Query 045023
Match_columns 812
No_of_seqs 320 out of 1486
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 1.1E-93 3.7E-98 849.0 43.4 522 5-539 10-608 (621)
2 1w63_A Adapter-related protein 100.0 4.8E-92 1.6E-96 836.2 54.2 531 8-540 10-596 (618)
3 2vgl_B AP-2 complex subunit be 100.0 2.5E-68 8.6E-73 629.8 37.8 483 31-539 12-551 (591)
4 3tjz_B Coatomer subunit gamma; 100.0 3.3E-46 1.1E-50 408.2 4.3 277 39-322 32-354 (355)
5 1iu1_A Gamma1-adaptin; coated 100.0 4E-32 1.4E-36 259.5 15.0 137 673-812 8-144 (146)
6 3zy7_A AP-1 complex subunit ga 100.0 6.9E-32 2.4E-36 250.4 15.6 115 695-811 5-119 (122)
7 2e9g_A AP-1 complex subunit ga 100.0 3.9E-31 1.3E-35 248.7 16.7 117 694-812 13-129 (131)
8 1gyu_A Adapter-related protein 100.0 6E-31 2E-35 249.3 16.1 117 694-812 22-138 (140)
9 3mnm_A ADP-ribosylation factor 100.0 1.9E-29 6.4E-34 234.0 16.9 113 695-810 9-122 (123)
10 1p4u_A ADP-ribosylation factor 100.0 3.6E-29 1.2E-33 240.5 17.0 115 694-810 26-146 (153)
11 1b3u_A Protein (protein phosph 99.2 8.2E-10 2.8E-14 128.3 26.2 412 76-519 134-585 (588)
12 2vgl_B AP-2 complex subunit be 99.2 4.9E-10 1.7E-14 131.8 23.8 419 71-534 16-474 (591)
13 4fdd_A Transportin-1; heat rep 99.1 1.6E-07 5.5E-12 114.9 37.9 475 23-519 84-656 (852)
14 1b3u_A Protein (protein phosph 99.1 1.2E-08 4.1E-13 118.4 24.9 378 110-519 92-507 (588)
15 4fdd_A Transportin-1; heat rep 99.1 9.3E-08 3.2E-12 117.0 34.0 391 42-486 23-473 (852)
16 1w63_A Adapter-related protein 99.0 7.3E-09 2.5E-13 122.5 21.8 382 34-433 109-541 (618)
17 2z6g_A B-catenin; FULL-length, 98.9 7.2E-08 2.5E-12 117.0 25.2 397 107-531 117-632 (780)
18 2jdq_A Importin alpha-1 subuni 98.9 2.2E-07 7.7E-12 104.0 26.9 314 34-356 22-390 (450)
19 1wa5_B Importin alpha subunit; 98.9 1.1E-07 3.7E-12 109.9 21.8 330 68-433 87-458 (530)
20 2bpt_A Importin beta-1 subunit 98.8 1.7E-05 5.8E-10 96.3 41.7 476 24-518 90-665 (861)
21 2jdq_A Importin alpha-1 subuni 98.8 2.8E-07 9.5E-12 103.3 23.6 309 70-394 22-391 (450)
22 2bpt_A Importin beta-1 subunit 98.8 1.6E-06 5.4E-11 105.4 31.6 440 33-519 5-527 (861)
23 1oyz_A Hypothetical protein YI 98.8 1.1E-07 3.8E-12 100.2 17.7 230 106-376 24-264 (280)
24 1wa5_B Importin alpha subunit; 98.8 2.3E-07 7.8E-12 107.2 21.8 359 30-433 85-511 (530)
25 4b8j_A Importin subunit alpha- 98.8 4.7E-07 1.6E-11 104.4 23.7 366 107-519 76-495 (528)
26 1qgr_A Protein (importin beta 98.8 3.1E-05 1.1E-09 94.2 40.9 478 24-519 85-677 (876)
27 4b8j_A Importin subunit alpha- 98.7 9.3E-07 3.2E-11 101.9 25.0 360 34-433 76-497 (528)
28 1jdh_A Beta-catenin; beta-cate 98.7 3.6E-06 1.2E-10 96.3 28.1 279 233-518 200-527 (529)
29 2z6h_A Catenin beta-1, beta-ca 98.7 3.6E-06 1.2E-10 99.7 28.6 318 192-521 156-527 (644)
30 2z6g_A B-catenin; FULL-length, 98.7 1.6E-06 5.5E-11 105.2 25.3 427 69-521 151-663 (780)
31 1u6g_C TIP120 protein, CAND1; 98.7 8.6E-06 3E-10 103.6 32.8 467 33-520 7-597 (1230)
32 1jdh_A Beta-catenin; beta-cate 98.6 2E-06 6.9E-11 98.4 23.2 399 106-529 18-497 (529)
33 1qgr_A Protein (importin beta 98.6 2.1E-05 7.1E-10 95.7 33.5 424 80-519 340-869 (876)
34 2z6h_A Catenin beta-1, beta-ca 98.6 5.9E-06 2E-10 97.9 27.6 324 189-529 111-494 (644)
35 3now_A UNC-45 protein, SD10334 98.6 8E-06 2.7E-10 98.2 28.6 388 23-432 237-737 (810)
36 1ibr_B P95, importin beta-1 su 98.5 7E-06 2.4E-10 91.9 22.0 199 232-435 187-440 (462)
37 2vgl_A Adaptor protein complex 98.5 3.2E-06 1.1E-10 99.7 19.6 350 34-396 113-508 (621)
38 1u6g_C TIP120 protein, CAND1; 98.5 9.5E-05 3.3E-09 94.0 33.8 250 257-519 376-677 (1230)
39 3now_A UNC-45 protein, SD10334 98.4 0.00014 4.7E-09 87.5 32.8 286 233-530 393-747 (810)
40 3ul1_B Importin subunit alpha- 98.4 4.5E-05 1.5E-09 87.7 24.9 311 189-517 114-474 (510)
41 3ul1_B Importin subunit alpha- 98.4 0.00051 1.7E-08 78.9 33.5 361 34-432 59-478 (510)
42 1ibr_B P95, importin beta-1 su 98.4 2.9E-05 1E-09 86.7 22.6 367 110-519 6-435 (462)
43 4hxt_A De novo protein OR329; 98.3 9.6E-06 3.3E-10 82.9 16.2 219 257-487 4-244 (252)
44 1oyz_A Hypothetical protein YI 98.3 5E-05 1.7E-09 79.6 21.4 242 188-479 35-277 (280)
45 3tpo_A Importin subunit alpha- 98.2 0.0017 5.9E-08 74.7 34.5 322 34-392 78-448 (529)
46 3ltm_A Alpha-REP4; protein eng 98.2 1.5E-05 5.3E-10 79.8 14.8 185 107-358 21-205 (211)
47 3tpo_A Importin subunit alpha- 98.2 0.00024 8.1E-09 82.0 25.7 362 107-516 78-492 (529)
48 4hxt_A De novo protein OR329; 98.2 2.6E-05 8.8E-10 79.7 15.7 201 232-434 15-243 (252)
49 4db6_A Armadillo repeat protei 98.1 2.9E-05 1E-09 77.5 13.7 175 256-432 13-209 (210)
50 3ltm_A Alpha-REP4; protein eng 98.1 6.6E-05 2.3E-09 75.1 16.3 182 257-520 21-202 (211)
51 4db8_A Armadillo-repeat protei 98.1 0.00026 9.1E-09 72.5 20.4 217 65-320 9-250 (252)
52 4db8_A Armadillo-repeat protei 98.0 4.8E-05 1.6E-09 78.1 14.6 198 232-431 25-250 (252)
53 3ltj_A Alpharep-4; protein eng 98.0 0.00011 3.8E-09 72.9 16.8 179 296-519 18-196 (201)
54 3ltj_A Alpharep-4; protein eng 98.0 8.4E-05 2.9E-09 73.8 15.4 184 256-484 15-198 (201)
55 4db6_A Armadillo repeat protei 97.5 0.0017 5.9E-08 64.3 16.0 126 232-357 25-168 (210)
56 3opb_A SWI5-dependent HO expre 97.5 0.085 2.9E-06 62.7 32.2 448 49-519 148-726 (778)
57 3b2a_A TON_1937, putative unch 97.5 0.00094 3.2E-08 67.4 12.4 190 108-337 36-234 (265)
58 3tjz_B Coatomer subunit gamma; 97.4 0.0014 4.8E-08 71.4 14.4 232 231-482 116-351 (355)
59 1xm9_A Plakophilin 1; armadill 97.3 0.027 9.2E-07 63.5 23.8 321 188-526 14-454 (457)
60 2qk2_A LP04448P; mini spindles 97.2 0.0028 9.7E-08 64.8 13.8 105 256-360 57-166 (242)
61 2db0_A 253AA long hypothetical 97.2 0.0019 6.5E-08 62.6 10.7 106 249-355 138-245 (253)
62 1xm9_A Plakophilin 1; armadill 97.1 0.024 8.3E-07 63.9 21.4 76 452-528 282-367 (457)
63 3l6x_A Catenin delta-1; cateni 96.9 0.16 5.4E-06 58.9 25.4 94 67-160 47-154 (584)
64 3nmw_A APC variant protein; AR 96.8 0.022 7.4E-07 62.1 16.3 242 235-488 48-338 (354)
65 2x19_B Importin-13; nuclear tr 96.8 0.28 9.7E-06 60.2 28.3 57 416-486 502-558 (963)
66 3l6x_A Catenin delta-1; cateni 96.7 1.2 4.1E-05 51.5 30.5 335 188-542 60-495 (584)
67 1xqr_A HSPBP1 protein; armadil 96.7 0.17 5.8E-06 53.6 21.7 139 256-394 82-239 (296)
68 2db0_A 253AA long hypothetical 96.6 0.087 3E-06 51.2 17.0 205 295-517 35-242 (253)
69 3nmz_A APC variant protein; pr 96.6 0.054 1.9E-06 61.1 17.8 241 236-488 165-454 (458)
70 2qk2_A LP04448P; mini spindles 96.5 0.0076 2.6E-07 61.6 9.6 170 261-434 21-207 (242)
71 3hs8_A Adaptor protein complex 96.5 0.024 8.1E-07 59.3 13.0 99 695-801 47-149 (273)
72 1wa5_C Importin alpha RE-expor 96.4 0.32 1.1E-05 59.9 25.2 91 79-175 416-525 (960)
73 1xqr_A HSPBP1 protein; armadil 96.4 0.04 1.4E-06 58.5 14.6 135 296-432 85-238 (296)
74 3nmw_A APC variant protein; AR 96.3 0.071 2.4E-06 58.0 16.3 263 114-399 41-340 (354)
75 1wa5_C Importin alpha RE-expor 96.3 2.8 9.5E-05 51.5 32.5 197 271-484 262-525 (960)
76 2qk1_A Protein STU2; STU2P, XM 96.3 0.022 7.4E-07 58.9 11.4 186 110-331 21-233 (249)
77 2qk1_A Protein STU2; STU2P, XM 96.2 0.027 9.1E-07 58.2 11.7 135 257-391 62-218 (249)
78 1te4_A Conserved protein MTH18 96.2 0.002 6.8E-08 59.4 2.7 102 257-375 14-115 (131)
79 3grl_A General vesicular trans 96.1 0.054 1.8E-06 62.8 14.8 247 256-534 123-408 (651)
80 3b2a_A TON_1937, putative unch 96.1 0.35 1.2E-05 48.9 18.5 212 256-519 34-259 (265)
81 4ady_A RPN2, 26S proteasome re 96.0 1.1 3.9E-05 54.3 26.0 253 108-392 395-675 (963)
82 1kyf_A Alpha-adaptin C; protei 96.0 0.084 2.9E-06 54.4 14.0 100 696-803 22-125 (247)
83 2x1g_F Cadmus; transport prote 95.9 0.27 9.1E-06 60.6 20.7 56 416-486 519-574 (971)
84 3ibv_A Exportin-T; karyopherin 95.3 7.5 0.00026 47.9 30.4 208 289-519 329-564 (980)
85 2x1g_F Cadmus; transport prote 95.0 9.2 0.00032 46.7 35.2 200 307-520 436-662 (971)
86 4ady_A RPN2, 26S proteasome re 94.9 8.7 0.0003 46.7 28.1 231 256-520 430-675 (963)
87 1ho8_A Vacuolar ATP synthase s 94.6 2.6 9E-05 47.1 21.3 334 119-484 77-476 (480)
88 1te4_A Conserved protein MTH18 94.6 0.042 1.4E-06 50.4 5.8 87 257-353 44-130 (131)
89 3opb_A SWI5-dependent HO expre 94.4 0.53 1.8E-05 55.9 16.0 201 231-431 469-730 (778)
90 3nmz_A APC variant protein; pr 94.2 0.65 2.2E-05 52.2 15.5 205 190-397 214-454 (458)
91 3u0r_A Apoptosis inhibitor 5; 94.1 1.7 5.7E-05 48.5 18.0 147 249-418 41-193 (507)
92 3m1i_C Exportin-1; heat repeat 93.9 9 0.00031 47.4 26.8 46 474-519 522-567 (1049)
93 2of3_A ZYG-9; multifunctional 93.6 0.59 2E-05 48.5 12.6 162 265-430 56-234 (266)
94 2x19_B Importin-13; nuclear tr 93.0 17 0.00059 44.1 26.9 274 233-519 503-844 (963)
95 4ffb_C Protein STU2; tubulin f 91.3 2 7E-05 44.3 13.4 102 259-360 59-172 (278)
96 3gs3_A Symplekin, LD45768P; he 91.1 15 0.00052 37.6 21.9 142 210-358 13-175 (257)
97 3o2t_A Symplekin; heat repeat, 90.7 12 0.00042 40.7 19.1 144 209-359 22-186 (386)
98 3a6p_A Exportin-5; exportin-5, 90.5 44 0.0015 42.0 33.6 83 396-488 524-617 (1204)
99 3o2t_A Symplekin; heat repeat, 89.2 11 0.00036 41.2 17.2 236 253-514 24-289 (386)
100 3s4w_B Protein FACD2, fanconi 88.7 59 0.002 40.9 27.4 276 233-537 171-491 (1323)
101 3m1i_C Exportin-1; heat repeat 88.0 24 0.00081 43.6 21.6 117 235-355 32-165 (1049)
102 2g30_A AP-2 complex subunit be 87.2 1.2 4.2E-05 45.9 7.7 60 701-764 40-101 (258)
103 3tt9_A Plakophilin-2; cell adh 86.9 3.7 0.00013 41.6 11.1 100 257-356 10-124 (233)
104 3u0r_A Apoptosis inhibitor 5; 86.9 13 0.00044 41.5 16.0 298 198-529 50-398 (507)
105 3tt9_A Plakophilin-2; cell adh 86.2 13 0.00044 37.5 14.7 107 295-402 11-132 (233)
106 3gs3_A Symplekin, LD45768P; he 85.8 21 0.00071 36.6 16.1 128 252-391 13-145 (257)
107 3dad_A FH1/FH2 domain-containi 85.1 7.4 0.00025 41.5 12.5 75 256-334 161-246 (339)
108 2of3_A ZYG-9; multifunctional 84.8 11 0.00038 38.9 13.5 127 266-392 98-235 (266)
109 3ibv_A Exportin-T; karyopherin 84.2 45 0.0015 40.9 21.0 108 230-341 19-142 (980)
110 3grl_A General vesicular trans 83.8 9.1 0.00031 44.4 13.5 79 333-411 128-218 (651)
111 3gjx_A Exportin-1; transport, 82.3 70 0.0024 39.6 21.6 103 232-338 41-161 (1073)
112 3ldz_A STAM-1, signal transduc 77.7 35 0.0012 31.4 13.0 114 232-377 22-136 (140)
113 4hat_C Exportin-1; heat repeat 75.9 1.4E+02 0.0047 36.8 21.4 153 124-287 435-621 (1023)
114 1lsh_A Lipovitellin (LV-1N, LV 74.8 1.7E+02 0.0058 36.1 24.1 168 323-520 387-573 (1056)
115 4ffb_C Protein STU2; tubulin f 74.2 28 0.00096 35.5 12.7 167 263-432 17-212 (278)
116 4gmo_A Putative uncharacterize 73.4 35 0.0012 39.9 14.8 68 256-324 35-108 (684)
117 1lsh_A Lipovitellin (LV-1N, LV 73.1 45 0.0015 41.3 16.2 56 84-139 411-474 (1056)
118 3g2s_A C-terminal fragment of 72.0 55 0.0019 30.5 12.8 117 232-377 28-145 (149)
119 4hat_C Exportin-1; heat repeat 70.5 1.1E+02 0.0036 37.8 18.5 51 101-151 447-506 (1023)
120 3ldz_A STAM-1, signal transduc 68.7 6.1 0.00021 36.6 5.4 74 87-160 24-105 (140)
121 3a6p_A Exportin-5; exportin-5, 68.4 2.4E+02 0.0083 35.2 24.5 91 265-356 57-162 (1204)
122 1x5b_A Signal transducing adap 64.5 18 0.00061 34.4 7.9 56 232-290 32-87 (163)
123 3l9t_A Putative uncharacterize 62.0 71 0.0024 32.2 12.0 134 261-398 77-212 (240)
124 1mhq_A ADP-ribosylation factor 61.6 23 0.00079 33.0 7.9 55 233-290 19-73 (148)
125 1juq_A ADP-ribosylation factor 60.8 26 0.00089 33.5 8.3 57 232-291 30-86 (171)
126 2jak_A Serine/threonine-protei 60.7 50 0.0017 35.9 11.4 27 491-517 337-363 (392)
127 3g2s_A C-terminal fragment of 50.8 86 0.003 29.1 9.9 98 63-160 5-117 (149)
128 4atg_A TAF6; transcription, TF 50.1 1.8E+02 0.0062 28.3 12.4 124 308-434 24-164 (196)
129 3gjx_A Exportin-1; transport, 49.3 4.4E+02 0.015 32.5 18.6 199 266-485 39-276 (1073)
130 1mhq_A ADP-ribosylation factor 46.6 40 0.0014 31.4 6.9 73 88-160 21-107 (148)
131 3l9t_A Putative uncharacterize 45.7 2.5E+02 0.0085 28.2 13.3 130 231-370 83-218 (240)
132 3zyq_A Hepatocyte growth facto 44.2 2.5E+02 0.0084 27.8 14.2 115 232-377 25-140 (226)
133 4gmo_A Putative uncharacterize 42.8 67 0.0023 37.6 9.6 69 71-140 37-114 (684)
134 1vsy_5 Proteasome activator BL 41.0 2.4E+02 0.0083 34.5 14.4 122 254-376 800-947 (997)
135 1x5b_A Signal transducing adap 40.5 2.3E+02 0.008 26.4 11.5 21 300-320 60-80 (163)
136 1vdy_A Hypothetical protein (R 38.3 59 0.002 30.0 6.4 70 256-325 50-134 (140)
137 3s4w_B Protein FACD2, fanconi 38.0 7.1E+02 0.024 31.3 19.2 76 284-359 388-470 (1323)
138 1elk_A Target of MYB1; superhe 37.5 55 0.0019 30.7 6.3 55 231-288 32-87 (157)
139 1dvp_A HRS, hepatocyte growth 36.9 1.8E+02 0.0062 28.6 10.4 58 231-291 21-78 (220)
140 2f31_A Diaphanous protein homo 35.8 55 0.0019 32.7 6.4 68 268-335 67-143 (233)
141 3eg5_B Protein diaphanous homo 35.3 44 0.0015 36.2 6.0 70 267-336 132-210 (383)
142 2iw3_A Elongation factor 3A; a 34.3 5.9E+02 0.02 31.0 16.1 170 260-437 100-285 (986)
143 1dvp_A HRS, hepatocyte growth 30.8 88 0.003 30.9 6.9 68 89-160 26-106 (220)
144 3zyq_A Hepatocyte growth facto 30.5 81 0.0028 31.4 6.6 70 87-160 27-109 (226)
145 1h2v_C 80 kDa nuclear CAP bind 27.2 4.4E+02 0.015 31.2 13.1 76 311-387 11-88 (771)
146 3rru_A TOM1L1 protein; structu 26.1 1.9E+02 0.0066 26.8 7.9 87 231-320 32-129 (152)
147 3r4h_A Coiled coil helix CC-TE 25.1 59 0.002 21.3 2.7 14 25-38 9-22 (34)
148 1w9c_A CRM1 protein, exportin 24.4 6.3E+02 0.021 26.4 19.3 75 236-321 120-196 (321)
149 2bnx_A Diaphanous protein homo 24.2 6.7E+02 0.023 26.7 13.7 67 269-335 72-147 (386)
150 2iw3_A Elongation factor 3A; a 23.9 6.1E+02 0.021 30.9 13.7 133 239-376 118-259 (986)
151 2b6c_A Hypothetical protein EF 22.2 3.3E+02 0.011 26.5 9.4 69 297-369 129-198 (220)
152 1vsy_5 Proteasome activator BL 21.6 7.2E+02 0.025 30.3 13.9 130 278-410 202-364 (997)
153 1juq_A ADP-ribosylation factor 21.4 5.1E+02 0.017 24.3 11.1 22 299-320 57-78 (171)
154 4f52_E Glomulin; cullin-ring E 21.1 1.4E+02 0.0048 34.3 7.1 82 237-318 367-454 (596)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.1e-93 Score=849.00 Aligned_cols=522 Identities=29% Similarity=0.553 Sum_probs=476.9
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHccC---ChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCC
Q 045023 5 SSGTRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINEN---DQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAG 81 (812)
Q Consensus 5 m~~~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~~---~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~ 81 (812)
|+| |++||++||+|||+++|+++|++|+++||+.|+++ +.++|+++++|+||++|+|||++|||++|+++++|++
T Consensus 10 ~~~--l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~ 87 (621)
T 2vgl_A 10 MRG--LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNR 87 (621)
T ss_dssp CHH--HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSC
T ss_pred chh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCC
Confidence 455 99999999999999999999999999999999953 7899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhc--cCCCcceecc
Q 045023 82 FPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLL--QFRDPNIRKK 159 (812)
Q Consensus 82 ~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll--~~~~pyVRKk 159 (812)
|+.||+||||++.++++++|+++|+||+|+|||+|+||++||+|||+||+|++++|++++.+.|.+++ .|++|||||+
T Consensus 88 ~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~ 167 (621)
T 2vgl_A 88 YTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQS 167 (621)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred C-------------------------------------------------------CCchhHHHHHHHHhcCC-CC-Ccc
Q 045023 160 P-------------------------------------------------------KCLDGLVKTLRDVVNSP-YA-PEY 182 (812)
Q Consensus 160 A-------------------------------------------------------~~v~~lv~~L~~L~~~~-~~-pe~ 182 (812)
| .++|.+++.|++++..+ ++ +||
T Consensus 168 A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 247 (621)
T 2vgl_A 168 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDY 247 (621)
T ss_dssp HHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred HHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccch
Confidence 9 12444556666766655 43 899
Q ss_pred ccccCCChhHHHHHHHHHHhcCCC-CchhhhHHHHHHHHHhhccc-c-------CCCCcchHHHHHHHHHHhcCCChhHH
Q 045023 183 DIAGITDPFLHIRLLKLLHVLGQG-DADASDCMNDILAQVATKTE-S-------NKNAGNAILYECVETIMSIEDNGGLR 253 (812)
Q Consensus 183 ~~~~~~dpwlqv~lL~lL~~l~~~-~~~~~~~l~diL~~v~~~~~-~-------~kn~~~aVl~e~v~~i~~i~~~~~L~ 253 (812)
+|+|+++||+|+++|++|+.|++. +++..+.+.++|.+++++++ + .+|+++||+|||+++|+.+.++++++
T Consensus 248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~ 327 (621)
T 2vgl_A 248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL 327 (621)
T ss_dssp EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999985 57888889999998886532 1 23668899999999999999989999
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH--HHHHHhHhhhccccc-ccCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDA--QAVQRHRATILECVK-DLDASIRKRALELVYLLVNESNVKPLTK 330 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p--~~v~~h~~~i~~cL~-d~D~sIr~~aLell~~l~n~~Nv~~Iv~ 330 (812)
..+++.|++||.++|+|+||+||++|.+++..+| .++++|+..|+.||+ |+|++||++||++++.|+|++|++.|++
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~ 407 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVA 407 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHH
Confidence 9999999999999999999999999999999875 899999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAV 410 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l 410 (812)
||++|+...|.+||.+++.+|+.+|+||+++.+||++++++++..+|+|+.+|+|..+++++.++|++|.|++.+|++.+
T Consensus 408 eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l 487 (621)
T 2vgl_A 408 EMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL 487 (621)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCCh
Q 045023 411 QTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS 490 (812)
Q Consensus 411 ~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~ 490 (812)
.+....+.++++++|++||||+.+.+.++ +++.++++.+..-+ ..++..||.++|||++|++.++|+..
T Consensus 488 ~~~~~~~~li~~~~wilGEy~~~~~~~~~---------~~p~~~l~~l~~~~--~~~~~~v~~~~Lta~~Kl~~~~p~~~ 556 (621)
T 2vgl_A 488 QAPACHENLVKVGGYILGEFGNLIAGDPR---------SSPLIQFNLLHSKF--HLCSVPTRALLLSTYIKFVNLFPEVK 556 (621)
T ss_dssp TSSSCCHHHHHHHHHHHHHHTHHHHSSTT---------SCHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cCccchHHHHHHHHHHhcchHHHhcccCC---------CCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHChHHH
Confidence 97666778899999999999999876432 12335555443222 35689999999999999999999999
Q ss_pred HHHHHHHHHhhC--CCChHHHHHHHHHHHHhccC-HHHHHHhhhcCCCCccc
Q 045023 491 ERIRDIIVQNKG--SLVLELQQRSIEFNSIVEKH-QNIRSTLVERMPVLDEA 539 (812)
Q Consensus 491 ~~i~~ll~~~~~--s~~~evqqRA~ey~~Ll~~~-~~~~~~ll~~mP~~~~~ 539 (812)
+.+.++|+.+++ |.|+||||||+||++||+.. +++++.++++||+|+++
T Consensus 557 ~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~ 608 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER 608 (621)
T ss_dssp HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc
Confidence 999999999998 99999999999999999743 58999999999999876
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.8e-92 Score=836.20 Aligned_cols=531 Identities=52% Similarity=0.892 Sum_probs=502.1
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhH
Q 045023 8 TRLRDMIRSIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRI 87 (812)
Q Consensus 8 ~~L~~fI~~vr~~~t~~eEr~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRl 87 (812)
++|++||++||+||+.+||+++|++|+++||+.|++++.++|+++++||+|++|+|||++|+|++|+|+++|++|+.||+
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl 89 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRI 89 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHH
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-------
Q 045023 88 GYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP------- 160 (812)
Q Consensus 88 gYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA------- 160 (812)
||||++.++++++|+++|+||+|+|||+|+|+++|++||++||+|+++++++++.+.|.+++.|++|||||+|
T Consensus 90 ~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l 169 (618)
T 1w63_A 90 GYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV 169 (618)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------CCchhHHHHHHHHhcCCCCCccccccCCChh
Q 045023 161 -------------------------------------------------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPF 191 (812)
Q Consensus 161 -------------------------------------------------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpw 191 (812)
+++|.++++|++++.++++|+|+|+++++||
T Consensus 170 ~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 170 IRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp HHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred HHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 2355677788888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcch
Q 045023 192 LHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNI 271 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~ni 271 (812)
+|++++++|+.|++.+++..+.+.++|.+++++++..+|.+++|+|||+++++.+..++.++..+++.|++||.++|+|+
T Consensus 250 ~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~v 329 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNI 329 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999999888889999999999888889999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 045023 272 RYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKI 351 (812)
Q Consensus 272 ryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I 351 (812)
||+||.+|..++..+|.++++|...|+.|++|+|.+||++||++++.|+|++|+..|++||+.|+...|.+||.+++.+|
T Consensus 330 r~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I 409 (618)
T 1w63_A 330 RYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGI 409 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcc
Q 045023 352 CSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYG 431 (812)
Q Consensus 352 ~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~ 431 (812)
+.+|++|+++..||+++++++|...|+++.+++|..++++++++|+++.+++.+|++.+.++..++.+.++++||+||||
T Consensus 410 ~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~ 489 (618)
T 1w63_A 410 FLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYG 489 (618)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999976566677889999999999
Q ss_pred cccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHH
Q 045023 432 DMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQR 511 (812)
Q Consensus 432 ~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqR 511 (812)
+.+.++. .+++.|..+++++++++++.+++.+.+++.||.++|||++|++.++|+..+.+.++|+.|..|.|+|||||
T Consensus 490 ~~i~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 490 DLLVSGQ--CEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHHTTCC--CSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHhcccc--cccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhcCCCCHHHHHH
Confidence 9887632 23345667888999999999888777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHhhhcCCCCcccc
Q 045023 512 SIEFNSIVEKHQNIRSTLVERMPVLDEAT 540 (812)
Q Consensus 512 A~ey~~Ll~~~~~~~~~ll~~mP~~~~~~ 540 (812)
|+||++||..++++++.++++||+|++..
T Consensus 568 A~~y~~ll~~~~~~~~~vl~~~P~~~~~~ 596 (618)
T 1w63_A 568 AVEYNALFKKYDHMRSALLERMPVMEKVT 596 (618)
T ss_dssp HHHHHHHHHTTTTHHHHHHSCCCCCCC--
T ss_pred HHHHHHHHcCcHHHHHHHhhcCCCCCccc
Confidence 99999999877889999999999998764
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=2.5e-68 Score=629.84 Aligned_cols=483 Identities=17% Similarity=0.282 Sum_probs=414.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHH
Q 045023 31 RKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSL 110 (812)
Q Consensus 31 ~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl 110 (812)
+.|+++||+.|++++.++|+++++|++|++++|++++|+|++++++++++++..||+||+|++.++++++|+++|+||+|
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l 91 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSF 91 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC--------C----Cch--hHHHHHHHHhcC
Q 045023 111 KQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--------K----CLD--GLVKTLRDVVNS 176 (812)
Q Consensus 111 ~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--------~----~v~--~lv~~L~~L~~~ 176 (812)
+|||+|+|+++|++||++||+|+++++++.+.+.|.+++.|++|||||+| + .++ .++..|.+++.+
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 171 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD 171 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred HHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999 1 222 355666666542
Q ss_pred C-----------------CCCc---cc-----------cccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhcc
Q 045023 177 P-----------------YAPE---YD-----------IAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKT 225 (812)
Q Consensus 177 ~-----------------~~pe---~~-----------~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~ 225 (812)
. ..|+ ++ ....++||+|+++|++|+.|++.+++..+ +++..+...
T Consensus 172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~---~~l~~l~~~- 247 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ---SICERVTPR- 247 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH---HHHHHHTTC-
T ss_pred CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH---HHHHHHHHH-
Confidence 1 1221 11 12357999999999999999987665433 344444433
Q ss_pred ccCCCCcchHHHHHHHHHHhcCC----ChhHHHHHH----HHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhh
Q 045023 226 ESNKNAGNAILYECVETIMSIED----NGGLRVLAI----NILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATI 297 (812)
Q Consensus 226 ~~~kn~~~aVl~e~v~~i~~i~~----~~~L~~l~i----~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i 297 (812)
.++.+++|+|||+++++.+.. ++++...++ ..|. +|.++|+|+||+||++|..++..+|+++++|...|
T Consensus 248 --l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~ 324 (591)
T 2vgl_B 248 --LSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF 324 (591)
T ss_dssp --SCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT
T ss_pred --HcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh
Confidence 245678999999999999752 334333233 3343 45678999999999999999999999999998865
Q ss_pred cccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC
Q 045023 298 LECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG 377 (812)
Q Consensus 298 ~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g 377 (812)
.|+.++|.+||++||++++.++|++|+..|++||++|+...|.+||.+++.+|+.+|++|+++..||++++++++...|
T Consensus 325 -~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~ 403 (591)
T 2vgl_B 325 -FVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV 403 (591)
T ss_dssp -SCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCC
T ss_pred -eeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccc
Confidence 5887778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHH
Q 045023 378 NFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDV 457 (812)
Q Consensus 378 ~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~ 457 (812)
+++..++|..+.++++++|+.+++++..|++.+++. ....++++++|++||||+.+.+. . ++
T Consensus 404 ~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~~--------------~---~~ 465 (591)
T 2vgl_B 404 NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSL-DEPDARAAMIWIVGEYAERIDNA--------------D---EL 465 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTTH--------------H---HH
T ss_pred hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHcccccccCH--------------H---HH
Confidence 999999999999999999999999999999988753 34456899999999999986431 2 44
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHHHccCCCCh-HHHHHHHHHhhC-CCChHHHHHHHHHHHHhcc-CHHHHHHhhhcC
Q 045023 458 VEIAIKHH-SSDITTKAMAMVALLKLSSRFPSCS-ERIRDIIVQNKG-SLVLELQQRSIEFNSIVEK-HQNIRSTLVERM 533 (812)
Q Consensus 458 l~~~l~~~-~~~~~vk~~iLtAl~KL~~r~p~~~-~~i~~ll~~~~~-s~~~evqqRA~ey~~Ll~~-~~~~~~~ll~~m 533 (812)
++.+++.. .++..||.++|+|++|++.++|+.. +.+..+|+.+.. +.|+||||||+||++||+. ....++.++++|
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~ 545 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEK 545 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCC
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 55556553 3578999999999999999999865 789999999975 5899999999999999975 456889999999
Q ss_pred CCCccc
Q 045023 534 PVLDEA 539 (812)
Q Consensus 534 P~~~~~ 539 (812)
|++++.
T Consensus 546 p~~~~~ 551 (591)
T 2vgl_B 546 PLISEE 551 (591)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998654
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=3.3e-46 Score=408.23 Aligned_cols=277 Identities=18% Similarity=0.260 Sum_probs=179.2
Q ss_pred HHHccC--ChHHHHHHHHHHHHHHHcCCC-----CCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHH
Q 045023 39 AAINEN--DQDYRHRNLAKLMFIHMLGYP-----THFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 111 (812)
Q Consensus 39 ~~l~~~--~~~~r~~~l~KLiyl~~lG~~-----~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~ 111 (812)
+.|++. ++.+++++++|+||++++|++ +++.|++++|+++|+|+++||+||||++.|.++.+| ++|+||+|+
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~ 110 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLT 110 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHH
Confidence 489887 666667799999999999988 468899999999999999999999999999999665 569999999
Q ss_pred hhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC--------CCchh----HHHHHHHHhcCCC-
Q 045023 112 QDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP--------KCLDG----LVKTLRDVVNSPY- 178 (812)
Q Consensus 112 kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA--------~~v~~----lv~~L~~L~~~~~- 178 (812)
||++|+||++||+|||+||+|++++|++++.+.|++++.|++|||||+| +..|+ ++..+++++.+.-
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~ 190 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNI 190 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSH
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999 23333 4445555553320
Q ss_pred ----------------CC--------ccccccCCChhHHHHHHHHHHhcCCCC-chhhhHHHHHHHHHhhccccCCCCcc
Q 045023 179 ----------------AP--------EYDIAGITDPFLHIRLLKLLHVLGQGD-ADASDCMNDILAQVATKTESNKNAGN 233 (812)
Q Consensus 179 ----------------~p--------e~~~~~~~dpwlqv~lL~lL~~l~~~~-~~~~~~l~diL~~v~~~~~~~kn~~~ 233 (812)
.+ .+.-.+..+||+||.+||+++.|++.+ ++.++.+.+++..++ +|.++
T Consensus 191 ~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L------~~~~~ 264 (355)
T 3tjz_B 191 MVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL------RNKHE 264 (355)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCC------CCSSH
T ss_pred cHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH------cCCCh
Confidence 00 011134678999999999999999988 677788888887665 46799
Q ss_pred hHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHH
Q 045023 234 AILYECVETIMSIED-NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRA 312 (812)
Q Consensus 234 aVl~e~v~~i~~i~~-~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~a 312 (812)
||+|||+++|+.+.. ...++..+++.|+.||+++|+|+||+||++|.+++..+|++|++|..+|..|+.|+|.+|+..|
T Consensus 265 aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 265 MVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp HHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHH
Confidence 999999999999976 4566778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 045023 313 LELVYLLVNE 322 (812)
Q Consensus 313 Lell~~l~n~ 322 (812)
+..|.+..+|
T Consensus 345 ittllktg~e 354 (355)
T 3tjz_B 345 ITTLLKTGSE 354 (355)
T ss_dssp ----------
T ss_pred HHHhhhccCC
Confidence 9999988776
No 5
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=99.98 E-value=4e-32 Score=259.51 Aligned_cols=137 Identities=35% Similarity=0.534 Sum_probs=110.8
Q ss_pred cccccCCCCCCCCCCCCCCCCCCceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEee
Q 045023 673 MIDLLDGFVPNSPKPEDNGPAYPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHL 752 (812)
Q Consensus 673 ~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l 752 (812)
.+||+||.+..|..... ++..+++++|+++||+|+|++.+++.+++++.|+++|+|++..+|++|+|||||||+|||+|
T Consensus 8 ~~~l~~~~~~~~l~~~~-~~~~~~i~v~~~~~l~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL 86 (146)
T 1iu1_A 8 PHFLLDGLSSQPLFNDI-AAGIPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQL 86 (146)
T ss_dssp --------------------CCCCEEEEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEE
T ss_pred hHHhhcCCCCCCccCCC-CCCCCCEEEEecCCEEEEEEEEcCCCCCCEEEEEEEEEeCCCCccccEEEEEEcCcccEEEe
Confidence 45777776543222212 23346799999999999999999877889999999999999999999999999999999999
Q ss_pred eCCCCCCcCCCCCCCccEEEEEEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCCCC
Q 045023 753 DPASGNTLPASGNGSITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL 812 (812)
Q Consensus 753 ~p~S~~~l~~~~~~~itQ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~~~ 812 (812)
+||||++|+|++.++|||.|+|.|+.+ +++|||||++|++||++++|+|+|++||.++
T Consensus 87 ~ppSg~~L~p~~~~~ItQ~~~I~n~~~--~~lklR~klsY~~~g~~~~E~~~v~~fP~~~ 144 (146)
T 1iu1_A 87 LSPSSSIVPAFNTGTITQVIKVLNPQK--QQLRMRIKLTYNHKGSAMQDLAEVNNFPPQS 144 (146)
T ss_dssp CCCSCSCBCGGGCCCEEEEEEEECTTC--CCCCCEEEEEEEETTEEEEEEEECCBCCGGG
T ss_pred eCCCCCccCCCCCCCEEEEEEEeCCCC--CCEEEEEEEEEEECCeEEEEEEEECCCChhh
Confidence 999999999998889999999999865 4899999999999999999999999999753
No 6
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=99.97 E-value=6.9e-32 Score=250.43 Aligned_cols=115 Identities=40% Similarity=0.647 Sum_probs=106.5
Q ss_pred CceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEE
Q 045023 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRV 774 (812)
Q Consensus 695 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i 774 (812)
+++++|+++||+|+|++.+++.+++.+.|+++|+|+++.+|+||+|||||||+|||+|+||||++|+|++.++|||.|+|
T Consensus 5 p~i~~~~~~~l~I~~~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i 84 (122)
T 3zy7_A 5 PSITAYDALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV 84 (122)
T ss_dssp CCEEEEEETTEEEEEEEECC----CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE
T ss_pred CCEEEEeCCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE
Confidence 56999999999999999998778899999999999999999999999999999999999999999999888899999999
Q ss_pred EeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCCC
Q 045023 775 TNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRD 811 (812)
Q Consensus 775 ~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~~ 811 (812)
.|+.+ ++|||||||+|++||++++|+|+|++||++
T Consensus 85 ~n~~~--~~lklR~klsY~~~g~~~~E~~~v~~fp~~ 119 (122)
T 3zy7_A 85 LNPQK--QQLRMRIKLTFNWNGYKVQSEAEVNNFPPQ 119 (122)
T ss_dssp ECTTC--CCCCEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred ECCCC--CCEEEEEEEEEEECCEEEEEEEEECCCChh
Confidence 99975 499999999999999999999999999975
No 7
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=248.67 Aligned_cols=117 Identities=41% Similarity=0.631 Sum_probs=110.7
Q ss_pred CCceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEE
Q 045023 694 YPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLR 773 (812)
Q Consensus 694 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~ 773 (812)
.+++++|+++||+|+|++.+++.+++++.|+++|+|++..+|++|+|||||||+|||+|+||||++|+|++.++|||.|+
T Consensus 13 ~~~i~v~~~~~l~I~f~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~ 92 (131)
T 2e9g_A 13 IPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFR 92 (131)
T ss_dssp CCCEEEEECSSEEEEEEEECCSSCTTEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTCCCBCCCEE
T ss_pred CCCEEEEecCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCCCCEEEEEE
Confidence 46799999999999999998877889999999999999999999999999999999999999999999999889999999
Q ss_pred EEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCCCC
Q 045023 774 VTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL 812 (812)
Q Consensus 774 i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~~~ 812 (812)
|.|+.+ ++|||||||+|++||++++|+++|++||.++
T Consensus 93 i~n~~~--~~l~lR~klsY~~~g~~~~e~~~v~~fP~~~ 129 (131)
T 2e9g_A 93 ILNPNK--APLRLKLRLTYDHFHQSVQEIFEVNNLPVES 129 (131)
T ss_dssp EECTTC--CCCCEEEEEEEECSSSEEEEEEEECCCCSTT
T ss_pred EeCCCC--CCEEEEEEEEEEECCeEEEEEEEEccCChHH
Confidence 999965 4999999999999999999999999999875
No 8
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=99.97 E-value=6e-31 Score=249.33 Aligned_cols=117 Identities=38% Similarity=0.608 Sum_probs=110.2
Q ss_pred CCceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEE
Q 045023 694 YPSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLR 773 (812)
Q Consensus 694 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~ 773 (812)
.+++++|+++||+|+|.+.+++.+++++.|+++|+|++..+|+||+|||||||+|||+|+||||++|+|++.++|||.|+
T Consensus 22 ~~~i~v~~~n~L~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~ 101 (140)
T 1gyu_A 22 IPSITAYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIK 101 (140)
T ss_dssp CCCEEEEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEE
T ss_pred CCCEEEEecCCEEEEEEEEcCCCCCCEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEE
Confidence 36799999999999999999877889999999999999999999999999999999999999999999998889999999
Q ss_pred EEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCCCC
Q 045023 774 VTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPRDL 812 (812)
Q Consensus 774 i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~~~ 812 (812)
|.|+.+ ++|||||||+|++||++++|+|+|++||.++
T Consensus 102 I~n~~~--~~l~LR~klsY~~~g~~~~E~~~v~~fP~~~ 138 (140)
T 1gyu_A 102 VLNPQK--QQLRMRIKLTYNHKGSAMQDLAEVNNFPPQS 138 (140)
T ss_dssp EECTTC--CCCCEEEEEEEEETTEEEEEEEEECCCCGGG
T ss_pred EeCCCC--CCEEEEEEEEEEECCeEEEEEEEECCCChhh
Confidence 999865 4899999999999999999999999999764
No 9
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=233.99 Aligned_cols=113 Identities=27% Similarity=0.438 Sum_probs=104.0
Q ss_pred CceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCCCCccEEEEE
Q 045023 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGNGSITQTLRV 774 (812)
Q Consensus 695 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~~~itQ~~~i 774 (812)
+++++|+++||+|+|++.+++ ++.+.|+++|+|+++.+|++|+|||||||+|||+|+||||++|+|++.++|||.|+|
T Consensus 9 ~~v~~~~~~~l~I~~~~~~~~--~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 9 ARTLVNQSPNLKIEFEISRES--NSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQSSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp CEEEEEECSSEEEEEEEEECS--SSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCCSCSCBCTTCTTCEEEEEEE
T ss_pred ceEEEEeCCCEEEEEEEEeCC--CCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECCCcCccCCCCCCCEEEEEEE
Confidence 679999999999999999865 568999999999999999999999999999999999999999999998999999999
Q ss_pred EeCCCCC-CCeEEEEEEEEEeCCeeeeeeeEecCCCC
Q 045023 775 TNSQHGK-KPLVMRTRIAYKLNNRDVLEEGQINNFPR 810 (812)
Q Consensus 775 ~n~~~~~-k~l~lr~klsY~~~g~~~~e~~~v~~~p~ 810 (812)
.|+..+. ++||||||++|++||++++|+|++. ||.
T Consensus 87 ~n~~~~~~~~lklR~klsY~~~g~~~~E~g~~~-lp~ 122 (123)
T 3mnm_A 87 ENAPANPSKALXVKWKVNYSVNSTQAEETAVFT-LPN 122 (123)
T ss_dssp ESCCCC---CCEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred ecCCCCCCCCEEEEEEEEEEECCeEEEEEEEEe-cCC
Confidence 9886322 6999999999999999999999998 885
No 10
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=99.96 E-value=3.6e-29 Score=240.47 Aligned_cols=115 Identities=27% Similarity=0.554 Sum_probs=107.4
Q ss_pred CCceEEEecCCeEEEEEeecC--CCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCCCCCCcCCCCC----CC
Q 045023 694 YPSIVAFESSSLRLTFNFSKP--PGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPASGNTLPASGN----GS 767 (812)
Q Consensus 694 ~~~~~~~~~~~l~i~~~~~~~--~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~S~~~l~~~~~----~~ 767 (812)
.+++++|+++||+|+|++.++ +++++...|.++|+|++..+|+||+|||||||+|||+|+||||++|+|++. ++
T Consensus 26 ~~~v~v~~~n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ 105 (153)
T 1p4u_A 26 ALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAA 105 (153)
T ss_dssp SCCEEEEEETTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCE
T ss_pred CCCEEEEecCCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCC
Confidence 457999999999999999985 457888899999999999999999999999999999999999999999886 67
Q ss_pred ccEEEEEEeCCCCCCCeEEEEEEEEEeCCeeeeeeeEecCCCC
Q 045023 768 ITQTLRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEGQINNFPR 810 (812)
Q Consensus 768 itQ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~~v~~~p~ 810 (812)
|||.|+|.|+.+ +++|||||++|++||++++|+|+|++||+
T Consensus 106 ItQ~m~v~n~~~--~~l~LR~klsY~~~g~~~~E~~~v~~fP~ 146 (153)
T 1p4u_A 106 ITQVMLLANPLK--EKVRLRYKLTFALGEQLSTEVGEVDQFPP 146 (153)
T ss_dssp EEEEEEEECTTC--CCCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred EEEEEEEeCCCC--CCEEEEEEEEEEECCeEEEEEEEECCCCC
Confidence 999999999865 59999999999999999999999999997
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.24 E-value=8.2e-10 Score=128.25 Aligned_cols=412 Identities=7% Similarity=0.063 Sum_probs=252.7
Q ss_pred hhccCCCCchhHHHHHHHHhcccch-hHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccC----chhhHHHHHHHHHHhcc
Q 045023 76 SIASAGFPEKRIGYLGLMLLLDERQ-EVLMLVTNSLKQDLNHTNQYIVGLALCALGNIC----SAEMARDLAPEVERLLQ 150 (812)
Q Consensus 76 li~s~~~~~KRlgYL~~~~ll~~~~-el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~----~~e~~~~l~~~V~~ll~ 150 (812)
+..++++..|..+...+..+...-+ ...--+...+.+-++++++.+|..|+.+++.++ .....+.+.|.+.+++.
