Query 045024
Match_columns 1173
No_of_seqs 978 out of 4113
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1127 TPR repeat-containing 100.0 7.3E-69 1.6E-73 620.1 52.2 1094 4-1170 18-1187(1238)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-50 1.5E-54 524.1 88.4 871 20-1031 20-896 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-49 4E-54 520.1 87.9 614 6-661 40-658 (899)
4 KOG4626 O-linked N-acetylgluco 100.0 3E-42 6.5E-47 381.3 38.6 455 25-615 51-506 (966)
5 KOG4626 O-linked N-acetylgluco 100.0 2.8E-41 6.2E-46 373.6 40.3 456 54-649 45-501 (966)
6 PRK11447 cellulose synthase su 100.0 1.1E-36 2.3E-41 402.8 72.4 597 7-660 47-733 (1157)
7 PRK11447 cellulose synthase su 100.0 9.9E-36 2.1E-40 393.7 72.3 658 19-783 25-750 (1157)
8 KOG1127 TPR repeat-containing 100.0 1.6E-36 3.5E-41 352.4 51.0 688 39-755 474-1187(1238)
9 KOG2002 TPR-containing nuclear 100.0 8.7E-35 1.9E-39 340.2 58.0 584 7-651 149-763 (1018)
10 KOG2002 TPR-containing nuclear 100.0 4.8E-34 1E-38 334.0 57.6 612 4-680 110-758 (1018)
11 PRK09782 bacteriophage N4 rece 100.0 8.8E-33 1.9E-37 348.7 68.2 634 24-764 46-760 (987)
12 PRK09782 bacteriophage N4 rece 100.0 7.8E-32 1.7E-36 340.1 68.3 613 2-662 59-735 (987)
13 TIGR00990 3a0801s09 mitochondr 100.0 2.9E-30 6.2E-35 321.7 53.4 446 57-630 127-573 (615)
14 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-28 3.2E-33 306.4 52.6 409 22-598 127-575 (615)
15 PRK15174 Vi polysaccharide exp 100.0 1.4E-25 2.9E-30 278.7 47.3 339 25-485 45-384 (656)
16 PRK15174 Vi polysaccharide exp 100.0 4E-25 8.8E-30 274.5 50.7 307 57-484 42-349 (656)
17 PRK10049 pgaA outer membrane p 100.0 6.7E-25 1.5E-29 278.3 50.4 444 44-632 3-460 (765)
18 PRK10049 pgaA outer membrane p 100.0 7.5E-25 1.6E-29 277.8 50.2 441 8-602 2-464 (765)
19 KOG0495 HAT repeat protein [RN 100.0 4.7E-22 1E-26 223.3 63.7 320 405-787 571-891 (913)
20 KOG0547 Translocase of outer m 99.9 1.2E-24 2.6E-29 237.7 39.1 434 126-629 115-567 (606)
21 PLN03077 Protein ECB2; Provisi 99.9 4.4E-23 9.6E-28 267.3 61.2 653 21-776 50-719 (857)
22 KOG0547 Translocase of outer m 99.9 2.4E-23 5.1E-28 227.6 38.3 406 22-553 115-568 (606)
23 PRK14574 hmsH outer membrane p 99.9 4.3E-22 9.3E-27 247.3 53.6 475 53-633 30-518 (822)
24 PLN03077 Protein ECB2; Provisi 99.9 1.2E-20 2.7E-25 244.6 65.0 592 5-658 68-677 (857)
25 KOG2076 RNA polymerase III tra 99.9 1.1E-20 2.4E-25 221.6 53.6 573 5-592 156-893 (895)
26 KOG2076 RNA polymerase III tra 99.9 2.8E-20 6.1E-25 218.2 54.0 584 22-664 139-892 (895)
27 PRK14574 hmsH outer membrane p 99.9 2.3E-20 4.9E-25 232.0 55.8 471 14-560 26-519 (822)
28 KOG0495 HAT repeat protein [RN 99.9 1.8E-18 3.9E-23 194.8 57.3 540 7-633 334-885 (913)
