BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045024
(1173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 55/110 (50%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A++ LG + +A++ Q A+ P + W LG AY++ G + AI+ Y +A+
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
ELD + GN + G+++K +E +Q AL++ N A L +
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
S W+ LG AY++ G + AI+ Y +A+ELD + GN + G+++K +E +Q
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 219 LALKISSENVSAHY 232
AL++ N A Y
Sbjct: 68 KALELDPNNAKAWY 81
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
+ +LE +P++ S +LG ++ + +KA E++ A +L+P NA A+ G+ Y +
Sbjct: 33 QKALELDPNNASAWYNLGNAYYKQGDY-QKAIEYYQKALELDPNNAKAWYRRGNAYYKQG 91
Query: 72 IDTQRAIKCYQRAVSLSPDDSVSGEAL 98
D Q+AI+ YQ+A+ L P+++ + + L
Sbjct: 92 -DYQKAIEDYQKALELDPNNAKAKQNL 117
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 36/140 (25%)
Query: 52 LNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL 110
++P N A A++ LG+ Y + D Q+AI+ YQ+A+ L P+++
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQG-DYQKAIEYYQKALELDPNNAS----------------- 44
Query: 111 EVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
A+ LG + +A++ Q A+ P + W G AY
Sbjct: 45 -----------------AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAY 87
Query: 171 HRLGMFSAAIKSYGRAIELD 190
++ G + AI+ Y +A+ELD
Sbjct: 88 YKQGDYQKAIEDYQKALELD 107
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS 92
+KA E++ A +L+P NA A+ LG+ Y + D Q+AI+ YQ+A+ L P+++
Sbjct: 26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQG-DYQKAIEYYQKALELDPNNA 77
Score = 37.0 bits (84), Expect = 0.069, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 357 SLNEAY---GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IRG 410
+L AY G YQ A +K AL L+ +N W LG G Q A+ +
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQK----ALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
L+LD + A AW G Y + G+ + A + + A +DP+ A
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 384 GDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQA 440
G++ + W LG G Q A+ + L+LD + A AW ++G Y + G+ + A +
Sbjct: 6 GNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 441 FDSARSIDPSLALPW 455
+ A +DP+ A W
Sbjct: 66 YQKALELDPNNAKAW 80
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 54/110 (49%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ LG + EA++ Q A+ P S W LG AY++ G + AI+ Y +A+
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
ELD S GN + G++ + +E +Q AL++ + A Y L +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175
++A + PR+ A+ LG + EA++ Q A+ P S W LG AY++ G
Sbjct: 25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
+ AI+ Y +A+ELD S GN + G++ + +E +Q AL++
Sbjct: 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCR 116
A A+ LG+ Y + D AI+ YQ+A+ L P + + L G + +
Sbjct: 1 AEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
Query: 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176
+A + PR+ A+ LG + EA++ Q A+ P S W LG AY++ G +
Sbjct: 60 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 119
Query: 177 SAAIKSYGRAIELDDTS 193
AI+ Y +A+ELD S
Sbjct: 120 DEAIEYYQKALELDPRS 136
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 356 YSLNEAY---GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IR 409
Y+L AY G Y A +K AL L+ + + W LG G A+ +
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQK----ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLV 469
L+LD A+AW ++G Y + G+ A + + A +DP A W + + +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL-GNAYYKQGDY 119
Query: 470 DDAFESCLRAVQILP 484
D+A E +A+++ P
Sbjct: 120 DEAIEYYQKALELDP 134
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
A+AW ++G Y + G+ A + + A +DP A W + + + D+A E
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL-GNAYYKQGDYDEAIEYYQ 59
Query: 478 RAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536
+A+++ P AE L G + + Q+A++ P E+ G +
Sbjct: 60 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEY--YQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 537 DYQAAVVSYRLA 548
DY A+ Y+ A
Sbjct: 118 DYDEAIEYYQKA 129
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ LG + EA++ Q A+ P + W LG AY++ G + AI+ Y +A+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
ELD + GN + G++ + +E +Q AL++ N A L +
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
S W LG AY++ G + AI+ Y +A+ELD + GN + G++ + +E +Q
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 219 LALKISSENVSAHYGLASG 237