T Consensus 134 l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS 213 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc
Confidence 4455556555555544444433221 112223445555667889999999999998873 34556778888889999
Q ss_pred CCCcceeccC-CC-------------chhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCC-Cch-hhhHH
Q 045023 151 FRDPNIRKKP-KC-------------LDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQG-DAD-ASDCM 214 (812)
Q Consensus 151 ~~~pyVRKkA-~~-------------v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~-~~~-~~~~l 214 (812)
|.++.||+.| .+ .+.++..+..++. ..++.......+.|..++.. .++ ..+.+
T Consensus 214 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-----------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 282 (588)
T 1b3u_A 214 DEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE-----------DKSWRVRYMVADKFTELQKAVGPEITKTDL 282 (588)
T ss_dssp CSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-----------CSSHHHHHHHHHTHHHHHHHHCHHHHHHTH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-----------CCCHHHHHHHHHHHHHHHHHhCcccchhHH
Confidence 9999999887 11 1223333333332 12333344444444444321 011 11223
Q ss_pred HHHHHHHhhccccCCCCcchHHHHHHHHHHhcC---CCh----hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-
Q 045023 215 NDILAQVATKTESNKNAGNAILYECVETIMSIE---DNG----GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD- 286 (812)
Q Consensus 215 ~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~---~~~----~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~- 286 (812)
...+..++. .....|...|+.++-.+. ... ......+..+..++.+.+..+|..+...|..++..-
T Consensus 283 ~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 283 VPAFQNLMK------DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHHHHHHT------CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred HHHHHHHhC------CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 333333332 123445555555544331 111 122334566677788888899999998888876532
Q ss_pred HHHH-HHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCc
Q 045023 287 AQAV-QRHRATILECVKDLDASIRKRALELVYLLVNESN----VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPD 361 (812)
Q Consensus 287 p~~v-~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N----v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~ 361 (812)
...+ ..-...++.+++|.+..+|..+++-+..++..-. ...+++.|..++.+.+..+|..++..++.++..+.+.
T Consensus 357 ~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 2222 2223445678899999999999987777665433 3567777777777778889999999999999876643
Q ss_pred h--hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccC
Q 045023 362 K--IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL--HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNN 437 (812)
Q Consensus 362 ~--~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l--~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~ 437 (812)
. ...+..+++.+......|...++..+..++.....- ...++..+...+. ......+..++|++|+.+..+...
T Consensus 437 ~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~ 514 (588)
T 1b3u_A 437 FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQD 514 (588)
T ss_dssp GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHH
Confidence 2 346677777777666668888888887777654321 1223333332222 234457888999999987654211
Q ss_pred ccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCC--hHHHHHHHHHhhCCCChHHHHHHHHH
Q 045023 438 VGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSC--SERIRDIIVQNKGSLVLELQQRSIEF 515 (812)
Q Consensus 438 ~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~--~~~i~~ll~~~~~s~~~evqqRA~ey 515 (812)
. + .+.++..+...++ ...+.||..++.++.++...+... .+.+...+.....+.|.+||+.|++-
T Consensus 515 ~-~----------~~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~a 581 (588)
T 1b3u_A 515 I-T----------TKHMLPTVLRMAG--DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581 (588)
T ss_dssp H-H----------HHHTHHHHHHGGG--CSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-H----------HHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 0 0 1234444444443 235899999999999999877432 24677788888899999999999987
Q ss_pred HHHh
Q 045023 516 NSIV 519 (812)
Q Consensus 516 ~~Ll 519 (812)
..-+
T Consensus 582 l~~l 585 (588)
T 1b3u_A 582 LTVL 585 (588)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7655
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.23 E-value=4.9e-10 Score=131.81 Aligned_cols=419 Identities=16% Similarity=0.116 Sum_probs=267.0
Q ss_pred HHHHHhhccCCCC-----chhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccC--chhhHHHHHH
Q 045023 71 MECLKSIASAGFP-----EKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNIC--SAEMARDLAP 143 (812)
Q Consensus 71 ~evikli~s~~~~-----~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~--~~e~~~~l~~ 143 (812)
.++-+.+.+++.. .||+.|+ +.+-.+-+.+..-+++ =+.|+|+.++-++--+++.+. .+|++..+..
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~--~~~G~d~~~~~~~vi~----l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAA--MTVGKDVSSLFPDVVN----CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHH--HHTTCCCGGGHHHHHH----TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH--HHCCCChHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 4555567777644 3344443 3333333444444443 478889888855544444442 3688888889
Q ss_pred HHHHhccCCCcceeccC----------CCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhh-
Q 045023 144 EVERLLQFRDPNIRKKP----------KCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASD- 212 (812)
Q Consensus 144 ~V~~ll~~~~pyVRKkA----------~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~- 212 (812)
.+.+-+.|+||+||..| ...+.++..+..++. ..+|...-+....+..+.+.+++..+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~-----------d~~~~VRk~A~~al~~i~~~~p~~~~~ 158 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK-----------DEDPYVRKTAAVCVAKLHDINAQMVED 158 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSS-----------CSCHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcC-----------CCChHHHHHHHHHHHHHHhhChhhccc
Confidence 99999999999999888 123334444555543 34777776666666666555555433
Q ss_pred -HHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCCh------hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 045023 213 -CMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNG------GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV 285 (812)
Q Consensus 213 -~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~------~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~ 285 (812)
.+.+.|..++. ..++.|...|+.++..+..+. .+...++..|.+.+...++-.+-..|+.|..+...
T Consensus 159 ~~~~~~l~~lL~------d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~ 232 (591)
T 2vgl_B 159 QGFLDSLRDLIA------DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK 232 (591)
T ss_dssp HHHHHHHHHTTS------CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred ccHHHHHHHHhC------CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence 23344444443 245789999999999875432 12223445555556667788888888888777766
Q ss_pred CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcC-----CCCHHHHHHHHHH---HhhhcCHHHHHHHHHHHHHHHhh
Q 045023 286 DAQAVQRHRATILECVKDLDASIRKRALELVYLLVN-----ESNVKPLTKELID---YLEISDQEFKGDLTAKICSMVEK 357 (812)
Q Consensus 286 ~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n-----~~Nv~~Iv~eLl~---yl~~~d~~~~~~li~~I~~la~k 357 (812)
++.........+..++++.+..|+..|...+..+.+ ++-++.+++.+.. ++...|+++|-.++..|+.++.+
T Consensus 233 ~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 233 DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 777777777888899999999999999999999874 3456655544433 55568999999999999999988
Q ss_pred hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccC
Q 045023 358 FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNN 437 (812)
Q Consensus 358 ~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~ 437 (812)
++....-++..++... ....+|..+.+..+..+. +++--..++..|..++.+ . ...+++.++|.||..+.....
T Consensus 313 ~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~-~-d~~~r~~~v~aI~~la~~~~~- 386 (591)
T 2vgl_B 313 RPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATE-V-DVDFVRKAVRAIGRCAIKVEQ- 386 (591)
T ss_dssp CCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTS-S-CHHHHHHHHHHHHHHHTTCHH-
T ss_pred ChHHHHHHHHhheecc-CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHhChh-
Confidence 7654333333322111 222456666665555443 222234567777777663 2 345788999999998865321
Q ss_pred ccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHH-HHHHHHHhhCCCChHHHHHHHHHH
Q 045023 438 VGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSER-IRDIIVQNKGSLVLELQQRSIEFN 516 (812)
Q Consensus 438 ~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~-i~~ll~~~~~s~~~evqqRA~ey~ 516 (812)
..+.+++.+..++.. ....++..++.++..+..++|+..+. +..+++......+++++..+. |
T Consensus 387 ------------~~~~~v~~Ll~ll~~--~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~--w 450 (591)
T 2vgl_B 387 ------------SAERCVSTLLDLIQT--KVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMI--W 450 (591)
T ss_dssp ------------HHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHH--H
T ss_pred ------------HHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHH--H
Confidence 124677777777753 35667777788999998888886543 444555555677888865553 4
Q ss_pred HHhc------cCHHHHHHhhhcCC
Q 045023 517 SIVE------KHQNIRSTLVERMP 534 (812)
Q Consensus 517 ~Ll~------~~~~~~~~ll~~mP 534 (812)
.|=. ..+++.+.++.++.
T Consensus 451 ilGey~~~~~~~~~~l~~l~~~~~ 474 (591)
T 2vgl_B 451 IVGEYAERIDNADELLESFLEGFH 474 (591)
T ss_dssp HHHTTCTTCTTHHHHHHHHSTTCS
T ss_pred HHHcccccccCHHHHHHHHHHhhc
Confidence 3332 12455556666544
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.10 E-value=1.6e-07 Score=114.94 Aligned_cols=475 Identities=13% Similarity=0.150 Sum_probs=270.5
Q ss_pred hHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH-HHHcCCCC--CChhHHHHHhhccCCCCchhHHHHHHHHhcccc
Q 045023 23 AAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMF-IHMLGYPT--HFGQMECLKSIASAGFPEKRIGYLGLMLLLDER 99 (812)
Q Consensus 23 ~~eEr~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiy-l~~lG~~~--~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~ 99 (812)
.++++..|+..+-+ .+.+++...|. .+..++. +.-..++- .......++++.+++...|..+...+..+++..
T Consensus 84 ~~~~~~~ik~~ll~---~l~~~~~~vr~-~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 84 PNGVTDFIKSECLN---NIGDSSPLIRA-TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp CHHHHHHHHHHHHT---TTTCSSHHHHH-HHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HHcCCCHHHHH-HHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 46677777777633 25565655554 3344443 33333333 346677788888888888888887777776655
Q ss_pred hhH---------HHHHHHHHHhhcCCCCHhHHHHHHHHHhccCc------hhhHHHHHHHHHHhccCCCcceeccC-CC-
Q 045023 100 QEV---------LMLVTNSLKQDLNHTNQYIVGLALCALGNICS------AEMARDLAPEVERLLQFRDPNIRKKP-KC- 162 (812)
Q Consensus 100 ~el---------~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~------~e~~~~l~~~V~~ll~~~~pyVRKkA-~~- 162 (812)
++. +--++..+.+-++++++.+|..|+++++.+.. ....+.+.+.+.+++.+.++.||+.| .+
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 443 34456677788889999999999999998753 12345677888888899999999988 11
Q ss_pred --------------chhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCc--h-hhhHHHHHHHHHhhcc
Q 045023 163 --------------LDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDA--D-ASDCMNDILAQVATKT 225 (812)
Q Consensus 163 --------------v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~--~-~~~~l~diL~~v~~~~ 225 (812)
.+.++..+-.++. ..++-.....++++..++.... . ....+..++..+....
T Consensus 240 ~~l~~~~~~~~~~~l~~l~~~l~~~~~-----------~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l 308 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHMHNIVEYMLQRTQ-----------DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM 308 (852)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHT-----------CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHcc-----------CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHc
Confidence 1222222222221 2345555566666666654321 0 1111222332222211
Q ss_pred ------------c--cC-CC----CcchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 045023 226 ------------E--SN-KN----AGNAILYECVETIMSIED--NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAIT 284 (812)
Q Consensus 226 ------------~--~~-kn----~~~aVl~e~v~~i~~i~~--~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~ 284 (812)
+ .. .. ....|-..++.++-.+.. ...+....+..+..++.+.+..+|..|+..|..++.
T Consensus 309 ~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 309 KYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp SCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred CCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 1 00 00 223444445554443321 133444567777788888899999999999999988
Q ss_pred hCHHHHHHhH----hhhcccccccCHhHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Q 045023 285 VDAQAVQRHR----ATILECVKDLDASIRKRALELVYLLVN-------ESNVKPLTKELIDYLEISDQEFKGDLTAKICS 353 (812)
Q Consensus 285 ~~p~~v~~h~----~~i~~cL~d~D~sIr~~aLell~~l~n-------~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~ 353 (812)
..+..+..|. ..++.+++|++..+|..+...+..++. ......+++.|+..+.+.+...|..++.+++.
T Consensus 389 ~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 389 GCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFAT 468 (852)
T ss_dssp TTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7665554444 446678899999999999998877664 45678899999999988899999999999999
Q ss_pred HHhhhCCch----hHHHHHHHHHHhhcCcc---chHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhh--ccchHHHHH
Q 045023 354 MVEKFSPDK----IWYIDQMLKVLSEAGNF---VKDEVWHALIVVISNAS---DLHGYTVRALYRAVQT--SIEQESLVR 421 (812)
Q Consensus 354 la~k~~~~~----~w~vd~ll~lL~~~g~~---v~~e~i~~i~~li~~~p---~l~~~~v~~L~~~l~~--~~~~~~l~~ 421 (812)
+++...+.. .-.+..++.++...... +.-+++..+.+.+...- +.....+..+...+.. +... .+ +
T Consensus 469 l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~-~~-~ 546 (852)
T 4fdd_A 469 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DL-F 546 (852)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCT-TH-H
T ss_pred HHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccH-HH-H
Confidence 997654433 34444455555432211 11233333333332211 1112222222221111 1111 11 2
Q ss_pred HHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHh-------c--cC--CCHHHHHHHHHHHHHHHccCCCC-
Q 045023 422 VAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIK-------H--HS--SDITTKAMAMVALLKLSSRFPSC- 489 (812)
Q Consensus 422 ~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~-------~--~~--~~~~vk~~iLtAl~KL~~r~p~~- 489 (812)
.++.|+|..+..+.. .+.+.. + .+ -..+++.++..+. . .. .+..++..++.++.-++..+.+.
T Consensus 547 ~~~~~l~~i~~~~g~--~~~~~~-~-~i-~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~ 621 (852)
T 4fdd_A 547 PLLECLSSVATALQS--GFLPYC-E-PV-YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 621 (852)
T ss_dssp HHHHHHHHHHHHHGG--GGHHHH-H-HH-HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhH--hHHHHH-H-HH-HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH
Confidence 445555544433211 000000 0 00 0112233332221 0 11 13567777777777777665332
Q ss_pred h-----HHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 490 S-----ERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 490 ~-----~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
. +.+..++-.+..+.+.+||+-|...+.-+
T Consensus 622 ~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 622 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp HHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 2 34566677777888899999887766544
No 14
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.07 E-value=1.2e-08 Score=118.38 Aligned_cols=378 Identities=13% Similarity=0.111 Sum_probs=233.7
Q ss_pred HHhhcCCCCHhHHHHHHHHHhccCc----hhhHHHHHHHHHHhccCCCcceeccCC-C------------chhHHHHHHH
Q 045023 110 LKQDLNHTNQYIVGLALCALGNICS----AEMARDLAPEVERLLQFRDPNIRKKPK-C------------LDGLVKTLRD 172 (812)
Q Consensus 110 l~kDL~s~n~~i~~lAL~~Ls~I~~----~e~~~~l~~~V~~ll~~~~pyVRKkA~-~------------v~~lv~~L~~ 172 (812)
+.+-+.++++.+|..|..+|+++.. ..+-+.+.+.+.++..+.++.+|..|- + .+.++..+.+
T Consensus 92 L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 171 (588)
T 1b3u_A 92 LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRN 171 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344567788888888888887643 234455677777777777777777761 1 1223333333
Q ss_pred HhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCc--hhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC---
Q 045023 173 VVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDA--DASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE--- 247 (812)
Q Consensus 173 L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~--~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~--- 247 (812)
++. ..+|......++.|..++..-+ ...+.+...+..... .....|...|+.++..+.
T Consensus 172 l~~-----------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~ 234 (588)
T 1b3u_A 172 LCS-----------DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS------DEQDSVRLLAVEACVNIAQLL 234 (588)
T ss_dssp HHT-----------CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT------CSCHHHHTTHHHHHHHHHHHS
T ss_pred HhC-----------CCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHhC
Confidence 321 2355555566666655543211 111223333333332 123456666666655442
Q ss_pred CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHH-HhHhhhcccccccCHhHHHHHHHHHHHhcCCC--
Q 045023 248 DNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQ-RHRATILECVKDLDASIRKRALELVYLLVNES-- 323 (812)
Q Consensus 248 ~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~-~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~-- 323 (812)
.+.......+..+..++.+.+..+|+.+...|..+... .++.+. .-...++.+++|++..+|+.+..-+-.++..-
T Consensus 235 ~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp CHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred CHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 22233344566677778888889999999999998864 233322 22344567788999999999888777766432
Q ss_pred ------CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch--hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC
Q 045023 324 ------NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK--IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA 395 (812)
Q Consensus 324 ------Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~--~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~ 395 (812)
-...+++.+..++.+.+...|..++..++.++..+.... ...+..++.++......|...++..+..+....
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 245567777777777888999999999998887665332 234566677776655567777776666666543
Q ss_pred CC--cHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHH
Q 045023 396 SD--LHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKA 473 (812)
Q Consensus 396 p~--l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~ 473 (812)
.. ....++..+...+.+ .....+..+++++|.++..+.... -.+.++..+...+.. ....+|.
T Consensus 395 ~~~~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~-----------~~~~l~~~l~~~l~d--~~~~Vr~ 459 (588)
T 1b3u_A 395 GIRQLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEF-----------FDEKLNSLCMAWLVD--HVYAIRE 459 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGG-----------CCHHHHHHHHHGGGC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHH-----------HHHHHHHHHHHHhcC--CcHHHHH
Confidence 32 224455556555543 344567888899998876442110 013456666555543 3578999
Q ss_pred HHHHHHHHHHccCCCC--hHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 474 MAMVALLKLSSRFPSC--SERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 474 ~iLtAl~KL~~r~p~~--~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
..+.++.++...++.. .+.+...+.....+.+..+|..|.+...-+
T Consensus 460 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l 507 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 9999999998776431 244555555666788899998888766555
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.07 E-value=9.3e-08 Score=117.03 Aligned_cols=391 Identities=15% Similarity=0.142 Sum_probs=225.6
Q ss_pred ccCChHHHHHHHHHHHHHHHcCCCCCC--hhHHHHHhhccCCCCchhHHHHHHHHhccc-----chhHHHHHHHHHHhhc
Q 045023 42 NENDQDYRHRNLAKLMFIHMLGYPTHF--GQMECLKSIASAGFPEKRIGYLGLMLLLDE-----RQEVLMLVTNSLKQDL 114 (812)
Q Consensus 42 ~~~~~~~r~~~l~KLiyl~~lG~~~~~--~~~evikli~s~~~~~KRlgYL~~~~ll~~-----~~el~~L~~Nsl~kDL 114 (812)
.++|...|+.+-+.|--+ ...+ .| ...+++..+.+.+...|.++-+++...+.. .++..-.+-+.+.+=|
T Consensus 23 ~s~d~~~r~~Ae~~L~~~--~~~p-~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l 99 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQL--NQYP-DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 99 (852)
T ss_dssp TCSCHHHHHHHHHHHHHH--TTSH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHHHH--HhCC-CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 455777777777776533 1111 11 122333322345556666666666655432 2233333444444445
Q ss_pred CCCCHhHHHHHHHHHhccCchh---hHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChh
Q 045023 115 NHTNQYIVGLALCALGNICSAE---MARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPF 191 (812)
Q Consensus 115 ~s~n~~i~~lAL~~Ls~I~~~e---~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpw 191 (812)
.++++.+|..|-.+++.|...+ --+++.+.+.+++.+.++.+|..|
T Consensus 100 ~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~a------------------------------- 148 (852)
T 4fdd_A 100 GDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGA------------------------------- 148 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHH-------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHH-------------------------------
Confidence 6666666666666666654322 233455555555555555444433
Q ss_pred HHHHHHHHHHhcCCCCchh------hhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC--ChhH---HHHHHHHH
Q 045023 192 LHIRLLKLLHVLGQGDADA------SDCMNDILAQVATKTESNKNAGNAILYECVETIMSIED--NGGL---RVLAINIL 260 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~------~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~--~~~L---~~l~i~~L 260 (812)
+..|..++...+.. ...+..++..+.... +.....|..+|++++..+-. ...+ ....+..+
T Consensus 149 -----l~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l---~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l 220 (852)
T 4fdd_A 149 -----FGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF---KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENL 220 (852)
T ss_dssp -----HHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT---TCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHH
T ss_pred -----HHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222222110000 011333444443322 12356778888888765532 1111 22356677
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhc----ccccccCHhHHHHHHHHHHHhcCCC--------CHHHH
Q 045023 261 GRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATIL----ECVKDLDASIRKRALELVYLLVNES--------NVKPL 328 (812)
Q Consensus 261 ~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~----~cL~d~D~sIr~~aLell~~l~n~~--------Nv~~I 328 (812)
..++.+.+..+|..++++|..++...|+.+..|...++ .++.|.|..+|..|++.+..++... .+..+
T Consensus 221 ~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l 300 (852)
T 4fdd_A 221 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL 300 (852)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 77788889999999999999999999999888865544 5678999999999999999999754 34466
Q ss_pred HHHHHHHhh-----------h--cC---------HHHHHHHHHHHHHHHhhhCCc-hhHHHHHHHHHHhhcCccchHHHH
Q 045023 329 TKELIDYLE-----------I--SD---------QEFKGDLTAKICSMVEKFSPD-KIWYIDQMLKVLSEAGNFVKDEVW 385 (812)
Q Consensus 329 v~eLl~yl~-----------~--~d---------~~~~~~li~~I~~la~k~~~~-~~w~vd~ll~lL~~~g~~v~~e~i 385 (812)
++.|+..+. + .| -..|......++.++..++.. ..-.+..+.+.+......++..++
T Consensus 301 ~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~ 380 (852)
T 4fdd_A 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI 380 (852)
T ss_dssp HHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777777662 1 01 124777888888888877532 123444444555544456666676
Q ss_pred HHHHHHHHhCCC----cHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHH
Q 045023 386 HALIVVISNASD----LHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIA 461 (812)
Q Consensus 386 ~~i~~li~~~p~----l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~ 461 (812)
..+-.+....++ ....++..++..+.+ ....++..++|++|+|+..+.... ...--..++..+...
T Consensus 381 ~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~--------~~~~~~~ll~~L~~~ 450 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQP--------PDTYLKPLMTELLKR 450 (852)
T ss_dssp HHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHSC--------TTTTHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccch--------HHHHHHHHHHHHHHH
Confidence 666666543322 223455555555553 345678889999999997653211 001123455544444
Q ss_pred HhccCCCHHHHHHHHHHHHHHHccC
Q 045023 462 IKHHSSDITTKAMAMVALLKLSSRF 486 (812)
Q Consensus 462 l~~~~~~~~vk~~iLtAl~KL~~r~ 486 (812)
+.. ..+.+|..+..|+..+....
T Consensus 451 L~d--~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 451 ILD--SNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HTC--SSHHHHHHHHHHHHHHHHHH
T ss_pred HhC--CCHHHHHHHHHHHHHHHHHh
Confidence 443 36899999999999887544
No 16
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.04 E-value=7.3e-09 Score=122.47 Aligned_cols=382 Identities=11% Similarity=0.148 Sum_probs=245.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-CChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHHHHHHHHh
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-HFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQ 112 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L~~Nsl~k 112 (812)
+..+++.+.++++..|..++.-|-.+. +.++ ......+.+++.+++...||-+.+++..++..+||+.--..+.+++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 456788888888888877766554442 1111 2335677788999999999999999999888888876656677788
Q ss_pred hcCCCCHhHHHHHHHHHhccCc--hh---hHHHHHHHHHHhccC---------------CCcceeccC--------CC--
Q 045023 113 DLNHTNQYIVGLALCALGNICS--AE---MARDLAPEVERLLQF---------------RDPNIRKKP--------KC-- 162 (812)
Q Consensus 113 DL~s~n~~i~~lAL~~Ls~I~~--~e---~~~~l~~~V~~ll~~---------------~~pyVRKkA--------~~-- 162 (812)
=|.++|+.|++.|+.+|+.|+. ++ ....+.|.+.++|.+ .+|..+-++ +.
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 8889999999999999999875 33 233344544444432 244443221 00
Q ss_pred --chhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHH
Q 045023 163 --LDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECV 240 (812)
Q Consensus 163 --v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v 240 (812)
...+.+.|..++... +.....++.......+.+..+.. ++...+...+.|..++.+ ..+-|-|-++
T Consensus 267 ~~~~~~~~~L~~l~~~~-----~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~------~d~~vr~~aL 334 (618)
T 1w63_A 267 DSSEAMNDILAQVATNT-----ETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLN------NDKNIRYVAL 334 (618)
T ss_dssp HHHHTTHHHHHHHHHTS-----CCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTC------SSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhC------CCCchHHHHH
Confidence 011122222222110 00111234455566666665543 232222233444444432 2345666666
Q ss_pred HHHHhcCC-ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHh
Q 045023 241 ETIMSIED-NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLL 319 (812)
Q Consensus 241 ~~i~~i~~-~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l 319 (812)
.++..+.. .+.+.......+...|.+.|..+|-.+|+.|..++.... +..-...++..+.+.|..+|+.++.-+..+
T Consensus 335 ~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~iv~eL~~~l~~~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 335 TSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRGMMKELLYFLDSCEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66665532 333333344566677888999999999999999986532 222234556667788999999999999999
Q ss_pred cCC--CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCC
Q 045023 320 VNE--SNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASD 397 (812)
Q Consensus 320 ~n~--~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~ 397 (812)
+.. .+....++.|++.++..+..++.+++..+..+..+++...+..+..+.+++...-. .+.....++.++.++.+
T Consensus 413 a~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~--~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 413 AEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYS--QQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCS--CSHHHHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHhhhHH
Confidence 874 78999999999999988878899999999999999998888899999998886311 12233345555554422
Q ss_pred c---------------HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccc
Q 045023 398 L---------------HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 398 l---------------~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~ 433 (812)
. -..++..|...+.........+..++|.++.++-.
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 1 12233444444432234556788899999888754
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.93 E-value=7.2e-08 Score=117.00 Aligned_cols=397 Identities=13% Similarity=0.106 Sum_probs=229.9
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCC-C----------------chhHHHH
Q 045023 107 TNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPK-C----------------LDGLVKT 169 (812)
Q Consensus 107 ~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~-~----------------v~~lv~~ 169 (812)
+..+.++|.++++.++..|++.+..+...++....++.+.++|.+.++.||.+|- + .+.++..
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 3567777888888888888888877766677777888888888888888888870 0 1122222
Q ss_pred HHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHH-----HHHHHHHhhccccCCCCcchHHHHHHHHHH
Q 045023 170 LRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCM-----NDILAQVATKTESNKNAGNAILYECVETIM 244 (812)
Q Consensus 170 L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l-----~diL~~v~~~~~~~kn~~~aVl~e~v~~i~ 244 (812)
|-+++.+ ..++-.+....+.|+.+...... .+.+ ...|-.++. +....|.++|+.++.
T Consensus 197 Lv~~L~~----------~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~------~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 197 IVRTMQN----------TNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLG------SPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHH----------CCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHH
T ss_pred HHHHHcC----------CCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 2222211 12455666667777666543211 1111 122222322 224678888888887
Q ss_pred hcCCC-hhHH-----HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH------------------------------
Q 045023 245 SIEDN-GGLR-----VLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQ------------------------------ 288 (812)
Q Consensus 245 ~i~~~-~~L~-----~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~------------------------------ 288 (812)
.+... ...+ .-++..|..+|.+.+..++..++..|..+...+++
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a 339 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Confidence 77432 1111 13456777777776667777776666555432211
Q ss_pred ----------------HHHH-hHhhhcccccccCHhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhcCHHHHHHH
Q 045023 289 ----------------AVQR-HRATILECVKDLDASIRKRALELVYLLVNES----NVKPLTKELIDYLEISDQEFKGDL 347 (812)
Q Consensus 289 ----------------~v~~-h~~~i~~cL~d~D~sIr~~aLell~~l~n~~----Nv~~Iv~eLl~yl~~~d~~~~~~l 347 (812)
+++. -...++.++.+.+..+++.++..|..|+... ....+++.|...+...+.+.+..+
T Consensus 340 ~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A 419 (780)
T 2z6g_A 340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA 419 (780)
T ss_dssp HHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHH
Confidence 0110 1244566788888889999999988887543 467788888888888899999999
Q ss_pred HHHHHHHHhhhCCch-----hHHHHHHHHHHhhcCc--cchHHHHHHHHHHHHhCCCc---HH-----HHHHHHHHHHhh
Q 045023 348 TAKICSMVEKFSPDK-----IWYIDQMLKVLSEAGN--FVKDEVWHALIVVISNASDL---HG-----YTVRALYRAVQT 412 (812)
Q Consensus 348 i~~I~~la~k~~~~~-----~w~vd~ll~lL~~~g~--~v~~e~i~~i~~li~~~p~l---~~-----~~v~~L~~~l~~ 412 (812)
+..++.++....... .-.+..++++|...++ .+...++..+..+....++. +. .++..|...+..
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 999998875321111 1257788888877543 46666666666665444442 11 224455555553
Q ss_pred ccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc--------------------CCCHHHH
Q 045023 413 SIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH--------------------SSDITTK 472 (812)
Q Consensus 413 ~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~--------------------~~~~~vk 472 (812)
.....++..++|++|..+..-.+. ..+-+..++..|..++... ....+++
T Consensus 500 -~~~~~v~~~A~~aL~nLa~~~~~~---------~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~ 569 (780)
T 2z6g_A 500 -PSHWPLIKATVGLIRNLALCPANH---------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569 (780)
T ss_dssp -TCCHHHHHHHHHHHHHHHSSHHHH---------HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred -CChHHHHHHHHHHHHHHhcCHHHH---------HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence 233467889999999886421110 0111223444444444321 0125678
Q ss_pred HHHHHHHHHHHccCCCChHHH-----HHHHHHhhCCCChHHHHHHHHHHHHhccCHHHHHHhhh
Q 045023 473 AMAMVALLKLSSRFPSCSERI-----RDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRSTLVE 531 (812)
Q Consensus 473 ~~iLtAl~KL~~r~p~~~~~i-----~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ll~ 531 (812)
..++.|+..|+. .+.....+ ...|.....+.+.++|..|.....-+..+++.+..+.+
T Consensus 570 ~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~ 632 (780)
T 2z6g_A 570 EACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632 (780)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888888873 33222222 23455556678999999998765555455555555443
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.92 E-value=2.2e-07 Score=104.01 Aligned_cols=314 Identities=12% Similarity=0.071 Sum_probs=176.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-------C-ChhHHHHHhhccC-CCCchhHHHHHHHHhcccchhHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-------H-FGQMECLKSIASA-GFPEKRIGYLGLMLLLDERQEVLM 104 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~-~~~~evikli~s~-~~~~KRlgYL~~~~ll~~~~el~~ 104 (812)
+..+-+.+++++...|..++..|-.+...+.+. . .+....++++.++ +...++-+.-++..+...+++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344455566666666666665555544432221 1 3455556777777 677777777777776654433211
Q ss_pred -----HHHHHHHhhcCCCCHhHHHHHHHHHhccCch--hhH-----HHHHHHHHHhccC-CCcceeccCCCchhHHHHHH
Q 045023 105 -----LVTNSLKQDLNHTNQYIVGLALCALGNICSA--EMA-----RDLAPEVERLLQF-RDPNIRKKPKCLDGLVKTLR 171 (812)
Q Consensus 105 -----L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~--e~~-----~~l~~~V~~ll~~-~~pyVRKkA~~v~~lv~~L~ 171 (812)
-++..|.+=|.++++.+|..|+.+|++++.. +.. ..+++.+.+++.+ .++.||+.| +..|.
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a------~~~L~ 175 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA------VWALS 175 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH------HHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH------HHHHH
Confidence 1456777778899999999999999999653 222 2467888888885 688888877 33333
Q ss_pred HHhcCC-CCCccc-----------cccCCChhHHHHHHHHHHhcCCCCchhhhHHH--HHHHHHhhccccCCCCcchHHH
Q 045023 172 DVVNSP-YAPEYD-----------IAGITDPFLHIRLLKLLHVLGQGDADASDCMN--DILAQVATKTESNKNAGNAILY 237 (812)
Q Consensus 172 ~L~~~~-~~pe~~-----------~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~--diL~~v~~~~~~~kn~~~aVl~ 237 (812)
.+.... ..+... .....++..+...+..|..++...++..+.+. .++..+..-. ++....|..
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~ 252 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL---MHNDYKVVS 252 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT---TCSCHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH---CCCchhHHH
Confidence 333211 011000 11123566666677777777654433222111 1111111111 122345666
Q ss_pred HHHHHHHhcCCC-hhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCH
Q 045023 238 ECVETIMSIEDN-GGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDA 306 (812)
Q Consensus 238 e~v~~i~~i~~~-~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~ 306 (812)
.|+.++..+... +.... .++..|..+|.+.++.+|.-|+..|..++...+...+. -...++.+|.+++.
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 666666665432 11111 24556666666666777777777777776544433321 22345556666677
Q ss_pred hHHHHHHHHHHHhcCC---CCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 307 SIRKRALELVYLLVNE---SNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 307 sIr~~aLell~~l~n~---~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
.+|+.|...+..++.. .+++. +++.|...+...+.+++..++..|..++.
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777777777666532 23332 44555666666666677666666666664
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.85 E-value=1.1e-07 Score=109.87 Aligned_cols=330 Identities=14% Similarity=0.126 Sum_probs=200.0
Q ss_pred ChhHHHHHhhccCCCCchhHHHHHHHHhccc--chhHHHH----HHHHHHhhcCCC-CHhHHHHHHHHHhccCc--hhhH
Q 045023 68 FGQMECLKSIASAGFPEKRIGYLGLMLLLDE--RQEVLML----VTNSLKQDLNHT-NQYIVGLALCALGNICS--AEMA 138 (812)
Q Consensus 68 ~~~~evikli~s~~~~~KRlgYL~~~~ll~~--~~el~~L----~~Nsl~kDL~s~-n~~i~~lAL~~Ls~I~~--~e~~ 138 (812)
......++.+.+++...++.+-.++..++.. ++..-.+ ++..|.+-|.++ ++.++..|+.+|++|+. ++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4456666666666666666666666655432 2221111 234555556665 66777777777777655 2222
Q ss_pred HHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHH--H
Q 045023 139 RDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMN--D 216 (812)
Q Consensus 139 ~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~--d 216 (812)
..+.. +..++.|++.|+. .++..+...+..|..++..++...+.+. .
T Consensus 167 ~~~~~----------------~g~i~~Lv~lL~~---------------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~ 215 (530)
T 1wa5_B 167 KVVVD----------------ADAVPLFIQLLYT---------------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCN 215 (530)
T ss_dssp HHHHH----------------TTCHHHHHHHHHH---------------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHH----------------CCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHHhCCCccchHHHHHcC
Confidence 21100 0122333333221 2455556666666666554433322211 1
Q ss_pred HHHHHhhccccCCCCcchHHHHHHHHHHhcCCC--h----hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH
Q 045023 217 ILAQVATKTESNKNAGNAILYECVETIMSIEDN--G----GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV 290 (812)
Q Consensus 217 iL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~--~----~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v 290 (812)
++..+..-.. +....|...++.++..+... + .....++..|..+|.+.+.+++..++..|..++...+..+
T Consensus 216 ~l~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 292 (530)
T 1wa5_B 216 AMEPILGLFN---SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292 (530)
T ss_dssp CHHHHHHGGG---SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhc---cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 1222221111 13456777777777765421 1 1223457788888999999999999999999998766544
Q ss_pred HH-----hHhhhcccccccCHhHHHHHHHHHHHhcCCCC--HH-----HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhh
Q 045023 291 QR-----HRATILECVKDLDASIRKRALELVYLLVNESN--VK-----PLTKELIDYLEISDQEFKGDLTAKICSMVEKF 358 (812)
Q Consensus 291 ~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N--v~-----~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~ 358 (812)
+. ....++.+|.+.+..+|..|+..+..++.... .. .+++.|+..+...+..++..++..|+.++...
T Consensus 293 ~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 293 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372 (530)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 32 34567888999999999999999999986432 22 35677888888889999999999999998532
Q ss_pred CCch-----hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC-C--CcHHH-----HHHHHHHHHhhccchHHHHHHHHH
Q 045023 359 SPDK-----IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA-S--DLHGY-----TVRALYRAVQTSIEQESLVRVAIW 425 (812)
Q Consensus 359 ~~~~-----~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~-p--~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~W 425 (812)
.... .-.+..++++|......+..+++..+..+.... + +...+ ++..|+..+.. ....++..++|
T Consensus 373 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~ 450 (530)
T 1wa5_B 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI--ADNRIIEVTLD 450 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT--CCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHH
Confidence 1111 124567888887766677888888888887653 3 33333 34556666553 24457888899
Q ss_pred hhhhcccc
Q 045023 426 CIGEYGDM 433 (812)
Q Consensus 426 iiGEY~~~ 433 (812)
.++.+...
T Consensus 451 aL~~l~~~ 458 (530)
T 1wa5_B 451 ALENILKM 458 (530)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877643
No 20
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.84 E-value=1.7e-05 Score=96.33 Aligned_cols=476 Identities=9% Similarity=0.056 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCC---CCChhHHHHHhhccC-CCCchhHHHHHHHHhccc-
Q 045023 24 AEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYP---THFGQMECLKSIASA-GFPEKRIGYLGLMLLLDE- 98 (812)
Q Consensus 24 ~eEr~~i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~---~~~~~~evikli~s~-~~~~KRlgYL~~~~ll~~- 98 (812)
++++..|+..+ -..+.+++...|.....-+-.+....++ -.......+.++.++ +...|..+...+..++++
T Consensus 90 ~~~~~~ik~~l---l~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 90 PEAKNQIKTNA---LTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHH---HHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH---HHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45555665544 2345666655544333222222222222 233455666677776 655555554444444332
Q ss_pred --c----hhHHHHHHHHHHhhcCCC--CHhHHHHHHHHHhccC---chhh-----HHHHHHHHHHhccCCCcceeccC-C
Q 045023 99 --R----QEVLMLVTNSLKQDLNHT--NQYIVGLALCALGNIC---SAEM-----ARDLAPEVERLLQFRDPNIRKKP-K 161 (812)
Q Consensus 99 --~----~el~~L~~Nsl~kDL~s~--n~~i~~lAL~~Ls~I~---~~e~-----~~~l~~~V~~ll~~~~pyVRKkA-~ 161 (812)
. ....--+...+.+-+.++ ++.+|..|+++++.+. ...+ ...+.+.+.+.+.+.++-+|+.| +
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1 122333445555566776 8999999999998742 2121 24577778888888999999887 1
Q ss_pred CchhHHH--------HHH-HHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCC-----------------ch-hhhHH
Q 045023 162 CLDGLVK--------TLR-DVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGD-----------------AD-ASDCM 214 (812)
Q Consensus 162 ~v~~lv~--------~L~-~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~-----------------~~-~~~~l 214 (812)
+...++. .+. .++.- -.......++-.....++++..++... +. ....+
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYAL----TIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI 322 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHH----HHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH
Confidence 1111111 111 11000 000001123333344444443332110 00 11122
Q ss_pred HHHHHHHhhccccC----CCCcchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-H
Q 045023 215 NDILAQVATKTESN----KNAGNAILYECVETIMSIED--NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD-A 287 (812)
Q Consensus 215 ~diL~~v~~~~~~~----kn~~~aVl~e~v~~i~~i~~--~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-p 287 (812)
..++..+....... -.....+...+..++..+.. ........+..+...+.+.+...|..++..|..++... +
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~ 402 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH
Confidence 23333332211000 00123454555555544321 12333445566667777888899999999999998653 4
Q ss_pred HHHHHhHhh----hcccccccCHhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 045023 288 QAVQRHRAT----ILECVKDLDASIRKRALELVYLLV--------NESNVKPLTKELIDYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 288 ~~v~~h~~~----i~~cL~d~D~sIr~~aLell~~l~--------n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la 355 (812)
..+.+|... ++.+++|++..+|..++..+-.++ .......+++.|+..+... +..+..++.++..++
T Consensus 403 ~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 656655443 556788999999999988877665 3567899999999998764 889999999999888
Q ss_pred hhhC--------CchhHHHHHHHHHHhhcC--ccchHHHHHHHHHHHHhCCCc-HHH---HHHHHHHHHhhc--------
Q 045023 356 EKFS--------PDKIWYIDQMLKVLSEAG--NFVKDEVWHALIVVISNASDL-HGY---TVRALYRAVQTS-------- 413 (812)
Q Consensus 356 ~k~~--------~~~~w~vd~ll~lL~~~g--~~v~~e~i~~i~~li~~~p~l-~~~---~v~~L~~~l~~~-------- 413 (812)
+.+. +...-.+..+++++.... ..+...+...+..++...++- ..| .+..++..+.+.
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 7754 223344556666665322 456777777777787766643 222 233344444421
Q ss_pred -----cchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHccCC
Q 045023 414 -----IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDI-TTKAMAMVALLKLSSRFP 487 (812)
Q Consensus 414 -----~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~-~vk~~iLtAl~KL~~r~p 487 (812)
.....++..+++++|.....+.. .+.+ --+.++..+..++... .. .+|..++.++..++....
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~-------~~~~l~~~l~~~l~~~--~~~~v~~~~~~~l~~l~~~~~ 630 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPS--SVEP-------VADMLMGLFFRLLEKK--DSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGG-------GHHHHHHHHHHHHHST--TGGGTHHHHHHHHHHHHHHHG
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHH-------HHHHHHHHHHHHHccC--CCCcHHHHHHHHHHHHHHHHh
Confidence 11234556788888877654321 1100 0124555555555542 23 678888888877776543
Q ss_pred C-C---hHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 045023 488 S-C---SERIRDIIVQNKGSLVLELQQRSIEFNSI 518 (812)
Q Consensus 488 ~-~---~~~i~~ll~~~~~s~~~evqqRA~ey~~L 518 (812)
+ . .+.+...+..+.++.+.++|..|.....-
T Consensus 631 ~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~ 665 (861)
T 2bpt_A 631 KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIAD 665 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2 1 23444444444467888999988876543
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.83 E-value=2.8e-07 Score=103.26 Aligned_cols=309 Identities=14% Similarity=0.095 Sum_probs=207.1
Q ss_pred hHHHHHhhccCCCCchhHHHHHHHHhcc--cchhHHH-----HHHHHHHhhcCCC-CHhHHHHHHHHHhccCc--hhhH-
Q 045023 70 QMECLKSIASAGFPEKRIGYLGLMLLLD--ERQEVLM-----LVTNSLKQDLNHT-NQYIVGLALCALGNICS--AEMA- 138 (812)
Q Consensus 70 ~~evikli~s~~~~~KRlgYL~~~~ll~--~~~el~~-----L~~Nsl~kDL~s~-n~~i~~lAL~~Ls~I~~--~e~~- 138 (812)
....++.+.+++...+..+..++..++. .++.+-. =++..+.+=|.+. ++.++..|+.+|++++. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4566778888888888888888776542 2332211 2345566666777 89999999999999865 3332
Q ss_pred ----HHHHHHHHHhccCCCcceeccCC-Cc----------------hhHHHHHHHHhcCCCCCccccccCCChhHHHHHH
Q 045023 139 ----RDLAPEVERLLQFRDPNIRKKPK-CL----------------DGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLL 197 (812)
Q Consensus 139 ----~~l~~~V~~ll~~~~pyVRKkA~-~v----------------~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL 197 (812)
..+++.+.+++.++++.||..|- +. ..++..|-.++.+ ..++-.+...+
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~v~~~a~ 171 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK----------QNRLTMTRNAV 171 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS----------CCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----------CCCHHHHHHHH
Confidence 34788899999999999998881 10 0122222222221 23566677788
Q ss_pred HHHHhcCCCC-chh----hhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHH-----HHHHHHHHHhhcC
Q 045023 198 KLLHVLGQGD-ADA----SDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLR-----VLAINILGRFLSN 266 (812)
Q Consensus 198 ~lL~~l~~~~-~~~----~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~-----~l~i~~L~~fL~~ 266 (812)
..|..++... +.. .......|..++. +....+...++.++..+... +... ..++..|..+|.+
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLF------VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc------cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC
Confidence 8888777543 221 1222233333333 23457888888888887643 2211 1256778888888
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHHHhcC--CCCHH-----HHHHHHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRALELVYLLVN--ESNVK-----PLTKELID 334 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~n--~~Nv~-----~Iv~eLl~ 334 (812)
.+..+|..++..|..++...+...+. -...++.+|.+++..+|+.|+..|..++. +.+.. .+++.|+.
T Consensus 246 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS 325 (450)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999877654332 33556778899999999999999999984 33443 35667888
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhhhCCch-h-----HHHHHHHHHHhhcCccchHHHHHHHHHHHHh
Q 045023 335 YLEISDQEFKGDLTAKICSMVEKFSPDK-I-----WYIDQMLKVLSEAGNFVKDEVWHALIVVISN 394 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k~~~~~-~-----w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~ 394 (812)
.+...+.++|..++..|+.++....+.. . -.+..+++++......+...++..+..++..
