ----RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIL----ECVKDLDASIRKRALELVYLLVNESN 324 (812)
Q Consensus 253 ----~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~----~cL~d~D~sIr~~aLell~~l~n~~N 324 (812)
....++.|.+.+++..-+.|..+|+-+..+-...|+-+-.|...|| .-|.|.+..+-.++|+++..+|+..|
T Consensus 330 ~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 330 EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 1246889999999999999999999999999999877766665554 45678888999999999999999998
Q ss_pred HHHHHHHHHHHhh
Q 045023 325 VKPLTKELIDYLE 337 (812)
Q Consensus 325 v~~Iv~eLl~yl~ 337 (812)
-....+-++.-++
T Consensus 410 ~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 410 SPNLRKFLLSLLE 422 (675)
T ss_pred cccHHHHHHHHHH
Confidence 7655555555443
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.49 Score=54.49 Aligned_cols=354 Identities=17% Similarity=0.137 Sum_probs=188.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH-HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCCh------hHHHHHhhccCCC
Q 045023 10 LRDMIRSIRACKTAAEERAVVRKE-CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFG------QMECLKSIASAGF 82 (812)
Q Consensus 10 L~~fI~~vr~~~t~~eEr~~i~~E-~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~------~~evikli~s~~~ 82 (812)
.+.+.+..++...-++|+.+-+.| ..+||+.-++..-.+|+. .--..+.......+ .-..+..+-|++.
T Consensus 5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 80 (514)
T KOG0166|consen 5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRN----DEEELMLDELLSDSQSQASNLELMLAALYSDDP 80 (514)
T ss_pred hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhh----hhhhcccccccchhHHHhhhhHHHHHHHhCCCH
Confidence 355566665544556666554444 679999888865544444 11111111112111 2223334445555
Q ss_pred CchhHHHHHHHHhcc--cchhHHHHH----HHHHHhhcC-CCCHhHHHHHHHHHhccCc---hhh---HHH-HHHHHHHh
Q 045023 83 PEKRIGYLGLMLLLD--ERQEVLMLV----TNSLKQDLN-HTNQYIVGLALCALGNICS---AEM---ARD-LAPEVERL 148 (812)
Q Consensus 83 ~~KRlgYL~~~~ll~--~~~el~~L~----~Nsl~kDL~-s~n~~i~~lAL~~Ls~I~~---~e~---~~~-l~~~V~~l 148 (812)
....-+--.+..++. .+|.+--.+ +..+-.-|. +.++.++-.|=-+|.||++ ... +++ ..|...++
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 553333333333332 223331111 122233343 3345555444444444433 221 111 35666888
Q ss_pred ccCCCcceeccCC-----C------------chhHHHHHHHHhcCCCCCccccccCCChh-HHHHHHHHHHhcCCCC-ch
Q 045023 149 LQFRDPNIRKKPK-----C------------LDGLVKTLRDVVNSPYAPEYDIAGITDPF-LHIRLLKLLHVLGQGD-AD 209 (812)
Q Consensus 149 l~~~~pyVRKkA~-----~------------v~~lv~~L~~L~~~~~~pe~~~~~~~dpw-lqv~lL~lL~~l~~~~-~~ 209 (812)
+.+++..||-.|- + -..++..|-.++. ..++. ..-.+.-+|..+|++. |.
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~-----------~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN-----------KSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc-----------cccchHHHHHHHHHHHHHHcCCCCC
Confidence 8899988887771 0 0111111111111 11221 1222344456666653 22
Q ss_pred ----hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC-ChhHHH-----HHHHHHHHhhcCCCcchHHHHHHHH
Q 045023 210 ----ASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIED-NGGLRV-----LAINILGRFLSNRDNNIRYVALNML 279 (812)
Q Consensus 210 ----~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~-~~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L 279 (812)
....+..+|..++.. ...-|+-.+.-++-++.. ..+... -.+..|..+|.+.+++++--||+++
T Consensus 230 P~~~~v~~iLp~L~~ll~~------~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHS------TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CcHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 122333444444433 345677777777766643 222111 2356778889999999999999999
Q ss_pred HHHHhhCH---HHHHH--hHhhhccccc-ccCHhHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHhhhcCHHHHH
Q 045023 280 MKAITVDA---QAVQR--HRATILECVK-DLDASIRKRALELVYLLVNESNVK--------PLTKELIDYLEISDQEFKG 345 (812)
Q Consensus 280 ~~l~~~~p---~~v~~--h~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~--------~Iv~eLl~yl~~~d~~~~~ 345 (812)
..|+.-+- +.+-. -...+..++. .+..+||+.|.=++..|+- .|.+ .+++.|+.-+..+|-+.|+
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 99876543 22222 2233455666 4455699999999998775 5543 3568888888889999999
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcH
Q 045023 346 DLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLH 399 (812)
Q Consensus 346 ~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~ 399 (812)
|++-+|+.++..=. .+ .+..|+ ..| ++.-+++++ ..++.+
T Consensus 383 EAawaIsN~ts~g~--~~-qi~yLv----~~g------iI~plcdlL-~~~D~~ 422 (514)
T KOG0166|consen 383 EAAWAISNLTSSGT--PE-QIKYLV----EQG------IIKPLCDLL-TCPDVK 422 (514)
T ss_pred HHHHHHHhhcccCC--HH-HHHHHH----HcC------Cchhhhhcc-cCCChH
Confidence 99999999886533 22 222332 222 566777776 455543
No 43
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.71 E-value=0.48 Score=57.20 Aligned_cols=314 Identities=13% Similarity=0.150 Sum_probs=177.3
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhh----HHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHH-----HHH
Q 045023 189 DPFLHIRLLKLLHVLGQGDADASD----CMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLA-----INI 259 (812)
Q Consensus 189 dpwlqv~lL~lL~~l~~~~~~~~~----~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~-----i~~ 259 (812)
++=+++-.+.+|+.++-......+ .+..-|.++... .+.-++-.+++.+++++.++.+|... +..
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s------~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPk 376 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS------ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPK 376 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC------CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHH
Confidence 344677778888887754322111 112233334331 23457788999999999998877654 457
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhCH--HHHH--HhHhhhccccc-ccCHhHHHHHHHHHHHh-cCCCCHHHHHHH--
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAITVDA--QAVQ--RHRATILECVK-DLDASIRKRALELVYLL-VNESNVKPLTKE-- 331 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~~~~p--~~v~--~h~~~i~~cL~-d~D~sIr~~aLell~~l-~n~~Nv~~Iv~e-- 331 (812)
|..+|. +++.+.+++..|..+...+. ..|. .....++.++- .++..+....+-++..+ +++.|++.+++.
T Consensus 377 Lv~LL~--d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~g 454 (708)
T PF05804_consen 377 LVELLK--DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNG 454 (708)
T ss_pred HHHHhC--CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCc
Confidence 777774 57899999999999876432 2222 22333444333 34555666666666655 467788777652
Q ss_pred HHHHhhhcCHHHHHHHHHH-HHHHHhhhC-CchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC--CCcH-HHH----
Q 045023 332 LIDYLEISDQEFKGDLTAK-ICSMVEKFS-PDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA--SDLH-GYT---- 402 (812)
Q Consensus 332 Ll~yl~~~d~~~~~~li~~-I~~la~k~~-~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~--p~l~-~~~---- 402 (812)
|...++.+ ..++..++-+ |..++ .+. +...-+++.+.+++.....-=.+|....++.++.+- |++. ..+
T Consensus 455 L~~L~~ra-~~~~D~lLlKlIRNiS-~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~ 532 (708)
T PF05804_consen 455 LQSLMKRA-LKTRDPLLLKLIRNIS-QHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEY 532 (708)
T ss_pred HHHHHHHH-HhcccHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhC
Confidence 22222221 1233333333 33333 333 444444555554444332222567777777777763 4431 122
Q ss_pred --HHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 045023 403 --VRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALL 480 (812)
Q Consensus 403 --v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~ 480 (812)
+.-|.+.|......+.+..-++-++|--+.--. ... .+..+.+++.|..+++...++.+.-.+++-++-
T Consensus 533 ~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~-~A~--------lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 533 NLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE-CAP--------LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH-HHH--------HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 233333343222233333334444665432100 000 112345777787888888889999999999999
Q ss_pred HHHccCCCChHHHH------HHHHHhhCCCChHHHHHHHHHHHHhccC
Q 045023 481 KLSSRFPSCSERIR------DIIVQNKGSLVLELQQRSIEFNSIVEKH 522 (812)
Q Consensus 481 KL~~r~p~~~~~i~------~ll~~~~~s~~~evqqRA~ey~~Ll~~~ 522 (812)
++..+ ++.++.+. ..+-...+|.|.+||+=|-...-++..+
T Consensus 604 ~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 604 QLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99876 34444332 3444466899999999998888888643
No 44
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=1.7 Score=51.64 Aligned_cols=416 Identities=14% Similarity=0.150 Sum_probs=222.4
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCC------ChhHHHHHhhccCCCCchhHHHHHHHHhcccchh---------------
Q 045023 43 ENDQDYRHRNLAKLMFIHMLGYPTH------FGQMECLKSIASAGFPEKRIGYLGLMLLLDERQE--------------- 101 (812)
Q Consensus 43 ~~~~~~r~~~l~KLiyl~~lG~~~~------~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~e--------------- 101 (812)
++|.+.+..++..|.-++++=|+.= -.|.--+.-|-|++-+.+--|-=|++..++|.-|
T Consensus 228 ~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p 307 (859)
T KOG1241|consen 228 SPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP 307 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3467778888888888888888752 2344445667788889999999899877766533
Q ss_pred ------------HHHHHHHHHHh-hc----CCCCHh-HHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC---
Q 045023 102 ------------VLMLVTNSLKQ-DL----NHTNQY-IVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--- 160 (812)
Q Consensus 102 ------------l~~L~~Nsl~k-DL----~s~n~~-i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--- 160 (812)
+.-.+.+.+-| |= -+=||. --|--|-.++..+..+|++.+.|.|+..+.++++.=|-.|
T Consensus 308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 44445555555 21 112332 2344466678889999999999999999999888777666
Q ss_pred --------------CCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccc
Q 045023 161 --------------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTE 226 (812)
Q Consensus 161 --------------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~ 226 (812)
+.+++.+..+-.++. .|---+. .+..|..-+|.+.+..-+-.......++.-++.-+-.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~---D~sl~Vk-dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--- 460 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMS---DPSLWVK-DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--- 460 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhc---Cchhhhc-chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---
Confidence 123333333333332 1211112 4567776677766652221111111111111111111
Q ss_pred cCCCCcchHHHHHHHHHHhc-------CCCh----hHHHHHHHHHHHhh------cCCCcchHHHHHHHHHHHHhhCHHH
Q 045023 227 SNKNAGNAILYECVETIMSI-------EDNG----GLRVLAINILGRFL------SNRDNNIRYVALNMLMKAITVDAQA 289 (812)
Q Consensus 227 ~~kn~~~aVl~e~v~~i~~i-------~~~~----~L~~l~i~~L~~fL------~~~d~niryvaL~~L~~l~~~~p~~ 289 (812)
.+=|.-.|...+..+ ..+. ..-...-.+++.+| ..+++|.|-.|.+.|..++...|+.
T Consensus 461 -----ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 461 -----EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 111222222222211 1111 11112223444444 2367899999999999999887765
Q ss_pred HHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHH-HHHHHHhhhc-CHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 045023 290 VQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLT-KELIDYLEIS-DQEFKGDLTAKICSMVEKFSPDKIWYID 367 (812)
Q Consensus 290 v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv-~eLl~yl~~~-d~~~~~~li~~I~~la~k~~~~~~w~vd 367 (812)
+-.-...+. +-++.+| ...+ .+.+.+-... -.++...++..+..+..|+.++.+-+.|
T Consensus 536 vy~~v~~~~--------------l~il~kl------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 536 VYPMVQKLT--------------LVILEKL------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred HHHHHHHHH--------------HHHHHHH------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 543221111 1111110 0001 2222232211 1457777788888888888777666666
Q ss_pred HH----HHHHhhcC-ccchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhhcccccccCc
Q 045023 368 QM----LKVLSEAG-NFVKDEVWHALIVVISNA-SDLHGYTVRALYRAVQTSI---EQESLVRVAIWCIGEYGDMLVNNV 438 (812)
Q Consensus 368 ~l----l~lL~~~g-~~v~~e~i~~i~~li~~~-p~l~~~~v~~L~~~l~~~~---~~~~l~~~~~WiiGEY~~~l~~~~ 438 (812)
.+ ++++...+ ..+.+|+.-.+-.++..- +.+-.|+ .....+|.... ....+..+++=++|.-+.-+...-
T Consensus 596 ~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i 674 (859)
T KOG1241|consen 596 QIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI 674 (859)
T ss_pred HHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 54 45555533 346677665555555432 2233332 44555554332 222345555555666555442210
Q ss_pred -cccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC----ChHHHHHHHHHhh
Q 045023 439 -GVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS----CSERIRDIIVQNK 501 (812)
Q Consensus 439 -~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~----~~~~i~~ll~~~~ 501 (812)
.+ -.++...|-.-|.++...-.+|-.||..+.-++.-... -.+.|..+|+...
T Consensus 675 ~py----------~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 675 LPY----------CDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred hhH----------HHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00 11233333333444445678999999999999986632 3467777887766
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.49 E-value=1.3 Score=50.57 Aligned_cols=335 Identities=15% Similarity=0.165 Sum_probs=181.3
Q ss_pred HhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcC---CCCCccccccCCChhHHHH
Q 045023 119 QYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNS---PYAPEYDIAGITDPFLHIR 195 (812)
Q Consensus 119 ~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~---~~~pe~~~~~~~dpwlqv~ 195 (812)
+..+-+-+..++.+...+.++.+..-|-.++.+. |..++.+.+.... -|.|-+......|.|.+.+
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-----------~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~ 120 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-----------DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHM 120 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----------hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHH
Confidence 4444455667777888888888888887777662 2222322222110 1111122334467888888
Q ss_pred HHHHHHhcCCCCch-----hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH-----HHHHHHHHhhc
Q 045023 196 LLKLLHVLGQGDAD-----ASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV-----LAINILGRFLS 265 (812)
Q Consensus 196 lL~lL~~l~~~~~~-----~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~-----l~i~~L~~fL~ 265 (812)
..++|..+....+. ..+.+.+.|...+++. ....-.+-|++++..+-..+..|. .++..|...|.
T Consensus 121 a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~-----~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~ 195 (429)
T cd00256 121 SFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI-----TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLS 195 (429)
T ss_pred HHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc-----CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHh
Confidence 88888876433221 1122333333333321 123334444444433322222222 14556666665
Q ss_pred CC--CcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccC-HhHHHHHHHHHHHhcCCC--------CHHHHH
Q 045023 266 NR--DNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLD-ASIRKRALELVYLLVNES--------NVKPLT 329 (812)
Q Consensus 266 ~~--d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D-~sIr~~aLell~~l~n~~--------Nv~~Iv 329 (812)
.. +..+.|-++-++-.+. .+++++.. ....+.+.+++.. .-|-|-++-++..+++.. ....+|
T Consensus 196 ~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv 274 (429)
T cd00256 196 NATLGFQLQYQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV 274 (429)
T ss_pred hccccHHHHHHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Confidence 42 4578898888877554 33332221 1122334444322 356667778888888754 223444
Q ss_pred H-HHHHHhh------hcCHHHHHHHHHHHHHHHhhhC--CchhHH-HHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcH
Q 045023 330 K-ELIDYLE------ISDQEFKGDLTAKICSMVEKFS--PDKIWY-IDQMLKVLSEAGNFVKDEVWHALIVVISNASDLH 399 (812)
Q Consensus 330 ~-eLl~yl~------~~d~~~~~~li~~I~~la~k~~--~~~~w~-vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~ 399 (812)
. .++..+. ..|+|+..++-.--..+.+++- ..++-| -+..-..|.=+.-|-++..|..=..-+.++ .
T Consensus 275 ~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~---~ 351 (429)
T cd00256 275 QCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEK---N 351 (429)
T ss_pred HcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhc---c
Confidence 4 3444443 2688888776665555555432 222323 333333444455677888887655444322 2
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 045023 400 GYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVAL 479 (812)
Q Consensus 400 ~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl 479 (812)
-.++.+|.+.+....++ ..+++++.=||||....+.+..+.+. -..=+.+..++. .++++||-..|.|+
T Consensus 352 ~~llk~L~~iL~~s~d~-~~laVAc~Dige~vr~~P~gr~i~~~--------lg~K~~vM~Lm~--h~d~~Vr~eAL~av 420 (429)
T cd00256 352 YELLKILIHLLETSVDP-IILAVACHDIGEYVRHYPRGKDVVEQ--------LGGKQRVMRLLN--HEDPNVRYEALLAV 420 (429)
T ss_pred hHHHHHHHHHHhcCCCc-ceeehhhhhHHHHHHHCccHHHHHHH--------cCcHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 35678888888644333 46789999999999887654432110 001122333444 24789999999999
Q ss_pred HHHHc
Q 045023 480 LKLSS 484 (812)
Q Consensus 480 ~KL~~ 484 (812)
-|+-.
T Consensus 421 Qklm~ 425 (429)
T cd00256 421 QKLMV 425 (429)
T ss_pred HHHHH
Confidence 99854
No 46
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.42 E-value=0.27 Score=59.19 Aligned_cols=242 Identities=16% Similarity=0.225 Sum_probs=152.6
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCH-----HHHHHhHhhhcccccccCHhHHHHHHHHHHHh---cCCCCHHHHHHHHH
Q 045023 262 RFLSNRDNNIRYVALNMLMKAITVDA-----QAVQRHRATILECVKDLDASIRKRALELVYLL---VNESNVKPLTKELI 333 (812)
Q Consensus 262 ~fL~~~d~niryvaL~~L~~l~~~~p-----~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l---~n~~Nv~~Iv~eLl 333 (812)
.-..++|..+||.|.+-|..=++.+. +...+-...++..|.|....+...|...+--| +-+.-++.+|++|.
T Consensus 12 ekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~ 91 (1233)
T KOG1824|consen 12 EKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLC 91 (1233)
T ss_pred HHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 44578999999999998877766543 33444556678899999988888877766544 55677889999999
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHhhhCC-----chhHHHHHHHHHHhhcC------ccchHHHHHHHHHHHHhC----CCc
Q 045023 334 DYLEISDQEFKGDLTAKICSMVEKFSP-----DKIWYIDQMLKVLSEAG------NFVKDEVWHALIVVISNA----SDL 398 (812)
Q Consensus 334 ~yl~~~d~~~~~~li~~I~~la~k~~~-----~~~w~vd~ll~lL~~~g------~~v~~e~i~~i~~li~~~----p~l 398 (812)
..+-....+.|.-....+-...-..+| -....+..+...|..+- .-+.-|+...+.+++.+. |+.
T Consensus 92 ~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f 171 (1233)
T KOG1824|consen 92 SNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF 171 (1233)
T ss_pred hhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch
Confidence 886554444433322233222333444 22234555555555432 126677888888888775 567
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhc---cCCCHHHHHH-
Q 045023 399 HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKH---HSSDITTKAM- 474 (812)
Q Consensus 399 ~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~---~~~~~~vk~~- 474 (812)
|..+..-+...+. .....+++-++.++|.-+-...+. -+.++++.+++. +.....+|.+
T Consensus 172 h~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~---------------ly~~li~~Ll~~L~~~~q~~~~rt~I 234 (1233)
T KOG1824|consen 172 HLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRD---------------LYVELIEHLLKGLSNRTQMSATRTYI 234 (1233)
T ss_pred HHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHH---------------HHHHHHHHHHhccCCCCchHHHHHHH
Confidence 7766665554444 245677888999999776443221 122223333332 2223455544
Q ss_pred -HHHHHHHHHc-cCCCChHHHHHHHHHhh---CCCChHHHHHHHHHHHHhc
Q 045023 475 -AMVALLKLSS-RFPSCSERIRDIIVQNK---GSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 475 -iLtAl~KL~~-r~p~~~~~i~~ll~~~~---~s~~~evqqRA~ey~~Ll~ 520 (812)
.|.++++=+- |+.+..+++.-++..|. +..+-|+|+-+.+-...|-
T Consensus 235 q~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 235 QCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 3555555443 45666788888888888 7888999999988777763
No 47
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.21 Score=59.12 Aligned_cols=343 Identities=15% Similarity=0.201 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCCCCC--ChhHHHHHhhccCC-CCchhHHHHHHHHhc-ccchhHHHHHHHHHHhhcCCCCHhHHHHHH
Q 045023 51 RNLAKLMFIHMLGYPTH--FGQMECLKSIASAG-FPEKRIGYLGLMLLL-DERQEVLMLVTNSLKQDLNHTNQYIVGLAL 126 (812)
Q Consensus 51 ~~l~KLiyl~~lG~~~~--~~~~evikli~s~~-~~~KRlgYL~~~~ll-~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL 126 (812)
--++|++|+|+.-|--. ++...+++.+-.+- -+.=-+--+|+..+. =.-+.+.--.++-+++-++|.++|+|--|-
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa 142 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAA 142 (734)
T ss_pred chHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHH
Confidence 34789999999888654 44555566543111 011122233333321 123455666778899999999999998888
Q ss_pred HHHhcc--CchhhHHH--HHHHHHHhccCCCcceeccC-----------------CCc----hhHHHHHHHHhc------
Q 045023 127 CALGNI--CSAEMARD--LAPEVERLLQFRDPNIRKKP-----------------KCL----DGLVKTLRDVVN------ 175 (812)
Q Consensus 127 ~~Ls~I--~~~e~~~~--l~~~V~~ll~~~~pyVRKkA-----------------~~v----~~lv~~L~~L~~------ 175 (812)
-+.+++ ..++++++ +.+....++.|.+|-|--.| .+. ..++..|.++..
T Consensus 143 ~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~I 222 (734)
T KOG1061|consen 143 VCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFI 222 (734)
T ss_pred HHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHH
Confidence 777776 45666665 78888889999999988777 011 222333333211
Q ss_pred ----CCCCCc-----cccccCCChhHH-------HHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHH
Q 045023 176 ----SPYAPE-----YDIAGITDPFLH-------IRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYEC 239 (812)
Q Consensus 176 ----~~~~pe-----~~~~~~~dpwlq-------v~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~ 239 (812)
..|.|. +++..-..||+| +..++++..+...-+.. -..++.++...+-+.......+.|=+
T Consensus 223 L~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~---~~~~~~K~~~pl~tlls~~~e~qyva 299 (734)
T KOG1061|consen 223 LDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV---NELLFKKVAPPLVTLLSSESEIQYVA 299 (734)
T ss_pred HHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH---HHHHHHHhcccceeeecccchhhHHH
Confidence 122221 123334445543 22233322221111111 11222233322211112233666666
Q ss_pred HHHHHhc-CCChhHHHHHHHHHHHhh-cCCC-cchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHH
Q 045023 240 VETIMSI-EDNGGLRVLAINILGRFL-SNRD-NNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELV 316 (812)
Q Consensus 240 v~~i~~i-~~~~~L~~l~i~~L~~fL-~~~d-~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell 316 (812)
.+-|.-+ ..-+++. ..-+..|+ .-+| --++-.-|+++..++.. .-+++-+..+...-.+-|+..-|+++..+
T Consensus 300 LrNi~lil~~~p~~~---~~~~~~Ff~kynDPiYvK~eKleil~~la~~--~nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 300 LRNINLILQKRPEIL---KVEIKVFFCKYNDPIYVKLEKLEILIELAND--ANLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred HhhHHHHHHhChHHH---HhHhHeeeeecCCchhhHHHHHHHHHHHhhH--hHHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 6655432 2233321 12233443 2233 23555666666666533 33333333333344467888888888888
Q ss_pred HHhcCC-CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC
Q 045023 317 YLLVNE-SNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA 395 (812)
Q Consensus 317 ~~l~n~-~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~ 395 (812)
..++-. .-+...|..|++.++..-.....+++.-|..+-.+|+..++-.+.++-..+..-+ .+|+-..++.|+.++
T Consensus 375 g~~aik~e~~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~---epeak~amiWilg~y 451 (734)
T KOG1061|consen 375 GRLAIKAEQSNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQ---EPEAKAALIWILGEY 451 (734)
T ss_pred hhhhhhhhhhhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccC---ChHHHHHHHHHHhhh
Confidence 766421 1127789999999986666788999999999999998876555444433333222 356777788888888
Q ss_pred CCcHHHHHH
Q 045023 396 SDLHGYTVR 404 (812)
Q Consensus 396 p~l~~~~v~ 404 (812)
.+.-..+..
T Consensus 452 ~~~i~~a~e 460 (734)
T KOG1061|consen 452 AERIENALE 460 (734)
T ss_pred hhccCcHHH
Confidence 776554443
No 48
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.29 E-value=1.2 Score=52.55 Aligned_cols=240 Identities=13% Similarity=0.200 Sum_probs=143.9
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCC-CcceeccC-CCc---------------hhHHH
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFR-DPNIRKKP-KCL---------------DGLVK 168 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~-~pyVRKkA-~~v---------------~~lv~ 168 (812)
.+.+++-|+.|.++|||--.=|+.+...+.==++.|.|.++....++ ++--|... |++ ..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 45689999999999999999999888888777888899999988885 55555554 222 22333
Q ss_pred HHHHHhcCCCCCccccccCCChhHHHHHHHHHHh--cC-CCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh
Q 045023 169 TLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHV--LG-QGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMS 245 (812)
Q Consensus 169 ~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~--l~-~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~ 245 (812)
++...+. |.---|+++..+.. +. -..|--.+.|+.+|.-+-....+.+..+-+-.+.|+-.++.
T Consensus 557 ii~~gl~-------------De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigylip 623 (1172)
T KOG0213|consen 557 IIEHGLK-------------DEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIP 623 (1172)
T ss_pred HHHHhhc-------------ccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccc
Confidence 3333322 22222223222221 11 01122235566666554443333444555566666666665
Q ss_pred cCCChh---HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC---HHHHHH-hHhhhccccccc----CHhHHHHHHH
Q 045023 246 IEDNGG---LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD---AQAVQR-HRATILECVKDL----DASIRKRALE 314 (812)
Q Consensus 246 i~~~~~---L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~---p~~v~~-h~~~i~~cL~d~----D~sIr~~aLe 314 (812)
+..... .-.-+.-++.+=..+.|.+.|-++|..+.+.+..+ |..+.. -...||+|.... |.---+.-.+
T Consensus 624 lmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ 703 (1172)
T KOG0213|consen 624 LMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVD 703 (1172)
T ss_pred cccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHH
Confidence 432211 22223456666678899999999999999988754 444332 223444444321 1111122336
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhh
Q 045023 315 LVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 315 ll~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~ 358 (812)
+...+|++--...+|..++.-+.+..+.||+.....+..+..+.
T Consensus 704 ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l 747 (1172)
T KOG0213|consen 704 TTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL 747 (1172)
T ss_pred HHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc
Confidence 77778888888888888888777777788887777777666554
No 49
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.20 E-value=0.026 Score=51.56 Aligned_cols=101 Identities=18% Similarity=0.211 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH-----HhHhhhcccccccCHhHHHHHHHHHHHhcCCCCH--H--
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ-----RHRATILECVKDLDASIRKRALELVYLLVNESNV--K-- 326 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~-----~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv--~-- 326 (812)
++..|..+|.+.++.+|..++.+|..+....+.... .-...++.++.++|..+++.++..+..|+..... .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 467778888888899999999999999876544332 2345577888999999999999999999876631 1
Q ss_pred ---HHHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 327 ---PLTKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 327 ---~Iv~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
.+++.|..++...+.+.++.++..++.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 146667777777788888888888877763
No 50
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.18 E-value=0.93 Score=52.43 Aligned_cols=258 Identities=12% Similarity=0.155 Sum_probs=148.4
Q ss_pred chHHHHHHHHHHh---cCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhccccccc
Q 045023 233 NAILYECVETIMS---IEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVKDL 304 (812)
Q Consensus 233 ~aVl~e~v~~i~~---i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~ 304 (812)
-.+++-|..++.. +--.+.+. ..+..+.+.|.++.+++|.-|++.+..+...- ...+...-..+.+.|.++
T Consensus 580 ~~~il~~f~tv~vsl~~r~kp~l~-~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ 658 (975)
T COG5181 580 VGLILPCFSTVLVSLEFRGKPHLS-MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED 658 (975)
T ss_pred ccEEEecccceeeehhhccCcchH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc
Confidence 3455555544432 22234443 45677778899999999999999877665431 223333333345677788
Q ss_pred CHhHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhhhcCHHHHHHHHHH---HHHHHhhhCCchhHH--HHHHHHH
Q 045023 305 DASIRKRALELVYLLVNESN-------VKPLTKELIDYLEISDQEFKGDLTAK---ICSMVEKFSPDKIWY--IDQMLKV 372 (812)
Q Consensus 305 D~sIr~~aLell~~l~n~~N-------v~~Iv~eLl~yl~~~d~~~~~~li~~---I~~la~k~~~~~~w~--vd~ll~l 372 (812)
++.+--..|.-++.+.+-.- +..|+..|.--|+.-...+...-|.- ||..+-.|.+..+|. .--|+++
T Consensus 659 ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~ 738 (975)
T COG5181 659 YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDS 738 (975)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 88777666766666665543 55777777777776555555544444 444444578888883 1224455
Q ss_pred HhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchH-HHHHHHHHhhhhcccccccCccccccCCCCccCh
Q 045023 373 LSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQE-SLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTE 451 (812)
Q Consensus 373 L~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~-~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~ 451 (812)
|+.-...+.......|-- |.+.-.-| .++..|.+.|+-..-++ .-..+++-++|||+....
T Consensus 739 Lks~nKeiRR~A~~tfG~-Is~aiGPq-dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfs---------------- 800 (975)
T COG5181 739 LKSWNKEIRRNATETFGC-ISRAIGPQ-DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFS---------------- 800 (975)
T ss_pred HHHhhHHHHHhhhhhhhh-HHhhcCHH-HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchh----------------
Confidence 555443343333322211 11110111 23344455444211121 123567888999986531
Q ss_pred hhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHccCCCC----hHHHHHHHHHhhCCCChHHHHHHHH
Q 045023 452 SDAVDVVEIAIKHHSSD-ITTKAMAMVALLKLSSRFPSC----SERIRDIIVQNKGSLVLELQQRSIE 514 (812)
Q Consensus 452 ~~vi~~l~~~l~~~~~~-~~vk~~iLtAl~KL~~r~p~~----~~~i~~ll~~~~~s~~~evqqRA~e 514 (812)
+ +-.++..+.++ ..||.-+|-|.+-+|-+..+. .-.|..+|+.+..|.|+-=||-|--
T Consensus 801 --V---lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 801 --V---LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred --h---HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH
Confidence 2 22334443333 478999999999998877432 2345668888888888887776543
No 51
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=3.3 Score=47.91 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=171.5
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHcCCCC-------CChhHHHHHhhc-cCCCCchhHHHHHHHHhcccchhHHHHHH--
Q 045023 38 RAAINENDQDYRHRNLAKLMFIHMLGYPT-------HFGQMECLKSIA-SAGFPEKRIGYLGLMLLLDERQEVLMLVT-- 107 (812)
Q Consensus 38 r~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~~~~~evikli~-s~~~~~KRlgYL~~~~ll~~~~el~~L~~-- 107 (812)
-..+.+++...+..+..++--+...+.+- +......++++. ..+...+--.-.++..++...+|..-.++
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 34444556666777777776666666542 233445556665 33455666677777777776555432222
Q ss_pred ---HHHHhhcCCCCHhHHHHHHHHHhccC-chhhHHHH------HHHHHHhccCCCc--ceeccCCCchhHHHHHHHHhc
Q 045023 108 ---NSLKQDLNHTNQYIVGLALCALGNIC-SAEMARDL------APEVERLLQFRDP--NIRKKPKCLDGLVKTLRDVVN 175 (812)
Q Consensus 108 ---Nsl~kDL~s~n~~i~~lAL~~Ls~I~-~~e~~~~l------~~~V~~ll~~~~p--yVRKkA~~v~~lv~~L~~L~~ 175 (812)
-.|-+=+.|++..++.-|.-+||||. ....+|++ .+.+..++...++ .+|.. .=.|.++..
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~-------tW~LsNlcr 224 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA-------TWTLSNLCR 224 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH-------HHHHHHHHc
Confidence 23667789999999999999999994 45556653 4455555555544 33322 223333333
Q ss_pred CC-CCCcccc-----------ccCCChhHHHHHHHHHHhcCCCCchhhhHHH--HHHHHHhhccccCCCCcchHHHHHHH
Q 045023 176 SP-YAPEYDI-----------AGITDPFLHIRLLKLLHVLGQGDADASDCMN--DILAQVATKTESNKNAGNAILYECVE 241 (812)
Q Consensus 176 ~~-~~pe~~~-----------~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~--diL~~v~~~~~~~kn~~~aVl~e~v~ 241 (812)
.+ .+|.++. ....|+=......-.++++..+..+..+.+. .+..++..... +....|+--|++
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLR 301 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALR 301 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHh
Confidence 32 3333321 1224554555555555655554444444332 12333332221 234456677888
Q ss_pred HHHhcCCChh-HH-----HHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHH
Q 045023 242 TIMSIEDNGG-LR-----VLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIR 309 (812)
Q Consensus 242 ~i~~i~~~~~-L~-----~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr 309 (812)
++-+|-...+ .. ..+...|..++. +....+|--|..++..|..-.++-+|. -...++.+|...|..+|
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r 381 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR 381 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence 8887643222 11 123556777777 445559999999999998877654443 23457789999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Q 045023 310 KRALELVYLLVNESNVKPLTKELIDYLEI 338 (812)
Q Consensus 310 ~~aLell~~l~n~~Nv~~Iv~eLl~yl~~ 338 (812)
+.|.=.+..++...+ .+.+.||.+
T Consensus 382 KEAawaIsN~ts~g~-----~~qi~yLv~ 405 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGT-----PEQIKYLVE 405 (514)
T ss_pred HHHHHHHHhhcccCC-----HHHHHHHHH
Confidence 999999999998888 555566654
No 52
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.07 E-value=2.1 Score=49.26 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred CCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCC----cchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccc
Q 045023 228 NKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRD----NNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 303 (812)
Q Consensus 228 ~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d----~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d 303 (812)
..|+++---|-++-.+.++..... ++...|.+.+.++. .--.....+....++..+++++...+..+-.-|+|
T Consensus 199 ~Pn~~~isqYHalGlLyq~kr~dk---ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~ 275 (898)
T COG5240 199 EPNGNPISQYHALGLLYQSKRTDK---MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSD 275 (898)
T ss_pred CCCCChHHHHHHHHHHHHHhcccH---HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcC
Confidence 446666667888888877654322 34455555553321 11233445666777888999988888777777888
Q ss_pred cCHhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc
Q 045023 304 LDASIRKRALELVYLLVNES----NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA 376 (812)
Q Consensus 304 ~D~sIr~~aLell~~l~n~~----Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~ 376 (812)
.-.++-..+-..+.++..++ -+...|.-|..||.......|-.+++.+..+|.+||..-..|=.-+-.++...
T Consensus 276 k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~ 352 (898)
T COG5240 276 KFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDE 352 (898)
T ss_pred cchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcc
Confidence 76788877777777755443 36677788888998888888888999999999999865443333333444433
No 53
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.79 E-value=0.43 Score=52.69 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=66.3
Q ss_pred ChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHH
Q 045023 68 FGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVER 147 (812)
Q Consensus 68 ~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ 147 (812)
...-.+++++.++++..|.-+..++..+-.+ -++..+.+-|.+.++.+|..|..+||.+..++-++.+...+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------EAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------HHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Confidence 3455667788888888887777665554332 3567788889999999999999999999999988877666555
Q ss_pred hccCCCcceeccC
Q 045023 148 LLQFRDPNIRKKP 160 (812)
Q Consensus 148 ll~~~~pyVRKkA 160 (812)
|.+.+||+.|
T Consensus 117 ---d~~~~vR~~a 126 (335)
T COG1413 117 ---DENEGVRAAA 126 (335)
T ss_pred ---CCcHhHHHHH
Confidence 8999999998
No 54
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=5.7 Score=46.72 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=90.2
Q ss_pred cchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhhhcCHHHHHHH
Q 045023 269 NNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNV-KPLTKELIDYLEISDQEFKGDL 347 (812)
Q Consensus 269 ~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv-~~Iv~eLl~yl~~~d~~~~~~l 347 (812)
.++|-.|...+..++...|..-.+....+++.++|+...+|.+|+.-|..|++.--+ ++.++.+++-|++...+.|..+
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 579999999999999999998888889999999999999999999999888765332 2355556666666666666554
Q ss_pred HHHHHHHHhhhCC--chhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 045023 348 TAKICSMVEKFSP--DKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALY 407 (812)
Q Consensus 348 i~~I~~la~k~~~--~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~ 407 (812)
-.-++ ++ +|+. ...-|++-+++.|..-.+ =.+|+|..+.++=++++.+-...+.+++
T Consensus 467 ~elL~-~~-~~~d~~~i~m~v~~lL~~L~kyPq-Drd~i~~cm~~iGqnH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 467 RELLK-NA-RVSDLECIDMCVAHLLKNLGKYPQ-DRDEILRCMGRIGQNHRRLVLSNMGRFL 525 (823)
T ss_pred HHHHH-hc-CCCcHHHHHHHHHHHHHHhhhCCC-CcHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 43332 22 3432 222333444443333221 2567777777777776665544444444
No 55
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.78 E-value=1.2 Score=48.64 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcC--------C--
Q 045023 253 RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVN--------E-- 322 (812)
Q Consensus 253 ~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n--------~-- 322 (812)
..+.-+.+..-+.+.++.+|-.|+++|...+-.+.+....|...++.++..++..+|..||..++-+.- .