AL++ N A Y L +
Sbjct: 68 KALELDPNNAEAWYNLGNA 86
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 36/140 (25%)
Query: 52 LNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL 110
++P N A A+ LG+ Y + D AI+ YQ+A+ L P+++
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAE----------------- 44
Query: 111 EVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
A+ LG + EA++ Q A+ P + W LG AY
Sbjct: 45 -----------------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87
Query: 171 HRLGMFSAAIKSYGRAIELD 190
++ G + AI+ Y +A+ELD
Sbjct: 88 YKQGDYDEAIEYYQKALELD 107
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
+ +LE +P++ +LG ++ + E A E++ A +L+P NA A+ LG+ Y +
Sbjct: 33 QKALELDPNNAEAWYNLGNAYYKQGDYDE-AIEYYQKALELDPNNAEAWYNLGNAYYKQG 91
Query: 72 IDTQRAIKCYQRAVSLSPDDSVSGEAL 98
D AI+ YQ+A+ L P+++ + + L
Sbjct: 92 -DYDEAIEYYQKALELDPNNAEAKQNL 117
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 356 YSLNEAY---GHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL---IR 409
Y+L AY G Y A +K AL L+ +N + W LG G A+ +
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQK----ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA 452
L+LD + A+AW ++G Y + G+ A + + A +DP+ A
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 384 GDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQA 440
G++ + W LG G A+ + L+LD + A+AW ++G Y + G+ A +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 441 FDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484
+ A +DP+ A W + + + D+A E +A+++ P
Sbjct: 66 YQKALELDPNNAEAWYNL-GNAYYKQGDYDEAIEYYQKALELDP 108
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS 92
++A E++ A +L+P NA A+ LG+ Y + D AI+ YQ+A+ L P+++
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNA 77
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ LG + EA++ Q A+ YP + W LG AY++ G + AI+ Y +A+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237
EL + GN + G++ + +E +Q AL++ N A L +
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
S W LG AY++ G + AI+ Y +A+EL + GN + G++ + +E +Q
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 219 LALKISSENVSAHYGLASG 237
AL++ N A Y L +
Sbjct: 68 KALELYPNNAEAWYNLGNA 86
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 36/139 (25%)
Query: 52 LNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL 110
++P N A A+ LG+ Y + D AI+ YQ+A+ L P+++
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQG-DYDEAIEYYQKALELYPNNAE----------------- 44
Query: 111 EVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170
A+ LG + EA++ Q A+ YP + W LG AY
Sbjct: 45 -----------------AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAY 87
Query: 171 HRLGMFSAAIKSYGRAIEL 189
++ G + AI+ Y +A+EL
Sbjct: 88 YKQGDYDEAIEYYQKALEL 106
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS 71
+ +LE P++ +LG ++ + E A E++ A +L P NA A+ LG+ Y +
Sbjct: 33 QKALELYPNNAEAWYNLGNAYYKQGDYDE-AIEYYQKALELYPNNAEAWYNLGNAYYKQG 91
Query: 72 IDTQRAIKCYQRAVSLSPDDSVSGEAL 98
D AI+ YQ+A+ L P+++ + + L
Sbjct: 92 -DYDEAIEYYQKALELYPNNAEAKQNL 117
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 35/135 (25%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
++A E++ A +L P NA A+ LG+ Y + D AI+ YQ+A+ L P+++
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELYPNNAE------ 78
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
A+ LG + EA++ Q A+ YP +
Sbjct: 79 ----------------------------AWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
Query: 160 PHLWEALGLAYHRLG 174
+ LG A + G
Sbjct: 111 AEAKQNLGNAKQKQG 125
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 6/208 (2%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99
+++A +A K NP A A+ LG+ Y Q AI+ Y+ A+ L PD L
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLA 108
Query: 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159
L G V A +P + LG L + EA AI P
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
Query: 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219
W LG ++ G AI + +A+ LD + + GN+ F + V +
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 220 ALKISSENVSAHYGLA-----SGLLGLA 242
AL +S + H LA GL+ LA
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 75/197 (38%), Gaps = 35/197 (17%)
Query: 42 AAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101
A HF A L+P A+ LG+ I RA+ Y RA+SLSP+ +V
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVV------- 239
Query: 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161
HG + C + G + L A+ + + AI P P