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999987543221 1 2456677777766556666666666666654
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.82 E-value=1.6e-06 Score=105.44 Aligned_cols=440 Identities=12% Similarity=0.114 Sum_probs=251.8
Q ss_pred HHHHHHHHH-ccCChHHHHHHHHHHHHHHHcCCCCCChhHHHHHhhcc--CCCCchhHHHHHHHHhccc-----------
Q 045023 33 ECAAIRAAI-NENDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKSIAS--AGFPEKRIGYLGLMLLLDE----------- 98 (812)
Q Consensus 33 E~a~Ir~~l-~~~~~~~r~~~l~KLiyl~~lG~~~~~~~~evikli~s--~~~~~KRlgYL~~~~ll~~----------- 98 (812)
++.++-... .++|...|+.+-..|--+.-. +.......++..+.+ .+...|..+-+++..+.+.
T Consensus 5 ~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 5 EFAQLLENSILSPDQNIRLTSETQLKKLSND--NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHcccCcCHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 444555556 777888888888877665432 112223455566654 3566788888887776532
Q ss_pred ------chhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhh----HHHHHHHHHHhccCC-CcceeccCCCchhHH
Q 045023 99 ------RQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEM----ARDLAPEVERLLQFR-DPNIRKKPKCLDGLV 167 (812)
Q Consensus 99 ------~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~----~~~l~~~V~~ll~~~-~pyVRKkA~~v~~lv 167 (812)
.++..--+-+.+..-|.++++.+|.-+-.+++.|...+. -+++++.+.+++.+. ++.+|..| +
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~a------l 156 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRAS------L 156 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHH------H
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHH------H
Confidence 122333334555556677788887777777777655442 356777788888776 77666554 4
Q ss_pred HHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhc-
Q 045023 168 KTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSI- 246 (812)
Q Consensus 168 ~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i- 246 (812)
..|..+... +.++.. . ....+..++..+...... ...+..|...+++++..+
T Consensus 157 ~~l~~l~~~-~~~~~~---~----------------------~~~~~~~ll~~l~~~l~~-~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 157 LALGYMCES-ADPQSQ---A----------------------LVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHT-SSTTSS---T----------------------TGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHc-CChhhh---H----------------------HHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHH
Confidence 444444432 112110 0 011122222222211100 001345666666665542
Q ss_pred ---CC---ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHh-hhc----ccccccCHhHHHHHHHH
Q 045023 247 ---ED---NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRA-TIL----ECVKDLDASIRKRALEL 315 (812)
Q Consensus 247 ---~~---~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~-~i~----~cL~d~D~sIr~~aLel 315 (812)
.. ...-+...+..|..++.+.+..+|..++..|..++...+..+..|.. .++ .++.|.|..+|..+++.
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 10 11112345667777788889999999999999999887766666655 443 46789999999999999
Q ss_pred HHHhcCCC-----------------------CHHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHHHhhhCCc-hhH
Q 045023 316 VYLLVNES-----------------------NVKPLTKELIDYLEIS-------DQEFKGDLTAKICSMVEKFSPD-KIW 364 (812)
Q Consensus 316 l~~l~n~~-----------------------Nv~~Iv~eLl~yl~~~-------d~~~~~~li~~I~~la~k~~~~-~~w 364 (812)
+..++... .+..++..|+..+... +...|..+...+..++..+... ..-
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~ 369 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP 369 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHH
Confidence 98887642 1256777777777642 2368888899999999887632 223
Q ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHhCC-C-cHH---HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCcc
Q 045023 365 YIDQMLKVLSEAGNFVKDEVWHALIVVISNAS-D-LHG---YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVG 439 (812)
Q Consensus 365 ~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p-~-l~~---~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~ 439 (812)
.+..+.+.+....-.+.+..+..+-.+..... + +.. .++..++..+.+ .+..++..++|++|.|+..+...
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~-- 445 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND--QSLQVKETTAWCIGRIADSVAES-- 445 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHhhhh--
Confidence 44444444444333455555555555543322 2 111 233334444432 34567888999999998765321
Q ss_pred ccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC----C----ChHHHHH-HHHHhhC-CCChHHH
Q 045023 440 VLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP----S----CSERIRD-IIVQNKG-SLVLELQ 509 (812)
Q Consensus 440 ~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p----~----~~~~i~~-ll~~~~~-s~~~evq 509 (812)
+.. ...-..++..+...+.. .+.+|.....++..+...+. + ..+.+.. ++..... +.+.++|
T Consensus 446 ~~~-----~~~~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr 517 (861)
T 2bpt_A 446 IDP-----QQHLPGVVQACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNAR 517 (861)
T ss_dssp SCT-----TTTHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHH
T ss_pred cCC-----HHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHH
Confidence 000 00123455544444443 37888888888877765432 1 1233333 3333332 4457888
Q ss_pred HHHHHHHHHh
Q 045023 510 QRSIEFNSIV 519 (812)
Q Consensus 510 qRA~ey~~Ll 519 (812)
..|.+...-+
T Consensus 518 ~~a~~al~~l 527 (861)
T 2bpt_A 518 ASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777655444
No 23
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.79 E-value=1.1e-07 Score=100.19 Aligned_cols=230 Identities=13% Similarity=0.068 Sum_probs=157.4
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccC-----------CCchhHHHHHHHHh
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKP-----------KCLDGLVKTLRDVV 174 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA-----------~~v~~lv~~L~~L~ 174 (812)
.++.+.+.|.|+|+.+|..|+.+|+.++.++. .+.+.+++.++++.||..| ..++.+++.|.+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~ 99 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 45778888999999999999999999997654 5567788899999999988 11233333333211
Q ss_pred cCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH
Q 045023 175 NSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV 254 (812)
Q Consensus 175 ~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~ 254 (812)
....+|+.....++.|..++..++...+.....|...+. +....|.+.++.++..+....
T Consensus 100 ----------~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~------d~~~~vR~~a~~aL~~~~~~~---- 159 (280)
T 1oyz_A 100 ----------LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF------DKSTNVRRATAFAISVINDKA---- 159 (280)
T ss_dssp ----------HHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT------CSCHHHHHHHHHHHHTC---C----
T ss_pred ----------hcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh------CCCHHHHHHHHHHHHhcCCHH----
Confidence 123567778888888887765443333333344433332 345778889998888876532
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045023 255 LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELID 334 (812)
Q Consensus 255 l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~ 334 (812)
++..|..+|.+.++.+|+.++..|..+....+.++. .++.+++|+|..+|..|+..|..+.++.-+..++ .
T Consensus 160 -~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~----~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~----~ 230 (280)
T 1oyz_A 160 -TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD----CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLC----D 230 (280)
T ss_dssp -CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHH----HHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHH----H
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHH----HHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHH----H
Confidence 456677788888899999999999887555566553 3556788999999999999999988776555544 4
Q ss_pred HhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc
Q 045023 335 YLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA 376 (812)
Q Consensus 335 yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~ 376 (812)
.+.+ +++|..++.+++.+... -.+..+.+++...
T Consensus 231 ~l~d--~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 231 ELKK--NTVYDDIIEAAGELGDK------TLLPVLDTMLYKF 264 (280)
T ss_dssp HHTS--SSCCHHHHHHHHHHCCG------GGHHHHHHHHTTS
T ss_pred HhcC--ccHHHHHHHHHHhcCch------hhhHHHHHHHhcC
Confidence 4443 34888888888777542 3556666666543
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.79 E-value=2.3e-07 Score=107.17 Aligned_cols=359 Identities=14% Similarity=0.111 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-------CChhHHHHHhhccC-CCCchhHHHHHHHHhcccchh
Q 045023 30 VRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-------HFGQMECLKSIASA-GFPEKRIGYLGLMLLLDERQE 101 (812)
Q Consensus 30 i~~E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~~~~~evikli~s~-~~~~KRlgYL~~~~ll~~~~e 101 (812)
...++..+-+.+++++...+..++..|-.+...+.+- ..+....++++.++ +...+..+..++..+....++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4445777788888888888888877776664443222 24556677788876 677788787788777765544
Q ss_pred HHHH-----HHHHHHhhcCCCCHhHHHHHHHHHhccCch--hhH-----HHHHHHHHHhccCCCcceeccCCCchhHHHH
Q 045023 102 VLML-----VTNSLKQDLNHTNQYIVGLALCALGNICSA--EMA-----RDLAPEVERLLQFRDPNIRKKPKCLDGLVKT 169 (812)
Q Consensus 102 l~~L-----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~--e~~-----~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~ 169 (812)
..-. ++..|.+=|.++++.++..|+.+|++|+.. +.. ..+++.+.+++.+.++.||+.| +..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a------~~~ 238 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA------TWT 238 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH------HHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH------HHH
Confidence 3222 245566666678999999999999999653 222 2367888999998888888776 444
Q ss_pred HHHHhcCC-CCCccc-----------cccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHH
Q 045023 170 LRDVVNSP-YAPEYD-----------IAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILY 237 (812)
Q Consensus 170 L~~L~~~~-~~pe~~-----------~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~ 237 (812)
|..+.... ..+.+. .....++..+...+..|..++...++..+.+
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~----------------------- 295 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV----------------------- 295 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH-----------------------
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHH-----------------------
Confidence 44444321 111110 0111233334444444444433222111111
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH-----HhHhhhcccccccCHhHHHHH
Q 045023 238 ECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ-----RHRATILECVKDLDASIRKRA 312 (812)
Q Consensus 238 e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~-----~h~~~i~~cL~d~D~sIr~~a 312 (812)
+. .-++..|..+|.+.+..+|..++..|..++..++...+ .....++.+|.+++..+|..|
T Consensus 296 ------~~--------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A 361 (530)
T 1wa5_B 296 ------ID--------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361 (530)
T ss_dssp ------HH--------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred ------Hh--------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHH
Confidence 10 01233444444444555555555555555543332211 122344455555556666666
Q ss_pred HHHHHHhcC--CCCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCC--ch------hHHHHHHHHHHhhcC
Q 045023 313 LELVYLLVN--ESNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSP--DK------IWYIDQMLKVLSEAG 377 (812)
Q Consensus 313 Lell~~l~n--~~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~--~~------~w~vd~ll~lL~~~g 377 (812)
+..|..++. ..++.. +++.|+..+...+.+++..++..|+.++....+ .. .-.+..++.++....
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 441 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 666665552 222222 234555555555566666666666666543322 11 013455555555544
Q ss_pred ccchHHHHHHHHHHHHhCCC---------------cH-HHHHHHHHHHHhhccchHHHHHHHHHhhhhcccc
Q 045023 378 NFVKDEVWHALIVVISNASD---------------LH-GYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 378 ~~v~~e~i~~i~~li~~~p~---------------l~-~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~ 433 (812)
..+...+...+..++...+. +. ...+.+|..... + ....+...+.|+|..|...
T Consensus 442 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~-~-~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 442 NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ-N-ENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG-C-SCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc-C-CCHHHHHHHHHHHHHHCCc
Confidence 44555555455444432211 00 013455554333 2 3344667778888777644
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.77 E-value=4.7e-07 Score=104.36 Aligned_cols=366 Identities=12% Similarity=0.095 Sum_probs=229.2
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHhccCchh---hHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccc
Q 045023 107 TNSLKQDLNHTNQYIVGLALCALGNICSAE---MARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYD 183 (812)
Q Consensus 107 ~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e---~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~ 183 (812)
+..+.+-|.++++.++-.|+.+|+++.+.+ ..+.+ .. +..+|.|++.| .+.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~-------~~---------~g~v~~Lv~lL----~~~------ 129 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEV-------IQ---------SGVVPRFVQFL----TRE------ 129 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHH-------HH---------TTCHHHHHHHH----TCT------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHH-------HH---------CCCHHHHHHHh----CCC------
Confidence 455666778889999999988888763211 11110 00 01233333322 111
Q ss_pred cccCCChhHHHHHHHHHHhcCCCCchhhhHHH-----HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHHH--
Q 045023 184 IAGITDPFLHIRLLKLLHVLGQGDADASDCMN-----DILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRVL-- 255 (812)
Q Consensus 184 ~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~-----diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~l-- 255 (812)
.+|-.|...+..|..++..+++....+. ..|-.++. +....|...|+.++..+..+ +..+..
T Consensus 130 ----~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 130 ----DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG------SSSDDVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp ----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc------CCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 1245566666666666665444332221 22222332 23457788888888777533 332222
Q ss_pred ---HHHHHHHhh-cCCCcchHHHHHHHHHHHHhhCH----HHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHH-
Q 045023 256 ---AINILGRFL-SNRDNNIRYVALNMLMKAITVDA----QAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVK- 326 (812)
Q Consensus 256 ---~i~~L~~fL-~~~d~niryvaL~~L~~l~~~~p----~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~- 326 (812)
++..|..+| .+.+..++..++.+|..++...| ..+......++.+|.+.|..++..++..|..++...+-.
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 356777778 56788999999999999987542 334445566778899999999999999999999765532
Q ss_pred -H-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh-----HHHHHHHHHHhhc-CccchHHHHHHHHHHHHh
Q 045023 327 -P-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI-----WYIDQMLKVLSEA-GNFVKDEVWHALIVVISN 394 (812)
Q Consensus 327 -~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~-----w~vd~ll~lL~~~-g~~v~~e~i~~i~~li~~ 394 (812)
. +++.|...+...+.+++..++..|+.++........ -.+..++++|... ...+..+++..+..+...
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 2 467888888888999999999999999863222111 2467888888877 666777777777777765
Q ss_pred CCCcHH-----HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCH
Q 045023 395 ASDLHG-----YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDI 469 (812)
Q Consensus 395 ~p~l~~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~ 469 (812)
.++... .++..|+..+... ...++..++|++|..+.... .... ..+-+..++..|..++.. .++
T Consensus 360 ~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~-~~~~------~~l~~~~~i~~L~~lL~~--~d~ 428 (528)
T 4b8j_A 360 NKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGS-HDQI------KYLVSEGCIKPLCDLLIC--PDI 428 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSC-HHHH------HHHHHTTCHHHHHHGGGC--SCH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCC-HHHH------HHHHHCCCHHHHHHHHcC--CCH
Confidence 544322 2345667777642 45678899999997754310 0000 000012344555555653 467
Q ss_pred HHHHHHHHHHHHHHccCCC-----------ChHHH-----HHHHHHhhCCCChHHHHHHHHHHH-Hh
Q 045023 470 TTKAMAMVALLKLSSRFPS-----------CSERI-----RDIIVQNKGSLVLELQQRSIEFNS-IV 519 (812)
Q Consensus 470 ~vk~~iLtAl~KL~~r~p~-----------~~~~i-----~~ll~~~~~s~~~evqqRA~ey~~-Ll 519 (812)
.++..++.++..+....+. ....+ .+.+....++.|.+++++|..... +|
T Consensus 429 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 429 RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 8999999999888754321 11122 245566778899999999988664 44
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.77 E-value=3.1e-05 Score=94.17 Aligned_cols=478 Identities=10% Similarity=0.064 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHHHHHHccCChHH--HHHHHHHHHHHHHcCCCCCChhHHHHHhhccC--CCCchhHHHHHHHHhcccc
Q 045023 24 AEERAVVRKECAAIRAAINENDQDY--RHRNLAKLMFIHMLGYPTHFGQMECLKSIASA--GFPEKRIGYLGLMLLLDER 99 (812)
Q Consensus 24 ~eEr~~i~~E~a~Ir~~l~~~~~~~--r~~~l~KLiyl~~lG~~~~~~~~evikli~s~--~~~~KRlgYL~~~~ll~~~ 99 (812)
++++..|+..+ -..+.+.+... -...+..+................++.++.++ +...|+.+...+..+++.-
T Consensus 85 ~~~~~~ik~~l---l~~l~~~~~~~~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (876)
T 1qgr_A 85 ANARREVKNYV---LHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (876)
T ss_dssp HHHHHHHHHHH---HHHTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH---HHHhCCCcHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44555555543 23344443322 22333343333222133456677777888887 6666666666665554431
Q ss_pred -h----hHHHHHHHHHHhhcCCC--CHhHHHHHHHHHhccCc---hhh-----HHHHHHHHHHhccCCCcceeccCCCch
Q 045023 100 -Q----EVLMLVTNSLKQDLNHT--NQYIVGLALCALGNICS---AEM-----ARDLAPEVERLLQFRDPNIRKKPKCLD 164 (812)
Q Consensus 100 -~----el~~L~~Nsl~kDL~s~--n~~i~~lAL~~Ls~I~~---~e~-----~~~l~~~V~~ll~~~~pyVRKkA~~v~ 164 (812)
+ +..--+...+.+-+.++ ++.+|..|+++++.+.. ..+ ...+.+.+.+.+.+.++.||+.|
T Consensus 162 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a---- 237 (876)
T 1qgr_A 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA---- 237 (876)
T ss_dssp CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH----
T ss_pred CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH----
Confidence 2 22333445556666665 78999999999988642 121 12467777778888888898877
Q ss_pred hHHHHHHHHhcCC---CCC----c-c----ccccCCChhHHHHHHHHHHhcCCCC---------------------chh-
Q 045023 165 GLVKTLRDVVNSP---YAP----E-Y----DIAGITDPFLHIRLLKLLHVLGQGD---------------------ADA- 210 (812)
Q Consensus 165 ~lv~~L~~L~~~~---~~p----e-~----~~~~~~dpwlqv~lL~lL~~l~~~~---------------------~~~- 210 (812)
++.|..++... +.| . + ......++-.....++++..++... ...
T Consensus 238 --~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (876)
T 1qgr_A 238 --LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (876)
T ss_dssp --HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHH
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHH
Confidence 11111111100 000 0 0 0011123333333333333332110 000
Q ss_pred hhHHHHHHHHHhhcc---cc-CCCCcchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 045023 211 SDCMNDILAQVATKT---ES-NKNAGNAILYECVETIMSIED--NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAIT 284 (812)
Q Consensus 211 ~~~l~diL~~v~~~~---~~-~kn~~~aVl~e~v~~i~~i~~--~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~ 284 (812)
...+..++..+.... +. .-.....+...+..++-.+.. ........+..+...+.+.+..+|+.++..|..++.
T Consensus 316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 011222332222111 00 001122344444444333211 122334456666677788899999999999998886
Q ss_pred hC-HHHHHHhH----hhhcccccccCHhHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q 045023 285 VD-AQAVQRHR----ATILECVKDLDASIRKRALELVYLLVN--------ESNVKPLTKELIDYLEISDQEFKGDLTAKI 351 (812)
Q Consensus 285 ~~-p~~v~~h~----~~i~~cL~d~D~sIr~~aLell~~l~n--------~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I 351 (812)
.. |+.+..|. ..++.+++|++..+|..|+..+..++. ...+..+++.|+..+.. +..++..++..+
T Consensus 396 ~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al 474 (876)
T 1qgr_A 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAF 474 (876)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Confidence 53 35555544 445677899999999999999987763 46788999999998876 478899999999
Q ss_pred HHHHhhhC------------------CchhHHHHHHHHHHhhcC---ccchHHHHHHHHHHHHhCCCcHHHHHHHHHH--
Q 045023 352 CSMVEKFS------------------PDKIWYIDQMLKVLSEAG---NFVKDEVWHALIVVISNASDLHGYTVRALYR-- 408 (812)
Q Consensus 352 ~~la~k~~------------------~~~~w~vd~ll~lL~~~g---~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~-- 408 (812)
+.++..+. |...-.+..+++++.... ..+...+...+-.++...++-....+..++.
T Consensus 475 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 554 (876)
T 1qgr_A 475 SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVI 554 (876)
T ss_dssp HHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHH
Confidence 98887643 333344455555554331 2355556666666666554322222233333
Q ss_pred --HHhhc----------cch---HHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHH
Q 045023 409 --AVQTS----------IEQ---ESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKA 473 (812)
Q Consensus 409 --~l~~~----------~~~---~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~ 473 (812)
.+... .+. ..+...++|+++.....+.. ..+. + --..++..+..+++.......++.
T Consensus 555 ~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~----~---~~~~l~~~l~~~l~~~~~~~~v~~ 626 (876)
T 1qgr_A 555 MERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDAL----Q---ISDVVMASLLRMFQSTAGSGGVQE 626 (876)
T ss_dssp HHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHH----T---THHHHHHHHHHHC-----CCHHHH
T ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhh----H---HHHHHHHHHHHHHHhccCCCCccH
Confidence 22210 111 23456778888877654320 0000 0 012344544444443211136777
Q ss_pred HHHHHHHHHHccCC----CChHHHHHHHHHhhCC-CChHHHHHHHHHHHHh
Q 045023 474 MAMVALLKLSSRFP----SCSERIRDIIVQNKGS-LVLELQQRSIEFNSIV 519 (812)
Q Consensus 474 ~iLtAl~KL~~r~p----~~~~~i~~ll~~~~~s-~~~evqqRA~ey~~Ll 519 (812)
.++.++..++...+ ...+.+...+.....+ .+.++|+.|.....-+
T Consensus 627 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 78887777775432 2234444444444443 4889999988765544
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.75 E-value=9.3e-07 Score=101.86 Aligned_cols=360 Identities=13% Similarity=0.097 Sum_probs=216.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCC-CC------CChhHHHHHhhccCC-CCchhHHHHHHHHhcccchhHHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGY-PT------HFGQMECLKSIASAG-FPEKRIGYLGLMLLLDERQEVLML 105 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~-~~------~~~~~evikli~s~~-~~~KRlgYL~~~~ll~~~~el~~L 105 (812)
+..+-+.+.+++...+..+++.|-.+...+. +. ..+....++++.+++ ...+..+..++..+...+++....
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667777888788888777766655543332 11 234555677887766 677777777777777655554222
Q ss_pred -----HHHHHHhhcCCCCHhHHHHHHHHHhccCc--hhhHH-----HHHHHHHHhc-cCCCcceeccCCCchhHHHHHHH
Q 045023 106 -----VTNSLKQDLNHTNQYIVGLALCALGNICS--AEMAR-----DLAPEVERLL-QFRDPNIRKKPKCLDGLVKTLRD 172 (812)
Q Consensus 106 -----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--~e~~~-----~l~~~V~~ll-~~~~pyVRKkA~~v~~lv~~L~~ 172 (812)
++..|.+-|.++++.++..|+.+|++|+. ++... ..++.+.+++ .+.++.+|+.| +..|..
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a------~~~L~~ 229 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNA------TWTLSN 229 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHH------HHHHHH
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHH------HHHHHH
Confidence 45667777888899999999999999853 22111 2466677777 56667776665 444555
Q ss_pred HhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChh-
Q 045023 173 VVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGG- 251 (812)
Q Consensus 173 L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~- 251 (812)
|......+...+ .......|..++. +....|...++.++..+.....
T Consensus 230 L~~~~~~~~~~~--------------------------~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~ 277 (528)
T 4b8j_A 230 FCRGKPQPSFEQ--------------------------TRPALPALARLIH------SNDEEVLTDACWALSYLSDGTND 277 (528)
T ss_dssp HHCSSSCCCHHH--------------------------HTTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHcCCCCCcHHH--------------------------HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHH
Confidence 543321111100 0011112222221 1234455556666555543221
Q ss_pred HHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHh-----Hhhhccccccc-CHhHHHHHHHHHHHhc
Q 045023 252 LRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRH-----RATILECVKDL-DASIRKRALELVYLLV 320 (812)
Q Consensus 252 L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h-----~~~i~~cL~d~-D~sIr~~aLell~~l~ 320 (812)
... -++..|..+|.+.+..++.-|+.+|..++...+...+.. ...++.+|.++ +..+|+.|...|..|+
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 111 245677778888888889899998888887665443321 34466778887 8999999999998887
Q ss_pred CC--CCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh------HHHHHHHHHHhhcCccchHHHHHH
Q 045023 321 NE--SNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI------WYIDQMLKVLSEAGNFVKDEVWHA 387 (812)
Q Consensus 321 n~--~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~------w~vd~ll~lL~~~g~~v~~e~i~~ 387 (812)
.. ..+.. +++.|+..+...+.+++..++..|+.++..-.+... -.+..++++|......+...++..
T Consensus 358 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~ 437 (528)
T 4b8j_A 358 AGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEG 437 (528)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 42 22333 346677788878889999999999998865222211 245677777777655666666666
Q ss_pred HHHHHHhCCCc----------HHH------HHHHHHHHHhhccchHHHHHHHHHhhhhcccc
Q 045023 388 LIVVISNASDL----------HGY------TVRALYRAVQTSIEQESLVRVAIWCIGEYGDM 433 (812)
Q Consensus 388 i~~li~~~p~l----------~~~------~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~ 433 (812)
+..++...+.. ... .+.++.. +. ....+.+...+.|++..|.+.
T Consensus 438 L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~-L~-~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 438 LENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN-LQ-SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH-GG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH-HH-cCCCHHHHHHHHHHHHHHCCC
Confidence 66666533221 111 1222222 22 123456788889999888654
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.70 E-value=3.6e-06 Score=96.31 Aligned_cols=279 Identities=9% Similarity=0.040 Sum_probs=161.9
Q ss_pred chHHHHHHHHHHhcCCChhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH--HHHHhHhhhcccccccC
Q 045023 233 NAILYECVETIMSIEDNGGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQ--AVQRHRATILECVKDLD 305 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~--~v~~h~~~i~~cL~d~D 305 (812)
..+...+..++..+...+..+. -++..|..++.+.++.++.-++..|..+....+. .+......++.+++++|
T Consensus 200 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC
Confidence 3455666677666655443322 2467888888888899999999999988764321 22344566777889999
Q ss_pred HhHHHHHHHHHHHhcCCC--CHHH-----HHHHHHHHhhhc--CHHHHHHHHHHHHHHHhhhCCchhH--------HHHH
Q 045023 306 ASIRKRALELVYLLVNES--NVKP-----LTKELIDYLEIS--DQEFKGDLTAKICSMVEKFSPDKIW--------YIDQ 368 (812)
Q Consensus 306 ~sIr~~aLell~~l~n~~--Nv~~-----Iv~eLl~yl~~~--d~~~~~~li~~I~~la~k~~~~~~w--------~vd~ 368 (812)
..+|..+...|..|+..+ |... .++.|+..+... +.+.+..++..++.++...+.+..| .+..
T Consensus 280 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~ 359 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhH
Confidence 999999999999998753 4443 356677777653 3789999999999997644433223 3566
Q ss_pred HHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHhhccchHHHHHHHHHhhhh--cccccccCcc-
Q 045023 369 MLKVLSEAGN-FVKDEVWHALIVVISNASDLHG-----YTVRALYRAVQTSIEQESLVRVAIWCIGE--YGDMLVNNVG- 439 (812)
Q Consensus 369 ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGE--Y~~~l~~~~~- 439 (812)
++++|..... .+..+++..+..+.. .++.+. .++..|+..+.+ ....+++.++|.++. +.+-.. ...
T Consensus 360 L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~n~~~~~~~~-~~~i 435 (529)
T 1jdh_A 360 VVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVEGVR-MEEI 435 (529)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHH--HHHHHC-----------CBTTBC-HHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHHHHHHH--HhHHHHHHHhcccCchhhhcccc-HHHH
Confidence 7777776553 566666656665554 333333 345667776663 234467778888876 322100 000
Q ss_pred ----------cccc-CCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHH-----HHHHHHhhCC
Q 045023 440 ----------VLNI-EDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERI-----RDIIVQNKGS 503 (812)
Q Consensus 440 ----------~~~~-~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i-----~~ll~~~~~s 503 (812)
+... +....+.+..++..|..++.+ ..+.++.....++..+... ++....+ .+.|....+|
T Consensus 436 ~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~--~~~~v~~~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~ 512 (529)
T 1jdh_A 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHS 512 (529)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcC--CchHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcC
Confidence 0000 000000111233444444443 3578888888888887632 2222222 2456666788
Q ss_pred CChHHHHHHHHHHHH
Q 045023 504 LVLELQQRSIEFNSI 518 (812)
Q Consensus 504 ~~~evqqRA~ey~~L 518 (812)
.|.+||.+|..-..-
T Consensus 513 ~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 513 RNEGVATYAAAVLFR 527 (529)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999998875543
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.70 E-value=3.6e-06 Score=99.68 Aligned_cols=318 Identities=9% Similarity=0.083 Sum_probs=185.2
Q ss_pred HHHHHHHHHHhcCCCCchhhhHH-----HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHH-----HHHHHH
Q 045023 192 LHIRLLKLLHVLGQGDADASDCM-----NDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVL-----AINILG 261 (812)
Q Consensus 192 lqv~lL~lL~~l~~~~~~~~~~l-----~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l-----~i~~L~ 261 (812)
.+...++.|..++..+++....+ ...|-.++... ....+...+++++..+...+..+.. ++..|.
T Consensus 156 ~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 156 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230 (644)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-----ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 44555566666655443332222 12233333221 1235667778887777655443332 467888
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCHH--HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCC--CHHH-----HHHHH
Q 045023 262 RFLSNRDNNIRYVALNMLMKAITVDAQ--AVQRHRATILECVKDLDASIRKRALELVYLLVNES--NVKP-----LTKEL 332 (812)
Q Consensus 262 ~fL~~~d~niryvaL~~L~~l~~~~p~--~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~--Nv~~-----Iv~eL 332 (812)
.++.+.+..++..++..|..+....+. .+......++.+|++.|..+|..+...|..|+..+ |... .++.|
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 889888999999999999999865321 22334556677888999999999999999998753 3333 46677
Q ss_pred HHHhhhc-C-HHHHHHHHHHHHHHHhhhCCchh--------HHHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHH-
Q 045023 333 IDYLEIS-D-QEFKGDLTAKICSMVEKFSPDKI--------WYIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDLHG- 400 (812)
Q Consensus 333 l~yl~~~-d-~~~~~~li~~I~~la~k~~~~~~--------w~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~- 400 (812)
+.++... + .+++..++..|+.++...+.+.. -.+..++++|....+ .+..+++..+..+.. .++.+.
T Consensus 311 v~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~-~~~~~~~ 389 (644)
T 2z6h_A 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAP 389 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc-CHHHHHH
Confidence 7888764 3 78999999999999854332221 256778888876543 566666655655543 333322
Q ss_pred ----HHHHHHHHHHhhccchHHHHHHHHHhhhh--cccccccCccc-----------c-ccCCCCccChhhHHHHHHHHH
Q 045023 401 ----YTVRALYRAVQTSIEQESLVRVAIWCIGE--YGDMLVNNVGV-----------L-NIEDPITVTESDAVDVVEIAI 462 (812)
Q Consensus 401 ----~~v~~L~~~l~~~~~~~~l~~~~~WiiGE--Y~~~l~~~~~~-----------~-~~~~~~~v~~~~vi~~l~~~l 462 (812)
.++..|+..+... ....++-++|.++. |.+-... ..+ . .......+.....+..|..++
T Consensus 390 i~~~~~i~~Lv~lL~~~--~~~vr~~a~~al~n~~~~~~~~~-~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL 466 (644)
T 2z6h_A 390 LREQGAIPRLVQLLVRA--HQDTQRRTSMGGTQQQFVEGVRM-EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 466 (644)
T ss_dssp HHHTTHHHHHHHHHHHH--HHHHTTC----------CCSSCH-HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhcc--chhhhhHhhhccccchhcccccH-HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHH
Confidence 3456666666632 22345556777665 2211000 000 0 000000011122344454555
Q ss_pred hccCCCHHHHHHHHHHHHHHHccCCCChHHHH-----HHHHHhhCCCChHHHHHHHHHHHHhcc
Q 045023 463 KHHSSDITTKAMAMVALLKLSSRFPSCSERIR-----DIIVQNKGSLVLELQQRSIEFNSIVEK 521 (812)
Q Consensus 463 ~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~-----~ll~~~~~s~~~evqqRA~ey~~Ll~~ 521 (812)
.. ..+.++.....++.+++.. ++....+. +.|.....+.|.+||+.|..-..-+..
T Consensus 467 ~~--~~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 467 YS--PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp TC--SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cC--CCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 43 3578999999999998743 33223222 356666789999999999998887764
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.68 E-value=1.6e-06 Score=105.16 Aligned_cols=427 Identities=10% Similarity=0.072 Sum_probs=235.5
Q ss_pred hhHHHHHhhccCCCCchhHHHHHHHHhcccc---------hhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCch-h--
Q 045023 69 GQMECLKSIASAGFPEKRIGYLGLMLLLDER---------QEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSA-E-- 136 (812)
Q Consensus 69 ~~~evikli~s~~~~~KRlgYL~~~~ll~~~---------~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~-e-- 136 (812)
+....++++.+++...|+-+-.++..+.... ++.+-.++..+++ +.++.++-.|+.+|.++... +
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~---~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhH
Confidence 3455566666666666666555555544322 2333333333432 23677777777777776332 1
Q ss_pred --hHH-HHHHHHHHhccCCCcceeccCC-C----------------chhHHHHHHHHhcCCCCCccccccCCChhHHHHH
Q 045023 137 --MAR-DLAPEVERLLQFRDPNIRKKPK-C----------------LDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRL 196 (812)
Q Consensus 137 --~~~-~l~~~V~~ll~~~~pyVRKkA~-~----------------v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~l 196 (812)
+.+ ..++.+.++|.+.++.||+.|- + -...+..|-+++.+ .++-.+...
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-----------~~~~v~~~a 296 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-----------TNVKFLAIT 296 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-----------CCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-----------CCHHHHHHH
Confidence 211 2567777778877777777760 0 01222333333322 222234444
Q ss_pred HHHHHhcCCCCchhhhHH-----HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH-----HHHHHHHHhhcC
Q 045023 197 LKLLHVLGQGDADASDCM-----NDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV-----LAINILGRFLSN 266 (812)
Q Consensus 197 L~lL~~l~~~~~~~~~~l-----~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~-----l~i~~L~~fL~~ 266 (812)
+..|+.++..+++....+ ...|-.++... ....+...++.++..+...+..+. -++..|..+|.+
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~ 371 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcC
Confidence 455555554433322211 12222233211 122344455666655544333222 246788888988
Q ss_pred CCcchHHHHHHHHHHHHhhCHH--HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCC--CHHH-----HHHHHHHHhh
Q 045023 267 RDNNIRYVALNMLMKAITVDAQ--AVQRHRATILECVKDLDASIRKRALELVYLLVNES--NVKP-----LTKELIDYLE 337 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~--~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~--Nv~~-----Iv~eLl~yl~ 337 (812)
.+..++.-++..|..++...+. .+......++.+|++.|..+|..|...|..|+... |... .++.|+..+.
T Consensus 372 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 8888999999999998865421 12333455677888999999999999999998754 3322 4567777776
Q ss_pred hc-C-HHHHHHHHHHHHHHHhhhCCc--hh------HHHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHH-----H
Q 045023 338 IS-D-QEFKGDLTAKICSMVEKFSPD--KI------WYIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDLHG-----Y 401 (812)
Q Consensus 338 ~~-d-~~~~~~li~~I~~la~k~~~~--~~------w~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~-----~ 401 (812)
.. + .+.+..++..|+.++...+.. .. ..+..|+++|..... .+..+++..+..+.. .++.+. .
T Consensus 452 ~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g 530 (780)
T 2z6g_A 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQG 530 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCC
Confidence 53 3 489999999999997644332 12 236678888877654 677777767777654 232222 3
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhhh--cccccccCccc-----------c-ccCCCCccChhhHHHHHHHHHhccCC
Q 045023 402 TVRALYRAVQTSIEQESLVRVAIWCIGE--YGDMLVNNVGV-----------L-NIEDPITVTESDAVDVVEIAIKHHSS 467 (812)
Q Consensus 402 ~v~~L~~~l~~~~~~~~l~~~~~WiiGE--Y~~~l~~~~~~-----------~-~~~~~~~v~~~~vi~~l~~~l~~~~~ 467 (812)
++..|+..+... ....++.++|.+|. |.+-... ..+ . .......+-+..++..|..++.+ .
T Consensus 531 ~i~~Lv~lL~~~--~~~~~~~aa~al~nq~~~~~~~~-~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~--~ 605 (780)
T 2z6g_A 531 AIPRLVQLLVRA--HQDTQRRTSMGGTQQQFVEGVRM-EEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS--P 605 (780)
T ss_dssp HHHHHHHHHHHH--HHHHHHTTC------CCSTTCCH-HHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC--S
T ss_pred CHHHHHHHHHhc--chhHHHHHhhccccchhhcccCh-HHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC--C
Confidence 456677766632 22335556666554 2110000 000 0 00000001112334445555543 4
Q ss_pred CHHHHHHHHHHHHHHHccCCCChHHHH-----HHHHHhhCCCChHHHHHHHHHHHHhcc
Q 045023 468 DITTKAMAMVALLKLSSRFPSCSERIR-----DIIVQNKGSLVLELQQRSIEFNSIVEK 521 (812)
Q Consensus 468 ~~~vk~~iLtAl~KL~~r~p~~~~~i~-----~ll~~~~~s~~~evqqRA~ey~~Ll~~ 521 (812)
++.++..+..++..|+. .++....+. ..|.....+.|.+||.+|..-..-+..
T Consensus 606 ~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 606 IENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 68899999999999873 233222222 345556678999999999987776653
No 31
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.67 E-value=8.6e-06 Score=103.58 Aligned_cols=467 Identities=12% Similarity=0.112 Sum_probs=264.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-------CChhHHHHHhhccCCCCchhHHHHHHHHhcccch-hHHH
Q 045023 33 ECAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-------HFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQ-EVLM 104 (812)
Q Consensus 33 E~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~-el~~ 104 (812)
.+..+-..+.++|...|+.++..|.-.. ..... ......+++.+.+++...|+.+..++..+...-+ +..-
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l-~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTEL-QKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHT-SSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHH-cccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4556666777778888887776665422 11111 1234456667778888899999988888765433 2344
Q ss_pred HHHHHHHhhcCCCCHhHHHHHHHHHhccC---chh---------hHHHHHHHHHHhcc-CCCcceeccCCCchhHHHHHH
Q 045023 105 LVTNSLKQDLNHTNQYIVGLALCALGNIC---SAE---------MARDLAPEVERLLQ-FRDPNIRKKPKCLDGLVKTLR 171 (812)
Q Consensus 105 L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~---~~e---------~~~~l~~~V~~ll~-~~~pyVRKkA~~v~~lv~~L~ 171 (812)
-+...+.+-|.++++.+|..|..+|+.|. .++ ..+.++|.+.+++. +.++.+|..| +..|.
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~a------l~~l~ 159 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA------LDIMA 159 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHH------HHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHH------HHHHH
Confidence 45677778888999999988888888764 222 57889999999998 4777777666 33333
Q ss_pred HHhc---CCCCCcc--------ccccCCChhHHHHHHHHHHhcCCCCch--hhhHHHHHHHHHhhccccCCCCcchHHHH
Q 045023 172 DVVN---SPYAPEY--------DIAGITDPFLHIRLLKLLHVLGQGDAD--ASDCMNDILAQVATKTESNKNAGNAILYE 238 (812)
Q Consensus 172 ~L~~---~~~~pe~--------~~~~~~dpwlqv~lL~lL~~l~~~~~~--~~~~l~diL~~v~~~~~~~kn~~~aVl~e 238 (812)
+++. ..+.|.+ ......+++.+...++.|..+...-++ ....+..++..+....+ . ....-.++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~--~-~~r~~a~~ 236 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS--M-STTRTYIQ 236 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS--S-CSCTTHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc--h-hHHHHHHH
Confidence 3321 1122211 123446788888889988888754322 11223334433333211 0 11122355
Q ss_pred HHHHHHhcCC---ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhh----hcccccc--------
Q 045023 239 CVETIMSIED---NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRAT----ILECVKD-------- 303 (812)
Q Consensus 239 ~v~~i~~i~~---~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~----i~~cL~d-------- 303 (812)
++..+..... .+.+ ...+..+...+.+.++.+|-.++..+..++...+..+.+|... ++.++..
T Consensus 237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~ 315 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 315 (1230)
T ss_dssp HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcc
Confidence 5555554321 1222 2245666677778889999999999999887665444444333 3333321
Q ss_pred ---------------------------cC--HhHHHHHHHHHHHhcCCC--CHHHH----HHHHHHHhhhcCHHHHHHHH
Q 045023 304 ---------------------------LD--ASIRKRALELVYLLVNES--NVKPL----TKELIDYLEISDQEFKGDLT 348 (812)
Q Consensus 304 ---------------------------~D--~sIr~~aLell~~l~n~~--Nv~~I----v~eLl~yl~~~d~~~~~~li 348 (812)
+| ..+|+.|++.+..++... -+..+ ++.|..++.+.+.++|..++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 01 246888999998887632 23444 44455555566788999999
Q ss_pred HHHHHHHhhhCCc---------------h----hH----HHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc----HHH
Q 045023 349 AKICSMVEKFSPD---------------K----IW----YIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL----HGY 401 (812)
Q Consensus 349 ~~I~~la~k~~~~---------------~----~w----~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l----~~~ 401 (812)
..+..++..+... . .- .+..+.+.+......+...++..+..++...++. ...
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ 475 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH
T ss_pred HHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH
Confidence 9998888765431 1 11 2333444455555566677777777777765542 233
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 045023 402 TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLK 481 (812)
Q Consensus 402 ~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~K 481 (812)
++..+...+.+... ...+..|.++.++.++...+. + .. ..--..++..+...+.. ....++..++.++..
T Consensus 476 ll~~l~~~L~d~~~---~~~v~~~a~~~l~~~~~~~~~---~-~~-~~~l~~llp~L~~~l~d--~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSS---SSNLKIDALSCLYVILCNHSP---Q-VF-HPHVQALVPPVVACVGD--PFYKITSEALLVTQQ 545 (1230)
T ss_dssp HHHHHHHHTTCSSS---CHHHHHHHHHHHHHHHHSSCG---G-GG-HHHHTTTHHHHHHHHTC--SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC---cchHHHHHHHHHHHHHHhCCH---H-HH-HhHHHHHHHHHHHHHcc--cchHHHHHHHHHHHH
Confidence 44555555553221 123445666666554321110 0 00 00001233333333332 245676667666666
Q ss_pred HHccCC--------CC---hHHHHHH-HHHhh-CCCChHHHHHHHHHHHHhc
Q 045023 482 LSSRFP--------SC---SERIRDI-IVQNK-GSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 482 L~~r~p--------~~---~~~i~~l-l~~~~-~s~~~evqqRA~ey~~Ll~ 520 (812)
+...+. .. .+.+... +.... .+.+.++|+.|.+....+-
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 653321 12 2344433 34343 6889999999987766553
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.63 E-value=2e-06 Score=98.42 Aligned_cols=399 Identities=13% Similarity=0.105 Sum_probs=223.3
Q ss_pred HHHHHHhhcCCCCHhHHHHHHHHHhccCchhhH-------HHHHHHHHHhccC-CCcceeccC-C------Cc-------
Q 045023 106 VTNSLKQDLNHTNQYIVGLALCALGNICSAEMA-------RDLAPEVERLLQF-RDPNIRKKP-K------CL------- 163 (812)
Q Consensus 106 ~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~-------~~l~~~V~~ll~~-~~pyVRKkA-~------~v------- 163 (812)
++..+.+=|.+.++.+|..|+.+|++++..+-. +..++.+.++|.+ .++.+|+.| . ..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 344555555677777777777777776542211 1345566666653 366676665 0 00
Q ss_pred --hhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHH--HHHHHHhhccccCCCCcchHHHHH
Q 045023 164 --DGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMN--DILAQVATKTESNKNAGNAILYEC 239 (812)
Q Consensus 164 --~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~--diL~~v~~~~~~~kn~~~aVl~e~ 239 (812)
...+..|-+++ ...+|-.|...+..|..++..++...+.+. ..+..+..-.. +.+..+...+
T Consensus 98 ~~~g~i~~L~~lL-----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~ 163 (529)
T 1jdh_A 98 FKSGGIPALVKML-----------GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAIT 163 (529)
T ss_dssp HHTTHHHHHHHHT-----------TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHH
T ss_pred HHcCCHHHHHHHH-----------cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHH
Confidence 01122222222 224566777777888777654333222221 22222222211 1233444445
Q ss_pred HHHHHhcCC-ChhHHH-----HHHHHHHHhhcCCC-cchHHHHHHHHHHHHhhC---HHHHH-HhHhhhcccccccCHhH
Q 045023 240 VETIMSIED-NGGLRV-----LAINILGRFLSNRD-NNIRYVALNMLMKAITVD---AQAVQ-RHRATILECVKDLDASI 308 (812)
Q Consensus 240 v~~i~~i~~-~~~L~~-----l~i~~L~~fL~~~d-~niryvaL~~L~~l~~~~---p~~v~-~h~~~i~~cL~d~D~sI 308 (812)
+.++..+.. +++.+. -++..|..+|.+.+ ...++.+...|..+.... ..+++ .-...++.++.+.+..+
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHH
Confidence 445444432 222111 24566667776544 345666677666665422 11221 22355677889999999
Q ss_pred HHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh-----HHHHHHHHHHhhcC--
Q 045023 309 RKRALELVYLLVNES----NVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI-----WYIDQMLKVLSEAG-- 377 (812)
Q Consensus 309 r~~aLell~~l~n~~----Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~-----w~vd~ll~lL~~~g-- 377 (812)
++.++..+..++... .+..+++.|...+...|++.+..++..++.++........ -.+..++++|...+
T Consensus 244 ~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 323 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCH
Confidence 999999999998643 4567899999999989999999999999999764221111 24677888887654
Q ss_pred ccchHHHHHHHHHHHHhCCCc---HH-----HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCcc
Q 045023 378 NFVKDEVWHALIVVISNASDL---HG-----YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITV 449 (812)
Q Consensus 378 ~~v~~e~i~~i~~li~~~p~l---~~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v 449 (812)
..+...++..+..+....|+. +. .++..|...+... ....++..++|++|..+.--.+. ..+
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~v~~~a~~~l~nl~~~~~~~---------~~~ 393 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANH---------APL 393 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTSGGGH---------HHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc-cchHHHHHHHHHHHHHhcChhhh---------HHH
Confidence 356666676666665555542 22 2344555555532 33467888999999987421110 011
Q ss_pred ChhhHHHHHHHHHhccC--------------------CCHHHHHHHHHHHHHHHccCCCChHHHH-----HHHHHhhCCC
Q 045023 450 TESDAVDVVEIAIKHHS--------------------SDITTKAMAMVALLKLSSRFPSCSERIR-----DIIVQNKGSL 504 (812)
Q Consensus 450 ~~~~vi~~l~~~l~~~~--------------------~~~~vk~~iLtAl~KL~~r~p~~~~~i~-----~ll~~~~~s~ 504 (812)
-+..++..+..++.... ....++...+.++..|+. .++.+..+. ..|.....+.