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 333344555667889999999999999999999999999999999999987899999999999887632 2
Q ss_pred -----CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 323 -----SNVKPLTKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 323 -----~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
.....+++-+.+|+...+++.+..++..++++--
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 2346788888999998899999999999998653
No 56
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=7.9 Score=48.32 Aligned_cols=336 Identities=16% Similarity=0.129 Sum_probs=181.3
Q ss_pred hhHHHHHh----hccCCCCchhHHHHHHHHhcccc----hhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHH
Q 045023 69 GQMECLKS----IASAGFPEKRIGYLGLMLLLDER----QEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARD 140 (812)
Q Consensus 69 ~~~evikl----i~s~~~~~KRlgYL~~~~ll~~~----~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~ 140 (812)
...|.+.+ ..|++...+-++.+-+..+...- .-.+.-+.+.|.+-++++...||..|+|+++.+.
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~------- 187 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA------- 187 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-------
Confidence 44555554 34677777777776666543221 1123345566777777766558888888776631
Q ss_pred HHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchh-hhHHHHHHH
Q 045023 141 LAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADA-SDCMNDILA 219 (812)
Q Consensus 141 l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~-~~~l~diL~ 219 (812)
..+.+...-++|-+..+|.++.++.+.+..+- .=.-..+++.|.-+....|.. ...+.+++.
T Consensus 188 ------~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-----------~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 188 ------EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-----------DDAAKSALEALIELLESEPKLLRPHLSQIIQ 250 (1075)
T ss_pred ------HHhccchHHHHHHHHHhHHHHHHhHhhhhccc-----------hHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 11111112222223467777777777765431 111233455554444433332 233444443
Q ss_pred ---HHhhccccCCCCcchHHHHHHHHHHhcCC-Chh-------HHHHHHHHHHHhh----------c-----CCC-cchH
Q 045023 220 ---QVATKTESNKNAGNAILYECVETIMSIED-NGG-------LRVLAINILGRFL----------S-----NRD-NNIR 272 (812)
Q Consensus 220 ---~v~~~~~~~kn~~~aVl~e~v~~i~~i~~-~~~-------L~~l~i~~L~~fL----------~-----~~d-~nir 272 (812)
+|+.| +.-++++.--++.+|..+.. -+. +....+-.+.... + ..+ .-..
T Consensus 251 ~~l~Ia~n----~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 251 FSLEIAKN----KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred HHHHHhhc----ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcH
Confidence 34443 33456666555555544321 111 1111111111111 0 011 1245
Q ss_pred HHHHHHHHHHHhhC-HHH-HHHhHhhhcccccccCHhHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhhhcCHHHH
Q 045023 273 YVALNMLMKAITVD-AQA-VQRHRATILECVKDLDASIRKRALELVYLLVN------ESNVKPLTKELIDYLEISDQEFK 344 (812)
Q Consensus 273 yvaL~~L~~l~~~~-p~~-v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n------~~Nv~~Iv~eLl~yl~~~d~~~~ 344 (812)
-.|.+.|-++...= |+. +-.-...+-..|.+.+-+=|+-+|--+..++. +.|+..|+.-.++++.+..+.+|
T Consensus 327 ~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr 406 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVR 406 (1075)
T ss_pred HHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence 56777777776442 222 22222334456788899999988888777654 34788888888889999999999
Q ss_pred HHHHHHHHHHHhhhCCchhHH-----HHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCC--cHHH---HHHHHHHHHhhc
Q 045023 345 GDLTAKICSMVEKFSPDKIWY-----IDQMLKVLSEAGN-FVKDEVWHALIVVISNASD--LHGY---TVRALYRAVQTS 413 (812)
Q Consensus 345 ~~li~~I~~la~k~~~~~~w~-----vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~--l~~~---~v~~L~~~l~~~ 413 (812)
-.++.+|+.++.-|+|...-+ ...++..+...++ .|-......+.......+. +..| .+.+++..+...
T Consensus 407 ~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 407 YAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998866433 2334555555544 4555556666665555442 3333 344344444432
Q ss_pred cchHHHHHHHHHhhhhcccc
Q 045023 414 IEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 414 ~~~~~l~~~~~WiiGEY~~~ 433 (812)
....++-.++=-||.-++-
T Consensus 487 -~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 487 -SKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred -CchhHHHHHHHHHHHHHHH
Confidence 2333444555556665553
No 57
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.61 Score=54.36 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 045023 253 RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKEL 332 (812)
Q Consensus 253 ~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eL 332 (812)
+.-+...|+.+..+.|.++|--|+..|+.+... -++=+-....-...+.|++..||+.|+.+++-..|--=..
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~------ 268 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP------ 268 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc------
Confidence 455566688888999999999999999988752 1211112233345688999999999999998766543200
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHH
Q 045023 333 IDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIV 390 (812)
Q Consensus 333 l~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~ 390 (812)
.--+..+.....++..+||.... |.+|-|.+..-=+--.-..+++|++.+.++
T Consensus 269 -~e~e~~e~kl~D~aF~~vC~~v~----D~sl~VRV~AaK~lG~~~~vSee~i~QTLd 321 (823)
T KOG2259|consen 269 -LERESEEEKLKDAAFSSVCRAVR----DRSLSVRVEAAKALGEFEQVSEEIIQQTLD 321 (823)
T ss_pred -ccchhhhhhhHHHHHHHHHHHHh----cCceeeeehHHHHhchHHHhHHHHHHHHHH
Confidence 00012344566677777777663 666766654322211223477888776654
No 58
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.44 E-value=0.27 Score=52.17 Aligned_cols=200 Identities=17% Similarity=0.263 Sum_probs=112.1
Q ss_pred CCCHhHHHHHHHHHhccCchhhHHHH------HHHHHHhccCCCcceeccCC--------------CchhHHH-HHHHHh
Q 045023 116 HTNQYIVGLALCALGNICSAEMARDL------APEVERLLQFRDPNIRKKPK--------------CLDGLVK-TLRDVV 174 (812)
Q Consensus 116 s~n~~i~~lAL~~Ls~I~~~e~~~~l------~~~V~~ll~~~~pyVRKkA~--------------~v~~lv~-~L~~L~ 174 (812)
+.+|+++..|+.++++.+.-...+++ .+.|.+++.+++|-||.+|- .+...+. ++++++
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 45799999999999998765554443 56788999999999998880 0111111 122222
Q ss_pred cCCCCCccccccCCChhHHHHHHHHHHhcCCCC---chhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChh
Q 045023 175 NSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGD---ADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGG 251 (812)
Q Consensus 175 ~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~---~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~ 251 (812)
. ...+-..|+.-||+|+.+...+ .-....+.+++..+.+ .+.-+-..+.++++.++.++.
T Consensus 104 s----------~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~-------G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 104 S----------SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSS-------GSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred c----------CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHc-------CChHHHHHHHHHHHHhccCHH
Confidence 1 1235668999999999987654 2234455555544332 133467899999999988776
Q ss_pred HHH-H----HHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCH
Q 045023 252 LRV-L----AINILGRFLSN-RDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNV 325 (812)
Q Consensus 252 L~~-l----~i~~L~~fL~~-~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv 325 (812)
+.. + +...+..++.. .+.++..-+|..+..|... ++ +......++ + ...+-|+.+..+ .
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~----~~---~~~~~~~~~-~-----~~~~~L~~~~~e--~ 231 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN----IK---KEAYVFVQD-D-----FSEDSLFSLFGE--S 231 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh----hC---cccceeccc-c-----CCchhHHHHHcc--H
Confidence 422 1 12233333333 2455555555544443211 00 000000111 0 112222233333 4
Q ss_pred HHHHHHHHHHhhhcCHHHHHHH
Q 045023 326 KPLTKELIDYLEISDQEFKGDL 347 (812)
Q Consensus 326 ~~Iv~eLl~yl~~~d~~~~~~l 347 (812)
+.+.++|..-+.+.|+|+|.++
T Consensus 232 ~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 232 SQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHcCCCHHHhhhc
Confidence 5677777777777888888765
No 59
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.84 Score=54.26 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=126.6
Q ss_pred chHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 233 NAILYECVETIMSIED-NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~-~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
.+-..||++-|+.+-. .... .....-..+-..+++.++|-++---|.+.+..+|+.----+.++-.-|+|++.-||-.
T Consensus 49 d~~KleAmKRIia~iA~G~dv-S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRas 127 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGKDV-SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRAS 127 (968)
T ss_pred cHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHH
Confidence 4567888888877532 2222 2233444566778899998888888888888888653334456666799999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHH
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVV 391 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~l 391 (812)
||..+..|==.-=+-.++-.+.+..++..+.+|+.+..+|-.+=.--+......++++-.+|......|...++-.|-.+
T Consensus 128 ALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 128 ALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEV 207 (968)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHh
Confidence 99999886544333344444444555556788888888887765444455556777777777777666766666666554
Q ss_pred HHhCCCc-HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccc
Q 045023 392 ISNASDL-HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 392 i~~~p~l-~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~ 433 (812)
.-+.=++ |.+ -++||..|.+ .+..+ ..+++-++-.|+..
T Consensus 208 CPerldLIHkn-yrklC~ll~d-vdeWg-QvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 208 CPERLDLIHKN-YRKLCRLLPD-VDEWG-QVVLINMLTRYARH 247 (968)
T ss_pred chhHHHHhhHH-HHHHHhhccc-hhhhh-HHHHHHHHHHHHHh
Confidence 3222222 332 3677777763 22222 34566677778644
No 60
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=95.23 E-value=9.4 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=14.9
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHH
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAI 283 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~ 283 (812)
|.+-+.-+.+|++.=+++.|..++
T Consensus 239 la~aldpr~pnmm~dvvkllsalc 262 (1102)
T KOG1924|consen 239 LARALDPREPNMMTDVVKLLSALC 262 (1102)
T ss_pred HHHhcCccCccHHHHHHHHHHHHh
Confidence 344455566777777777666654
No 61
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.19 E-value=1.9 Score=54.78 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=114.3
Q ss_pred CcchHHHHHHHHHHhcC-CChh---HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH--hHhhhccccccc
Q 045023 231 AGNAILYECVETIMSIE-DNGG---LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR--HRATILECVKDL 304 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~-~~~~---L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~--h~~~i~~cL~d~ 304 (812)
.+.-+.|+.++.|+..- ...+ ...-+.+.|..+|..+-.++|--||++|..|+..+|.++.+ -+..|-.-+.|.
T Consensus 788 ~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 788 NSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS 867 (1692)
T ss_pred CCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc
Confidence 34457788888877542 2222 22345666777788888999999999999999999977543 233455567799
Q ss_pred CHhHHHHHHHHHH--HhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCc
Q 045023 305 DASIRKRALELVY--LLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGN 378 (812)
Q Consensus 305 D~sIr~~aLell~--~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~ 378 (812)
-.++|.-||||+- -+++++-+...-+.+.+-+.+....+|+.+|+-++.+|+.++ ++.-.++.+.++|....+
T Consensus 868 sasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p-df~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP-DFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhcc
Confidence 9999999999995 677888899998888888877788899999999999999875 666788898888887543
No 62
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=9.9 Score=45.54 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=119.1
Q ss_pred HHHHhhcCCCCHhH-HHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC--------------CCchhHHHHHHH
Q 045023 108 NSLKQDLNHTNQYI-VGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--------------KCLDGLVKTLRD 172 (812)
Q Consensus 108 Nsl~kDL~s~n~~i-~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--------------~~v~~lv~~L~~ 172 (812)
=.|||-|.+.++.. ....=|+++ -..|.=+.+-.-|.+-|.++.|+++..| ..-|.++..|..
T Consensus 59 L~LKN~L~akd~~~k~~~~qRWl~--l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~ 136 (859)
T KOG1241|consen 59 LQLKNSLTAKDPERKQQYQQRWLQ--LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVS 136 (859)
T ss_pred HHHhhhhccCCHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHH
Confidence 34555555554332 234444441 2344445555555555665666665555 123444444443
Q ss_pred HhcCCCCCccccccCCChhHHHHHHHHHHhcCCC-Cch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh-cC--
Q 045023 173 VVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQG-DAD-ASDCMNDILAQVATKTESNKNAGNAILYECVETIMS-IE-- 247 (812)
Q Consensus 173 L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~-~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~-i~-- 247 (812)
-+...- | .-+.-.-|+.+.++|.. +|+ ..++-+++|+.|...+.. .-.+.+|.+.+.++++. ++
T Consensus 137 nv~~~~-~---------~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk-~e~s~~vRLaa~~aL~nsLef~ 205 (859)
T KOG1241|consen 137 NVGEEQ-A---------SMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRK-EETSAAVRLAALNALYNSLEFT 205 (859)
T ss_pred hccccc-c---------hHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccc-cCCchhHHHHHHHHHHHHHHHH
Confidence 332211 1 11234467777777754 444 344567888888764311 11355688888887764 11
Q ss_pred ---CChh-HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhc-----ccccccCHhHHHHHHHHHHH
Q 045023 248 ---DNGG-LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIL-----ECVKDLDASIRKRALELVYL 318 (812)
Q Consensus 248 ---~~~~-L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~-----~cL~d~D~sIr~~aLell~~ 318 (812)
-+.+ =|.........--.+.|..+|-.|+.+|.+|+.-+.+.+++|...-+ .-.++++..|+..++|.=..
T Consensus 206 ~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 206 KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0111 11111222222346789999999999999999998888888776522 23568888999999999999
Q ss_pred hcCCCCH
Q 045023 319 LVNESNV 325 (812)
Q Consensus 319 l~n~~Nv 325 (812)
+|.|++=
T Consensus 286 iceEEiD 292 (859)
T KOG1241|consen 286 ICEEEID 292 (859)
T ss_pred HHHHHHH
Confidence 9988763
No 63
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.00 E-value=0.54 Score=56.64 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHh--cCCCCHH
Q 045023 249 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLL--VNESNVK 326 (812)
Q Consensus 249 ~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l--~n~~Nv~ 326 (812)
.+++-.+++|.+.+=+.++++.+|-.||++|..+ ..++++......|..|+.|+..++|+.|.--++.+ .+++=+.
T Consensus 86 ~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~ 163 (757)
T COG5096 86 KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH 163 (757)
T ss_pred CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh
Confidence 4566678999999999999999999999999876 56788888889999999999999999998888777 4555566
Q ss_pred HH-HHHHHHHhh-hcCHHHHHHHHHHHHHHHhh
Q 045023 327 PL-TKELIDYLE-ISDQEFKGDLTAKICSMVEK 357 (812)
Q Consensus 327 ~I-v~eLl~yl~-~~d~~~~~~li~~I~~la~k 357 (812)
+. ..+++.++. +.|+...+.++.++..+...
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 66 555556554 67787777777777666543
No 64
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=2 Score=47.03 Aligned_cols=258 Identities=13% Similarity=0.147 Sum_probs=167.7
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH----hHhhhcccccccCHhHHHHHHHHHHHhcC-CCCHHHHH-----
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR----HRATILECVKDLDASIRKRALELVYLLVN-ESNVKPLT----- 329 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~----h~~~i~~cL~d~D~sIr~~aLell~~l~n-~~Nv~~Iv----- 329 (812)
|..-......++|..+..++..++..+.+-++- -..-+..+-+..|+-+++-++..|.+|+. .+|-+.+|
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGL 210 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCc
Confidence 333345667888999988888888765433221 11223445668889999999999999975 45666665
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHh------hhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHH---
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVE------KFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHG--- 400 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~------k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~--- 400 (812)
+-|..-+...|.+.+-.++.+|+.++. +.+......+..+++++..+.+.+.-.....+..+-... +-+.
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv 289 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIV 289 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHH
Confidence 567777788999999999999998874 245555568888999998888888777776666654432 2222
Q ss_pred --HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHH
Q 045023 401 --YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVA 478 (812)
Q Consensus 401 --~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtA 478 (812)
..+..+++.+++ ...+++.+-+.||...+-.-.+... +-+..+++-|.+++.. ....+.|+.....
T Consensus 290 ~ag~lP~lv~Llqs--~~~plilasVaCIrnisihplNe~l---------I~dagfl~pLVrlL~~-~dnEeiqchAvst 357 (550)
T KOG4224|consen 290 EAGSLPLLVELLQS--PMGPLILASVACIRNISIHPLNEVL---------IADAGFLRPLVRLLRA-GDNEEIQCHAVST 357 (550)
T ss_pred hcCCchHHHHHHhC--cchhHHHHHHHHHhhcccccCcccc---------eecccchhHHHHHHhc-CCchhhhhhHHHH
Confidence 234567777764 3445678888899766433222211 1123344545556542 3457899999999
Q ss_pred HHHHHccCCCChH------HHHHHHHHhhCCCChHHHHHHHHHHHHhccCHHHHHHhhh
Q 045023 479 LLKLSSRFPSCSE------RIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVE 531 (812)
Q Consensus 479 l~KL~~r~p~~~~------~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll~ 531 (812)
+--|+........ .|.++ ....-+..+++|.|-.-....|.-.+.-|..+++
T Consensus 358 LrnLAasse~n~~~i~esgAi~kl-~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld 415 (550)
T KOG4224|consen 358 LRNLAASSEHNVSVIRESGAIPKL-IELLLDGPVSVQSEISACIAQLALNDNDKEALLD 415 (550)
T ss_pred HHHHhhhhhhhhHHHhhcCchHHH-HHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh
Confidence 9888874421111 12222 2233466789999988888888655555555554
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.81 E-value=0.38 Score=49.91 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=78.7
Q ss_pred cchHHHHHHHHHHhcC----CC-hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhHhhhcccccc
Q 045023 232 GNAILYECVETIMSIE----DN-GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHRATILECVKD 303 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~----~~-~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~~~i~~cL~d 303 (812)
..+|.-+|+.++-.+. .. .......+..|.+.+.++...++--|-++|..++...+ .++. ..+.....+
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~---~~l~~~~~~ 142 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILL---EILSQGLKS 142 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHH---HHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHH---HHHHHHHhC
Confidence 3457766666655432 11 11233455666666677777788888888888887654 2222 233446778
Q ss_pred cCHhHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHH
Q 045023 304 LDASIRKRALELVYLLVNESN-----------VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYI 366 (812)
Q Consensus 304 ~D~sIr~~aLell~~l~n~~N-----------v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~v 366 (812)
..+.+|..+++.+..+++.-+ +..+++-+...+.+.+++.|...-..+..+...|+...++.+
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 888899999888888877777 355777777788888888888888888777777766655544
No 66
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=16 Score=45.95 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=81.5
Q ss_pred CChhHHHHHHHHHHhcCCCCch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhc---CCChhH----HHHHHHH
Q 045023 188 TDPFLHIRLLKLLHVLGQGDAD-ASDCMNDILAQVATKTESNKNAGNAILYECVETIMSI---EDNGGL----RVLAINI 259 (812)
Q Consensus 188 ~dpwlqv~lL~lL~~l~~~~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i---~~~~~L----~~l~i~~ 259 (812)
..+|.+..+|.++..+++..++ ....++.+..... +++++.|.--+-+.+-.+ .+-..+ .....|.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e------~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~ 701 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFE------NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNS 701 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhh------ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 4678899999999888764322 1222322222111 223455544444433332 221112 2334566
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhCH----HHHHHhHhhhcccccccCHhHHHHHHHHHHHhc
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAITVDA----QAVQRHRATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~~~~p----~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
|..-+.+...-.|+-.|.+|..|+...+ .++.+-+..++-|+++.|..-|+-|.++|+-|+
T Consensus 702 L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 702 LLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 6666677778889999999999988776 566666666666889999999999999999998
No 67
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=8.4 Score=49.52 Aligned_cols=201 Identities=14% Similarity=0.068 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHh---hcCccc
Q 045023 307 SIRKRALELVYLL--VNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFS-PDKIWYIDQMLKVLS---EAGNFV 380 (812)
Q Consensus 307 sIr~~aLell~~l--~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~-~~~~w~vd~ll~lL~---~~g~~v 380 (812)
+++..--++++.| +..+=+-.++++|..-|...+.++|.+++.-+|.+-..+. ...+.|-++.-..|. .....|
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~v 316 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEV 316 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhh
Confidence 4555555666554 5556666788899888888899999999999987754321 111223333333333 333456
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHH-H
Q 045023 381 KDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVV-E 459 (812)
Q Consensus 381 ~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l-~ 459 (812)
.=+++....+.+.++|+........+..-..+..........++-.+-+....... +.+. ++... +
T Consensus 317 R~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~------------~~~~-ll~~~~e 383 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLV------------YIPL-LLKLVAE 383 (1266)
T ss_pred hhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh------------hhHH-HHHHHHH
Confidence 67778788888888888765443333322221111222222222222222222110 0111 22222 2
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHccC------------------CC------------ChHHHHHHHHHhhCCCChHHH
Q 045023 460 IAIKHHSSDITTKAMAMVALLKLSSRF------------------PS------------CSERIRDIIVQNKGSLVLELQ 509 (812)
Q Consensus 460 ~~l~~~~~~~~vk~~iLtAl~KL~~r~------------------p~------------~~~~i~~ll~~~~~s~~~evq 509 (812)
+... ....||.+.|..++++|.+. |+ .+..|..+|..|.-..++++|
T Consensus 384 R~rD---Kk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q 460 (1266)
T KOG1525|consen 384 RLRD---KKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQ 460 (1266)
T ss_pred HHhh---hhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHH
Confidence 2221 24789999999999999861 11 123456788888889999999
Q ss_pred HHHHHHHHHhccCH
Q 045023 510 QRSIEFNSIVEKHQ 523 (812)
Q Consensus 510 qRA~ey~~Ll~~~~ 523 (812)
.|-.-+..+|...+
T Consensus 461 ~Rmk~l~~~l~~~D 474 (1266)
T KOG1525|consen 461 ERMKHLYQLLAGLD 474 (1266)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999997543
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.59 E-value=0.09 Score=45.12 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=43.7
Q ss_pred CeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEeCCCCC-CCeEEEEEEEEE
Q 045023 719 QTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQHGK-KPLVMRTRIAYK 793 (812)
Q Consensus 719 ~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n~~~~~-k~l~lr~klsY~ 793 (812)
..+.++++++|.+..++.++.+.+.+|.+|+..-.|.+...|+|++.. +-.+.|.-|.... ..-.++++++|+
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~--~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESV--TVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEE--EEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEE--EEEEEEECCCCCCCceEEEEEEEEeC
Confidence 357799999999999999999999999999977777666689997743 6667776654432 356677777774
No 69
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=94.12 E-value=0.96 Score=43.60 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=55.6
Q ss_pred ecCCeEEEEEeecCCC--CCCeEEEEEEEEeCCCccccceEEEEee-cCceeEeeeCCCCCCcCCCCCCCccEEEEE
Q 045023 701 ESSSLRLTFNFSKPPG--NPQTTLIQATFTNLSPNVYTDFVFQAAV-PKFLQLHLDPASGNTLPASGNGSITQTLRV 774 (812)
Q Consensus 701 ~~~~l~i~~~~~~~~~--~~~~~~i~~~~~n~~~~~i~~f~fq~AV-pK~~kL~l~p~S~~~l~~~~~~~itQ~~~i 774 (812)
..+||.+.+.|.|.+. ++.-+.|.++|+|++..+|+|+++-=.- |.+++++=.++-+. |+|++. ++=.|-|
T Consensus 65 ~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~-L~pg~s--~t~~lgI 138 (145)
T PF14796_consen 65 NGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIES-LEPGAS--VTVSLGI 138 (145)
T ss_pred CCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccc-cCCCCe--EEEEEEE
Confidence 6899999999999753 5667889999999999999999875544 55888888887666 888653 3544444
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.96 E-value=0.3 Score=43.93 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccc----ccccCHhHHHHHHHHHHH
Q 045023 253 RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILEC----VKDLDASIRKRALELVYL 318 (812)
Q Consensus 253 ~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~c----L~d~D~sIr~~aLell~~ 318 (812)
....+..+.+.+.+.|..+||.|.+.|..++......+-.|...||.. ..|.|.++|.-| ++|-.
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 344567777888999999999999999999988887777788887754 459999999876 55443
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.89 E-value=12 Score=42.73 Aligned_cols=170 Identities=17% Similarity=0.082 Sum_probs=115.9
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
...|.-++++.+-.+... .+...|..+|.+.++.+|+.++..+.... .+ .. ..+..+|+|.|.++|..
T Consensus 99 ~~~vr~aaa~ALg~i~~~-----~a~~~L~~~L~~~~p~vR~aal~al~~r~-~~--~~----~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGR-----QAEPWLEPLLAASEPPGRAIGLAALGAHR-HD--PG----PALEAALTHEDALVRAA 166 (410)
T ss_pred CHHHHHHHHHHHhcCCch-----HHHHHHHHHhcCCChHHHHHHHHHHHhhc-cC--hH----HHHHHHhcCCCHHHHHH
Confidence 345777777777666543 24567778889999999999997665421 22 11 23456788999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHH
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVV 391 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~l 391 (812)
|+..+-.+....-+.. |...+.+.|+++|.-.+..++.+... . -++.++.+....|.+....... ++.+
T Consensus 167 A~raLG~l~~~~a~~~----L~~al~d~~~~VR~aA~~al~~lG~~----~--A~~~l~~~~~~~g~~~~~~l~~-~lal 235 (410)
T TIGR02270 167 ALRALGELPRRLSEST----LRLYLRDSDPEVRFAALEAGLLAGSR----L--AWGVCRRFQVLEGGPHRQRLLV-LLAV 235 (410)
T ss_pred HHHHHHhhccccchHH----HHHHHcCCCHHHHHHHHHHHHHcCCH----h--HHHHHHHHHhccCccHHHHHHH-HHHh
Confidence 9999999887655544 44668889999999999998777542 1 2356666666677665544442 2222
Q ss_pred HHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccc
Q 045023 392 ISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 392 i~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~ 433 (812)
. ..+ .++..|...+.+. .....++|.+|..|+-
T Consensus 236 ~-~~~----~a~~~L~~ll~d~----~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 236 A-GGP----DAQAWLRELLQAA----ATRREALRAVGLVGDV 268 (410)
T ss_pred C-Cch----hHHHHHHHHhcCh----hhHHHHHHHHHHcCCc
Confidence 2 122 4666777766642 2678899999998874
No 72
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=4.3 Score=48.83 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhcCCC----CHhHHHHHHHHHhccC---chhhHHHHHHHHHHhccCCCcceeccC--------------
Q 045023 102 VLMLVTNSLKQDLNHT----NQYIVGLALCALGNIC---SAEMARDLAPEVERLLQFRDPNIRKKP-------------- 160 (812)
Q Consensus 102 l~~L~~Nsl~kDL~s~----n~~i~~lAL~~Ls~I~---~~e~~~~l~~~V~~ll~~~~pyVRKkA-------------- 160 (812)
+.-..+|.+.-||+++ +|..++-|+..+--.+ .++.+=.++|.+.+.|...++-|-+-|
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 3445678888899884 4788888888775543 466666777888887777655555544
Q ss_pred --------CCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCC----CchhhhHHHHHHHHHhhccccC
Q 045023 161 --------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQG----DADASDCMNDILAQVATKTESN 228 (812)
Q Consensus 161 --------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~----~~~~~~~l~diL~~v~~~~~~~ 228 (812)
.+.|.+...|.+|....-.|+ +..+||+.--|+|+++..... -+.....+.+++..++.|. +
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf~a~s~p~----~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP--s 606 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLFKALSLPG----KAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP--S 606 (960)
T ss_pred cccccchhhcchHHHHHHHHHHHhccCCc----ccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC--C
Confidence 245556666777775444443 356889999999999875322 1223334455555554432 1
Q ss_pred CCCcchHHHHHHHHHHhcC--CChhHHHHHHH----HHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc
Q 045023 229 KNAGNAILYECVETIMSIE--DNGGLRVLAIN----ILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK 302 (812)
Q Consensus 229 kn~~~aVl~e~v~~i~~i~--~~~~L~~l~i~----~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~ 302 (812)
+-..+.-+||++-.++... .++........ .+...|+..=.++-=.+++.|..++..+..-+-.....++.||-
T Consensus 607 ~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 607 NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 1124457899998888653 23332222222 22233333323444456676766665442211111222333333
Q ss_pred ccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHH
Q 045023 303 DLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFK 344 (812)
Q Consensus 303 d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~ 344 (812)
.+ -... ...|+-.+|.-|..|+......+.
T Consensus 687 sp--~lW~----------r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 687 SP--NLWK----------RSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred CH--HHHh----------hcCCcHHHHHHHHHHHhcCchhhc
Confidence 32 2222 367899999989899887655544
No 73
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.87 E-value=0.048 Score=47.31 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHhhc-CCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC
Q 045023 110 LKQDL-NHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP 160 (812)
Q Consensus 110 l~kDL-~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA 160 (812)
|.+-| +++|+++|..|+.+|+.+..++. .+.+.++++|++|.||..|
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a 51 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAA 51 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHH
Confidence 34444 56666666666666666665533 3444445566666666665
No 74
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=20 Score=42.06 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHHHhHhhhcccccccCHhHHHHHHHHHHH-----hcCCCCHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQRHRATILECVKDLDASIRKRALELVYL-----LVNESNVKPLT 329 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~-----l~n~~Nv~~Iv 329 (812)
.+..+..-|.+..+++|=.+..+|.++... +-.-+++|..++++|+.|+..+.. .+++.|.+ -+++.....|+
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLalmv 374 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLALMV 374 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHHHH
Confidence 455666677888899999999998888764 223489999999999998763333 34555543 36777788888
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVL 373 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL 373 (812)
.-|..=+...+.+.++..+.-++.+| +..+|..|....+-.++
T Consensus 375 piL~R~l~eRst~~kr~t~~IidNm~-~LveDp~~lapfl~~Ll 417 (569)
T KOG1242|consen 375 PILKRGLAERSTSIKRKTAIIIDNMC-KLVEDPKDLAPFLPSLL 417 (569)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHH-HhhcCHHHHhhhHHHHh
Confidence 88888888888889998888888888 45667778666665544
No 75
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.13 E-value=1.4 Score=48.07 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred hhhcccccccCHhHHHHHHHHH--HHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch----------
Q 045023 295 ATILECVKDLDASIRKRALELV--YLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK---------- 362 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell--~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~---------- 362 (812)
..|..++..+|..||.++++.+ +.+.+++...+-+.-+...+...+.+++..+++.|..+...|....
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 3355788899999999999997 6788999999999999998887899999999999999998875321
Q ss_pred ---hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhhc--cchHHHHHHHHHhhhhccc
Q 045023 363 ---IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL-HGYTVRALYRAVQTS--IEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 363 ---~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l-~~~~v~~L~~~l~~~--~~~~~l~~~~~WiiGEY~~ 432 (812)
.-.++.+.+.+......+..-++..+.+++-...-. ...++.+|+....+. ...+.+++...+.+=-|+.
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 124445555555443344444555555544322111 123333333322211 1233455555555555554
No 76
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.62 E-value=25 Score=41.00 Aligned_cols=423 Identities=12% Similarity=0.098 Sum_probs=207.8
Q ss_pred cCChHHHHHHHHHHHHHHHcCCCCCChhHH------HHHhhccCCCCchhHHHHHHHHhcccchhH--------------
Q 045023 43 ENDQDYRHRNLAKLMFIHMLGYPTHFGQME------CLKSIASAGFPEKRIGYLGLMLLLDERQEV-------------- 102 (812)
Q Consensus 43 ~~~~~~r~~~l~KLiyl~~lG~~~~~~~~e------vikli~s~~~~~KRlgYL~~~~ll~~~~el-------------- 102 (812)
.+|.+-...++-.+.-++|+-|++--.+|| .+..|.|++-+.+-..-=|++..++|.-|.
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn 311 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQN 311 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhh
Confidence 346666677777777777777776333333 345566777777777777776655543221
Q ss_pred -----------HHHHHHHHHhhcCC-----CCH-hHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-----
Q 045023 103 -----------LMLVTNSLKQDLNH-----TNQ-YIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP----- 160 (812)
Q Consensus 103 -----------~~L~~Nsl~kDL~s-----~n~-~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA----- 160 (812)
+--+-|.+.|.=.+ =|+ .-.+.-|...+..+...|.+.+...|++.+.+.++.=|-.|
T Consensus 312 ~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 312 HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhh
Confidence 11112223331111 122 23344466667788888888888888888888887777766
Q ss_pred ------------CCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccC
Q 045023 161 ------------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESN 228 (812)
Q Consensus 161 ------------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~ 228 (812)
+.++++++.+..+....+ .......-|..=.|=..+...-.......-.....+--+. |
T Consensus 392 Svm~gp~~~~lT~~V~qalp~i~n~m~D~~----l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~---D-- 462 (858)
T COG5215 392 SVMHGPCEDCLTKIVPQALPGIENEMSDSC----LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM---D-- 462 (858)
T ss_pred hhhcCccHHHHHhhHHhhhHHHHHhcccce----eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh---c--
Confidence 244555444443332110 0011122333222222221110000000000001110010 0
Q ss_pred CCCcchHHHHHHHHHHhc----CC-----ChhHHHHHHHHHHHh-----hcCCCcchHHHHHHHHHHHHhhCHHHHHHhH
Q 045023 229 KNAGNAILYECVETIMSI----ED-----NGGLRVLAINILGRF-----LSNRDNNIRYVALNMLMKAITVDAQAVQRHR 294 (812)
Q Consensus 229 kn~~~aVl~e~v~~i~~i----~~-----~~~L~~l~i~~L~~f-----L~~~d~niryvaL~~L~~l~~~~p~~v~~h~ 294 (812)
.+=+...|..+++.+ .. ++-+...--.+++.+ +..++.|.|-.+.++|..++...|+.|..-.
T Consensus 463 ---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~ 539 (858)
T COG5215 463 ---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL 539 (858)
T ss_pred ---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 112333343333332 10 111222112223222 2457899999999999999999998887755
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh----HHHHHHH
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI----WYIDQML 370 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~----w~vd~ll 370 (812)
.-|.. +-.++|+-...+- .|+-.+=+.++ -.|+...++.-+..++.++.++-+ -.+..++
T Consensus 540 a~~~~--------~~~~kl~~~isv~--~q~l~~eD~~~------~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~ 603 (858)
T COG5215 540 AGFYD--------YTSKKLDECISVL--GQILATEDQLL------VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFI 603 (858)
T ss_pred HHHHH--------HHHHHHHHHHHHh--hhhhhhHHHHH------HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 54432 2222233222110 00000000000 123445555666666777776443 4666777
Q ss_pred HHHhhc-CccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhc--cchHHHHHHHHHhhhhcccccccCccccccCCCC
Q 045023 371 KVLSEA-GNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTS--IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPI 447 (812)
Q Consensus 371 ~lL~~~-g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~--~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~ 447 (812)
++|... ...+-+|+...|-.+...-.+-.+.-+.+..-++... .....+..+++=++|..++.+... +
T Consensus 604 r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d--f------- 674 (858)
T COG5215 604 RILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD--F------- 674 (858)
T ss_pred HHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh--H-------
Confidence 777777 4456677776666655433332222233333333321 122334556666677666554211 0
Q ss_pred ccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC----CChHHHHHHHHHhhC
Q 045023 448 TVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP----SCSERIRDIIVQNKG 502 (812)
Q Consensus 448 ~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p----~~~~~i~~ll~~~~~ 502 (812)
.+=...+...|-..+.+....-.+|-.||..+.-++.... .-.+.|.-+++...+
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~ 733 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASE 733 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 0000112222333344444456889999999998887653 235677778877663
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.62 E-value=25 Score=40.99 Aligned_cols=241 Identities=14% Similarity=0.176 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCC-Cch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh-cCC------ChhHHHHHHHHHHH
Q 045023 192 LHIRLLKLLHVLGQG-DAD-ASDCMNDILAQVATKTESNKNAGNAILYECVETIMS-IED------NGGLRVLAINILGR 262 (812)
Q Consensus 192 lqv~lL~lL~~l~~~-~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~-i~~------~~~L~~l~i~~L~~ 262 (812)
+.+.-|.++...|.. +|+ ....-+.+|..+..... ..-...+|.+.+.++++. +.. ..+=|.........
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~-k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce 228 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGAL-KNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE 228 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhc-ccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh
Confidence 455566667666643 342 23333445554443211 111345777777777765 110 11112222223333
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhc-----ccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 045023 263 FLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIL-----ECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLE 337 (812)
Q Consensus 263 fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~-----~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~ 337 (812)
--.++|.+++..|.-+|.+|+.-+.+.++.|...-+ ...+++...|+..|.|.-..+|.|++=..+.. .|+.
T Consensus 229 atq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~---~~~p 305 (858)
T COG5215 229 ATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMED---KYLP 305 (858)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHH---hhcc
Confidence 346789999999999999999988888777665533 34568888999999999999998887544432 2222
Q ss_pred hc---CHHHHHH----HHHHHHHHHhhhC---CchhHHHH----HHHHHHh-hcCccchHHHHHHHHHHHHh--------
Q 045023 338 IS---DQEFKGD----LTAKICSMVEKFS---PDKIWYID----QMLKVLS-EAGNFVKDEVWHALIVVISN-------- 394 (812)
Q Consensus 338 ~~---d~~~~~~----li~~I~~la~k~~---~~~~w~vd----~ll~lL~-~~g~~v~~e~i~~i~~li~~-------- 394 (812)
.. +..|.+. ++-.+..+-+|-. .+..|-+. +.+++.. ..|+++-.-+|.-+-+-|+.
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHH
Confidence 21 1223322 2333344444422 12235443 2344432 34555555555333333321
Q ss_pred ----------CC--CcHHHHHHHHHHHHhhc-cch-HHHHHHHHHhhhhccccccc
Q 045023 395 ----------AS--DLHGYTVRALYRAVQTS-IEQ-ESLVRVAIWCIGEYGDMLVN 436 (812)
Q Consensus 395 ----------~p--~l~~~~v~~L~~~l~~~-~~~-~~l~~~~~WiiGEY~~~l~~ 436 (812)
.| +...+.|...+.-+... .++ --++..++||+|..++.+..