Sbjct: 240 --HGN------LAC------------VYYEQGLIDL-------AIDTYRRAIELQPHFPD 272
Query: 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221
+ L A G + A Y A+ L T L NI GN + V ++ AL
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 222 KISSENVSAHYGLASGL 238
++ E +AH LAS L
Sbjct: 333 EVFPEFAAAHSNLASVL 349
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 408 IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASES 467
++ ++ + A AW+++G ++ GE LA F+ A ++DP+ + + +V
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-GNVLKEAR 217
Query: 468 LVDDAFESCLRAVQILP----------LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQR 517
+ D A + LRA+ + P ++ GL LA ++AI+
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA-----------IDTYRRAIEL 266
Query: 518 GPHYPESH-NL------YGLVCEARSDYQAAV 542
PH+P+++ NL G V EA Y A+
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
S W LG AY++ G + AI+ Y +A+ELD S GN + G++ + +E +Q
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 219 LALKIS 224
AL++
Sbjct: 62 KALELD 67
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ LG + EA++ Q A+ P S W LG AY++ G + AI+ Y +A+
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 188 ELDDTS 193
ELD S
Sbjct: 65 ELDPRS 70
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89
++A E++ A +L+P++A A+ LG+ Y + D AI+ YQ+A+ L P
Sbjct: 20 DEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDP 68
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
A+AW ++G Y + G+ A + + A +DP A W + + + D+A E
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL-GNAYYKQGDYDEAIEYYQ 61
Query: 478 RAVQILP 484
+A+++ P
Sbjct: 62 KALELDP 68
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218
S W LG AY++ G + AI+ Y +A+ELD + GN + G++ + +E +Q
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 219 LALKISSENVSAHYGLASG 237
AL++ N A L +
Sbjct: 68 KALELDPNNAEAKQNLGNA 86
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187
A+ LG + EA++ Q A+ P + W LG AY++ G + AI+ Y +A+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 188 ELD 190
ELD
Sbjct: 71 ELD 73
Score = 36.6 bits (83), Expect = 0.083, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98
++A E++ A +L+P NA A+ LG+ Y + D AI+ YQ+A+ L P+++ + + L
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG-DYDEAIEYYQKALELDPNNAEAKQNL 83
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 384 GDNCQFWVTLGCLSNYNGLKQHAL---IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQA 440
G++ + W LG G A+ + L+LD + A+AW ++G Y + G+ A +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 441 FDSARSIDPSLA 452
+ A +DP+ A
Sbjct: 66 YQKALELDPNNA 77
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCL 477
A+AW ++G Y + G+ A + + A +DP+ A W + + + D+A E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL-GNAYYKQGDYDEAIEYYQ 67
Query: 478 RAVQILP 484
+A+++ P
Sbjct: 68 KALELDP 74
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L +LE NP+D LH LG+ L+ S + + AA + A +L P +A + LG
Sbjct: 161 LHAALEMNPNDAQLHASLGV-LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219
Query: 71 SIDTQRAIKCYQRAVSLSP-------DDSVSGEALCELLEHGGKESLEVVVCR------- 116
+ Q A+ Y RA+ ++P + +VS + + + K+ + + +
Sbjct: 220 N-RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPT 277
Query: 117 -EASDKSPRAFWAFRRL 132
EAS ++ R+ W F R+
Sbjct: 278 GEASREATRSMWDFFRM 294
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF 70
L +LE NP+D LH LG+ L+ S + + AA + A +L P +A + LG
Sbjct: 161 LHAALEMNPNDAQLHASLGV-LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219
Query: 71 SIDTQRAIKCYQRAVSLSP 89
+ Q A+ Y RA+ ++P
Sbjct: 220 N-RPQEALDAYNRALDINP 237
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135
R + +R+++ +PD+ L K L V + + ++ +P F RLG
Sbjct: 60 RGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVA 119
Query: 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195
+ ++ EA+ S + A+ P + A+ +Y ++G A+ + +A ELD+ S
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERSAV 179
Query: 196 PL 197
L
Sbjct: 180 EL 181
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 37/229 (16%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT---QRAIKCY-----QRAVSLSPDD 91
+KA F A ++ P N F +G+ T + +D + ++K + ++AV+L+PD+
Sbjct: 157 QKAKAAFEKALEVEPDNP-EFN-IGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDN 214
Query: 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQH 151
S L L+ E+ E D+ + R W++A++ L+
Sbjct: 215 SYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKK 274