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~ 472 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP 472 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCC
Confidence 12344554444443210 123445566777777764 233222222 3555566788
Q ss_pred ChHHHHHHHHHHHHhccCHHHHHHh
Q 045023 505 VLELQQRSIEFNSIVEKHQNIRSTL 529 (812)
Q Consensus 505 ~~evqqRA~ey~~Ll~~~~~~~~~l 529 (812)
+.++|..|.....-+..++..+..+
T Consensus 473 ~~~v~~~a~~~l~~l~~~~~~~~~i 497 (529)
T 1jdh_A 473 IENIQRVAAGVLCELAQDKEAAEAI 497 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999987655454444454443
No 33
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.63 E-value=2.1e-05 Score=95.71 Aligned_cols=424 Identities=13% Similarity=0.094 Sum_probs=234.1
Q ss_pred CCCCchhHHHHHHHHhcccch-hHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCch---h----hHHHHHHHHHHhccC
Q 045023 80 AGFPEKRIGYLGLMLLLDERQ-EVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSA---E----MARDLAPEVERLLQF 151 (812)
Q Consensus 80 ~~~~~KRlgYL~~~~ll~~~~-el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~---e----~~~~l~~~V~~ll~~ 151 (812)
+++..|+.+.-++..+....+ +++-.+.+.+..-++++++.+|-.|+.+++.+... + ..+.+++.+.+.+.|
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467777776666665543322 34445667777888899999999999999998642 2 345678888899999
Q ss_pred CCcceeccC-CCch--------------hHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCC----------
Q 045023 152 RDPNIRKKP-KCLD--------------GLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQG---------- 206 (812)
Q Consensus 152 ~~pyVRKkA-~~v~--------------~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~---------- 206 (812)
+++.||..| .++. .+-.++..++.. ... +|-.+...++.|..++..
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~--------l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG--------LSA-EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH--------TTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHH--------HcC-CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999888 1111 111222222110 011 133344444444443211
Q ss_pred -----CchhhhHHHHHHHHHhhccccCCC---CcchHHHHHHHHHHhcCCCh--hHHHHHHHHHHHhhc-----------
Q 045023 207 -----DADASDCMNDILAQVATKTESNKN---AGNAILYECVETIMSIEDNG--GLRVLAINILGRFLS----------- 265 (812)
Q Consensus 207 -----~~~~~~~l~diL~~v~~~~~~~kn---~~~aVl~e~v~~i~~i~~~~--~L~~l~i~~L~~fL~----------- 265 (812)
.......+..++..+......... .-...++||+..+....... ......+..+...+.
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 011223344444444332211110 11234677777776543321 111122222222221
Q ss_pred CCC----cchHHHHHHHHHHHHhhCH-HHHHHhHhh----hcccccccC--HhHHHHHHHHHHHhcCC------CCHHHH
Q 045023 266 NRD----NNIRYVALNMLMKAITVDA-QAVQRHRAT----ILECVKDLD--ASIRKRALELVYLLVNE------SNVKPL 328 (812)
Q Consensus 266 ~~d----~niryvaL~~L~~l~~~~p-~~v~~h~~~----i~~cL~d~D--~sIr~~aLell~~l~n~------~Nv~~I 328 (812)
+.| +++|-.++..|..++..-. ..+.+|... ++.++++.. ..+|..++.++..++.. .-+..+
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222 4567788888888887655 556665544 345566553 47899999998887752 235677
Q ss_pred HHHHHHHhhhc-CHHHHHHHHHHHHHHHhhhCCch----hHHHHHHHHHHhhc--CccchHHHHHHHHHHHHhCC-CcHH
Q 045023 329 TKELIDYLEIS-DQEFKGDLTAKICSMVEKFSPDK----IWYIDQMLKVLSEA--GNFVKDEVWHALIVVISNAS-DLHG 400 (812)
Q Consensus 329 v~eLl~yl~~~-d~~~~~~li~~I~~la~k~~~~~----~w~vd~ll~lL~~~--g~~v~~e~i~~i~~li~~~p-~l~~ 400 (812)
++.|...+... +.++|..++..++.++....+.. ...+..+++.+... ...+...++..+-+++...+ ++..
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 77778888776 78899999999998887654433 34555566666542 23466777777777665322 3322
Q ss_pred ---HHHHHHHHHHhhcc---ch------HHHHHHHHHhhhhc----cccccc----CccccccCCCCccChhhHHHHHHH
Q 045023 401 ---YTVRALYRAVQTSI---EQ------ESLVRVAIWCIGEY----GDMLVN----NVGVLNIEDPITVTESDAVDVVEI 460 (812)
Q Consensus 401 ---~~v~~L~~~l~~~~---~~------~~l~~~~~WiiGEY----~~~l~~----~~~~~~~~~~~~v~~~~vi~~l~~ 460 (812)
.++..+...+.... +. ..++..+.-.+++. +..... ...+. +. -+.++..+..
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~---~~~i~~~l~~ 803 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQ----PR---VEFILSFIDH 803 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSG----GG---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHH----HH---HHHHHHHHHH
Confidence 23344444443211 00 12333333222221 211000 00000 00 1234454544
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHccCCC-C------hHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 461 AIKHHSSDITTKAMAMVALLKLSSRFPS-C------SERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 461 ~l~~~~~~~~vk~~iLtAl~KL~~r~p~-~------~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
+......+..+|...+.++.++...++. . ...+..++..+..|.+.++|+-|..-...+
T Consensus 804 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 804 IAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 4332211679999999999999988865 2 234556776577889999999998876655
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.63 E-value=5.9e-06 Score=97.86 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=190.5
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhHH-----HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC-ChhHH-----HHHH
Q 045023 189 DPFLHIRLLKLLHVLGQGDADASDCM-----NDILAQVATKTESNKNAGNAILYECVETIMSIED-NGGLR-----VLAI 257 (812)
Q Consensus 189 dpwlqv~lL~lL~~l~~~~~~~~~~l-----~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~-~~~L~-----~l~i 257 (812)
++-.|...+..|..++..++.....+ ...|-.++.. .+.-+...++.++..+.. +++.+ .-++
T Consensus 111 ~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v 184 (644)
T 2z6h_A 111 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK------TNVKFLAITTDCLQILAYGNQESKLIILASGGP 184 (644)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc------CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCCh
Confidence 56667777777766654332222211 1222222221 122344444555555442 22211 1246
Q ss_pred HHHHHhhcCCC-cchHHHHHHHHHHHHhhCH--HHHHH--hHhhhcccccccCHhHHHHHHHHHHHhcCC----CCHHHH
Q 045023 258 NILGRFLSNRD-NNIRYVALNMLMKAITVDA--QAVQR--HRATILECVKDLDASIRKRALELVYLLVNE----SNVKPL 328 (812)
Q Consensus 258 ~~L~~fL~~~d-~niryvaL~~L~~l~~~~p--~~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~n~----~Nv~~I 328 (812)
..|.++|.+.+ ..+++.++..|..+..... ..+.. -...++.++.+.+..+++.++..|..++.. ..+..+
T Consensus 185 ~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~ 264 (644)
T 2z6h_A 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 264 (644)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 67777776644 4567778888777764221 22222 235567788899999999999999999864 345688
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcC--ccchHHHHHHHHHHHHhCCC---c
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAG--NFVKDEVWHALIVVISNASD---L 398 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g--~~v~~e~i~~i~~li~~~p~---l 398 (812)
++.|+..+...|.+.+..++..++.++......... .+..++++|...+ ..+...++..+..+....++ .
T Consensus 265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~ 344 (644)
T 2z6h_A 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 344 (644)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999899999999999999998643222221 5778888888755 35666667666666554453 1
Q ss_pred HH-----HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc--------
Q 045023 399 HG-----YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH-------- 465 (812)
Q Consensus 399 ~~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~-------- 465 (812)
+. .++..|...|... ....++..++|++|..+.--.+. ..+-+..++..|..++...
T Consensus 345 q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~~~~~~---------~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 345 QNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANH---------APLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp HHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTSGGGH---------HHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHccCHHHH---------HHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 22 3455566666532 33467889999999876421110 1112234555444444431
Q ss_pred ------------CCCHHHHHHHHHHHHHHHccCCCChHHH-----HHHHHHhhCCCChHHHHHHHHHHHHhccCHHHHHH
Q 045023 466 ------------SSDITTKAMAMVALLKLSSRFPSCSERI-----RDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIRST 528 (812)
Q Consensus 466 ------------~~~~~vk~~iLtAl~KL~~r~p~~~~~i-----~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~~~ 528 (812)
..+..++..++.|+..|+. .+..+..+ ...|-....+.+.++|..|.....-+...++.+..
T Consensus 415 ~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 493 (644)
T 2z6h_A 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 493 (644)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHH
Confidence 0235677788888887763 22222222 23444445678899999998754444444555444
Q ss_pred h
Q 045023 529 L 529 (812)
Q Consensus 529 l 529 (812)
+
T Consensus 494 i 494 (644)
T 2z6h_A 494 I 494 (644)
T ss_dssp H
T ss_pred H
Confidence 3
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.62 E-value=8e-06 Score=98.18 Aligned_cols=388 Identities=14% Similarity=0.083 Sum_probs=251.1
Q ss_pred hHHHHHHHHHHH-HHHHHHHccCChHHHHHHHHHHHHHHHcCCC-C------CChh-HHHHHhhccCCCCchhHHHHHHH
Q 045023 23 AAEERAVVRKEC-AAIRAAINENDQDYRHRNLAKLMFIHMLGYP-T------HFGQ-MECLKSIASAGFPEKRIGYLGLM 93 (812)
Q Consensus 23 ~~eEr~~i~~E~-a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~-~------~~~~-~evikli~s~~~~~KRlgYL~~~ 93 (812)
...||+.-++-| .-|+.+|.+.+..++.++.+-+ .....|-. + ..|+ ...+.+++|++...++-++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~al-t~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~ 315 (810)
T 3now_A 237 YDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAI-TALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-HHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHH-HHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555444 3466778788888888885544 44555642 1 2344 45567889999899999998888
Q ss_pred HhcccchhHHH----HHHHHHHhhcCCCCHhHHHHHHHHHhccCc--------hhh----HHHHHHHHHHhccCC--Ccc
Q 045023 94 LLLDERQEVLM----LVTNSLKQDLNHTNQYIVGLALCALGNICS--------AEM----ARDLAPEVERLLQFR--DPN 155 (812)
Q Consensus 94 ~ll~~~~el~~----L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--------~e~----~~~l~~~V~~ll~~~--~py 155 (812)
..... ++..- .-+..|.+=+.+.++.++..|+.+|+++++ +.+ ++.+.+...++|.++ ++-
T Consensus 316 ~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~ 394 (810)
T 3now_A 316 AASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394 (810)
T ss_dssp HHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSS
T ss_pred HHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHH
Confidence 86544 44322 223556666678889999999999999853 222 467788888999887 888
Q ss_pred eeccC---------------CCc--hhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCc-h--------
Q 045023 156 IRKKP---------------KCL--DGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDA-D-------- 209 (812)
Q Consensus 156 VRKkA---------------~~v--~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~-~-------- 209 (812)
+|+.| .++ ..++..|=+++.+ .++=.|-..+++|..+....+ .
T Consensus 395 v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s-----------~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~ 463 (810)
T 3now_A 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG-----------GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT-----------TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC-----------CChHHHHHHHHHHHHHcCCchhhhhhHHHHH
Confidence 99988 011 1223333333322 234456666777766665321 0
Q ss_pred ----------------hhhHH------------HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHH-----H
Q 045023 210 ----------------ASDCM------------NDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVL-----A 256 (812)
Q Consensus 210 ----------------~~~~l------------~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l-----~ 256 (812)
..+.. ...|-+++. +....|.-+|+.++..+..+++.+.. +
T Consensus 464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 00011 112223332 24568899999999999777665443 4
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhh-CHHHH------HHhHhhhccccccc-CHhHHHHHHHHHHHhcCC--CCHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITV-DAQAV------QRHRATILECVKDL-DASIRKRALELVYLLVNE--SNVK 326 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v------~~h~~~i~~cL~d~-D~sIr~~aLell~~l~n~--~Nv~ 326 (812)
+..|..+|.+.+...|-.|..+|..++.. +|..+ ..-...++.+|..+ +...+..|+.-|..|+.. ++..
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 67888899999999999999999998754 55442 12234556777744 445556799999999874 4555
Q ss_pred HHH-----HHHHHHhhhcCHHHHHHHHHHHHHHHhh------hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC
Q 045023 327 PLT-----KELIDYLEISDQEFKGDLTAKICSMVEK------FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA 395 (812)
Q Consensus 327 ~Iv-----~eLl~yl~~~d~~~~~~li~~I~~la~k------~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~ 395 (812)
.|+ +.|..++...+..+++.++..|+.++.. |..+ .-.+..|+.++......+..++...+..+...+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 555 4577888888889999999999998842 2211 125667778777766667777766666666655
Q ss_pred CCcHHH------HHHHHHHHHhhccchHHHHHHHHHhhhhccc
Q 045023 396 SDLHGY------TVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 396 p~l~~~------~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~ 432 (812)
++...+ .+..|+..+.. ....++..++|+++....
T Consensus 697 ~~~~~~ii~~~g~I~~Lv~LL~s--~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 697 VKCCEKILAIASWLDILHTLIAN--PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHh
Confidence 544333 34466666653 455678999999987654
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.49 E-value=7e-06 Score=91.87 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=135.3
Q ss_pred cchHHHHHHHHHHhcCC-------ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHh-h----hcc
Q 045023 232 GNAILYECVETIMSIED-------NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRA-T----ILE 299 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~-------~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~-~----i~~ 299 (812)
+..|..++++++..+-. ........+..+...+.+.+..+|-.+++.|..++...+..+..|.. . ++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888765311 11123334667777778889999999999999999888776655554 3 345
Q ss_pred cccccCHhHHHHHHHHHHHhcCCC---------------------------CHHHHHHHHHHHhhhc-------CHHHHH
Q 045023 300 CVKDLDASIRKRALELVYLLVNES---------------------------NVKPLTKELIDYLEIS-------DQEFKG 345 (812)
Q Consensus 300 cL~d~D~sIr~~aLell~~l~n~~---------------------------Nv~~Iv~eLl~yl~~~-------d~~~~~ 345 (812)
+++|.+..+|..+++.+..++... .+..+++.|+..+... +...|.
T Consensus 267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 677999999999999998887542 1256777777777543 235788
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHhh----cCccchHHHHHHHHHHHHhCC-C-c---HHHHHHHHHHHHhhccch
Q 045023 346 DLTAKICSMVEKFSPDKIWYIDQMLKVLSE----AGNFVKDEVWHALIVVISNAS-D-L---HGYTVRALYRAVQTSIEQ 416 (812)
Q Consensus 346 ~li~~I~~la~k~~~~~~w~vd~ll~lL~~----~g~~v~~e~i~~i~~li~~~p-~-l---~~~~v~~L~~~l~~~~~~ 416 (812)
.+...+..++..+. ++++..++..+.. ..-.+...++..+-.+..... + + ...++..+...+.+ ..
T Consensus 347 ~a~~~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d--~~ 421 (462)
T 1ibr_B 347 AAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PS 421 (462)
T ss_dssp HHHHHHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC--SC
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC--CC
Confidence 89999999998877 3666666665543 333456666666655554322 2 1 13455566666653 34
Q ss_pred HHHHHHHHHhhhhcccccc
Q 045023 417 ESLVRVAIWCIGEYGDMLV 435 (812)
Q Consensus 417 ~~l~~~~~WiiGEY~~~l~ 435 (812)
..++..++|++|.|++.+.
T Consensus 422 ~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 422 VVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5689999999999998764
No 37
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.48 E-value=3.2e-06 Score=99.74 Aligned_cols=350 Identities=13% Similarity=0.122 Sum_probs=216.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCC-CCChhHHHHHhh--ccCCCCchhHHHHHHHHhcccchhHHH--HHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYP-THFGQMECLKSI--ASAGFPEKRIGYLGLMLLLDERQEVLM--LVTN 108 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~-~~~~~~evikli--~s~~~~~KRlgYL~~~~ll~~~~el~~--L~~N 108 (812)
+..|++.+.++++..|.-++.-|-.+. ..+ +.....++.+++ .+.+...||-+.+++..++..+||+.. -..+
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~ 190 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG--SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTS 190 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHH
Confidence 567889999999888877766665541 111 134566777888 778888999999998888888888876 5678
Q ss_pred HHHhhcCCCCHhHHHHHHHHHhccCc--hh----hHHHHHHHHHHhccCC-------------CcceeccC-----CCc-
Q 045023 109 SLKQDLNHTNQYIVGLALCALGNICS--AE----MARDLAPEVERLLQFR-------------DPNIRKKP-----KCL- 163 (812)
Q Consensus 109 sl~kDL~s~n~~i~~lAL~~Ls~I~~--~e----~~~~l~~~V~~ll~~~-------------~pyVRKkA-----~~v- 163 (812)
.+.+=|.++|+.+++.|+..++.|+. ++ .++.++..+.+++.++ +|+.+=+. .+.
T Consensus 191 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 191 RVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 88999999999999999999999865 33 3444444455555432 22222111 000
Q ss_pred ---h----hHHHHHHHHhcCC-CCCc--cccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcc
Q 045023 164 ---D----GLVKTLRDVVNSP-YAPE--YDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGN 233 (812)
Q Consensus 164 ---~----~lv~~L~~L~~~~-~~pe--~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~ 233 (812)
+ .+.+.|..++... -.|. ..-+....+=......+++..+. .+++........|..++. +..+
T Consensus 271 ~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~------~~~~ 343 (621)
T 2vgl_A 271 PEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQ------HRET 343 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSS------CSCH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhc------CCCc
Confidence 0 1111111111100 0000 00000000011222333333333 122222333334444432 2345
Q ss_pred hHHHHHHHHHHhcCCC---hhHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHH
Q 045023 234 AILYECVETIMSIEDN---GGLRVLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIR 309 (812)
Q Consensus 234 aVl~e~v~~i~~i~~~---~~L~~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr 309 (812)
-+-|-+.+++..+... ..........+...|. +.|..||..+|+.|..++.. +-+..-...+...+.+.|..+|
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~ 421 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIR 421 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHH
Confidence 6777777777766432 2333334445555567 89999999999999999754 3344444556666778899999
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHH
Q 045023 310 KRALELVYLLVN--ESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHA 387 (812)
Q Consensus 310 ~~aLell~~l~n--~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~ 387 (812)
+.++.-+..++. ..+....++-|++.+......++.+++..+..++.+.+...+..+..+++.+.... ....++..
T Consensus 422 ~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~--~~~~li~~ 499 (621)
T 2vgl_A 422 EEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPA--CHENLVKV 499 (621)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSS--CCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCcc--chHHHHHH
Confidence 998888777764 36788899999999988777788999999999998888777777777877776432 33445545
Q ss_pred HHHHHHhCC
Q 045023 388 LIVVISNAS 396 (812)
Q Consensus 388 i~~li~~~p 396 (812)
...++.++.
T Consensus 500 ~~wilGEy~ 508 (621)
T 2vgl_A 500 GGYILGEFG 508 (621)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhcchH
Confidence 556666553
No 38
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.46 E-value=9.5e-05 Score=93.98 Aligned_cols=250 Identities=13% Similarity=0.126 Sum_probs=158.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhC-------------------HHHHHHhHhhhccc----ccccCHhHHHHHH
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVD-------------------AQAVQRHRATILEC----VKDLDASIRKRAL 313 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~-------------------p~~v~~h~~~i~~c----L~d~D~sIr~~aL 313 (812)
+..+...+.+.+.++|..++++|..++... ...++.+...++.. ++|++..+|..++
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 344555566778999999999998887531 24556666666555 8999999999999
Q ss_pred HHHHHhcCC------CCHHHHHHHHHHHhhhcC--HHHHHHHHHHHHHHHhhhCCc-hhHH----HHHHHHHHhhcCccc
Q 045023 314 ELVYLLVNE------SNVKPLTKELIDYLEISD--QEFKGDLTAKICSMVEKFSPD-KIWY----IDQMLKVLSEAGNFV 380 (812)
Q Consensus 314 ell~~l~n~------~Nv~~Iv~eLl~yl~~~d--~~~~~~li~~I~~la~k~~~~-~~w~----vd~ll~lL~~~g~~v 380 (812)
.++..++.. ..+..+++.++..+.... .+.+.+++..++.+++.+.+. ..-| +..++..+......+
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v 535 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 535 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHH
Confidence 998877653 457788888888887654 488999999999988765543 3334 444444444433345
Q ss_pred hHHHHHHHHHHHHh-CC-------CcHHH---HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCcc
Q 045023 381 KDEVWHALIVVISN-AS-------DLHGY---TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITV 449 (812)
Q Consensus 381 ~~e~i~~i~~li~~-~p-------~l~~~---~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v 449 (812)
..+++..+..++.. .+ .+..| ++..++..+........++..+++++|......... +.+
T Consensus 536 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~--~~~------- 606 (1230)
T 1u6g_C 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN--LGS------- 606 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG--CCT-------
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch--hhh-------
Confidence 56666666666643 12 34433 444555555322233457888999999876543211 000
Q ss_pred ChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC-C-C---ChHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 450 TESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF-P-S---CSERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 450 ~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~-p-~---~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
.-..++..+...+. ...+|...+.++.+++... + + ....+...+.....+.+..+|+-|.+...-+
T Consensus 607 ~~~~~l~~L~~~l~----~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 607 DLPNTLQIFLERLK----NEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp HHHHHHHHHHHHTT----SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 00234444433333 3457777777777776422 1 1 2345666667777888999999988876655
No 39
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.45 E-value=0.00014 Score=87.53 Aligned_cols=286 Identities=13% Similarity=0.095 Sum_probs=186.2
Q ss_pred chHHHHHHHHHHhcCCChhHHH------HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH-------------------
Q 045023 233 NAILYECVETIMSIEDNGGLRV------LAINILGRFLSNRDNNIRYVALNMLMKAITVDA------------------- 287 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~------l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p------------------- 287 (812)
.-+.-.|+..+.++..++..+. -++..|..+|.+.++.++|-++.+|..++..+.
T Consensus 393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v 472 (810)
T 3now_A 393 KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472 (810)
T ss_dssp SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence 4577788888888776655332 356677888889999999999999999987320
Q ss_pred ---------HHHH-------H--hHhhhcccccccCHhHHHHHHHHHHHhcCCC-CHHHH-----HHHHHHHhhhcCHHH
Q 045023 288 ---------QAVQ-------R--HRATILECVKDLDASIRKRALELVYLLVNES-NVKPL-----TKELIDYLEISDQEF 343 (812)
Q Consensus 288 ---------~~v~-------~--h~~~i~~cL~d~D~sIr~~aLell~~l~n~~-Nv~~I-----v~eLl~yl~~~d~~~ 343 (812)
+.++ . -...++.+|+.+++.+|..|...|..|+... |...| ++-|+..+...+...
T Consensus 473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~ 552 (810)
T 3now_A 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHH
Confidence 1111 1 2345778899999999999999999998553 44433 355778888888899
Q ss_pred HHHHHHHHHHHHhhhCCch-------hHHHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH
Q 045023 344 KGDLTAKICSMVEKFSPDK-------IWYIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDLHG-----YTVRALYRAV 410 (812)
Q Consensus 344 ~~~li~~I~~la~k~~~~~-------~w~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~-----~~v~~L~~~l 410 (812)
++.++.+|+.++.--.|.. .-.+..|+++|..... ....++...+..+....++.+. .++.+|...+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL 632 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999885432222 1246777887764433 2234566667766655444443 3455677766
Q ss_pred hhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCCh
Q 045023 411 QTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCS 490 (812)
Q Consensus 411 ~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~ 490 (812)
.. .+..+.+.++|++|.....-..-..+ +...+.+..|-.++.. .+..+|.....|++=++...++..
T Consensus 633 ~s--~~~~Vq~~A~~~L~NLa~~~~~~~~~--------v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~ 700 (810)
T 3now_A 633 ME--DHLYLTRAAAQCLCNLVMSEDVIKMF--------EGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCC 700 (810)
T ss_dssp HS--CCTTHHHHHHHHHHHHTTSHHHHHHH--------HSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cC--CCHHHHHHHHHHHHHHhCChHHHHHH--------HhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHH
Confidence 63 34567899999999865321100000 1012456666666653 467899999999998887544321
Q ss_pred H------HHHHHHHHhhCCCChHHHHHHHHHHH-HhccCHHHHHHhh
Q 045023 491 E------RIRDIIVQNKGSLVLELQQRSIEFNS-IVEKHQNIRSTLV 530 (812)
Q Consensus 491 ~------~i~~ll~~~~~s~~~evqqRA~ey~~-Ll~~~~~~~~~ll 530 (812)
. .....|.....+.|.++|.||..... |....++.++.+.
T Consensus 701 ~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~ 747 (810)
T 3now_A 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLF 747 (810)
T ss_dssp HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 12234445566899999999998664 4433444554443
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.36 E-value=4.5e-05 Score=87.69 Aligned_cols=311 Identities=12% Similarity=0.111 Sum_probs=196.4
Q ss_pred ChhHHHHHHHHHHhcCCCCchhhhHHH-----HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHHH-----HH
Q 045023 189 DPFLHIRLLKLLHVLGQGDADASDCMN-----DILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRVL-----AI 257 (812)
Q Consensus 189 dpwlqv~lL~lL~~l~~~~~~~~~~l~-----diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~l-----~i 257 (812)
+|-+|......|+.++..+++....+. ..|-.++. +....|...|+.++..+..+ +..+.. ++
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~------s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i 187 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA------SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCh
Confidence 577888899999998877665444333 22333332 24567889999999988654 444433 35
Q ss_pred HHHHHhhcCCCcc-----hHHHHHHHHHHHHhhC-----HHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCC--H
Q 045023 258 NILGRFLSNRDNN-----IRYVALNMLMKAITVD-----AQAVQRHRATILECVKDLDASIRKRALELVYLLVNESN--V 325 (812)
Q Consensus 258 ~~L~~fL~~~d~n-----iryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N--v 325 (812)
..|..+|.+.+.+ ++..+..+|..+.... -..+..-...+..+|+++|..++..|+..|..|+...+ .
T Consensus 188 ~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH
Confidence 6778888765543 3344556666665432 23344555667788999999999999999999987554 2
Q ss_pred HH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcCccchHHHHHHHHHHHHhC
Q 045023 326 KP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAGNFVKDEVWHALIVVISNA 395 (812)
Q Consensus 326 ~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~ 395 (812)
.. +++.|..++...+...+..++..|+.++......... .+..++.+|......+..++...+..+...+
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 22 3567888999899999999999999987432222111 2234555666555567777777777776655
Q ss_pred CCcHHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHH
Q 045023 396 SDLHGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDIT 470 (812)
Q Consensus 396 p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~ 470 (812)
++.... ++..|+..+.. ....++..++|.++.....-. .... ..+-+..++..|..++.. .++.
T Consensus 348 ~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~-~~~~------~~L~~~g~i~~L~~LL~~--~d~~ 416 (510)
T 3ul1_B 348 QDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGT-VEQI------VYLVHCGIIEPLMNLLSA--KDTK 416 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCC-HHHH------HHHHHTTCHHHHHHGGGC--SCHH
T ss_pred HHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCC-HHHH------HHHHHCCCHHHHHHHhcC--CCHH
Confidence 553332 44556666663 234578889999987643110 0000 000112345556566653 4678
Q ss_pred HHHHHHHHHHHHHc---cCCCChHHH---------HHHHHHhhCCCChHHHHHHHHHHH
Q 045023 471 TKAMAMVALLKLSS---RFPSCSERI---------RDIIVQNKGSLVLELQQRSIEFNS 517 (812)
Q Consensus 471 vk~~iLtAl~KL~~---r~p~~~~~i---------~~ll~~~~~s~~~evqqRA~ey~~ 517 (812)
++..+|.++.++.. +.++ .+.+ .+.|+...++.|.||+++|.....
T Consensus 417 i~~~~L~aL~nil~~~~~~~~-~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 417 IIQVILDAISNIFQAAEKLGE-TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhccc-hHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888888877664 2332 2222 235666778999999999887653
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.35 E-value=0.00051 Score=78.88 Aligned_cols=361 Identities=15% Similarity=0.092 Sum_probs=200.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-------CChhHHHHHhhccC-CCCchhHHHHHHHHhcccchhHHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-------HFGQMECLKSIASA-GFPEKRIGYLGLMLLLDERQEVLML 105 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~~~~~evikli~s~-~~~~KRlgYL~~~~ll~~~~el~~L 105 (812)
+.+|-+.+.++|...+.+++.++=-+-....+- ..+..-.++++.+. +...+.-+-.++..++..+++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456666777777777666655443222222211 12334445566533 3344444445555554444443222
Q ss_pred -----HHHHHHhhcCCCCHhHHHHHHHHHhccCc--hhhHHH-----HHHHHHHhccCCCcceeccCCCchhHHHHHHHH
Q 045023 106 -----VTNSLKQDLNHTNQYIVGLALCALGNICS--AEMARD-----LAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDV 173 (812)
Q Consensus 106 -----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--~e~~~~-----l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L 173 (812)
++..|-+=|.++++.++-.|+.+|++|+. ++.-.. .++.+..++.+.+.-.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~----------------- 201 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST----------------- 201 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGG-----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchh-----------------
Confidence 23455666677777777777777777643 222111 1223333333221100
Q ss_pred hcCCCCCccccccCCChhHHHHHHHHHHhcCCCCch--hh---hHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC
Q 045023 174 VNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDAD--AS---DCMNDILAQVATKTESNKNAGNAILYECVETIMSIED 248 (812)
Q Consensus 174 ~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~--~~---~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~ 248 (812)
.....+......|..+++.... .. ..+...|.+++. +...-|...++.++..+..
T Consensus 202 --------------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~------~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 202 --------------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH------HNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp --------------SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHTS
T ss_pred --------------hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh------cCCHHHHHHHHHHHHHHhh
Confidence 0111222333344444332211 11 122233333332 2345677777777777754
Q ss_pred Ch-hHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHH
Q 045023 249 NG-GLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRALELVY 317 (812)
Q Consensus 249 ~~-~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~ 317 (812)
.+ +... -++..|..+|.+.+..++.-++.+|..++..++...+. -...+..+|++++..||+.|.-.|.
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 32 2111 13567888899999999999999999998776543221 2344667889999999999999999
Q ss_pred HhcC--CCCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh------HHHHHHHHHHhhcCccchHHH
Q 045023 318 LLVN--ESNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI------WYIDQMLKVLSEAGNFVKDEV 384 (812)
Q Consensus 318 ~l~n--~~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~------w~vd~ll~lL~~~g~~v~~e~ 384 (812)
.|+. +.+... +++-|+..+...+.+++.+++.+|+.++..-.+... -++..|+++|......+...+
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 9874 333333 456688888889999999999999999864332211 146678888877655555555
Q ss_pred HHHHHHHHHh---CCCcHHHH--HHH-----HHHHHhhccchHHHHHHHHHhhhhccc
Q 045023 385 WHALIVVISN---ASDLHGYT--VRA-----LYRAVQTSIEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 385 i~~i~~li~~---~p~l~~~~--v~~-----L~~~l~~~~~~~~l~~~~~WiiGEY~~ 432 (812)
+..+..++.. .++...+. +.. .++.|. ...++.+...+..+|-.|..
T Consensus 422 L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 422 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCC
Confidence 5555555542 22221111 111 122233 23456678888999988864
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.35 E-value=2.9e-05 Score=86.73 Aligned_cols=367 Identities=10% Similarity=0.040 Sum_probs=206.6
Q ss_pred HHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCC--CcceeccCCCchhHHHHHHHHhcCCCCCccccccC
Q 045023 110 LKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFR--DPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGI 187 (812)
Q Consensus 110 l~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~--~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~ 187 (812)
+...+.+++..+|--|-..|..+...+ .+.....+..++.+. ++.||+.| .-.|++++...+.+...
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~~~~~~~vR~~a------~~~Lk~~i~~~~~~~~~---- 74 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLANPGNSQVARVAA------GLQIKNSLTSKDPDIKA---- 74 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHH------HHHHHHHHCCSSHHHHH----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHcCCCChHHHHHH------HHHHHHhccccchHHHH----
Confidence 334467888889988988888765411 122333344444443 57788776 44666666543322110
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcC----CChhHHHHHHHHHHHh
Q 045023 188 TDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIE----DNGGLRVLAINILGRF 263 (812)
Q Consensus 188 ~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~----~~~~L~~l~i~~L~~f 263 (812)
..- ..+..-+++..+.+.+.|-..+... .... ..+-+++..|.... .-++ .+..|...
T Consensus 75 -------~~~---~~~~~l~~~~~~~ik~~ll~~l~~~--~~~v--~~~~~~i~~ia~~~~~~~~w~~----ll~~L~~~ 136 (462)
T 1ibr_B 75 -------QYQ---QRWLAIDANARREVKNYVLQTLGTE--TYRP--SSASQCVAGIACAEIPVNQWPE----LIPQLVAN 136 (462)
T ss_dssp -------HHH---HHHHTSCHHHHHHHHHHHHHHTTCC--CSSS--CSHHHHHHHHHHHHGGGTCCTT----HHHHHHHH
T ss_pred -------HHH---hhhhcCCHHHHHHHHHHHHHHhCCC--Cchh--hHHHHHHHHHHHHhccccccHH----HHHHHHHH
Confidence 000 0111122222233332222222111 1111 22333333333321 1123 34555566
Q ss_pred hcCC--CcchHHHHHHHHHHHHhhC-HHHHHHhH----hhhccccccc--CHhHHHHHHHHHHHhcCC--CC-----H-H
Q 045023 264 LSNR--DNNIRYVALNMLMKAITVD-AQAVQRHR----ATILECVKDL--DASIRKRALELVYLLVNE--SN-----V-K 326 (812)
Q Consensus 264 L~~~--d~niryvaL~~L~~l~~~~-p~~v~~h~----~~i~~cL~d~--D~sIr~~aLell~~l~n~--~N-----v-~ 326 (812)
+.+. +.++|..++..|..++... +..+..|. ..++.++.|+ +..+|..|++.+..++.- ++ . .
T Consensus 137 l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (462)
T 1ibr_B 137 VTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (462)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 6676 8899999999999998754 43333333 3456678887 789999999999875431 11 1 2
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCc----hh-HHHHHHHHHHhhcCccchHHHHHHHHHHHHhC------
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPD----KI-WYIDQMLKVLSEAGNFVKDEVWHALIVVISNA------ 395 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~----~~-w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~------ 395 (812)
.+++.|...+...+.++|..++..+..++++|+.. .. -.+..++..+......+...++..+..+....
T Consensus 217 ~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24555666666778999999999999999887543 22 45556666665554445544444333333221
Q ss_pred -------------C--CcH----HHHHHHHHHHHhhc-----cchHHHHHHHHHhhhhcccccccCccccccCCCCccCh
Q 045023 396 -------------S--DLH----GYTVRALYRAVQTS-----IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTE 451 (812)
Q Consensus 396 -------------p--~l~----~~~v~~L~~~l~~~-----~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~ 451 (812)
+ ..- ..++..++..+.+. ......+.++++++|..+....+ .+ -
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~----------~ 364 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI----------V 364 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH----------H
T ss_pred cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH----------H
Confidence 1 111 22344444444321 11224677888999887765421 10 0
Q ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC-C----ChHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 452 SDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP-S----CSERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 452 ~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p-~----~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
..++..+...+.+ .+..+|..++.++..++.... + ..+.+...+-.+..|.++.||.+|+.-..-+
T Consensus 365 ~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 365 PHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (462)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2344555555543 368999999999999986442 2 2355667777777889999999999865544
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.32 E-value=9.6e-06 Score=82.89 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=139.4
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHHHhcCC--CCHHH--
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRALELVYLLVNE--SNVKP-- 327 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~n~--~Nv~~-- 327 (812)
+..|..+|.+.++.+|+.|+..|..+...++..... -...++.+|+++|..+|..++..|..++.. .+...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456667777777888888888888887766532221 234566777888888888888888888764 22222
Q ss_pred ---HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh-----HHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcH
Q 045023 328 ---LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI-----WYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLH 399 (812)
Q Consensus 328 ---Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~-----w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~ 399 (812)
.++.|+..+...+.+++..++..++.++...+.... -.+..+++++......+...++..+..+....++..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 456677777777788888888888888753222111 246677777776655566666666666655444332
Q ss_pred H-----HHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHH
Q 045023 400 G-----YTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAM 474 (812)
Q Consensus 400 ~-----~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~ 474 (812)
. .++..|...+.+ ....++..++|+++..+..-.... ..+-+..++..+..++++ .++.+|..
T Consensus 164 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~--------~~l~~~~~i~~L~~ll~~--~~~~v~~~ 231 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPTSAI--------KAIVDAGGVEVLQKLLTS--TDSEVQKE 231 (252)
T ss_dssp HHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBHHHH--------HHHHHTTHHHHHHHGGGC--SCHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCHHHH--------HHHHHCCCHHHHHHHHCC--CcHHHHHH
Confidence 2 245666666663 335678889999998875211100 001123455666666653 46789999
Q ss_pred HHHHHHHHHccCC
Q 045023 475 AMVALLKLSSRFP 487 (812)
Q Consensus 475 iLtAl~KL~~r~p 487 (812)
.+.++..|....+
T Consensus 232 a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 232 AQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHTCB
T ss_pred HHHHHHHHHcCCC
Confidence 9999999987664
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.29 E-value=5e-05 Score=79.59 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=157.8
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHH-HhhcC
Q 045023 188 TDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILG-RFLSN 266 (812)
Q Consensus 188 ~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~-~fL~~ 266 (812)
.+|+.+...++.|..++ ++. ..+.|...+. +....|-..++.++-.+...+......+..|. .++.+
T Consensus 35 ~~~~vr~~A~~~L~~~~--~~~----~~~~L~~~l~------d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d 102 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRG--GQD----AVRLAIEFCS------DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND 102 (280)
T ss_dssp SSHHHHHHHHHHHHHHC--CHH----HHHHHHHHHT------CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHccC--Cch----HHHHHHHHHc------CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC
Confidence 46677777777777765 222 2222323332 23457888888888887644332223344554 34677
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGD 346 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~ 346 (812)
.++.+|..++..|..+...++.........+..+++|+|..+|..|+..|..+.++. .+..|...+.+.+..+|..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----~~~~L~~~l~d~~~~vr~~ 178 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA----TIPLLINLLKDPNGDVRNW 178 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----CHHHHHHHHTCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHcCCCHHHHHH
Confidence 889999999999999876543333333455677899999999999999999988765 4566667788889999999
Q ss_pred HHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHh
Q 045023 347 LTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWC 426 (812)
Q Consensus 347 li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~Wi 426 (812)
++..++.+. ....-.+..+++++......+..+++..+-.+- . ..++..|...+.+. .+...++|.
T Consensus 179 a~~aL~~~~----~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--~----~~~~~~L~~~l~d~----~vr~~a~~a 244 (280)
T 1oyz_A 179 AAFAININK----YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--D----KRVLSVLCDELKKN----TVYDDIIEA 244 (280)
T ss_dssp HHHHHHHHT----CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--C----GGGHHHHHHHHTSS----SCCHHHHHH
T ss_pred HHHHHHhhc----cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--C----HhhHHHHHHHhcCc----cHHHHHHHH
Confidence 999998874 234457788888887766666666665554431 2 23566777777642 156778999
Q ss_pred hhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHH
Q 045023 427 IGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVAL 479 (812)
Q Consensus 427 iGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl 479 (812)
+|++|+- +++..|..++..+. ++.+...++.++
T Consensus 245 L~~i~~~-------------------~~~~~L~~~l~~~~-~~~~~~~~~~~l 277 (280)
T 1oyz_A 245 AGELGDK-------------------TLLPVLDTMLYKFD-DNEIITSAIDKL 277 (280)
T ss_dssp HHHHCCG-------------------GGHHHHHHHHTTSS-CCHHHHHHHHHH
T ss_pred HHhcCch-------------------hhhHHHHHHHhcCC-CcHHHHHHHHHh
Confidence 9999862 23455666665433 345555555543
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.23 E-value=0.0017 Score=74.69 Aligned_cols=322 Identities=14% Similarity=0.075 Sum_probs=177.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHHHcCCCC-------CChhHHHHHhhcc-CCCCchhHHHHHHHHhcccchhHHHH
Q 045023 34 CAAIRAAINENDQDYRHRNLAKLMFIHMLGYPT-------HFGQMECLKSIAS-AGFPEKRIGYLGLMLLLDERQEVLML 105 (812)
Q Consensus 34 ~a~Ir~~l~~~~~~~r~~~l~KLiyl~~lG~~~-------~~~~~evikli~s-~~~~~KRlgYL~~~~ll~~~~el~~L 105 (812)
+.+|-+.+.++|...+..++.++--+.....+- ..+..-.++++.. ++...++-+-.++..+...+++....
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445566666666666666655554332222221 1233444555543 33344444555555554444333111
Q ss_pred -----HHHHHHhhcCCCCHhHHHHHHHHHhccCc--hhhHHHH-----HHHHHHhccCCCcceeccCCCchhHHHHHHHH
Q 045023 106 -----VTNSLKQDLNHTNQYIVGLALCALGNICS--AEMARDL-----APEVERLLQFRDPNIRKKPKCLDGLVKTLRDV 173 (812)
Q Consensus 106 -----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--~e~~~~l-----~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L 173 (812)
++..|.+=|.++++.++-.|+.+|++|+. ++.-..+ ++.+..++.+.+.-
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~------------------ 219 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS------------------ 219 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG------------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh------------------
Confidence 24455555666777777777777776642 2221111 22233333221110
Q ss_pred hcCCCCCccccccCCChhHHHHHHHHHHhcCCCCch--hh---hHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC
Q 045023 174 VNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDAD--AS---DCMNDILAQVATKTESNKNAGNAILYECVETIMSIED 248 (812)
Q Consensus 174 ~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~--~~---~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~ 248 (812)
......+-.+...|..+++.... .. ..+...|.+++. +....|...++.++..+..
T Consensus 220 -------------~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~------~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 220 -------------TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH------HNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp -------------GSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT------SSCHHHHHHHHHHHHHHHS
T ss_pred -------------HhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc------CCcHHHHHHHHHHHHHhhh
Confidence 01112222333444444332211 11 122233333332 2345577777777776643
Q ss_pred Ch-hHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHH
Q 045023 249 NG-GLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRALELVY 317 (812)
Q Consensus 249 ~~-~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~ 317 (812)
.+ +... -++..|..+|.+.+..++.-++.+|..++..++...+. -...++.+|.+++..||+.|.-.|.
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 2211 13567888899999999999999999998776543221 2344667888999999999999999
Q ss_pred HhcC--CCCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH------HHHHHHHHHhhcCccchHHH
Q 045023 318 LLVN--ESNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW------YIDQMLKVLSEAGNFVKDEV 384 (812)
Q Consensus 318 ~l~n--~~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w------~vd~ll~lL~~~g~~v~~e~ 384 (812)
.|+. +..... +++-|+..+...+.+++.+++.+|+.++..-.+.... ++..|+++|......+...+
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~ 440 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 440 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence 8874 333333 4566788888899999999999999998643322111 35667777776554444444
Q ss_pred HHHHHHHH
Q 045023 385 WHALIVVI 392 (812)
Q Consensus 385 i~~i~~li 392 (812)
+..+..++
T Consensus 441 L~aL~nil 448 (529)
T 3tpo_A 441 LDAISNIF 448 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.22 E-value=1.5e-05 Score=79.82 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=113.6
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCcccccc
Q 045023 107 TNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAG 186 (812)
Q Consensus 107 ~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~ 186 (812)
+..+.+.|.|+++.+|..|+..|+.+..++. .+.+.+++.++++.||..|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vr~~a-------------------------- 70 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAA-------------------------- 70 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSCHHHHHHH--------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccH----HHHHHHHHcCCCHHHHHHH--------------------------
Confidence 3556677889999999999999999988654 4556677888888888665
Q ss_pred CCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 045023 187 ITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSN 266 (812)
Q Consensus 187 ~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~ 266 (812)
++.|..++. ++.. +.|...+. +....|...++.++..+.... ++..|..+|.+
T Consensus 71 ----------~~aL~~~~~--~~~~----~~L~~~l~------~~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~d 123 (211)
T 3ltm_A 71 ----------ADALGQIGD--ERAV----EPLIKALK------DEDGWVRQSAAVALGQIGDER-----AVEPLIKALKD 123 (211)
T ss_dssp ----------HHHHHHHCC--GGGH----HHHHHHTT------CSSHHHHHHHHHHHHHHCCGG-----GHHHHHHHTTC
T ss_pred ----------HHHHHhhCC--HHHH----HHHHHHHc------CCCHHHHHHHHHHHHHhCcHH-----HHHHHHHHHhC
Confidence 222222221 1111 11111111 123456666666666654332 24555666777
Q ss_pred CCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHH
Q 045023 267 RDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGD 346 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~ 346 (812)
.++.+|..++..|..+.. +.+ ...+..+++|+|..+|..+++.|..+.. ...++.|...+.+.++.+|..