29 PLN03081 pentatricopeptide (PP 99.9 9.8E-20 2.1E-24 230.6 51.1 457 24-628 89-557 (697)
30 KOG1155 Anaphase-promoting com 99.9 3.4E-20 7.3E-25 202.1 38.3 370 20-549 162-534 (559)
31 KOG1126 DNA-binding cell divis 99.9 1.2E-21 2.6E-26 223.8 27.8 308 23-453 318-626 (638)
32 KOG1173 Anaphase-promoting com 99.9 1.3E-19 2.9E-24 202.6 42.0 489 63-630 22-520 (611)
33 KOG1126 DNA-binding cell divis 99.9 1.5E-21 3.2E-26 223.0 25.6 290 6-343 337-626 (638)
34 KOG1155 Anaphase-promoting com 99.9 3E-18 6.5E-23 187.1 45.7 372 90-597 162-539 (559)
35 PRK11788 tetratricopeptide rep 99.9 8.1E-20 1.8E-24 216.0 36.8 298 59-481 37-346 (389)
36 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.4E-24 214.8 37.7 306 21-451 34-355 (389)
37 KOG2003 TPR repeat-containing 99.9 8.6E-20 1.9E-24 196.6 32.8 479 93-652 202-708 (840)
38 KOG0624 dsRNA-activated protei 99.9 2.9E-19 6.4E-24 187.4 35.0 328 18-457 34-380 (504)
39 KOG0548 Molecular co-chaperone 99.9 4.2E-19 9E-24 198.4 37.9 82 402-484 376-457 (539)
40 PLN03081 pentatricopeptide (PP 99.9 6.7E-18 1.5E-22 213.9 50.0 460 59-667 89-557 (697)
41 PLN03218 maturation of RBCL 1; 99.9 1.6E-16 3.5E-21 203.1 61.2 476 28-625 376-873 (1060)
42 KOG0548 Molecular co-chaperone 99.9 3.5E-18 7.5E-23 191.1 39.6 424 130-631 6-458 (539)
43 KOG1173 Anaphase-promoting com 99.9 8.9E-18 1.9E-22 188.1 41.9 436 39-606 32-530 (611)
44 KOG2003 TPR repeat-containing 99.9 2E-18 4.3E-23 186.2 34.6 477 58-615 202-710 (840)
45 KOG1915 Cell cycle control pro 99.8 1.2E-15 2.6E-20 166.5 54.8 532 46-668 62-626 (677)
46 PLN03218 maturation of RBCL 1; 99.8 7.4E-16 1.6E-20 197.1 61.8 417 41-598 355-787 (1060)
47 KOG0624 dsRNA-activated protei 99.8 1.2E-17 2.7E-22 175.3 33.0 322 53-486 34-374 (504)
48 KOG4162 Predicted calmodulin-b 99.8 2.5E-16 5.4E-21 182.4 43.7 439 19-556 320-788 (799)
49 KOG1156 N-terminal acetyltrans 99.8 8.6E-15 1.9E-19 166.7 52.2 451 5-482 24-511 (700)
50 KOG4162 Predicted calmodulin-b 99.8 3.2E-16 7E-21 181.5 39.1 418 5-484 340-785 (799)
51 KOG1915 Cell cycle control pro 99.8 2E-14 4.4E-19 157.1 49.4 461 79-630 60-538 (677)
52 PRK12370 invasion protein regu 99.8 4.6E-17 9.9E-22 199.6 30.4 215 6-223 279-502 (553)
53 KOG1174 Anaphase-promoting com 99.8 1.3E-15 2.7E-20 164.1 36.9 404 19-487 94-505 (564)
54 PRK12370 invasion protein regu 99.8 1.2E-16 2.6E-21 195.9 33.1 225 18-243 252-490 (553)
55 KOG1174 Anaphase-promoting com 99.8 5.1E-15 1.1E-19 159.4 38.8 458 10-605 25-511 (564)
56 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-16 3.7E-21 178.7 29.0 228 5-239 43-282 (296)
57 PF13429 TPR_15: Tetratricopep 99.8 5E-18 1.1E-22 190.7 14.7 265 16-366 4-272 (280)
58 TIGR00540 hemY_coli hemY prote 99.8 2.4E-15 5.1E-20 177.9 37.5 201 26-228 88-297 (409)