Query: 152 AIRGYPTSPHLWEALGLAYH------------------RLG---MFSAAIKSYGRAIELD 190
A+ PTS L +GL Y +L + S+AI + A+E D
Sbjct: 275 ALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLKVDELISSAIFHFKAAMERD 334
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS------ENVSAHYG 233
F + N++ G + + F+ AL++ + + HYG
Sbjct: 335 SMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYG 383
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 66 YYTRFSID-TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR 124
YY D Q+ I+ Y V+ + S E ++L G++SL + + A D+
Sbjct: 47 YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILXKKGQDSLAIQQYQAAVDRDTT 106
Query: 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184
+ ++G + + A+Q + IR T P ++ LG AY+ + A S+
Sbjct: 107 RLDXYGQIGSYFYNKGNFPLAIQYXEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 185 RAIEL 189
+ +EL
Sbjct: 167 KVLEL 171
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%)
Query: 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135
R + +R+++ +PD+ L K L V + + ++ +P F RLG
Sbjct: 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
+ ++ EA+ S + A+ P + A+ +Y ++G A+ + +A ELD+
Sbjct: 120 LKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL--DDTSIFPLLESGNIFLMLGNFRK 212
G P L LG+ +H G F+ AI ++ A+ + +D S++ L G +
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL--GATLANGDRSEE 265
Query: 213 GVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256
VE + AL+I + + Y L G++ CINLGA+R S
Sbjct: 266 AVEAYTRALEIQPGFIRSRYNL-----GIS--CINLGAYREAVS 302
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 1 DDEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF 60
++ + A ++ L+ LE P++ + L + + N+ ++ A E K NP+ +
Sbjct: 112 NENEQAAIVALQRCLELQPNNLKALMALAVS-YTNTSHQQDACEALKNWIKQNPK----Y 166
Query: 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD 120
+YL + ++ R +S SP DS E + EL ++ +++ +
Sbjct: 167 KYL--------VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218
Query: 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180
LG L +++ A+ + A+ P LW LG A+
Sbjct: 219 -----------LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 181 KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223
++Y RA+E+ I G + LG +R+ V F AL +
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 36.6 bits (83), Expect = 0.087, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%)
Query: 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135
R + +R+++ +PD+ L K L V + + ++ +P F RLG
Sbjct: 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
+ ++ EA+ S + A+ P + A+ +Y ++G A+ + +A ELD+
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 36.6 bits (83), Expect = 0.087, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%)
Query: 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135
R + +R+++ +PD+ L K L V + + ++ +P F RLG
Sbjct: 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119
Query: 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
+ ++ EA+ S + A+ P + A+ +Y ++G A+ + +A ELD+
Sbjct: 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + A++ AI P++ + LAY R + A+ RAIELD I
Sbjct: 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
+ LG FR + ++ +K+ + A
Sbjct: 80 RAASNMALGKFRAALRDYETVVKVKPHDKDA 110
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + A++ AI P++ + LAY R + A+ RAIELD I
Sbjct: 35 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYR 94
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
+ LG FR + ++ +K+ + A
Sbjct: 95 RAASNMALGKFRAALRDYETVVKVKPHDKDA 125
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
L + + +L FSAAI+S +A+ELD + L G L + +F FQ L++
Sbjct: 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYP 261
Query: 226 ENVSAHYGLA 235
N +A LA
Sbjct: 262 NNKAAKTQLA 271
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K + A++ AI P++ + LAY R + A+ RAIELD I
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86
Query: 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSA 230
+ LG FR + ++ +K+ + A
Sbjct: 87 RAASNMALGKFRAALRDYETVVKVKPHDKDA 117
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225
L + + +L FSAAI+S +A+ELD + L G L + +F FQ L++
Sbjct: 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261
Query: 226 ENVSAHYGLA 235
N +A LA
Sbjct: 262 NNKAAKTQLA 271
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238
A+ Y +A+ELD ++ +GN++++ +++ + F+ AL+ EN Y L + L
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
Query: 239 LGLAKQCINLGAFRWGASLLED 260
+ L + + L + L E+
Sbjct: 136 VKLEQPKLALPYLQRAVELNEN 157