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~ 441 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM 441 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH
Confidence 12 23445566555544421 111 12466789999999887653
No 78
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.50 E-value=2.5 Score=44.97 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=102.6
Q ss_pred HHHHHhhc-CCCcchHHHHHHHHHHHHhhC--HHHHHH--hHhhhcccccccCHhHHHHHHHHHHHhcCCC-CHHHHHHH
Q 045023 258 NILGRFLS-NRDNNIRYVALNMLMKAITVD--AQAVQR--HRATILECVKDLDASIRKRALELVYLLVNES-NVKPLTKE 331 (812)
Q Consensus 258 ~~L~~fL~-~~d~niryvaL~~L~~l~~~~--p~~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~n~~-Nv~~Iv~e 331 (812)
..|..+|. ++|+-++..++-+|....... .+++.. -...|...|+++++.+|.+||..+..+.... |.. .++.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~-~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE-QIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-HHHH
Confidence 44555554 578999999999988865432 122222 1245677899999999999999999886544 433 3333
Q ss_pred HHHHhh----h--cCHHHHHHHHHHHHHHHhhh--CCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHH--
Q 045023 332 LIDYLE----I--SDQEFKGDLTAKICSMVEKF--SPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGY-- 401 (812)
Q Consensus 332 Ll~yl~----~--~d~~~~~~li~~I~~la~k~--~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~-- 401 (812)
.+..+- . .|.+......+.+..++... -.-..-++..++++|..+...+...+...+.. +..+|+...+
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n-LS~np~~~~~Ll 172 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVN-LSENPDMTRELL 172 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHH-hccCHHHHHHHH
Confidence 333221 1 35667777777777775432 12223477778888887655555555544333 3455654332
Q ss_pred ---HHHHHHHHHhhccchHHHHHHHHHhhhhcccccc
Q 045023 402 ---TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLV 435 (812)
Q Consensus 402 ---~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~ 435 (812)
++..+...+..+ ........++|+++--.+.+.
T Consensus 173 ~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 173 SAQVLSSFLSLFNSS-ESKENLLRVLTFFENINENIK 208 (254)
T ss_pred hccchhHHHHHHccC-CccHHHHHHHHHHHHHHHhhC
Confidence 334455444433 333445555666665554443
No 79
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.29 E-value=2.4 Score=48.98 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHHHHhc--CCCh---hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh----CHHHHHHhHhhhcccccccCH
Q 045023 236 LYECVETIMSI--EDNG---GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV----DAQAVQRHRATILECVKDLDA 306 (812)
Q Consensus 236 l~e~v~~i~~i--~~~~---~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~----~p~~v~~h~~~i~~cL~d~D~ 306 (812)
+..-+.+++.. ..++ ++....+..+.|++.++|.++||-.|+.|..++.. +..++-.-...+..-+.|...
T Consensus 67 il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~ 146 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK 146 (885)
T ss_pred HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH
Confidence 44455555542 3333 35555666777788888888888888888877643 223333334445555667777
Q ss_pred hHHHHHHHHHHHh
Q 045023 307 SIRKRALELVYLL 319 (812)
Q Consensus 307 sIr~~aLell~~l 319 (812)
.+|+.|+-.|...
T Consensus 147 ~VR~eAv~~L~~~ 159 (885)
T COG5218 147 AVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 80
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.17 E-value=4.3 Score=47.68 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc--CCCCHH
Q 045023 249 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLV--NESNVK 326 (812)
Q Consensus 249 ~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~--n~~Nv~ 326 (812)
+...++++...|.+|..+ =|+++=-|+++ ++++..|+|..||+.|+.=|-.+| |++.+.
T Consensus 35 ~~k~K~Laaq~I~kffk~-FP~l~~~Ai~a------------------~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH-FPDLQEEAINA------------------QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC--GGGHHHHHHH------------------HHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred CHHHHHHHHHHHHHHHhh-ChhhHHHHHHH------------------HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 455677788888887643 34555555544 445667899999999999999999 457899
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHh---hcCccchHHHHHHHHH
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLS---EAGNFVKDEVWHALIV 390 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~---~~g~~v~~e~i~~i~~ 390 (812)
.|++-|...|...|..-...+-.++..+-. .+..-.+..++.-+. ...+.+.+.++.-+..
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~---~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLK---QDPKGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 999999999987665444444444433332 344445666666665 3333445555544433
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.10 E-value=0.4 Score=41.42 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=41.0
Q ss_pred HHHHhh-cCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 045023 259 ILGRFL-SNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLE 337 (812)
Q Consensus 259 ~L~~fL-~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~ 337 (812)
.|.+.| .++++.+|..++..|..+- ++.+ ...++.+++|+|..+|+.|+.-|-.+-+ ...+..|...+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~l~ 72 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEA----IPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKLLQ 72 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHc
Confidence 344444 5566666666666655331 1222 2233445566666666666666666532 334444444444
Q ss_pred hcC-HHHHHHHHHHH
Q 045023 338 ISD-QEFKGDLTAKI 351 (812)
Q Consensus 338 ~~d-~~~~~~li~~I 351 (812)
+.+ ...|..++.++
T Consensus 73 ~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 73 DDDDEVVREAAAEAL 87 (88)
T ss_dssp C-SSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhc
Confidence 433 23355555544
No 82
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=91.43 E-value=27 Score=38.91 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 045023 252 LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKE 331 (812)
Q Consensus 252 L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~e 331 (812)
-.+++.+.+++|+.. .|++-..-...-++|..|+|..||+.|+.=|=..|..++...+.++
T Consensus 40 ~k~lasq~ip~~fk~-------------------fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~ 100 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKH-------------------FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDV 100 (460)
T ss_pred HHHHHHHHHHHHHhh-------------------CchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHH
Confidence 356788888888643 2222222233346899999999999999999999999999999988
Q ss_pred HHHHhhh
Q 045023 332 LIDYLEI 338 (812)
Q Consensus 332 Ll~yl~~ 338 (812)
|..-|..
T Consensus 101 l~qLLnk 107 (460)
T KOG2213|consen 101 LVQLLNK 107 (460)
T ss_pred HHHHHHH
Confidence 8887763
No 83
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.23 E-value=30 Score=39.53 Aligned_cols=224 Identities=17% Similarity=0.197 Sum_probs=116.1
Q ss_pred CchhHHHHHHHHhcccchhH-----HHHHHHHHHhhcCCCCHhHHHHHHHHHhccCch----hhHHHHHHHHHHhc-cCC
Q 045023 83 PEKRIGYLGLMLLLDERQEV-----LMLVTNSLKQDLNHTNQYIVGLALCALGNICSA----EMARDLAPEVERLL-QFR 152 (812)
Q Consensus 83 ~~KRlgYL~~~~ll~~~~el-----~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~----e~~~~l~~~V~~ll-~~~ 152 (812)
..+|+.+++...+..-++++ --++...+.-=+++.++..|-.+++.++.+.+. +..+.+...+..-+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 57888888888875444333 223333333335566799999999999988665 22223333332222 112
Q ss_pred CcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhc-cccCCCC
Q 045023 153 DPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATK-TESNKNA 231 (812)
Q Consensus 153 ~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~-~~~~kn~ 231 (812)
.+-.|.. .+..++=+.|.++..+ +|-..-.+-+++..+.. ++.....-+-+.-+... .+.....
T Consensus 243 ~~~~~~~--~~~~~~Wi~KaLv~R~-----------~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~ 307 (415)
T PF12460_consen 243 DSELRPQ--ALEILIWITKALVMRG-----------HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE 307 (415)
T ss_pred CcchhHH--HHHHHHHHHHHHHHcC-----------CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence 2222222 2444445566666544 22222223333333332 22211111111111110 0000001
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH-HHHHHhHhhh----cccccccCH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA-QAVQRHRATI----LECVKDLDA 306 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p-~~v~~h~~~i----~~cL~d~D~ 306 (812)
++++ +|.++ .+.+....+..|.....+.+...|-..|..|..++..-| .++..|...+ +++|.-+|.
T Consensus 308 ~~a~----vklLy----kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 308 NHAN----VKLLY----KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA 379 (415)
T ss_pred ccch----hhhHH----hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 1111 22222 122333334444444455555588888888888887665 5567777664 578888899
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHH
Q 045023 307 SIRKRALELVYLLVNESNVKPLTKE 331 (812)
Q Consensus 307 sIr~~aLell~~l~n~~Nv~~Iv~e 331 (812)
.++.-+|+++..+++++ ..++.+
T Consensus 380 ~v~~s~L~tL~~~l~~~--~~~i~~ 402 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEA--PELISE 402 (415)
T ss_pred HHHHHHHHHHHHHHHcC--HHHHHH
Confidence 99999999999998887 444443
No 84
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.04 E-value=25 Score=37.67 Aligned_cols=243 Identities=15% Similarity=0.152 Sum_probs=127.4
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHhhCH-HHHHH-----hHhhhcccccccCHhHHHHHHHHHHHhcCCCC-----HH
Q 045023 258 NILGRFLSNRDNNIRYVALNMLMKAITVDA-QAVQR-----HRATILECVKDLDASIRKRALELVYLLVNESN-----VK 326 (812)
Q Consensus 258 ~~L~~fL~~~d~niryvaL~~L~~l~~~~p-~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N-----v~ 326 (812)
.-||..|.+.|+.+|--|+..|..++..-| +.+.+ -...+...|.|. ..+. -+|.-+.+|++-++ +.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhCcCCChhhHH
Confidence 457888999999999999999999887644 33322 223344456433 3333 33666666665444 22
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHhhcC---ccchHHHHHHHHHHHHhCCCcHH-H
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFS-PDKIWYIDQMLKVLSEAG---NFVKDEVWHALIVVISNASDLHG-Y 401 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~-~~~~w~vd~ll~lL~~~g---~~v~~e~i~~i~~li~~~p~l~~-~ 401 (812)
.+++.+..... . ..++ ....+++..+..++.... .-..++.+..+++++.+..|=+- -
T Consensus 80 ~i~~~l~~~~~---~--------------q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl 142 (262)
T PF14500_consen 80 KILRSLFQNVD---V--------------QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLL 142 (262)
T ss_pred HHHHHHHHhCC---h--------------hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHH
Confidence 33333322111 0 1222 122344444444443322 23456778888888865444221 1
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 045023 402 TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLK 481 (812)
Q Consensus 402 ~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~K 481 (812)
.+.+++..+...........-..=++.=|-.....+++ .+|..||.+++...|+..+... +.=....+-..+=|
T Consensus 143 ~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~----~dp~~IT~edLk~~L~~cl~s~--~~fa~~~~p~LleK 216 (262)
T PF14500_consen 143 LSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPP----NDPYGITREDLKRALRNCLSST--PLFAPFAFPLLLEK 216 (262)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCC----CCCCCCCHHHHHHHHHHHhcCc--HhhHHHHHHHHHHH
Confidence 12333333322222223334444445556555444432 4666799999988887776431 22234455566678
Q ss_pred HHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhccCHHHHHHhh
Q 045023 482 LSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLV 530 (812)
Q Consensus 482 L~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll 530 (812)
|.+-.+..+....+.|..|...-.. +.-.+|+.-+ |..+|..++
T Consensus 217 L~s~~~~~K~D~L~tL~~c~~~y~~---~~~~~~~~~i--w~~lk~Eil 260 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKACIENYGA---DSLSPHWSTI--WNALKFEIL 260 (262)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHCCH---HHHHHHHHHH--HHHHHHHHc
Confidence 8887776666666666665543322 2334444433 556666554
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.99 E-value=14 Score=46.59 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=64.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHHHhH-hhhcccccccCHhHHHHHHHHHHHhcCCCC-----HHHHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQRHR-ATILECVKDLDASIRKRALELVYLLVNESN-----VKPLT 329 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~~h~-~~i~~cL~d~D~sIr~~aLell~~l~n~~N-----v~~Iv 329 (812)
...|..||..+|..+|-.-.+++.-+.-. .+..+..+. ..+.+-|.|..+-+=-+||.-+..||.-.+ +.+|+
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~ 698 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDIL 698 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 45666777777777777777776644321 122222222 223456667777777777777766666555 34455
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHhhhCC
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVEKFSP 360 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~k~~~ 360 (812)
++.+-||...+.-+|+.++.-|..+++++..
T Consensus 699 ~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 699 QDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 6666666666777777777777777766654
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.47 E-value=30 Score=39.61 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=122.8
Q ss_pred hcccccccCH---hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhhhc-----CHHHHHHHHHHHHHHHhhhCC-----ch
Q 045023 297 ILECVKDLDA---SIRKRALELVYLLVNESN-VKPLTKELIDYLEIS-----DQEFKGDLTAKICSMVEKFSP-----DK 362 (812)
Q Consensus 297 i~~cL~d~D~---sIr~~aLell~~l~n~~N-v~~Iv~eLl~yl~~~-----d~~~~~~li~~I~~la~k~~~-----~~ 362 (812)
++.-|.|.+. .-.++.|+.+..+|.+.- ++.++..|++-+... +.++...++..|..+.++... +.
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~ 83 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN 83 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH
Confidence 4455666665 677889999999998887 566777777776542 678889999999999887643 45
Q ss_pred hHHHH--HHHHHHhhc---C-cc-----chHHHHHHHHHHH-Hh-CCCcHHHHHHHHHHHHh----------hcc----c
Q 045023 363 IWYID--QMLKVLSEA---G-NF-----VKDEVWHALIVVI-SN-ASDLHGYTVRALYRAVQ----------TSI----E 415 (812)
Q Consensus 363 ~w~vd--~ll~lL~~~---g-~~-----v~~e~i~~i~~li-~~-~p~l~~~~v~~L~~~l~----------~~~----~ 415 (812)
.||.+ ++-+++... . .. -.-+.+..++..+ +. .++.|+..+.+++..+. ... .
T Consensus 84 ~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 163 (415)
T PF12460_consen 84 SWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQ 163 (415)
T ss_pred HHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccc
Confidence 89888 443333332 1 11 1113334444433 33 34567777888887665 111 1
Q ss_pred hHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCCh---HH
Q 045023 416 QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS---ER 492 (812)
Q Consensus 416 ~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~---~~ 492 (812)
+.........+++---.-.. .+ ...++++-+..+... ..++.+|...+-.++=+..|+++.. +.
T Consensus 164 ~~~~~~l~~~il~~l~~~~~---------~~---~~~~ll~~l~~~~~~-~~~~~~~~~~~~~la~LvNK~~~~~~l~~~ 230 (415)
T PF12460_consen 164 QSRLVILFSAILCSLRKDVS---------LP---DLEELLQSLLNLALS-SEDEFSRLAALQLLASLVNKWPDDDDLDEF 230 (415)
T ss_pred cccHHHHHHHHHHcCCcccC---------cc---CHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCChhhHHHH
Confidence 22233333333332211110 00 123344433333222 2347889999999999999986532 22
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 493 IRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 493 i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
+..++.....+.+.+.+.++.+.+.-+
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi 257 (415)
T PF12460_consen 231 LDSLLQSISSSEDSELRPQALEILIWI 257 (415)
T ss_pred HHHHHhhhcccCCcchhHHHHHHHHHH
Confidence 333333334577888999999988544
No 87
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=24 Score=38.37 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=126.8
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCCC---CHH--------HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNES---NVK--------PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI 363 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~~---Nv~--------~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~ 363 (812)
..+-.-|..+|.++|..++.-+..+.... -+. +|.+.+++|+-..|.+.....+..|.+++ .|+...+
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria-lfpaale 163 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALE 163 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHH
Confidence 33334566677788887777666554322 222 35567788888889999999999999888 3432222
Q ss_pred HHHH------HHH-HHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHhhccc--hHH-HHHHHHHhhhhccc
Q 045023 364 WYID------QML-KVLSEAGNFVKDEVWHALIVVISNASDLHGYTVR-ALYRAVQTSIE--QES-LVRVAIWCIGEYGD 432 (812)
Q Consensus 364 w~vd------~ll-~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~-~L~~~l~~~~~--~~~-l~~~~~WiiGEY~~ 432 (812)
-.+. +=+ .+-....+.+.--+..-|+.+.+-.|+.-.|+-. -|...+..... .+. ++..|+-+.-|..+
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 1111 111 1111122344455555566666666665444422 24444432211 121 22223333333332
Q ss_pred ccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC---ChHHHHH----HH-HHhh--C
Q 045023 433 MLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS---CSERIRD----II-VQNK--G 502 (812)
Q Consensus 433 ~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~---~~~~i~~----ll-~~~~--~ 502 (812)
.- .+..+ +..+.+||++-.++....+++--+.-.|.-..|++.+..- ..+.+.+ .+ ..+. .
T Consensus 244 te-Hgref--------laQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 244 TE-HGREF--------LAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred Hh-hhhhh--------cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence 21 11111 1235688988888876556666677677888898887521 1111111 11 1122 4
Q ss_pred CCChHHHHHHHHHHHHhccCHHHHHHhhhcCCCC
Q 045023 503 SLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVL 536 (812)
Q Consensus 503 s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~mP~~ 536 (812)
..|++.+.-|..-.-++.+..+=+..++..=||-
T Consensus 315 mnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 315 MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred cCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 7889999999999888876555555556555543
No 88
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=10 Score=47.55 Aligned_cols=256 Identities=17% Similarity=0.223 Sum_probs=151.4
Q ss_pred cccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhc
Q 045023 96 LDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVN 175 (812)
Q Consensus 96 l~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~ 175 (812)
....+.++-+++|.|+.++.+- +..++...++..-+...+-+++.. +.|+|.+.....+.++|-.-+.
T Consensus 162 e~~r~~~l~~i~~lLqinlskL----------~~~s~~~e~flsl~~~~~yrllEn--~~~~k~~~t~~ai~~ilg~s~k 229 (1251)
T KOG0414|consen 162 EKQRNKLLCLIAQLLQINLSKL----------WLTSVEDEDFLSLIVDPIYRLLEN--EHVNKNSSTKDAIFRILGSSVK 229 (1251)
T ss_pred ccccchHHHHHHHHHHhhHHHh----------cCCChhHHHHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHHHHH
Confidence 3445666777777777766431 122233445666666677788766 7788887555555555543332
Q ss_pred CCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHH
Q 045023 176 SPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVL 255 (812)
Q Consensus 176 ~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l 255 (812)
. ++.++- .+++||+.++.|.+ ......+.+..+.+ +....+++-..++.|....... -...
T Consensus 230 ~--------~~~~~t-~~~rilq~l~~feh----l~~~~ad~v~l~~s-----ky~~~sl~~~Iir~I~~~~~~~-~d~~ 290 (1251)
T KOG0414|consen 230 R--------YNQCST-FASRILQNLRYFEH----LAVHVADAVTLVRS-----KYGSVSLAGNIIRSIGSPEPNE-KDCA 290 (1251)
T ss_pred H--------hhhhhH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----hcccHHHHHHHHHHhcccchhc-cccc
Confidence 1 112222 37899999998876 44455566665554 2334456666667766543211 0011
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc----C----CCCHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLV----N----ESNVKP 327 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~----n----~~Nv~~ 327 (812)
+....+.|| ..+...-|...-+|...++..|+.....+|..-++++..++ + +.-.+.
T Consensus 291 g~k~v~~fL---------------~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~ 355 (1251)
T KOG0414|consen 291 GPKIVGNFL---------------VELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKS 355 (1251)
T ss_pred chhhHHHHH---------------HHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 233445554 33444557777777777777788788888888888877654 2 112333
Q ss_pred HHHHH----HHHhhhcCHHHHHHHHHHHHHHHhhhC-CchhH--HHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC
Q 045023 328 LTKEL----IDYLEISDQEFKGDLTAKICSMVEKFS-PDKIW--YIDQMLKVLSEAGNFVKDEVWHALIVVISNASD 397 (812)
Q Consensus 328 Iv~eL----l~yl~~~d~~~~~~li~~I~~la~k~~-~~~~w--~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~ 397 (812)
+-.++ .+.+.+.....|.+++.-...+++..+ |...| .+...+.-|......|...+++-+..++.++|-
T Consensus 356 ~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 356 LRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 33333 344445678888888888777777644 33333 344444445455567778888778888888874
No 89
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.88 E-value=2.2 Score=44.20 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhhCHH----HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC-HHHH-HHHHHHHhhhcCHHHH
Q 045023 271 IRYVALNMLMKAITVDAQ----AVQRHRATILECVKDLDASIRKRALELVYLLVNESN-VKPL-TKELIDYLEISDQEFK 344 (812)
Q Consensus 271 iryvaL~~L~~l~~~~p~----~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N-v~~I-v~eLl~yl~~~d~~~~ 344 (812)
+--.|+.++..++..-.. .+......++.++.|....|+..|-+.|..|+..-+ ...+ +..+......-++..|
T Consensus 69 v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR 148 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVR 148 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHH
Confidence 444445555555433222 233344556677888889999999999999999888 4566 5556666677889999
Q ss_pred HHHHHHHHHHHhhhC
Q 045023 345 GDLTAKICSMVEKFS 359 (812)
Q Consensus 345 ~~li~~I~~la~k~~ 359 (812)
..++..+..+.++++
T Consensus 149 ~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 149 EECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999999887
No 90
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=68 Score=40.66 Aligned_cols=314 Identities=17% Similarity=0.167 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC---CC-----hhHHHHHHHHHHHh
Q 045023 192 LHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE---DN-----GGLRVLAINILGRF 263 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~---~~-----~~L~~l~i~~L~~f 263 (812)
++..|..+|-.||...-+..+.+-++-.-+........ --..+++.+.+.++.-. .+ ..+-..+-|.|.++
T Consensus 494 l~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~l 572 (1176)
T KOG1248|consen 494 LVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRL 572 (1176)
T ss_pred HHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHH
Confidence 46677777777776544444444433322221111111 23456777777776543 11 11334456666666
Q ss_pred h---cCCCcch------HHHHHHHHH-HHHhhC-HHHHHHhHhhhcccccccCHhHHH----HHHHHHHHhc---CCCCH
Q 045023 264 L---SNRDNNI------RYVALNMLM-KAITVD-AQAVQRHRATILECVKDLDASIRK----RALELVYLLV---NESNV 325 (812)
Q Consensus 264 L---~~~d~ni------ryvaL~~L~-~l~~~~-p~~v~~h~~~i~~cL~d~D~sIr~----~aLell~~l~---n~~Nv 325 (812)
+ ....++- |--.|..+. .....- .+.+-.....+-....+.|.+++. .-|+++.+++ +++++
T Consensus 573 fn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v 652 (1176)
T KOG1248|consen 573 FNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV 652 (1176)
T ss_pred HHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH
Confidence 5 2222222 222333333 233333 345555666665555566666655 4567776665 66777
Q ss_pred HHHHHHHHHHhhhc-CHHHHHHHHHHHHHHHhhhCC---chhHHHHHHHHHHhhc----CccchHHHHHHHHHHHHhCC-
Q 045023 326 KPLTKELIDYLEIS-DQEFKGDLTAKICSMVEKFSP---DKIWYIDQMLKVLSEA----GNFVKDEVWHALIVVISNAS- 396 (812)
Q Consensus 326 ~~Iv~eLl~yl~~~-d~~~~~~li~~I~~la~k~~~---~~~w~vd~ll~lL~~~----g~~v~~e~i~~i~~li~~~p- 396 (812)
..+. ++..+...+ +...+...-+-+..+... ++ -....++.+.+.|..+ ..++.-+-...+..|+...+
T Consensus 653 s~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 653 SKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred HHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 7777 556655544 677887777777776654 11 2234566666665554 34455555666666666666
Q ss_pred ---CcHHHHHHHHHHHHhhccchHHHHHH---HHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc--CCC
Q 045023 397 ---DLHGYTVRALYRAVQTSIEQESLVRV---AIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH--SSD 468 (812)
Q Consensus 397 ---~l~~~~v~~L~~~l~~~~~~~~l~~~---~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~--~~~ 468 (812)
++....+..++-.+.+ .+....+. ++.+||-- ....+.+ ++| .++.+.-|-.++.-. ...
T Consensus 731 e~~~~i~k~I~EvIL~~Ke--~n~~aR~~Af~lL~~i~~i-~~~~d~g-----~e~----~~~~lnefl~~Isagl~gd~ 798 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSLKE--VNVKARRNAFALLVFIGAI-QSSLDDG-----NEP----ASAILNEFLSIISAGLVGDS 798 (1176)
T ss_pred HHHHHHHHHHHHHHHhccc--ccHHHHhhHHHHHHHHHHH-Hhhhccc-----ccc----hHHHHHHHHHHHHhhhcccH
Confidence 3344444444433332 22333444 44445531 2222111 112 122332222222211 123
Q ss_pred HHHHHHHHHHHHHHHccCCC-----ChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 469 ITTKAMAMVALLKLSSRFPS-----CSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 469 ~~vk~~iLtAl~KL~~r~p~-----~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
..++.+-|.|+.-++..+.+ ..+.+.+.+..|..+...||+.=|+-+.+.+-
T Consensus 799 ~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 799 TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45556657777777776633 24556667777888999999998887766553
No 91
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=27 Score=45.15 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=50.7
Q ss_pred HHHHhhccCCCCchhHHHHHH---HHhcccchhHHHHHH---HHHHhhcCCCCHhHHHHHHHHHhc---cCchhhHHHHH
Q 045023 72 ECLKSIASAGFPEKRIGYLGL---MLLLDERQEVLMLVT---NSLKQDLNHTNQYIVGLALCALGN---ICSAEMARDLA 142 (812)
Q Consensus 72 evikli~s~~~~~KRlgYL~~---~~ll~~~~el~~L~~---Nsl~kDL~s~n~~i~~lAL~~Ls~---I~~~e~~~~l~ 142 (812)
...+++.|++...|+.+.+-+ ..++...+++.+..- -.|..-|.+.|++++-.|=+-||= |+...+=..|.
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 344567788888888776443 335555555532211 345556778889988888887775 57777766666
Q ss_pred HHHHHhccC
Q 045023 143 PEVERLLQF 151 (812)
Q Consensus 143 ~~V~~ll~~ 151 (812)
..+.+-|.-
T Consensus 902 ~sL~~tl~~ 910 (1702)
T KOG0915|consen 902 DSLVNTLTG 910 (1702)
T ss_pred HHHHHHHhc
Confidence 666555544
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.28 E-value=8.9 Score=42.21 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=114.9
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC------CchhHHHHHHHHhcCCC
Q 045023 105 LVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK------CLDGLVKTLRDVVNSPY 178 (812)
Q Consensus 105 L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~------~v~~lv~~L~~L~~~~~ 178 (812)
.....+.+.+.++++.+|..|...++.+...+.++ .+.+++.+.++.||..|. -.+..+..|..++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~----~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-- 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVP----LLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-- 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHH----HHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc--
Confidence 45677888899999999999999999999887654 577789999999999881 112333333333321
Q ss_pred CCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccC-----CCCcchHHHHHHHHHHhcCCChhHH
Q 045023 179 APEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESN-----KNAGNAILYECVETIMSIEDNGGLR 253 (812)
Q Consensus 179 ~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~-----kn~~~aVl~e~v~~i~~i~~~~~L~ 253 (812)
..+.+......+.|..++.. .. +..++..+....... ...-..+...++..+..+...
T Consensus 117 --------d~~~~vR~~aa~aL~~~~~~--~a---~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~---- 179 (335)
T COG1413 117 --------DENEGVRAAAARALGKLGDE--RA---LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP---- 179 (335)
T ss_pred --------CCcHhHHHHHHHHHHhcCch--hh---hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh----
Confidence 23445555555555554432 11 222222221110000 000002334444444444322
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLT 329 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv 329 (812)
.++..+..++.+.+..+|..+...|..+......+. ..+...+.|++..+|.+++..+..+-.+.....++
T Consensus 180 -~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~----~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~ 250 (335)
T COG1413 180 -EAIPLLIELLEDEDADVRRAAASALGQLGSENVEAA----DLLVKALSDESLEVRKAALLALGEIGDEEAVDALA 250 (335)
T ss_pred -hhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHH----HHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHH
Confidence 234566667777777888888888887765542222 23445567778888888888777766665555554
No 93
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.05 E-value=7 Score=39.52 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh---CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc
Q 045023 252 LRVLAINILGRFLSNRDNNIRYVALNMLMKAITV---DAQAVQRHRATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 252 L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~---~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
+.+.....+.++..+.+..+|+.|++.+..+++. +|.-.- .+++-+.-|++..||.+|.+++..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cv---p~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCV---PTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHH---hHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 3333444444455566667777777766666653 454443 33444455666777777666665543
No 94
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.04 E-value=1.6 Score=39.49 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=42.5
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCC--CCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhh
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNE--SNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEK 357 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~--~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k 357 (812)
..++.++++++..+|..++..+..++.. .+... +++.|+.++...++..+..++..++.++..
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 3355667777788888888888888764 33333 334566666666777777777777777653
No 95
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.63 E-value=34 Score=35.91 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHhcCCCh-hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcc-------cccc
Q 045023 232 GNAILYECVETIMSIEDNG-GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILE-------CVKD 303 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~-~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~-------cL~d 303 (812)
++.+....++++-.+.... .....+++.|..+........+|++++.+.++...++..+...+..+.. ...+
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~ 93 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSS 93 (234)
T ss_pred ChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCC
Confidence 3445555555555554433 4555677788787777777789999999999998887665333222222 1222
Q ss_pred cCH------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc
Q 045023 304 LDA------SIRKRALELVYLLVNESNVKPLTKELIDYL-EISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA 376 (812)
Q Consensus 304 ~D~------sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl-~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~ 376 (812)
.+. +++.-.-++.. .+++....++..+..++ ...++..+...+..|..+++.-.-+..-..+++.+-+
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~--~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l--- 168 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICC--SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL--- 168 (234)
T ss_pred CcchHHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc---
Confidence 222 11211222222 35558999999999999 7888888999999999998654444443335555545
Q ss_pred CccchHHHHHHHHHHHHh
Q 045023 377 GNFVKDEVWHALIVVISN 394 (812)
Q Consensus 377 g~~v~~e~i~~i~~li~~ 394 (812)
+..-...+...++.++.-
T Consensus 169 ~~~~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 169 SLDYRPLVLKSLCSLFAL 186 (234)
T ss_pred CCccchHHHHHHHHHHHH
Confidence 333455555555555443
No 96
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.47 E-value=39 Score=39.96 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=86.4
Q ss_pred HHHHHHhc-CCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCH---hHHHHHHH
Q 045023 239 CVETIMSI-EDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDA---SIRKRALE 314 (812)
Q Consensus 239 ~v~~i~~i-~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~---sIr~~aLe 314 (812)
|...|-.. ..-|+|...|++.+..++...|..||--|++.|-.++..+|+.+.+-...+.++|..+|. .+-+.+|-
T Consensus 42 aaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 42 AAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34444443 456788899999999999999999999999999999998899999988888888987664 34445665
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhh---hcCHHHHHHHHHHHHHHHhh-----hCC---chhHHHHHHHHHHhhcCccchHH
Q 045023 315 LVYLLVNESNVKPLTKELIDYLE---ISDQEFKGDLTAKICSMVEK-----FSP---DKIWYIDQMLKVLSEAGNFVKDE 383 (812)
Q Consensus 315 ll~~l~n~~Nv~~Iv~eLl~yl~---~~d~~~~~~li~~I~~la~k-----~~~---~~~w~vd~ll~lL~~~g~~v~~e 383 (812)
-++.+= .+..+.-|..++. ..|+..|..++.-|..-... +.| ..+..++.+-++|. -|+.+
T Consensus 122 ~ll~~d----~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~----DVTae 193 (556)
T PF05918_consen 122 SLLKQD----PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ----DVTAE 193 (556)
T ss_dssp HHHHH-----HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT----T--HH
T ss_pred HHHhcC----cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH----hccHH
Confidence 555543 3444455555555 56777888877766533222 121 12233333444443 24444
Q ss_pred HHHHHHHHHHhC
Q 045023 384 VWHALIVVISNA 395 (812)
Q Consensus 384 ~i~~i~~li~~~ 395 (812)
-...++.+++..
T Consensus 194 EF~l~m~lL~~l 205 (556)
T PF05918_consen 194 EFELFMSLLKSL 205 (556)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhC
Confidence 444666766553
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=88.38 E-value=19 Score=41.05 Aligned_cols=234 Identities=15% Similarity=0.074 Sum_probs=139.0
Q ss_pred HHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchh
Q 045023 57 MFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAE 136 (812)
Q Consensus 57 iyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e 136 (812)
=.+-..| ..+.-.++..+....-...+........ ..+++. ++..+..-|.+.++.++.-|...|+.|..+.
T Consensus 46 dgL~~~G---~~a~~~L~~aL~~d~~~ev~~~aa~al~-~~~~~~----~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~ 117 (410)
T TIGR02270 46 DGLVLAG---KAATELLVSALAEADEPGRVACAALALL-AQEDAL----DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ 117 (410)
T ss_pred HHHHHhh---HhHHHHHHHHHhhCCChhHHHHHHHHHh-ccCChH----HHHHHHHHhcCCCHHHHHHHHHHHhcCCchH
Confidence 3355556 2355567777754444444444332222 223332 3677778888899999999999999999887
Q ss_pred hHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHH
Q 045023 137 MARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMND 216 (812)
Q Consensus 137 ~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~d 216 (812)
.... +.+++.+.+|+||..+ +..+..... + ..+.+..
T Consensus 118 a~~~----L~~~L~~~~p~vR~aa------------------------------------l~al~~r~~-~--~~~~L~~ 154 (410)
T TIGR02270 118 AEPW----LEPLLAASEPPGRAIG------------------------------------LAALGAHRH-D--PGPALEA 154 (410)
T ss_pred HHHH----HHHHhcCCChHHHHHH------------------------------------HHHHHhhcc-C--hHHHHHH
Confidence 7654 5556678888887543 222222111 1 1122222
Q ss_pred HHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhh
Q 045023 217 ILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRAT 296 (812)
Q Consensus 217 iL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~ 296 (812)
. +. +..+.|.-++++++-.+.... +...|...+.+.++.+|..|+..+..+-. +.++..
T Consensus 155 ~----L~------d~d~~Vra~A~raLG~l~~~~-----a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~---- 213 (410)
T TIGR02270 155 A----LT------HEDALVRAAALRALGELPRRL-----SESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGV---- 213 (410)
T ss_pred H----hc------CCCHHHHHHHHHHHHhhcccc-----chHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHH----
Confidence 2 21 357889999999998876542 23345566889999999999999977633 555432
Q ss_pred hcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHh
Q 045023 297 ILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLS 374 (812)
Q Consensus 297 i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~ 374 (812)
+.....+.+...+++..- ++++.-.. .++.-|...++. ...+..++.+++.+..- . .+..+++.+.
T Consensus 214 l~~~~~~~g~~~~~~l~~-~lal~~~~---~a~~~L~~ll~d--~~vr~~a~~AlG~lg~p--~----av~~L~~~l~ 279 (410)
T TIGR02270 214 CRRFQVLEGGPHRQRLLV-LLAVAGGP---DAQAWLRELLQA--AATRREALRAVGLVGDV--E----AAPWCLEAMR 279 (410)
T ss_pred HHHHHhccCccHHHHHHH-HHHhCCch---hHHHHHHHHhcC--hhhHHHHHHHHHHcCCc--c----hHHHHHHHhc
Confidence 222234555555554444 44444332 555555566554 34888888888876532 1 4455555554
No 98
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.17 E-value=11 Score=41.28 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=76.9
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCCCC---HH---HHHHHHHHHhhh----cCHHHHHHHHHHHHHHHhh--hCC--
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNESN---VK---PLTKELIDYLEI----SDQEFKGDLTAKICSMVEK--FSP-- 360 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~~N---v~---~Iv~eLl~yl~~----~d~~~~~~li~~I~~la~k--~~~-- 360 (812)
..++..+..+|.+|+..|+.++..++...+ .. +++..++.++.. .+.++..-++..+..+... |-.
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 445667888999999999999998865543 33 567777777764 4555666667777666531 211
Q ss_pred chhHHHHHHHHHHhhc---Cc----cchHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHhhccchHHHHHHHHHhhh
Q 045023 361 DKIWYIDQMLKVLSEA---GN----FVKDEVWHALIVVISNASDL-----HGYTVRALYRAVQTSIEQESLVRVAIWCIG 428 (812)
Q Consensus 361 ~~~w~vd~ll~lL~~~---g~----~v~~e~i~~i~~li~~~p~l-----~~~~v~~L~~~l~~~~~~~~l~~~~~WiiG 428 (812)
...-.+..+.++|... ++ -+..+++ -++.+++-+++. +.+.+..|.+.+.. ...+.+.+++++++-
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~-~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQAL-LCLWLLSFEPEIAEELNKKYLIPLLADILKD-SIKEKVVRVSLAILR 265 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHH-HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHH-HHHHHHhcCHHHHHHHhccchHHHHHHHHHh-cccchHHHHHHHHHH
Confidence 1134667777777211 11 1222222 222234444432 22466777777774 456778899888887
Q ss_pred hcccc
Q 045023 429 EYGDM 433 (812)
Q Consensus 429 EY~~~ 433 (812)
...+.
T Consensus 266 Nl~~~ 270 (312)
T PF03224_consen 266 NLLSK 270 (312)
T ss_dssp HTTSS
T ss_pred HHHhc
Confidence 66543
No 99
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.81 E-value=21 Score=35.22 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-HHHHHHhHhh----hccccc-ccCHhHHHHHHHHHHHhcCCCCHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVD-AQAVQRHRAT----ILECVK-DLDASIRKRALELVYLLVNESNVKP 327 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-p~~v~~h~~~----i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~~ 327 (812)
...+..+..+|.++++.-|+.|+..+..+++.. ++.+.+|-.. ++..|. .++..++..++..+..|
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l-------- 95 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL-------- 95 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--------
Confidence 345667888999999999999999999999886 7888666544 334444 34456666666555443
Q ss_pred HHHHHHHHhhhcCHHHHHH-HHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc
Q 045023 328 LTKELIDYLEISDQEFKGD-LTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398 (812)
Q Consensus 328 Iv~eLl~yl~~~d~~~~~~-li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l 398 (812)
+.++..- +++.++ ++-++. -++..+++++.. .++.+.+...+..++..+|..