59 KOG1156 N-terminal acetyltrans 99.8 5.9E-14 1.3E-18 160.0 46.4 473 60-627 10-510 (700)
60 TIGR00540 hemY_coli hemY prote 99.7 3.3E-15 7.2E-20 176.6 37.5 299 95-482 87-399 (409)
61 PF13429 TPR_15: Tetratricopep 99.7 1.3E-17 2.8E-22 187.3 14.8 248 5-263 25-276 (280)
62 TIGR02521 type_IV_pilW type IV 99.7 9E-16 2E-20 166.5 28.6 203 21-225 30-234 (234)
63 COG3063 PilF Tfp pilus assembl 99.7 2E-15 4.4E-20 152.5 25.4 207 22-230 35-243 (250)
64 KOG1125 TPR repeat-containing 99.7 3.5E-16 7.7E-21 176.5 21.1 254 26-288 289-554 (579)
65 PRK10747 putative protoheme IX 99.7 4.5E-14 9.8E-19 166.1 37.4 75 406-482 316-390 (398)
66 TIGR02521 type_IV_pilW type IV 99.7 8.5E-15 1.9E-19 158.8 28.1 197 56-260 30-228 (234)
67 PRK10747 putative protoheme IX 99.7 4.9E-14 1.1E-18 165.8 36.4 82 432-516 308-389 (398)
68 PRK11189 lipoprotein NlpI; Pro 99.7 9E-15 2E-19 164.8 28.9 177 39-221 42-222 (296)
69 KOG2047 mRNA splicing factor [ 99.7 1.6E-10 3.5E-15 131.5 59.0 608 11-659 16-715 (835)
70 KOG1129 TPR repeat-containing 99.7 8.1E-16 1.7E-20 160.9 15.5 238 25-272 226-466 (478)
71 COG3063 PilF Tfp pilus assembl 99.7 1.8E-14 3.8E-19 145.8 24.6 186 57-243 35-222 (250)
72 KOG1125 TPR repeat-containing 99.7 1.4E-15 3E-20 171.8 17.0 220 5-226 302-530 (579)
73 COG2956 Predicted N-acetylgluc 99.7 1.2E-13 2.7E-18 145.3 29.8 224 2-228 49-283 (389)
74 PLN02789 farnesyltranstransfer 99.7 4.3E-14 9.2E-19 158.7 28.0 218 22-241 37-268 (320)
75 PLN02789 farnesyltranstransfer 99.7 2.8E-14 6E-19 160.2 26.5 203 4-207 53-268 (320)
76 KOG1129 TPR repeat-containing 99.6 6.2E-15 1.3E-19 154.3 16.9 227 6-235 241-470 (478)
77 KOG2376 Signal recognition par 99.6 3.4E-11 7.5E-16 136.4 45.9 101 521-625 416-517 (652)
78 COG2956 Predicted N-acetylgluc 99.6 8.5E-13 1.8E-17 139.1 29.8 215 26-243 39-264 (389)
79 KOG3785 Uncharacterized conser 99.6 9.1E-12 2E-16 132.0 36.1 446 38-631 37-493 (557)
80 KOG2047 mRNA splicing factor [ 99.6 2.5E-09 5.4E-14 122.0 57.8 545 46-668 16-616 (835)
81 KOG0550 Molecular chaperone (D 99.6 1.6E-13 3.6E-18 148.7 22.0 251 5-264 66-350 (486)
82 KOG0550 Molecular chaperone (D 99.6 4.6E-13 9.9E-18 145.3 25.1 270 23-340 50-353 (486)
83 KOG2376 Signal recognition par 99.6 2.2E-10 4.7E-15 130.0 45.8 455 3-546 27-515 (652)
84 cd05804 StaR_like StaR_like; a 99.5 7.1E-12 1.5E-16 146.2 33.5 206 17-225 1-217 (355)
85 KOG1840 Kinesin light chain [C 99.5 8.1E-13 1.8E-17 154.4 24.1 244 17-266 194-481 (508)
86 KOG3785 Uncharacterized conser 99.5 7.1E-11 1.5E-15 125.3 36.0 402 2-478 37-453 (557)
87 cd05804 StaR_like StaR_like; a 99.5 2E-11 4.4E-16 142.4 34.2 204 53-261 2-212 (355)
88 TIGR03302 OM_YfiO outer membra 99.5 2.1E-12 4.6E-17 141.2 22.4 189 18-225 29-234 (235)