Score = 33.1 bits (74), Expect = 0.94, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 145 AVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204
+V L+ A+ Y + L + AY+ G + Y A ++ + ++ +E+G++F
Sbjct: 69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Query: 205 LMLGNFRKGVEQFQLAL 221
MLG +EQ +LAL
Sbjct: 129 YMLGTVLVKLEQPKLAL 145
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 37/229 (16%)
Query: 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT---QRAIKCY-----QRAVSLSPDD 91
+KA F A ++ P N F +G+ T + +D + ++K + ++AV+L+PD+
Sbjct: 157 QKAKAAFEKALEVEPDNP-EFN-IGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDN 214
Query: 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQH 151
S L L+ E+ E D+ + R W++A++ L+
Sbjct: 215 SYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQPYVLRYAAKFYRRKNSWNKALELLKK 274
Query: 152 AIRGYPTSPHLWEALGLAYH------------------RLG---MFSAAIKSYGRAIELD 190
A+ PTS L GL Y +L + S+AI + A E D
Sbjct: 275 ALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLKVDELISSAIFHFKAAXERD 334
Query: 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS------ENVSAHYG 233
F + N + G + + F+ AL++ + + HYG
Sbjct: 335 SXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYG 383
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID 73
+LE P+ + H +L L + + +E A H+ A +++P A A+ +G+ D
Sbjct: 35 ALEVFPEFAAAHSNLASVLQQQGKLQE-ALMHYKEAIRISPTFADAYSNMGNTLKEMQ-D 92
Query: 74 TQRAIKCYQRAVSLSP 89
Q A++CY RA+ ++P
Sbjct: 93 VQGALQCYTRAIQINP 108
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%)
Query: 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS 148
P + S L + G V + R+A + P A L + K EA+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 149 LQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208
+ AIR PT + +G + A++ Y RAI+++ +I G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 209 NFRKGVEQFQLALKISSENVSAHYGLA 235
N + + ++ ALK+ + A+ LA
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLA 152
>pdb|3CUR|H Chain H, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|I Chain I, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|J Chain J, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
Length = 549
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 258 LEDACKVA-EANTRLAGNMSCIWKLHGD--IQLTYAKCFPWAEERQSLEFD---VETFSA 311
++DA KV+ AN R+ N+ + D + + W + +L+ D +A
Sbjct: 87 VDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHMHALDWVDVTAALKADPNKAAKLAA 146
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD-----------IAITSDLIYSLNE 360
SI + A+ + +A ++ Q I+T+ + DLI
Sbjct: 147 SIAPARPGNSAKALKAVQDKLKA-FVESGQLGIFTNAYFLGGHKAYYLPPEVDLI----- 200
Query: 361 AYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A HY A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 201 ATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 258 LEDACKVA-EANTRLAGNMSCIWKLHGD--IQLTYAKCFPWAEERQSLEFD---VETFSA 311
++DA KV+ AN R+ N+ + D + + W + +L+ D +A
Sbjct: 87 VDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAA 146
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIA-ITSDLIYSLNE-----AYGHY 365
SI + +T A+ + +A ++ Q I+T+ + Y L A HY
Sbjct: 147 SIDTARTGNSEKALKAVQDKLKA-FVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHY 205
Query: 366 QSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 206 LEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|3H3X|Q Chain Q, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|R Chain R, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|S Chain S, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 549
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 258 LEDACKVA-EANTRLAGNMSCIWKLHGD--IQLTYAKCFPWAEERQSLEFD---VETFSA 311
++DA KV+ AN R+ N+ + D + + W + +L+ D +A
Sbjct: 87 VDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAA 146
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD-----------IAITSDLIYSLNE 360
SI + A+ + +A ++ Q I+T+ + DLI
Sbjct: 147 SIAPARPGNSAKALKAVQDKLKA-FVESGQLGIFTNAYFLGGHKAYYLPPEVDLI----- 200
Query: 361 AYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A HY A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 201 ATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|3CUS|Q Chain Q, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|R Chain R, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|S Chain S, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
Length = 549
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 258 LEDACKVA-EANTRLAGNMSCIWKLHGD--IQLTYAKCFPWAEERQSLEFD---VETFSA 311