T Consensus 124 ~~~~vr~~a~~aL~~~~~--~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~ 193 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD--ERA----VEPLIKALKDEDGWVRQSAADALGEIGG----ERVRAAMEKLAETGTGFARKV 193 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC--GGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCS----HHHHHHHHHHHHHCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC--HHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCc----hhHHHHHHHHHhCCCHHHHHH
Confidence 777777777777776632 222 2334556777778888888887777754 456666666677777778877
Q ss_pred HHHHHHHHHhhh
Q 045023 347 LTAKICSMVEKF 358 (812)
Q Consensus 347 li~~I~~la~k~ 358 (812)
++..++.+..++
T Consensus 194 A~~aL~~~~~~~ 205 (211)
T 3ltm_A 194 AVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHhcCCCC
Confidence 777777766544
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.18 E-value=0.00024 Score=81.98 Aligned_cols=362 Identities=13% Similarity=0.114 Sum_probs=221.4
Q ss_pred HHHHHhhcCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccC-CCcceecc--CCCchhHHHHHHHHhcCCCCCccc
Q 045023 107 TNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQF-RDPNIRKK--PKCLDGLVKTLRDVVNSPYAPEYD 183 (812)
Q Consensus 107 ~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~-~~pyVRKk--A~~v~~lv~~L~~L~~~~~~pe~~ 183 (812)
+..+.+.++|.|+..+- .....+.++|.. .+|.+..- +-++|.|++.|+ .
T Consensus 78 l~~lv~~l~s~d~~~q~----------------~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~----~------- 130 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQL----------------QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG----K------- 130 (529)
T ss_dssp HHHHHHHHTSSCHHHHH----------------HHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT----C-------
T ss_pred HHHHHHHhcCCCHHHHH----------------HHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc----C-------
Confidence 35556666666654432 224556666643 44543221 124555555442 1
Q ss_pred cccCCChhHHHHHHHHHHhcCCCCchhhhHHH-----HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHHH--
Q 045023 184 IAGITDPFLHIRLLKLLHVLGQGDADASDCMN-----DILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRVL-- 255 (812)
Q Consensus 184 ~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~-----diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~l-- 255 (812)
..+|-.|......|..++..+++....+. ..|-.++. +....|...|+.++..+..+ +..+..
T Consensus 131 ---~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~------s~~~~v~e~A~~aL~nLa~~~~~~r~~i~ 201 (529)
T 3tpo_A 131 ---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA------SPHAHISEQAVWALGNIAGAGSAFRDLVI 201 (529)
T ss_dssp ---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 13567888899999988877655433332 23333332 23567888999999888653 444443
Q ss_pred ---HHHHHHHhhcCCCcc-----hHHHHHHHHHHHHhhC-----HHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCC
Q 045023 256 ---AINILGRFLSNRDNN-----IRYVALNMLMKAITVD-----AQAVQRHRATILECVKDLDASIRKRALELVYLLVNE 322 (812)
Q Consensus 256 ---~i~~L~~fL~~~d~n-----iryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~ 322 (812)
++..|..+|...+.. ++..+..+|..+.... ...+..-...++.+|+++|..++..|+..|..++..
T Consensus 202 ~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 202 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh
Confidence 356777888665433 2334555666665432 233455556678899999999999999999988865
Q ss_pred CC--HHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcCccchHHHHHHHHH
Q 045023 323 SN--VKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAGNFVKDEVWHALIV 390 (812)
Q Consensus 323 ~N--v~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g~~v~~e~i~~i~~ 390 (812)
.+ ... +++-|..++...+...+..++..|+.++......... .+..++.+|......+..+++..+..
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 53 222 3467888888899999999999999987432222222 23457888877766777788778888
Q ss_pred HHHhCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhcc
Q 045023 391 VISNASDLHGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH 465 (812)
Q Consensus 391 li~~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~ 465 (812)
+...+++.... ++..|+..+.. ....++..++|+|+.....-. ... ...+-+..++..|..+|..
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~-~~~------~~~l~~~g~i~~L~~LL~~- 431 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGT-VEQ------IVYLVHCGIIEPLMNLLSA- 431 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSC-HHH------HHHHHHTTCHHHHHHGGGC-
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCC-HHH------HHHHHHCcCHHHHHHHhcC-
Confidence 77666553332 44556666663 334578889999987643110 000 0001122345556566653
Q ss_pred CCCHHHHHHHHHHHHHHHcc---CCCChHHHH---------HHHHHhhCCCChHHHHHHHHHH
Q 045023 466 SSDITTKAMAMVALLKLSSR---FPSCSERIR---------DIIVQNKGSLVLELQQRSIEFN 516 (812)
Q Consensus 466 ~~~~~vk~~iLtAl~KL~~r---~p~~~~~i~---------~ll~~~~~s~~~evqqRA~ey~ 516 (812)
.++.++..+|.|+..+... .++ .+.+. +.|+...++.|.||+++|....
T Consensus 432 -~d~~i~~~~L~aL~nil~~~~~~~~-~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 432 -KDTKIIQVILDAISNIFQAAEKLGE-TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhHhccC-hHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678888888888776532 222 23332 3455566789999999997654
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.18 E-value=2.6e-05 Score=79.65 Aligned_cols=201 Identities=13% Similarity=0.165 Sum_probs=145.5
Q ss_pred cchHHHHHHHHHHhcCCCh-hHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH-----HhHhhhccc
Q 045023 232 GNAILYECVETIMSIEDNG-GLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ-----RHRATILEC 300 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~-~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~-----~h~~~i~~c 300 (812)
...+..+|+.++..+.... ..+. -++..|.++|.+.+..+|..++..|..+...++.... .-...++.+
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 3567778888777764322 1221 2578888999999999999999999999877554322 134567788
Q ss_pred ccccCHhHHHHHHHHHHHhcC--CCCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch-----hHHHHH
Q 045023 301 VKDLDASIRKRALELVYLLVN--ESNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK-----IWYIDQ 368 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n--~~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~-----~w~vd~ 368 (812)
|+++|..+|..++..|..|+. +.+... .++.|...+...+++++..++..++.++....... .-.+..
T Consensus 95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 174 (252)
T 4hxt_A 95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 174 (252)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHH
Confidence 999999999999999999994 233332 56778889998999999999999999986422111 126788
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhccccc
Q 045023 369 MLKVLSEAGNFVKDEVWHALIVVISNASDLHGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYGDML 434 (812)
Q Consensus 369 ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l 434 (812)
+++++......+...++..+..+....++.... ++..|...+.+ ....++..++|+++..+..-
T Consensus 175 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 175 LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC--CcHHHHHHHHHHHHHHHcCC
Confidence 999988766677777777777777655554433 34566666653 33467889999999887653
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.09 E-value=2.9e-05 Score=77.46 Aligned_cols=175 Identities=12% Similarity=0.135 Sum_probs=128.3
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHHHhcC--CCCHHH-
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILECVKDLDASIRKRALELVYLLVN--ESNVKP- 327 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~n--~~Nv~~- 327 (812)
....|.++|.+.|..+|.-|+..|..+...+++..+. -...++.+|+++|..+|..|+..|..|+. +.+...
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3567888899999999999999999998766544322 33567888999999999999999999983 344444
Q ss_pred ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch-----hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc
Q 045023 328 ----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK-----IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398 (812)
Q Consensus 328 ----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~-----~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l 398 (812)
.++.|+..+...+.+.+..++..++.++....... .-.+..++++|......+...++..+..+....++.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 35778888988899999999999999985322111 125778888888766667777777777777665554
Q ss_pred HHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhccc
Q 045023 399 HGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 399 ~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~ 432 (812)
+.. ++..|...+.. ....++..++|+++..+.
T Consensus 173 ~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence 433 34556555552 345678889999987754
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.09 E-value=6.6e-05 Score=75.14 Aligned_cols=182 Identities=20% Similarity=0.215 Sum_probs=107.4
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYL 336 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl 336 (812)
+..|...|.+.++.+|..++..|..+.. +.. ...++.+|.|+|..+|..++..|..+.++.- ++.|...+
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~~----~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA----VEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGG----HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC--ccH----HHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHHH
Confidence 4555666777777777777777776543 122 2344566777777888888887777766433 34444556
Q ss_pred hhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccch
Q 045023 337 EISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQ 416 (812)
Q Consensus 337 ~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~ 416 (812)
.+.|+..|..++..++.+... .++..|...+.+ ..
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~-------------------------------------------~~~~~L~~~l~d--~~ 125 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDE-------------------------------------------RAVEPLIKALKD--ED 125 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCG-------------------------------------------GGHHHHHHHTTC--SS
T ss_pred cCCCHHHHHHHHHHHHHhCcH-------------------------------------------HHHHHHHHHHhC--CC
Confidence 666777777777776665320 122333443332 23
Q ss_pred HHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHH
Q 045023 417 ESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDI 496 (812)
Q Consensus 417 ~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~l 496 (812)
..++..++|.+|++++- +.+..|..++++ .++.||..++.++.++.. +.....
T Consensus 126 ~~vr~~a~~aL~~~~~~-------------------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~------~~~~~~ 178 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGDE-------------------RAVEPLIKALKD--EDGWVRQSAADALGEIGG------ERVRAA 178 (211)
T ss_dssp HHHHHHHHHHHHHHCCG-------------------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc------hhHHHH
Confidence 34566777777777541 123444445542 356778888777777732 334444
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhc
Q 045023 497 IVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 497 l~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
|.....+.+.+||..|.+.+.-+.
T Consensus 179 L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 179 MEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC
Confidence 444455677778888777666553
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.05 E-value=0.00026 Score=72.45 Aligned_cols=217 Identities=20% Similarity=0.175 Sum_probs=122.5
Q ss_pred CCCChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHH--HH---HHHHHHhhcCCCCHhHHHHHHHHHhccCc--hhh
Q 045023 65 PTHFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVL--ML---VTNSLKQDLNHTNQYIVGLALCALGNICS--AEM 137 (812)
Q Consensus 65 ~~~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~--~L---~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~--~e~ 137 (812)
+..+.|.+.++++.|++...++-+-.++..++..+.+.. +. ++..+.+-|.++++.++..|+.+|++++. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 345778999999999999999988888865544333321 11 34667788889999999999999999975 443
Q ss_pred HHH-----HHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhh
Q 045023 138 ARD-----LAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASD 212 (812)
Q Consensus 138 ~~~-----l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~ 212 (812)
.+. .++.+.+++.+.++.||+. .+..|..++..++...+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~------------------------------------a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQE------------------------------------ALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHH------------------------------------HHHHHHHHTTSCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHH------------------------------------HHHHHHHhhcCCchHHH
Confidence 332 3455555555555555443 44444444433322111
Q ss_pred HHH--HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 045023 213 CMN--DILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAIT 284 (812)
Q Consensus 213 ~l~--diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~ 284 (812)
.+. +.+..+..-. ++....|..+++.++..+... +.... -++..|..+|.+.++.+|..++..|..++.
T Consensus 133 ~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 133 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHTTHHHHHHHGG---GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHH---hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 110 1111111111 112345566666666665432 22111 134556666666666677777777766665
Q ss_pred hCHHHHHH-----hHhhhcccccccCHhHHHHHHHHHHHhc
Q 045023 285 VDAQAVQR-----HRATILECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 285 ~~p~~v~~-----h~~~i~~cL~d~D~sIr~~aLell~~l~ 320 (812)
.++...+. -...++.++.+.|..+|+.|...|..|+
T Consensus 210 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 55433221 1233555666666666666666666554
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.05 E-value=4.8e-05 Score=78.11 Aligned_cols=198 Identities=13% Similarity=0.116 Sum_probs=140.9
Q ss_pred cchHHHHHHHHHHhcCC-Chh----H-HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhccc
Q 045023 232 GNAILYECVETIMSIED-NGG----L-RVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILEC 300 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~-~~~----L-~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~c 300 (812)
...+..+|+..+..+-. +.. + ..-++..|..+|.+.++++|..++..|..+...++..... -...++.+
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence 44577777777644211 111 1 1125778889999999999999999999998766543221 34567889
Q ss_pred ccccCHhHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch-----hHHHHH
Q 045023 301 VKDLDASIRKRALELVYLLVNESNVK-------PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK-----IWYIDQ 368 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n~~Nv~-------~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~-----~w~vd~ 368 (812)
|++++..+|..|+..|..|+.....+ ..++.|+.++...+.+++..++..++.++....... .-.+..
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 184 (252)
T 4db8_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 184 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence 99999999999999999999877665 367888999998899999999999999986432211 235678
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhcc
Q 045023 369 MLKVLSEAGNFVKDEVWHALIVVISNASDLHGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYG 431 (812)
Q Consensus 369 ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~ 431 (812)
++++|......+...+...+..+...+++.... ++..|...+.+ ....++..++|+++..+
T Consensus 185 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 185 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC--SSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 888888776667777777777776555554333 34445554442 23457888999998765
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.05 E-value=0.00011 Score=72.90 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=91.0
Q ss_pred hhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhh
Q 045023 296 TILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSE 375 (812)
Q Consensus 296 ~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~ 375 (812)
.++.+|+|+|..+|..|++.|..+.++. .++.|+..+.+.|..+|..++..++.+.. .-.++.++++|..
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d 87 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKD 87 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcC
Confidence 3444445555555555555554444322 22333344444444445444444444321 0133444444443
Q ss_pred cCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHH
Q 045023 376 AGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAV 455 (812)
Q Consensus 376 ~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi 455 (812)
....+...++..+..+ ..+ .++..|...+.+ ....++..++|.+|.+++- +.+
T Consensus 88 ~~~~vr~~a~~aL~~~--~~~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~-------------------~~~ 140 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQI--GDE----RAVEPLIKALKD--EDWFVRIAAAFALGEIGDE-------------------RAV 140 (201)
T ss_dssp SSHHHHHHHHHHHHHH--CCG----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHTCG-------------------GGH
T ss_pred CCHHHHHHHHHHHHHh--CcH----HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH-------------------HHH
Confidence 3323333333322222 111 133445555542 2345677888888888642 133
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 456 DVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 456 ~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
+.|..++.+ .++.+|..++.++.++. .+.....|.....+.+.+||..|.+...-+
T Consensus 141 ~~L~~~l~d--~~~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 141 EPLIKALKD--EDGWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHTTC--SSHHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 445555543 35788888888888872 133444455555667888888888876655
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.02 E-value=8.4e-05 Score=73.77 Aligned_cols=184 Identities=18% Similarity=0.183 Sum_probs=133.9
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDY 335 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~y 335 (812)
....+...|.+.++.+|+.|+..|..+.. +. ....++.+|+|+|..+|..|+..|..+.++.. ++.|...
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERA----VEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG----HHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH----HHHHHHH
Confidence 35666778899999999999999987753 12 23456678899999999999999999987654 4555567
Q ss_pred hhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccc
Q 045023 336 LEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIE 415 (812)
Q Consensus 336 l~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~ 415 (812)
+.+.++.+|..++..++.+.. ...+..+++++......|...++..+..+ ..+ .++..|...+.+ .
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--~~~----~~~~~L~~~l~d--~ 150 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE----RAVEPLIKALKD--E 150 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--TCG----GGHHHHHHHTTC--S
T ss_pred HcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCH----HHHHHHHHHHcC--C
Confidence 788899999999999988753 23677788888766556666666555544 122 245566666653 3
Q ss_pred hHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 045023 416 QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSS 484 (812)
Q Consensus 416 ~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~ 484 (812)
...++..++|.+|++++- +.+..|..++++ .++.+|.....++.++-.
T Consensus 151 ~~~vr~~A~~aL~~~~~~-------------------~~~~~L~~~l~d--~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGGE-------------------RVRAAMEKLAET--GTGFARKVAVNYLETHKS 198 (201)
T ss_dssp SHHHHHHHHHHHHHHCSH-------------------HHHHHHHHHHHH--CCHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHhCch-------------------hHHHHHHHHHhC--CCHHHHHHHHHHHHHHHh
Confidence 446789999999999642 355666666654 468899999999888654
No 55
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.54 E-value=0.0017 Score=64.34 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHhcCC-ChhHHH-----HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHH-----hHhhhccc
Q 045023 232 GNAILYECVETIMSIED-NGGLRV-----LAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQR-----HRATILEC 300 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~-~~~L~~-----l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~-----h~~~i~~c 300 (812)
...+..+|+.++..+.. +++.+. -++..|..+|.+.++.+|..|+..|..+...++...+. -...++.+
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 45677788888777753 333221 25778889999999999999999999998766543222 34567889
Q ss_pred ccccCHhHHHHHHHHHHHhcCC--CCHHH-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhh
Q 045023 301 VKDLDASIRKRALELVYLLVNE--SNVKP-----LTKELIDYLEISDQEFKGDLTAKICSMVEK 357 (812)
Q Consensus 301 L~d~D~sIr~~aLell~~l~n~--~Nv~~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k 357 (812)
|.++|..+|..|+..|..|+.. .+... .++.|+..+...+.+.+..++..++.++..
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999843 33333 567888899888999999999999999864
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.085 Score=62.65 Aligned_cols=448 Identities=13% Similarity=0.153 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHcCCCCCChhHHHH-Hh--hccCCCCchhHHHHHHHHhcccchhH-HHHHHHHHH-----hhcC-CCC
Q 045023 49 RHRNLAKLMFIHMLGYPTHFGQMECL-KS--IASAGFPEKRIGYLGLMLLLDERQEV-LMLVTNSLK-----QDLN-HTN 118 (812)
Q Consensus 49 r~~~l~KLiyl~~lG~~~~~~~~evi-kl--i~s~~~~~KRlgYL~~~~ll~~~~el-~~L~~Nsl~-----kDL~-s~n 118 (812)
..+++..++|-....|...|.++..+ +. ..++.-..|+++-+.+..+....++- --.+++.+. -|-. ..+
T Consensus 148 ~~~~~l~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 227 (778)
T 3opb_A 148 HVTYLLSIILQLLNKFKYNFKEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGND 227 (778)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred chhHHHHHHHHHHHHcCccccchhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCc
Confidence 56677777777777777777664432 22 23556677888888777766544332 122222222 1111 456
Q ss_pred HhHHHHHHHHHhccCchhhHHHH------HHHHHHhccCC-CcceeccC------CC---------chhHHHHHHHHhcC
Q 045023 119 QYIVGLALCALGNICSAEMARDL------APEVERLLQFR-DPNIRKKP------KC---------LDGLVKTLRDVVNS 176 (812)
Q Consensus 119 ~~i~~lAL~~Ls~I~~~e~~~~l------~~~V~~ll~~~-~pyVRKkA------~~---------v~~lv~~L~~L~~~ 176 (812)
+++.....-+..-=..|++|-.+ .+.+.+.+.+. +.-+.+.+ .| ....++.|.+++.+
T Consensus 228 ~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 228 PLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc
Confidence 77766555444444556665543 33344444321 11111111 01 12222333333321
Q ss_pred CCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHH-
Q 045023 177 PYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVL- 255 (812)
Q Consensus 177 ~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l- 255 (812)
.++ --|.-+-|.++-..-...+. ..+.+.+.+.+.+.+ ......--|+.++.+++.++..+..
T Consensus 308 ---~~i------r~lAavvL~KL~~~~~~~~~-si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~~~VKe~L 371 (778)
T 3opb_A 308 ---EDV------QIYSALVLVKTWSFTKLTCI-NLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLKASVKIMI 371 (778)
T ss_dssp ---GGG------HHHHHHHHHHHTGGGTCTTC-CHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred ---HHH------HHHHHHHHHHHhcCCCCCcC-cHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCCHHHHHHH
Confidence 010 01111222221111111110 111222222222221 1111255566666666555443322
Q ss_pred -----HHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCHH---------------------------------HHHH-hH-
Q 045023 256 -----AINILGRFLSN-RDNNIRYVALNMLMKAITVDAQ---------------------------------AVQR-HR- 294 (812)
Q Consensus 256 -----~i~~L~~fL~~-~d~niryvaL~~L~~l~~~~p~---------------------------------~v~~-h~- 294 (812)
++..|..++.+ .+..+.|-+|..|..+....++ -+.. .+
T Consensus 372 ~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~ 451 (778)
T 3opb_A 372 RSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK 451 (778)
T ss_dssp HHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence 24445555553 5667777777777776642210 0111 11
Q ss_pred --------hhhcccccccCHhHHHHHHHHHHHhcCCCCHHH-H-----HHHHHHHhhhcCHH---HHHHHHHHHHHHHhh
Q 045023 295 --------ATILECVKDLDASIRKRALELVYLLVNESNVKP-L-----TKELIDYLEISDQE---FKGDLTAKICSMVEK 357 (812)
Q Consensus 295 --------~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~-I-----v~eLl~yl~~~d~~---~~~~li~~I~~la~k 357 (812)
..++.+++..+..+|..|..++++|+.....+. + ++-|+.++...... .|..+..++++++..
T Consensus 452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF 531 (778)
T ss_dssp HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 224466888899999999999999986655443 3 36688888765433 788899999988742
Q ss_pred ------hCC-chhHHHHHHHHHHhh-cCcc---------c----hHHHHHHHHHHHHhC----CCcHHHHHHH--HHHHH
Q 045023 358 ------FSP-DKIWYIDQMLKVLSE-AGNF---------V----KDEVWHALIVVISNA----SDLHGYTVRA--LYRAV 410 (812)
Q Consensus 358 ------~~~-~~~w~vd~ll~lL~~-~g~~---------v----~~e~i~~i~~li~~~----p~l~~~~v~~--L~~~l 410 (812)
|+. ...-.+..|+++|.. .+.. . ..+..-.+..+.... .+.+..++.. .+..|
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L 611 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI 611 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence 221 112578889998873 1211 1 446676777776543 1345545442 33333
Q ss_pred hhc--cchHHHHHHHHHhhhhcccccccC-ccccccCCCCccChhh--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHcc
Q 045023 411 QTS--IEQESLVRVAIWCIGEYGDMLVNN-VGVLNIEDPITVTESD--AVDVVEIAIKHHSSDITTKAMAMVALLKLSSR 485 (812)
Q Consensus 411 ~~~--~~~~~l~~~~~WiiGEY~~~l~~~-~~~~~~~~~~~v~~~~--vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r 485 (812)
.+- ..+..++++++|++.-....-..- ..+...+ ++.. =+++|..++. ..+..+|..+..|++=+...
T Consensus 612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~-----~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE-----NPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS-----SHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc-----CchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCC
Confidence 321 245678999999998775421110 0111100 1111 1455555554 35789999999999998765
Q ss_pred CCCC-------hHHHHHHHHHhhC-CCChHHHHHHHHHHHHh
Q 045023 486 FPSC-------SERIRDIIVQNKG-SLVLELQQRSIEFNSIV 519 (812)
Q Consensus 486 ~p~~-------~~~i~~ll~~~~~-s~~~evqqRA~ey~~Ll 519 (812)
.|.. ..-+..++..+.. +.+.++|.|+.....=+
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGL 726 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 5431 2233344444544 58999999998765544
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.45 E-value=0.00094 Score=67.37 Aligned_cols=190 Identities=11% Similarity=0.086 Sum_probs=127.6
Q ss_pred HHHHhhcCCCCHhHHHHHHHHHhccC-------chhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCCC
Q 045023 108 NSLKQDLNHTNQYIVGLALCALGNIC-------SAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYAP 180 (812)
Q Consensus 108 Nsl~kDL~s~n~~i~~lAL~~Ls~I~-------~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~p 180 (812)
+.+..=|.+.|+.++..||-+|..+- .....+.+.+.+.+++.+.|.-|-=+| ++.|+.|+.+.
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A------~r~L~~LLe~v--- 106 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKA------LRALGYLVKDV--- 106 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHH------HHHHHHHHTTC---
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHcCC---
Confidence 34555567889999999999988763 346778888888888888776553222 33333333221
Q ss_pred ccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 045023 181 EYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINIL 260 (812)
Q Consensus 181 e~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L 260 (812)
+-+++...++.+.|..+.+ ..+..+..|++...-.+..- .+....++.|
T Consensus 107 ------------------------pL~~~~y~Kl~~aL~dlik------~~~~il~~eaae~Lgklkv~-~~~~~V~~~l 155 (265)
T 3b2a_A 107 ------------------------PMGSKTFLKAAKTLVSLLE------SPDDMMRIETIDVLSKLQPL-EDSKLVRTYI 155 (265)
T ss_dssp ------------------------CBCHHHHHHHHHHHHHHTT------SCCHHHHHHHHHHHHHCCBS-CCCHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHHhc------CCCchHHHHHHHHhCcCCcc-cchHHHHHHH
Confidence 1122222333333333332 12344566777666655322 1223467899
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhh--CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 045023 261 GRFLSNRDNNIRYVALNMLMKAITV--DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLE 337 (812)
Q Consensus 261 ~~fL~~~d~niryvaL~~L~~l~~~--~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~ 337 (812)
.+++.|+|+.+|-.||+.|..+... |++.+..-...|-+.|+..|++++.+||+.+..+.+..=.++++.++..-+.
T Consensus 156 ~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 156 NELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 9999999999999999999999875 3555655556677789999999999999999999988777777776666544
No 58
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.41 E-value=0.0014 Score=71.37 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=119.2
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRK 310 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~ 310 (812)
.+.-|.=-|+|++..|..++ +.......+.+.|.++++-+|=-|+-+..++....|+.+++....+-+++.|.++.+--
T Consensus 116 ~N~~iR~lALRtL~~I~~~~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~ 194 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDST-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQY 194 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHH
T ss_pred CcHhHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHH
Confidence 34566777888888886443 44556778888899999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhhc---CHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHhhcCccchHHHHH
Q 045023 311 RALELVYLLVNESNVKPLTKELIDYLEIS---DQEFKGDLTAKICSMVEKF-SPDKIWYIDQMLKVLSEAGNFVKDEVWH 386 (812)
Q Consensus 311 ~aLell~~l~n~~Nv~~Iv~eLl~yl~~~---d~~~~~~li~~I~~la~k~-~~~~~w~vd~ll~lL~~~g~~v~~e~i~ 386 (812)
.|+-+++.++..+ +.-+..|+..+... ++--.-++++.+..++..- +.....+++.+..+|+..++-|.-|++.
T Consensus 195 ~Al~lL~ei~~~d--~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k 272 (355)
T 3tjz_B 195 HALGLLYHVRKND--RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAAS 272 (355)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999998644 33455555555443 3333344555444444333 2345788999999999888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccC
Q 045023 387 ALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHS 466 (812)
Q Consensus 387 ~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~ 466 (812)
.|+.+-...+.....++..|-.++.. .++ .++-+++-.+.+....-.+ .++.. -.| ++.++.+
T Consensus 273 ~I~~l~~~~~~~~~~a~~~L~~fLss-~d~-niryvaLr~L~~l~~~~P~-----------~v~~~-n~~-ie~li~d-- 335 (355)
T 3tjz_B 273 AIVNLPGCSAKELAPAVSVLQLFCSS-PKA-ALRYAAVRTLNKVAMKHPS-----------AVTAC-NLD-LENLVTD-- 335 (355)
T ss_dssp HHTC-----------CCCTHHHHHHS-SSS-SSHHHHHHCC---------------------------------------
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHcC-CCc-hHHHHHHHHHHHHHHHCcH-----------HHHHH-HHH-HHHHccC--
Confidence 88876442333444444444444442 222 2444555555544332111 11100 001 2233332
Q ss_pred CCHHHHHHHHHHHHHH
Q 045023 467 SDITTKAMAMVALLKL 482 (812)
Q Consensus 467 ~~~~vk~~iLtAl~KL 482 (812)
.+..+..+.+|++.|-
T Consensus 336 ~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 336 ANRSIATLAITTLLKT 351 (355)
T ss_dssp ----------------
T ss_pred CcHhHHHHHHHHhhhc
Confidence 2456777888888885
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.29 E-value=0.027 Score=63.50 Aligned_cols=321 Identities=11% Similarity=0.097 Sum_probs=186.0
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhHHH-----HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC-hhHHHH-----H
Q 045023 188 TDPFLHIRLLKLLHVLGQGDADASDCMN-----DILAQVATKTESNKNAGNAILYECVETIMSIEDN-GGLRVL-----A 256 (812)
Q Consensus 188 ~dpwlqv~lL~lL~~l~~~~~~~~~~l~-----diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~-~~L~~l-----~ 256 (812)
.+|-.|......|+.++..++.....+. ..|-+++. +.+..+..+|+.++..+... ++.+.. +
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~ 87 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR------SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG 87 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT------SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 3667788899999988876654332222 22323332 23567889999999988654 444433 3
Q ss_pred HHHHHHhhc-CCCcchHHHHHHHHHHHHhhC--HH-HHHHhHhhhccccc--------c--------cCHhHHHHHHHHH
Q 045023 257 INILGRFLS-NRDNNIRYVALNMLMKAITVD--AQ-AVQRHRATILECVK--------D--------LDASIRKRALELV 316 (812)
Q Consensus 257 i~~L~~fL~-~~d~niryvaL~~L~~l~~~~--p~-~v~~h~~~i~~cL~--------d--------~D~sIr~~aLell 316 (812)
+..|.++|. +.+.+++.-+...|..+...+ .. +++.-...++.+|. + .|..+.+.|.-.|
T Consensus 88 i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL 167 (457)
T 1xm9_A 88 IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167 (457)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence 678889998 788999999999999988653 12 33433455666672 1 4678899999999
Q ss_pred HHhcCC-CCHH------HHHHHHHHHhhh------cCHHHHHHHHHHHHHHHhh--------------------------
Q 045023 317 YLLVNE-SNVK------PLTKELIDYLEI------SDQEFKGDLTAKICSMVEK-------------------------- 357 (812)
Q Consensus 317 ~~l~n~-~Nv~------~Iv~eLl~yl~~------~d~~~~~~li~~I~~la~k-------------------------- 357 (812)
..|+.. +|.. .+++-|..++.. .|...+..++..+..++-+
T Consensus 168 ~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (457)
T 1xm9_A 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247 (457)
T ss_dssp HHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------
T ss_pred HHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccccccc
Confidence 999864 2322 234446666654 2344454444444444310
Q ss_pred --h----------------------CCchhH-----HHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCc-----H---
Q 045023 358 --F----------------------SPDKIW-----YIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDL-----H--- 399 (812)
Q Consensus 358 --~----------------------~~~~~w-----~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l-----~--- 399 (812)
| +...+| .+..++.+|....+ .+.+.+...+..+...+.+. +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v 327 (457)
T 1xm9_A 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG 327 (457)
T ss_dssp ------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHH
T ss_pred chhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHH
Confidence 0 001122 34566777776543 44555555666665544331 1
Q ss_pred --HHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCC----CHHHHH
Q 045023 400 --GYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSS----DITTKA 473 (812)
Q Consensus 400 --~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~----~~~vk~ 473 (812)
..++..|.+.+.. ..+.+++.++|+++..+..-.. .. .+. ...+..|-.++..... +.++..
T Consensus 328 ~~~~~l~~Lv~LL~~--~~~~v~~~A~~aL~nls~~~~~-~~--------~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 328 LKEKGLPQIARLLQS--GNSDVVRSGASLLSNMSRHPLL-HR--------VMG-NQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp TTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSGGG-HH--------HHH-HHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred HHcCCchHHHHHHhC--CCHhHHHHHHHHHHHHhcCHHH-HH--------HHH-HhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 1233455665553 3456788999999988653111 00 111 1233334444544221 246888
Q ss_pred HHHHHHHHHHccCCCCh------HHHHHHHHHhhCCCChHHHHHHHHHHHHhccCHHHH
Q 045023 474 MAMVALLKLSSRFPSCS------ERIRDIIVQNKGSLVLELQQRSIEFNSIVEKHQNIR 526 (812)
Q Consensus 474 ~iLtAl~KL~~r~p~~~------~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~~~~~ 526 (812)
.++.++..+....++.. .-+..+.+...+..+.+++..|+....-+-.+.++|
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 88888888886665421 223333333333347899998887665443555554
No 60
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.25 E-value=0.0028 Score=64.83 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=87.9
Q ss_pred HHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHH----HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 045023 256 AINILGRFLS-NRDNNIRYVALNMLMKAITVDAQ----AVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTK 330 (812)
Q Consensus 256 ~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~----~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~ 330 (812)
.++.|.+.+. +++.++|..|+.+|..++..-.. .+..-...++.++.|....+|..+.+.+..++...++..+++
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~ 136 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQE 136 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777784 78889999999999999854222 233334567788999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCC
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSP 360 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~ 360 (812)
.|..++.+.++..|..++..|+.++.++.+
T Consensus 137 ~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 137 SIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 999999988999999999999998887754
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.0019 Score=62.64 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=91.2
Q ss_pred ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc--CCCCHH
Q 045023 249 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLV--NESNVK 326 (812)
Q Consensus 249 ~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~--n~~Nv~ 326 (812)
.|++....+.=++.+++++|..-|.+||+-+..+...++..+.++...++.+|+|.|.-+|-.|.|.|..++ |+. ++
T Consensus 138 nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lR 216 (253)
T 2db0_A 138 NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LR 216 (253)
T ss_dssp CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HH
Confidence 566666777888899999999999999999999999999999999999999999999999999999998776 444 88
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la 355 (812)
.++.+-++-+.+.......++..+++.++
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 88888888777777777777777777665
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.15 E-value=0.024 Score=63.86 Aligned_cols=76 Identities=16% Similarity=0.004 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChH-----HH-----HHHHHHhhCCCChHHHHHHHHHHHHhcc
Q 045023 452 SDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSE-----RI-----RDIIVQNKGSLVLELQQRSIEFNSIVEK 521 (812)
Q Consensus 452 ~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~-----~i-----~~ll~~~~~s~~~evqqRA~ey~~Ll~~ 521 (812)
.+++..|-.++... .++.++.....|+..++........ .+ ...|-....+.+.++|..|+-...-+..
T Consensus 282 ~~~l~~L~~lL~~~-~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 282 SDAIRTYLNLMGKS-KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHhhc-CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 35666666666543 4589999999999999865432111 11 2344555677889999999988887876
Q ss_pred CHHHHHH
Q 045023 522 HQNIRST 528 (812)
Q Consensus 522 ~~~~~~~ 528 (812)
+++.+..
T Consensus 361 ~~~~~~~ 367 (457)
T 1xm9_A 361 HPLLHRV 367 (457)
T ss_dssp SGGGHHH
T ss_pred CHHHHHH
Confidence 6555443
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.90 E-value=0.16 Score=58.92 Aligned_cols=94 Identities=20% Similarity=0.021 Sum_probs=67.5
Q ss_pred CChhHHHHHhhccCCCCchhHHHHHHHHhcccchhHHHH-----HHHHHHhhcCCCCHhHHHHHHHHHhccCc---hhhH
Q 045023 67 HFGQMECLKSIASAGFPEKRIGYLGLMLLLDERQEVLML-----VTNSLKQDLNHTNQYIVGLALCALGNICS---AEMA 138 (812)
Q Consensus 67 ~~~~~evikli~s~~~~~KRlgYL~~~~ll~~~~el~~L-----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~---~e~~ 138 (812)
+.....+|+++.+.+...+.-+-.++..+...+.+.-.. .+..|.+=|.++++.++..|..+|.+|+. .+--
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 456677788898888888887777777776544443211 45677778899999999999999999986 4433
Q ss_pred HH-----HHHHHHHhccC-CCcceeccC
Q 045023 139 RD-----LAPEVERLLQF-RDPNIRKKP 160 (812)
Q Consensus 139 ~~-----l~~~V~~ll~~-~~pyVRKkA 160 (812)
.. .+|.+.++|.+ .++.+++.|
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~a 154 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVI 154 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHH
Confidence 32 36777888876 566677776
No 64
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.79 E-value=0.022 Score=62.14 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=160.1
Q ss_pred HHHHHHHHHHhcCCChhHHHH-----HHHHHHHhhcC-----------CCcchHHHHHHHHHHHHhhCH---HHHH--H-
Q 045023 235 ILYECVETIMSIEDNGGLRVL-----AINILGRFLSN-----------RDNNIRYVALNMLMKAITVDA---QAVQ--R- 292 (812)
Q Consensus 235 Vl~e~v~~i~~i~~~~~L~~l-----~i~~L~~fL~~-----------~d~niryvaL~~L~~l~~~~p---~~v~--~- 292 (812)
.+..|+.++.++..+++.|.. ++..|..+|.. .++.+|.-|...|..+...+. ..+. .
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 355888888888877776543 45677777732 235689999999999986653 2332 2
Q ss_pred hHhhhcccccccCHhHHHHHHHHHHHhcCC---CCHHHH-----HHHHHHHhh-hcCHHHHHHHHHHHHHHHhhhCCc--
Q 045023 293 HRATILECVKDLDASIRKRALELVYLLVNE---SNVKPL-----TKELIDYLE-ISDQEFKGDLTAKICSMVEKFSPD-- 361 (812)
Q Consensus 293 h~~~i~~cL~d~D~sIr~~aLell~~l~n~---~Nv~~I-----v~eLl~yl~-~~d~~~~~~li~~I~~la~k~~~~-- 361 (812)
-...++.+|+++|..++..|.-.|..|+.. .|-..| ++.|...|. ..+.+.++.++..+..++.....+
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 266788899999999999999999998853 344444 566777654 467889999999999888521111
Q ss_pred ----hhHHHHHHHHHHhhcCcc----chHHHHHHHHHHHH---hCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHH
Q 045023 362 ----KIWYIDQMLKVLSEAGNF----VKDEVWHALIVVIS---NASDLHGY-----TVRALYRAVQTSIEQESLVRVAIW 425 (812)
Q Consensus 362 ----~~w~vd~ll~lL~~~g~~----v~~e~i~~i~~li~---~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~W 425 (812)
..-.+..|+++|....+. +..++...+..+-. ..++.+.. ++..|+..|.. ....++.-++|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~ 285 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACG 285 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC--CChHHHHHHHH
Confidence 234677888888765432 55665555555543 35554432 45667777763 33457888999
Q ss_pred hhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC
Q 045023 426 CIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS 488 (812)
Q Consensus 426 iiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~ 488 (812)
+++..+..-.+.. ..+-+...+..|..++.+ .+..+|.....|+..|+...|.
T Consensus 286 aL~nLa~~~~~~~--------~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 286 TLWNLSARNPKDQ--------EALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHTSSCHHHH--------HHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHH--------HHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHH
Confidence 9998763211100 011223455656555543 3678999999999999987765
No 65
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.79 E-value=0.28 Score=60.17 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC
Q 045023 416 QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF 486 (812)
Q Consensus 416 ~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~ 486 (812)
+..++..++|++|.|++.+.....+. ..++..+-..+. ++.|+.+...|+.++....
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~~~~l----------~~vl~~l~~~l~----~~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADHPVMI----------NSVLPLVLHALG----NPELSVSSVSTLKKICREC 558 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHCHHHH----------TTTHHHHHHHTT----CGGGHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCHHHH----------HHHHHHHHHHhC----CchHHHHHHHHHHHHHHHH
Confidence 45688899999999998764322111 123333322332 3788999999999998655
No 66
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.67 E-value=1.2 Score=51.53 Aligned_cols=335 Identities=11% Similarity=0.088 Sum_probs=198.6
Q ss_pred CChhHHHHHHHHHHhcCCCCchhhhHHH-----HHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC--hhHHH-----H
Q 045023 188 TDPFLHIRLLKLLHVLGQGDADASDCMN-----DILAQVATKTESNKNAGNAILYECVETIMSIEDN--GGLRV-----L 255 (812)
Q Consensus 188 ~dpwlqv~lL~lL~~l~~~~~~~~~~l~-----diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~--~~L~~-----l 255 (812)
.++-.|..-...|+.++..+.+....+. ..|-+++. +.+..|..+|+.++..+... ++-+. -
T Consensus 60 ~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~------s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G 133 (584)
T 3l6x_A 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD------HPKKEVHLGACGALKNISFGRDQDNKIAIKNCD 133 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG------CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC------CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcC
Confidence 4677788888888888776554433332 22223332 23567899999999988752 43322 2
Q ss_pred HHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCH---HHHHHhHhhhcccc------------------cccCHhHHHHHH
Q 045023 256 AINILGRFLSN-RDNNIRYVALNMLMKAITVDA---QAVQRHRATILECV------------------KDLDASIRKRAL 313 (812)
Q Consensus 256 ~i~~L~~fL~~-~d~niryvaL~~L~~l~~~~p---~~v~~h~~~i~~cL------------------~d~D~sIr~~aL 313 (812)
++..|.++|.+ .+.+++..+...|..+...+. .++......++..+ ...|..++..|.
T Consensus 134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa 213 (584)
T 3l6x_A 134 GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213 (584)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHH
Confidence 57788889976 577888888888877765331 23333333333332 134789999999
Q ss_pred HHHHHhcCCC-C-HHHH------HHHHHHHhhh------cCHHHHHHHHHHHHHHHhhh---------------------
Q 045023 314 ELVYLLVNES-N-VKPL------TKELIDYLEI------SDQEFKGDLTAKICSMVEKF--------------------- 358 (812)
Q Consensus 314 ell~~l~n~~-N-v~~I------v~eLl~yl~~------~d~~~~~~li~~I~~la~k~--------------------- 358 (812)
.+|..|+..+ | -+.| ++-|+.|++. .+...++.++..+..++-+.
T Consensus 214 ~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~ 293 (584)
T 3l6x_A 214 GCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNT 293 (584)
T ss_dssp HHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------------
T ss_pred HHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccc
Confidence 9999997543 3 3333 3467778764 35667788888887776432
Q ss_pred ----CCchhHH-----HHHHHHHHhhcC-ccchHHHHHHHHHHHHhCC----Cc-----HHHHHHHHHHHHhhccchHHH
Q 045023 359 ----SPDKIWY-----IDQMLKVLSEAG-NFVKDEVWHALIVVISNAS----DL-----HGYTVRALYRAVQTSIEQESL 419 (812)
Q Consensus 359 ----~~~~~w~-----vd~ll~lL~~~g-~~v~~e~i~~i~~li~~~p----~l-----~~~~v~~L~~~l~~~~~~~~l 419 (812)
+...+|. +..++.+|...+ ..+.+.++..+..+..... .. +..++..|.+.|.. ....+
T Consensus 294 ~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s--~~~~v 371 (584)
T 3l6x_A 294 GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN--EHERV 371 (584)
T ss_dssp --CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC--SCHHH
T ss_pred cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC--CCHHH
Confidence 1112332 456778886554 3455555556666654321 11 13456667776663 34567
Q ss_pred HHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHccCCCChHH-
Q 045023 420 VRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSS------DITTKAMAMVALLKLSSRFPSCSER- 492 (812)
Q Consensus 420 ~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~------~~~vk~~iLtAl~KL~~r~p~~~~~- 492 (812)
+..++|.++.-+..-.+ . ..+ ....+.-|..+|.+... +.++...++-++.-+....++....
T Consensus 372 ~~~A~~aL~nLs~~~~~-~--------~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I 441 (584)
T 3l6x_A 372 VKAASGALRNLAVDARN-K--------ELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441 (584)
T ss_dssp HHHHHHHHHHHHTTCSC-H--------HHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCChhH-H--------HHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999987653211 0 012 23344444445544321 3577777777777777665543222
Q ss_pred -----HHHHHHHhhC-CCChHHHHHHHHHHHHhccCHHHHHHhhhcCCCCcccccc
Q 045023 493 -----IRDIIVQNKG-SLVLELQQRSIEFNSIVEKHQNIRSTLVERMPVLDEATFS 542 (812)
Q Consensus 493 -----i~~ll~~~~~-s~~~evqqRA~ey~~Ll~~~~~~~~~ll~~mP~~~~~~~~ 542 (812)
|..+.+...+ +....++.=|.-...-+-+++++++.+... -|.+..|.
T Consensus 442 ~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~--G~~~~~f~ 495 (584)
T 3l6x_A 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE--GWKKSDFQ 495 (584)
T ss_dssp HHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTT--TCCGGGGC
T ss_pred HHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHc--CCCHHHhc
Confidence 2233333333 235666666666665555789999887763 66666554
No 67
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.67 E-value=0.17 Score=53.57 Aligned_cols=139 Identities=15% Similarity=0.165 Sum_probs=95.7
Q ss_pred HHHHHHH-hhcCCCcchHHHHHHHHHHHHhhCHHH---HHH--hHhhhcccccc-cCHhHHHHHHHHHHHhcCCC--CHH
Q 045023 256 AINILGR-FLSNRDNNIRYVALNMLMKAITVDAQA---VQR--HRATILECVKD-LDASIRKRALELVYLLVNES--NVK 326 (812)
Q Consensus 256 ~i~~L~~-fL~~~d~niryvaL~~L~~l~~~~p~~---v~~--h~~~i~~cL~d-~D~sIr~~aLell~~l~n~~--Nv~ 326 (812)
++..|.. +|.+.++++|--|+..|..++..+|.. +-. -...++.+|++ ++..+|+.|+-.|..|+..+ +..
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4566667 898999999999999999999877642 221 23456678884 58999999999999998432 232
Q ss_pred H-----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-----HHHHHHHHHhhcCccchHHHHHHHHHHHHh
Q 045023 327 P-----LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-----YIDQMLKVLSEAGNFVKDEVWHALIVVISN 394 (812)
Q Consensus 327 ~-----Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-----~vd~ll~lL~~~g~~v~~e~i~~i~~li~~ 394 (812)
. .+.-|...+...|..++.+++..|+.++...+..... ++..|+++|......+...+...+..++..
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 2 4456777778889999999999999998653222111 334566666555444555555555555544
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.087 Score=51.23 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=141.3
Q ss_pred hhhcccccccCHhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhhhc-CHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 045023 295 ATILECVKDLDASIRKRALELVYLLVNE--SNVKPLTKELIDYLEIS-DQEFKGDLTAKICSMVEKFSPDKIWYIDQMLK 371 (812)
Q Consensus 295 ~~i~~cL~d~D~sIr~~aLell~~l~n~--~Nv~~Iv~eLl~yl~~~-d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~ 371 (812)
+.++..|+|+==.+++.||.++..++.+ +=+..++++|+..++.+ -...-.++.+++|.++.--|.--+-.+..++.