89 TIGR03302 OM_YfiO outer membra 99.5 3.1E-12 6.8E-17 139.8 22.5 168 5-191 50-234 (235)
90 KOG1840 Kinesin light chain [C 99.5 4.4E-12 9.4E-17 148.3 24.4 238 53-291 195-465 (508)
91 PF12569 NARP1: NMDA receptor- 99.5 8.4E-10 1.8E-14 131.1 43.7 269 5-275 21-345 (517)
92 PRK15359 type III secretion sy 99.4 3.9E-12 8.6E-17 126.8 15.3 123 9-136 14-136 (144)
93 PRK15359 type III secretion sy 99.4 6.6E-12 1.4E-16 125.2 16.7 125 113-240 14-138 (144)
94 PF12569 NARP1: NMDA receptor- 99.4 6.5E-09 1.4E-13 123.6 40.8 315 92-482 4-334 (517)
95 PRK10370 formate-dependent nit 99.4 5.7E-11 1.2E-15 125.0 20.4 155 64-230 23-180 (198)
96 KOG3060 Uncharacterized conser 99.3 1.5E-09 3.2E-14 111.6 28.9 204 38-242 27-239 (289)
97 COG5010 TadD Flp pilus assembl 99.3 1.1E-10 2.5E-15 121.3 20.2 180 39-220 49-228 (257)
98 COG5010 TadD Flp pilus assembl 99.3 2.2E-10 4.9E-15 119.1 21.1 171 77-248 52-222 (257)
99 KOG4340 Uncharacterized conser 99.3 1.1E-08 2.4E-13 106.8 32.0 186 34-223 22-207 (459)
100 COG3071 HemY Uncharacterized e 99.3 2.4E-08 5.2E-13 109.4 35.9 298 99-482 91-390 (400)
101 PRK14720 transcript cleavage f 99.3 3.2E-10 7E-15 139.8 23.8 206 16-240 25-269 (906)
102 KOG3060 Uncharacterized conser 99.3 1.1E-09 2.4E-14 112.5 23.7 181 22-204 52-235 (289)
103 PRK10370 formate-dependent nit 99.3 1.5E-10 3.2E-15 121.8 18.1 125 71-195 52-179 (198)
104 COG3071 HemY Uncharacterized e 99.3 3E-08 6.6E-13 108.7 35.1 77 328-447 314-390 (400)
105 PRK14720 transcript cleavage f 99.2 1.6E-09 3.5E-14 133.7 27.8 225 51-353 25-268 (906)
106 PRK15179 Vi polysaccharide bio 99.2 4.9E-10 1.1E-14 137.9 22.1 144 85-228 79-222 (694)
107 PRK15179 Vi polysaccharide bio 99.2 1.1E-09 2.3E-14 134.9 24.8 155 41-196 70-224 (694)
108 KOG4340 Uncharacterized conser 99.2 5.1E-08 1.1E-12 101.9 32.9 173 68-243 21-193 (459)
109 PRK04841 transcriptional regul 99.2 7.5E-08 1.6E-12 127.0 42.4 399 59-597 343-763 (903)
110 TIGR02552 LcrH_SycD type III s 99.2 5E-10 1.1E-14 110.8 16.0 109 83-191 8-116 (135)
111 TIGR02552 LcrH_SycD type III s 99.2 6.2E-10 1.3E-14 110.1 16.4 118 113-230 4-121 (135)
112 PRK04841 transcriptional regul 99.1 1.7E-07 3.7E-12 123.6 39.9 382 23-484 342-762 (903)
113 KOG1130 Predicted G-alpha GTPa 99.1 1E-08 2.2E-13 111.2 22.4 313 200-630 23-346 (639)
114 KOG1128 Uncharacterized conser 99.1 2.2E-09 4.8E-14 124.9 18.6 208 19-243 395-602 (777)
115 COG4783 Putative Zn-dependent 99.1 2E-08 4.4E-13 112.9 25.4 157 53-227 302-458 (484)
116 KOG0553 TPR repeat-containing 99.1 1.1E-09 2.3E-14 116.2 13.1 115 127-241 82-196 (304)
117 KOG1130 Predicted G-alpha GTPa 99.1 2.7E-09 5.9E-14 115.6 15.4 276 102-482 27-344 (639)
118 KOG1128 Uncharacterized conser 99.0 6E-09 1.3E-13 121.4 18.4 194 22-224 424-617 (777)