++DA KV+ AN R+ N+ + D + + W + +L+ D +A
Sbjct: 87 VDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHFHALDWVDVTAALKADPNKAAKLAA 146
Query: 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD-----------IAITSDLIYSLNE 360
SI + A+ + +A ++ Q I+T+ + DLI
Sbjct: 147 SIAPARPGNSAKALKAVQDKLKA-FVESGQLGIFTNAYFLGGHKAYYLPPEVDLI----- 200
Query: 361 AYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A HY A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 201 ATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171
V + R+A D+ R GYL+ +A+ L+ A R P L GL Y
Sbjct: 84 VALYRQAEDRE-------RGKGYLE-------QALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLES--GNIFLMLGNFRKGVEQFQLALKISSENVS 229
LG A S +A+ L+DT P + S ++L +G + + Q+ AL+ + +++
Sbjct: 130 LLGERDKAEASLKQALALEDT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186
Query: 230 AHYGLASGLL 239
AS LL
Sbjct: 187 LRVRYASALL 196
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG L ++ +AV A+ P LW LG A+ +Y RA+EL
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-------------SENVSAHYGLASGL 238
I G + LG R+ VE F AL + SEN+ + LA +
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342
Query: 239 LG 240
LG
Sbjct: 343 LG 344
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231
++ F AA+ YG+AIEL+ + + LGN+ V+ + A+ I
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----A 78
Query: 232 YGLASGLLGLAKQCIN 247
Y A G +GLA +N
Sbjct: 79 YSKAYGRMGLALSSLN 94
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451
AL R + L+ ADA+ +G +Y +GE A +A++ SI P
Sbjct: 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
>pdb|1YRQ|H Chain H, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|I Chain I, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|J Chain J, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|K Chain K, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|M Chain M, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|N Chain N, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 549
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 361 AYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A HY A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 201 ATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|1YQW|Q Chain Q, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|R Chain R, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|S Chain S, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
Length = 549
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 361 AYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNGLKQHALIRGLQL 413
A HY A H+ K A +L G N QF V GC SNY GL + L L L
Sbjct: 201 ATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGC-SNYQGLTKDPLANYLAL 254
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG L ++ +AV A+ P LW LG A+ +Y RA+EL
Sbjct: 160 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 219
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-------------SENVSAHYGLASGL 238
I G + LG R+ VE F AL + SEN+ + LA +
Sbjct: 220 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 279
Query: 239 LG 240
LG
Sbjct: 280 LG 281
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG L ++ +AV A+ P LW LG A+ +Y RA+EL
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-------------SENVSAHYGLASGL 238
I G + LG R+ VE F AL + SEN+ + LA +
Sbjct: 243 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 302
Query: 239 LG 240
LG
Sbjct: 303 LG 304
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG L ++ +AV A+ P LW LG A+ +Y RA+EL
Sbjct: 174 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 233
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-------------SENVSAHYGLASGL 238
I G + LG R+ VE F AL + SEN+ + LA +
Sbjct: 234 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 293
Query: 239 LG 240
LG
Sbjct: 294 LG 295
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 13/122 (10%)
Query: 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191
LG L ++ +AV A+ P LW LG A+ +Y RA+EL
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-------------SENVSAHYGLASGL 238
I G + LG R+ VE F AL + SEN+ + LA +
Sbjct: 243 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 302
Query: 239 LG 240
LG
Sbjct: 303 LG 304
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
F A+K Y +A ELD T++ ++ ++ G++ K E + A+++ EN
Sbjct: 20 FDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGREN 71