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfa 114 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFA 114 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHH
Confidence 4456678776678999999999988754 55888999999998765 45677899999999997555444555556655
Q ss_pred HHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccCh
Q 045023 372 VLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTE 451 (812)
Q Consensus 372 lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~ 451 (812)
-...+...+.=.....+-.+.+.||++-..++..+...+.+...-+ +.++.-.||-.|+.-.. .|++
T Consensus 115 nyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~D--kl~aLnFi~alGen~~~-----------yv~P 181 (253)
T 2db0_A 115 NYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRED--KLTALNFIEAMGENSFK-----------YVNP 181 (253)
T ss_dssp HSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHH--HHHHHHHHHTCCTTTHH-----------HHGG
T ss_pred HHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHhccCcc-----------ccCc
Confidence 5555555566667777778889999998888888877666322222 44555556555543211 1111
Q ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 045023 452 SDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNS 517 (812)
Q Consensus 452 ~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~ 517 (812)
+++-+..++. ..+..||...+-++.+++...|..+..|...++.+. |.+-.|+..-.|-..
T Consensus 182 --fLprL~aLL~--D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~-D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 182 --FLPRIINLLH--DGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN-DTSSLVNKTVKEGIS 242 (253)
T ss_dssp --GHHHHHGGGG--CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCC-CSCHHHHHHHHHHHH
T ss_pred --chHHHHHHHc--CcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 2333444443 346899999999999999999988777877777765 444566666665443
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.56 E-value=0.054 Score=61.07 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=159.1
Q ss_pred HHHHHHHHHhcCCChhHHHH-----HHHHHHHhhcC-----------CCcchHHHHHHHHHHHHhhCH---HHHH---Hh
Q 045023 236 LYECVETIMSIEDNGGLRVL-----AINILGRFLSN-----------RDNNIRYVALNMLMKAITVDA---QAVQ---RH 293 (812)
Q Consensus 236 l~e~v~~i~~i~~~~~L~~l-----~i~~L~~fL~~-----------~d~niryvaL~~L~~l~~~~p---~~v~---~h 293 (812)
...|+.++.++..+++.|.. ++..|.++|.. .++.++.-|...|..+...++ ..+. ..
T Consensus 165 ~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp THHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 35889999999777766543 45677777731 235689999999999987664 2342 23
Q ss_pred HhhhcccccccCHhHHHHHHHHHHHhcCC---CCHHHH-----HHHHHHHh-hhcCHHHHHHHHHHHHHHHhhhCCc---
Q 045023 294 RATILECVKDLDASIRKRALELVYLLVNE---SNVKPL-----TKELIDYL-EISDQEFKGDLTAKICSMVEKFSPD--- 361 (812)
Q Consensus 294 ~~~i~~cL~d~D~sIr~~aLell~~l~n~---~Nv~~I-----v~eLl~yl-~~~d~~~~~~li~~I~~la~k~~~~--- 361 (812)
...++.+|+++|..++..|...|..|+.. .|...| ++.|...| ...+.+.++.++..++.++.....+
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 66788899999999999999999999763 344444 35677764 4457889999999998888521111
Q ss_pred ---hhHHHHHHHHHHhhcCcc----chHHHHHHHHHHHH---hCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHHh
Q 045023 362 ---KIWYIDQMLKVLSEAGNF----VKDEVWHALIVVIS---NASDLHGY-----TVRALYRAVQTSIEQESLVRVAIWC 426 (812)
Q Consensus 362 ---~~w~vd~ll~lL~~~g~~----v~~e~i~~i~~li~---~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~Wi 426 (812)
..-.+..|+++|....+. +..+....+..+-. ..++.+.. ++..|+..|.. ....++.-++|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~a 402 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGT 402 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHH
Confidence 234677888888765432 55665555555543 45554332 34566666653 334578889999
Q ss_pred hhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC
Q 045023 427 IGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS 488 (812)
Q Consensus 427 iGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~ 488 (812)
++..+..-.+.. ..+-+...+..|..++.. .+..+|.....|+..|+.+.|.
T Consensus 403 L~nLa~~~~~~~--------~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 403 LWNLSARNPKDQ--------EALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHSSCHHHH--------HHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCHHHH--------HHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHh
Confidence 998763211100 011233455555555543 3688999999999999988775
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.51 E-value=0.0076 Score=61.58 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=120.6
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCHHH----HHHhHhhhcccc-cccCHhHHHHHHHHHHHhcCC------CCHHHHH
Q 045023 261 GRFLSNRDNNIRYVALNMLMKAITVDAQA----VQRHRATILECV-KDLDASIRKRALELVYLLVNE------SNVKPLT 329 (812)
Q Consensus 261 ~~fL~~~d~niryvaL~~L~~l~~~~p~~----v~~h~~~i~~cL-~d~D~sIr~~aLell~~l~n~------~Nv~~Iv 329 (812)
...+.+++...|+-|+..|..++...+.. +.+-...+..++ +|.+..+|..|++.+-.|+.. .-+..++
T Consensus 21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567888999999999999988763321 122233445567 599999999999999988843 2356688
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC-CC-c-H---HHHH
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA-SD-L-H---GYTV 403 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~-p~-l-~---~~~v 403 (812)
+-|+..+.+.+..+|..+..++..++.... ...+++.++..|......+..+++..+..++... |+ . . ..++
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~ 178 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 888888888888999999999999987643 4567888888888776788899998888877664 43 2 2 2344
Q ss_pred HHHHHHHhhccchHHHHHHHHHhhhhccccc
Q 045023 404 RALYRAVQTSIEQESLVRVAIWCIGEYGDML 434 (812)
Q Consensus 404 ~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l 434 (812)
..|...+.+ ....++..+.-++|+.+..+
T Consensus 179 p~l~~~l~D--~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 179 TSLVKTLNE--PDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHTS--SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CChHHHHHHHHHHHHHHHHc
Confidence 555555543 33446667777777665443
No 71
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=96.45 E-value=0.024 Score=59.32 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=74.0
Q ss_pred CceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecC----ceeEeeeCCCCCCcCCCCCCCccE
Q 045023 695 PSIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPK----FLQLHLDPASGNTLPASGNGSITQ 770 (812)
Q Consensus 695 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK----~~kL~l~p~S~~~l~~~~~~~itQ 770 (812)
..-..|+++-|+|.+..+. ..+...|.++|.|+++.+|++|.+++.-|+ +++++..|.. ++|+|+.+ +.|
T Consensus 47 ~~GVLyED~~IQIg~kse~---~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~-~tI~p~~q--~qq 120 (273)
T 3hs8_A 47 NNGVLFENQLLQIGLKSEF---RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVD-PTVDGGAQ--VQQ 120 (273)
T ss_dssp SCEEEEECSSEEEEEEEEE---ETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCC-SCBCTTCE--EEE
T ss_pred CCcEEEeCCcEEEEEEEEE---eCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCC-CeECCCCE--EEE
Confidence 3467899999999996543 344788999999999999999999999887 6778887665 67888764 478
Q ss_pred EEEEEeCCCCCCCeEEEEEEEEEeCCeeeee
Q 045023 771 TLRVTNSQHGKKPLVMRTRIAYKLNNRDVLE 801 (812)
Q Consensus 771 ~~~i~n~~~~~k~l~lr~klsY~~~g~~~~e 801 (812)
.+.|.-...-.+.. -++++|.++|....-
T Consensus 121 ~i~v~~~~pF~~~P--~l~isf~~~g~~~~~ 149 (273)
T 3hs8_A 121 VVNIECISDFTEAP--VLNIQFRYGGTFQNV 149 (273)
T ss_dssp EEEEEECSCCCCCC--EEEEEEEETTEEEEE
T ss_pred EEEEEEcccccCCC--EEEEEEEECCeEEEE
Confidence 88876532211222 477888889986543
No 72
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.42 E-value=0.32 Score=59.94 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=67.6
Q ss_pred cCCCCchhHHHHHHHHhccc-----c---h-----hHHHHHHHHHHhhcCCC---CHhHHHHHHHHHhccCc---hhhHH
Q 045023 79 SAGFPEKRIGYLGLMLLLDE-----R---Q-----EVLMLVTNSLKQDLNHT---NQYIVGLALCALGNICS---AEMAR 139 (812)
Q Consensus 79 s~~~~~KRlgYL~~~~ll~~-----~---~-----el~~L~~Nsl~kDL~s~---n~~i~~lAL~~Ls~I~~---~e~~~ 139 (812)
+++...|..+++++..+.+. . + ++.-++++.+..+|+++ ++++|.-|+.++|.+++ ++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 56777888899988777532 1 1 56666677777788877 99999999999998865 47888
Q ss_pred HHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhc
Q 045023 140 DLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVN 175 (812)
Q Consensus 140 ~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~ 175 (812)
.+++.+.+++.++++-||-.| ...|..++.
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A------~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYA------AITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHH------HHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHH------HHHHHHHHh
Confidence 889999999988888887665 444555543
No 73
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.39 E-value=0.04 Score=58.48 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=98.5
Q ss_pred hhcc-cccccCHhHHHHHHHHHHHhcCCC-CHH-H-----HHHHHHHHhhh-cCHHHHHHHHHHHHHHHhhhCCchhH--
Q 045023 296 TILE-CVKDLDASIRKRALELVYLLVNES-NVK-P-----LTKELIDYLEI-SDQEFKGDLTAKICSMVEKFSPDKIW-- 364 (812)
Q Consensus 296 ~i~~-cL~d~D~sIr~~aLell~~l~n~~-Nv~-~-----Iv~eLl~yl~~-~d~~~~~~li~~I~~la~k~~~~~~w-- 364 (812)
.++. +|.+++..+|..|+..|..++..+ ..+ . .++-|+..+.. .+.++++.++.+|+.++..+++...-
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~ 164 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL 164 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3556 899999999999999999998543 222 2 45677888875 47899999999999999766543322
Q ss_pred ---HHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHhhccchHHHHHHHHHhhhhccc
Q 045023 365 ---YIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGY-----TVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 365 ---~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~-----~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~ 432 (812)
.+..|+++|......+..+++..+..+....++.+.+ ++..|+..|... ...++..++|++|....
T Consensus 165 ~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHh
Confidence 4568888888876677788887888888877776554 456677777632 33467778888876654
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.29 E-value=0.071 Score=58.02 Aligned_cols=263 Identities=10% Similarity=0.068 Sum_probs=153.0
Q ss_pred cCCCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhc-CCCCCccccccCCChhH
Q 045023 114 LNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVN-SPYAPEYDIAGITDPFL 192 (812)
Q Consensus 114 L~s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~-~~~~pe~~~~~~~dpwl 192 (812)
+-.+++...+.|+.+|++|+..+-.++.+-+. -.++.|++.|..-.. .+... ...+|=+
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~---------------G~l~~Lv~LL~~~~~~~~~~~-----~~~~~~~ 100 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL---------------GGLQAIAELLQVDCEMYGLTN-----DHYSITL 100 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHT---------------THHHHHHHHHHHHHHHHTTSC-----CHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHc---------------CCHHHHHHHHhcccccccccC-----CCCCHHH
Confidence 45566788899999999997665445432210 124445555432110 00000 0123556
Q ss_pred HHHHHHHHHhcCCCCchhhhHH---HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC--ChhHHH-----HHHHHHHH
Q 045023 193 HIRLLKLLHVLGQGDADASDCM---NDILAQVATKTESNKNAGNAILYECVETIMSIED--NGGLRV-----LAINILGR 262 (812)
Q Consensus 193 qv~lL~lL~~l~~~~~~~~~~l---~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~--~~~L~~-----l~i~~L~~ 262 (812)
|......|+.++..+......+ ...+..+..-.. +.+..|...++.++..+.. +..-+. -++..|.+
T Consensus 101 q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC---CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 8888888888887765433333 122333332221 2345677788877777654 233222 25677778
Q ss_pred hh-cCCCcchHHHHHHHHHHHHhhCH----HHH--HHhHhhhcccccccCH----hHHHHHHHHHHHhc-----CCCCHH
Q 045023 263 FL-SNRDNNIRYVALNMLMKAITVDA----QAV--QRHRATILECVKDLDA----SIRKRALELVYLLV-----NESNVK 326 (812)
Q Consensus 263 fL-~~~d~niryvaL~~L~~l~~~~p----~~v--~~h~~~i~~cL~d~D~----sIr~~aLell~~l~-----n~~Nv~ 326 (812)
+| .+.+.+++.-++..|..+....+ .++ ..-...++.+|++.+. .++..|.-.|..|+ +++|..
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 64 56778888888888888876332 222 1233445666765443 48888888888877 566655
Q ss_pred HH-----HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch-----hHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCC
Q 045023 327 PL-----TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK-----IWYIDQMLKVLSEAGNFVKDEVWHALIVVISNAS 396 (812)
Q Consensus 327 ~I-----v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~-----~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p 396 (812)
.+ ++-|...|...+.+.++.++..|+.++....... .-.+..|+++|......+..++...+..+..+.|
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 54 4667788888888899999999988874311111 1234555555554444455555555555555555
Q ss_pred CcH
Q 045023 397 DLH 399 (812)
Q Consensus 397 ~l~ 399 (812)
+.+
T Consensus 338 ~~~ 340 (354)
T 3nmw_A 338 AKY 340 (354)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.27 E-value=2.8 Score=51.46 Aligned_cols=197 Identities=10% Similarity=0.110 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHhhCHHHHHHhHhhhccc----cc-----ccCHhHHHHHHHHHHHhcCCCC----------HHHHH-H
Q 045023 271 IRYVALNMLMKAITVDAQAVQRHRATILEC----VK-----DLDASIRKRALELVYLLVNESN----------VKPLT-K 330 (812)
Q Consensus 271 iryvaL~~L~~l~~~~p~~v~~h~~~i~~c----L~-----d~D~sIr~~aLell~~l~n~~N----------v~~Iv-~ 330 (812)
+|--++++|.+++..+++.+.+|...++.+ +. ..+..++..+++.+..++...- +..|+ .
T Consensus 262 vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~ 341 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQ 341 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHH
Confidence 566778899999999998888887766543 21 4566899999999998875432 33344 2
Q ss_pred HHHHHhhh---------cCH--------------HHHHHHHHHHHHHHhhhCCchhHHHHHHHHH----Hhh-----cCc
Q 045023 331 ELIDYLEI---------SDQ--------------EFKGDLTAKICSMVEKFSPDKIWYIDQMLKV----LSE-----AGN 378 (812)
Q Consensus 331 eLl~yl~~---------~d~--------------~~~~~li~~I~~la~k~~~~~~w~vd~ll~l----L~~-----~g~ 378 (812)
-++.++.- .|+ ..|..+...+..++..|. +.++..++.. +.. ..+
T Consensus 342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----C
T ss_pred HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchh
Confidence 33334321 111 244455556666776665 2344444443 331 111
Q ss_pred -cchHHHHHHHHHHHHhC-------C------CcHHHHHHHHHHHHhhcc-chHHHHHHHHHhhhhcccccccCcccccc
Q 045023 379 -FVKDEVWHALIVVISNA-------S------DLHGYTVRALYRAVQTSI-EQESLVRVAIWCIGEYGDMLVNNVGVLNI 443 (812)
Q Consensus 379 -~v~~e~i~~i~~li~~~-------p------~l~~~~v~~L~~~l~~~~-~~~~l~~~~~WiiGEY~~~l~~~~~~~~~ 443 (812)
...+.++..+-.+..+. . ++....+..+...+.+.. .+..++..++|++|.|++.+. +..
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~--- 493 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ--- 493 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH---
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH---
Confidence 22333444333343211 1 333333444455555321 255678899999999998652 100
Q ss_pred CCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 045023 444 EDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSS 484 (812)
Q Consensus 444 ~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~ 484 (812)
-..++..+-..+. ..+..||.+.-.|+..+..
T Consensus 494 -------l~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 494 -------LIELMPILATFLQ--TDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp -------HHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHh
Confidence 1123332222222 2247788888888888765
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.022 Score=58.90 Aligned_cols=186 Identities=11% Similarity=0.153 Sum_probs=111.1
Q ss_pred HHhhcCCCCHhHHHHHHHHHhc-cCc--hhhH------HHHHHHHHHhc-cCCCcceeccCCCchhHHHHHHHHhcCCCC
Q 045023 110 LKQDLNHTNQYIVGLALCALGN-ICS--AEMA------RDLAPEVERLL-QFRDPNIRKKPKCLDGLVKTLRDVVNSPYA 179 (812)
Q Consensus 110 l~kDL~s~n~~i~~lAL~~Ls~-I~~--~e~~------~~l~~~V~~ll-~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~ 179 (812)
|..-+.|++...|--||..|+. +.. +++. ..+...+.+.+ +++|+.||..| ++.|..+. .++.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A------~~al~~la-~~l~ 93 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALA------AQSVELIC-DKLK 93 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHH------HHHHHHHH-HHHC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHH------HHHHHHHH-Hhcc
Confidence 4555678888888888888888 642 2332 45677888888 78898887655 33333332 1112
Q ss_pred -CccccccCCC-hhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh-cCCC---hhHH
Q 045023 180 -PEYDIAGITD-PFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMS-IEDN---GGLR 253 (812)
Q Consensus 180 -pe~~~~~~~d-pwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~-i~~~---~~L~ 253 (812)
++| . ||...-+-.+|..++...+...+.. .+|+..++. +++. +.+
T Consensus 94 ~~~f------~~~y~~~llp~ll~~l~dkk~~V~~aa----------------------~~al~~i~~~~~~~~~~~~l- 144 (249)
T 2qk1_A 94 TPGF------SKDYVSLVFTPLLDRTKEKKPSVIEAI----------------------RKALLTICKYYDPLASSGRN- 144 (249)
T ss_dssp TTTS------CHHHHHHHHHHHHHGGGCCCHHHHHHH----------------------HHHHHHHHHHSCTTCTTCTT-
T ss_pred cccc------cHHHHHHHHHHHHHHHcCCCHHHHHHH----------------------HHHHHHHHHHccccccCCcH-
Confidence 222 3 4554445555555543333332222 233333333 2110 112
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH---HHHHHhH-hh----hcccccccCHhHHHHHHHHHHHh---cCC
Q 045023 254 VLAINILGRFLSNRDNNIRYVALNMLMKAITVDA---QAVQRHR-AT----ILECVKDLDASIRKRALELVYLL---VNE 322 (812)
Q Consensus 254 ~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p---~~v~~h~-~~----i~~cL~d~D~sIr~~aLell~~l---~n~ 322 (812)
..++..|...|.++.+.+|.-++..|..++...+ ..+.+|. .. +..|+.|.+..+|..|.+.+..+ +.+
T Consensus 145 ~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 145 EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 2345666677888888999999999999987665 4555555 33 45788899999999988877664 344
Q ss_pred CCHHHHHHH
Q 045023 323 SNVKPLTKE 331 (812)
Q Consensus 323 ~Nv~~Iv~e 331 (812)
+.+...+.+
T Consensus 225 ~~~~p~l~~ 233 (249)
T 2qk1_A 225 NTFVKTLEH 233 (249)
T ss_dssp GGGHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.027 Score=58.20 Aligned_cols=135 Identities=6% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHhh-cCCCcchHHHHHHHHHHHHhhCH-HHHH-HhH----hhhcccccccCHhHHHHHHHHHHHhcCCC------
Q 045023 257 INILGRFL-SNRDNNIRYVALNMLMKAITVDA-QAVQ-RHR----ATILECVKDLDASIRKRALELVYLLVNES------ 323 (812)
Q Consensus 257 i~~L~~fL-~~~d~niryvaL~~L~~l~~~~p-~~v~-~h~----~~i~~cL~d~D~sIr~~aLell~~l~n~~------ 323 (812)
+..|.+.+ ..++..+|..|+++|..++..-. ..|+ +|. ..++..++|....+|..+-..+-+++..-
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~ 141 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS 141 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence 56666667 56677788999999998885322 2333 444 45678889998999888666665555433
Q ss_pred C-HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCC-------ch-hHHHHHHHHHHhhcCccchHHHHHHHHHH
Q 045023 324 N-VKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSP-------DK-IWYIDQMLKVLSEAGNFVKDEVWHALIVV 391 (812)
Q Consensus 324 N-v~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~-------~~-~w~vd~ll~lL~~~g~~v~~e~i~~i~~l 391 (812)
. ...+++.|+.++.+.+...|..++..|+.++..... .. .-++..+.+++......|++..+..+..+
T Consensus 142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3 779999999999988999999999999999977653 12 33445555555544444555544444433
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.18 E-value=0.002 Score=59.44 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYL 336 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl 336 (812)
...|..+|.+.++.+|+.|+..|..+.... ...++.+|+|+|..+|..|+..|..+.++ ..++.|...+
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-------~~~L~~~L~d~~~~vR~~A~~aL~~~~~~----~a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-------FEPLLESLSNEDWRIRGAAAWIIGNFQDE----RAVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-------HHHHHHGGGCSCHHHHHHHHHHHGGGCSH----HHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-------HHHHHHHHcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Confidence 456667788888888888888876554321 24456778888899999999888887763 4566666777
Q ss_pred hhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhh
Q 045023 337 EISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSE 375 (812)
Q Consensus 337 ~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~ 375 (812)
.+.|..+|..++..++.+.. .-.+..|++++..
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l~d 115 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGG------ERVRAAMEKLAET 115 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCS------HHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC
Confidence 77788888888888887652 1234455555543
No 79
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.15 E-value=0.054 Score=62.79 Aligned_cols=247 Identities=11% Similarity=0.120 Sum_probs=150.4
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhH-------hhhcccccccCHhHHHHHHHHHHHhcCCCC-HHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHR-------ATILECVKDLDASIRKRALELVYLLVNESN-VKP 327 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~-------~~i~~cL~d~D~sIr~~aLell~~l~n~~N-v~~ 327 (812)
.+..|..+|.+.|..+||-+++.|..++..+|+-+|++. ..++.+|.|+..-||..++-+|..|+..+. ++.
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 466778889999999999999999999999998777654 457888999999999999999999887542 222
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCc----cchHHHHHHHHHHHHhCCCcHHHH-
Q 045023 328 LTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGN----FVKDEVWHALIVVISNASDLHGYT- 402 (812)
Q Consensus 328 Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~----~v~~e~i~~i~~li~~~p~l~~~~- 402 (812)
|| .| +-.++.+++++...|. .+.+++...+..+++.++.-|.+.
T Consensus 203 lV----AF---------------------------EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 203 IV----AF---------------------------ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp HH----HH---------------------------TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HH----HH---------------------------hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 22 11 1245666777766543 677777777777887776544443
Q ss_pred ----HHHHHHHHhhcc----chHHHHHHHHHhhhhcccccccCcccc--ccCCCCccChhhHHHHHHHHHhccCCCHHHH
Q 045023 403 ----VRALYRAVQTSI----EQESLVRVAIWCIGEYGDMLVNNVGVL--NIEDPITVTESDAVDVVEIAIKHHSSDITTK 472 (812)
Q Consensus 403 ----v~~L~~~l~~~~----~~~~l~~~~~WiiGEY~~~l~~~~~~~--~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk 472 (812)
+.+|...++... ..+ =+.+-+|+.=+-..++..+..-. .......+-+..++..+-+++..+..+..+|
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~-Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSA-QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCH-HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred HcCCHHHHHHHhCCCccccccHH-HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 334444433110 111 13344444444444444322100 0000001112345555555655555578899
Q ss_pred HHHHHHHHHHHccCCCCh--------------HHHHHHHHHhh-CCCChHHHHHHHHHHHHh-ccCHHHHHHhhhcCC
Q 045023 473 AMAMVALLKLSSRFPSCS--------------ERIRDIIVQNK-GSLVLELQQRSIEFNSIV-EKHQNIRSTLVERMP 534 (812)
Q Consensus 473 ~~iLtAl~KL~~r~p~~~--------------~~i~~ll~~~~-~s~~~evqqRA~ey~~Ll-~~~~~~~~~ll~~mP 534 (812)
...|.+++-+..-.+..+ +.+..++-... ....+++|-=|++..+-+ ..+++....+...+-
T Consensus 331 ~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ll 408 (651)
T 3grl_A 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLL 408 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcC
Confidence 999999888775443322 23444443444 456689998887766554 366666666666553
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.11 E-value=0.35 Score=48.89 Aligned_cols=212 Identities=10% Similarity=0.062 Sum_probs=114.5
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHH
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTK 330 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~ 330 (812)
.+..|..||..+|+.+++=+|..|-.+...- ...++++...|+..+++.|.-|..+|+..+-.|.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LL---------- 103 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLV---------- 103 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------
Confidence 4566667777777777777777777777653 3346666667776667666666666666555443
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPD---KIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALY 407 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~---~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~ 407 (812)
+.-+.. +.-..+++.++++....-...++...+-.+ +.-.....++.-+.
T Consensus 104 -------------------------e~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~ 156 (265)
T 3b2a_A 104 -------------------------KDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYIN 156 (265)
T ss_dssp -------------------------TTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHH
T ss_pred -------------------------cCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHH
Confidence 332221 122333444444422222333333222222 22222233334444
Q ss_pred HHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC-
Q 045023 408 RAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF- 486 (812)
Q Consensus 408 ~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~- 486 (812)
..+. . ....++.+++-.+-|-+....+..- -+++++-+..++++ +++.++.-.|.++-++..+-
T Consensus 157 sLl~-S-kd~~vK~agl~~L~eia~~S~D~~i-----------~~~I~~eI~elL~~--eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 157 ELVV-S-PDLYTKVAGFCLFLNMLNSSADSGH-----------LTLILDEIPSLLQN--DNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp HHHT-C-SSHHHHHHHHHHHHHHGGGCSSCCC-----------GGGTTTTHHHHHTC--SCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHh-C-CChhHHHHHHHHHHHhhcccCCHHH-----------HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCcc
Confidence 4442 1 2222344444444444433222111 12334445556654 47899999999999999874
Q ss_pred -CCChHHHHHHHHHhh----CCCChHHHHHHHHHHHHh
Q 045023 487 -PSCSERIRDIIVQNK----GSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 487 -p~~~~~i~~ll~~~~----~s~~~evqqRA~ey~~Ll 519 (812)
.+..+.+..++.... ---.+++|+||+--..++
T Consensus 222 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 222 LENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 345666666655533 256789999998877766
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.03 E-value=1.1 Score=54.27 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=116.9
Q ss_pred HHHHhhcC---CCCHhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCC--------cceeccC----------CCchhH
Q 045023 108 NSLKQDLN---HTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRD--------PNIRKKP----------KCLDGL 166 (812)
Q Consensus 108 Nsl~kDL~---s~n~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~--------pyVRKkA----------~~v~~l 166 (812)
..|.+-|- +.++++++=||-.||-|..-.- ++....+...+.+.+ +.||.-| ..-+.+
T Consensus 395 ~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev 473 (963)
T 4ady_A 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEV 473 (963)
T ss_dssp HHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555 6789999999999988744321 122333344444333 6788777 233566
Q ss_pred HHHHHHHhcCCCCCccccccCCChhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhc
Q 045023 167 VKTLRDVVNSPYAPEYDIAGITDPFLHIRLLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSI 246 (812)
Q Consensus 167 v~~L~~L~~~~~~pe~~~~~~~dpwlqv~lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i 246 (812)
++.|..++...-. +.+ +.-..-|-++ .++..+.+..+ .+|..+.+ + ...-|...++-.+-.+
T Consensus 474 ~e~L~~~L~dd~~----~~~----~~AalALGli-~vGTgn~~ai~---~LL~~~~e-~-----~~e~vrR~aalgLGll 535 (963)
T 4ady_A 474 YEALKEVLYNDSA----TSG----EAAALGMGLC-MLGTGKPEAIH---DMFTYSQE-T-----QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHHTCCH----HHH----HHHHHHHHHH-HTTCCCHHHHH---HHHHHHHH-C-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCH----HHH----HHHHHHHhhh-hcccCCHHHHH---HHHHHHhc-c-----CcHHHHHHHHHHHHhh
Confidence 7777776653210 000 1111111111 22444433322 23322221 1 1123333333333222
Q ss_pred C-CChhHHHHHHHHHHHh-hcCCCcchHHHHHHHHH--HHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHh--c
Q 045023 247 E-DNGGLRVLAINILGRF-LSNRDNNIRYVALNMLM--KAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLL--V 320 (812)
Q Consensus 247 ~-~~~~L~~l~i~~L~~f-L~~~d~niryvaL~~L~--~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l--~ 320 (812)
. ..++. +..+.+. ..+.++.+||-+.-.+. ..-.-++.++++-.. .|..|.+..+|+-|.--|-.+ -
T Consensus 536 ~~g~~e~----~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 536 NYGRQEL----ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp TTTCGGG----GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred hCCChHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhccC
Confidence 1 11111 1222222 23456667776654443 122234555554222 244555566666655444432 2
Q ss_pred CCCCHHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHH
Q 045023 321 NESNVKPLTKELIDYL-EISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVI 392 (812)
Q Consensus 321 n~~Nv~~Iv~eLl~yl-~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li 392 (812)
+++. +..++..+ +..|+..|.-+..+++.++-- .+ ..-.+++|.+++.....+|+...+..+-.+.
T Consensus 609 ~~e~----v~rlv~~L~~~~d~~VR~gAalALGli~aG-n~-~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 609 DYTT----VPRIVQLLSKSHNAHVRCGTAFALGIACAG-KG-LQSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp SCSS----HHHHTTTGGGCSCHHHHHHHHHHHHHHTSS-SC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred CHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhccC-CC-cHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3322 23333322 345666776666666665521 11 2346666666666666666666665555443
No 82
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=95.97 E-value=0.084 Score=54.43 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=75.7
Q ss_pred ceEEEecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecC----ceeEeeeCCCCCCcCCCCCCCccEE
Q 045023 696 SIVAFESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPK----FLQLHLDPASGNTLPASGNGSITQT 771 (812)
Q Consensus 696 ~~~~~~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK----~~kL~l~p~S~~~l~~~~~~~itQ~ 771 (812)
.-..|+++-|+|.+..+. ..+...+.++|.|+++.+|++|...+..|. .+.++..|..+ +|+|+++ +.|.
T Consensus 22 ~GVLyEd~~iQIg~kse~---~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~~~~~-~I~~~~q--~qq~ 95 (247)
T 1kyf_A 22 NGVLFENQLLQIGLKSEF---RQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDP-TVDGGAQ--VQQV 95 (247)
T ss_dssp CEEEEECSSEEEEEEEEE---ETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEECCCCS-CBCTTCE--EEEE
T ss_pred ceEEEECCCEEEEEEEEE---eCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecCCCCc-eeCCCcE--EEEE
Confidence 457899999999996554 344678999999999999999999999886 47777777544 5888764 5888
Q ss_pred EEEEeCCCCCCCeEEEEEEEEEeCCeeeeeee
Q 045023 772 LRVTNSQHGKKPLVMRTRIAYKLNNRDVLEEG 803 (812)
Q Consensus 772 ~~i~n~~~~~k~l~lr~klsY~~~g~~~~e~~ 803 (812)
+.|.....-.++. .++++|..+|.+..-..
T Consensus 96 i~v~~~~~f~~~P--~l~isf~~~g~~~~~~L 125 (247)
T 1kyf_A 96 VNIECISDFTEAP--VLNIQFRYGGTFQNVSV 125 (247)
T ss_dssp EEEEECSCCCCCC--EEEEEEEETTEEEEEEE
T ss_pred EEEEEccccCCCC--EEEEEEEECCeeeEEEE
Confidence 8887754322232 47889999998765443
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.89 E-value=0.27 Score=60.58 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccC
Q 045023 416 QESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRF 486 (812)
Q Consensus 416 ~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~ 486 (812)
+..++..++|++|.|++.+...+.+ -..++..+-..++ +.|+.+.-.|+.++....
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~----------l~~vl~~l~~~l~-----~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAY----------IPPAINLLVRGLN-----SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----C----------HHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHH
Confidence 5668889999999999887543221 1234444333332 567778888888887554
No 84
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.31 E-value=7.5 Score=47.88 Aligned_cols=208 Identities=11% Similarity=0.110 Sum_probs=106.4
Q ss_pred HHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh---cCHHHHHHHHHHHHHHHh--hhCCchh
Q 045023 289 AVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEI---SDQEFKGDLTAKICSMVE--KFSPDKI 363 (812)
Q Consensus 289 ~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~---~d~~~~~~li~~I~~la~--k~~~~~~ 363 (812)
.+......++.|..++|..|-..+++.+.. .+.- +.+... ....++.-+..-+..+.. +|+++..
T Consensus 329 ~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~---------~l~~-~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 329 QLYNLFPYLIRYLSDDYDETSTAVFPFLSD---------LLVS-LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHTTHHHHHH---------HHHH-HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHH---------HHHH-HHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 345556777888888887887777777443 2211 112221 234444444444444444 4787777
Q ss_pred HHHHHHHHHHhhcCc--------cchHHHHHHHHHHHHh-CCCcHHH-HHHHHHHHHhhc-----cchHHHHHHHHHhhh
Q 045023 364 WYIDQMLKVLSEAGN--------FVKDEVWHALIVVISN-ASDLHGY-TVRALYRAVQTS-----IEQESLVRVAIWCIG 428 (812)
Q Consensus 364 w~vd~ll~lL~~~g~--------~v~~e~i~~i~~li~~-~p~l~~~-~v~~L~~~l~~~-----~~~~~l~~~~~WiiG 428 (812)
|.- .++ ..+.++. .+.+.+.. .|++... ....+...+... ..+..-+-++++++|
T Consensus 399 ~~~---------~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~ 468 (980)
T 3ibv_A 399 WDD---------DPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETY 468 (980)
T ss_dssp CCC---------CSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred ccc---------ccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 731 110 0122222 33333321 3333221 111122222111 112233556777777
Q ss_pred hcccccccCccccccCCCCccChhhHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHccC---CCChHHHHHHHHH--h
Q 045023 429 EYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHH---SSDITTKAMAMVALLKLSSRF---PSCSERIRDIIVQ--N 500 (812)
Q Consensus 429 EY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~---~~~~~vk~~iLtAl~KL~~r~---p~~~~~i~~ll~~--~ 500 (812)
-+|+-+.+......++.+ ..+.++.++..++.+. ...+.||...+..+.+.+.-+ |+..+.+...|-. .
T Consensus 469 ~iaE~i~~~~~~~~~~~~---~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~g 545 (980)
T 3ibv_A 469 IFGEGLRGPDAFFNEVDK---SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRG 545 (980)
T ss_dssp HTTTTCCSGGGTBCSSSC---CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTT
T ss_pred HHHhhccccccccCcccc---hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhcccc
Confidence 777765542211100111 1124677777766532 235789988888888877655 5555555555544 5
Q ss_pred hCCCChHHHHHHHHHHHHh
Q 045023 501 KGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 501 ~~s~~~evqqRA~ey~~Ll 519 (812)
..+.+..||-||+....=|
T Consensus 546 l~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 546 IHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp TTCCCTTTHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHH
Confidence 5578899999998755444
No 85
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.02 E-value=9.2 Score=46.71 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhc--
Q 045023 307 SIRKRALELVYLLVNESN---VKPLTKELIDYLEI-----SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEA-- 376 (812)
Q Consensus 307 sIr~~aLell~~l~n~~N---v~~Iv~eLl~yl~~-----~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~-- 376 (812)
..|+.+-+++..++..-- +..+++-+..++.. .+-..+.-++..++.+++.......-+++.++.++..-
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 466667777766654322 33333333334433 34457788899999999877654445666666655221
Q ss_pred ---CccchHHHHH---HHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccC
Q 045023 377 ---GNFVKDEVWH---ALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVT 450 (812)
Q Consensus 377 ---g~~v~~e~i~---~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~ 450 (812)
...+...++. ++...+..+++....++..++..+. ..+...++|.+..+++..... +. | -
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~-----~~v~~~A~~al~~l~~~~~~~--l~----p---~ 581 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN-----SSMSAQATLGLKELCRDCQLQ--LK----P---Y 581 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH-----SSCHHHHHHHHHHHHHHCHHH--HH----H---H
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHHh--cc----c---c
Confidence 2234444333 3333444556666667777777762 345677788888776432110 00 0 0
Q ss_pred hhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCC-CC-h-------HHHHHHHHHhhCCC--ChHHHHHHHHHHHHh
Q 045023 451 ESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFP-SC-S-------ERIRDIIVQNKGSL--VLELQQRSIEFNSIV 519 (812)
Q Consensus 451 ~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p-~~-~-------~~i~~ll~~~~~s~--~~evqqRA~ey~~Ll 519 (812)
-+.+++.+..++.....+...+.+++.|++-++...| +. . +.+.+.++...... +.+-+....++...+
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 1234455555565443467999999999999998765 21 1 22223333333322 555666777777777
Q ss_pred c
Q 045023 520 E 520 (812)
Q Consensus 520 ~ 520 (812)
.
T Consensus 662 ~ 662 (971)
T 2x1g_F 662 S 662 (971)
T ss_dssp H
T ss_pred H
Confidence 4
No 86
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.86 E-value=8.7 Score=46.67 Aligned_cols=231 Identities=11% Similarity=0.113 Sum_probs=138.0
Q ss_pred HHHHHHHhhcCCC--------cchHHHHHHHHHHHH--hhCHHHHHHhHhhhcccccccCHhHHHH-HHHHHHHhcCCCC
Q 045023 256 AINILGRFLSNRD--------NNIRYVALNMLMKAI--TVDAQAVQRHRATILECVKDLDASIRKR-ALELVYLLVNESN 324 (812)
Q Consensus 256 ~i~~L~~fL~~~d--------~niryvaL~~L~~l~--~~~p~~v~~h~~~i~~cL~d~D~sIr~~-aLell~~l~n~~N 324 (812)
+...|..+|.+.+ ..+|.-|.-.|-.+. ..+++++. .+..+|.|++..++.. ++-|=...+-..|
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e----~L~~~L~dd~~~~~~~AalALGli~vGTgn 505 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYE----ALKEVLYNDSATSGEAAALGMGLCMLGTGK 505 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHH----HHHHHHHTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHhcCCHHHHHHHHHHHhhhhcccCC
Confidence 4566666665544 457766666666543 23455543 3445666666555432 2222222234444
Q ss_pred HHHHHHHHHHHhhh-cCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCc-cchHHHHHHHHHHHHhCCCcHHHH
Q 045023 325 VKPLTKELIDYLEI-SDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGN-FVKDEVWHALIVVISNASDLHGYT 402 (812)
Q Consensus 325 v~~Iv~eLl~yl~~-~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~-~v~~e~i~~i~~li~~~p~l~~~~ 402 (812)
..++++|+.++.. .+..+++.++..|+.+.-. ..-.++.+++.|....+ +++...+..+----...-+ ..+
T Consensus 506 -~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~a 578 (963)
T 4ady_A 506 -PEAIHDMFTYSQETQHGNITRGLAVGLALINYG----RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSA 578 (963)
T ss_dssp -HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT----CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHH
T ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHH
Confidence 3566778887754 4677888888888876421 22356667777765433 3333332211100011112 346
Q ss_pred HHHHHHHHhhccchHHHHHHHHHhhhh--cccccccCccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 045023 403 VRALYRAVQTSIEQESLVRVAIWCIGE--YGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALL 480 (812)
Q Consensus 403 v~~L~~~l~~~~~~~~l~~~~~WiiGE--Y~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~ 480 (812)
|++|+..+.++. .+.+++.++.-+|. +++. +-+.+++..+.+ +.++.+|..+-.|+.
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~------------------e~v~rlv~~L~~--~~d~~VR~gAalALG 637 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY------------------TTVPRIVQLLSK--SHNAHVRCGTAFALG 637 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC------------------SSHHHHTTTGGG--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH------------------HHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 777777776443 33467888888886 3331 112233332222 346899999999999
Q ss_pred HHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 481 KLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 481 KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
-++.-.|. ..+..+|....+|.|.+||+-|.+-+.++.
T Consensus 638 li~aGn~~--~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 638 IACAGKGL--QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTSSSCC--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HhccCCCc--HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 88876664 677789999999999999999999998886
No 87
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.65 E-value=2.6 Score=47.07 Aligned_cols=334 Identities=14% Similarity=0.182 Sum_probs=169.8
Q ss_pred HhHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcceeccCCCchhHHHHHHHHhcCCCC--CccccccCCChhH-HHH
Q 045023 119 QYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKPKCLDGLVKTLRDVVNSPYA--PEYDIAGITDPFL-HIR 195 (812)
Q Consensus 119 ~~i~~lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~~pyVRKkA~~v~~lv~~L~~L~~~~~~--pe~~~~~~~dpwl-qv~ 195 (812)
.++++ -++.|+.+...++++.+..-|-.++.+ +||-...+ +.+.+ .... +-|...-..|+|. +..
T Consensus 77 ~~~~~-~l~lL~~~~~~d~vqYvL~Li~DlL~~-~~~~~~~~-------~~f~~---~~~~~~~l~~~~~~~dd~~~ll~ 144 (480)
T 1ho8_A 77 KTLIP-LIHLLSTSDNEDCKKSVQNLIAELLSS-DKYGDDTV-------KFFQE---DPKQLEQLFDVSLKGDFQTVLIS 144 (480)
T ss_dssp TTHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHC-SSSSHHHH-------HHHHH---CTTHHHHHHHHCSCSSHHHHHHH
T ss_pred hHHHH-HHHHHhhcChHHHHHHHHHHHHHHHhc-CcchHHHH-------HHHhh---CcccchHHHHHHhcccchHHHHH
Confidence 34444 788899999999999999999999987 45543222 21111 0000 0121111234444 444
Q ss_pred HHHHHHhcC---CCCchhhhHHHH---HHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHH-----------HHHH
Q 045023 196 LLKLLHVLG---QGDADASDCMND---ILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRV-----------LAIN 258 (812)
Q Consensus 196 lL~lL~~l~---~~~~~~~~~l~d---iL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~-----------l~i~ 258 (812)
-..++..+. ..+.+..+.+.+ ++.++ ++. .+....+-|++++-.+-..++.|. ..+.
T Consensus 145 a~~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L-~~~-----~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~ 218 (480)
T 1ho8_A 145 GFNVVSLLVQNGLHNVKLVEKLLKNNNLINIL-QNI-----EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFK 218 (480)
T ss_dssp HHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHH-HCT-----TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHhHHHHHhhhHHHHHHh-ccc-----cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHH
Confidence 444444433 222222233322 44433 221 111223444544433322222222 2223
Q ss_pred HHHHhhcCC-------------CcchHHHHHHHHHHHHhhCHHHHHHhH-------hhhccccccc-CHhHHHHHHHHHH
Q 045023 259 ILGRFLSNR-------------DNNIRYVALNMLMKAITVDAQAVQRHR-------ATILECVKDL-DASIRKRALELVY 317 (812)
Q Consensus 259 ~L~~fL~~~-------------d~niryvaL~~L~~l~~~~p~~v~~h~-------~~i~~cL~d~-D~sIr~~aLell~ 317 (812)
++.+.+.+. ...+.|-++-++-.+ ..+++++.... ..++..+++. -.-|-|-++-++.
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~ 297 (480)
T 1ho8_A 219 ILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIIL 297 (480)
T ss_dssp HHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 333333211 123477777766544 44454433211 1222334432 2567777888888
Q ss_pred HhcCCC--CHHHHHHH------HHHHhh------hcCHHHHHHHHHHHHHHHhhhCC--chhHHHHHH-HHHHhhcCccc
Q 045023 318 LLVNES--NVKPLTKE------LIDYLE------ISDQEFKGDLTAKICSMVEKFSP--DKIWYIDQM-LKVLSEAGNFV 380 (812)
Q Consensus 318 ~l~n~~--Nv~~Iv~e------Ll~yl~------~~d~~~~~~li~~I~~la~k~~~--~~~w~vd~l-l~lL~~~g~~v 380 (812)
.+++.. +-...+.+ ++..+. ..|+|+..++-.--..+.+.+.. .++-|..-+ -..|.=+.-|-
T Consensus 298 Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~ 377 (480)
T 1ho8_A 298 QCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHV 377 (480)
T ss_dssp HTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGG
T ss_pred HHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCcc
Confidence 888876 22233332 223332 26888887776665555554432 233333332 22233344577
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhc--------cchHHHHHHHHHhhhhcccccccCccccccCCCCccChh
Q 045023 381 KDEVWHALIVVISNASDLHGYTVRALYRAVQTS--------IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTES 452 (812)
Q Consensus 381 ~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~--------~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~ 452 (812)
++..|..=.. +..+-.-.++++|.+.|... ......+++++.=||||..+.+.+..+.+ .-
T Consensus 378 se~FW~ENa~---kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~--------~l 446 (480)
T 1ho8_A 378 DNGFWSDNID---EFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD--------KT 446 (480)
T ss_dssp CHHHHHHHSG---GGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH--------HH
T ss_pred chhHHHHHHH---HHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHH--------Hc
Confidence 8888854332 22333345788888888742 22345789999999999988765432211 11
Q ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
Q 045023 453 DAVDVVEIAIKHHSSDITTKAMAMVALLKLSS 484 (812)
Q Consensus 453 ~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~ 484 (812)
..-+.+..++. .++++||-..|.|+-|+-.
T Consensus 447 g~K~~VM~Lm~--h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 447 GGKADIMELLN--HSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp SHHHHHHHHTS--CSSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 11122333443 2579999999999998754
No 88
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.60 E-value=0.042 Score=50.38 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 045023 257 INILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYL 336 (812)
Q Consensus 257 i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl 336 (812)
+..|..+|.+.++.+|+.++..|..+. ++.+ ...+..+|+|+|..+|..|...|-.+.+ ...++.|...+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~~a----~~~L~~~L~d~~~~VR~~A~~aL~~~~~----~~a~~~L~~~l 113 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ--DERA----VEPLIKLLEDDSGFVRSGAARSLEQIGG----ERVRAAMEKLA 113 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC--SHHH----HHHHHHHHHHCCTHHHHHHHHHHHHHCS----HHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC--CHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHH
Confidence 466778888889999999999887764 3343 3445667889999999999999998875 35667777777
Q ss_pred hhcCHHHHHHHHHHHHH
Q 045023 337 EISDQEFKGDLTAKICS 353 (812)
Q Consensus 337 ~~~d~~~~~~li~~I~~ 353 (812)
.+.|..+|..++.+++.