T Consensus 96 -----~~~~~~~-p~l~Rei~tp~l~-----------~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 96 -----FDLIRGK-PTLTREIATPNLP-----------KFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred -----HHHhcCC-CchHHHHhhccHH-----------HHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 3344332 333333 233333 345566666654 567888898999999988874
No 100
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=86.23 E-value=30 Score=34.52 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 045023 311 RALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLK 371 (812)
Q Consensus 311 ~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~ 371 (812)
|.+.-+..=.++.|+..+++++.+.....+.+....++..|...|..-+.....|...+-.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~ 62 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA 62 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH
Confidence 3455555556699999999999998877789999999999999887766555555554444
No 101
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=22 Score=43.24 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=109.2
Q ss_pred hccccc-ccCHhHHHHHHHHHH---HhcCCCC-----HHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHhhhCCchhHHH
Q 045023 297 ILECVK-DLDASIRKRALELVY---LLVNESN-----VKPLTKELIDYLEI-SDQEFKGDLTAKICSMVEKFSPDKIWYI 366 (812)
Q Consensus 297 i~~cL~-d~D~sIr~~aLell~---~l~n~~N-----v~~Iv~eLl~yl~~-~d~~~~~~li~~I~~la~k~~~~~~w~v 366 (812)
++.=|. +.|+++...||.=+. .|.||+. ++.+|.-|..-+.. .+.++.-.+++++..+++-+|+.....|
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 333344 448888888775443 3446555 66788888887764 6789999999999999999998887777
Q ss_pred H------HHHHHHhhcCccchHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCc
Q 045023 367 D------QMLKVLSEAGNFVKDEVWHALIVVISNASD--LHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNV 438 (812)
Q Consensus 367 d------~ll~lL~~~g~~v~~e~i~~i~~li~~~p~--l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~ 438 (812)
| .+-+++.+.--.+.+.+...+-.|-+.+|. ++.-++...+.+|+ - -.-.+.++++-+...-+.-+...
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylD-F-FSi~aQR~AlaiaaN~Cksi~sd- 328 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLD-F-FSIHAQRVALAIAANCCKSIRSD- 328 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhcCCCc-
Confidence 7 234445554444678888888777777775 44444444444444 1 11123344444444444333210
Q ss_pred cccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC
Q 045023 439 GVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF 486 (812)
Q Consensus 439 ~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~ 486 (812)
++..| -|.+-+|..+|. +.+.....+...+++|++..|
T Consensus 329 ------~f~~v--~ealPlL~~lLs--~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 329 ------EFHFV--MEALPLLTPLLS--YQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred ------cchHH--HHHHHHHHHHHh--hccchhHHHHHHHHHHHHHhc
Confidence 11111 134445666665 346677778888888888776
No 102
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.88 E-value=3.7 Score=36.52 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=35.7
Q ss_pred hcccccccCHhHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC
Q 045023 297 ILECVKDLDASIRKRALELVYLLVNESN-----VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFS 359 (812)
Q Consensus 297 i~~cL~d~D~sIr~~aLell~~l~n~~N-----v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~ 359 (812)
++.-|.|+.+.||-.+|..|..++...+ +..|+.-++.++++.|..+=-.+|+.++.+|..|+
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3344556666666666666666654444 34445555555555555555566666666666554
No 103
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.74 E-value=82 Score=37.12 Aligned_cols=127 Identities=18% Similarity=0.271 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhHhhhcccccccCHhHHHHH
Q 045023 236 LYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHRATILECVKDLDASIRKRA 312 (812)
Q Consensus 236 l~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~~~i~~cL~d~D~sIr~~a 312 (812)
...++++|+.+...+......+..|.+|+. ...+.+| .+|+....++++-+..+|..+|.|.
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~---------------Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~ 111 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFE---------------YDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRS 111 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHH---------------hcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHH
Confidence 445666777766555544455566666653 2233344 3566667778888899999999999
Q ss_pred HHHHHHhcC------CCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC
Q 045023 313 LELVYLLVN------ESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG 377 (812)
Q Consensus 313 Lell~~l~n------~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g 377 (812)
|.+|..+.| +.=+..++..|.+-+-+.....|.+++..++.+-+.--.-......++..++....
T Consensus 112 lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnDP 182 (885)
T COG5218 112 LQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQNDP 182 (885)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCc
Confidence 999988753 45566677777777777788899999999988775433333445556666665543
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.32 E-value=3.1 Score=37.41 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHhhCHHHHHHhHhh----hcccccccCHhHHHHHHHHHHHhcC
Q 045023 270 NIRYVALNMLMKAITVDAQAVQRHRAT----ILECVKDLDASIRKRALELVYLLVN 321 (812)
Q Consensus 270 niryvaL~~L~~l~~~~p~~v~~h~~~----i~~cL~d~D~sIr~~aLell~~l~n 321 (812)
|.|+-+|-.|..++..-+.-+..|..+ ++.|+.|.|.-+|--|.|-++.++.
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISK 56 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 568888888888876555445555544 6789999999999999999998763
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=84.12 E-value=97 Score=36.61 Aligned_cols=216 Identities=14% Similarity=0.142 Sum_probs=125.2
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHH-----HHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKP-----LTK 330 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~-----Iv~ 330 (812)
+.++..-+....+-+|-+...+|..++.. .......|...+++|+...+..=|+.+-.-+..+++..-+.. ++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 44444445556677787888877766543 223344566777888998889999999999998888766655 445
Q ss_pred HHHHHhhhcCHHHHHHHHHHHH------HHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcH-HHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKIC------SMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLH-GYTV 403 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~------~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~-~~~v 403 (812)
.|...+..-....+++ ...++ .+..-|.|...-++-.++.......++|.+........+.+..+.-- ...+
T Consensus 178 ~l~~ai~dk~~~~~re-~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNRE-AALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL 256 (569)
T ss_pred HHHHHhcccchhhcHH-HHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence 5555665555556665 22221 12222334433344444444444556788888877777777655421 1122
Q ss_pred HHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 045023 404 RALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLS 483 (812)
Q Consensus 404 ~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~ 483 (812)
..+...+.+. ...-+.+++-++|=-++....- ......+++..+..++.+ +.+++|.+...++.|+.
T Consensus 257 psll~~l~~~--kWrtK~aslellg~m~~~ap~q---------Ls~~lp~iiP~lsevl~D--T~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 257 PSLLGSLLEA--KWRTKMASLELLGAMADCAPKQ---------LSLCLPDLIPVLSEVLWD--TKPEVRKAGIETLLKFG 323 (569)
T ss_pred hhhHHHHHHH--hhhhHHHHHHHHHHHHHhchHH---------HHHHHhHhhHHHHHHHcc--CCHHHHHHHHHHHHHHH
Confidence 3333444432 2234566777777443332110 011233555555555543 46899999999999988
Q ss_pred ccC
Q 045023 484 SRF 486 (812)
Q Consensus 484 ~r~ 486 (812)
...
T Consensus 324 svi 326 (569)
T KOG1242|consen 324 SVI 326 (569)
T ss_pred Hhh
Confidence 754
No 106
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=82.97 E-value=86 Score=37.38 Aligned_cols=88 Identities=23% Similarity=0.236 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCC--ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH--HHhH----hhhcccccccCH
Q 045023 235 ILYECVETIMSIED--NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV--QRHR----ATILECVKDLDA 306 (812)
Q Consensus 235 Vl~e~v~~i~~i~~--~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v--~~h~----~~i~~cL~d~D~ 306 (812)
++=..++.++..++ +.-++.-++.++..++.+.|.|+|-.+++.|..++-...+.+ +.++ ..|....+|+|.
T Consensus 439 ~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~ 518 (678)
T KOG1293|consen 439 TLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW 518 (678)
T ss_pred HHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH
Confidence 34444455666654 233566688999999999999999999999999986543322 2221 234555679999
Q ss_pred hHHHHHHHHHHHhcCC
Q 045023 307 SIRKRALELVYLLVNE 322 (812)
Q Consensus 307 sIr~~aLell~~l~n~ 322 (812)
-|...++.++-.++..
T Consensus 519 ~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 519 AVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999988765
No 107
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.57 E-value=56 Score=36.22 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCcc-hHHHHHHHHHHHHhh
Q 045023 256 AINILGRFLSNRDNN-IRYVALNMLMKAITV 285 (812)
Q Consensus 256 ~i~~L~~fL~~~d~n-iryvaL~~L~~l~~~ 285 (812)
+..+|.++|.-+|++ ++.-|.++|..++..
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 356788999888888 999999999988764
No 108
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.56 E-value=1.2e+02 Score=36.33 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHhhh----cCHHHHHHHHHHHHHHHhhh
Q 045023 323 SNVKPLTKELIDYLEI----SDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 323 ~Nv~~Iv~eLl~yl~~----~d~~~~~~li~~I~~la~k~ 358 (812)
..-.++++++.+.+.. ....++.-++.+.+.++.++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 3445555555555542 23445555566666555544
No 109
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=51 Score=36.43 Aligned_cols=143 Identities=23% Similarity=0.220 Sum_probs=66.7
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcC-ccchHHHHHHHHHHHHhCCCcHH-----HHH
Q 045023 335 YLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAG-NFVKDEVWHALIVVISNASDLHG-----YTV 403 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g-~~v~~e~i~~i~~li~~~p~l~~-----~~v 403 (812)
|++..+.++|..+..-|+.+++.-|+.-+- .+..|+.++...+ .+++.-+...+..+|++++--+. +-.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 555555555555555555555543322221 3344555555332 34555556666666666553211 112
Q ss_pred HHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 045023 404 RALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLS 483 (812)
Q Consensus 404 ~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~ 483 (812)
.-|...+........+++.++.+++-+-.--.... ..+++..+..++..+. .....+++...++++.++.
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~--------d~~~~~~f~~~~~~l~--~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE--------DIASSLGFQRVLENLI--SSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh--------hHHHHhhhhHHHHHHh--hccchhhhHHHHHHHHHHH
Confidence 23444444333344456666666655432111000 0011111112222111 1124688888888888888
Q ss_pred ccCC
Q 045023 484 SRFP 487 (812)
Q Consensus 484 ~r~p 487 (812)
..++
T Consensus 282 ~~~~ 285 (342)
T KOG2160|consen 282 SELS 285 (342)
T ss_pred HHHh
Confidence 7663
No 110
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.51 E-value=12 Score=46.88 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESN-VKPLTKELIDY 335 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N-v~~Iv~eLl~y 335 (812)
...|-+-|...++.+|-.|+-.|..++..+---|+.+....-.||.|++.-||..|=...-.|.+..| +-.++++++..
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSR 1079 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHh
Confidence 34444556778888999999999999988777788888888889999999999988866666666666 45566666666
Q ss_pred hhhc
Q 045023 336 LEIS 339 (812)
Q Consensus 336 l~~~ 339 (812)
|...
T Consensus 1080 Ls~~ 1083 (1251)
T KOG0414|consen 1080 LSNG 1083 (1251)
T ss_pred hccC
Confidence 6543
No 111
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=80.20 E-value=1.5 Score=34.47 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHhccCc------hhhHHHHHHHHHHhccCCCcceeccC
Q 045023 119 QYIVGLALCALGNICS------AEMARDLAPEVERLLQFRDPNIRKKP 160 (812)
Q Consensus 119 ~~i~~lAL~~Ls~I~~------~e~~~~l~~~V~~ll~~~~pyVRKkA 160 (812)
|.+|..|+.+||++.. ....+.+++.+.++|.|+++.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A 48 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAA 48 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4688999999998752 23455778888889999999999876
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.18 E-value=86 Score=38.57 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=52.3
Q ss_pred hcCCCcchHHHHHHHHHHHHhhCHHHHHH----hHhhhccccc-ccCHhHHHHHHHHHHHhcCCCCH----------HHH
Q 045023 264 LSNRDNNIRYVALNMLMKAITVDAQAVQR----HRATILECVK-DLDASIRKRALELVYLLVNESNV----------KPL 328 (812)
Q Consensus 264 L~~~d~niryvaL~~L~~l~~~~p~~v~~----h~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv----------~~I 328 (812)
+.++|...|..++..+..+++...-.++. -..-|+.... |+..-+||-|..++..+.+..-- ...
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 34455555777777777777654322222 2222333233 66788999999999888774431 134
Q ss_pred HHHHHHHhhhcCHH-HH---HHHHHHHHHHHhhh
Q 045023 329 TKELIDYLEISDQE-FK---GDLTAKICSMVEKF 358 (812)
Q Consensus 329 v~eLl~yl~~~d~~-~~---~~li~~I~~la~k~ 358 (812)
.++++.|.+..|.+ +| ..++..|-.+.++|
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~ 969 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEIQAALEND 969 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhc
Confidence 45666677654433 33 33444444444443
No 113
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=79.80 E-value=35 Score=38.49 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=83.8
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCHHHH----HHhHhh-hcccccc--cCHhHHHHHHHHHHHhcCCCC-H----HHHHH
Q 045023 263 FLSNRDNNIRYVALNMLMKAITVDAQAV----QRHRAT-ILECVKD--LDASIRKRALELVYLLVNESN-V----KPLTK 330 (812)
Q Consensus 263 fL~~~d~niryvaL~~L~~l~~~~p~~v----~~h~~~-i~~cL~d--~D~sIr~~aLell~~l~n~~N-v----~~Iv~ 330 (812)
++.+.+.++|-.|++.+..++.. +..+ +-|... |..||.- ....=|..||.++-++++-.+ . ..+++
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 44455588888888877666543 3332 223322 3455552 223456689999988877643 3 66788
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH--HHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW--YIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYT 402 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w--~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~ 402 (812)
-+..-.+..++.+|.-++..++.++-..|.-.-| -+.++++.+..+.-.+.+-++..++.++ +.|+.|.|.
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl 184 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYL 184 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhh
Confidence 8888888888889999999999988775532111 2333444444322225555666666655 566666544
No 114
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.88 E-value=60 Score=39.07 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHhhh----cCHHHHHHHHHHHHHHHhhhCCc--------------hhHHHHHHHHHHhhcCccchHHH
Q 045023 323 SNVKPLTKELIDYLEI----SDQEFKGDLTAKICSMVEKFSPD--------------KIWYIDQMLKVLSEAGNFVKDEV 384 (812)
Q Consensus 323 ~Nv~~Iv~eLl~yl~~----~d~~~~~~li~~I~~la~k~~~~--------------~~w~vd~ll~lL~~~g~~v~~e~ 384 (812)
.--.++++++...+.. .+..++..++.+++.++.++-.. .+-+++.+.+.+..+-..-..+-
T Consensus 427 ~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 506 (618)
T PF01347_consen 427 RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEE 506 (618)
T ss_dssp ---HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHH
T ss_pred CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHH
Confidence 3346777777776653 35668888888888887765333 22344445554443222212233
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHh
Q 045023 385 WHALIVVISNASDLHGYTVRALYRAVQTS-IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIK 463 (812)
Q Consensus 385 i~~i~~li~~~p~l~~~~v~~L~~~l~~~-~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~ 463 (812)
...+++-+.|-- +..++..|..++... ..+..++.+++|.+..+.+.. ++.+.+.+..++.
T Consensus 507 ~~~~LkaLgN~g--~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----------------~~~v~~~l~~I~~ 568 (618)
T PF01347_consen 507 KIVYLKALGNLG--HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----------------PEKVREILLPIFM 568 (618)
T ss_dssp HHHHHHHHHHHT---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHhhccC--CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----------------cHHHHHHHHHHhc
Confidence 333444444321 112344455555533 234456677888877664432 2345566666666
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChH
Q 045023 464 HHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLE 507 (812)
Q Consensus 464 ~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~e 507 (812)
+..++.++|......+++. .|. ...+..+.+.-.+..+.+
T Consensus 569 n~~e~~EvRiaA~~~lm~~---~P~-~~~l~~i~~~l~~E~~~Q 608 (618)
T PF01347_consen 569 NTTEDPEVRIAAYLILMRC---NPS-PSVLQRIAQSLWNEPSNQ 608 (618)
T ss_dssp -TTS-HHHHHHHHHHHHHT-------HHHHHHHHHHHTT-S-HH
T ss_pred CCCCChhHHHHHHHHHHhc---CCC-HHHHHHHHHHHhhCchHH
Confidence 6667778888777777762 253 344444443333444433
No 115
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.33 E-value=1.5e+02 Score=35.16 Aligned_cols=455 Identities=15% Similarity=0.143 Sum_probs=227.0
Q ss_pred CcchHHHHHHHHhccCCh-HHHHH-HHHHH-HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHH-------
Q 045023 6 SGTRLRDMIRSIRACKTA-AEERA-VVRKE-CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLK------- 75 (812)
Q Consensus 6 ~~~~L~~fI~~vr~~~t~-~eEr~-~i~~E-~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evik------- 75 (812)
+|..|..|.+++..---. +-|.+ --.+| +.-++..|++++.+-|+..+.-+=-+...|-++.|...+=+.
T Consensus 412 rgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f 491 (975)
T COG5181 412 RGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF 491 (975)
T ss_pred CCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH
Confidence 566677777777210000 00110 01222 223567789988777766665555577777776554443332
Q ss_pred ---hhccCCCCchhHHHHHHHHhcc--cchhHHHHHHHHHHhhcCCCC-H---hHHHHHHHHHhccCchhhHH----HHH
Q 045023 76 ---SIASAGFPEKRIGYLGLMLLLD--ERQEVLMLVTNSLKQDLNHTN-Q---YIVGLALCALGNICSAEMAR----DLA 142 (812)
Q Consensus 76 ---li~s~~~~~KRlgYL~~~~ll~--~~~el~~L~~Nsl~kDL~s~n-~---~i~~lAL~~Ls~I~~~e~~~----~l~ 142 (812)
-+++++-..|.+.|-...+ +. .++-+. --+..-+.++- | +..+++=|.++.++..++-+ .++
T Consensus 492 w~rr~A~dr~~~k~v~~ttvil-Ak~~g~~~v~----~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~ 566 (975)
T COG5181 492 WRRRSAGDRRSYKQVVLTTVIL-AKMGGDPRVS----RKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY 566 (975)
T ss_pred HHhhhcccccccceeehhHHHH-HHHcCChHHH----HHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH
Confidence 2455566666665543322 11 122222 22222233332 2 34566667777776655543 344
Q ss_pred HHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhH---HHHHHH
Q 045023 143 PEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDC---MNDILA 219 (812)
Q Consensus 143 ~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~---l~diL~ 219 (812)
..|...+.+.+.-+.---+|....+- +-++ -+-|++-.-+=.+|..+....|...+. +...|.
T Consensus 567 d~il~Afqeq~~t~~~il~~f~tv~v----------sl~~----r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~ 632 (975)
T COG5181 567 DSILNAFQEQDTTVGLILPCFSTVLV----------SLEF----RGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLA 632 (975)
T ss_pred HHHHHHHHhccccccEEEecccceee----------ehhh----ccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 45554444432211100000000000 0011 133444333333344443333333222 222233
Q ss_pred HHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH-HHHHH----hH
Q 045023 220 QVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA-QAVQR----HR 294 (812)
Q Consensus 220 ~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p-~~v~~----h~ 294 (812)
.++.+ .| ....|. .+-++|-..|-..++++-=..|..+..|...+. ...|+ -.
T Consensus 633 ~vlk~------c~---------------e~~~l~-klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~il 690 (975)
T COG5181 633 KVLKA------CG---------------ETKELA-KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGIL 690 (975)
T ss_pred HHHHh------cc---------------hHHHHH-HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcc
Confidence 23221 01 111222 233455555566677777777777766655431 11121 12
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNES-------NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYID 367 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~~-------Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd 367 (812)
..+.-.|++.-.-|.-..+.++-.+|... -|..|.=||++-|..-+.++|+.+....+-+++...|. -.++
T Consensus 691 P~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--dvL~ 768 (975)
T COG5181 691 PSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--DVLD 768 (975)
T ss_pred ccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--HHHH
Confidence 33334455555566666777777776543 47788899999999999999999999999988765543 5888
Q ss_pred HHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh--ccchHHHHHHHHHhhhhcccccccCccccccCC
Q 045023 368 QMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQT--SIEQESLVRVAIWCIGEYGDMLVNNVGVLNIED 445 (812)
Q Consensus 368 ~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~--~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~ 445 (812)
+|++-|+....+-.- +...-+.++.++-.... ++..|..-... ...+.++++++++.+---|+...+..+
T Consensus 769 ~LlnnLkvqeRq~Rv-ctsvaI~iVae~cgpfs-VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy------ 840 (975)
T COG5181 769 ILLNNLKVQERQQRV-CTSVAISIVAEYCGPFS-VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY------ 840 (975)
T ss_pred HHHhcchHHHHHhhh-hhhhhhhhhHhhcCchh-hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH------
Confidence 888877764322111 11122334444333221 22333322211 123566777777765333333222111
Q ss_pred CCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCC--hHHHHHHHHH---hhCCCChHHHHHHHHHHHHhc
Q 045023 446 PITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSC--SERIRDIIVQ---NKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 446 ~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~--~~~i~~ll~~---~~~s~~~evqqRA~ey~~Ll~ 520 (812)
.+.-+++..+.. .++.-|+...+-+--|+...|.. .+...-+++. ..-...+.++||-.|-..=|.
T Consensus 841 -------~itPlleDAltD--rD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~ 911 (975)
T COG5181 841 -------SITPLLEDALTD--RDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFA 911 (975)
T ss_pred -------HhhHHHHhhhcc--cchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHH
Confidence 122344444432 35677777888777888777653 3333444433 344778889999888665554
No 116
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.09 E-value=1.1e+02 Score=35.08 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=73.8
Q ss_pred CcchHHHHHHHHHHHHhhCHHHH-HHhHhh----hcccccc-cCHhHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 045023 268 DNNIRYVALNMLMKAITVDAQAV-QRHRAT----ILECVKD-LDASIRKRALELVYLLVNESN------VKPLTKELIDY 335 (812)
Q Consensus 268 d~niryvaL~~L~~l~~~~p~~v-~~h~~~----i~~cL~d-~D~sIr~~aLell~~l~n~~N------v~~Iv~eLl~y 335 (812)
...-|=-||..|..+.......| ..|..+ +++.|.| .|..||..||.+|-.||..+= .+..+..+++-
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 34456778888888887663322 344444 5667777 899999999999999987643 44455555555
Q ss_pred hhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHH
Q 045023 336 LEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVIS 393 (812)
Q Consensus 336 l~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~ 393 (812)
..+.+++..+.+...-..++..+-| ..||..+-.++..+.....--++..+.+++.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P--~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLP--LQCIVNISPLILTADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCc--hhHHHHHhhHHhcCcchHHHHHHHHHHHHHh
Confidence 5555555555444443333333333 3466666666666443333334444444443
No 117
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=77.91 E-value=63 Score=32.12 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=31.0
Q ss_pred cCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC
Q 045023 320 VNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFS 359 (812)
Q Consensus 320 ~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~ 359 (812)
.+++|+..++++|...... +++.+..++..|...+...+
T Consensus 11 Ls~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~ 49 (200)
T smart00543 11 LSPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEP 49 (200)
T ss_pred CCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCc
Confidence 4578999999999986643 46789999999888887655
No 118
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=77.13 E-value=30 Score=37.84 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcC------CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhccccc
Q 045023 234 AILYECVETIMSIE------DNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVK 302 (812)
Q Consensus 234 aVl~e~v~~i~~i~------~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~ 302 (812)
+++..+.=++-.+. ++-.-...++.+|.+++.+.|+++--=|+..+..+...-.+.++- .-..++++|.
T Consensus 216 smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs 295 (526)
T COG5064 216 SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS 295 (526)
T ss_pred HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence 56666666666552 222345568899999999999999988888888887554444332 2244778888
Q ss_pred ccCHhHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHH
Q 045023 303 DLDASIRKRALELVYLLVNESNVKP-------LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQML 370 (812)
Q Consensus 303 d~D~sIr~~aLell~~l~n~~Nv~~-------Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll 370 (812)
+++.-|..-||..+-.+++-+..++ .++.+..-|......+|++++=.|..+.---...... .+--|+
T Consensus 296 ~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi 375 (526)
T COG5064 296 HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLI 375 (526)
T ss_pred CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHH
Confidence 9999999999999999887776554 2234444445555678999888887765211111111 334577
Q ss_pred HHHhhcCccchHHHHHHHHHHHH---hCCCcHHH
Q 045023 371 KVLSEAGNFVKDEVWHALIVVIS---NASDLHGY 401 (812)
Q Consensus 371 ~lL~~~g~~v~~e~i~~i~~li~---~~p~l~~~ 401 (812)
++|+.+.-.+..|..-.+..... +.|+.-.|
T Consensus 376 ~lls~ae~k~kKEACWAisNatsgg~~~PD~iry 409 (526)
T COG5064 376 HLLSSAEYKIKKEACWAISNATSGGLNRPDIIRY 409 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCchHHHH
Confidence 78887766666665556666553 24554333
No 119
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.09 E-value=25 Score=41.97 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh----hCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc-CC
Q 045023 248 DNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAIT----VDAQAVQRHRATILECVKDLDASIRKRALELVYLLV-NE 322 (812)
Q Consensus 248 ~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~----~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~-n~ 322 (812)
...++....+..|.|+..++|.++||=+++.|..++. .+...+-.-...+..-++|.-+.+|+.|+-.|..+- ++
T Consensus 78 ~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 78 KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 3344555566667777777888888888887777764 334455555555666677777788888877777766 22
Q ss_pred CCH-HHHHHHHHHHhh-hcCHHHHHHHHHHH
Q 045023 323 SNV-KPLTKELIDYLE-ISDQEFKGDLTAKI 351 (812)
Q Consensus 323 ~Nv-~~Iv~eLl~yl~-~~d~~~~~~li~~I 351 (812)
.+= ..+++-+..-++ +.++|+|+.+...|
T Consensus 158 ~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 158 KDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred CCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 221 123333333333 23456666555444
No 120
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.47 E-value=4.5 Score=37.73 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=43.6
Q ss_pred HHHHHHhh-cCCCcchHHHHHHHHHHHHhhCHH---HHHH--hHhhhcccccccCHhHHHHHHHHHHHhc
Q 045023 257 INILGRFL-SNRDNNIRYVALNMLMKAITVDAQ---AVQR--HRATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 257 i~~L~~fL-~~~d~niryvaL~~L~~l~~~~p~---~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
+..|..+| .+.|+.+.-||+.=|..++..+|. ++++ ....|+.++.++|..||..||..+.+++
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44555556 445777777777777777777763 3432 3466888999999999999998877654
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=74.87 E-value=1.4e+02 Score=32.83 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=55.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHH
Q 045023 32 KECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 111 (812)
Q Consensus 32 ~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~ 111 (812)
.++.+.-..+.++....|..++..++-+...-|-.+|.. +...+++ ..+.
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~--------------------------~~~~tL~----~~~~ 92 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVE--------------------------DRRETLL----DALL 92 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHH--------------------------HHHHHHH----HHHH
Confidence 334444455666678888888888877766555433321 1112222 3444
Q ss_pred hhcCCCCHhHHHHHHHHHhcc--------CchhhHHHHHHHHHHhccCCCcce
Q 045023 112 QDLNHTNQYIVGLALCALGNI--------CSAEMARDLAPEVERLLQFRDPNI 156 (812)
Q Consensus 112 kDL~s~n~~i~~lAL~~Ls~I--------~~~e~~~~l~~~V~~ll~~~~pyV 156 (812)
|-++......+.+|++.++-+ ...++.+.+.|.+.+.+.+.+..+
T Consensus 93 k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~ 145 (309)
T PF05004_consen 93 KSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASP 145 (309)
T ss_pred HHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccch
Confidence 555444445566666655543 246788888888888888765443
No 122
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.88 E-value=2.1e+02 Score=34.63 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=76.2
Q ss_pred HHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCc
Q 045023 288 QAVQRHRATILECVKDLDASIRKRALELVYLLVNE------SNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPD 361 (812)
Q Consensus 288 ~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~------~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~ 361 (812)
++|+....+++.-....|-.+|.|.+.|+-.+.++ +=+..+.+.|+.-+.+-.+.+|.+++.+++.+-.-=-..
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 46777677778888899999999999999999882 224456666666776778889999999998876421111
Q ss_pred hhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHH
Q 045023 362 KIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTV 403 (812)
Q Consensus 362 ~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v 403 (812)
.--.+.++..++.... ++|+-.....-|...+.-..+++
T Consensus 161 e~~v~n~l~~liqnDp---S~EVRRaaLsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQNDP---SDEVRRAALSNISVDNSTLPCIV 199 (892)
T ss_pred cccHHHHHHHHHhcCC---cHHHHHHHHHhhccCcccchhHH
Confidence 1235666666666654 46666555555555544444443
No 123
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.20 E-value=3e+02 Score=36.06 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=115.4
Q ss_pred cchHHHHHHHHHHHHh-------hCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC-HH-HHHHHHHHHhhh-
Q 045023 269 NNIRYVALNMLMKAIT-------VDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESN-VK-PLTKELIDYLEI- 338 (812)
Q Consensus 269 ~niryvaL~~L~~l~~-------~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N-v~-~Iv~eLl~yl~~- 338 (812)
-.=+|..|.+|..+-. ...+++..+...|+..++++=.-.--.-++|+-.++++.| +. +.+.-|+..+-.
T Consensus 114 f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~ 193 (1266)
T KOG1525|consen 114 FKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKP 193 (1266)
T ss_pred hhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccC
Confidence 3445666777776651 1246788888888887754433222225566655544433 32 234444444322
Q ss_pred --cCHHHHHHHHHH-HHHHHhhhCCchhHHHHHHHHHHhhcC---ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh
Q 045023 339 --SDQEFKGDLTAK-ICSMVEKFSPDKIWYIDQMLKVLSEAG---NFVKDEVWHALIVVISNASDLHGYTVRALYRAVQT 412 (812)
Q Consensus 339 --~d~~~~~~li~~-I~~la~k~~~~~~w~vd~ll~lL~~~g---~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~ 412 (812)
.+......+... |..|+.+..++.. +.+.+.+.... ..+....-..+.++-+-.|++-..++.+|...|..
T Consensus 194 ~~~~~~~a~~la~~li~~~a~~~~~~i~---~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~s 270 (1266)
T KOG1525|consen 194 GRDTIKEADKLASDLIERCADNLEDTIA---NFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLS 270 (1266)
T ss_pred CCCccHHHHHHHHHHHHHhhhhhchhHH---HHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 222233333333 3344444444322 22333333222 22233334444445455677666677777766664
Q ss_pred ccchHH--HHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHccCCCC
Q 045023 413 SIEQES--LVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHS-SDITTKAMAMVALLKLSSRFPSC 489 (812)
Q Consensus 413 ~~~~~~--l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~-~~~~vk~~iLtAl~KL~~r~p~~ 489 (812)
+..... +...+.-+++++++.+.+ ..-+++..++.+.. .+.+||...+-...-...-.|+.
T Consensus 271 e~~~~Rl~a~~lvg~~~~~~~~~l~~----------------~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 271 EQEEVRLKAVKLVGRMFSDKDSQLSE----------------TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred chHHHHHHHHHHHHHHHhcchhhhcc----------------cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 322221 222333444455544431 12244555555432 36788888777776666666776
Q ss_pred hHHHHHHHHHhhCCCChHHHHHH
Q 045023 490 SERIRDIIVQNKGSLVLELQQRS 512 (812)
Q Consensus 490 ~~~i~~ll~~~~~s~~~evqqRA 512 (812)
...+...+.....+.|+++|-|.
T Consensus 335 ~~~~~~~~~l~~~~~D~~~rir~ 357 (1266)
T KOG1525|consen 335 AKASTILLALRERDLDEDVRVRT 357 (1266)
T ss_pred hhHHHHHHHHHhhcCChhhhhee
Confidence 66666666666677777777664
No 124
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.91 E-value=82 Score=40.16 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCcchHHHHHHHHHHHHhh--CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc------CCCCHH----HHHHHHHH
Q 045023 267 RDNNIRYVALNMLMKAITV--DAQAVQRHRATILECVKDLDASIRKRALELVYLLV------NESNVK----PLTKELID 334 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~--~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~------n~~Nv~----~Iv~eLl~ 334 (812)
+..+.|--||+.|..+... +...+.|-...++.|+.|++.-+|-.||+.|..+. +..|.. -|...|..
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 4567777788877777653 45667777788889999999999999999887663 344433 34444444
Q ss_pred Hhhh-cCHHHHHHHHHHHHHHHh
Q 045023 335 YLEI-SDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 335 yl~~-~d~~~~~~li~~I~~la~ 356 (812)
.+.+ .....|......|+.+|.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHH
Confidence 4444 233455555566666664
No 125
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=72.44 E-value=3.4e+02 Score=36.31 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHH
Q 045023 233 NAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRA 312 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~a 312 (812)
..+.-|.|..+-.|-.++. ...++..|..++.. ++.+.-..|++|..+- -+++....-+..++.+|..-+...==--
T Consensus 206 ~~lq~eiI~~LPeIl~ds~-h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~-Ls~~~l~~vr~~vl~~L~s~~~e~LP~l 282 (1426)
T PF14631_consen 206 VELQKEIISSLPEILDDSQ-HDEVVEELLELLQE-NPELTVPILDALSNLN-LSPELLEEVREKVLEKLSSVDLEDLPVL 282 (1426)
T ss_dssp TTTHHHHHHTHHHHS-GGG-HHHHHHHHHHHHHH--STTHHHHHHHHHHS----HHHHHHHHHHHHHSTTSS-TTHHHHH
T ss_pred HHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhc-CCchhhhHHHHHhcCC-CCHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence 3567787777777654432 34467788787754 5677777788777653 3466666667778888875444333344
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhh
Q 045023 313 LELVYLLVNESNVKPLTKELIDYLE 337 (812)
Q Consensus 313 Lell~~l~n~~Nv~~Iv~eLl~yl~ 337 (812)
+..|+.-++.+|..++|.+|-+.|.
T Consensus 283 irFLL~s~t~~da~evI~~LR~~L~ 307 (1426)
T PF14631_consen 283 IRFLLQSITPSDAVEVISELRENLD 307 (1426)
T ss_dssp HHHHHHS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccHHHHHHHHHHHcc
Confidence 5677778999999999999988774
No 126
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.96 E-value=23 Score=42.75 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-------hHhhhcccccccCHhHHHHHHHHHHHhcCCC-CHHHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-------HRATILECVKDLDASIRKRALELVYLLVNES-NVKPL 328 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-------h~~~i~~cL~d~D~sIr~~aLell~~l~n~~-Nv~~I 328 (812)
|..|..++...|--+|..+.+.|..++...|.-+|. -+++++..|.|.-.-||..++=+|..+++.+ +|..|
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 344555666667777777777777777665533332 1355778888988899999999999887653 34444
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC----ccchHHHHHHHHHHHHhCCC
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG----NFVKDEVWHALIVVISNASD 397 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g----~~v~~e~i~~i~~li~~~p~ 397 (812)
| .++-.++.|+.++...| ..|.+++..-+..++.++..
T Consensus 204 V-------------------------------AFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 204 V-------------------------------AFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred H-------------------------------HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 4 12335667777777654 46778888777777776544
No 127
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=71.47 E-value=51 Score=38.19 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH-Hh-hh-------------cCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc-
Q 045023 313 LELVYLLVNESNVKPLTKELID-YL-EI-------------SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA- 376 (812)
Q Consensus 313 Lell~~l~n~~Nv~~Iv~eLl~-yl-~~-------------~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~- 376 (812)
++=|..=+|.+|++.|+.||+. .+ +. +.+.|-.....-++.+-.+||..-+..+.-|+-.+..+
T Consensus 168 InglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r~f 247 (739)
T KOG2140|consen 168 INGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKRSF 247 (739)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Confidence 4445555889999999999986 22 11 12223333333344444566655555544443333332
Q ss_pred --CccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccc------hHHHHHHHHHhhhhcccccccCccccccCCCCc
Q 045023 377 --GNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIE------QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPIT 448 (812)
Q Consensus 377 --g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~------~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~ 448 (812)
.+++.--.+..++..+.++.-.|+-++-.++..|.+... .-++++.|-|-+.|-+....
T Consensus 248 ~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr~~------------- 314 (739)
T KOG2140|consen 248 RRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPRAL------------- 314 (739)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChHHH-------------
Confidence 123333333334443334444455443344444432211 12344444554444433321
Q ss_pred cChhhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 045023 449 VTESDAVDVVEIAIKHHSSDITTKAMAMVAL 479 (812)
Q Consensus 449 v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl 479 (812)
..|.+-|+.+|....-+..+|.+|=|++
T Consensus 315 ---n~IfErlR~ILhe~Eld~rvqy~iEtlf 342 (739)
T KOG2140|consen 315 ---NGIFERLRYILHEGELDRRVQYMIETLF 342 (739)
T ss_pred ---hHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 2466778877764333445555554443
No 128
>PF05536 Neurochondrin: Neurochondrin
Probab=71.30 E-value=1.7e+02 Score=34.82 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=127.6
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHhhCHHH------HHHhH--hhhcccccc-------cCHhHHHHHHHHHHHhcCC
Q 045023 258 NILGRFLSNRDNNIRYVALNMLMKAITVDAQA------VQRHR--ATILECVKD-------LDASIRKRALELVYLLVNE 322 (812)
Q Consensus 258 ~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~------v~~h~--~~i~~cL~d-------~D~sIr~~aLell~~l~n~ 322 (812)
....++|.+++-+-||+||-.+.+++..++.. |.... .++-++|+. +...-+..|+.+|.+.|..