119 KOG0553 TPR repeat-containing 99.0 3.8E-09 8.2E-14 112.0 14.2 117 95-211 84-200 (304)
120 PRK15363 pathogenicity island 99.0 1.4E-08 3E-13 99.4 16.2 106 120-225 28-134 (157)
121 COG4783 Putative Zn-dependent 99.0 7.8E-08 1.7E-12 108.3 24.2 139 88-226 302-440 (484)
122 PRK15363 pathogenicity island 99.0 1.1E-08 2.4E-13 100.0 15.3 102 89-190 32-133 (157)
123 PRK10866 outer membrane biogen 98.9 2.5E-07 5.4E-12 100.6 23.3 164 56-220 31-238 (243)
124 KOG3617 WD40 and TPR repeat-co 98.9 0.0001 2.2E-09 87.0 44.5 183 23-220 758-993 (1416)
125 PLN03088 SGT1, suppressor of 98.9 4.2E-08 9.2E-13 113.2 17.0 113 129-241 5-117 (356)
126 PF04733 Coatomer_E: Coatomer 98.9 1.8E-08 3.9E-13 112.2 12.8 253 71-452 14-270 (290)
127 PF13525 YfiO: Outer membrane 98.8 2.4E-07 5.2E-12 98.3 20.5 168 21-213 4-197 (203)
128 PRK10866 outer membrane biogen 98.8 4.5E-07 9.7E-12 98.6 22.8 164 21-186 31-238 (243)
129 PLN03088 SGT1, suppressor of 98.8 5.3E-08 1.1E-12 112.5 16.5 103 64-167 9-111 (356)
130 KOG2053 Mitochondrial inherita 98.8 0.00079 1.7E-08 81.4 50.0 221 4-227 25-259 (932)
131 COG4235 Cytochrome c biogenesi 98.8 1.2E-07 2.6E-12 101.8 16.1 120 74-193 138-260 (287)
132 PF13525 YfiO: Outer membrane 98.8 5.1E-07 1.1E-11 95.8 19.9 157 5-180 22-198 (203)
133 PF04733 Coatomer_E: Coatomer 98.8 7.1E-08 1.5E-12 107.4 13.7 166 57-228 102-270 (290)
134 COG4235 Cytochrome c biogenesi 98.8 2.4E-07 5.3E-12 99.4 17.1 123 108-230 138-263 (287)
135 KOG3617 WD40 and TPR repeat-co 98.8 9.1E-05 2E-09 87.3 38.8 333 132-549 806-1172(1416)
136 KOG1914 mRNA cleavage and poly 98.8 0.00094 2E-08 76.4 45.6 230 328-596 265-503 (656)
137 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.3E-07 5E-12 89.2 14.5 104 127-230 3-112 (119)
138 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.6E-07 5.6E-12 88.8 14.4 98 60-158 5-108 (119)
139 COG0457 NrfG FOG: TPR repeat [ 98.7 8.8E-06 1.9E-10 87.0 28.0 218 7-226 42-268 (291)
140 CHL00033 ycf3 photosystem I as 98.7 3.5E-07 7.6E-12 94.1 15.8 134 141-274 14-152 (168)
141 KOG1070 rRNA processing protei 98.7 8.9E-06 1.9E-10 101.0 29.8 216 7-225 1443-1665(1710)
142 COG4785 NlpI Lipoprotein NlpI, 98.7 4.8E-07 1E-11 90.9 15.5 200 21-227 64-270 (297)
143 PRK11906 transcriptional regul 98.7 1.2E-06 2.5E-11 99.8 20.0 160 61-221 259-434 (458)
144 PRK02603 photosystem I assembl 98.7 4.9E-07 1.1E-11 93.4 15.9 94 57-151 35-131 (172)
145 PF09976 TPR_21: Tetratricopep 98.7 8.4E-07 1.8E-11 88.8 17.0 115 71-186 24-144 (145)
146 cd00189 TPR Tetratricopeptide 98.7 2.5E-07 5.3E-12 83.8 12.0 97 129-225 3-99 (100)
147 KOG2053 Mitochondrial inherita 98.7 0.0029 6.3E-08 76.7 48.5 134 104-238 21-154 (932)