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 32 LWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89
L+ ++ + A ++ + ++ A R+LG Y +T +A++CY+R+V L+P
Sbjct: 40 LYXEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEENTDKAVECYRRSVELNP 96
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80
DP H LGL L+E E+ +KA E + + +LNP + + + RA
Sbjct: 64 DPKAHRFLGL-LYELEENTDKAVECYRRSVELNPXQKDLVLKIAELLCKNDVTDGRAKYW 122
Query: 81 YQRAVSLSP 89
+RA L P
Sbjct: 123 VERAAKLFP 131
>pdb|1RW9|A Chain A, Crystal Structure Of The Arthrobacter Aurescens
Chondroitin Ac Lyase
Length = 757
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 444 ARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQ----IGLAKLAKLS 499
AR++DP+ A W G+ A + D + L + + A + G+A +A+ +
Sbjct: 320 ARAMDPATAARWRGLCAGW-----IARDTYRPILNSASVPRTALVKQLEATGVAPVAEAT 374
Query: 500 GHLSSSQVFGAIQQAIQRGPHY 521
GH ++F A+ + + RGP +
Sbjct: 375 GH----KLFPAMDRTMHRGPGW 392
>pdb|1RWA|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWC|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase
pdb|1RWF|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWG|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
pdb|1RWH|A Chain A, Crystal Structure Of Arthrobacter Aurescens Chondroitin Ac
Lyase In Complex With Chondroitin Tetrasaccharide
Length = 757
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 444 ARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQ----IGLAKLAKLS 499
AR++DP+ A W G+ A + D + L + + A + G+A +A+ +
Sbjct: 320 ARAMDPATAARWRGLCAGW-----IARDTYRPILNSASVPRTALVKQLEATGVAPVAEAT 374
Query: 500 GHLSSSQVFGAIQQAIQRGPHY 521
GH ++F A+ + + RGP +
Sbjct: 375 GH----KLFPAMDRTMHRGPGW 392
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188
+ LG L +S+A+ AIR P P ++ LG+ + G F AA +++ +E
Sbjct: 53 YDSLGLRALARNDFSQAL-----AIR--PDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 189 LDDTSIFPLLESG 201
LD T + L G
Sbjct: 106 LDPTYNYAHLNRG 118
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 145 AVQSLQHAIRGYPTSP-HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203
A+Q+L+ ++ P + +G AY +LG + A+ +Y AIEL+ S P L++ +
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--PALQARKM 76
Query: 204 FLMLGNF 210
+ + NF
Sbjct: 77 VMDILNF 83
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 77 AIKCYQRAVSLSPDDSV--SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A CY RA++ +P +V + ALC L +++L CR A + ++ A LG
Sbjct: 28 AAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL--ADCRRALELDGQSVKAHFFLGQ 85
Query: 135 LQLHHKKWSEAVQSLQHA 152
QL + + EA+ +LQ A
Sbjct: 86 CQLEMESYDEAIANLQRA 103
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
F A+K Y +A ELD T++ + ++ G++ K E + A+++ EN
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227
F A+K Y +A ELD T++ + ++ G++ K E + A+++ EN
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 ESKEKAAEHFVIAAKLNPQ--NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89
E+KE I +N Q + A R+LG Y +T +A++CY+R+V L+P
Sbjct: 43 EAKEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEENTDKAVECYRRSVELNP 96
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80
DP H LGL L+E E+ +KA E + + +LNP + + + RA
Sbjct: 64 DPKAHRFLGL-LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122
Query: 81 YQRAVSLSP 89
+RA L P
Sbjct: 123 VERAAKLFP 131
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 37 ESKEKAAEHFVIAAKLNPQ--NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89
E+KE I +N Q + A R+LG Y +T +A++CY+R+V L+P
Sbjct: 43 EAKEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEENTDKAVECYRRSVELNP 96
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80
DP H LGL L+E E+ +KA E + + +LNP + + + RA
Sbjct: 64 DPKAHRFLGL-LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122
Query: 81 YQRAVSLSP 89
+RA L P
Sbjct: 123 LERAAKLFP 131
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 77 AIKCYQRAVSLSPDDSV--SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134
A CY RA++ +P +V + ALC L +++L CR A + ++ A LG
Sbjct: 23 AAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL--ADCRRALELDGQSVKAHFFLGQ 80
Query: 135 LQLHHKKWSEAVQSLQHA 152
QL + + EA+ +LQ A
Sbjct: 81 CQLEMESYDEAIANLQRA 98
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 149 LQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208
LQ +I +PT P+ + L L K + +A++L+ G ++ +L
Sbjct: 262 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 320
Query: 209 NFRKGVEQFQLALKISSENVSAHYGLA 235
+++ E FQ A ++ ENV + LA
Sbjct: 321 DYKNAKEDFQKAQSLNPENVYPYIQLA 347