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~ 87 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD 87 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 34456778888899999999999999865521 11111 122234443 4567888999999999988
Q ss_pred CCH------HHHHHHHHHHhhhcCH-HHHHHHHHHHHHHHhhhCCchhHHH-----HHHHHHHhhcCccchHHHHHHHHH
Q 045023 323 SNV------KPLTKELIDYLEISDQ-EFKGDLTAKICSMVEKFSPDKIWYI-----DQMLKVLSEAGNFVKDEVWHALIV 390 (812)
Q Consensus 323 ~Nv------~~Iv~eLl~yl~~~d~-~~~~~li~~I~~la~k~~~~~~w~v-----d~ll~lL~~~g~~v~~e~i~~i~~ 390 (812)
.++ ..-|+-|++.+...+. +...++...+..++ -++...+-.+ ..|.+++.. +.+..+.....+..
T Consensus 88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLN 165 (543)
T ss_pred hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 776 3455667777776666 89999999999888 5555554433 356666655 55667777777777
Q ss_pred HHHhCCC----cH----HHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHH
Q 045023 391 VISNASD----LH----GYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAI 462 (812)
Q Consensus 391 li~~~p~----l~----~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l 462 (812)
++..... -+ ..++..+...+... +...+--.+-+++.+-......+. ...+...=..++...++.++
T Consensus 166 Lls~~~~~~~~~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~---~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 166 LLSRLGQKSWAEDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPL---ESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHhcchhhhhhhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCcccc---ccCChhhhHHHHHHHHHHHH
Confidence 7665431 11 12333333333321 122233345556655443310000 00011111345666777888
Q ss_pred hccCCCHHHHHHHHHHHHHHHcc
Q 045023 463 KHHSSDITTKAMAMVALLKLSSR 485 (812)
Q Consensus 463 ~~~~~~~~vk~~iLtAl~KL~~r 485 (812)
++. .++.-|...+..++=+...
T Consensus 241 ~sr-~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 241 QSR-LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred hcC-CCHHHHHHHHHHHHHHHHH
Confidence 764 3466666666655555443
No 129
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.78 E-value=2.8 Score=31.45 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=29.4
Q ss_pred HHHHHHhhCHHHHH--HhHhhhcccccccCHhHHHHHHHHH
Q 045023 278 MLMKAITVDAQAVQ--RHRATILECVKDLDASIRKRALELV 316 (812)
Q Consensus 278 ~L~~l~~~~p~~v~--~h~~~i~~cL~d~D~sIr~~aLell 316 (812)
.|..++..+|+.+. .-+..|..++.|+++++|.-|++++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45667777777654 3345577789999999999999975
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=70.37 E-value=6.1 Score=30.99 Aligned_cols=48 Identities=19% Similarity=0.067 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHhHhh----hcccccccCHhHHHHHHHHHHH
Q 045023 271 IRYVALNMLMKAITVDAQAVQRHRAT----ILECVKDLDASIRKRALELVYL 318 (812)
Q Consensus 271 iryvaL~~L~~l~~~~p~~v~~h~~~----i~~cL~d~D~sIr~~aLell~~ 318 (812)
+|.-|+..|..+....+..++.|... ++.+|+|++..+|..|..-|-.
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 56666666666666666666665544 4456778888998888765543
No 131
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.93 E-value=22 Score=33.77 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=38.3
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV 290 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v 290 (812)
..+..+|.+..|-.-+ .--+-|+..|.+-|.++++++++.||..|-.++..-...|
T Consensus 17 D~~~il~icd~I~~~~---~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f 72 (133)
T cd03561 17 DWALNLELCDLINLKP---NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPF 72 (133)
T ss_pred cHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 3455556555554332 2224578888888899999999999999988886654433
No 132
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=69.68 E-value=2.4e+02 Score=34.20 Aligned_cols=224 Identities=14% Similarity=0.049 Sum_probs=119.6
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhH--hhhcccccccCHhHHHHHHHHHH--HhcCCCC--HHHHHHHHHHHhh-hc
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHR--ATILECVKDLDASIRKRALELVY--LLVNESN--VKPLTKELIDYLE-IS 339 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~--~~i~~cL~d~D~sIr~~aLell~--~l~n~~N--v~~Iv~eLl~yl~-~~ 339 (812)
+|+.-|+.-++.|.++...-|.-|..|+ ..+..-|.+....= ..|.+++ +-+-..| ...++..|..-++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp--~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVP--IVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccc--cccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 7999999999999999988887666543 22332232222111 1223333 3333333 4444455544333 23
Q ss_pred CHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc----CccchHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhhc
Q 045023 340 DQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA----GNFVKDEVWHALIVVIS--NASDLHGYTVRALYRAVQTS 413 (812)
Q Consensus 340 d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~----g~~v~~e~i~~i~~li~--~~p~l~~~~v~~L~~~l~~~ 413 (812)
..+..--++.++-.+.+|-++. ...+.++.+|..+ .-.+-++++..+-.+.. ..+-.++.++.++..... .
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~-~ 439 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAF-K 439 (700)
T ss_pred cccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchh-c
Confidence 4455556666666666665432 2344444444333 22333444422222211 122334444444444322 2
Q ss_pred cchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHccCCC----
Q 045023 414 IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH-SSDITTKAMAMVALLKLSSRFPS---- 488 (812)
Q Consensus 414 ~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~-~~~~~vk~~iLtAl~KL~~r~p~---- 488 (812)
..+-..+..++=|+|+..+.+... .++|.+.-+++.. ..++.+....+....++..+.++
T Consensus 440 tt~~~vkvn~L~c~~~l~q~lD~~---------------~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev 504 (700)
T KOG2137|consen 440 TTNLYVKVNVLPCLAGLIQRLDKA---------------AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV 504 (700)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee
Confidence 344456777888999988665422 3445555555543 33578888888888888887765
Q ss_pred ChHHHHHHHHHhhCCCChHHHH
Q 045023 489 CSERIRDIIVQNKGSLVLELQQ 510 (812)
Q Consensus 489 ~~~~i~~ll~~~~~s~~~evqq 510 (812)
..+.|.-++-.++....+-++|
T Consensus 505 ~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 505 MAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred ehhhhhhhhhhhhhcccccHHH
Confidence 2455555555555444455555
No 133
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=69.00 E-value=1.9e+02 Score=32.01 Aligned_cols=126 Identities=20% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHHHccCC-hHHHHHHHHHHHHHHHcCCCC--C-----ChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHH
Q 045023 35 AAIRAAINEND-QDYRHRNLAKLMFIHMLGYPT--H-----FGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLV 106 (812)
Q Consensus 35 a~Ir~~l~~~~-~~~r~~~l~KLiyl~~lG~~~--~-----~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~ 106 (812)
.-+-..|.+.. .-...++..-.+..+-.|.+- + -...-.-||+-+.+.+.--=+|.+++-+.|...|-.--+
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 33445555542 245668888888899999864 2 334445578888888888888999998887666543222
Q ss_pred HH-----HHHhhcCCCCHhHHHHHHHHHhccCchhh------HH-HHHHHHHHhccCCCcceeccC
Q 045023 107 TN-----SLKQDLNHTNQYIVGLALCALGNICSAEM------AR-DLAPEVERLLQFRDPNIRKKP 160 (812)
Q Consensus 107 ~N-----sl~kDL~s~n~~i~~lAL~~Ls~I~~~e~------~~-~l~~~V~~ll~~~~pyVRKkA 160 (812)
.+ .+..-|.|+.-.|+.-|||.+|||.+-.= ++ -..+....+|.++...|||.|
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEa 347 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA 347 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhh
Confidence 22 24456788999999999999999965322 11 145667778899888999999
No 134
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.82 E-value=68 Score=31.02 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
.-++.+|.+-.|-. ++.--+-|+..|.+-|.++++++.+.||..|-.++......|.
T Consensus 17 dw~~il~icD~I~~---~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh 73 (144)
T cd03568 17 NWGLILDVCDKVKS---DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFH 73 (144)
T ss_pred CHHHHHHHHHHHhc---CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34455555555432 1222245777888888899999999999999888876554444
No 135
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=68.38 E-value=2.9e+02 Score=37.74 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=23.9
Q ss_pred ccccCHhHHHHHHHHHHHhcC-------CCCHHHHHHHHH
Q 045023 301 VKDLDASIRKRALELVYLLVN-------ESNVKPLTKELI 333 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n-------~~Nv~~Iv~eLl 333 (812)
..|++..||.+||+.||.+.. .+.|..+...++
T Consensus 1356 ~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VL 1395 (1780)
T PLN03076 1356 SFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVL 1395 (1780)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 447899999999999998863 335666665433
No 136
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.53 E-value=47 Score=39.71 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=86.8
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc-ccCHhHHHHHHHHH--HHhcCCCCHHHHHHHHHHHhhhcCHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK-DLDASIRKRALELV--YLLVNESNVKPLTKELIDYLEISDQEF 343 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~-d~D~sIr~~aLell--~~l~n~~Nv~~Iv~eLl~yl~~~d~~~ 343 (812)
+|+.++-.|--+|.+++....+.+..|...++..+. .+++.||..|.==+ +.+|=..-+.+...-|..-+.+.|.++
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V 987 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADV 987 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHH
Confidence 789999999999999999999999999998887776 88899998765333 223333334444444444445567788
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc
Q 045023 344 KGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398 (812)
Q Consensus 344 ~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l 398 (812)
|+.+.-.|.-+.-+=--.-+-++-.|..+|......+++=+-.-+.++-.+....
T Consensus 988 ~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 988 RRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred HHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 8888877776554322222335555666666666566665555555555544333
No 137
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.76 E-value=53 Score=31.56 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV 290 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v 290 (812)
..-+...|.+-.|-. . +.--+-|+..|.+-|.++++++.+.||..|-.++..-...|
T Consensus 17 ~dw~~ileicD~In~-~--~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~f 73 (139)
T cd03567 17 EDWEAIQAFCEQINK-E--PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERF 73 (139)
T ss_pred CCHHHHHHHHHHHHc-C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 344566666666532 2 22234577888888899999999999999988887543333
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.88 E-value=52 Score=29.25 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC---CchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFS---PDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASD 397 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~---~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~ 397 (812)
...++.+.++.+..+-+|...+..+..++++.. .+..-.++.++..|+....||--.+|..+..+...+|+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 456777888888888899999999999998766 33445666677777777777766677666666665554
No 139
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.71 E-value=2.5e+02 Score=34.80 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=102.6
Q ss_pred CCChhHHHHHHHHHH-hcCCCCchh-----hhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhc----CCChhHHHH-
Q 045023 187 ITDPFLHIRLLKLLH-VLGQGDADA-----SDCMNDILAQVATKTESNKNAGNAILYECVETIMSI----EDNGGLRVL- 255 (812)
Q Consensus 187 ~~dpwlqv~lL~lL~-~l~~~~~~~-----~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i----~~~~~L~~l- 255 (812)
..||-.|+.-|.=|. .+.-.+.+. .+.+...|..++..- .+.-|...|+|++.++ +.+.+..+-
T Consensus 179 ~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~ 253 (1051)
T KOG0168|consen 179 ESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDE 253 (1051)
T ss_pred cCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecc
Confidence 347777776554443 333333222 234455555565421 2467888999998875 223232222
Q ss_pred -HHHHH-HHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH--hHhhhcccccccCHhHHHHHHHHHHHhcCC------CCH
Q 045023 256 -AINIL-GRFLSNRDNNIRYVALNMLMKAITVDAQAVQR--HRATILECVKDLDASIRKRALELVYLLVNE------SNV 325 (812)
Q Consensus 256 -~i~~L-~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~n~------~Nv 325 (812)
+|.+| +|++.-.--.+---+|++|-+|.+.+|.++-+ -....+..|+=-.+.+.|.||-+...+|.. +-|
T Consensus 254 ~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v 333 (1051)
T KOG0168|consen 254 HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV 333 (1051)
T ss_pred cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH
Confidence 44444 34443233334445788999999999876432 122222223333578999999999988843 335
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh
Q 045023 326 KPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI 363 (812)
Q Consensus 326 ~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~ 363 (812)
.+.++-|..-+...|.......+...+++++.|.+...
T Consensus 334 ~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~ 371 (1051)
T KOG0168|consen 334 MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPD 371 (1051)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChH
Confidence 55566666666777777778888888888888876554
No 140
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.60 E-value=50 Score=37.09 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=72.9
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc----ccCHhHHHHHHHHH----HHhcCCCCHHHHHHHHH
Q 045023 262 RFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK----DLDASIRKRALELV----YLLVNESNVKPLTKELI 333 (812)
Q Consensus 262 ~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~----d~D~sIr~~aLell----~~l~n~~Nv~~Iv~eLl 333 (812)
.-+.+.+.++|--||..|..++..+|..++-|...++.++. |+|-.+|.....++ +.+|-+. ..-.+.-+.
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~~l~~ 143 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMVSLLM 143 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchHHHHH
Confidence 44578889999999999999999999999999888887755 77778887665543 4455555 445555555
Q ss_pred HHhh----hcCHHHHHHHHHHHHHHHhhhCCc
Q 045023 334 DYLE----ISDQEFKGDLTAKICSMVEKFSPD 361 (812)
Q Consensus 334 ~yl~----~~d~~~~~~li~~I~~la~k~~~~ 361 (812)
.|+. ..-++++.+...-+..+++.|+|.
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 5554 346777777777777777777664
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=64.52 E-value=7.8 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHhccC
Q 045023 107 TNSLKQDLNHTNQYIVGLALCALGNIC 133 (812)
Q Consensus 107 ~Nsl~kDL~s~n~~i~~lAL~~Ls~I~ 133 (812)
.+.+.+=++|+++.||..|..+|+.|.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456677788888888888888888753
No 142
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=64.30 E-value=2.2e+02 Score=32.61 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHH----HHHHHHHHhhcCc-cchHHHHHHHHHHHHhCC-CcHH
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWY----IDQMLKVLSEAGN-FVKDEVWHALIVVISNAS-DLHG 400 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~----vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p-~l~~ 400 (812)
..+..|+.-+.+.|+.-|..+..-+..+-.||....... -+.+.+.+..... +...|+...+-.++.+.. .+++
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 345555666666666666666666666666665544433 3333444433332 345666666666666533 3332
Q ss_pred HHHHHHHHHH---hhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhc-cCCCHHHHHHHH
Q 045023 401 YTVRALYRAV---QTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKH-HSSDITTKAMAM 476 (812)
Q Consensus 401 ~~v~~L~~~l---~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~-~~~~~~vk~~iL 476 (812)
....-+...+ .....-.....-...|+..|.+.- + .-...+++.+++. +..++.-+...|
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd---p-------------~l~~~~i~~llk~WP~t~s~Kev~FL 276 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD---P-------------SLAEPVIKGLLKHWPKTNSQKEVLFL 276 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH----G-------------GGHHHHHHHHHHHS-SS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---c-------------hhHHHHHHHHHHhCCCCCchhHHHHH
Confidence 2222222222 221111222344456666665421 1 0111233444443 334455555666
Q ss_pred HHHHHHHccCCC-----ChHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 045023 477 VALLKLSSRFPS-----CSERIRDIIVQNKGSLVLELQQRSIEFNS 517 (812)
Q Consensus 477 tAl~KL~~r~p~-----~~~~i~~ll~~~~~s~~~evqqRA~ey~~ 517 (812)
.-+..+....+. ....+-+.+..|..|.+..|-+||..+|.
T Consensus 277 ~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 277 NELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 666666665542 23456678888999999999999998753
No 143
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=63.92 E-value=62 Score=31.87 Aligned_cols=110 Identities=12% Similarity=0.038 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhccch--HHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhc
Q 045023 387 ALIVVISNASDLHGYTVRALYRAVQTSIEQ--ESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKH 464 (812)
Q Consensus 387 ~i~~li~~~p~l~~~~v~~L~~~l~~~~~~--~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~ 464 (812)
.+..++..++..+.++++++.+.+-....+ ..+.....|++-.|.-.+.+.. +.+.+ +++.
T Consensus 41 IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~-------------~~l~~----~ld~ 103 (158)
T PF14676_consen 41 ILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECS-------------SKLKE----LLDY 103 (158)
T ss_dssp HHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S--------------HHHHG----GGGG
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHH-------------HHHHH----HHHH
Confidence 445566677778888888888777643332 3455556666666655443321 11222 2222
Q ss_pred -cCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHH
Q 045023 465 -HSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSI 513 (812)
Q Consensus 465 -~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ 513 (812)
.+-+..+-..++.|+.-|..--+..++.+.-+|...-.+.+.+.|+=|+
T Consensus 104 l~~lp~~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av 153 (158)
T PF14676_consen 104 LSFLPGDVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAV 153 (158)
T ss_dssp TTTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 1235777778888888888666888999999999999999999998765
No 144
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=62.62 E-value=2.8e+02 Score=31.61 Aligned_cols=222 Identities=16% Similarity=0.135 Sum_probs=118.1
Q ss_pred CCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC--HHHHHHhHhhhccccccc-CH
Q 045023 230 NAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD--AQAVQRHRATILECVKDL-DA 306 (812)
Q Consensus 230 n~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~--p~~v~~h~~~i~~cL~d~-D~ 306 (812)
..|.-+.|+.+-||..++-++..-+. +.+| -....|..|+... ...+.-....|..|+... |.
T Consensus 211 ~~~~QlQYqsifciWlLtFn~~~ae~----~~~~----------~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~ 276 (442)
T KOG2759|consen 211 KCGFQLQYQSIFCIWLLTFNPHAAEK----LKRF----------DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDR 276 (442)
T ss_pred CcchhHHHHHHHHHHHhhcCHHHHHH----Hhhc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 35778999999999998876654322 1111 1122333343322 122222334455666644 55
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHh---hhCCchhHHHHHHHHHHhhcCccchHH
Q 045023 307 SIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVE---KFSPDKIWYIDQMLKVLSEAGNFVKDE 383 (812)
Q Consensus 307 sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~---k~~~~~~w~vd~ll~lL~~~g~~v~~e 383 (812)
+.|+.+.-... ..++-..++-|.+ =..+|+++..++-.--..+.+ +++.-.+..=+.....|.-+.-|.++.
T Consensus 277 ~~~k~~~~~mv----~~~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 277 ETKKDIASQMV----LCKVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred hHHHHHHHHHH----hcCchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 66654322111 1123333322222 123677766655443333333 233322333334444555567788999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHh
Q 045023 384 VWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIK 463 (812)
Q Consensus 384 ~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~ 463 (812)
.|+.=.+-+.++ .-.+++.|...|+...++ .++++++.=||||....+.+..+.+ .-..-+.+.++++
T Consensus 352 FW~eNa~rlnen---nyellkiL~~lLe~s~Dp-~iL~VAc~DIge~Vr~yP~gk~vv~--------k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 352 FWRENADRLNEN---NYELLKILIKLLETSNDP-IILCVACHDIGEYVRHYPEGKAVVE--------KYGGKERVMNLLN 419 (442)
T ss_pred hHHHhHHHHhhc---cHHHHHHHHHHHhcCCCC-ceeehhhhhHHHHHHhCchHhHHHH--------HhchHHHHHHHhc
Confidence 998766544332 234567777777754434 4789999999999988765432110 0000012223343
Q ss_pred ccCCCHHHHHHHHHHHHHHHc
Q 045023 464 HHSSDITTKAMAMVALLKLSS 484 (812)
Q Consensus 464 ~~~~~~~vk~~iLtAl~KL~~ 484 (812)
.++++||--+|.|+=||-.
T Consensus 420 --h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 420 --HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred --CCCchHHHHHHHHHHHHHh
Confidence 3578999999999888754
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=62.53 E-value=1.2e+02 Score=33.23 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=90.2
Q ss_pred CCcchHHHHHHHHHHHHhhCHHH---HHHhHhhhccccc----ccCHhHHHHHHHHHHHhcCCC------------CHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQA---VQRHRATILECVK----DLDASIRKRALELVYLLVNES------------NVKP 327 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~---v~~h~~~i~~cL~----d~D~sIr~~aLell~~l~n~~------------Nv~~ 327 (812)
.+..++|-.|-.+-.+. ..+.. ++++.+.|...+. +.-.-|-|..+-++..+|+.. |+..
T Consensus 205 g~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k 283 (432)
T COG5231 205 GVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISK 283 (432)
T ss_pred hhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHH
Confidence 45778888887766443 33433 3555444443333 112234444555666667744 2222
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC--CchhHHHHHHH-HHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHH
Q 045023 328 LTKELIDYLEISDQEFKGDLTAKICSMVEKFS--PDKIWYIDQML-KVLSEAGNFVKDEVWHALIVVISNASDLHGYTVR 404 (812)
Q Consensus 328 Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~--~~~~w~vd~ll-~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~ 404 (812)
-|+-|.+ -..+|.|++.++-+--.++.+.+- ..+.-|+.-+- .+|.-+..|.+.+.|+.=++.+.++ .-.++.
T Consensus 284 ~vq~L~e-rkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd---ny~i~k 359 (432)
T COG5231 284 CVQVLLE-RKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD---NYEIVK 359 (432)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh---hHHHHH
Confidence 2222222 012577777766554445554332 12222333322 2344466789999999877766543 123567
Q ss_pred HHHHHHhhccchHHHHHHHHHhhhhccccccc
Q 045023 405 ALYRAVQTSIEQESLVRVAIWCIGEYGDMLVN 436 (812)
Q Consensus 405 ~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~ 436 (812)
+|.++++.+ .+..++++++-=||.|....+.
T Consensus 360 ~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 360 VLKKYLQSN-NPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred HHHHHHhcC-CCCceEeeeHhhHHHHHHhCch
Confidence 788888853 3335788888888888876543
No 146
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=61.59 E-value=2.4e+02 Score=38.44 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHhcC----CChh-----HHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccccc
Q 045023 233 NAILYECVETIMSIE----DNGG-----LRVLAINILGRFL-SNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVK 302 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~----~~~~-----L~~l~i~~L~~fL-~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~ 302 (812)
..|.+.|+..+-++. ...+ ..+...+.+...+ .+.+.++|-.+|+++..++....+-++.=..+||..+.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 457777776554321 1111 2222334444433 45678999999999999998776666555566665544
Q ss_pred ----ccCHhHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHHhhh
Q 045023 303 ----DLDASIRKRALELVYLLVNE----------SNVKPLTKELIDYLEIS-DQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 303 ----d~D~sIr~~aLell~~l~n~----------~Nv~~Iv~eLl~yl~~~-d~~~~~~li~~I~~la~k~ 358 (812)
+....|-+.|.+.+-.++++ +++...|+-|.+|.... +.++.-.++.-+..++.++
T Consensus 1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 66788888898888766543 56777777777777532 3445555555555554444
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=61.26 E-value=46 Score=41.06 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=95.2
Q ss_pred CCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC----------CCchhHHHHHHHHhcCCCCCcccccc
Q 045023 117 TNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP----------KCLDGLVKTLRDVVNSPYAPEYDIAG 186 (812)
Q Consensus 117 ~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA----------~~v~~lv~~L~~L~~~~~~pe~~~~~ 186 (812)
.++....+|.+.|..+..+++-........-++.|.++...+|- ++..+++.+|.+..... |.
T Consensus 809 ~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~--~~----- 881 (1030)
T KOG1967|consen 809 NHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA--PG----- 881 (1030)
T ss_pred CCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC--Cc-----
Confidence 45778889999999999988777666655556666665554443 34445555555544311 10
Q ss_pred CCChhHHHHHHHHHHhcCCCC--chhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhc-CCChhHHHHHHHHHHHh
Q 045023 187 ITDPFLHIRLLKLLHVLGQGD--ADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSI-EDNGGLRVLAINILGRF 263 (812)
Q Consensus 187 ~~dpwlqv~lL~lL~~l~~~~--~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i-~~~~~L~~l~i~~L~~f 263 (812)
..- ...+..|...-..- +.....+..++..++..... ....|-.++.++|-.. ...+.|...-+..+...
T Consensus 882 ~~K----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~---~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~ 954 (1030)
T KOG1967|consen 882 SQK----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM---PDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPY 954 (1030)
T ss_pred cch----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC---CccchhhhHhhhhhHHHHhccccchHHHhHHHHH
Confidence 000 11122222111111 22233444555544443211 1233435555554332 11222322223333332
Q ss_pred h----cCCCcc---hHHHHHHHHHHHHhhCH-HHHHHhHhh----hcccccccCHhHHHHHHHH
Q 045023 264 L----SNRDNN---IRYVALNMLMKAITVDA-QAVQRHRAT----ILECVKDLDASIRKRALEL 315 (812)
Q Consensus 264 L----~~~d~n---iryvaL~~L~~l~~~~p-~~v~~h~~~----i~~cL~d~D~sIr~~aLel 315 (812)
+ ++.|+| +|-.||++|..+...-| ..+..++.. +..||.|+-.-||+.|.+.
T Consensus 955 lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 955 LLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2 334444 78999999988887443 333333333 4568888888888888763
No 148
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=61.26 E-value=2.2e+02 Score=32.08 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=62.5
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHh--HhhhcccccccCHhHHHHHHHHH
Q 045023 240 VETIMSIEDN-GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRH--RATILECVKDLDASIRKRALELV 316 (812)
Q Consensus 240 v~~i~~i~~~-~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h--~~~i~~cL~d~D~sIr~~aLell 316 (812)
||.++.+... ..+....++.|.....+.+.+.|.++|.+|..++-.+|+.+.+. ...+++.+-|....+..-.+..+
T Consensus 92 iR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l 171 (371)
T PF14664_consen 92 IRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTL 171 (371)
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence 3444555322 22334456667777777888999999999999999999987542 24455666666666777788888
Q ss_pred HHhcCCCCHHHH
Q 045023 317 YLLVNESNVKPL 328 (812)
Q Consensus 317 ~~l~n~~Nv~~I 328 (812)
..+.|.-+.+..
T Consensus 172 L~lLd~p~tR~y 183 (371)
T PF14664_consen 172 LYLLDSPRTRKY 183 (371)
T ss_pred HHHhCCcchhhh
Confidence 888888777653
No 149
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.09 E-value=22 Score=34.05 Aligned_cols=78 Identities=21% Similarity=0.352 Sum_probs=52.9
Q ss_pred CchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---CchhhHHH-----HHHHHHHhccCCC-
Q 045023 83 PEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEMARD-----LAPEVERLLQFRD- 153 (812)
Q Consensus 83 ~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~~~~-----l~~~V~~ll~~~~- 153 (812)
+.---..+.++-..+.+++-.--+...|+|-|.|+||.++.+||..|-.+ |.+.+... +...+.+++.++.
T Consensus 20 ~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~ 99 (140)
T PF00790_consen 20 SPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT 99 (140)
T ss_dssp S--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 33334446666666667777888899999999999999999999877554 44444333 5666777666432
Q ss_pred -cc--eeccC
Q 045023 154 -PN--IRKKP 160 (812)
Q Consensus 154 -py--VRKkA 160 (812)
+. ||+|+
T Consensus 100 ~~~~~Vk~k~ 109 (140)
T PF00790_consen 100 DPETPVKEKI 109 (140)
T ss_dssp HHHSHHHHHH
T ss_pred CchhHHHHHH
Confidence 22 77775
No 150
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.64 E-value=2.1e+02 Score=31.27 Aligned_cols=210 Identities=16% Similarity=0.292 Sum_probs=95.7
Q ss_pred HHHHHHHhcc-CchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcC----CCCCccccccCCChhHHHHHH
Q 045023 123 GLALCALGNI-CSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNS----PYAPEYDIAGITDPFLHIRLL 197 (812)
Q Consensus 123 ~lAL~~Ls~I-~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~----~~~pe~~~~~~~dpwlqv~lL 197 (812)
.+-++.|.++ ...+..+.+...+-.++.+.... .+.+...... -+.|-+......|+|.+..-.
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~-----------~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSR-----------VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAA 126 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSS-----------HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHH-----------HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHH
Confidence 3344555556 66666666666666666553211 1111111110 111112234456899999999
Q ss_pred HHHHhcCCCCchhh-----hHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH-----HHHHHHHHhh---
Q 045023 198 KLLHVLGQGDADAS-----DCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV-----LAINILGRFL--- 264 (812)
Q Consensus 198 ~lL~~l~~~~~~~~-----~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~-----l~i~~L~~fL--- 264 (812)
++|..+....+... +.+..++.-+.+.. ++....+.+-|++++..+-..+..|. ..+..|...|
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l---~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQL---SSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT----HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhh---cCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhh
Confidence 99987754432211 22333333222211 11223344666666665544444433 2455666666
Q ss_pred ----cCCCcchHHHHHHHHHHHHhhCHHHHHHhH-----hhhccccc-ccCHhHHHHHHHHHHHhcCCCC---HHHHH-H
Q 045023 265 ----SNRDNNIRYVALNMLMKAITVDAQAVQRHR-----ATILECVK-DLDASIRKRALELVYLLVNESN---VKPLT-K 330 (812)
Q Consensus 265 ----~~~d~niryvaL~~L~~l~~~~p~~v~~h~-----~~i~~cL~-d~D~sIr~~aLell~~l~n~~N---v~~Iv-~ 330 (812)
.+.+..+.|-++-++-.+ ..+++++..-. ..+.++++ ..-.-|-|-++-++..+++... +..++ .
T Consensus 204 ~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~ 282 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQALLCLWLL-SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC 282 (312)
T ss_dssp -------HHHHHHHHHHHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred cccCCCCchhHHHHHHHHHHHH-hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc
Confidence 224567889888887644 44444433211 11222333 2334667777888888876665 33322 2
Q ss_pred HHHHHhh------hcCHHHHHHH
Q 045023 331 ELIDYLE------ISDQEFKGDL 347 (812)
Q Consensus 331 eLl~yl~------~~d~~~~~~l 347 (812)
.++..+. ..|+|+..++
T Consensus 283 ~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 283 GLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp -HHHHHHHHHSS--SSHHHHHHH
T ss_pred cHHHHHHHHhcCCCCCHHHHHHH
Confidence 2333332 2566666654
No 151
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=60.23 E-value=17 Score=39.11 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=28.7
Q ss_pred CCCcccccccCCCCCCCCCCCC--cchhhhhhCCCCCCCCCCCCCCCCCCCChhhhhhhhCCCCC
Q 045023 572 AAPLVDLLDLSSDDAPVPSSSG--NDFLQDLLGVDVSPASVQPGTSQAPKAGTDVLLDLLSIGSP 634 (812)
Q Consensus 572 ~~~~~dlldl~~~~~~~~~~~~--~d~l~dl~g~~~~~~~~~~~~~~~~~~~~~~l~dl~~~~~~ 634 (812)
+....||.||-+..+|.+.... .-...|+||...+..-+.+++. ..++.-|.+|+|..+..
T Consensus 323 nkssgdl~dLFDgsa~s~~gaadlfG~faDf~~aaaagsfn~a~at--A~Sg~GdfgD~~AF~aA 385 (499)
T KOG2057|consen 323 NKSSGDLDDLFDGSAPSPAGAADLFGAFADFFGAAAAGSFNAAPAT--APSGGGDFGDLFAFGAA 385 (499)
T ss_pred ccccccHHHHhcCcCCCCCCchhhcCchhhhhhhhccCcccccccc--ccCCCCcchhhhhhcCC
Confidence 3344566666655555444332 1124466665433222222222 12344567888776543
No 152
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=59.89 E-value=1.7e+02 Score=32.38 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=71.9
Q ss_pred HHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhh------CCc
Q 045023 288 QAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKF------SPD 361 (812)
Q Consensus 288 ~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~------~~~ 361 (812)
.++++|...|..+|......+..-+|.|+.+|+.=+ =....+|++.+..-.-..+.+-+..+-......- +.-
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~-~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si 130 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFD-GGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI 130 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence 346778888999999999999999999999997622 2345566666653222222222111111111100 133
Q ss_pred hhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhc
Q 045023 362 KIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEY 430 (812)
Q Consensus 362 ~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY 430 (812)
...+|+.++.++..+...+..+++ .+. ..+..+++.+.+ ++..++..++=++.+|
T Consensus 131 R~~fI~F~Lsfl~~~~~~~~~~lL-------~~~-----~~~~~l~k~l~~--D~~~~v~~iL~~l~~~ 185 (330)
T PF11707_consen 131 RTNFIRFWLSFLSSGDPELKRDLL-------SQK-----KLMSALFKGLRK--DPPETVILILETLKDK 185 (330)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH-------HcC-----chHHHHHhcccC--CCHHHHHHHHHHHHHH
Confidence 347889999988887554444433 221 114455666654 3334455555555555
No 153
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.80 E-value=68 Score=34.60 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH-H---------HHHhHhhhccccc--------ccCHhHHHHHHHHH
Q 045023 255 LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQ-A---------VQRHRATILECVK--------DLDASIRKRALELV 316 (812)
Q Consensus 255 l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~-~---------v~~h~~~i~~cL~--------d~D~sIr~~aLell 316 (812)
+.+..+..++.+.++.+|.-|+..|..++..-+. . .+-....+..||. ++...+=..+...+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 4556666777777888888888888888764322 1 2223455666776 55556666677777
Q ss_pred HHh
Q 045023 317 YLL 319 (812)
Q Consensus 317 ~~l 319 (812)
+.+
T Consensus 199 ~~L 201 (282)
T PF10521_consen 199 LSL 201 (282)
T ss_pred HHH
Confidence 776
No 154
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=3.7e+02 Score=33.84 Aligned_cols=153 Identities=13% Similarity=0.167 Sum_probs=97.2
Q ss_pred HHHHHHHHHhhcC----CCcchHHHHHHHHHHHHhh----CH------HHHHHhHhhhcccccccCHhHHHHHHHHHHHh
Q 045023 254 VLAINILGRFLSN----RDNNIRYVALNMLMKAITV----DA------QAVQRHRATILECVKDLDASIRKRALELVYLL 319 (812)
Q Consensus 254 ~l~i~~L~~fL~~----~d~niryvaL~~L~~l~~~----~p------~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l 319 (812)
.-++.+|+++-.+ +++--++=||.++..+... .| .++..| ++-.+.++--+.|.||..++...
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h---VfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH---VFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH---hhHhhcCchhHHHHHHHHHHHHH
Confidence 3345566655333 3444677888887777632 23 334555 44456777789999999999998
Q ss_pred c-----CCCCHHHHHHHHHHHhh-hcCHHHHHHHHHHHHHHHhhhC---CchhH-HHHHHHHHHhhcCccchHHHHHHHH
Q 045023 320 V-----NESNVKPLTKELIDYLE-ISDQEFKGDLTAKICSMVEKFS---PDKIW-YIDQMLKVLSEAGNFVKDEVWHALI 389 (812)
Q Consensus 320 ~-----n~~Nv~~Iv~eLl~yl~-~~d~~~~~~li~~I~~la~k~~---~~~~w-~vd~ll~lL~~~g~~v~~e~i~~i~ 389 (812)
+ +.+|..++++--.+.+. +.+--+|.+++.++-.+...-. +..+- .-.++-++|+....+=.+.....+-
T Consensus 490 ~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme 569 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVME 569 (1010)
T ss_pred HhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 8 67788888877777776 5556688888888777664322 21222 3334555666666655566666666
Q ss_pred HHHHhCCC-cHHHHHHHHHHHH
Q 045023 390 VVISNASD-LHGYTVRALYRAV 410 (812)
Q Consensus 390 ~li~~~p~-l~~~~v~~L~~~l 410 (812)
.++..+++ +..+|+ .|+..|
T Consensus 570 ~iV~~fseElsPfA~-eL~q~L 590 (1010)
T KOG1991|consen 570 KIVCKFSEELSPFAV-ELCQNL 590 (1010)
T ss_pred HHHHHHHHhhchhHH-HHHHHH
Confidence 78877764 555554 344433
No 155
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.91 E-value=28 Score=31.89 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhH---hhhcccc---------
Q 045023 234 AILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHR---ATILECV--------- 301 (812)
Q Consensus 234 aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~---~~i~~cL--------- 301 (812)
..+.|.+..+..- +.-..-++..|.+-|.++++++.|-||..|-.++.....-|..+. ....+++
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4455555555322 111234667777778888999999999999999976544333322 1222221
Q ss_pred cccCHhHHHHHHHHHHHhc
Q 045023 302 KDLDASIRKRALELVYLLV 320 (812)
Q Consensus 302 ~d~D~sIr~~aLell~~l~ 320 (812)
++.+..||.++++++....
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2557899999999887654
No 156
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=58.73 E-value=31 Score=39.39 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCCCchhHHHHHHHHhcccchhH----HHHHHHHHHhhcCCCCHhHHHHHHHHHhcc--CchhhHHHHHHHHHHhccCCC
Q 045023 80 AGFPEKRIGYLGLMLLLDERQEV----LMLVTNSLKQDLNHTNQYIVGLALCALGNI--CSAEMARDLAPEVERLLQFRD 153 (812)
Q Consensus 80 ~~~~~KRlgYL~~~~ll~~~~el----~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I--~~~e~~~~l~~~V~~ll~~~~ 153 (812)
.+--.||..|=|+..++...++. +++. -|.++|+.-|++||..++.| ++....