148 PRK02603 photosystem I assembl 98.7 1E-06 2.3E-11 91.0 17.9 92 94-185 37-131 (172)
149 PRK10153 DNA-binding transcrip 98.6 1.3E-06 2.9E-11 104.9 20.1 149 53-229 333-488 (517)
150 COG4785 NlpI Lipoprotein NlpI, 98.6 2.7E-06 5.8E-11 85.6 18.5 201 56-263 64-265 (297)
151 PRK10153 DNA-binding transcrip 98.6 1.2E-06 2.6E-11 105.2 19.4 137 120-257 331-482 (517)
152 PF14938 SNAP: Soluble NSF att 98.6 1.5E-06 3.3E-11 97.4 19.1 186 418-636 35-233 (282)
153 cd00189 TPR Tetratricopeptide 98.6 3.9E-07 8.4E-12 82.5 11.9 81 71-151 13-93 (100)
154 PF09976 TPR_21: Tetratricopep 98.6 1.7E-06 3.6E-11 86.7 17.1 121 30-153 19-145 (145)
155 PRK11906 transcriptional regul 98.6 1.3E-06 2.8E-11 99.4 17.8 118 7-125 277-405 (458)
156 PF13414 TPR_11: TPR repeat; P 98.6 1.8E-07 3.9E-12 80.4 8.5 67 21-89 2-69 (69)
157 CHL00033 ycf3 photosystem I as 98.6 1.2E-06 2.6E-11 90.2 15.6 78 59-137 37-117 (168)
158 PF13414 TPR_11: TPR repeat; P 98.6 2.2E-07 4.7E-12 79.9 8.3 65 127-191 4-69 (69)
159 KOG1914 mRNA cleavage and poly 98.6 0.0037 8.1E-08 71.7 43.3 255 12-270 10-321 (656)
160 COG0457 NrfG FOG: TPR repeat [ 98.5 8.5E-05 1.8E-09 79.2 29.8 246 12-265 12-266 (291)
161 KOG0543 FKBP-type peptidyl-pro 98.5 1.8E-06 4E-11 95.8 14.8 114 130-243 212-340 (397)
162 PF12895 Apc3: Anaphase-promot 98.5 3.9E-07 8.5E-12 81.7 7.7 19 133-151 32-50 (84)
163 PF12895 Apc3: Anaphase-promot 98.5 3.1E-07 6.7E-12 82.4 7.1 82 138-220 1-84 (84)
164 PRK15331 chaperone protein Sic 98.5 2.5E-06 5.4E-11 84.1 13.6 108 120-228 31-138 (165)
165 KOG1941 Acetylcholine receptor 98.5 5.1E-05 1.1E-09 82.0 24.2 242 23-267 7-278 (518)
166 PF13432 TPR_16: Tetratricopep 98.5 5.4E-07 1.2E-11 76.4 7.5 62 166-227 3-64 (65)
167 PF13432 TPR_16: Tetratricopep 98.4 6.5E-07 1.4E-11 75.9 7.8 63 27-91 2-64 (65)
168 PRK10803 tol-pal system protei 98.4 6E-06 1.3E-10 90.4 16.8 105 126-230 142-253 (263)
169 PF14938 SNAP: Soluble NSF att 98.4 4.5E-06 9.8E-11 93.6 15.7 165 63-229 41-231 (282)
170 PRK15331 chaperone protein Sic 98.4 3.6E-06 7.8E-11 83.0 12.7 100 89-188 34-133 (165)
171 PRK10803 tol-pal system protei 98.4 7.6E-06 1.7E-10 89.6 16.9 101 23-125 143-250 (263)
172 KOG1070 rRNA processing protei 98.4 3.5E-05 7.5E-10 96.0 23.4 214 41-263 1442-1662(1710)
173 KOG0543 FKBP-type peptidyl-pro 98.4 6E-06 1.3E-10 91.8 15.3 147 59-225 210-357 (397)
174 COG4105 ComL DNA uptake lipopr 98.4 5.7E-05 1.2E-09 79.7 21.4 171 57-228 34-238 (254)
175 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 8.8E-06 1.9E-10 93.5 16.3 124 95-221 172-295 (395)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 9.9E-06 2.1E-10 93.1 16.3 120 63-186 175-294 (395)
177 KOG4648 Uncharacterized conser 98.3 2.4E-07 5.2E-12 98.6 1.8 191 25-227 100-300 (536)