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K ++EA++ Q+AI P P + + Y G I+ +A+E+ LL
Sbjct: 35 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 94
Query: 200 SGNIFLMLGNFRKGV 214
+ LGNF +
Sbjct: 95 RASANESLGNFTDAM 109
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599
A+V++ L G++ + F+ S+ ++ + +LD + ES+ +DA
Sbjct: 141 ASVIALELLNSGYEFDEGSIIFNRFR--SVISYKTEEKPIFSLDTISSAESMSIYDDIDA 198
Query: 600 EVLQVYA-FSLWQLGKYDLALSMARNLASSVSAMEQSSAAAS 640
+VL+ Y +SL + Y L S ++ ++AM+ +S AS
Sbjct: 199 DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNAS 240
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599
A+V++ L G++ + F+ S+ ++ + +LD + ES+ +DA
Sbjct: 141 ASVIALELLNSGYEFDEGSIIFNRFR--SVISYKTEEKPIFSLDTISSAESMSIYDDIDA 198
Query: 600 EVLQVYA-FSLWQLGKYDLALSMARNLASSVSAMEQSSAAAS 640
+VL+ Y +SL + Y L S ++ ++AM+ +S AS
Sbjct: 199 DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNAS 240
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 149 LQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208
LQ +I +PT P+ + L L K + +A++L+ G ++ +L
Sbjct: 266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324
Query: 209 NFRKGVEQFQLALKISSENVSAHYGLA 235
+++ E FQ A ++ ENV + LA
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLA 351
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199
K ++EA++ Q+AI P P + + Y G I+ +A+E+ LL
Sbjct: 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98
Query: 200 SGNIFLMLGNFRKGV 214
+ LGNF +
Sbjct: 99 RASANESLGNFTDAM 113
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599
A+V++ L G++ + F+ S+ ++ + +LD + ES+ +DA
Sbjct: 166 ASVIALELLNSGYEFDEGSIIFNRFR--SVISYKTEEKPIFSLDTISSAESMSIYDDIDA 223
Query: 600 EVLQVYA-FSLWQLGKYDLALSMARNLASSVSAMEQSSAAAS 640
+VL+ Y +SL + Y L S ++ ++AM+ +S AS
Sbjct: 224 DVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNAS 265
>pdb|1JWE|A Chain A, Nmr Structure Of The N-Terminal Domain Of E. Coli Dnab
Helicase
Length = 114
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 547 LARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599
+A ++ T P+ H I +AR L +G+ +D + ESLERQG LD+
Sbjct: 28 VAERVVADDFYTRPHRH---IFTEMAR-LQESGSPIDLITLAESLERQGQLDS 76
>pdb|1B79|A Chain A, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|B Chain B, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|C Chain C, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|D Chain D, N-Terminal Domain Of Dna Replication Protein Dnab
Length = 119
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 547 LARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599
+A ++ T P+ H I +AR L +G+ +D + ESLERQG LD+
Sbjct: 41 VAERVVADDFYTRPHRH---IFTEMAR-LQESGSPIDLITLAESLERQGQLDS 89
>pdb|1REQ|B Chain B, Methylmalonyl-Coa Mutase
pdb|1REQ|D Chain D, Methylmalonyl-Coa Mutase
pdb|2REQ|B Chain B, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|D Chain D, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|B Chain B, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|6REQ|B Chain B, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|D Chain D, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|B Chain B, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|D Chain D, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|B Chain B, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|D Chain D, Methylmalonyl-Coa Mutase Substrate Complex
pdb|5REQ|B Chain B, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|D Chain D, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|1E1C|B Chain B, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|D Chain D, Methylmalonyl-Coa Mutase H244a Mutant
Length = 637
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 416 SLADAWAHIGKLYGEVGEKKLARQ-AFDSARSI---DPSLAL---PWAGMSADVQASESL 468
+L +AWA IG+++G +K+ ARQ A S R + DP + + A SA V +ES+
Sbjct: 298 ALREAWARIGEVFGVDEDKRGARQNAITSWRELTREDPYVNILRGSIATFSASVGGAESI 357
Query: 469 VDDAFESCLRAVQILPLAEFQIGLAK 494
F L LP +F + +A+
Sbjct: 358 TTLPFTQALG----LPEDDFPLRIAR 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,232,893
Number of Sequences: 62578
Number of extensions: 1210170
Number of successful extensions: 2597
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2399
Number of HSP's gapped (non-prelim): 195
length of query: 1173
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1063
effective length of database: 8,089,757
effective search space: 8599411691
effective search space used: 8599411691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)