T Consensus 114 ~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 114 ETGTGFARKVAVNYLET 130 (131)
T ss_dssp TSCCTHHHHHHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHh
Confidence 77788888888777653
No 89
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.53 Score=55.89 Aligned_cols=201 Identities=12% Similarity=0.129 Sum_probs=120.1
Q ss_pred CcchHHHHHHHHHHhcCCChhHHH-----HHHHHHHHhhcCCCcc---hHHHHHHHHHHHH-hhCHHHHH-Hh-----Hh
Q 045023 231 AGNAILYECVETIMSIEDNGGLRV-----LAINILGRFLSNRDNN---IRYVALNMLMKAI-TVDAQAVQ-RH-----RA 295 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~-----l~i~~L~~fL~~~d~n---iryvaL~~L~~l~-~~~p~~v~-~h-----~~ 295 (812)
.+..+.-.+++++..+..++..|. -++..|..+|.+...+ .|..|...|.++. ..+|..+- .+ ..
T Consensus 469 ~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~ 548 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIP 548 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchH
Confidence 356677788888888876655332 3467777787765443 7899999999987 44565532 11 12
Q ss_pred hhcccccc-cCHh------------H-HHHHHHHHHHhcCCC-C-----HHHHH------HHHHHHhhhcCHHHHHHHHH
Q 045023 296 TILECVKD-LDAS------------I-RKRALELVYLLVNES-N-----VKPLT------KELIDYLEISDQEFKGDLTA 349 (812)
Q Consensus 296 ~i~~cL~d-~D~s------------I-r~~aLell~~l~n~~-N-----v~~Iv------~eLl~yl~~~d~~~~~~li~ 349 (812)
.++..|.. ++.. + +..||--|+.|+.-. | -+.|+ +.|.+++...+..+++.++.
T Consensus 549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~e 628 (778)
T 3opb_A 549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628 (778)
T ss_dssp HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHH
Confidence 34455552 2211 2 667888888887654 2 23344 45666666677889999999
Q ss_pred HHHHHHh-------hhCCc----hhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhh
Q 045023 350 KICSMVE-------KFSPD----KIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL------HGYTVRALYRAVQT 412 (812)
Q Consensus 350 ~I~~la~-------k~~~~----~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l------~~~~v~~L~~~l~~ 412 (812)
.|+.++. +|... ..-.++.++.++......+...+.-.+..+-..+|.. +...+..+...+.+
T Consensus 629 lI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 9998873 22211 0124888999887655555555554555444445432 12456667777765
Q ss_pred ccchHHH---HHHHHHhhhhcc
Q 045023 413 SIEQESL---VRVAIWCIGEYG 431 (812)
Q Consensus 413 ~~~~~~l---~~~~~WiiGEY~ 431 (812)
....+.+ ..++++.+-||+
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 2233333 345666677776
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.19 E-value=0.65 Score=52.22 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHhcCCCCchhhhHH---HHHHHHHhhccccCCCCcchHHHHHHHHHHhcCC--ChhHHH-----HHHHH
Q 045023 190 PFLHIRLLKLLHVLGQGDADASDCM---NDILAQVATKTESNKNAGNAILYECVETIMSIED--NGGLRV-----LAINI 259 (812)
Q Consensus 190 pwlqv~lL~lL~~l~~~~~~~~~~l---~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~--~~~L~~-----l~i~~ 259 (812)
|-+|......|+.++..++.....+ ...+..+..-. +..+..|...++.++..+.. +..-+. -++..
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL---~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL---KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG---GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 4457777777887777664332222 12233222221 12345677777777777654 222222 24567
Q ss_pred HHHhh-cCCCcchHHHHHHHHHHHHhhCH----HHHH--HhHhhhcccccccCH----hHHHHHHHHHHHhc-----CCC
Q 045023 260 LGRFL-SNRDNNIRYVALNMLMKAITVDA----QAVQ--RHRATILECVKDLDA----SIRKRALELVYLLV-----NES 323 (812)
Q Consensus 260 L~~fL-~~~d~niryvaL~~L~~l~~~~p----~~v~--~h~~~i~~cL~d~D~----sIr~~aLell~~l~-----n~~ 323 (812)
|.++| .+.+..++--++..|..++.... .++. .-...++.+|.+.+. .++..|.-.|..|+ +++
T Consensus 291 LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 370 (458)
T 3nmz_A 291 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 370 (458)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH
Confidence 77764 44677788888888877776331 2221 123344555664443 47888887777776 555
Q ss_pred CHHHH-----HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCch-----hHHHHHHHHHHhhcCccchHHHHHHHHHHHH
Q 045023 324 NVKPL-----TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDK-----IWYIDQMLKVLSEAGNFVKDEVWHALIVVIS 393 (812)
Q Consensus 324 Nv~~I-----v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~-----~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~ 393 (812)
|...+ +.-|...|...+.+.+++++..|+.++....... .-.+..|+++|......+...+...+..+..
T Consensus 371 ~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 55554 3556777777777888888888888774211111 1133445555444433444555555555555
Q ss_pred hCCC
Q 045023 394 NASD 397 (812)
Q Consensus 394 ~~p~ 397 (812)
++|.
T Consensus 451 ~~p~ 454 (458)
T 3nmz_A 451 NRPA 454 (458)
T ss_dssp CCSC
T ss_pred CCHh
Confidence 5444
No 91
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.13 E-value=1.7 Score=48.50 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=95.4
Q ss_pred ChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHH
Q 045023 249 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPL 328 (812)
Q Consensus 249 ~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~I 328 (812)
+...++++.+.|.+|..+ =|+.+=-|++ ..+++..|+|..||+.|+.=|..+|..+++..|
T Consensus 41 ~~k~K~LaaQ~I~kffk~-FP~l~~~Ai~------------------a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~ki 101 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKH-FPELADSAIN------------------AQLDLCEDEDVSIRRQAIKELPQFATGENLPRV 101 (507)
T ss_dssp CHHHHHHHHHHHHHHGGG-CGGGHHHHHH------------------HHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHhh-ChhhHHHHHH------------------HHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhH
Confidence 455667777777777643 3444444444 445677899999999999999999999999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhC------CCcHHHH
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNA------SDLHGYT 402 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~------p~l~~~~ 402 (812)
++-|...|...|..-...+-.++..+-.. +..-.+..++.-+..+.+.+++.++.-|..-+..- .+...++
T Consensus 102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 99999999977765555555555444433 44456666666666655555555554444444331 2345566
Q ss_pred HHHHHHHHhhccchHH
Q 045023 403 VRALYRAVQTSIEQES 418 (812)
Q Consensus 403 v~~L~~~l~~~~~~~~ 418 (812)
+..+-+.|+ +...+.
T Consensus 179 ~~~ikK~L~-DVT~~E 193 (507)
T 3u0r_A 179 LTESKKVLE-DVTGEE 193 (507)
T ss_dssp HHHHHHHTT-SCCHHH
T ss_pred HHHHHHHhc-cccHHH
Confidence 666656664 444444
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.93 E-value=9 Score=47.43 Aligned_cols=46 Identities=2% Similarity=-0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 474 MAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 474 ~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
+++....++....|+....+...+-.+-.+.++.||.+|+.-..=|
T Consensus 522 ~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l 567 (1049)
T 3m1i_C 522 YVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1049)
T ss_dssp HHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444444444343443344444333455677899999999755444
No 93
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.58 E-value=0.59 Score=48.51 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=108.1
Q ss_pred cCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhccc----ccccCHhHHHHHHHHHHHhcC----------CCCHHHHHH
Q 045023 265 SNRDNNIRYVALNMLMKAITVDAQAVQRHRATILEC----VKDLDASIRKRALELVYLLVN----------ESNVKPLTK 330 (812)
Q Consensus 265 ~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~c----L~d~D~sIr~~aLell~~l~n----------~~Nv~~Iv~ 330 (812)
-++|..-+.-|++.|...+..++..+....+.++.- +.|.+..+-.++|++|-.+.+ +.-+..+++
T Consensus 56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP 135 (266)
T 2of3_A 56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP 135 (266)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 356777788888888888888887766665554441 238899999999999987742 112456667
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHHHH---HHHH
Q 045023 331 ELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTV---RALY 407 (812)
Q Consensus 331 eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~~v---~~L~ 407 (812)
-|++=+-+..+.+|..+-..+..++.-|+|.. .++.+++-++........|++..+..++..+---...++ ..++
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~--v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia 213 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLK--MTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVA 213 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHH
Confidence 77666666777888777777767776676663 667777777777778899999999998876432222344 4455
Q ss_pred HHHhhccchHHHHHHHHHhhhhc
Q 045023 408 RAVQTSIEQESLVRVAIWCIGEY 430 (812)
Q Consensus 408 ~~l~~~~~~~~l~~~~~WiiGEY 430 (812)
..+.+ ....++.+++-|+.|-
T Consensus 214 ~ll~D--~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 214 PFVGD--KDVNVRNAAINVLVAC 234 (266)
T ss_dssp GGGGC--SSHHHHHHHHHHHHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHHH
Confidence 55543 2233455555555543
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.01 E-value=17 Score=44.14 Aligned_cols=274 Identities=12% Similarity=0.029 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHhcC----CChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcc----cccc-
Q 045023 233 NAILYECVETIMSIE----DNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILE----CVKD- 303 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~----~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~----cL~d- 303 (812)
..|...++.++-.+. .++......++.|...|. ++.++-.|...|.+++...+..+.+|...|+. ++..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~--~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~ 580 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG--NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ 580 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTT--CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 345555555554432 122333334555555553 37788888888888876544444445444433 3332
Q ss_pred -cCHhHHHHHHHHHHHhcCC---CCHHHHHHHHHHHh----hh-----cCHHHHHH---HHHHHHHHHhhhCC-------
Q 045023 304 -LDASIRKRALELVYLLVNE---SNVKPLTKELIDYL----EI-----SDQEFKGD---LTAKICSMVEKFSP------- 360 (812)
Q Consensus 304 -~D~sIr~~aLell~~l~n~---~Nv~~Iv~eLl~yl----~~-----~d~~~~~~---li~~I~~la~k~~~------- 360 (812)
-+...|...++-+..++.. ++....++.++..+ .. .+++.+.. ++..|+.++.-+..
T Consensus 581 ~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~ 660 (963)
T 2x19_B 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDH 660 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 3456777777777777653 33444444444333 21 24555553 33334444433321
Q ss_pred -------------------chhHHHHHHHHHHhhcC--ccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhc---cch
Q 045023 361 -------------------DKIWYIDQMLKVLSEAG--NFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTS---IEQ 416 (812)
Q Consensus 361 -------------------~~~w~vd~ll~lL~~~g--~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~---~~~ 416 (812)
-.+-++..+.+++..-. .++.+.+...+..++...++-....+..++..+... ...
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 740 (963)
T 2x19_B 661 EGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ 740 (963)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC
T ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc
Confidence 11123333444443322 234444444444444433321111122333322211 112
Q ss_pred HHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHH-HH---HHHhc-cCCCHHHHHHHHHHHHHHHccCCC---
Q 045023 417 ESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDV-VE---IAIKH-HSSDITTKAMAMVALLKLSSRFPS--- 488 (812)
Q Consensus 417 ~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~-l~---~~l~~-~~~~~~vk~~iLtAl~KL~~r~p~--- 488 (812)
..+...+.-++++|+..- .+.+ .+ ..+++. +. .++.. ....++++......+..+...+|.
T Consensus 741 ~~~l~l~~~li~~f~~~~----~~~~-----~~--~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~ 809 (963)
T 2x19_B 741 ASALDLTRQLVHIFAHEP----AHFP-----PI--EALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL 809 (963)
T ss_dssp HHHHHHHHHHHHHHTTCT----TTCH-----HH--HHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred cHHHHHHHHHHHHhCCCc----chHH-----HH--HHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc
Confidence 345555666666665420 0000 00 011111 11 12222 223578888888777777766543
Q ss_pred ---C-hHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 045023 489 ---C-SERIRDIIVQNKGSLVLELQQRSIEFNSIV 519 (812)
Q Consensus 489 ---~-~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll 519 (812)
. .+.+.+.+....++.+.++..-|+.++.-+
T Consensus 810 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 810 CERLDVKAVFQCAVLALKFPEAPTVKASCGFFTEL 844 (963)
T ss_dssp CTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 2 455555555555689999999888877654
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.28 E-value=2 Score=44.32 Aligned_cols=102 Identities=8% Similarity=0.156 Sum_probs=71.2
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHhhC------HHHH----HHhHhhhc-ccccccCHhHHHHHHHHHHHhcCC-CCHH
Q 045023 259 ILGRFLSNRDNNIRYVALNMLMKAITVD------AQAV----QRHRATIL-ECVKDLDASIRKRALELVYLLVNE-SNVK 326 (812)
Q Consensus 259 ~L~~fL~~~d~niryvaL~~L~~l~~~~------p~~v----~~h~~~i~-~cL~d~D~sIr~~aLell~~l~n~-~Nv~ 326 (812)
.+.+++.+++..+...+|+++..++... .... ......++ .||.|....+|..+++.+..++.. ....
T Consensus 59 ~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~ 138 (278)
T 4ffb_C 59 LFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT 138 (278)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH
Confidence 3445555455555666777777776532 1112 22222233 478899999999999999888754 3457
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCC
Q 045023 327 PLTKELIDYLEISDQEFKGDLTAKICSMVEKFSP 360 (812)
Q Consensus 327 ~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~ 360 (812)
.+++.++.++..-++..+.+++.-|..+...|..
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 7788888899888999999999999998888753
No 96
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.08 E-value=15 Score=37.63 Aligned_cols=142 Identities=10% Similarity=0.117 Sum_probs=94.8
Q ss_pred hhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh--cCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH
Q 045023 210 ASDCMNDILAQVATKTESNKNAGNAILYECVETIMS--IEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA 287 (812)
Q Consensus 210 ~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~--i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p 287 (812)
..+.+.++|++-.. ++.+.-.+..+-+.. +..++.+....+..+..|..+.+.++|-.+..-|......++
T Consensus 13 ~~~~v~~lln~A~~-------~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~ 85 (257)
T 3gs3_A 13 ARAKVVDWCNELVI-------ASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV 85 (257)
T ss_dssp HHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhh-------cCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566666665432 222333444333333 234667777777777788778888999999999999999999
Q ss_pred HHHHHhHhhhcccccccCHhHHHHHHHHHH--------HhcCCCCH----H-------HHHHHHHHHhhhcCHHHHHHHH
Q 045023 288 QAVQRHRATILECVKDLDASIRKRALELVY--------LLVNESNV----K-------PLTKELIDYLEISDQEFKGDLT 348 (812)
Q Consensus 288 ~~v~~h~~~i~~cL~d~D~sIr~~aLell~--------~l~n~~Nv----~-------~Iv~eLl~yl~~~d~~~~~~li 348 (812)
+.+.++...+...|+|+|+.+-|+++.... .+|+..|. + .+-..++......+...|-.++
T Consensus 86 ~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~i 165 (257)
T 3gs3_A 86 ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAI 165 (257)
T ss_dssp GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence 988888888888999999999999886432 34666552 2 1223334444456777887777
Q ss_pred HHHHHHHhhh
Q 045023 349 AKICSMVEKF 358 (812)
Q Consensus 349 ~~I~~la~k~ 358 (812)
+-+-.++.-+
T Consensus 166 KF~e~vIl~q 175 (257)
T 3gs3_A 166 KFLEGVVVLQ 175 (257)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 7777666433
No 97
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.69 E-value=12 Score=40.68 Aligned_cols=144 Identities=14% Similarity=0.205 Sum_probs=89.8
Q ss_pred hhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHh--cCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 045023 209 DASDCMNDILAQVATKTESNKNAGNAILYECVETIMS--IEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD 286 (812)
Q Consensus 209 ~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~--i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~ 286 (812)
...+.+.++|++-... +.+.-.+..+-+-+ +..++++...+..-+..|-.+.+..+|..+..-|......+
T Consensus 22 ~~~~~v~~lln~A~~~-------~~~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~ 94 (386)
T 3o2t_A 22 TTSERVVDLLNQAALI-------TNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD 94 (386)
T ss_dssp CHHHHHHHHHHHHHHC-------CSTHHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhhcc-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 3556777777654431 12334444443333 23456666666677777777778888888888888888888
Q ss_pred HHHHHHhHhhhcccccccCHhHHHHHHHHHHH--------hcCCCCH--------H---HHHHHHHHHhhhcCHHHHHHH
Q 045023 287 AQAVQRHRATILECVKDLDASIRKRALELVYL--------LVNESNV--------K---PLTKELIDYLEISDQEFKGDL 347 (812)
Q Consensus 287 p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~--------l~n~~Nv--------~---~Iv~eLl~yl~~~d~~~~~~l 347 (812)
++.+-.....+..+|+|.|+.+-++++..... +|+..|. . .+-..++..+...+...|-.+
T Consensus 95 ~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 95 IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 77777777777777888898888887764332 2444442 1 122334444445567778777
Q ss_pred HHHHHHHHhhhC
Q 045023 348 TAKICSMVEKFS 359 (812)
Q Consensus 348 i~~I~~la~k~~ 359 (812)
++-+-.++.-++
T Consensus 175 iKFle~VIl~qS 186 (386)
T 3o2t_A 175 IKFVEGLIVTLS 186 (386)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhC
Confidence 777777665554
No 98
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.47 E-value=44 Score=41.96 Aligned_cols=83 Identities=7% Similarity=0.120 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHhh-ccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccC--------
Q 045023 396 SDLHGYTVRALYRAVQT-SIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHS-------- 466 (812)
Q Consensus 396 p~l~~~~v~~L~~~l~~-~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~-------- 466 (812)
+++-......|+..+.. +.....++...+-|+|.|+..+...+.+. ..+++.+-..+....
T Consensus 524 ~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L----------~~vL~~ll~~l~~~~~~~~~~~~ 593 (1204)
T 3a6p_A 524 EEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFL----------PQVFSKLFSSVTFETVEESKAPR 593 (1204)
T ss_dssp TCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGH----------HHHHHHHHHHHHCCTTCSTTSCC
T ss_pred ccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHH----------HHHHHHHHHhhccCCcccccccc
Confidence 44433345566666543 23344577888999999988765433211 123332222222110
Q ss_pred --CCHHHHHHHHHHHHHHHccCCC
Q 045023 467 --SDITTKAMAMVALLKLSSRFPS 488 (812)
Q Consensus 467 --~~~~vk~~iLtAl~KL~~r~p~ 488 (812)
....+|..+-+++.+|....|+
T Consensus 594 ~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 594 TRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1247899999999999988743
No 99
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.25 E-value=11 Score=41.18 Aligned_cols=236 Identities=11% Similarity=0.153 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHH-HhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhc--CCCCHHHHH
Q 045023 253 RVLAINILGRFLSNRDNNIRYVALNMLMKA-ITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLV--NESNVKPLT 329 (812)
Q Consensus 253 ~~l~i~~L~~fL~~~d~niryvaL~~L~~l-~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~--n~~Nv~~Iv 329 (812)
+..++..|-..-...+ ..|.-.|+.+..+ ...+|.++..+...|+.+-.|.+..+|+...+.+...| ..+.+..++
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l 102 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLI 102 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544323333 5788999999986 45789999888999999888999999999999987665 555677788
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCc--cchHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGN--FVKDEVWHALIVVISNASDLHGYTVRALY 407 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~--~v~~e~i~~i~~li~~~p~l~~~~v~~L~ 407 (812)
.-|..+++..|+.+.+.+|...+. -|+-.++|.+ ..++ ...+++|..+..+-. .++.
T Consensus 103 ~~L~~LL~d~d~~V~K~~I~~~ts---lYpl~f~~i~--------~~~~~~~~~e~~W~~m~~lK~-------~Il~--- 161 (386)
T 3o2t_A 103 ANLNMLLRDENVNVVKKAILTMTQ---LYKVALQWMV--------KSRVISELQEACWDMVSAMAG-------DIIL--- 161 (386)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHH---HHHHHHHHHH--------HC-CCCHHHHHHHHHHHHHHH-------HHHH---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH---HHHHHHHHHh--------cCCCcchhHHHHHHHHHHHHH-------HHHH---
Confidence 888888887777777666665544 3544445532 2222 123678887766522 1111
Q ss_pred HHHhhccchHHHHHHHH-----Hhh---hhcccc-cc--cCccc----cccCCCCccC----hh---hHHHHHHHHHhcc
Q 045023 408 RAVQTSIEQESLVRVAI-----WCI---GEYGDM-LV--NNVGV----LNIEDPITVT----ES---DAVDVVEIAIKHH 465 (812)
Q Consensus 408 ~~l~~~~~~~~l~~~~~-----Wii---GEY~~~-l~--~~~~~----~~~~~~~~v~----~~---~vi~~l~~~l~~~ 465 (812)
.+. ..+.+++..++ +++ ..+.+. .. .+..+ .+...|. ++ ++ .+++.|-.++...
T Consensus 162 -~~d--s~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~-L~~~~Le~EA~~lLd~LL~~l~~~ 237 (386)
T 3o2t_A 162 -LLD--SDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY-IQYNVLWEEGKAALEQLLKFMVHP 237 (386)
T ss_dssp -GGG--CSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS-SCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred -Hhc--cCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc-CCHHHHHHHHHHHHHHHHHHHccc
Confidence 111 01111111111 011 001100 00 00000 0111111 11 12 3444444444433
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCC---ChHHHHHHHH
Q 045023 466 SSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSL---VLELQQRSIE 514 (812)
Q Consensus 466 ~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~---~~evqqRA~e 514 (812)
..++..-..+|++++-++-+.|....+|...|..+..+. -..+|-|+++
T Consensus 238 ~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~ 289 (386)
T 3o2t_A 238 AISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVR 289 (386)
T ss_dssp -CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC----CGGGHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 345556677899999999999998888888777654211 1235666665
No 100
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=88.75 E-value=59 Score=40.93 Aligned_cols=276 Identities=11% Similarity=0.147 Sum_probs=154.2
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHH
Q 045023 233 NAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRA 312 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~a 312 (812)
..+--|.|..+-.|-.++.- ..++..|..+|.. ++.+.-..|++|..+ .-+++....-+..++.+|.+-+...==-.
T Consensus 171 ~~lQ~diI~sLPeIl~ds~H-~~v~~~L~~lL~~-~~~L~~~iLdaLs~L-~Ls~~~l~~vr~~vl~~L~s~~~e~LP~l 247 (1323)
T 3s4w_B 171 VNLQHDFITSLPEILGDSQH-ANVGKELGELLVQ-NTSLTVPILDVFSSL-RLDPNFLSKIRQLVMGKLSSVRLEDFPVI 247 (1323)
T ss_dssp TTTHHHHHHTHHHHSCGGGH-HHHHHHHHHHHHH-CSTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHSTTSSCTTHHHHH
T ss_pred HHHHHHHHHHhHHHhcchhh-HHHHHHHHHHHhc-CcchHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhccCChhhhHHH
Confidence 35677888777776544332 2456777777754 778888889988876 45677777777888888886655555556
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhcC-----------HHH---------------HHHH---HHHHHHHHhhhCCchh
Q 045023 313 LELVYLLVNESNVKPLTKELIDYLEISD-----------QEF---------------KGDL---TAKICSMVEKFSPDKI 363 (812)
Q Consensus 313 Lell~~l~n~~Nv~~Iv~eLl~yl~~~d-----------~~~---------------~~~l---i~~I~~la~k~~~~~~ 363 (812)
+..|+.-++.+|+.++|.+|-+-+.... ..+ .... +.....-+.+|.+.
T Consensus 248 IkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~-- 325 (1323)
T 3s4w_B 248 VKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKT-- 325 (1323)
T ss_dssp HHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChH--
Confidence 7788888999999999999998775311 001 1111 12222223344332
Q ss_pred HHHHHHHHHHhh---cCccchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhhccchHHHHHHH----HHhhhhccccccc
Q 045023 364 WYIDQMLKVLSE---AGNFVKDEVWHALIVVISNASDLHGYTVRALYRAVQTSIEQESLVRVA----IWCIGEYGDMLVN 436 (812)
Q Consensus 364 w~vd~ll~lL~~---~g~~v~~e~i~~i~~li~~~p~l~~~~v~~L~~~l~~~~~~~~l~~~~----~WiiGEY~~~l~~ 436 (812)
.-+..++.+.. .++|-.-++| .++-+...+...+.++-.-+-+.+....-.+.++..+ .+++..|..
T Consensus 326 -i~eAwlK~I~~~~~~~~hk~~Dl~-vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~---- 399 (1323)
T 3s4w_B 326 -ISEAWFKAIERIESAAEHKSLDVV-MLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICP---- 399 (1323)
T ss_dssp -HHHHHHHHHHHGGGSTTCCTHHHH-HHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHH----
T ss_pred -HHHHHHHHHhCCCcccccchhHHH-HHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHH----
Confidence 22233333332 2455556666 3443444433344444333334444333333333322 234444433
Q ss_pred CccccccCCCCccChhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHccCCC-C-hHHHHHHHHHhhCCCChHHHH----
Q 045023 437 NVGVLNIEDPITVTESDAVDVVEIAIKHHSSDITTKAMAMVALLKLSSRFPS-C-SERIRDIIVQNKGSLVLELQQ---- 510 (812)
Q Consensus 437 ~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~~~~vk~~iLtAl~KL~~r~p~-~-~~~i~~ll~~~~~s~~~evqq---- 510 (812)
.++++.+.++.+ ..+.++...-....-+|..|.+ + ++.|..++....+....||--
T Consensus 400 ----------------siL~La~~Ll~S--~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdv 461 (1323)
T 3s4w_B 400 ----------------SILLLAQTLFHS--QDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDV 461 (1323)
T ss_dssp ----------------HHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHH
Confidence 345555666653 3578888888888888877743 2 344556666544455555544
Q ss_pred ---HHHHHHHHhccCHHHHHHhhhcCCCCc
Q 045023 511 ---RSIEFNSIVEKHQNIRSTLVERMPVLD 537 (812)
Q Consensus 511 ---RA~ey~~Ll~~~~~~~~~ll~~mP~~~ 537 (812)
.+..+...+..+..+.+++|+.+.-+.
T Consensus 462 L~~L~~~~~~~l~~~a~~l~giLD~l~~l~ 491 (1323)
T 3s4w_B 462 LLELIVLNASAMRLNAAFVKGILDYLENMS 491 (1323)
T ss_dssp HHHHHHHCHHHHHHTHHHHHGGGGGGGGCC
T ss_pred HHHHHhcCHHHHhHHHHHHHHHHHhhcCCC
Confidence 222333333333445567777766554
No 101
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.97 E-value=24 Score=43.62 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhccccccc-----
Q 045023 235 ILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVKDL----- 304 (812)
Q Consensus 235 Vl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~----- 304 (812)
..-+|-..+-.+...++....+..+|.. +.+.++||.|+.+|...+..+ ++.-..-+..++.++.+.
T Consensus 32 ~r~~Ae~~L~~~~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~ 108 (1049)
T 3m1i_C 32 QQKQAQEILTKFQDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDE 108 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccc
Confidence 3434444444443333332333444432 568899999999999888653 333333344555555432
Q ss_pred ----CHhHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHH
Q 045023 305 ----DASIRKRALELVYLLVNE---SNVKPLTKELIDYLEISDQEFKGDLTAKICSMV 355 (812)
Q Consensus 305 ----D~sIr~~aLell~~l~n~---~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la 355 (812)
+..||.+.-.++..|+.. ++|..++++|...+. .++..+.-....+..++
T Consensus 109 ~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 109 VFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 468888877777766543 789999999999886 44444443444444444
No 102
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=87.20 E-value=1.2 Score=45.90 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=46.4
Q ss_pred ecCCeEEEEEeecCCCCCCeEEEEEEEEeCCCccccceEEEEeecCceeEeeeCC--CCCCcCCCC
Q 045023 701 ESSSLRLTFNFSKPPGNPQTTLIQATFTNLSPNVYTDFVFQAAVPKFLQLHLDPA--SGNTLPASG 764 (812)
Q Consensus 701 ~~~~l~i~~~~~~~~~~~~~~~i~~~~~n~~~~~i~~f~fq~AVpK~~kL~l~p~--S~~~l~~~~ 764 (812)
...||+|...+.+. .+.+.+.++|+|++..+|++|.+|+.. .++-|....+ ....|+|++
T Consensus 40 ~g~GLeI~g~f~r~---~g~i~l~l~~~N~s~~~is~faIQfNk-NsFGL~p~~~~~~~~~L~pgq 101 (258)
T 2g30_A 40 KAKGLEISGTFTHR---QGHIYMEMNFTNKALQHMTDFAIQFNK-NSFGVIPSTPLAIHTPLMPNQ 101 (258)
T ss_dssp GTTTEEEEEEEEEE---TTEEEEEEEEEECSSSCBCCCEEEECC-BTTCCEESSCCCCCSCBCTTC
T ss_pred CCCcEEEEEEEEEe---CCEEEEEEEEecCCccceeeeEEEEcc-cccCcccCccccCCCccCCCC
Confidence 67899999988874 578999999999999999999999985 3455544221 224488876
No 103
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.90 E-value=3.7 Score=41.61 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=73.3
Q ss_pred HHHHHHhhcCCCc--chHHHHHHHHHHHHhhCHH---HHHH--hHhhhcccccccCHhHHHHHHHHHHHhcC--CCCHHH
Q 045023 257 INILGRFLSNRDN--NIRYVALNMLMKAITVDAQ---AVQR--HRATILECVKDLDASIRKRALELVYLLVN--ESNVKP 327 (812)
Q Consensus 257 i~~L~~fL~~~d~--niryvaL~~L~~l~~~~p~---~v~~--h~~~i~~cL~d~D~sIr~~aLell~~l~n--~~Nv~~ 327 (812)
+..|..+|.+.|+ .++..|...|..+...++. .+.. -...++.+|+.++..++..|...|..|+. ++|-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667788888888 7888888888888866542 2222 24557788888889999999999998874 456555
Q ss_pred H-----HHHHHHHhhh-cCHHHHHHHHHHHHHHHh
Q 045023 328 L-----TKELIDYLEI-SDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 328 I-----v~eLl~yl~~-~d~~~~~~li~~I~~la~ 356 (812)
| ++.|...|.. .+.+.++.++..+..++.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 5 3557777764 577888888878877763
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.86 E-value=13 Score=41.45 Aligned_cols=298 Identities=13% Similarity=0.138 Sum_probs=157.8
Q ss_pred HHHHhcCCCCchhhhH-HHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHH
Q 045023 198 KLLHVLGQGDADASDC-MNDILAQVATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVAL 276 (812)
Q Consensus 198 ~lL~~l~~~~~~~~~~-l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL 276 (812)
+++.+|.+.-|+..+. |+..+..+-. ....|..++++-+..+..+ +.....+.+|+.+|...|+.-.-++=
T Consensus 50 Q~I~kffk~FP~l~~~Ai~a~lDLcED-------ed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqtdd~~E~~~V~ 121 (507)
T 3u0r_A 50 QFIPKFFKHFPELADSAINAQLDLCED-------EDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQTDDSAEFNLVN 121 (507)
T ss_dssp HHHHHHGGGCGGGHHHHHHHHHHHHTC-------SSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhc-------ccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhccchHHHHHHH
Confidence 5667777777777654 4444443322 3457999999999999877 55667899999999988888888888
Q ss_pred HHHHHHHhhCHHHH-HHhHhhhcccccccCHhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhhhc--------
Q 045023 277 NMLMKAITVDAQAV-QRHRATILECVKDLDASIRKRALELVYLLV--------NESNVKPLTKELIDYLEIS-------- 339 (812)
Q Consensus 277 ~~L~~l~~~~p~~v-~~h~~~i~~cL~d~D~sIr~~aLell~~l~--------n~~Nv~~Iv~eLl~yl~~~-------- 339 (812)
++|..+...+|... ..-...|. ..|..+|.|+|..|..-+ +++-=.-|+.++..-+...
T Consensus 122 ~sL~sllk~Dpk~tl~~lf~~i~----~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~ 197 (507)
T 3u0r_A 122 NALLSIFKMDAKGTLGGLFSQIL----QGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLF 197 (507)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999998653 33323332 247899999998884221 1111111233333333221
Q ss_pred -----------CHHHHHHHHHHHHHHHh---hhCCchhHHHHHHHHHHhhcCccch-----HHHHHHHHHHH-Hh---CC
Q 045023 340 -----------DQEFKGDLTAKICSMVE---KFSPDKIWYIDQMLKVLSEAGNFVK-----DEVWHALIVVI-SN---AS 396 (812)
Q Consensus 340 -----------d~~~~~~li~~I~~la~---k~~~~~~w~vd~ll~lL~~~g~~v~-----~e~i~~i~~li-~~---~p 396 (812)
...-+.+++.-+..-|+ .|.+...-+||-++.++..+-.+++ ...++-++.-| -. -+
T Consensus 198 m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~ 277 (507)
T 3u0r_A 198 MKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLT 277 (507)
T ss_dssp HHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCC
T ss_pred HHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhcc
Confidence 12223455554444443 3666666688888888887644332 23333333321 11 11
Q ss_pred ------CcHHHHHHHHHHHHhhc---cchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHhccCC
Q 045023 397 ------DLHGYTVRALYRAVQTS---IEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIKHHSS 467 (812)
Q Consensus 397 ------~l~~~~v~~L~~~l~~~---~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~~~~~ 467 (812)
+.+-..++.+.+...-. ......+..+.-++=+|-.+........+ +.-+ ..+.-
T Consensus 278 e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~----------~~~~------~~p~l 341 (507)
T 3u0r_A 278 TPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGE----------NAGN------EEPKL 341 (507)
T ss_dssp CC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC------------------------------CC
T ss_pred ccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccc----------cccc------cCccc
Confidence 13444444444433211 11233444555566777664332100000 0000 00000
Q ss_pred CHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhccC-HHHHHHh
Q 045023 468 DITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVEKH-QNIRSTL 529 (812)
Q Consensus 468 ~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~~~-~~~~~~l 529 (812)
.-.--..+|-++-+|+.+.|+.. .+.--...--|.|.|=..+.++...+ ..+|..+
T Consensus 342 ~fS~vECLLy~fH~L~~k~P~~l------~e~~~~~~lkdfr~RLqy~ar~~q~yikkL~~~~ 398 (507)
T 3u0r_A 342 QFSYVECLLYSFHQLGRKLPDFL------TAKLNAEKLKDFKIRLQYFARGLQVYIRQLRLAL 398 (507)
T ss_dssp CHHHHHHHHHHHHHHHTTCTHHH------HCC--CCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhChhhh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112356667888888887532 11112344467888866666666433 3455554
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=86.18 E-value=13 Score=37.54 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=68.5
Q ss_pred hhhcccccccCH--hHHHHHHHHHHHhc--CCCCHHHH-----HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh--
Q 045023 295 ATILECVKDLDA--SIRKRALELVYLLV--NESNVKPL-----TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI-- 363 (812)
Q Consensus 295 ~~i~~cL~d~D~--sIr~~aLell~~l~--n~~Nv~~I-----v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~-- 363 (812)
..++..|..+|. .++..|...+..++ ++.|-..| ++-|...|...+.+.+..++.++..++..-..+..
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345567887777 88888888888887 34455554 57788899888999999999999999853222211
Q ss_pred ---HHHHHHHHHHhhcC-ccchHHHHHHHHHHHHhCCCcHHHH
Q 045023 364 ---WYIDQMLKVLSEAG-NFVKDEVWHALIVVISNASDLHGYT 402 (812)
Q Consensus 364 ---w~vd~ll~lL~~~g-~~v~~e~i~~i~~li~~~p~l~~~~ 402 (812)
--|..++++|...+ ..+.+.+...+..+ ...++.+..+
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~~~k~~i 132 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSNDKLKNLM 132 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSGGGHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcChhhHHHH
Confidence 13556777776533 33444444344443 3344444333
No 106
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.78 E-value=21 Score=36.59 Aligned_cols=128 Identities=9% Similarity=0.129 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-hhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcC--CCCHHHH
Q 045023 252 LRVLAINILGRFLSNRDNNIRYVALNMLMKAI-TVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVN--ESNVKPL 328 (812)
Q Consensus 252 L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~-~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n--~~Nv~~I 328 (812)
.+..++..|-.--...+ ..|.-.|.....++ ..+|..+-.....|+..-.|.+..+|+...+.+...|. .+-+..+
T Consensus 13 ~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~ 91 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV 91 (257)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554434445 68888888888854 45788888888888888888999999999999977764 4447778
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCc--cchHHHHHHHHHH
Q 045023 329 TKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGN--FVKDEVWHALIVV 391 (812)
Q Consensus 329 v~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~--~v~~e~i~~i~~l 391 (812)
++.|..+++..|+...+.+|...+ .-|+-..+|.+ ..++ .-.++.|..+..+
T Consensus 92 l~~L~~Ll~d~d~~V~K~~I~~~~---~iY~~~l~~i~--------~~~~~~~~~~~~W~~m~~l 145 (257)
T 3gs3_A 92 INVVSMLLRDNSAQVIKRVIQACG---SIYKNGLQYLC--------SLMEPGDSAEQAWNILSLI 145 (257)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHH---HHHHHHHHHHT--------TSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---HHHHHHHHHHh--------cCCCCcchHHHHHHHHHHH
Confidence 888888888777776666655443 34555555543 2322 1236788776654
No 107
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=85.10 E-value=7.4 Score=41.46 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhh---------CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCC--C
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITV---------DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNES--N 324 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~---------~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~--N 324 (812)
++..|.+.+...+.|++-.+|+.|..++.. ++..+++ ++..+...+..|-+.||+||..+|.-+ |
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~----lyslv~s~~~~V~k~AL~LL~v~V~~se~~ 236 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQW----LYTLCASLSRLVVKTALKLLLVFVEYSENN 236 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHH----HHHGGGCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHH----HHHHHcCccHHHHHHHHHHHHHHHccCccc
Confidence 567788888888999999999999999765 4444444 334445688999999999999887544 8
Q ss_pred HHHHHHHHHH
Q 045023 325 VKPLTKELID 334 (812)
Q Consensus 325 v~~Iv~eLl~ 334 (812)
...+.++...
T Consensus 237 ~~lv~~av~~ 246 (339)
T 3dad_A 237 APLFIRAVNS 246 (339)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 7777666554
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.79 E-value=11 Score=38.87 Aligned_cols=127 Identities=10% Similarity=0.132 Sum_probs=88.8
Q ss_pred CCCcchHHHHHHHHHHHHhh--------CHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 045023 266 NRDNNIRYVALNMLMKAITV--------DAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLE 337 (812)
Q Consensus 266 ~~d~niryvaL~~L~~l~~~--------~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~ 337 (812)
+++.++---+|+.|..++.. ...-.......+++-+-|.-..+|..+-+++..++.---...+.+-+.+-+.
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~k 177 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK 177 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHc
Confidence 45566666677777766532 1111122233456677888889999999888887765667778888888887
Q ss_pred hcCHHHHHHHHHHHHHHHhhhCCchhHHH---HHHHHHHhhcCccchHHHHHHHHHHH
Q 045023 338 ISDQEFKGDLTAKICSMVEKFSPDKIWYI---DQMLKVLSEAGNFVKDEVWHALIVVI 392 (812)
Q Consensus 338 ~~d~~~~~~li~~I~~la~k~~~~~~w~v---d~ll~lL~~~g~~v~~e~i~~i~~li 392 (812)
+-+.-.|.+++..++.+.++|.....-++ ..+.+++......|.+.+++.++.+.
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 77888999999999999999976555566 66666666666666666666665543
No 109
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.16 E-value=45 Score=40.92 Aligned_cols=108 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCC---CcchHHHHHHHHHHHHhhC-HH----HHHHhHhhhcccc
Q 045023 230 NAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNR---DNNIRYVALNMLMKAITVD-AQ----AVQRHRATILECV 301 (812)
Q Consensus 230 n~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~---d~niryvaL~~L~~l~~~~-p~----~v~~h~~~i~~cL 301 (812)
++++...-+|-..+-.+...++.-. ....+|.++ +.++||.|+.+|...+..- ++ -...-+..++.++
T Consensus 19 ~sd~~~r~~A~~~L~~~q~sp~aw~----~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l 94 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSSSTGWK----ICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYI 94 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHSTTHHH----HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhHHH----HHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 3456677777777766665555333 333344443 7899999999999887621 22 2223334444444
Q ss_pred c-----ccCHhHHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhcCH
Q 045023 302 K-----DLDASIRKRALELVYLLV---NESNVKPLTKELIDYLEISDQ 341 (812)
Q Consensus 302 ~-----d~D~sIr~~aLell~~l~---n~~Nv~~Iv~eLl~yl~~~d~ 341 (812)
. +.+.+||.+.-.++..++ =..+|...+.+|+..+...+.
T Consensus 95 ~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~ 142 (980)
T 3ibv_A 95 KELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ 142 (980)
T ss_dssp HHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh
Confidence 3 356789888666666554 346888899998888865443
No 110
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.81 E-value=9.1 Score=44.38 Aligned_cols=79 Identities=10% Similarity=0.210 Sum_probs=41.7
Q ss_pred HHHhhhcCHHHHHHHHHHHHHHHhhhCCchh-------HHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCcHHH----
Q 045023 333 IDYLEISDQEFKGDLTAKICSMVEKFSPDKI-------WYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGY---- 401 (812)
Q Consensus 333 l~yl~~~d~~~~~~li~~I~~la~k~~~~~~-------w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l~~~---- 401 (812)
++.|+..|-..|-..+.-+..++..-+.... --+..|+.+|....+.+..|.+--+..+.+.++++|.-
T Consensus 128 l~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFE 207 (651)
T 3grl_A 128 LSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFE 207 (651)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3444445555555555555555533222111 13445666666666666677766666666666665542
Q ss_pred -HHHHHHHHHh
Q 045023 402 -TVRALYRAVQ 411 (812)
Q Consensus 402 -~v~~L~~~l~ 411 (812)
+..+|+..+.
T Consensus 208 naFe~Lf~Ii~ 218 (651)
T 3grl_A 208 NAFERLLDIIT 218 (651)
T ss_dssp THHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 3345555554
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=82.35 E-value=70 Score=39.61 Aligned_cols=103 Identities=8% Similarity=0.104 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhccccc---
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFL-SNRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVK--- 302 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL-~~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~--- 302 (812)
+++..-+|-+.+-.+..+++.-..+. .+| .+.++++||.|+.+|...+..+ ++-...-+..++.++.
T Consensus 41 ~~~~r~qA~~~L~q~q~sp~aw~~~~----~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~ 116 (1073)
T 3gjx_A 41 EGAQQRMAQEVLTHLKEHPDAWTRVD----TILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTS 116 (1073)
T ss_dssp SHHHHHHHHHHHHTSSCCSCHHHHHT----CC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchHHHHHH----HHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHc
Confidence 45566677777777776665433333 333 3468899999999999998753 3322223333444332
Q ss_pred ------ccCHhHHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhh
Q 045023 303 ------DLDASIRKRALELVYLLV---NESNVKPLTKELIDYLEI 338 (812)
Q Consensus 303 ------d~D~sIr~~aLell~~l~---n~~Nv~~Iv~eLl~yl~~ 338 (812)
..+..++.+--.++..++ =.++|...+.+|...+..
T Consensus 117 ~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~ 161 (1073)
T 3gjx_A 117 SDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT 161 (1073)
T ss_dssp TCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC
Confidence 135666644444444443 335788888888887754
No 112
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.70 E-value=35 Score=31.41 Aligned_cols=114 Identities=15% Similarity=0.216 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
.-+..+|.+-.|- .++.--+-|+..|.+-|.++++++.+.||..|-.++.....-|......
T Consensus 22 dw~~ileicD~I~---~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas--------------- 83 (140)
T 3ldz_A 22 DWGLILDICDKVG---QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS--------------- 83 (140)
T ss_dssp CHHHHHHHHHHHT---TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS---------------
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh---------------
Confidence 3345555554433 2222334578888888999999999999998877776543333322110
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchh-HHHHHHHHHHhhcC
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKI-WYIDQMLKVLSEAG 377 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~-w~vd~ll~lL~~~g 377 (812)
+..++||..-+...++.++..+..-|..-++.|..+.. -++..+.+.|+..|
T Consensus 84 --------------~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 136 (140)
T 3ldz_A 84 --------------RDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQG 136 (140)
T ss_dssp --------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHcc
Confidence 01111111111234667777777777777777754432 13344444455554
No 113
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=75.88 E-value=1.4e+02 Score=36.82 Aligned_cols=153 Identities=7% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHhccCC--CcceeccC-----------------CCchhHHHHHHHHhcCCCCCcccc
Q 045023 124 LALCALGNICSAEMARDLAPEVERLLQFR--DPNIRKKP-----------------KCLDGLVKTLRDVVNSPYAPEYDI 184 (812)
Q Consensus 124 lAL~~Ls~I~~~e~~~~l~~~V~~ll~~~--~pyVRKkA-----------------~~v~~lv~~L~~L~~~~~~pe~~~ 184 (812)
-.|-.++++...++.+.+.+.+.+.+.++ ++..|=+| .+++.+++.|-++....
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~------- 507 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKK------- 507 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcc-------
Confidence 56677888888899999999998888763 34444333 12333333333332210
Q ss_pred ccCCChhHHHH--HHHHHHhcCCCCchhhhHHHHHHHHHhhccccCCCCcchHHHHHHHHHHhcCCC--h----------
Q 045023 185 AGITDPFLHIR--LLKLLHVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDN--G---------- 250 (812)
Q Consensus 185 ~~~~dpwlqv~--lL~lL~~l~~~~~~~~~~l~diL~~v~~~~~~~kn~~~aVl~e~v~~i~~i~~~--~---------- 250 (812)
...||...++ ++-++..|++.-....+.+..++..+..... ...+.|.-.|+.++..+..+ .