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l------~lkd~~~~~ra~alqv~~~~l~gsk~fl--------------- 82 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELGSPSLMTL------TLKDPSPKTRACALQVLSAILEGSKQFL--------------- 82 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCCCceeeEE------ecCCCChhHHHHHHHHHHHHHHhhHHHH---------------
Confidence 45567999999999988766554 2222 47899999999999988765 222111
Q ss_pred cceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcc
Q 045023 154 PNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGN 233 (812)
Q Consensus 154 pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~ 233 (812)
..-+++-.+. ..||...---.++..| ..+ ++..+.. ..+
T Consensus 83 --------------s~a~~~~~~~----------ftpf~v~~a~si~~~~--------r~l--~~~l~~e-------~~~ 121 (728)
T KOG4535|consen 83 --------------SVAEDTSDHA----------FTPFSVMIACSIRELH--------RCL--LLALVAE-------SSS 121 (728)
T ss_pred --------------HHHhccCCcC----------CCchHHHHHHHHHHHH--------HHH--HHHHHHh-------cCc
Confidence 0001100011 1444322111111111 011 1111222 234
Q ss_pred hHHHHHHHHHHhcCCC-------hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 045023 234 AILYECVETIMSIEDN-------GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD 286 (812)
Q Consensus 234 aVl~e~v~~i~~i~~~-------~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~ 286 (812)
-++-+|++++-.+-.. -++....++.+.+++.++|+|+|..+|..|-.++..+
T Consensus 122 ~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 122 QTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 5777888887665321 2234456788888999999999999999999888654
No 157
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=58.19 E-value=3.5e+02 Score=31.29 Aligned_cols=192 Identities=12% Similarity=0.204 Sum_probs=104.1
Q ss_pred CchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhh----hHHHHHHHHHhhccccCCCC-cchHH
Q 045023 162 CLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADAS----DCMNDILAQVATKTESNKNA-GNAIL 236 (812)
Q Consensus 162 ~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~----~~l~diL~~v~~~~~~~kn~-~~aVl 236 (812)
++..++..|-.++...-+ ..++|+.--++|++..+...-.... +.+..++..++.|- .|. -+=-+
T Consensus 23 ~~~~ll~~Lf~~i~~~~s-------~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP---snP~FnHyl 92 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGS-------AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP---SNPRFNHYL 92 (435)
T ss_dssp CHHHHHHHHHHHHHTT-S-------TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS------HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcchhhhH
Confidence 445555555555544333 3477888899999988765432222 34445555555432 111 12268
Q ss_pred HHHHHHHHhcCC--Chh----HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH-HHHHHhHhhhcccccccCHhHH
Q 045023 237 YECVETIMSIED--NGG----LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA-QAVQRHRATILECVKDLDASIR 309 (812)
Q Consensus 237 ~e~v~~i~~i~~--~~~----L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p-~~v~~h~~~i~~cL~d~D~sIr 309 (812)
||++-+++.... +++ +-......+...|...=.+.-=.+++.|..++..++ ..+......++.+|-.+..
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l--- 169 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL--- 169 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG---
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch---
Confidence 999999988643 333 333445555666665545666667888888888776 3343333445555544321
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHhhh---CCchhHHHHHHHHHHhh
Q 045023 310 KRALELVYLLVNESNVKPLTKELIDYLEISDQEFK-GDLTAKICSMVEKF---SPDKIWYIDQMLKVLSE 375 (812)
Q Consensus 310 ~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~-~~li~~I~~la~k~---~~~~~w~vd~ll~lL~~ 375 (812)
=-...|+-.+++=|..|+++....+. ..-+..|..+.+|. ..+..+-++.+-.++..
T Consensus 170 ---------We~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 170 ---------WERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVEN 230 (435)
T ss_dssp ---------GGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred ---------hccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 13578999999999999998766552 12223333333332 22444555554444443
No 158
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=58.04 E-value=1.4e+02 Score=37.08 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=78.1
Q ss_pred CCCcchHHHHHHHHHHHHhhCHHHHHHhHhh----hcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCH
Q 045023 266 NRDNNIRYVALNMLMKAITVDAQAVQRHRAT----ILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQ 341 (812)
Q Consensus 266 ~~d~niryvaL~~L~~l~~~~p~~v~~h~~~----i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~ 341 (812)
+.+.|+--.++.+|..|...-+..+..|... |+.|++|.-..+|--++..+-+++|......+.+.++.++...++
T Consensus 306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp 385 (815)
T KOG1820|consen 306 DANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNP 385 (815)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCh
Confidence 3445556667888888887766667776644 667788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 045023 342 EFKGDLTAKICSMVEKFS 359 (812)
Q Consensus 342 ~~~~~li~~I~~la~k~~ 359 (812)
.++.++..-...+..++.
T Consensus 386 ~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 386 QIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hhHHHHHHHHHHHHhhcC
Confidence 999999888888887776
No 159
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.77 E-value=3.4e+02 Score=32.94 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=42.3
Q ss_pred HHHHhhc-CCCcchHHHHHHHHHHHHhhC-H-HHHHHhHhhhcccccccCHhHHHHHHHHHHHhc
Q 045023 259 ILGRFLS-NRDNNIRYVALNMLMKAITVD-A-QAVQRHRATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 259 ~L~~fL~-~~d~niryvaL~~L~~l~~~~-p-~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
.|...++ .....+.-+.++.+-.|.+.- + +..+.-...++.|++|.|+.|..++|.++-...
T Consensus 353 ~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~ 417 (700)
T KOG2137|consen 353 ALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVA 417 (700)
T ss_pred HHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHH
Confidence 3333333 445667777888887777653 3 444445566788999999999999998876543
No 160
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=55.85 E-value=2.8e+02 Score=29.59 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=87.8
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHh----Hhhhccccc-ccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh----
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRH----RATILECVK-DLDASIRKRALELVYLLVNESNVKPLTKELIDYLE---- 337 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h----~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~---- 337 (812)
--...||.+++.|..++..+...++.. ...++.+.. +.|+--=..+.+++..++.+=.+...+++|.+-+.
T Consensus 94 ~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFP 173 (262)
T PF14500_consen 94 LPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFP 173 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheee
Confidence 346689999999988888876666533 233333333 77886666667777666666555666666666432
Q ss_pred h------cCH--HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q 045023 338 I------SDQ--EFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASD--LHGYTVRALY 407 (812)
Q Consensus 338 ~------~d~--~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~--l~~~~v~~L~ 407 (812)
- .|+ =-+.++..++..+-.--+.-..|++..+++-|......+..++...+..-+.+++. +..|. ..++
T Consensus 174 I~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~-~~iw 252 (262)
T PF14500_consen 174 ITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHW-STIW 252 (262)
T ss_pred eeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHH
Confidence 1 122 13344555554443222223467888888888887777888888888777777653 23332 3455
Q ss_pred HHHh
Q 045023 408 RAVQ 411 (812)
Q Consensus 408 ~~l~ 411 (812)
..++
T Consensus 253 ~~lk 256 (262)
T PF14500_consen 253 NALK 256 (262)
T ss_pred HHHH
Confidence 5554
No 161
>PHA02939 hypothetical protein; Provisional
Probab=55.55 E-value=96 Score=28.57 Aligned_cols=99 Identities=20% Similarity=0.377 Sum_probs=54.0
Q ss_pred cCCCCHHHHHHHHHHHhhhcCHHHHHH----HHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh-
Q 045023 320 VNESNVKPLTKELIDYLEISDQEFKGD----LTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN- 394 (812)
Q Consensus 320 ~n~~Nv~~Iv~eLl~yl~~~d~~~~~~----li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~- 394 (812)
+|+..++.|.+.|- |+. .+|+.- +....+.+++-=-+..+|-.|.+- +++.+++|.+=..+..-
T Consensus 13 vNEqdIQLItKKLA-YIA---IQFqKi~er~if~d~~~~~de~c~~~kwE~df~r-------D~ipe~iW~vRkaV~~l~ 81 (144)
T PHA02939 13 VNEQDIQLITKKLA-YIA---IQFQKILERMIFSDFARCDDEGCPRSKWESDFLR-------DLIPEEIWYVRKAVKELY 81 (144)
T ss_pred cCHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHhhccccccchHhhHHHHHH-------HHhhHHHHHHHHHHHHHh
Confidence 45566666666654 332 233322 223333444444477789888754 46788888543333321
Q ss_pred CC----CcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcc
Q 045023 395 AS----DLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYG 431 (812)
Q Consensus 395 ~p----~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~ 431 (812)
.| +.++|+=.+|-..|.. -...+.+..-||+.|--
T Consensus 82 DP~st~~qrEyae~~l~~lle~--~~r~f~~Ll~~ci~ekR 120 (144)
T PHA02939 82 DPESTDDQREYAEHRLKGLLEL--LERNFNQLLEFCIDEKR 120 (144)
T ss_pred CCccchhHHHHHHhhHHHHHHH--HHHHHHHHHHHHhhHHH
Confidence 33 3567776666555542 22345666779987653
No 162
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.20 E-value=3.5e+02 Score=30.09 Aligned_cols=199 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH-hcCCCCch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCC
Q 045023 191 FLHIRLLKLLH-VLGQGDAD-ASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRD 268 (812)
Q Consensus 191 wlqv~lL~lL~-~l~~~~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d 268 (812)
|.-.+++.++. .+.+.... ...++.+.+..+.+.-|-. +-.+-.|+-.|+|.+.. .+..+ +..+.-++ |
T Consensus 185 ~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR--V~fg~ah~hAr~ia~e~---~l~~L-~Eal~A~~---d 255 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR--VVFGQAHGHARTIAKEG---ILTAL-TEALQAGI---D 255 (461)
T ss_pred HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee--eecchhhHHHHHHHHhh---hHHHH-HHHHHccC---C
Q ss_pred cchHHHHHHHHHHHHhhC---HHHHH-HhHhhhcccccc-cCHhHH---HHHHHHHHHhcCCCCHHHHHHHHHHHhhhcC
Q 045023 269 NNIRYVALNMLMKAITVD---AQAVQ-RHRATILECVKD-LDASIR---KRALELVYLLVNESNVKPLTKELIDYLEISD 340 (812)
Q Consensus 269 ~niryvaL~~L~~l~~~~---p~~v~-~h~~~i~~cL~d-~D~sIr---~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d 340 (812)
|++---..-+|..+.-++ ..+.. .-.++++.|+.| .+.-.| +.+|.+|-+|+-.+.++.-+
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I----------- 324 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI----------- 324 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH-----------
Q ss_pred HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHhhccc
Q 045023 341 QEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASD-----LHGYTVRALYRAVQTSIE 415 (812)
Q Consensus 341 ~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~-----l~~~~v~~L~~~l~~~~~ 415 (812)
++.--..+|..++.+|..+ ..|-+++.-.+.-+.-+.|+ +-.-+....+.+++....
T Consensus 325 --V~~gg~~~ii~l~~~h~~~----------------p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 325 --VEKGGLDKIITLALRHSDD----------------PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred --HHhcChHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Q ss_pred hHHHHHHHHHhh
Q 045023 416 QESLVRVAIWCI 427 (812)
Q Consensus 416 ~~~l~~~~~Wii 427 (812)
...+.+-++|+|
T Consensus 387 ~a~vQrnac~~I 398 (461)
T KOG4199|consen 387 AAQVQRNACNMI 398 (461)
T ss_pred HHHHHHHHHHHH
No 163
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=53.66 E-value=1.4e+02 Score=36.00 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=103.3
Q ss_pred CHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC----ccc
Q 045023 305 DASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG----NFV 380 (812)
Q Consensus 305 D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g----~~v 380 (812)
...+|.--+|.|....+..-+..|.+.+.. ......-...++..+...+. .|+ .-+++.++.+++... .++
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~~l~~~~~--~Pt-~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLASLPFHVR--RPT-EELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHHT--------HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhhcC--CCC-HHHHHHHHHHHhCccccCChhH
Confidence 567888889999987777767666655544 22233333344433333221 233 348888888876532 356
Q ss_pred hHHHHHHHHHHHHh---C-----------CCcHHHHHHHHHHHHhhc--cchHHHHHHHHHhhhhcccccccCccccccC
Q 045023 381 KDEVWHALIVVISN---A-----------SDLHGYTVRALYRAVQTS--IEQESLVRVAIWCIGEYGDMLVNNVGVLNIE 444 (812)
Q Consensus 381 ~~e~i~~i~~li~~---~-----------p~l~~~~v~~L~~~l~~~--~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~ 444 (812)
...++-.+-.++.+ . .......+..+...+... .....-+.+++=.||.-|.-
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------- 520 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------- 520 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------
Confidence 66666666666643 2 122223333444444321 11223356667777877642
Q ss_pred CCCccChhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHccCCCChHHHHH-HHHHhhC-CCChHHHHHHHHHHHHhcc
Q 045023 445 DPITVTESDAVDVVEIAIKHH-SSDITTKAMAMVALLKLSSRFPSCSERIRD-IIVQNKG-SLVLELQQRSIEFNSIVEK 521 (812)
Q Consensus 445 ~~~~v~~~~vi~~l~~~l~~~-~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~-ll~~~~~-s~~~evqqRA~ey~~Ll~~ 521 (812)
.+++.+..++... ..+..+|..++.|+-++....| +.+++ ++..|.+ ..+.|||-=| |..|+..
T Consensus 521 --------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~e~~EvRiaA--~~~lm~~ 587 (618)
T PF01347_consen 521 --------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTTEDPEVRIAA--YLILMRC 587 (618)
T ss_dssp --------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TTS-HHHHHHH--HHHHHHT
T ss_pred --------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCCCChhHHHHH--HHHHHhc
Confidence 2345555555544 3467899999999998866665 33443 3344554 6678877766 5667754
Q ss_pred CH--HHHHHhhhcC
Q 045023 522 HQ--NIRSTLVERM 533 (812)
Q Consensus 522 ~~--~~~~~ll~~m 533 (812)
.+ .+...|...+
T Consensus 588 ~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 588 NPSPSVLQRIAQSL 601 (618)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 22 3444444433
No 164
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.27 E-value=4.7e+02 Score=31.09 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=27.8
Q ss_pred HHhhccCCCCchhHHHHHHHH--hc-ccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc
Q 045023 74 LKSIASAGFPEKRIGYLGLML--LL-DERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI 132 (812)
Q Consensus 74 ikli~s~~~~~KRlgYL~~~~--ll-~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I 132 (812)
.+.+.+.+.+..-...++... +. ..+++++-.+-..++.+-..++++++..|+-++|++
T Consensus 363 ~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~l 424 (574)
T smart00638 363 KQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSL 424 (574)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 345566555543332222222 22 344555444444444444444566666666666554
No 165
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=51.88 E-value=49 Score=31.90 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD 286 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~ 286 (812)
.-+...|.+-.|-. ++.--+-|+..|.+-|.++++|+.+.||..|-.++..-
T Consensus 21 dw~~ileicD~In~---~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC 72 (142)
T cd03569 21 DLASILEICDMIRS---KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC 72 (142)
T ss_pred CHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC
Confidence 34455555555432 11123457788888888999999999999988887653
No 166
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=51.62 E-value=55 Score=40.58 Aligned_cols=90 Identities=13% Similarity=0.199 Sum_probs=61.9
Q ss_pred HHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHH----HHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 281 KAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKP----LTKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 281 ~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~----Iv~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
.++..+...+.+|...|-.||.|+++.|||.++-+|..|....=++- .++-++ -+-++.+++|...=.-|+.+-.
T Consensus 995 D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 995 DICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFML-ALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHh
Confidence 34445566788999999999999999999999999999988775542 222222 2234677888887777777766
Q ss_pred hhCCch--hHHHHHHHH
Q 045023 357 KFSPDK--IWYIDQMLK 371 (812)
Q Consensus 357 k~~~~~--~w~vd~ll~ 371 (812)
+-.|.. .-+|+.++.
T Consensus 1074 ~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1074 SEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred hcCccchHHHHHHHHHH
Confidence 655432 234444443
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=51.20 E-value=2.7e+02 Score=31.83 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCC-h---hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhH-hhhcccccc-cC
Q 045023 235 ILYECVETIMSIEDN-G---GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHR-ATILECVKD-LD 305 (812)
Q Consensus 235 Vl~e~v~~i~~i~~~-~---~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~-~~i~~cL~d-~D 305 (812)
++|+....++.-... + .+-...+..|..++.+.|++=|-.....|.++....+ ..+.+.. ..+++.+++ .+
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 455555555443221 1 2333456666677788888888888888887765432 2222222 222233332 22
Q ss_pred HhHHHHHHHHHHHhcCCCC--HHHHHHHHHH-Hh---hh--cCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 045023 306 ASIRKRALELVYLLVNESN--VKPLTKELID-YL---EI--SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVL 373 (812)
Q Consensus 306 ~sIr~~aLell~~l~n~~N--v~~Iv~eLl~-yl---~~--~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL 373 (812)
..-=-..|+++..++|.-+ .++--..++. .+ .. .-..|-..+...+...+++.+.-..|+++.+++.=
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W 264 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW 264 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC
Confidence 3333456777777777522 3332222222 11 11 23457777888888888777777777777776543
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=50.72 E-value=30 Score=32.37 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=56.4
Q ss_pred cCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHH
Q 045023 376 AGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAV 455 (812)
Q Consensus 376 ~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi 455 (812)
+.-|-++..|..=.. +..+-.-.++.+|+..|.... ....+++++.=||||.....++..+.+ .-.+-
T Consensus 21 SP~H~se~FW~ENa~---kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~--------~lg~K 88 (119)
T PF11698_consen 21 SPVHKSEKFWRENAD---KFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIE--------KLGAK 88 (119)
T ss_dssp -GGGG-HHHHHHHSG---GGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHH--------HHSHH
T ss_pred cCCCCCccHHHHHHH---HHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHH--------hcChH
Confidence 445667777743222 222323357788888886433 445688999999999988765432211 11122
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 045023 456 DVVEIAIKHHSSDITTKAMAMVALLKLSS 484 (812)
Q Consensus 456 ~~l~~~l~~~~~~~~vk~~iLtAl~KL~~ 484 (812)
+.+..++.. .+++||-.+|.|+-|+-.
T Consensus 89 ~~vM~Lm~h--~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 89 ERVMELMNH--EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHTS---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHH
Confidence 333444443 579999999999998864
No 169
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=50.29 E-value=41 Score=37.93 Aligned_cols=151 Identities=16% Similarity=0.217 Sum_probs=85.3
Q ss_pred CcchHHHHHHHH---hccCChHHHHHHHHHH-HHHHHHHHccCChHHHHHHHHHHHHHHHcCC--CCCChhHHHHH-hhc
Q 045023 6 SGTRLRDMIRSI---RACKTAAEERAVVRKE-CAAIRAAINENDQDYRHRNLAKLMFIHMLGY--PTHFGQMECLK-SIA 78 (812)
Q Consensus 6 ~~~~L~~fI~~v---r~~~t~~eEr~~i~~E-~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~--~~~~~~~evik-li~ 78 (812)
..-.|..+|.+| .-|=+.++| +....+ ..=||+.+...|...|+++-.-++.-....+ .+...++..|+ +++
T Consensus 181 ~~~~L~~Iie~VI~Pnl~~~e~D~-ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~ 259 (370)
T PF08506_consen 181 NKPHLQQIIEKVIFPNLCLREEDE-ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQ 259 (370)
T ss_dssp SHHHHHHHHHHTHHHHHS--HHHH-HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCccCCCHHHH-HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334577777775 224333333 333333 4568888876677777777666665443332 23333344444 233
Q ss_pred ------cCCCCchhHHHHHHHHhcccch--------------hHHHHHHHHHHhhcC---CCCHhHHHHHHHHHhccC--
Q 045023 79 ------SAGFPEKRIGYLGLMLLLDERQ--------------EVLMLVTNSLKQDLN---HTNQYIVGLALCALGNIC-- 133 (812)
Q Consensus 79 ------s~~~~~KRlgYL~~~~ll~~~~--------------el~~L~~Nsl~kDL~---s~n~~i~~lAL~~Ls~I~-- 133 (812)
+.+.. ++=|.+++..-+.... ++.-...+.+.-||+ +..|++++-|++++...+
T Consensus 260 ~y~~~~~~~w~-~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~ 338 (370)
T PF08506_consen 260 QYASNPSNNWR-SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ 338 (370)
T ss_dssp HHHH-TTT-HH-HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG
T ss_pred HHhhCCcccHH-HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh
Confidence 23333 4445554433221111 455566777777887 678999999999997654
Q ss_pred -chhhHHHHHHHHHHhccCCCcceec
Q 045023 134 -SAEMARDLAPEVERLLQFRDPNIRK 158 (812)
Q Consensus 134 -~~e~~~~l~~~V~~ll~~~~pyVRK 158 (812)
+++....++|.+.++|.+++.-|+-
T Consensus 339 l~~~~l~~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 339 LPKEQLLQIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp S-HHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCcchhh
Confidence 5788888999999999998766653
No 170
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=50.24 E-value=37 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=14.4
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
++-+++.+.+.+++.|..++..++.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555553
No 171
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.36 E-value=80 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR 292 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~ 292 (812)
+-++..|.+-|.++++++++.||..|-.++.....-|..
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 457788888888999999999999998888776555443
No 172
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=48.66 E-value=1.4e+02 Score=32.29 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=66.4
Q ss_pred HhhhcccccccCHhHHHHHHHHHHHhcCCCCHHH-----------HH----HHHHHHhhh-----cCHHHHHHHHHHHHH
Q 045023 294 RATILECVKDLDASIRKRALELVYLLVNESNVKP-----------LT----KELIDYLEI-----SDQEFKGDLTAKICS 353 (812)
Q Consensus 294 ~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~-----------Iv----~eLl~yl~~-----~d~~~~~~li~~I~~ 353 (812)
...|+..++|.++.+|.+.+.+|..+.+.-.... ++ .-++.|+.. ....+-..+..++..
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 3456778899999999999999999987554333 22 223334432 123344555555555
Q ss_pred HHhh-h----CCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhc-cchHHHHHHHHHhh
Q 045023 354 MVEK-F----SPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTS-IEQESLVRVAIWCI 427 (812)
Q Consensus 354 la~k-~----~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~-~~~~~l~~~~~Wii 427 (812)
++.. | .+...|+.+++.+.+-.+-.+... ..++.++...++.+...+..- +..-.-++.++.++
T Consensus 201 L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~----------~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 201 LLKTQENDDSNPRSTWLDKILREGILSSMEHESS----------FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHhhccCCcccchHHHHHHHHHHHhhhceeccc----------cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5432 1 233344555554422222122111 124555555555555444421 12223455667777
Q ss_pred hhcc
Q 045023 428 GEYG 431 (812)
Q Consensus 428 GEY~ 431 (812)
|||-
T Consensus 271 ~~~l 274 (282)
T PF10521_consen 271 SQIL 274 (282)
T ss_pred HHHh
Confidence 7753
No 173
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.39 E-value=40 Score=32.47 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=44.3
Q ss_pred HHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cchhh-----HHHHHHHHHHhcc-CCCcceeccC
Q 045023 92 LMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEM-----ARDLAPEVERLLQ-FRDPNIRKKP 160 (812)
Q Consensus 92 ~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~-----~~~l~~~V~~ll~-~~~pyVRKkA 160 (812)
++-+.+.+++-.--++-.|+|-|+|+|+.++-+||..|-.+ |...+ -+.+...+.+++. ..++-||+|+
T Consensus 28 icD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~ki 105 (142)
T cd03569 28 ICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKI 105 (142)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHH
Confidence 33333333444556788999999999999999999776443 22212 1234555666665 4566788776
No 174
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=48.12 E-value=50 Score=31.32 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=35.1
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI 132 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I 132 (812)
-+-+.++-..+.+++-.--++..|+|=|+|+|+.++-+||..|-.+
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~ 64 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELL 64 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3445555555666666778889999999999999999999877543
No 175
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=47.66 E-value=5e+02 Score=29.97 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHhhCHHHHH---Hh-------HhhhcccccccCHhHHHHHHHHHHHhcCCC
Q 045023 269 NNIRYVALNMLMKAITVDAQAVQ---RH-------RATILECVKDLDASIRKRALELVYLLVNES 323 (812)
Q Consensus 269 ~niryvaL~~L~~l~~~~p~~v~---~h-------~~~i~~cL~d~D~sIr~~aLell~~l~n~~ 323 (812)
..+.-.+|..+..+++.+|..++ .+ ...++.+|..+|..|...+..++..++...
T Consensus 68 ~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 68 DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 34444456666677766664332 22 123456777788899999999988876443
No 176
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=47.29 E-value=7.3e+02 Score=31.79 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=109.0
Q ss_pred chhhHHHHHHHHHHhccCCCcceeccC-CCchhHH---------HHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhc
Q 045023 134 SAEMARDLAPEVERLLQFRDPNIRKKP-KCLDGLV---------KTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVL 203 (812)
Q Consensus 134 ~~e~~~~l~~~V~~ll~~~~pyVRKkA-~~v~~lv---------~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l 203 (812)
.+|+++.++.++...++|.+..||..| |-+..+. +.+...+. -+.|- .....|. --+=.|..+
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~----e~~~aWH--gacLaLAEL 407 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPA----EDDSAWH--GACLALAEL 407 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcC----CchhHHH--HHHHHHHHH
Confidence 368899999999999999999999998 2211111 22222222 11121 1123454 112223333
Q ss_pred CCCCchhhhHHHHHHHHHhh---ccc--cCCCCcchHHHHHHHHHHhcC----C---ChhHHHHHHHHHHHhhcCCCcch
Q 045023 204 GQGDADASDCMNDILAQVAT---KTE--SNKNAGNAILYECVETIMSIE----D---NGGLRVLAINILGRFLSNRDNNI 271 (812)
Q Consensus 204 ~~~~~~~~~~l~diL~~v~~---~~~--~~kn~~~aVl~e~v~~i~~i~----~---~~~L~~l~i~~L~~fL~~~d~ni 271 (812)
+...--....+.++++-+.. ..+ .....|+.|-=.|...+..+. + ++-+-.++...|+.-+=+++-|.
T Consensus 408 A~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 408 ALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred HhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 32211112234445444332 111 123456666655555555542 1 22233345555555555789999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH-HHHHHHHhcC-CCCHHHHHHHHHHH-hhhcCHHHHHHHH
Q 045023 272 RYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR-ALELVYLLVN-ESNVKPLTKELIDY-LEISDQEFKGDLT 348 (812)
Q Consensus 272 ryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~-aLell~~l~n-~~Nv~~Iv~eLl~y-l~~~d~~~~~~li 348 (812)
|+.|--.+...+.+.++. +|=-.++.-.+.--...|.. =+++...++. +.=.+.++++|+.. +.+=|...|....
T Consensus 488 RRAAsAAlqE~VGR~~n~--p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNF--PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred hHHHHHHHHHHhccCCCC--CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHH
Confidence 999999998888764432 00001111111101111111 2333333332 22244455555554 4455788888888
Q ss_pred HHHHHHHhhhCC
Q 045023 349 AKICSMVEKFSP 360 (812)
Q Consensus 349 ~~I~~la~k~~~ 360 (812)
.++..+...++.
T Consensus 566 ~aL~~Ls~~~pk 577 (1133)
T KOG1943|consen 566 YALHKLSLTEPK 577 (1133)
T ss_pred HHHHHHHHhhHH
Confidence 888888776654
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=6.6e+02 Score=31.09 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh------ccchHHHHHHHHHhhhhccccc
Q 045023 361 DKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQT------SIEQESLVRVAIWCIGEYGDML 434 (812)
Q Consensus 361 ~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~------~~~~~~l~~~~~WiiGEY~~~l 434 (812)
-..||-.+++-.+-......+++....-+.....+|+.. .+...|..+.. ...-.-+...+.|+.|-.+-.-
T Consensus 440 ~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~t--lL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~ 517 (970)
T KOG0946|consen 440 LDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDT--LLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVK 517 (970)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHH
Confidence 346887766655555555667777665555555555421 22222332221 1122356778899888664210
Q ss_pred ccCccccccCCCCccChhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHccC
Q 045023 435 VNNVGVLNIEDPITVTESDAVDVVEIAIKHH--SSDITTKAMAMVALLKLSSRF 486 (812)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~--~~~~~vk~~iLtAl~KL~~r~ 486 (812)
.+. +++.++.+|...+-.. .++..+..-+++-++-++..|
T Consensus 518 ----dFL--------s~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~lLgl~~~f 559 (970)
T KOG0946|consen 518 ----DFL--------SESSIIQYLTTQLMDNQGSESEQVIQGLCAFLLGLCYYF 559 (970)
T ss_pred ----HHH--------ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHc
Confidence 011 1234666665554433 222344444444445555554
No 178
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=46.10 E-value=28 Score=34.59 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=20.6
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhc
Q 045023 295 ATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
..|..||..+++.+|..++|+|..+|
T Consensus 161 ~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 161 NLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44677888899999999999999886
No 179
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=45.30 E-value=5.5e+02 Score=32.49 Aligned_cols=104 Identities=15% Similarity=0.333 Sum_probs=62.9
Q ss_pred HHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccC--HhHHHHHHHHHHHhcCCC----CHHHHH
Q 045023 257 INILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLD--ASIRKRALELVYLLVNES----NVKPLT 329 (812)
Q Consensus 257 i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D--~sIr~~aLell~~l~n~~----Nv~~Iv 329 (812)
.+....|+. ++..+.|.++|..+.++++...+..---+..||..++|++ ..++.| ||+|-.|+++. |+++=+
T Consensus 69 w~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~FF~vI~~~p~~edL~~r-Le~L~~LTDnG~~It~~Ee~i 147 (1697)
T KOG3687|consen 69 WKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRALFFKVIKDYPSNEDLHER-LEVLKALTDNGRHITYLEEEL 147 (1697)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchHHHHHH-HHHHHHHhhCCccccchHHHH
Confidence 344444443 4567889999999999988765443333445555566543 234444 78888887653 444433
Q ss_pred HHHH-HHhh--------------------hcCHHHHHHHHHHHHHHHhhhCCc
Q 045023 330 KELI-DYLE--------------------ISDQEFKGDLTAKICSMVEKFSPD 361 (812)
Q Consensus 330 ~eLl-~yl~--------------------~~d~~~~~~li~~I~~la~k~~~~ 361 (812)
..++ .++. ..|.++..-++..+|.+|.+++..
T Consensus 148 G~f~l~W~~~~l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~~c~lc~~t~~~ 200 (1697)
T KOG3687|consen 148 GDFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIARLMVQMICLLCVRTASS 200 (1697)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccc
Confidence 2221 1111 136788888999999998887643
No 180
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=44.17 E-value=1.4e+02 Score=27.61 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=63.7
Q ss_pred HHHHHHHhhc-CCCcchHHHHHHHHHHHHhh---CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCC-CHHHHHH
Q 045023 256 AINILGRFLS-NRDNNIRYVALNMLMKAITV---DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNES-NVKPLTK 330 (812)
Q Consensus 256 ~i~~L~~fL~-~~d~niryvaL~~L~~l~~~---~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~-Nv~~Iv~ 330 (812)
....+.+.|. ++.++.|.-++-.+..++.+ .++.+..-...+.......+. .+.+|-.+..++... +...+=+
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~lp~ 84 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDSLPR 84 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccccccCCH
Confidence 3456666666 66778887777777777655 467777766777666555444 688899999888887 7766656
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhC
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFS 359 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~ 359 (812)
+..+++...+. +...+..++++|.
T Consensus 85 ~~~~~l~~~~~-----l~~~L~~l~~~~~ 108 (121)
T PF12397_consen 85 KVFKALLKLPD-----LIELLSELSEKYD 108 (121)
T ss_pred HHHHHHHcCcc-----HHHHHHHHHhcCC
Confidence 66666654332 4455555555554
No 181
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=44.11 E-value=99 Score=29.34 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=51.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cchhh----H-HHHHHHHHHhccCCC--cce
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEM----A-RDLAPEVERLLQFRD--PNI 156 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~----~-~~l~~~V~~ll~~~~--pyV 156 (812)
-+-+.++-+.+.+++-.--++..|+|=|+|+||.++-+||..|-.+ |...+ + +.+...+.+++.++. +.|
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~V 98 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLV 98 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHH
Confidence 3446666667777777888999999999999999999999988654 33333 2 235666677776633 337
Q ss_pred eccC
Q 045023 157 RKKP 160 (812)
Q Consensus 157 RKkA 160 (812)
|+|+
T Consensus 99 k~ki 102 (133)
T smart00288 99 KKRI 102 (133)
T ss_pred HHHH
Confidence 7775
No 182
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.93 E-value=5e+02 Score=28.92 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=60.3
Q ss_pred HHHHHhhcC-CCcchHHHHHHHHHHHHhhCHHHHHHhH-----hhhcccccc--cCHhHHHHHHHHHHHhcCCCCHHHH-
Q 045023 258 NILGRFLSN-RDNNIRYVALNMLMKAITVDAQAVQRHR-----ATILECVKD--LDASIRKRALELVYLLVNESNVKPL- 328 (812)
Q Consensus 258 ~~L~~fL~~-~d~niryvaL~~L~~l~~~~p~~v~~h~-----~~i~~cL~d--~D~sIr~~aLell~~l~n~~Nv~~I- 328 (812)
..|.+.|++ .+...|--||-.+..++..++.....+. .-+..++.+ .+.-.|++++.|+..++-++....-
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 344444544 4455568888888888888776555433 224456766 7788899999999888766654432
Q ss_pred HHH------HHHHhhhcCHHHHHHHHHHHHHHHhhh
Q 045023 329 TKE------LIDYLEISDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 329 v~e------Ll~yl~~~d~~~~~~li~~I~~la~k~ 358 (812)
+.. +..+...-+.++...++.++..+...+
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 211 111222235556666666555555433
No 183
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.89 E-value=91 Score=31.46 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=61.6
Q ss_pred CChhHHHHHhhccCCCCchhHHHHHHHHhccc-chhH----HHHHHHHHHhhcCCCCHhHHHHHHHHHhcc--CchhhHH
Q 045023 67 HFGQMECLKSIASAGFPEKRIGYLGLMLLLDE-RQEV----LMLVTNSLKQDLNHTNQYIVGLALCALGNI--CSAEMAR 139 (812)
Q Consensus 67 ~~~~~evikli~s~~~~~KRlgYL~~~~ll~~-~~el----~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I--~~~e~~~ 139 (812)
+...+-+..=+...++..+-++.-++.-+++. .++- +--+|--|++-|++.|+.+.+.+|.+|..+ +++.+.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 44445555556677788888888888888776 4443 444556789999999999999999999887 5566667
Q ss_pred HHHHHHHHhcc
Q 045023 140 DLAPEVERLLQ 150 (812)
Q Consensus 140 ~l~~~V~~ll~ 150 (812)
.|.|...++|.
T Consensus 117 aLvPyyrqLLp 127 (183)
T PF10274_consen 117 ALVPYYRQLLP 127 (183)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 184
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.78 E-value=4e+02 Score=27.80 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=86.2
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC-CC----hhHHHHHHHH
Q 045023 185 AGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE-DN----GGLRVLAINI 259 (812)
Q Consensus 185 ~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~-~~----~~L~~l~i~~ 259 (812)
....+|=.+..+|+.|..++..+......+..+|..+.... +.-.-|-+.+.+..+- .+ +.|+......
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~------~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~ 83 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQG------SLELRYVALRLLTLLWKANDRHFPFLQPLLLLL 83 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCC------chhHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 34567778999999999888765223334445555554321 1111123334433331 11 2233222221
Q ss_pred HHHhh---cC--CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccc-cccCHhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 045023 260 LGRFL---SN--RDNNIRYVALNMLMKAITVDAQAVQRHRATILECV-KDLDASIRKRALELVYLLVNESNVKPLTKELI 333 (812)
Q Consensus 260 L~~fL---~~--~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL-~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl 333 (812)
..+.. .+ ..-+..|..-.++..++..+|+-=..-...|..|| .+.+..++-.+||.+..+| +.-+.++..-..
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc-~~~vvd~~s~w~ 162 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC-EAEVVDFYSAWK 162 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHhhccHHHHHH
Confidence 12211 11 22334454456778888888874334445566788 7899999999999999999 222333222222
Q ss_pred HHhhhcCHHHHHHHHHHHHHHH
Q 045023 334 DYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 334 ~yl~~~d~~~~~~li~~I~~la 355 (812)
.-..+-+.+.+..++..++.+.
T Consensus 163 vl~~~l~~~~rp~v~~~l~~l~ 184 (234)
T PF12530_consen 163 VLQKKLSLDYRPLVLKSLCSLF 184 (234)
T ss_pred HHHHhcCCccchHHHHHHHHHH
Confidence 1112224445555555555444
No 185
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=43.62 E-value=2.6e+02 Score=31.10 Aligned_cols=110 Identities=14% Similarity=0.259 Sum_probs=71.4
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH----hHhhhc----ccccccCHhHHHHHHHHHHHhc-CCCCHHHHHH
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR----HRATIL----ECVKDLDASIRKRALELVYLLV-NESNVKPLTK 330 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~----h~~~i~----~cL~d~D~sIr~~aLell~~l~-n~~Nv~~Iv~ 330 (812)
+-+++....-++--=|+.++..+...++.++.. |...++ .+|..++--.||.+|.||..|. +..|...+.
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~- 247 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT- 247 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH-
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH-
Confidence 334555666667777778888887777765443 333333 4677888899999999998664 777766554
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l 398 (812)
+|..+. -.+..++.+|+.....+.-|.-+.+.-.+. +|.-
T Consensus 248 --------------------------~yi~~~-~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA-Np~K 287 (335)
T PF08569_consen 248 --------------------------RYISSP-ENLKLMMNLLRDKSKNIQFEAFHVFKVFVA-NPNK 287 (335)
T ss_dssp --------------------------HHTT-H-HHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-
T ss_pred --------------------------HHHCCH-HHHHHHHHHhcCcchhhhHHHHHHHHHHHh-CCCC
Confidence 333333 377888899998888888898877765554 4654
No 186
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.24 E-value=56 Score=31.61 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=49.5
Q ss_pred HHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cchhh-----HHHHHHHHHHhccC-CCcceeccC
Q 045023 90 LGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEM-----ARDLAPEVERLLQF-RDPNIRKKP 160 (812)
Q Consensus 90 L~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~-----~~~l~~~V~~ll~~-~~pyVRKkA 160 (812)
|-++-..+.+++-.--++..|+|=|+|+|+.++-+||..|-.+ |...+ .+.+..++.+++.. .++-||.|+
T Consensus 22 l~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ki 101 (144)
T cd03568 22 LDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKL 101 (144)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence 3344455555556677888999999999999999999877553 33322 23456677777777 566777765
No 187
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=43.19 E-value=1.4e+02 Score=32.64 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHH
Q 045023 196 LLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVA 275 (812)
Q Consensus 196 lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryva 275 (812)
|+-+|.-+-....+..+....++..+... .+....|+|.=.++- ..++.|.-|.+.+.+.+.....+.--..
T Consensus 140 i~slLpGLede~sE~~~~~~~ll~~l~~~------v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~~~~~~~ 211 (307)
T PF04118_consen 140 ILSLLPGLEDEGSEFFDRTLKLLDKLKEA------VGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQNDELSLS 211 (307)
T ss_pred HHHhccccccCCchHHHHHHHHHHHHHHh------cChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCcccccccccc
Confidence 33333333323333445556667766643 355567776644332 4556666777777776643222111112
Q ss_pred HHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHH
Q 045023 276 LNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYL 318 (812)
Q Consensus 276 L~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~ 318 (812)
......++..+|..+.+ .+..||.|+++-|+|-+||++..
T Consensus 212 ~~~~~~~~~~~~~Llv~---al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 212 SEEQEYCLGPDPGLLVR---ALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred hHHHHHhcCCCccHHHH---HHHHHhCCchHHHHHHHHHHHHH
Confidence 22333345556666654 35679999999999999999875
No 188
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.90 E-value=62 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCC
Q 045023 282 AITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNE 322 (812)
Q Consensus 282 l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~ 322 (812)
+...++..+..-...+...|++.++.||.++|.+|-.+|..
T Consensus 28 ~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 28 LTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 33334444444444445555555566666666555554443
No 189
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.86 E-value=48 Score=37.01 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=60.9
Q ss_pred cCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cch----hh-HHHHHHHHHHhcc
Q 045023 79 SAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSA----EM-ARDLAPEVERLLQ 150 (812)
Q Consensus 79 s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~----e~-~~~l~~~V~~ll~ 150 (812)
-.+-.++-=+-|.++-...++++..-=++-+|.|=|+|.++.|+-+||+.+..+ |.. |+ .+++..++.+++.
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 344455555667777777788888888888999999999999999999988664 222 22 3567788888888
Q ss_pred -CCCcceeccC
Q 045023 151 -FRDPNIRKKP 160 (812)
Q Consensus 151 -~~~pyVRKkA 160 (812)
..++-|++|-
T Consensus 99 ~~~h~kV~~k~ 109 (462)
T KOG2199|consen 99 SKAHPKVCEKM 109 (462)
T ss_pred hcccHHHHHHH
Confidence 5667777664
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=42.36 E-value=1.2e+02 Score=36.46 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-HHHHH-HhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHH
Q 045023 252 LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD-AQAVQ-RHRATILECVKDLDASIRKRALELVYLLVNESNVKPLT 329 (812)
Q Consensus 252 L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-p~~v~-~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv 329 (812)
..+..+..|.+++...|.-||.+-|+.+-..+..- ++.+. +-...+..-+.|.|..||..+|.-+.-|+-.=|-+.+=
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 33456778889999999999999999998887643 22221 11233445677899999999888887777777767777
Q ss_pred HHHHHHhhh
Q 045023 330 KELIDYLEI 338 (812)
Q Consensus 330 ~eLl~yl~~ 338 (812)
.||+.|+.+
T Consensus 407 ~Ellr~~ar 415 (690)
T KOG1243|consen 407 GELLRYLAR 415 (690)
T ss_pred HHHHHHHHh
Confidence 888888754
No 191
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.89 E-value=7.6e+02 Score=30.19 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=99.8
Q ss_pred HHHHHHhhccccCCCCcchHHHHHHHHHHhc---CCChhHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 216 DILAQVATKTESNKNAGNAILYECVETIMSI---EDNGGLRVLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 216 diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i---~~~~~L~~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
.+....++| +++.+...+...|.-++..+ +.+ .-.-....|.+.+. +.+|-||-=|.--|..+.-.....+.
T Consensus 895 pvVeE~csn--~~~~sd~~lq~aA~l~L~klMClS~~--fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d 970 (1128)
T COG5098 895 PVVEEGCSN--SSRFSDEELQVAAYLSLYKLMCLSFE--FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD 970 (1128)
T ss_pred HHHHHHhcc--ccccCCHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH
Confidence 344444444 24445666766666555432 221 10011122222233 67788887776666666666667788
Q ss_pred HhHhhhcccccccCHhHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 045023 292 RHRATILECVKDLDASIRKRALELVYLL--VNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQM 369 (812)
Q Consensus 292 ~h~~~i~~cL~d~D~sIr~~aLell~~l--~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~l 369 (812)
+|-..+++-|.|.|.++||.+|-.+.-| ++.=-++.-..++-..+.+.|.++...+=.-...+|.|-...+.-++|+.
T Consensus 971 e~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidif 1050 (1128)
T COG5098 971 EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIF 1050 (1128)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHH
Confidence 8888888899999999999999877544 55556777788888888888888877666666677777666666667766
Q ss_pred HHHH
Q 045023 370 LKVL 373 (812)
Q Consensus 370 l~lL 373 (812)
-.+-
T Consensus 1051 s~ls 1054 (1128)
T COG5098 1051 STLS 1054 (1128)
T ss_pred HHcC
Confidence 5543
No 192
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=40.61 E-value=86 Score=35.39 Aligned_cols=125 Identities=12% Similarity=0.219 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhC-CchhH----HHHHHHHHHhhcC-ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHH
Q 045023 345 GDLTAKICSMVEKFS-PDKIW----YIDQMLKVLSEAG-NFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQES 418 (812)
Q Consensus 345 ~~li~~I~~la~k~~-~~~~w----~vd~ll~lL~~~g-~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~ 418 (812)
.+++.-+|.+...|+ |-.+- .+.+++.+-+..+ .....++...+++.+.++|.+-..++..|.++.....++..
T Consensus 237 aELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KE 316 (457)
T KOG2085|consen 237 AELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKE 316 (457)
T ss_pred HHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcce
Confidence 455666666666665 33333 3344444333322 12234555566777778888777777777766653322221
Q ss_pred HHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHH
Q 045023 419 LVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIV 498 (812)
Q Consensus 419 l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~ 498 (812)
+-.+||-.+. ++.++ +. .|..+...+-+-+.
T Consensus 317 -----VmFL~ElEEI---------------------Le~ie--------p~---------------eFqk~~~PLf~qia 347 (457)
T KOG2085|consen 317 -----VMFLNELEEI---------------------LEVIE--------PS---------------EFQKIMVPLFRQIA 347 (457)
T ss_pred -----eeeHhhHHHH---------------------HHhcC--------HH---------------HHHHHhHHHHHHHH
Confidence 2234444332 22111 01 12223344556778
Q ss_pred HhhCCCChHHHHHHHHHHHH
Q 045023 499 QNKGSLVLELQQRSIEFNSI 518 (812)
Q Consensus 499 ~~~~s~~~evqqRA~ey~~L 518 (812)
.|.+|.+.-|-.||.+||+.
T Consensus 348 ~c~sS~HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 348 RCVSSPHFQVAERALYLWNN 367 (457)
T ss_pred HHcCChhHHHHHHHHHHHhh
Confidence 88999999999999999973
No 193
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=40.22 E-value=4e+02 Score=31.49 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=22.9
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccC
Q 045023 262 RFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLD 305 (812)
Q Consensus 262 ~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D 305 (812)
.+|...+|.-+...-.....|.+..++.++.+..++...+.|.|
T Consensus 206 ~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 206 ALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 34555554443333333334445667777777666555555544
No 194
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.02 E-value=4e+02 Score=26.73 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC
Q 045023 289 AVQRHRATILECVKDLDASIRKRALELVYLLVNES--NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFS 359 (812)
Q Consensus 289 ~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~--Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~ 359 (812)
++|+|...|++|.-++|..+|..|++++-.+.... |=...+..|+.-..+.++.++..+..-...+.+||+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 45555555555555555555555555554433222 223344444444444455555555555555555553
No 195
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.51 E-value=1.5e+02 Score=36.63 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=52.2
Q ss_pred cCCCcchHHHHHHHHHHHHhhC-H-HHHH--HhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHH-Hhhh
Q 045023 265 SNRDNNIRYVALNMLMKAITVD-A-QAVQ--RHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELID-YLEI 338 (812)
Q Consensus 265 ~~~d~niryvaL~~L~~l~~~~-p-~~v~--~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~-yl~~ 338 (812)
.++.+-+|--||.+|.++...+ + ..++ +-...+++.|+|.|.++=.-|+..+..||.-- =+.|++.|.+ |...
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-PEDILPDLSEEYLSE 814 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-chhhHHHHHHHHHhc
Confidence 4455778999999999999843 2 2222 22244567899999999999999888888763 3567777777 5543
No 196
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.41 E-value=1.1e+02 Score=29.42 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=47.8
Q ss_pred HHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cch----hhH-HHHHHHHHHhccC------CCcc
Q 045023 90 LGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSA----EMA-RDLAPEVERLLQF------RDPN 155 (812)
Q Consensus 90 L~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~----e~~-~~l~~~V~~ll~~------~~py 155 (812)
+.++-+.+.+++-..-++-.|+|=|+|+|+.+.-+||..|-.+ |.. +++ +.+..++.+++.. .++-
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 3344444555555667888899999999999999999776443 333 444 4556778888853 3456
Q ss_pred eeccC
Q 045023 156 IRKKP 160 (812)
Q Consensus 156 VRKkA 160 (812)
||+|.
T Consensus 103 Vk~ki 107 (139)
T cd03567 103 VKTKI 107 (139)
T ss_pred HHHHH
Confidence 66664
No 197
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.32 E-value=5.6e+02 Score=28.51 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=69.4
Q ss_pred HHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHHHhhhCCchh
Q 045023 291 QRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEIS-------DQEFKGDLTAKICSMVEKFSPDKI 363 (812)
Q Consensus 291 ~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~-------d~~~~~~li~~I~~la~k~~~~~~ 363 (812)
|-|...|...+.+++..-|..||+ .|-++.-+..++..+..|+... +...-..+++-+..+..+=.=.-+
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~---sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQ---SLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH---HhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 334445555555556666666655 4566777888888888887642 222222222333222221111112
Q ss_pred HHHHH----HHHHHhhc--Cc--------cchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhccchHHHHHHHHH
Q 045023 364 WYIDQ----MLKVLSEA--GN--------FVKDEVWHALIVVISN----ASDLHGYTVRALYRAVQTSIEQESLVRVAIW 425 (812)
Q Consensus 364 w~vd~----ll~lL~~~--g~--------~v~~e~i~~i~~li~~----~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~W 425 (812)
-|+.. ++.++-.. +. .+++.....+..++++ ++.++.+++..+.+.+.+...+-...=.++-
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 22222 33222110 11 2344444444445544 6678888888888888764433333334455
Q ss_pred hhhhccc
Q 045023 426 CIGEYGD 432 (812)
Q Consensus 426 iiGEY~~ 432 (812)
.+++.|.
T Consensus 334 GL~~lG~ 340 (343)
T cd08050 334 GLSALGP 340 (343)
T ss_pred HHHHhCc
Confidence 5555554
No 198
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=39.15 E-value=6.4e+02 Score=28.80 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhc--------------------cccCCCCcchHHHHHHHHHHh
Q 045023 192 LHIRLLKLLHVLGQGDADASDCMNDILAQVATK--------------------TESNKNAGNAILYECVETIMS 245 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~--------------------~~~~kn~~~aVl~e~v~~i~~ 245 (812)
-|--+|++|..+...||+..+.+..+|.++.-. -++.++.|-|=++|.+-.|+.
T Consensus 175 d~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIn 248 (457)
T KOG2085|consen 175 DQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIIN 248 (457)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcC
Confidence 477789999999999998887776666554321 145567788888888877764
No 199
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=39.04 E-value=3.8e+02 Score=26.48 Aligned_cols=86 Identities=24% Similarity=0.289 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHhhC--------HHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCH-HHH------HHHHHH
Q 045023 270 NIRYVALNMLMKAITVD--------AQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNV-KPL------TKELID 334 (812)
Q Consensus 270 niryvaL~~L~~l~~~~--------p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv-~~I------v~eLl~ 334 (812)
++--.+|.++..++... +..+++-...+- -...|.+|-+++|.+|-.++..+.- ..+ ++.|+.
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn--~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVN--SSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHc--cccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHH
Confidence 55555677777776532 334444322221 2233788888888888877765543 333 355777
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhh
Q 045023 335 YLEISDQEFKGDLTAKICSMVEK 357 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k 357 (812)
+++..+.++....+.-|-.+-.|
T Consensus 110 hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhc
Confidence 88878888777776666555544
No 200
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.52 E-value=82 Score=36.55 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH------hHhhhcccccc--cCHhHHHHHHHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR------HRATILECVKD--LDASIRKRALELVYL 318 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~------h~~~i~~cL~d--~D~sIr~~aLell~~ 318 (812)
++..|.+-|.++.+.++|.||..|-.++...-..|.. .....+.+.+. .|.-||.|+|++|..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 5566677788899999999999777777654433332 22334445543 577888888888764
No 201
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=38.46 E-value=9.1e+02 Score=30.40 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhhcCCC-CHhHHHHHHHHHhccCch-----hhHHH-HHHHHHHhccCCCcceeccC
Q 045023 100 QEVLMLVTNSLKQDLNHT-NQYIVGLALCALGNICSA-----EMARD-LAPEVERLLQFRDPNIRKKP 160 (812)
Q Consensus 100 ~el~~L~~Nsl~kDL~s~-n~~i~~lAL~~Ls~I~~~-----e~~~~-l~~~V~~ll~~~~pyVRKkA 160 (812)
.+.+.-.++.+++++.+. -|...+-|+-+++...+. .+... +...|.-+..|..|++|-+|
T Consensus 444 dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a 511 (1005)
T KOG2274|consen 444 DDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISA 511 (1005)
T ss_pred HHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHH
Confidence 456777888899998754 588888888888865443 22222 22233334457788998888
No 202
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=38.46 E-value=6.8e+02 Score=28.95 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=37.2
Q ss_pred CcchHHHHHHHHHHhcC-CChhHHHHHH-----HHHHHhhcCC-----CcchHHHHHHHHHHHHhhCH
Q 045023 231 AGNAILYECVETIMSIE-DNGGLRVLAI-----NILGRFLSNR-----DNNIRYVALNMLMKAITVDA 287 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~-~~~~L~~l~i-----~~L~~fL~~~-----d~niryvaL~~L~~l~~~~p 287 (812)
....+..||.||+.++- .++..|..++ ..+...|... +.++.|+.++.|-.+....+
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~ 111 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP 111 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh
Confidence 45679999999999752 3344443332 3344555443 78999999998876654443
No 203
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=38.40 E-value=5.8e+02 Score=28.12 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCCCch-hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchH
Q 045023 194 IRLLKLLHVLGQGDAD-ASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIR 272 (812)
Q Consensus 194 v~lL~lL~~l~~~~~~-~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~nir 272 (812)
.++++....+...+.. .-..+..+|..+.....+.. .......+.++.|+. --...+-+-|++..+.+.
T Consensus 4 ~~l~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~-~~~~~g~~l~~~iL~---------~~~k~lyr~L~~~~~~~~ 73 (330)
T PF11707_consen 4 SELLQIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDL-SFQSYGLELIRSILQ---------NHLKLLYRSLSSSKPSLT 73 (330)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHH---------HHHHHHHHHhCcCcHHHH
Confidence 3567777777654432 21222333443332221110 123344566666653 114566677788777788
Q ss_pred HHHHHHHHHHHhhCH-HHHHHhHh-------hhccccc------ccC-------HhHHHHHHHHHHHhcCCCCHHHH---
Q 045023 273 YVALNMLMKAITVDA-QAVQRHRA-------TILECVK------DLD-------ASIRKRALELVYLLVNESNVKPL--- 328 (812)
Q Consensus 273 yvaL~~L~~l~~~~p-~~v~~h~~-------~i~~cL~------d~D-------~sIr~~aLell~~l~n~~Nv~~I--- 328 (812)
-.+|+.|..++..+. .....-.. .+-.++. +.+ .+||.-.++.+.+++...+-...
T Consensus 74 ~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~l 153 (330)
T PF11707_consen 74 NPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDL 153 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHH
Confidence 899999999998443 22211111 1111111 010 27888888777776665553322
Q ss_pred ------HHHHHHHhhhcCHHHHHHHHHHHHH
Q 045023 329 ------TKELIDYLEISDQEFKGDLTAKICS 353 (812)
Q Consensus 329 ------v~eLl~yl~~~d~~~~~~li~~I~~ 353 (812)
+.-+..++...+.+....++..+..
T Consensus 154 L~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 154 LSQKKLMSALFKGLRKDPPETVILILETLKD 184 (330)
T ss_pred HHcCchHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 3334445555555555555555553
No 204
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.91 E-value=41 Score=36.65 Aligned_cols=67 Identities=13% Similarity=0.308 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCcc-hHHHHHHHHHHHHhhCHHH---HHHh--HhhhcccccccCHhHHHHHHHHHHHhcCC
Q 045023 256 AINILGRFLSNRDNN-IRYVALNMLMKAITVDAQA---VQRH--RATILECVKDLDASIRKRALELVYLLVNE 322 (812)
Q Consensus 256 ~i~~L~~fL~~~d~n-iryvaL~~L~~l~~~~p~~---v~~h--~~~i~~cL~d~D~sIr~~aLell~~l~n~ 322 (812)
.+..|..+|.++.+| .-.||++-+..+++..|+. +.++ +..|+++++++|..||-.||.-+..++.+
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 356677788888888 7889999999999999864 3333 35688999999999999999998877654
No 205
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=37.36 E-value=65 Score=32.07 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhc
Q 045023 236 LYECVETIMSIEDN-GGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIL 298 (812)
Q Consensus 236 l~e~v~~i~~i~~~-~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~ 298 (812)
.|||+.+++....+ -.+... .+.+..=|.. +..||.++..+|.+++...|..+.++...+.
T Consensus 47 ayE~lytlLd~~~~~~~~~~~-~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~ 108 (169)
T PF08623_consen 47 AYECLYTLLDTCLSRIDISEF-LDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLV 108 (169)
T ss_dssp HHHHHHHHHHSTCSSS-HHHH-HHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTH
T ss_pred HHHHHHHHHHHHHHhCCHHHH-HHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 58888888764322 122222 3444443455 8999999999999999999998888755444
No 206
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=3.4e+02 Score=32.96 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhcCCCCHhHHHHHHHHHhc---cCchhh--------HHHHHHHHHHhccCCCcceeccCCCchhHHHHHH
Q 045023 103 LMLVTNSLKQDLNHTNQYIVGLALCALGN---ICSAEM--------ARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLR 171 (812)
Q Consensus 103 ~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~---I~~~e~--------~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~ 171 (812)
..|.-..+-+-|.-+|..||+.|+..+-+ |..|+. .+-=+..+.++|.|.-|.||..| +..+
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a------~~gv- 244 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTA------ILGV- 244 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH------HHHH-
Confidence 55666777888889999999999887766 344443 23335556677788878888666 1111
Q ss_pred HHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHH---hcCC
Q 045023 172 DVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIM---SIED 248 (812)
Q Consensus 172 ~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~---~i~~ 248 (812)
+++...+..+-+. ..+.++|..|..- .++.....|-..+++.+- .-+.
T Consensus 245 ----------------------~k~~s~fWe~iP~-----~i~~~ll~kI~d~--~a~dt~s~VR~svf~gl~~~l~np~ 295 (1005)
T KOG1949|consen 245 ----------------------CKITSKFWEMIPP-----TILIDLLKKITDE--LAFDTSSDVRCSVFKGLPMILDNPL 295 (1005)
T ss_pred ----------------------HHHHHHHHHHcCH-----HHHHHHHHHHHHH--hhhccchheehhHhcCcHHHHcCcc
Confidence 1111112111111 1122333333321 112223355544444444 3344
Q ss_pred ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH--hHhhhcccccccCHhHHHHHHHHHHHhcCCCC
Q 045023 249 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR--HRATILECVKDLDASIRKRALELVYLLVNESN 324 (812)
Q Consensus 249 ~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N 324 (812)
..++.+.....++-.|..+..-+|-.+.+.|.+|-...---|-. -+..++.-|.-+..-+.||-+.+++..+=+.|
T Consensus 296 sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~ 373 (1005)
T KOG1949|consen 296 SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVN 373 (1005)
T ss_pred chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Confidence 55666666677777788888889999999888875432111100 12344555665666777777777777655444
No 207
>smart00340 HALZ homeobox associated leucin zipper.
Probab=35.82 E-value=25 Score=26.29 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.7
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHc
Q 045023 18 RACKTAAEERAVVRKECAAIRAAIN 42 (812)
Q Consensus 18 r~~~t~~eEr~~i~~E~a~Ir~~l~ 42 (812)
|-|.+..||-.+.++|++++|..-.
T Consensus 12 rcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 12 RCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999996543
No 208
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.54 E-value=1e+03 Score=30.25 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH---HhHhhhcccccccCHhHHHHHHHHHHHhcCC-----C
Q 045023 252 LRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ---RHRATILECVKDLDASIRKRALELVYLLVNE-----S 323 (812)
Q Consensus 252 L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~---~h~~~i~~cL~d~D~sIr~~aLell~~l~n~-----~ 323 (812)
+..-+..+|..+..+.-.-+|--++..|..+...+|-.++ ...-.++-.++|.+..+-.+|++++..+..+ +
T Consensus 613 ~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~ 692 (1529)
T KOG0413|consen 613 KFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSS 692 (1529)
T ss_pred cchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCC
Confidence 3333355666667777777888899999999988887773 2234455568888999999999988877665 2
Q ss_pred C-HHHHHHHHHHHhhhcCHHHHHHH--HHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC
Q 045023 324 N-VKPLTKELIDYLEISDQEFKGDL--TAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASD 397 (812)
Q Consensus 324 N-v~~Iv~eLl~yl~~~d~~~~~~l--i~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~ 397 (812)
- .=.++.++-.|.. .+.++ ..++...-+|+.+ ..+|-+ ....|....+..|-.+.++..+.+.
T Consensus 693 dlaW~LL~~i~~~~~-----~s~yl~~~~h~w~~~~k~~~---t~~d~~---~~hsG~E~~~~aWm~~s~~~~q~~~ 758 (1529)
T KOG0413|consen 693 DLAWTLLDTIESVTN-----HSQYLMSTLHDWVREKKVKR---TVMDSM---KQHSGSEKLDGAWMVFSQLCVQFEQ 758 (1529)
T ss_pred chHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcch---hhhhhh---hcccCcccCcchHHHHHHHHhcccc
Confidence 2 2233344433332 11222 2222222233322 233333 3346777778899888888877765
No 209
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.10 E-value=2e+02 Score=27.28 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQ 288 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~ 288 (812)
+-|+..|.+-|.++++++.+.||..|-.++.....
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 45677788888899999999999999888766433
No 210
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=33.24 E-value=1.4e+03 Score=30.88 Aligned_cols=155 Identities=11% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcc-cccccCHhHHHHHHHHHHH------------h--cCCCCHHHHHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHRATILE-CVKDLDASIRKRALELVYL------------L--VNESNVKPLTKE 331 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~-cL~d~D~sIr~~aLell~~------------l--~n~~Nv~~Iv~e 331 (812)
++..+-|+.++-|.++++.+..-...|...++. +|++ +++ .|-+|. | -+..+...++.-
T Consensus 878 ~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~---Yl~---VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~ 951 (2196)
T KOG0368|consen 878 AEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEE---YLE---VEKLFNGRDSHYEDVILRLREENKKDLKKVVDI 951 (2196)
T ss_pred ccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHH---HHH---HHHHhccCcchHHHHHHHHHHhhhhHHHHHHHH
Confidence 567788888888888888766555555544432 1111 111 111111 1 111222233332
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc--HHHHHHHHHH
Q 045023 332 LIDYLEISDQEFKGDLTAKICSMVEK-FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL--HGYTVRALYR 408 (812)
Q Consensus 332 Ll~yl~~~d~~~~~~li~~I~~la~k-~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l--~~~~v~~L~~ 408 (812)
.+.+ +...-|..++.+|..--.. -++....+.+.|.++-.... ....++...-++++...|.. +..-++.+..
T Consensus 952 i~SH---s~i~~KN~Lv~~ll~~l~~~s~~~~~~f~~iL~~l~~L~~-~~~~eVal~Ar~iLi~~ps~~~R~n~~e~i~~ 1027 (2196)
T KOG0368|consen 952 ILSH---SQIKSKNKLVLALLDQLKPPSSKVSDEFRDILRKLTELNH-TNTSEVALKARQILIQSPSYELRHNQIESILK 1027 (2196)
T ss_pred HHcc---hhhhhhhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 2222 2223344455444332222 22333456666666555442 23456665667777666653 3333444433
Q ss_pred HHhhccchHHHHHHHHHhhhhcccccc
Q 045023 409 AVQTSIEQESLVRVAIWCIGEYGDMLV 435 (812)
Q Consensus 409 ~l~~~~~~~~l~~~~~WiiGEY~~~l~ 435 (812)
.--..... ...+ ||++-..+++.
T Consensus 1028 s~i~~~g~-~~~~---~~~~~l~~lid 1050 (2196)
T KOG0368|consen 1028 SSIVMTGY-QFKK---PCLEILKELID 1050 (2196)
T ss_pred hhhhcccC-cccc---cchhHHHhhcc
Confidence 22222222 2223 88888887764
No 211
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.89 E-value=8.2e+02 Score=29.98 Aligned_cols=140 Identities=14% Similarity=0.216 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHH-HHHHH
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHG-YTVRA 405 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~-~~v~~ 405 (812)
..|.||+.+++..|.....++-..+-..... ....|.+..|++.....|.- -+ +.|+....+-|. +...+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~y~~~t~s~---~~----~~il~~~~~P~~K~~~~~ 74 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVNGLVDYYLSTNSQ---RA----LEILVGVQEPHDKHLFDK 74 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHHHHHHHHhhcCcH---HH----HHHHHhcCCccHHHHHHH
Confidence 3467888999998888888877766554322 33459999999987777653 22 223333333321 22334
Q ss_pred HHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 045023 406 LYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSR 485 (812)
Q Consensus 406 L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r 485 (812)
|-+++.+ ..-+..++-++|.+...- +..+ -.|.+..+++-+-+.|. ...+..+-...|++++-|.-+
T Consensus 75 l~~~~~~----~~~Rl~~L~Ll~~~v~~q--p~~l------~~i~~t~Lf~~LLk~L~-~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 75 LNDYFVK----PSYRLQALTLLGHFVRSQ--PPWL------YKILQTPLFKSLLKCLQ-FDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHcC----chhHHHHHHHHHHHHhcC--CchH------HHHhcChhHHHHHHHHh-hcccHHHHHHHHHHHHHHhcc
Confidence 4444442 222444455556554321 1100 01222334433323332 234577778888899999888
Q ss_pred CCC
Q 045023 486 FPS 488 (812)
Q Consensus 486 ~p~ 488 (812)
.|.
T Consensus 142 ip~ 144 (668)
T PF04388_consen 142 IPS 144 (668)
T ss_pred ccc
Confidence 875
No 212
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=32.23 E-value=2.4e+02 Score=28.47 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=53.4
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhHhhhccccc---ccCHhHHHHHHHHHHHhcCCCCHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHRATILECVK---DLDASIRKRALELVYLLVNESNVKPLT 329 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~~~i~~cL~---d~D~sIr~~aLell~~l~n~~Nv~~Iv 329 (812)
.+-.|.+-|.++|+.+.-.+|+.|..++...+ .++.+|...++.+++ +....+. -.++ | -...|+.++|
T Consensus 81 LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~g-d~i~--y--~~~~~~~dlI 155 (183)
T PF10274_consen 81 LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLG-DGID--Y--RKRKNLGDLI 155 (183)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC-cccc--c--ccccchhHHH
Confidence 45666677899999999999999999976653 667788777765544 1110000 0011 1 4678899999
Q ss_pred HHHHHHhhh
Q 045023 330 KELIDYLEI 338 (812)
Q Consensus 330 ~eLl~yl~~ 338 (812)
.|-++-++.
T Consensus 156 ~etL~~lE~ 164 (183)
T PF10274_consen 156 QETLELLER 164 (183)
T ss_pred HHHHHHHHH
Confidence 988888875
No 213
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=31.97 E-value=1.1e+03 Score=29.39 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=73.0
Q ss_pred cchHHHHHHHHHHHHhCC-Cc-HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHH
Q 045023 379 FVKDEVWHALIVVISNAS-DL-HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVD 456 (812)
Q Consensus 379 ~v~~e~i~~i~~li~~~p-~l-~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~ 456 (812)
.+...+...+..++..+- +. +...+.+++....++ .-..+..++.+|-+....+.. .++.++++.
T Consensus 533 ~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~-----------ei~~~~Llp 599 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQ-----------EITCEDLLP 599 (759)
T ss_pred HHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhcc-----------HHHHHHHhH
Confidence 345555555555554332 22 222333333332221 122345556666655554321 133455666
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHccC--CCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 457 VVEIAIKHHSSDITTKAMAMVALLKLSSRF--PSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 457 ~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~--p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
.+..+... ..+.||.-+.-.+-|+-... +...+.|+++++....|.|.++|-||..-...+.
T Consensus 600 ~~~~l~~D--~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 600 VFLDLVKD--PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHHhccC--CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 55554432 34688877766666655444 3446789999999999999999999998887774
No 214
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.91 E-value=5.1e+02 Score=33.18 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=47.1
Q ss_pred cCCCcchHHHHHHHHHHHHhhCHHHHH--HhHhhhcccccccCHhHHHHHHHHHHHhcCC
Q 045023 265 SNRDNNIRYVALNMLMKAITVDAQAVQ--RHRATILECVKDLDASIRKRALELVYLLVNE 322 (812)
Q Consensus 265 ~~~d~niryvaL~~L~~l~~~~p~~v~--~h~~~i~~cL~d~D~sIr~~aLell~~l~n~ 322 (812)
..-+++||-+.+..|..-+..+|..|- .|.+.|==.|.|....||++.+..|-.|...
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 345799999999999999999998764 3555554468899999999999999887655
No 215
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.51 E-value=7.8e+02 Score=29.33 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHH--hhCHHHHHHhHhhhcc-cccccCHhHHHHHHHHHHHh-cCCCCHHHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAI--TVDAQAVQRHRATILE-CVKDLDASIRKRALELVYLL-VNESNVKPLTKE 331 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~--~~~p~~v~~h~~~i~~-cL~d~D~sIr~~aLell~~l-~n~~Nv~~Iv~e 331 (812)
+-..+..++.++|+-+||-+.-++..-- ..+..+|.+ ++. ...|.+..+||-|.--|--+ |...|.-.=.-|
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~----lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tve 592 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVST----LLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVE 592 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhh----hheeecccCchHHHHHHHHheeeeEecCcchhhHHHH
Confidence 3345556677777777877765543221 122333332 222 25666667777665444333 333332221112
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHH-HHHhCCCcHH---HHHHHHH
Q 045023 332 LIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIV-VISNASDLHG---YTVRALY 407 (812)
Q Consensus 332 Ll~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~-li~~~p~l~~---~~v~~L~ 407 (812)
|+ .+..+...|.-...+++..|.- ....-++|+|-.++....++|++.....+-- +++.+|++.. .+.+++-
T Consensus 593 lL--s~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~ 668 (926)
T COG5116 593 LL--SESHNFHVRAGVAVALGIACAG--TGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFN 668 (926)
T ss_pred Hh--hhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHH
Confidence 22 1234556666666666666532 3455788999998999989998887655543 4466777643 3444444
Q ss_pred HHHh
Q 045023 408 RAVQ 411 (812)
Q Consensus 408 ~~l~ 411 (812)
..+.
T Consensus 669 ~vI~ 672 (926)
T COG5116 669 RVIV 672 (926)
T ss_pred HHHh
Confidence 4444
No 216
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.92 E-value=5.2e+02 Score=25.37 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHhhCHHHHHHhHhhhcccc---cccCHhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhhhcCHHHH
Q 045023 270 NIRYVALNMLMKAITVDAQAVQRHRATILECV---KDLDASIRKRALELVYLLVNESN--VKPLTKELIDYLEISDQEFK 344 (812)
Q Consensus 270 niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL---~d~D~sIr~~aLell~~l~n~~N--v~~Iv~eLl~yl~~~d~~~~ 344 (812)
-..| .++|..++..+|..+.+|.+.+-+.+ ..=+..+..+-+.-+.-|+.-+. -..++--|.+-+-..+.+.|
T Consensus 72 ~~~~--idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R 149 (158)
T PF14676_consen 72 SSQY--IDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLRDSLILVLRKAMFSRELDAR 149 (158)
T ss_dssp -HHH--HHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred hhHH--HHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHH
Confidence 3566 58899999999998888776654333 33344455555555555554441 11222223333333455666
Q ss_pred HHHHHHH
Q 045023 345 GDLTAKI 351 (812)
Q Consensus 345 ~~li~~I 351 (812)
..++..+
T Consensus 150 ~~Av~Gf 156 (158)
T PF14676_consen 150 QMAVNGF 156 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 217
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=29.99 E-value=1.6e+02 Score=35.95 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhc
Q 045023 506 LELQQRSIEFNSIVE 520 (812)
Q Consensus 506 ~evqqRA~ey~~Ll~ 520 (812)
-|.+|||.||..=|.
T Consensus 470 eeseqkA~e~~kk~~ 484 (1102)
T KOG1924|consen 470 EESEQKAAELEKKFD 484 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367788888765553
No 218
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=29.97 E-value=8.6e+02 Score=29.21 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH------HHHHHhHhhhcc-cccccCHhHHHHHHHHHHHh
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDA------QAVQRHRATILE-CVKDLDASIRKRALELVYLL 319 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p------~~v~~h~~~i~~-cL~d~D~sIr~~aLell~~l 319 (812)
.....|-.|+.....+|-..+..|..+..++| ..+.|+...|++ |..|.|. +|.-++.++..+
T Consensus 315 ~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~l 384 (740)
T COG5537 315 GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYL 384 (740)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHH
Confidence 34444556777778889999999999988776 356778788876 4558887 888888777655
No 219
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=29.74 E-value=8.4e+02 Score=27.37 Aligned_cols=189 Identities=12% Similarity=0.166 Sum_probs=94.0
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhHh----hhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHRA----TILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQE 342 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~~----~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~ 342 (812)
+..++-+-.|..+.+++...|..+..|.. .++..+-+....||.+|+.++..+. ..+. .+
T Consensus 146 ~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~-------------~~l~-~~-- 209 (372)
T PF12231_consen 146 PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK-------------KCLG-PN-- 209 (372)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH-------------HHhC-hh--
Confidence 44566677777777777777777666554 3455555667788888877765432 1111 11
Q ss_pred HHHHHHHHHHHHHhhhC-Cc--hhHHHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhh---ccc
Q 045023 343 FKGDLTAKICSMVEKFS-PD--KIWYIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDLHGYTVRALYRAVQT---SIE 415 (812)
Q Consensus 343 ~~~~li~~I~~la~k~~-~~--~~w~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~---~~~ 415 (812)
..+.+.+..+..+.- +. -+++.+.|.+++...++ ....++|..++.+++..--.+-.-+.......+. ..+
T Consensus 210 --~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d 287 (372)
T PF12231_consen 210 --KELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSD 287 (372)
T ss_pred --HHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCC
Confidence 111222222222211 11 34566667777776343 3567899999988854311111122333333321 111
Q ss_pred -hHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc----CC---CHHHHHHHHHHHHHHHcc
Q 045023 416 -QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH----SS---DITTKAMAMVALLKLSSR 485 (812)
Q Consensus 416 -~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~----~~---~~~vk~~iLtAl~KL~~r 485 (812)
.-...+..+|-.==| ..+... .+....+.+|..-+... .. ..+++.+++..+..+.-.
T Consensus 288 ~~~k~~A~~aW~~liy---~~~~~~---------~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 288 PQVKIQAFKAWRRLIY---ASNPNE---------LTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHHHHHHH---HhcCCc---------cccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 223344456654444 111110 11234555443322211 11 237888888888877643
No 220
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=29.72 E-value=3.5e+02 Score=25.98 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
..-+..+|.+-.|-. .. .+ -+-|+..|.+-|. ++++++.+.||..|-.++..-..-|.
T Consensus 17 ~dw~~ileicD~In~-~~-~~-~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh 75 (141)
T cd03565 17 EDWGLNMEICDIINE-TE-DG-PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFH 75 (141)
T ss_pred cCHHHHHHHHHHHhC-CC-Cc-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHH
Confidence 344566666665532 21 12 2346777777665 57899999999988888766544443
No 221
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.48 E-value=7.9e+02 Score=26.98 Aligned_cols=264 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHhcccchhHHHHHHHHHHhhcCC-CCHhHHHHHHHHHhc----cCchhhHHHHHHHHHHhccCCCccee
Q 045023 83 PEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH-TNQYIVGLALCALGN----ICSAEMARDLAPEVERLLQFRDPNIR 157 (812)
Q Consensus 83 ~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s-~n~~i~~lAL~~Ls~----I~~~e~~~~l~~~V~~ll~~~~pyVR 157 (812)
.+-|+.+.-+-..+.. ..+..-+++.+-.=+.. .|+-..+.++.+++. + +.++-..++..+.+.++++.+-||
T Consensus 1 ad~r~~~~~~L~~l~~-~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred CcHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Q ss_pred ccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHH
Q 045023 158 KKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILY 237 (812)
Q Consensus 158 KkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~ 237 (812)
|-- ...+...|. ...+......+.+++..+.+ .+
T Consensus 79 ~~w--------------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~------------~~ 112 (339)
T PF12074_consen 79 RAW--------------------------------LLCLGEALW--ESPNSDSLKFAEPFLPKLLQ------------SL 112 (339)
T ss_pred HHH--------------------------------HHHHHHHHh--hccCchHHHHHHHHHHHHHH------------HH
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHH-------------------------------HhhcC-CCcchHHHHHHHHHHHHhh
Q 045023 238 ECVETIMSIEDNGGLRVLAINILG-------------------------------RFLSN-RDNNIRYVALNMLMKAITV 285 (812)
Q Consensus 238 e~v~~i~~i~~~~~L~~l~i~~L~-------------------------------~fL~~-~d~niryvaL~~L~~l~~~ 285 (812)
+-+..=-.-....+...-++-.+. ++.+. .+.+-....++.+..+...