T Consensus 508 -~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~---~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 508 -RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH---ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp -CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred -ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 0124555554 4466666654322222334445554444320 11234555555555544211 0
Q ss_pred -hHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCH
Q 045023 251 -GLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDA 287 (812)
Q Consensus 251 -~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p 287 (812)
......++.+...+..-++.-+..+.+.+..++..-|
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 0112223333333333455666677777776666543
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=74.84 E-value=1.7e+02 Score=36.14 Aligned_cols=168 Identities=10% Similarity=0.075 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHhhh----cCHHHHHHHHHHHHHHHhhhCC--------chhHHHHHHHHHHhhcCccchHHHHHHHHH
Q 045023 323 SNVKPLTKELIDYLEI----SDQEFKGDLTAKICSMVEKFSP--------DKIWYIDQMLKVLSEAGNFVKDEVWHALIV 390 (812)
Q Consensus 323 ~Nv~~Iv~eLl~yl~~----~d~~~~~~li~~I~~la~k~~~--------~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~ 390 (812)
.--.++++++...+.. .++.++..++.+++.++.+|-. .-.|+.+.+.+.+..+ + .+-+...++
T Consensus 387 ~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~-~---~~~~~~~Lk 462 (1056)
T 1lsh_A 387 QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRA-K---EEEIVLALK 462 (1056)
T ss_dssp CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT-C---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC-C---hHHHHHHHH
Confidence 4567778888877754 4677889999999999988732 1356666665555433 2 333335555
Q ss_pred HHHh--CCCcHHHHHHHHHHHHhh-----ccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHHHHHHh
Q 045023 391 VISN--ASDLHGYTVRALYRAVQT-----SIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVVEIAIK 463 (812)
Q Consensus 391 li~~--~p~l~~~~v~~L~~~l~~-----~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l~~~l~ 463 (812)
-+.| .|+ ++..+..++.. ...+..+...++|.+..+.+.. ++.+-+++..++.
T Consensus 463 aLGN~g~p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----------------p~~v~~il~~i~~ 522 (1056)
T 1lsh_A 463 ALGNAGQPN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----------------PRKVQEIVLPIFL 522 (1056)
T ss_dssp HHHHHTCGG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----------------HHHHHHHHHHHHH
T ss_pred HhhccCChh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc----------------hHHHHHHHHHHhc
Confidence 5554 333 34444444432 1124456778999998887531 2345567777777
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCChHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q 045023 464 HHSSDITTKAMAMVALLKLSSRFPSCSERIRDIIVQNKGSLVLELQQRSIEFNSIVE 520 (812)
Q Consensus 464 ~~~~~~~vk~~iLtAl~KL~~r~p~~~~~i~~ll~~~~~s~~~evqqRA~ey~~Ll~ 520 (812)
+..++.++|...+..+++- .|. ...+..+.+.-.++.+.+| +++-|..|-+
T Consensus 523 n~~e~~EvRiaA~~~Lm~t---~P~-~~~l~~ia~~l~~E~~~QV--~sfv~S~l~s 573 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFFES---KPS-VALVSMVAVRLRREPNLQV--ASFVYSQMRS 573 (1056)
T ss_dssp CTTSCHHHHHHHHHHHHHT---CCC-HHHHHHHHHHHTTCSCHHH--HHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHH---CcC-HHHHHHHHHHHhhCchHHH--HHHHHHHHHH
Confidence 7778899999888887652 364 3455555554445555444 5666666654
No 115
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=74.21 E-value=28 Score=35.47 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=101.0
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCHHHHH---------HhHhhhcccccccCHhHHHHHHHHHHHhcCCCC--------H
Q 045023 263 FLSNRDNNIRYVALNMLMKAITVDAQAVQ---------RHRATILECVKDLDASIRKRALELVYLLVNESN--------V 325 (812)
Q Consensus 263 fL~~~d~niryvaL~~L~~l~~~~p~~v~---------~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~N--------v 325 (812)
-|.+++=-.|--|++.|..++...+.... .....+-.++.|.+..+...+|+++..++..-- .
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 35667777888888888888765432211 111223345679999999999999988875311 2
Q ss_pred ----HHHHHHHHHH-hhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCC--Cc
Q 045023 326 ----KPLTKELIDY-LEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNAS--DL 398 (812)
Q Consensus 326 ----~~Iv~eLl~y-l~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p--~l 398 (812)
..++.-|++= +.+.....+...+..+..+++...+. ..+++.++..+......+..+++..+.+++.++. .+
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 2334444432 34456778888888888887654432 3467777777777777788899988888887632 22
Q ss_pred H-H----HHHHHHHHHHhhccchHHHHHHHHHhhhhccc
Q 045023 399 H-G----YTVRALYRAVQTSIEQESLVRVAIWCIGEYGD 432 (812)
Q Consensus 399 ~-~----~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~ 432 (812)
. . .++..+...+.+ ....++..+.=++||...
T Consensus 176 ~~k~~l~~i~~~l~k~l~d--~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGH--GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTC--SSHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence 1 1 122333444442 233455666666665543
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.36 E-value=35 Score=39.94 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHH---HHHh-H--hhhcccccccCHhHHHHHHHHHHHhcCCCC
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQA---VQRH-R--ATILECVKDLDASIRKRALELVYLLVNESN 324 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~---v~~h-~--~~i~~cL~d~D~sIr~~aLell~~l~n~~N 324 (812)
.+-++...|.+.|++.|.-|+.+|..+++ ++.. +.+. . ..|..+|.|++..||..|...|-.|+-+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 34445556899999999999999999986 5533 2221 1 123468999999999999999988886654
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.07 E-value=45 Score=41.29 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=30.8
Q ss_pred chhHHHHHHHHhcc----c----chhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhccCchhhHH
Q 045023 84 EKRIGYLGLMLLLD----E----RQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMAR 139 (812)
Q Consensus 84 ~KRlgYL~~~~ll~----~----~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~~e~~~ 139 (812)
.++.++|++..+.. . ..++.--+.+.+.+-+...++..+-++|++|||++.++.++
T Consensus 411 l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~ 474 (1056)
T 1lsh_A 411 LRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIK 474 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHH
Confidence 44556666654321 1 22334444455555555556666777777777777765444
No 118
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.00 E-value=55 Score=30.47 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
.-+..+|.+-.|-. ++.--+-|+..|.+-|.++++++.+.||..|-.++.....-|+..... ++
T Consensus 28 dw~~ileicD~I~~---~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-------------~~ 91 (149)
T 3g2s_A 28 DWASINGFCEQLNE---DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-------------FR 91 (149)
T ss_dssp CHHHHHHHHHHGGG---SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-------------HH
T ss_pred CHHHHHHHHHHHHC---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-------------HH
Confidence 34455555555432 222334578888888889999999999998888876554444332211 11
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHh-hhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcC
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYL-EISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAG 377 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl-~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g 377 (812)
-|+-|.+++... |. ...+.+++..++.-|..-++.|..+.. +....+.|+..|
T Consensus 92 Fl~eL~kl~~~k-----------~~~~~~~~~Vk~kil~li~~W~~~f~~~p~--i~~~Y~~Lk~~G 145 (149)
T 3g2s_A 92 FLNELIKVVSPK-----------YLGSRTSEKVKNKILELLYSWTVGLPEEVK--IAEAYQMLKKQG 145 (149)
T ss_dssp HHHHHHHHHCTT-----------TTGGGSCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHccc-----------ccCCCCCHHHHHHHHHHHHHHHHHhCCCch--HHHHHHHHHHCc
Confidence 122222222221 21 124566666666666666666655443 333444444443
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=70.45 E-value=1.1e+02 Score=37.84 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhcCC--CCHhHHHHHHHHHhccC---ch----hhHHHHHHHHHHhccC
Q 045023 101 EVLMLVTNSLKQDLNH--TNQYIVGLALCALGNIC---SA----EMARDLAPEVERLLQF 151 (812)
Q Consensus 101 el~~L~~Nsl~kDL~s--~n~~i~~lAL~~Ls~I~---~~----e~~~~l~~~V~~ll~~ 151 (812)
++.-.+.+.+++-+.+ .+-..+-.|+=++|.|. .+ ...+.+++.+..++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~ 506 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVK 506 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhc
Confidence 5666667777776665 34455555555555553 33 3455566666666653
No 120
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.68 E-value=6.1 Score=36.61 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---CchhhH-----HHHHHHHHHhccCCCcceec
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEMA-----RDLAPEVERLLQFRDPNIRK 158 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~~-----~~l~~~V~~ll~~~~pyVRK 158 (812)
-+.+-++-+...+++-.--++-.|+|=|+|+|+.++-+||..|-.+ |...+. +.+..++.+++...++-||+
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~ 103 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCE 103 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHH
Confidence 3445566666777777788889999999999999999999877443 333222 34555556666556777887
Q ss_pred cC
Q 045023 159 KP 160 (812)
Q Consensus 159 kA 160 (812)
|+
T Consensus 104 ki 105 (140)
T 3ldz_A 104 KL 105 (140)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=68.36 E-value=2.4e+02 Score=35.24 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=59.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhcccccc-------cCHhHHHHHHHHHHHhcC---CCCHHHHH
Q 045023 265 SNRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVKD-------LDASIRKRALELVYLLVN---ESNVKPLT 329 (812)
Q Consensus 265 ~~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d-------~D~sIr~~aLell~~l~n---~~Nv~~Iv 329 (812)
.+.+.++||.|+..|...+..+ ++.-..-+..++.++.. .+..||.+.-.++..|+. .++|..++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 3567899999999999888652 33333334445555431 468999887777766653 36899999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 330 KELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 330 ~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
.+|...+.. +...+.-....+..+++
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 999988865 44444444444555544
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.54 E-value=18 Score=34.38 Aligned_cols=56 Identities=7% Similarity=0.092 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV 290 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v 290 (812)
.-+...|.+..|-. .. .-.+-|+..|.+-|.++++++++.||..|-.++......|
T Consensus 32 Dw~~~leicD~I~~-~~--~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 32 DWSLIMDICDKVGS-TP--NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp CHHHHHHHHHHHHH-SS--SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHhC-CC--ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 44555555544433 11 2234577888888899999999999999888876543333
No 123
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=61.98 E-value=71 Score=32.20 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=68.6
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcC
Q 045023 261 GRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISD 340 (812)
Q Consensus 261 ~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d 340 (812)
..+..+..-.+||+|...|.+. ...++++.-.+..+ -.|+.=-||--+-..+..+|-...-+..++.+..++.+.+
T Consensus 77 ~~L~~~~~deVR~~Av~lLg~~-~~~~~~L~~ir~~v---a~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n 152 (240)
T 3l9t_A 77 FLAYQSDVYQVRMYAVFLFGYL-SKDKEILIFMRDEV---SKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSN 152 (240)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHT-TTSHHHHHHHHHTG---GGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSS
T ss_pred HHHHhCcchHHHHHHHHHHHhc-cCcHHHHHHHHHHh---CCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Confidence 3444555557777777766655 33344433322211 2233334444443344343321111235556667777777
Q ss_pred HHHHHHHHHHHHHHHhh--hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHhCCCc
Q 045023 341 QEFKGDLTAKICSMVEK--FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDL 398 (812)
Q Consensus 341 ~~~~~~li~~I~~la~k--~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~~p~l 398 (812)
..+|+.++..+..-+.+ +..+.+-.+..+-.+......||...+.+.+.++-..+|+.
T Consensus 153 ~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 153 LHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp HHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 77777777665432222 22333334444444444445577777777777776666664
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.63 E-value=23 Score=33.01 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHH
Q 045023 233 NAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAV 290 (812)
Q Consensus 233 ~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v 290 (812)
-+...|.+-.|-.- +.--+-|+..|.+-|.++++++.+.||..|-.++.....-|
T Consensus 19 w~~~leicD~I~~~---~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f 73 (148)
T 1mhq_A 19 WSAIQNFCEQVNTD---PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF 73 (148)
T ss_dssp HHHHHHHHHHHHHS---SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 34455555444332 22234577888888899999999999999988887644333
No 125
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=60.75 E-value=26 Score=33.51 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
.-+...|.+..|-.- +.--+-|+..|.+-|.++++++++.||..|-.++......|.
T Consensus 30 Dw~~ileicD~I~~~---~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh 86 (171)
T 1juq_A 30 DWEYIIGFCDQINKE---LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH 86 (171)
T ss_dssp CHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 345555555554432 222345778888888999999999999999888876554444
No 126
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=60.65 E-value=50 Score=35.87 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHH
Q 045023 491 ERIRDIIVQNKGSLVLELQQRSIEFNS 517 (812)
Q Consensus 491 ~~i~~ll~~~~~s~~~evqqRA~ey~~ 517 (812)
..+-+.+..|.+|.+..|-+||..+|.
T Consensus 337 ~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 337 EPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 345567778889999999999988874
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=50.79 E-value=86 Score=29.11 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=64.3
Q ss_pred CCCCCChhHHHHHhhccCCCC-chhHHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cchhh-
Q 045023 63 GYPTHFGQMECLKSIASAGFP-EKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEM- 137 (812)
Q Consensus 63 G~~~~~~~~evikli~s~~~~-~KRlgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~- 137 (812)
..+...-+-+.|.=..++... .---+.+-++-..+.+++-.--++-.|+|=++|+|+.++-+||..|-.+ |...+
T Consensus 5 ~~~~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh 84 (149)
T 3g2s_A 5 PAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH 84 (149)
T ss_dssp CCCSCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred cCCCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334444555566655555553 3333456667777777778888999999999999999999999877543 33332
Q ss_pred ----HHHHHHHHHHhccC------CCcceeccC
Q 045023 138 ----ARDLAPEVERLLQF------RDPNIRKKP 160 (812)
Q Consensus 138 ----~~~l~~~V~~ll~~------~~pyVRKkA 160 (812)
-+.+..++.+++.. .++-||+|.
T Consensus 85 ~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 117 (149)
T 3g2s_A 85 DEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI 117 (149)
T ss_dssp HHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence 23345556677653 355677665
No 128
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=50.10 E-value=1.8e+02 Score=28.29 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh------cCHHHHHHHHHHHHHHHhhh----CCchhHHHHHHHHHHhh--
Q 045023 308 IRKRALELVYLLVNESNVKPLTKELIDYLEI------SDQEFKGDLTAKICSMVEKF----SPDKIWYIDQMLKVLSE-- 375 (812)
Q Consensus 308 Ir~~aLell~~l~n~~Nv~~Iv~eLl~yl~~------~d~~~~~~li~~I~~la~k~----~~~~~w~vd~ll~lL~~-- 375 (812)
.|+.||+- |-++.-+..+++-+..|+.+ .|.+.-..+.+-+..+..+= .|-....+-.++.++-.
T Consensus 24 ~r~~aL~s---L~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 24 MKDIAIEC---LEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp THHHHHHH---HHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHH---HhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 35555543 34466666777777766643 13333333333333333321 12222233333333321
Q ss_pred -cCccchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHhhccchHHHHHHHHHhhhhccccc
Q 045023 376 -AGNFVKDEVWHALIVVISN----ASDLHGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDML 434 (812)
Q Consensus 376 -~g~~v~~e~i~~i~~li~~----~p~l~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l 434 (812)
++..+++.....+..++++ +|.++.+++..+.+.+.+...+-...=.++|.+++.|...
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~ 164 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNV 164 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHH
Confidence 1124566666666666654 5789999999999998865566666777889898888753
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=49.31 E-value=4.4e+02 Score=32.49 Aligned_cols=199 Identities=8% Similarity=0.137 Sum_probs=100.7
Q ss_pred CCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHhhh
Q 045023 266 NRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVN-------ESNVKPLTKELIDYLEI 338 (812)
Q Consensus 266 ~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n-------~~Nv~~Iv~eLl~yl~~ 338 (812)
+.+++.|--|.+.|..+ +.+|++.+.. ..++ -.+.+..+|--|+.+|-..++ ++....|=+.|++|+..
T Consensus 39 ~p~~~~r~qA~~~L~q~-q~sp~aw~~~-~~iL--~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~ 114 (1073)
T 3gjx_A 39 HGEGAQQRMAQEVLTHL-KEHPDAWTRV-DTIL--EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIK 114 (1073)
T ss_dssp CSSHHHHHHHHHHHHTS-SCCSCHHHHH-TCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-HcCchHHHHH-HHHh--cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHH
Confidence 34455555555554332 3345544322 1122 124567788877777766554 33344455556666643
Q ss_pred ---------cCHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHhhcCccchHHHHHHHHHHH-Hh---C-----CCc-
Q 045023 339 ---------SDQEFKGDLTAKICSMVEK-FSPDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVI-SN---A-----SDL- 398 (812)
Q Consensus 339 ---------~d~~~~~~li~~I~~la~k-~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li-~~---~-----p~l- 398 (812)
.+..++.++...++.++.+ |+....-+++.++..+..+... -+..-.++..+ .. . ...
T Consensus 115 ~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~--~~~~L~IL~~L~EEV~d~~~~~l~~~r 192 (1073)
T 3gjx_A 115 TSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESL--CQNNMVILKLLSEEVFDFSSGQITQVK 192 (1073)
T ss_dssp HHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHTTSHHHHBCHHH
T ss_pred HccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHhcccccccHHH
Confidence 2466788888888888876 5554444677777766532211 11111111111 11 0 000
Q ss_pred -----------HHHHHHHHHHHHhhccchHHHHHHHHHhhhhcccccccCccccccCCCCccChhhHHHHH-HHHHhccC
Q 045023 399 -----------HGYTVRALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNNVGVLNIEDPITVTESDAVDVV-EIAIKHHS 466 (812)
Q Consensus 399 -----------~~~~v~~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~~~~~~~~~~~~v~~~~vi~~l-~~~l~~~~ 466 (812)
-..++.-+...+.. .....+...+.=++|-|...+.-+ . +-..++++++ ..++
T Consensus 193 ~~~lk~~L~~~~~~Il~ll~~iL~~-~~~~~lv~~~L~~L~~~~sWI~i~-~---------i~~~~ll~~L~~~~L---- 257 (1073)
T 3gjx_A 193 AKHLKDSMCNEFSQIFQLCQFVMEN-SQNAPLVHATLETLLRFLNWIPLG-Y---------IFETKLISTLIYKFL---- 257 (1073)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTTSCTH-H---------HHSSSHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHhcCHH-H---------hccchHHHHHHHHhc----
Confidence 01122222333332 234456667777888887776321 1 1113455544 2222
Q ss_pred CCHHHHHHHHHHHHHHHcc
Q 045023 467 SDITTKAMAMVALLKLSSR 485 (812)
Q Consensus 467 ~~~~vk~~iLtAl~KL~~r 485 (812)
..+.+|...+-++.-+..+
T Consensus 258 ~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 258 NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp SSHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHhc
Confidence 3577888888888877765
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.61 E-value=40 Score=31.35 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=51.2
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhcc---Cchhh-----HHHHHHHHHHhccC------CC
Q 045023 88 GYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGNI---CSAEM-----ARDLAPEVERLLQF------RD 153 (812)
Q Consensus 88 gYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~I---~~~e~-----~~~l~~~V~~ll~~------~~ 153 (812)
+.+-++-+.+.+++-.--++-.|+|=|+|+|+.++-+||..|-.+ |...+ .+.+..++.+++.. .+
T Consensus 21 ~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~ 100 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT 100 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC
Confidence 345555566666667778889999999999999999999877543 33333 24566677777764 35
Q ss_pred cceeccC
Q 045023 154 PNIRKKP 160 (812)
Q Consensus 154 pyVRKkA 160 (812)
+-||+|+
T Consensus 101 ~~Vk~ki 107 (148)
T 1mhq_A 101 GKVKGRV 107 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5677775
No 131
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=45.72 E-value=2.5e+02 Score=28.23 Aligned_cols=130 Identities=9% Similarity=0.015 Sum_probs=81.0
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHH-hhcCCCcchHHHHHHHHHHHHh-hCHHHHHHhHhhhcccccccCHhH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGR-FLSNRDNNIRYVALNMLMKAIT-VDAQAVQRHRATILECVKDLDASI 308 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~-fL~~~d~niryvaL~~L~~l~~-~~p~~v~~h~~~i~~cL~d~D~sI 308 (812)
....|-+-|+..+....... -+...+.. +-....=-+||.+-..+..++. .+|+.. ...+.....|++.-+
T Consensus 83 ~~deVR~~Av~lLg~~~~~~----~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~---l~~~~~W~~d~n~~V 155 (240)
T 3l9t_A 83 DVYQVRMYAVFLFGYLSKDK----EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA---LPIIDEWLKSSNLHT 155 (240)
T ss_dssp SSHHHHHHHHHHHHHTTTSH----HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT---HHHHHHHHHCSSHHH
T ss_pred cchHHHHHHHHHHHhccCcH----HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH---HHHHHHHhcCCCHHH
Confidence 45678888888777663221 23344444 4344445588988888888875 666531 234556788999999
Q ss_pred HHHHHHHHHH----hcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 045023 309 RKRALELVYL----LVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQML 370 (812)
Q Consensus 309 r~~aLell~~----l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll 370 (812)
||-|++-+.- ..-..|-..+++-|-....+.+..+++-+-..+..++.. +.+|..+++-
T Consensus 156 RR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~---~Pd~V~~~~~ 218 (240)
T 3l9t_A 156 RRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK---FPDLVKIELK 218 (240)
T ss_dssp HHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh---CHHHHHHHHH
Confidence 9999998733 223455555555444444455555666666777776653 5567665543
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.16 E-value=2.5e+02 Score=27.77 Aligned_cols=115 Identities=12% Similarity=0.211 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHH
Q 045023 232 GNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKR 311 (812)
Q Consensus 232 ~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~ 311 (812)
.-+..+|..-.|-. . +.--+-|+..|.+-|.++++|+++.||..|-.++..-..-|...... ++
T Consensus 25 dw~~ileicD~I~~-~--~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-------------~~ 88 (226)
T 3zyq_A 25 DWESILQICDLIRQ-G--DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-------------KQ 88 (226)
T ss_dssp CHHHHHHHHHHHHT-T--SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-------------HH
T ss_pred CHHHHHHHHHHHhC-C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-------------HH
Confidence 44566666666543 2 12224578888888899999999999998877765433333222111 11
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhH-HHHHHHHHHhhcC
Q 045023 312 ALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIW-YIDQMLKVLSEAG 377 (812)
Q Consensus 312 aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w-~vd~ll~lL~~~g 377 (812)
-|+-|..|+ . ...+.+++..++.-|..-++.|..+.+. ++..+.+.|+..|
T Consensus 89 fl~~l~~l~-------------~--~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 140 (226)
T 3zyq_A 89 TMEELKDLL-------------K--RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEG 140 (226)
T ss_dssp HHHHHHHHH-------------H--HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-------------c--cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Confidence 112111111 0 1345677777777777777777654432 3444555555555
No 133
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=42.76 E-value=67 Score=37.56 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHhcccchhH--HHH----HHHHHHhhcCCCCHhHHHHHHHHHhccCc---hhhHHH
Q 045023 71 MECLKSIASAGFPEKRIGYLGLMLLLDERQEV--LML----VTNSLKQDLNHTNQYIVGLALCALGNICS---AEMARD 140 (812)
Q Consensus 71 ~evikli~s~~~~~KRlgYL~~~~ll~~~~el--~~L----~~Nsl~kDL~s~n~~i~~lAL~~Ls~I~~---~e~~~~ 140 (812)
..+++.+.|++-.+|..+..+++.+.. +++. +++ +...+.+=|.|++..||.-|..+|.|++. ++++..
T Consensus 37 ~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 37 LPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp HHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 467888899999999999999999875 3333 222 22234555889999999999999888853 455554
No 134
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.99 E-value=2.4e+02 Score=34.51 Aligned_cols=122 Identities=10% Similarity=0.115 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhC-----HHHHHHhHhhhcccccccC-HhHHHHHHHHHHHhcCCC---
Q 045023 254 VLAINILGRFLS-NRDNNIRYVALNMLMKAITVD-----AQAVQRHRATILECVKDLD-ASIRKRALELVYLLVNES--- 323 (812)
Q Consensus 254 ~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~-----p~~v~~h~~~i~~cL~d~D-~sIr~~aLell~~l~n~~--- 323 (812)
..+++.|..... +..- .|..+|..+..++-.+ ++-..+-...++.||.|+. ..||..|-+.|..|+--.
T Consensus 800 ~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~ 878 (997)
T 1vsy_5 800 AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE 878 (997)
T ss_dssp HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch
Confidence 334444444444 3344 9999999877666432 2222344567889999999 999999999998884333
Q ss_pred -CHHHHHHHHHHHhhh---c---------CHHHHHHHHHHHHHHHhhhCCc---hhHHHHHHHHHHhhc
Q 045023 324 -NVKPLTKELIDYLEI---S---------DQEFKGDLTAKICSMVEKFSPD---KIWYIDQMLKVLSEA 376 (812)
Q Consensus 324 -Nv~~Iv~eLl~yl~~---~---------d~~~~~~li~~I~~la~k~~~~---~~w~vd~ll~lL~~~ 376 (812)
.+..++.++.+-+.. . +.--+--.|..++.++.-||=+ ..|.=+++..+-..+
T Consensus 879 ~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~ 947 (997)
T 1vsy_5 879 QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWA 947 (997)
T ss_dssp HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHh
Confidence 334444444432211 0 0124455677788888888744 689888886654444
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=40.45 E-value=2.3e+02 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=14.2
Q ss_pred cccccCHhHHHHHHHHHHHhc
Q 045023 300 CVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 300 cL~d~D~sIr~~aLell~~l~ 320 (812)
-|+..++.+..+||.||=.++
T Consensus 60 rl~~~n~~vql~AL~LLd~~v 80 (163)
T 1x5b_A 60 RVNHKVPHVALQALTLLGACV 80 (163)
T ss_dssp HHTCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH
Confidence 345567778888888775554
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.28 E-value=59 Score=29.96 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHH-H---HHHhHhhhccccc-----c----cC--HhHHHHHHHHHHHhc
Q 045023 256 AINILGRFLSNRDNNIRYVALNMLMKAITVDAQ-A---VQRHRATILECVK-----D----LD--ASIRKRALELVYLLV 320 (812)
Q Consensus 256 ~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~-~---v~~h~~~i~~cL~-----d----~D--~sIr~~aLell~~l~ 320 (812)
....|.+-|..+++|++|-+|+.|..++...+. + +++|...|-.|.. | +| .-||.+|=|++-.|-
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 455666667788999999999999999966433 2 3445444433432 2 22 578888888888877
Q ss_pred CCCCH
Q 045023 321 NESNV 325 (812)
Q Consensus 321 n~~Nv 325 (812)
++++.
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 77653
No 137
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=38.03 E-value=7.1e+02 Score=31.35 Aligned_cols=76 Identities=7% Similarity=0.003 Sum_probs=44.4
Q ss_pred hhCHHHHHHhHhhhc----ccccccCHhHHHHHHH---HHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHh
Q 045023 284 TVDAQAVQRHRATIL----ECVKDLDASIRKRALE---LVYLLVNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVE 356 (812)
Q Consensus 284 ~~~p~~v~~h~~~i~----~cL~d~D~sIr~~aLe---ll~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~ 356 (812)
..+..+++.|...|+ .|+.+.|..++.-+-. .+|..-+.-.-++|+..|..++......=...+...+..++.
T Consensus 388 ~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 388 STHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 334455666666555 3567788888775544 467766655567788888887765433223334444555554
Q ss_pred hhC
Q 045023 357 KFS 359 (812)
Q Consensus 357 k~~ 359 (812)
.++
T Consensus 468 ~~~ 470 (1323)
T 3s4w_B 468 LNA 470 (1323)
T ss_dssp HCH
T ss_pred cCH
Confidence 443
No 138
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.52 E-value=55 Score=30.66 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHhhCHH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLS-NRDNNIRYVALNMLMKAITVDAQ 288 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~-~~d~niryvaL~~L~~l~~~~p~ 288 (812)
..-+...|.+-.|-. .. .--+-|+..|.+-|. ++++++++.||..|-.++.....
T Consensus 32 ~Dw~~~leicD~I~~-~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~ 87 (157)
T 1elk_A 32 EDWALNMEICDIINE-TE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH 87 (157)
T ss_dssp CCHHHHHHHHHHHHH-SS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHHHHhC-CC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH
Confidence 345556666655432 11 223457788888886 47889999999999888876433
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.89 E-value=1.8e+02 Score=28.56 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHH
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQ 291 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~ 291 (812)
..-+...|..-.|-. ++.-.+-|+..|.+-|.++++++++.||..|-.++..-...|.
T Consensus 21 ~dw~~~leicd~i~~---~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 21 PDWPSILLICDEINQ---KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp CCHHHHHHHHHHHHT---TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cCHHHHHHHHHhhcC---CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 344555665555432 2222345777888888899999999999999888776544443
No 140
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=35.80 E-value=55 Score=32.71 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHHHhhCH--HHHHH---hHhhhcccccccCHhHHHHHHHHHHHhcCCC---C-HHHHHHHHHHH
Q 045023 268 DNNIRYVALNMLMKAITVDA--QAVQR---HRATILECVKDLDASIRKRALELVYLLVNES---N-VKPLTKELIDY 335 (812)
Q Consensus 268 d~niryvaL~~L~~l~~~~p--~~v~~---h~~~i~~cL~d~D~sIr~~aLell~~l~n~~---N-v~~Iv~eLl~y 335 (812)
+....|..+.+|..++.... +.+-. ....|..||..+.+.+|+.+++||.++|.-. . ...+++-|-.|
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~ 143 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 143 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Confidence 34566677777666654322 11212 2355778899999999999999999988654 4 56666555543
No 141
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=35.26 E-value=44 Score=36.20 Aligned_cols=70 Identities=7% Similarity=0.027 Sum_probs=47.1
Q ss_pred CCcchHHHHHHHHHHHHhhCH--HHHHH---hHhhhcccccccCHhHHHHHHHHHHHhcCC---CC-HHHHHHHHHHHh
Q 045023 267 RDNNIRYVALNMLMKAITVDA--QAVQR---HRATILECVKDLDASIRKRALELVYLLVNE---SN-VKPLTKELIDYL 336 (812)
Q Consensus 267 ~d~niryvaL~~L~~l~~~~p--~~v~~---h~~~i~~cL~d~D~sIr~~aLell~~l~n~---~N-v~~Iv~eLl~yl 336 (812)
.|.++.|..+++|..++.... +.+-. ....|..||....+.+|+.+++||.++|.- .| ...+++-+-.|-
T Consensus 132 ~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 132 YDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp -CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 345777888888777764322 11222 235577889999999999999999988853 45 677776665543
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=34.27 E-value=5.9e+02 Score=31.00 Aligned_cols=170 Identities=14% Similarity=0.205 Sum_probs=94.2
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhh-CHHHHHHhHhhhccccccc-CHhHHHHHHHHHHHhcCCC------CHHHHHHH
Q 045023 260 LGRFLSNRDNNIRYVALNMLMKAITV-DAQAVQRHRATILECVKDL-DASIRKRALELVYLLVNES------NVKPLTKE 331 (812)
Q Consensus 260 L~~fL~~~d~niryvaL~~L~~l~~~-~p~~v~~h~~~i~~cL~d~-D~sIr~~aLell~~l~n~~------Nv~~Iv~e 331 (812)
+...+.+++.++|-.|-..+..++.. .|.++..-...++.+|.+. .=..|.-||+++-.|+... ...+|++.
T Consensus 100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPV 179 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcc
Confidence 33444566667777766666666543 3555555556666666544 2456677777777776542 23334444
Q ss_pred HHHHhhhcCHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHhhcCccchHHHHHHHHHHHHh---CCCcHHHHHH---
Q 045023 332 LIDYLEISDQEFKGDLTAKICSMVEKFS-PDKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISN---ASDLHGYTVR--- 404 (812)
Q Consensus 332 Ll~yl~~~d~~~~~~li~~I~~la~k~~-~~~~w~vd~ll~lL~~~g~~v~~e~i~~i~~li~~---~p~l~~~~v~--- 404 (812)
+.+.+.+..++++......+..+|.-.. .|-+-++..|++.+..-.. ..|++ +.+.. ..+...-++.
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~----~~l~~~tfv~~v~~~~l~~~~ 253 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETV----HLLGATTFVAEVTPATLSIMV 253 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHH----HHHTTCCCCSCCCHHHHHHHH
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHH----HHhhcCeeEeeecchhHHHHH
Confidence 4444455567777777777777765443 4555677777776665422 23333 23322 2233333333
Q ss_pred -HHHHHHhhccchHHHHHHHHHhhhhcccccccC
Q 045023 405 -ALYRAVQTSIEQESLVRVAIWCIGEYGDMLVNN 437 (812)
Q Consensus 405 -~L~~~l~~~~~~~~l~~~~~WiiGEY~~~l~~~ 437 (812)
-|.+.|.+ ..-..++-++-+++..+.++.++
T Consensus 254 p~l~r~l~~--~~~~~~r~~~~~~~n~~~lv~~~ 285 (986)
T 2iw3_A 254 PLLSRGLNE--RETGIKRKSAVIIDNMCKLVEDP 285 (986)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHhhhcc--CcchhheeeEEEEcchhhhcCCH
Confidence 33344432 23345577777888888776543
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.83 E-value=88 Score=30.89 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhc------------cCchhhHHHHHHHHHHhcc-CCCcc
Q 045023 89 YLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGN------------ICSAEMARDLAPEVERLLQ-FRDPN 155 (812)
Q Consensus 89 YL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~------------I~~~e~~~~l~~~V~~ll~-~~~py 155 (812)
.+.+.-+...+++-.--++-.|+|=|+|+|+.++-+||..|-. |++.++.+. +.+++. ..++-
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~----l~~l~~~~~~~~ 101 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEM----FSSFLESTPHEN 101 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHH----HHHHHHHCSCHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHH----HHHHhcCCCcHH
Confidence 3555555666666677788899999999999999999977754 344444444 444443 34566
Q ss_pred eeccC
Q 045023 156 IRKKP 160 (812)
Q Consensus 156 VRKkA 160 (812)
||+|+
T Consensus 102 Vk~ki 106 (220)
T 1dvp_A 102 VRQKM 106 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.49 E-value=81 Score=31.39 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHhhcCCCCHhHHHHHHHHHhc------------cCchhhHHHHHHHHHHhcc-CCC
Q 045023 87 IGYLGLMLLLDERQEVLMLVTNSLKQDLNHTNQYIVGLALCALGN------------ICSAEMARDLAPEVERLLQ-FRD 153 (812)
Q Consensus 87 lgYL~~~~ll~~~~el~~L~~Nsl~kDL~s~n~~i~~lAL~~Ls~------------I~~~e~~~~l~~~V~~ll~-~~~ 153 (812)
-+.+.+.-+.+.+++-.--++-.|+|=|+|+|+.++-+||..|-. |++.++.+.| .++++ ..+
T Consensus 27 ~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l----~~l~~~~~~ 102 (226)
T 3zyq_A 27 ESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL----KDLLKRQVE 102 (226)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH----HHHHHHCCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH----HHHhccCCC
Confidence 344555555666566677788899999999999999999987754 3555555444 44443 355
Q ss_pred cceeccC
Q 045023 154 PNIRKKP 160 (812)
Q Consensus 154 pyVRKkA 160 (812)
+-||+|+
T Consensus 103 ~~Vk~ki 109 (226)
T 3zyq_A 103 VNVRNKI 109 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6788887
No 145
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=27.17 E-value=4.4e+02 Score=31.20 Aligned_cols=76 Identities=12% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHhhcCccchHHHHHH
Q 045023 311 RALELVYLLVNE--SNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFSPDKIWYIDQMLKVLSEAGNFVKDEVWHA 387 (812)
Q Consensus 311 ~aLell~~l~n~--~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~~~~~w~vd~ll~lL~~~g~~v~~e~i~~ 387 (812)
+-=.++.++... .|++.-+.+|...+....+.+|..+++.+..++...|.. .-+.-+++.++......+..+++..
T Consensus 11 ~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~K-t~vyAaLVgllN~k~pe~G~~lv~~ 88 (771)
T 1h2v_C 11 HLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEK-LTIYTTLVGLLNARNYNFGGEFVEA 88 (771)
T ss_dssp HHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHcCChhHHHHHHHH
Confidence 333456666553 567788888888887666789999999998888665544 4567888888887765455554433
No 146
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.12 E-value=1.9e+02 Score=26.81 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=49.8
Q ss_pred CcchHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCHHHHHHhH------hh-hccccc
Q 045023 231 AGNAILYECVETIMSIEDNGGLRVLAINILGRFLSN-RDNNIRYVALNMLMKAITVDAQAVQRHR------AT-ILECVK 302 (812)
Q Consensus 231 ~~~aVl~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~-~d~niryvaL~~L~~l~~~~p~~v~~h~------~~-i~~cL~ 302 (812)
..-+..+|.+-.|-. ++.--+-|+..|.+-|.. +++++.+.||..|-.++......|.... .. +...+.
T Consensus 32 ~Dw~~ileicD~In~---~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~ 108 (152)
T 3rru_A 32 EDWGQFMHICDIINT---TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLN 108 (152)
T ss_dssp CCHHHHHHHHHHHHH---STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGS
T ss_pred ccHHHHHHHHHHHhC---CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhc
Confidence 344555665555433 222234577777777764 5677889999988888876544443322 12 223333
Q ss_pred c---cCHhHHHHHHHHHHHhc
Q 045023 303 D---LDASIRKRALELVYLLV 320 (812)
Q Consensus 303 d---~D~sIr~~aLell~~l~ 320 (812)
+ .+..+|.+.|+++..-.
T Consensus 109 ~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 109 PRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp GGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 2 23457777777776544
No 147
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=25.14 E-value=59 Score=21.30 Aligned_cols=14 Identities=50% Similarity=0.672 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 045023 25 EERAVVRKECAAIR 38 (812)
Q Consensus 25 eEr~~i~~E~a~Ir 38 (812)
+|-+.|+||++.|+
T Consensus 9 qelaaikkelaaik 22 (34)
T 3r4h_A 9 QELAAIKKELAAIK 22 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554444
No 148
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=24.43 E-value=6.3e+02 Score=26.42 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=50.2
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHH
Q 045023 236 LYECVETIMSI--EDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDLDASIRKRAL 313 (812)
Q Consensus 236 l~e~v~~i~~i--~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aL 313 (812)
+|||...++.= +.-|+.|......|.... ..++..+....|+.++-....|+-..++++..|....|
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~-----------~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL 188 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVN-----------SHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGL 188 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHH-----------HHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHH-----------HHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 56777666653 345666765555543332 23344455566777777777888889999999999999
Q ss_pred HHHHHhcC
Q 045023 314 ELVYLLVN 321 (812)
Q Consensus 314 ell~~l~n 321 (812)
++++.+.+
T Consensus 189 ~il~~ll~ 196 (321)
T 1w9c_A 189 QILFTLLQ 196 (321)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876654
No 149
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=24.23 E-value=6.7e+02 Score=26.71 Aligned_cols=67 Identities=6% Similarity=0.026 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHHHHhhCH--HHHHHh---HhhhcccccccCHhHHHHHHHHHHHhcCCC---C-HHHHHHHHHHH
Q 045023 269 NNIRYVALNMLMKAITVDA--QAVQRH---RATILECVKDLDASIRKRALELVYLLVNES---N-VKPLTKELIDY 335 (812)
Q Consensus 269 ~niryvaL~~L~~l~~~~p--~~v~~h---~~~i~~cL~d~D~sIr~~aLell~~l~n~~---N-v~~Iv~eLl~y 335 (812)
....|..+.+|..++.... +.+-.| ...|..||....+.+|+.+++||.++|.-. . ...|++-|-.|
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~ 147 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 4556666666666654322 112222 355677888888999999999999998754 2 55555555443
No 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=23.94 E-value=6.1e+02 Score=30.87 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=88.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHHhhCHHHHHHhHhhhc----ccccccCHhHHHHHH
Q 045023 239 CVETIMSIEDNGGLRVLAINILGRFLSNR-DNNIRYVALNMLMKAITVDAQAVQRHRATIL----ECVKDLDASIRKRAL 313 (812)
Q Consensus 239 ~v~~i~~i~~~~~L~~l~i~~L~~fL~~~-d~niryvaL~~L~~l~~~~p~~v~~h~~~i~----~cL~d~D~sIr~~aL 313 (812)
++.+|+..-+...+ ......|...|.+. .=..|.-||..|..++...|+.+......|+ .|..|.-..+++.|.
T Consensus 118 ~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~ 196 (986)
T 2iw3_A 118 TLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAAT 196 (986)
T ss_dssp HHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHH
Confidence 33444443333333 44456666666443 4689999999999999888988877766654 677788899999777
Q ss_pred HHHHHh---cCCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHhhc
Q 045023 314 ELVYLL---VNESNVKPLTKELIDYLEISDQEFKGDLTAKICSMVEKFS-PDKIWYIDQMLKVLSEA 376 (812)
Q Consensus 314 ell~~l---~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li~~I~~la~k~~-~~~~w~vd~ll~lL~~~ 376 (812)
+.+.++ +...-+...++.|++.+.+. +-..++|.+++. ..|- .-..=-+..|..+|..+
T Consensus 197 ~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l~~--~tfv~~v~~~~l~~~~p~l~r~ 259 (986)
T 2iw3_A 197 AAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLLGA--TTFVAEVTPATLSIMVPLLSRG 259 (986)
T ss_dssp HHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHHTT--CCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHhhc--CeeEeeecchhHHHHHHHHHhh
Confidence 666555 56677888999999999765 337777777643 3453 22333455666666554
No 151
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=22.23 E-value=3.3e+02 Score=26.53 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred hcccccccCHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcCHHHHHHHH-HHHHHHHhhhCCchhHHHHHH
Q 045023 297 ILECVKDLDASIRKRALELVYLLVNESNVKPLTKELIDYLEISDQEFKGDLT-AKICSMVEKFSPDKIWYIDQM 369 (812)
Q Consensus 297 i~~cL~d~D~sIr~~aLell~~l~n~~Nv~~Iv~eLl~yl~~~d~~~~~~li-~~I~~la~k~~~~~~w~vd~l 369 (812)
+.....+++...||-|+..++.-.++.+...+.+-+...+.+. ..|.+..| -.+..++. .+.+|.++.+
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k---~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTE-EFFIQKAIGWSLRQYSK---TNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTT---TCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHh---hCHHHHHHHH
Confidence 4556778888888888887776666666655543222233333 33333333 33333333 2444555444
No 152
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=21.61 E-value=7.2e+02 Score=30.26 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=72.8
Q ss_pred HHHHHHhhCHHHHHHhHhhhcccccccCHhHHHHHHHHHHHhcCC----CCHHHHHHHH--------------HHHhhhc
Q 045023 278 MLMKAITVDAQAVQRHRATILECVKDLDASIRKRALELVYLLVNE----SNVKPLTKEL--------------IDYLEIS 339 (812)
Q Consensus 278 ~L~~l~~~~p~~v~~h~~~i~~cL~d~D~sIr~~aLell~~l~n~----~Nv~~Iv~eL--------------l~yl~~~ 339 (812)
.+.+.+..+...+.+....++.|...+.++|.+.+-.+...+.+. .++..+-.++ .+..+..
T Consensus 202 ~~~~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~ 281 (997)
T 1vsy_5 202 KIHRKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLA 281 (997)
T ss_dssp HHHHHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHH
T ss_pred hhhhHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 344667788899999999999999888889988877776554431 1111111111 1111111
Q ss_pred C-------HHHHHHHHHHHHHHHhhhCCchh--HHHHHH-----HHHHhhcCccchHHHHHHHHH-HHHhCCCcHHHHHH
Q 045023 340 D-------QEFKGDLTAKICSMVEKFSPDKI--WYIDQM-----LKVLSEAGNFVKDEVWHALIV-VISNASDLHGYTVR 404 (812)
Q Consensus 340 d-------~~~~~~li~~I~~la~k~~~~~~--w~vd~l-----l~lL~~~g~~v~~e~i~~i~~-li~~~p~l~~~~v~ 404 (812)
. .+....+...+..++ ..+.. |....+ +.++..-....+.+++..+.+ ++..+|.++..++.
T Consensus 282 ~~~~r~~~~~~~~~L~~~l~~~~---~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~ 358 (997)
T 1vsy_5 282 KKKKREYYLSLLVDLQDKLLDKL---DNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVK 358 (997)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH---HSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 1 112223333333444 34566 765555 333333334567788877766 55668888887765
Q ss_pred HHHHHH
Q 045023 405 ALYRAV 410 (812)
Q Consensus 405 ~L~~~l 410 (812)
-+...+
T Consensus 359 ~l~~il 364 (997)
T 1vsy_5 359 SLLSTC 364 (997)
T ss_dssp HHTHHH
T ss_pred HHHHHH
Confidence 554433
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=21.38 E-value=5.1e+02 Score=24.28 Aligned_cols=22 Identities=9% Similarity=0.005 Sum_probs=15.4
Q ss_pred ccccccCHhHHHHHHHHHHHhc
Q 045023 299 ECVKDLDASIRKRALELVYLLV 320 (812)
Q Consensus 299 ~cL~d~D~sIr~~aLell~~l~ 320 (812)
.-|++.++.+..+||.||=.++
T Consensus 57 krl~~~n~~vql~AL~LLd~~v 78 (171)
T 1juq_A 57 HKIQSPQEWEALQALTVLEACM 78 (171)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 3455677888888888876554
No 154
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.06 E-value=1.4e+02 Score=34.26 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC---HHHHHHhHhhhccccccc---CHhHHH
Q 045023 237 YECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVD---AQAVQRHRATILECVKDL---DASIRK 310 (812)
Q Consensus 237 ~e~v~~i~~i~~~~~L~~l~i~~L~~fL~~~d~niryvaL~~L~~l~~~~---p~~v~~h~~~i~~cL~d~---D~sIr~ 310 (812)
+++.-.++...+...+|..+...++.++..-+..-||-.|+.|..-.... --++...+..|..++++. +.....
T Consensus 367 ~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e~R~~iL~~LL~~~~~~~v~~~lI~~~KdeI~~al~~~~~~~~F~~~ 446 (596)
T 4f52_E 367 PQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDMSLKRTRNNKWFTGP 446 (596)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCC----CTTTSH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhcCCCCCccccH
Confidence 44444455556777788888888888886666778888888886654322 134566666777776632 233333
Q ss_pred HHHHHHHH
Q 045023 311 RALELVYL 318 (812)
Q Consensus 311 ~aLell~~ 318 (812)
+.++++..
T Consensus 447 ~l~~ll~~ 454 (596)
T 4f52_E 447 QLISLLDL 454 (596)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
Done!