T Consensus 113 ~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~ 192 (339)
T PF12074_consen 113 KEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSD 192 (339)
T ss_pred HHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhc
Q ss_pred CHHHH-----HHhHhhhccccccc--CHhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhhhcC------------HHH
Q 045023 286 DAQAV-----QRHRATILECVKDL--DASIRKRALELVYLLVNESNV---KPLTKELIDYLEISD------------QEF 343 (812)
Q Consensus 286 ~p~~v-----~~h~~~i~~cL~d~--D~sIr~~aLell~~l~n~~Nv---~~Iv~eLl~yl~~~d------------~~~ 343 (812)
.+... ..+-..++.++-+. ...+|+.|++.+-.+...+-- ..|+.++-+|+...+ ...
T Consensus 193 ~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~~~s~~~~~~~~~ 272 (339)
T PF12074_consen 193 HPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSSSETGDKESSAENSSDKN 272 (339)
T ss_pred chhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhccccccccccccccccc
Q ss_pred HHHHHHHHHHHHhhhCC-------chhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCC
Q 045023 344 KGDLTAKICSMVEKFSP-------DKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNAS 396 (812)
Q Consensus 344 ~~~li~~I~~la~k~~~-------~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p 396 (812)
..-+.+.|+.....+.. .....++.+ ++....-......|..+++-..-+|
T Consensus 273 ~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~lL--vla~hp~i~~~~~Wi~L~~~~~lDP 330 (339)
T PF12074_consen 273 LSPVLSAICLAPADLSISDGSSADLESQLVSLL--VLAHHPLIPRKNLWIDLCQRAGLDP 330 (339)
T ss_pred cccchHHHHhhhHhhhccccchhHHHHHHHHHH--HHhCcHhhcccchHHHHHHHcCCCH
No 222
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=28.82 E-value=8.1e+02 Score=26.90 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHH
Q 045023 236 LYECVETIMSI--EDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRAL 313 (812)
Q Consensus 236 l~e~v~~i~~i--~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aL 313 (812)
++||+..++.= ..-|+.|......|..+ .-.+...+..-.++.++.....++-.+++++..|...+|
T Consensus 118 vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i-----------~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L 186 (319)
T PF08767_consen 118 VFECTLPMINKDFEEYPEHRVNFFKLLRAI-----------NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGL 186 (319)
T ss_dssp HHHHHHHHHSSTSSSSHHHHHHHHHHHHHH-----------HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhChHHHHHHHHHHHHH-----------HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 45666665542 23466666554444333 333445556667777887778888889999999999999
Q ss_pred HHHHHhcC
Q 045023 314 ELVYLLVN 321 (812)
Q Consensus 314 ell~~l~n 321 (812)
+++..+.+
T Consensus 187 ~~l~~ll~ 194 (319)
T PF08767_consen 187 NILLELLN 194 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877654
No 223
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=28.16 E-value=3.7e+02 Score=33.66 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=87.1
Q ss_pred CCCcchHHHHHHHHHHhcCC--ChhHHHHH---HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccc
Q 045023 229 KNAGNAILYECVETIMSIED--NGGLRVLA---INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 303 (812)
Q Consensus 229 kn~~~aVl~e~v~~i~~i~~--~~~L~~l~---i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d 303 (812)
++++--|+.-+..++-.|.. ....+..+ .+.+..-+..+..++|-+++..+-.++...+ +......|...+++
T Consensus 305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--l~~~~~~I~e~lk~ 382 (815)
T KOG1820|consen 305 KDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--LSKMSEAILEALKG 382 (815)
T ss_pred cCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHhcC
Confidence 34555566555555544421 11122223 3333334566788999999999998887543 34445667888999
Q ss_pred cCHhHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCC
Q 045023 304 LDASIRKRALELVYLLVN--------ESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSP 360 (812)
Q Consensus 304 ~D~sIr~~aLell~~l~n--------~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~ 360 (812)
..+.+|.+...++-...- ..-++.+++.+.....+.|.++|......++.+...+..
T Consensus 383 knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 383 KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 999999987766654432 334777888888888888999999888888887766553
No 224
>COG1470 Predicted membrane protein [Function unknown]
Probab=27.56 E-value=4e+02 Score=30.83 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=46.4
Q ss_pred eEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEeCC
Q 045023 720 TTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTNSQ 778 (812)
Q Consensus 720 ~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n~~ 778 (812)
...+.+...|.+..|++|+.+.+--|-.|.++..|-.=..|.|+... +-.+.|+-|.
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~--tV~ltI~vP~ 454 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESK--TVSLTITVPE 454 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcc--eEEEEEEcCC
Confidence 36688889999999999999999999999999999666668888877 4455555444
No 225
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.16 E-value=6.2e+02 Score=30.87 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=43.1
Q ss_pred HHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccc
Q 045023 351 ICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIE 415 (812)
Q Consensus 351 I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~ 415 (812)
+..+..+|.++.+|+++++..+...-..--.+-+...+-.++..||++....+..++. +..+..
T Consensus 573 ~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~-~R~dls 636 (667)
T KOG2286|consen 573 LYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILK-IRGDLS 636 (667)
T ss_pred HHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHH-HhcCCC
Confidence 3445667888999999999888776543323444445555778899998877777654 443444
No 226
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.68 E-value=7.1e+02 Score=30.52 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH----HHH-HhHhhhccccc-ccCHhHHHHHHHHHHHhc
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQ----AVQ-RHRATILECVK-DLDASIRKRALELVYLLV 320 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~----~v~-~h~~~i~~cL~-d~D~sIr~~aLell~~l~ 320 (812)
...|-.++. .+..|.-+|..|..+++.+|. +++ +-...++.||. |.++.+-..||-+|..|.
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 345555554 568999999999999998763 232 23456788887 888888888888777653
No 227
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.55 E-value=5.1e+02 Score=30.96 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHH
Q 045023 468 DITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQ 510 (812)
Q Consensus 468 ~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqq 510 (812)
+..+...-+-.+.++....|+.+..|..++-...-..|.|||-
T Consensus 177 ~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~iDVeiq~ 219 (563)
T PF05327_consen 177 SKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIKIDVEIQI 219 (563)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444445556677777777887777766554443344444444
No 228
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=1.5e+03 Score=28.80 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 045023 233 NAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD 286 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~ 286 (812)
...+-+|+++|+.-+-.+..-. .+..+..+|.+.+.|.-|.||-+|..++..+
T Consensus 106 Rvql~~~l~~Ii~~D~p~~Wp~-l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 106 RVQLTACLNTIIKADYPEQWPG-LLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHHHHHHHHHHhcCCcccchh-HHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 4567799999998665533322 3567788899999999999999999998764
No 229
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=24.86 E-value=1.3e+03 Score=27.96 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=94.8
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH----HHHH-HhHhhhcccccccCHhHHHHHHHHHHHhc-CCCCHHH--
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDA----QAVQ-RHRATILECVKDLDASIRKRALELVYLLV-NESNVKP-- 327 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p----~~v~-~h~~~i~~cL~d~D~sIr~~aLell~~l~-n~~Nv~~-- 327 (812)
++..|..+|...+.-|+-.+|..|..+|.... .++. ...+.+...+.+.|.+.|..++..|+.+. |.++...
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~ 499 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQ 499 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHH
Confidence 45666777777777788899999999887542 2222 34566777888999999999999998764 4433222
Q ss_pred HH-----HHHHHHhhhcCHHHHHHHHHHHHHHHhh------h-CCchhHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHh
Q 045023 328 LT-----KELIDYLEISDQEFKGDLTAKICSMVEK------F-SPDKIWYIDQMLKVLSEAG-NFVKDEVWHALIVVISN 394 (812)
Q Consensus 328 Iv-----~eLl~yl~~~d~~~~~~li~~I~~la~k------~-~~~~~w~vd~ll~lL~~~g-~~v~~e~i~~i~~li~~ 394 (812)
.. .-+..|..+.|.++.+.+..-+..+.-. | -....-.+|.+...++.++ ..+..|.......++.-
T Consensus 500 ~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~ 579 (678)
T KOG1293|consen 500 LLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNP 579 (678)
T ss_pred HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccc
Confidence 11 2334455556667776666655554321 0 0112223333433444443 33444444333333332
Q ss_pred CCCcHHHHHHHHHHHHh---h-------ccchHHHHHHHHHhhh
Q 045023 395 ASDLHGYTVRALYRAVQ---T-------SIEQESLVRVAIWCIG 428 (812)
Q Consensus 395 ~p~l~~~~v~~L~~~l~---~-------~~~~~~l~~~~~WiiG 428 (812)
+.-.+..+....+..+. + -...+.+...++|.|-
T Consensus 580 ~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~ii 623 (678)
T KOG1293|consen 580 LDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEII 623 (678)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 22223333333333221 0 1234557778888774
No 230
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=2e+02 Score=35.01 Aligned_cols=119 Identities=17% Similarity=0.119 Sum_probs=75.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHH-HHhh
Q 045023 35 AAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNS-LKQD 113 (812)
Q Consensus 35 a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Ns-l~kD 113 (812)
.++++.=.+...++-.|++.-=|.+.+.|..-.+ -.-|-+++.+++.-.|+-|-+.+.+-....+..- ++-. |.--
T Consensus 487 edm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~A-d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk--air~lLh~a 563 (929)
T KOG2062|consen 487 EDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDA-DPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK--AIRRLLHVA 563 (929)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhh-HHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh--hHHHhhccc
Confidence 3466666666777778888888888888864321 1223346778888888888777665332221110 1111 2223
Q ss_pred cCCCCHhHHHHHHHHHhccCc--hhhHHHHHHHHHHhc-cCCCcceeccC
Q 045023 114 LNHTNQYIVGLALCALGNICS--AEMARDLAPEVERLL-QFRDPNIRKKP 160 (812)
Q Consensus 114 L~s~n~~i~~lAL~~Ls~I~~--~e~~~~l~~~V~~ll-~~~~pyVRKkA 160 (812)
.++.|.-||-.|..+||-++. |+.+ |.+..+| .|-||+||=-|
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~----~s~V~lLses~N~HVRyGa 609 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQL----PSTVSLLSESYNPHVRYGA 609 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhc----hHHHHHHhhhcChhhhhhH
Confidence 578889999999999998754 5444 3444455 46789999776
No 231
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=24.75 E-value=4.8e+02 Score=23.19 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=43.4
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhhhC----CchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh
Q 045023 335 YLEISDQEFKGDLTAKICSMVEKFS----PDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN 394 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k~~----~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~ 394 (812)
|+...+ +-+.+++..+-..+..+. ....+|+.++-+++..+.+|+..|+- ++-+++.+
T Consensus 11 f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~-RL~~iL~~ 72 (93)
T cd00238 11 FVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELA-RLERLLEK 72 (93)
T ss_pred Hhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHH-HHHHHHhc
Confidence 444333 557888888887777664 45678999999988888889988854 88888876
No 232
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=24.73 E-value=9.9e+02 Score=26.54 Aligned_cols=176 Identities=10% Similarity=0.085 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhhcCHHHHH--------HHHHHHHHHHhhhCCchhHHHHH----HHHHHhhcCccchHHHHHHHHHHH
Q 045023 325 VKPLTKELIDYLEISDQEFKG--------DLTAKICSMVEKFSPDKIWYIDQ----MLKVLSEAGNFVKDEVWHALIVVI 392 (812)
Q Consensus 325 v~~Iv~eLl~yl~~~d~~~~~--------~li~~I~~la~k~~~~~~w~vd~----ll~lL~~~g~~v~~e~i~~i~~li 392 (812)
..+=+.||-.|+...+++.-. +....|...|.-.+...+|-++. +..++......=..+.+..++.-+
T Consensus 14 ~~~Ql~elr~yl~~~eaeis~e~~~kgl~~~l~~ii~~c~v~~k~~ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekv 93 (378)
T KOG2753|consen 14 FEEQLAELRAYLKKLEAEISEEASEKGLEEDLLMIIEACDVLAKIPEKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKV 93 (378)
T ss_pred HHHHHHHHHHHHhhcCcccchhhhccCHHHHHHHHHHHhHHhhcCCcchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHH
Confidence 344567888888765444332 22223333333333344444444 444444444222233444444444
Q ss_pred HhCC-----CcHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccC
Q 045023 393 SNAS-----DLHGYTVRALYRAVQTSI-EQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHS 466 (812)
Q Consensus 393 ~~~p-----~l~~~~v~~L~~~l~~~~-~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~ 466 (812)
...| .++-.++..||....... ....+....+=+.-+|+-. .. +. -=++.+...++.-.
T Consensus 94 a~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~-~~---i~-----------~~lk~~~~~lkew~ 158 (378)
T KOG2753|consen 94 AKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLI-EY---IV-----------PNLKQLDDWLKEWN 158 (378)
T ss_pred hcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhccee-ee---ec-----------ccHHHHHHHHHhCC
Confidence 3333 344455555555444221 1112222223333333211 10 00 01255666676656
Q ss_pred CCHHHHHHHHHHHHHHHccCCC---ChHHHHHHHHHhhCCCChHHHHHHHHH
Q 045023 467 SDITTKAMAMVALLKLSSRFPS---CSERIRDIIVQNKGSLVLELQQRSIEF 515 (812)
Q Consensus 467 ~~~~vk~~iLtAl~KL~~r~p~---~~~~i~~ll~~~~~s~~~evqqRA~ey 515 (812)
.+.+-+..++-++.|...-... ....+..+|..|+.+.-.+-|+-|.++
T Consensus 159 ~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rc 210 (378)
T KOG2753|consen 159 ISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRC 210 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 6778888888888887765542 234566788888887645555544444
No 233
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.51 E-value=4.5e+02 Score=31.17 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=35.5
Q ss_pred hhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHH-HHHhccCCCc
Q 045023 76 SIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPE-VERLLQFRDP 154 (812)
Q Consensus 76 li~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~-V~~ll~~~~p 154 (812)
++.+.+-..|--|-+.+.+-+-..+.+-+ +--.+.--.++.|.-||-.|.++||-+|-.+ +++.+. |+-+..+.|+
T Consensus 524 ll~d~ds~lRy~G~fs~alAy~GTgn~~v-v~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~tvelLs~shN~ 600 (926)
T COG5116 524 LLYDKDSILRYNGVFSLALAYVGTGNLGV-VSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVGTVELLSESHNF 600 (926)
T ss_pred HhcCchHHhhhccHHHHHHHHhcCCcchh-HhhhheeecccCchHHHHHHHHheeeeEecC--cchhhHHHHHhhhccch
Confidence 44555555555555444442222222211 1111222345566666666666666655443 122222 3333334556
Q ss_pred ceecc
Q 045023 155 NIRKK 159 (812)
Q Consensus 155 yVRKk 159 (812)
+||--
T Consensus 601 hVR~g 605 (926)
T COG5116 601 HVRAG 605 (926)
T ss_pred hhhhh
Confidence 66643
No 234
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=24.45 E-value=4.1e+02 Score=33.29 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH-HHHH----hHhhhcccccccCHhHHHHHHHHHHHhcCCCC------H
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQ-AVQR----HRATILECVKDLDASIRKRALELVYLLVNESN------V 325 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~-~v~~----h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N------v 325 (812)
+.+|.+.+..-+.-.|..-|..|.+++..-|. .+-+ -..-+++||.-+|+.+|..+++.+--+..+.- +
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~ 948 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL 948 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH
Confidence 34444445556778888899999998876663 2223 23457789999999999999998877665543 5
Q ss_pred HHHHHHHHHHhhhcC---HHHHHHHHHHHHHHHhhhCC
Q 045023 326 KPLTKELIDYLEISD---QEFKGDLTAKICSMVEKFSP 360 (812)
Q Consensus 326 ~~Iv~eLl~yl~~~d---~~~~~~li~~I~~la~k~~~ 360 (812)
.++|+-++.--...| ...|..++..+..+.++-|+
T Consensus 949 ~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 949 STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT 986 (1030)
T ss_pred hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence 556655555433333 34677777777777775554
No 235
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.30 E-value=1.4e+02 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=15.8
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la 355 (812)
++-|...+...|.+++++++.+++.++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344555555566666666666666554
No 236
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.22 E-value=2.7e+02 Score=23.20 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=29.2
Q ss_pred CeEEEEEEEEeCCCccccceEEEEeecCceeEe
Q 045023 719 QTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLH 751 (812)
Q Consensus 719 ~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~ 751 (812)
+.+..++.++|.++.+..|+.++=.+|.++.+.
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~v 73 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTFV 73 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEEe
Confidence 468899999999999999999999999887653
No 237
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.22 E-value=1.6e+02 Score=32.25 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=78.2
Q ss_pred HHHccCChHHHHHHHH---HHHHHHHcCC--CCCChhHHHHHhhccCCCCchhHHHHHHHHhccc-----chhHHHHHHH
Q 045023 39 AAINENDQDYRHRNLA---KLMFIHMLGY--PTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDE-----RQEVLMLVTN 108 (812)
Q Consensus 39 ~~l~~~~~~~r~~~l~---KLiyl~~lG~--~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~-----~~el~~L~~N 108 (812)
+.+.+.+-..+++++. +|.-.|--+- ..+.--+-|++-+.+.+-..=|.....+.-++.. .+++-.+++-
T Consensus 95 ~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344545555665443 4444443221 2234444455555566666666666665554322 2355556665
Q ss_pred HHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-CCchhHHHH
Q 045023 109 SLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP-KCLDGLVKT 169 (812)
Q Consensus 109 sl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA-~~v~~lv~~ 169 (812)
.+.|--. .|-+||.-|.++|-.+...---.-+.+.+.-++.|.+|.+|.+| .|.+..+..
T Consensus 175 Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 175 LLHKASQ-DNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred HHhhhcc-cchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 5555433 47899998888887776666666778888888999999999988 444444433
No 238
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.11 E-value=1.4e+03 Score=28.18 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=93.2
Q ss_pred hcccccccCHhHHHH-HHHHHHHhcCCCCHHHHHHHHHHH-hhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHh
Q 045023 297 ILECVKDLDASIRKR-ALELVYLLVNESNVKPLTKELIDY-LEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLS 374 (812)
Q Consensus 297 i~~cL~d~D~sIr~~-aLell~~l~n~~Nv~~Iv~eLl~y-l~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~ 374 (812)
|-+.++|.|+.+|.- .+.+..+-|-..|-+ .|+.|+.| +.+.++++|+.++.+|+-++-+ +.+.|..++--+-+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnk-air~lLh~aVsD~nDDVrRaAVialGFVl~~---dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNK-AIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---DPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchh-hHHHhhcccccccchHHHHHHHHHheeeEec---ChhhchHHHHHHhh
Confidence 446788899988886 566666767666654 56677777 5678999999999999987755 55556655543333
Q ss_pred hcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhcc---chHHHHHHHHHhhhhcccccccCccccccCCCCccCh
Q 045023 375 EAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSI---EQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTE 451 (812)
Q Consensus 375 ~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~---~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~ 451 (812)
.-..||+-.+. ..+.|.+....+++ ++ .|++-+-.+. .-+.++.+.+.|+-.-.+.+. ++ -
T Consensus 600 s~N~HVRyGaA-~ALGIaCAGtG~~e-Ai-~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~--pk-----------v 663 (929)
T KOG2062|consen 600 SYNPHVRYGAA-MALGIACAGTGLKE-AI-NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC--PK-----------V 663 (929)
T ss_pred hcChhhhhhHH-HHHhhhhcCCCcHH-HH-HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC--ch-----------H
Confidence 44557777666 33445554455543 33 3444444321 223444444555544443321 11 1
Q ss_pred hhHHHHHHHHHhccCCCHHHHHHHH
Q 045023 452 SDAVDVVEIAIKHHSSDITTKAMAM 476 (812)
Q Consensus 452 ~~vi~~l~~~l~~~~~~~~vk~~iL 476 (812)
..+.+.|.+++....++..+|.-.+
T Consensus 664 ~~frk~l~kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 664 NGFRKQLEKVINDKHEDGMAKFGAI 688 (929)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3456667777765545545444333
No 239
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.06 E-value=1.5e+02 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=19.1
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHH
Q 045023 121 IVGLALCALGNICSAEMARDLAPEV 145 (812)
Q Consensus 121 i~~lAL~~Ls~I~~~e~~~~l~~~V 145 (812)
||.-|..+||.|+.++-++.|...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 5788999999999988777766554
No 240
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=24.03 E-value=2.1e+02 Score=27.40 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHccCCCC----hHHHHHHHHHhhCCCChHHHHHHHHHHHHhccCHHHHHH
Q 045023 468 DITTKAMAMVALLKLSSRFPSC----SERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRST 528 (812)
Q Consensus 468 ~~~vk~~iLtAl~KL~~r~p~~----~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ 528 (812)
.......+|..+.+.+.|.|+. -....+++..+.++.+.+++++|.+.+.---+.+.++.-
T Consensus 66 ~~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~~Vkp~ 130 (135)
T PF13981_consen 66 KDKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQLPRVKPY 130 (135)
T ss_dssp -HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCSTTTHHH
T ss_pred ccccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcChhhhhh
Confidence 3556678999999999999984 456778888889888999999999855544366666654
No 241
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.79 E-value=2.4e+02 Score=28.47 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=11.4
Q ss_pred HhhcCCCcchHHHHHHHHHH
Q 045023 262 RFLSNRDNNIRYVALNMLMK 281 (812)
Q Consensus 262 ~fL~~~d~niryvaL~~L~~ 281 (812)
.+..+...+.||+|+..+..
T Consensus 58 ~L~~~~~~E~~~la~~il~~ 77 (213)
T PF08713_consen 58 ELWESGYREERYLALLILDK 77 (213)
T ss_dssp HHHCSSCHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHhHH
Confidence 34455556666666665544
No 242
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.66 E-value=1.3e+03 Score=28.39 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHhhC-CCChHHHHHHHHHHHHhccCHHHHHHhhhcCC
Q 045023 489 CSERIRDIIVQNKG-SLVLELQQRSIEFNSIVEKHQNIRSTLVERMP 534 (812)
Q Consensus 489 ~~~~i~~ll~~~~~-s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~mP 534 (812)
..+.|.++...+.+ .... .+-|.++....++ .++..=+...|
T Consensus 483 lk~~i~eiq~~a~~a~~s~-~~pR~rFmleti~---aLKnN~~kki~ 525 (822)
T KOG2141|consen 483 LKDIITEIQSKAASAKISA-ISPRLRFMLETIS---ALKNNKLKKIP 525 (822)
T ss_pred HHHHHHHHHHHhhcCCccc-cchHHHHHHHHHH---HHhcCCCcCCC
Confidence 34555555555554 3333 6888888776663 44444344444
No 243
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.59 E-value=3.8e+02 Score=23.30 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC----CChHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 045023 451 ESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP----SCSERIRDIIVQNKGSLVLELQQRSIEFNSI 518 (812)
Q Consensus 451 ~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p----~~~~~i~~ll~~~~~s~~~evqqRA~ey~~L 518 (812)
.++++.-|+.++.+ ..+.++|..+|.++..+..... +.-..|..++.....+.+.++-..|++..++
T Consensus 15 Q~~fL~Pf~~i~~~-~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 15 QKDFLKPFEYIMSN-NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 35677777777643 3578999999999999987553 2346788899999999899999999887654
No 244
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=23.49 E-value=3.6e+02 Score=26.05 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=43.5
Q ss_pred CeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEEEe
Q 045023 719 QTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRVTN 776 (812)
Q Consensus 719 ~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i~n 776 (812)
--+.+.+...|.+..++.|+.++.|.--.+||-=.|+. -+|+|++...+.=.++|.-
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~-~tL~P~~~~~i~~~iKVsS 125 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQP-ITLAPHGFARIKATIKVSS 125 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCc-eeeCCCcEEEEEEEEEEEe
Confidence 34788899999999999999999999888888777764 4489887554444444443
No 245
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.33 E-value=5.2e+02 Score=31.93 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCHHHHHHh------HhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHH
Q 045023 276 LNMLMKAITVDAQAVQRH------RATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTA 349 (812)
Q Consensus 276 L~~L~~l~~~~p~~v~~h------~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~ 349 (812)
-+.|.++...+|+.+..- ..-|+.|+-+++..|+.-|+++++...+++.-.+-+.+|++.--..--.=-...+.
T Consensus 502 ~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~ 581 (727)
T PF12726_consen 502 SQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLR 581 (727)
T ss_pred HHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444555555443321 13477899999999999999999999999999999998887432211111122222
Q ss_pred HHHHHHhhhCCchhHHHHHHHHHHh
Q 045023 350 KICSMVEKFSPDKIWYIDQMLKVLS 374 (812)
Q Consensus 350 ~I~~la~k~~~~~~w~vd~ll~lL~ 374 (812)
.+..+. .|.|..+ .|.++.++++
T Consensus 582 ~~~~~~-~~~p~pr-~vr~~~DIi~ 604 (727)
T PF12726_consen 582 QLTKLK-FFEPCPR-MVRCLMDIIE 604 (727)
T ss_pred HHHhhh-hhcchHH-HHHHHHHHHH
Confidence 232222 2677666 6666665554
No 246
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.21 E-value=3.5e+02 Score=33.59 Aligned_cols=94 Identities=9% Similarity=0.059 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHH
Q 045023 307 SIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWH 386 (812)
Q Consensus 307 sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~ 386 (812)
+|+.|.+.+=|.-...+.+...+ ...+.....++-.+.+..|...+. -+.+-.+..+.+.+...++.++.+.+.
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L---~~Il~~EgI~id~eAL~lIA~~A~---GsmRdALsLLdQAia~~~~~It~~~V~ 238 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHL---ERILGEERIAFEPQALRLLARAAQ---GSMRDALSLTDQAIAYSANEVTETAVS 238 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHH---HHHHHHcCCCCCHHHHHHHHHHcC---CCHHHHHHHHHHHHHhccCCcCHHHHH
Confidence 55666554444433333333333 333333334455666666665553 355556666666666666667777666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhh
Q 045023 387 ALIVVISNASDLHGYTVRALYRAVQT 412 (812)
Q Consensus 387 ~i~~li~~~p~l~~~~v~~L~~~l~~ 412 (812)
.++.++. +. .+..+++.+.+
T Consensus 239 ~~LG~~d-----~~-~i~~ll~aL~~ 258 (830)
T PRK07003 239 GMLGALD-----QT-YMVRLLDALAA 258 (830)
T ss_pred HHhCCCC-----HH-HHHHHHHHHHc
Confidence 5554321 12 25566666664
No 247
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.74 E-value=3.1e+02 Score=27.02 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC-ChhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 045023 214 MNDILAQVATKTESNKNAGNAILYECVETIMSIED-NGGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAI 283 (812)
Q Consensus 214 l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~-~~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~ 283 (812)
+.++|.++..+.... .....+.++|++|+-.+-. ..++.. -+++.|...|.+.+..+|-.+++.|..++
T Consensus 112 L~~~L~~~~~~~~~~-~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 112 LLNVLSKLNKKKEKS-EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHTHHCTC-TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhc-chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 444555444332111 2334677888888766432 233221 24677888888899999999999887664
No 248
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=22.65 E-value=1.2e+03 Score=26.86 Aligned_cols=48 Identities=25% Similarity=0.117 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHccC-C-CChHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 472 KAMAMVALLKLSSRF-P-SCSERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 472 k~~iLtAl~KL~~r~-p-~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
+-....|.+=++.+. | ...+.|+.+.+.-++..|.++|+||.+...-|
T Consensus 291 ~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 291 RVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 333333444444333 5 46688999999999999999999999987765
No 249
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.36 E-value=4.5e+02 Score=25.98 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcC--CCcchHHHHHHHHHHHHhhCHHH---HHHhH--hhhcccccccCHhHHHHHHHHHHHhc
Q 045023 254 VLAINILGRFLSN--RDNNIRYVALNMLMKAITVDAQA---VQRHR--ATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 254 ~l~i~~L~~fL~~--~d~niryvaL~~L~~l~~~~p~~---v~~h~--~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
..++..+..++.. .|.++.-.+|..|-.++...+.. |.+.. ..++.+|.+.|..|...|+-|+-+|.
T Consensus 57 ~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 57 DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456666666644 37999999999999999988764 33322 44677888999999999999887763
No 250
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.19 E-value=9.6e+02 Score=25.48 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=0.0
Q ss_pred HhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh--------cCHHHHHHHHHHHHHHHhhhCCchhHH
Q 045023 294 RATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEI--------SDQEFKGDLTAKICSMVEKFSPDKIWY 365 (812)
Q Consensus 294 ~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~--------~d~~~~~~li~~I~~la~k~~~~~~w~ 365 (812)
...|+.-|...+-..=+.||+-... +..+++++|+..++. .+.+=..-.+.+++.+|+.=... .
T Consensus 3 ~~~il~~l~~~~~~~P~~al~~A~~-----~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~---A 74 (249)
T PF06685_consen 3 IEEILEQLSYNDGEFPREALEAAIE-----QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREER---A 74 (249)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHH-----CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhh---h
Q ss_pred HHHHHHHHhhcCcc--------chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccC
Q 045023 366 IDQMLKVLSEAGNF--------VKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNN 437 (812)
Q Consensus 366 vd~ll~lL~~~g~~--------v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~ 437 (812)
++.+++++...+.+ +.++....+..+..+. +..|.+++.+....+-++.+++=.++.-...-.
T Consensus 75 ~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~-------~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~-- 145 (249)
T PF06685_consen 75 LPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGD-------IEPLKELIEDPDADEYVRMAAISALAFLVHEGP-- 145 (249)
T ss_pred HHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCC-------HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC--
Q ss_pred ccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHH
Q 045023 438 VGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIV 498 (812)
Q Consensus 438 ~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~ 498 (812)
++-++++++|..++.........-.+..-...=+-.+-.+..+.|++++.
T Consensus 146 -----------~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 146 -----------ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFE 195 (249)
T ss_pred -----------CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHH
No 251
>PF15573 Imm27: Immunity protein 27
Probab=21.94 E-value=9.2e+02 Score=25.17 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHHHhHhhhcccccc-cCHhHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQRHRATILECVKD-LDASIR 309 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~~h~~~i~~cL~d-~D~sIr 309 (812)
..+|+-=|+|.++.+.....|+. +|-| +||++-.. .+..++..=+-. =.--|-+|.-.+++=-.| .|..+-
T Consensus 60 DE~vLNLCiRlFcSV~THdDL~~--~nNl-~FLs~asE----~~v~TF~s~A~~tlSyeVIPYLLaLleeWed~td~~~~ 132 (259)
T PF15573_consen 60 DEAVLNLCIRLFCSVATHDDLRD--SNNL-RFLSSASE----FGVFTFASGAITTLSYEVIPYLLALLEEWEDITDTEIA 132 (259)
T ss_pred hHHHHHHHHHHHHhhcchHhhhc--ccce-ehHhhhhH----HHHHHHHHHhhccchhhHHHHHHHHHHHHhccchHHHH
Confidence 56899999999999887777754 1222 34432110 011111100000 001134454444433333 454333
Q ss_pred -HHHHHHHHH----hcCCCCHHHHHHHHHHHhhhcC-------------HHHHHHHHHHHHHHHhh
Q 045023 310 -KRALELVYL----LVNESNVKPLTKELIDYLEISD-------------QEFKGDLTAKICSMVEK 357 (812)
Q Consensus 310 -~~aLell~~----l~n~~Nv~~Iv~eLl~yl~~~d-------------~~~~~~li~~I~~la~k 357 (812)
|-+|+.... +..+..+.+|=+--++|++.+| .++.++++.++...|.+
T Consensus 133 Irdsld~fln~~~~~~e~atieEig~~Y~d~~~~~d~~~YYy~~~laFpGdLtk~l~~rv~iAa~~ 198 (259)
T PF15573_consen 133 IRDSLDSFLNYRDIIGEEATIEEIGEYYFDYVKNKDTDCYYYQQNLAFPGDLTKELMQRVMIAANK 198 (259)
T ss_pred HHHHHHHHhhHHHHhcccCcHHHHHHHHHHHHHccCccceehhcCCCCchHHHHHHHHHHHHHhcc
Confidence 346666543 3355556666555566666554 35777777777777754
No 252
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.76 E-value=3.3e+02 Score=26.18 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccc
Q 045023 258 NILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKD 303 (812)
Q Consensus 258 ~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d 303 (812)
+.+..+|.++|++++-.||++|... .+| .+.+|++.+...++|
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~--k~~-~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTW--KDP-YLTPYKDNLENLLDD 62 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh--CcH-HHHhHHHHHHHHcCc
Confidence 4556778888888888888887543 222 566676665554443
No 253
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=21.05 E-value=3.9e+02 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=18.9
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcC
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVN 321 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n 321 (812)
..+..=|.| +..||..+..++.+++.
T Consensus 69 ~~v~~GL~D-~~DIk~L~~~~l~kl~~ 94 (169)
T PF08623_consen 69 DRVEAGLKD-EHDIKMLCHLMLSKLAQ 94 (169)
T ss_dssp HHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence 345566777 88999999999888853
No 254
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.96 E-value=4.8e+02 Score=32.11 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh--CCCcHH--HHHHHHHHHHhhccchHHHHHHH
Q 045023 348 TAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN--ASDLHG--YTVRALYRAVQTSIEQESLVRVA 423 (812)
Q Consensus 348 i~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~--~p~l~~--~~v~~L~~~l~~~~~~~~l~~~~ 423 (812)
+.++..++..-|--.--++++|+.+.+..|..-.-.++..+.+++.+ -|+ |. |..++=+..|....... +..+
T Consensus 214 itA~~LlvqesPvh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPd-RKLk~f~qrp~~~l~~~~~~~--k~Ll 290 (988)
T KOG2038|consen 214 ITAMTLLVQESPVHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPD-RKLKYFSQRPLLELTNKRLRD--KILL 290 (988)
T ss_pred hHHHHHhhcccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcc-hhhHHHhhChhhhcccccccc--ceeh
Q ss_pred HHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCC
Q 045023 424 IWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGS 503 (812)
Q Consensus 424 ~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s 503 (812)
+|-.-.|-..+- ..+|..|+.+...+. ..||..+|+.+.-|.+.-|+....+...+-....+
T Consensus 291 ~WyfE~~LK~ly----------------~rfievLe~lS~D~L--~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGD 352 (988)
T KOG2038|consen 291 MWYFEHELKILY----------------FRFIEVLEELSKDPL--EEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGD 352 (988)
T ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHccccH--HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCC
Q ss_pred CChHHHHHHHHHHHHhc-cCHHHHHHhhhcC
Q 045023 504 LVLELQQRSIEFNSIVE-KHQNIRSTLVERM 533 (812)
Q Consensus 504 ~~~evqqRA~ey~~Ll~-~~~~~~~~ll~~m 533 (812)
.+.-|-..|...+.=|. .||.++-.|.+.+
T Consensus 353 pqnKiaskAsylL~~L~~~HPnMK~Vvi~EI 383 (988)
T KOG2038|consen 353 PQNKIASKASYLLEGLLAKHPNMKIVVIDEI 383 (988)
T ss_pred cchhhhhhHHHHHHHHHhhCCcceeehHHHH
No 255
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.93 E-value=3.1e+02 Score=26.95 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHhhCHHHHHHhHhhhc
Q 045023 269 NNIRYVALNMLMKAITVDAQAVQRHRATIL 298 (812)
Q Consensus 269 ~niryvaL~~L~~l~~~~p~~v~~h~~~i~ 298 (812)
....-.+|+.|..++..+|..+.+|...|-
T Consensus 128 ~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~ 157 (165)
T PF08167_consen 128 SSCPETALDALATLLPHHPTTFRPFANKIE 157 (165)
T ss_pred cccHHHHHHHHHHHHHHCCccccchHHHHH
Confidence 577889999999999999999998877654
No 256
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.64 E-value=1.4e+02 Score=21.62 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAI 283 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~ 283 (812)
++..|..+|.+.+..++.-++..|..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5667777777888888888877776654
No 257
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=1.3e+03 Score=27.42 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC--ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHH
Q 045023 342 EFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG--NFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESL 419 (812)
Q Consensus 342 ~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g--~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l 419 (812)
+||..+...+..++--... .-++..+...+.... -...+.+...+..++.+.+.-...++....+.+..-..+..+
T Consensus 367 ~fR~~v~dvl~Dv~~iigs--~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~ 444 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGS--DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPL 444 (559)
T ss_pred HHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhH
Confidence 3555555555544432222 234554444444411 123344444444444444433344555666666644456668
Q ss_pred HHHHHHhhhhcccccccCc
Q 045023 420 VRVAIWCIGEYGDMLVNNV 438 (812)
Q Consensus 420 ~~~~~WiiGEY~~~l~~~~ 438 (812)
+...+-.+|||.+.+...+
T Consensus 445 ~~ts~ll~g~~~ew~~~~p 463 (559)
T KOG2081|consen 445 RYTSILLLGEYSEWVEQHP 463 (559)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 9999999999999886544
Done!