178 KOG3616 Selective LIM binding 98.3 0.022 4.7E-07 67.0 42.6 160 420-623 767-932 (1636)
179 COG4105 ComL DNA uptake lipopr 98.3 0.00021 4.6E-09 75.5 22.6 171 21-193 33-237 (254)
180 KOG3616 Selective LIM binding 98.2 0.0066 1.4E-07 71.1 35.9 135 63-217 712-847 (1636)
181 COG4700 Uncharacterized protei 98.2 0.00013 2.7E-09 72.2 18.9 158 63-223 62-222 (251)
182 PF12688 TPR_5: Tetratrico pep 98.2 2.3E-05 4.9E-10 74.6 13.5 94 59-153 3-102 (120)
183 COG4700 Uncharacterized protei 98.2 0.00024 5.3E-09 70.2 20.4 144 107-252 71-217 (251)
184 KOG1941 Acetylcholine receptor 98.2 0.00015 3.3E-09 78.5 20.4 166 57-223 83-275 (518)
185 PF12688 TPR_5: Tetratrico pep 98.2 3.2E-05 7E-10 73.6 13.7 95 94-188 3-103 (120)
186 KOG4648 Uncharacterized conser 98.2 3.1E-06 6.8E-11 90.3 7.0 103 61-164 101-203 (536)
187 PF14559 TPR_19: Tetratricopep 98.1 5.6E-06 1.2E-10 70.8 7.0 55 173-227 4-58 (68)
188 KOG2471 TPR repeat-containing 98.1 0.0042 9.1E-08 70.1 30.8 318 323-664 221-681 (696)
189 KOG4234 TPR repeat-containing 98.1 3E-05 6.5E-10 77.3 12.8 110 128-237 97-211 (271)
190 COG1729 Uncharacterized protei 98.1 4.4E-05 9.5E-10 81.4 14.8 103 129-231 144-252 (262)
191 PF14559 TPR_19: Tetratricopep 98.1 7.8E-06 1.7E-10 69.9 7.5 58 71-128 4-61 (68)
192 KOG2300 Uncharacterized conser 98.1 0.033 7.1E-07 63.3 45.4 197 420-624 325-552 (629)
193 KOG2471 TPR repeat-containing 98.1 0.00039 8.5E-09 78.1 22.2 218 22-241 100-382 (696)
194 PF13371 TPR_9: Tetratricopept 98.1 1.4E-05 3E-10 69.5 8.7 58 136-193 5-62 (73)
195 PF13371 TPR_9: Tetratricopept 98.1 1.6E-05 3.4E-10 69.1 8.6 68 166-233 1-68 (73)
196 PF10345 Cohesin_load: Cohesin 98.1 0.083 1.8E-06 66.1 49.9 471 39-592 37-604 (608)
197 KOG2300 Uncharacterized conser 98.1 0.042 9.2E-07 62.5 47.5 463 23-589 8-551 (629)
198 COG3898 Uncharacterized membra 98.0 0.02 4.3E-07 63.4 32.8 294 98-482 90-392 (531)
199 KOG4234 TPR repeat-containing 98.0 6.1E-05 1.3E-09 75.2 12.1 97 62-159 100-201 (271)
200 KOG3081 Vesicle coat complex C 98.0 0.0013 2.8E-08 69.2 21.7 198 24-230 74-278 (299)
201 COG1729 Uncharacterized protei 98.0 0.00011 2.5E-09 78.3 14.3 101 60-161 144-250 (262)
202 PF13512 TPR_18: Tetratricopep 98.0 0.00018 4E-09 69.6 14.3 105 126-230 10-135 (142)
203 PF13512 TPR_18: Tetratricopep 98.0 0.00014 3.1E-09 70.3 13.5 82 58-140 11-98 (142)
204 COG3898 Uncharacterized membra 98.0 0.0052 1.1E-07 67.7 26.4 168 22-192 120-295 (531)
205 PF10300 DUF3808: Protein of u 97.9 0.013 2.8E-07 70.4 32.5 179 440-627 179-375 (468)
206 PF13424 TPR_12: Tetratricopep 97.9 1.7E-05 3.6E-10 69.9 5.7 74 519-594 2-75 (78)
207 KOG3081 Vesicle coat complex C 97.9 0.0024 5.2E-08 67.3 22.0 220 20-251 39-264 (299)
208 KOG0128 RNA-binding protein SA 97.9 0.073 1.6E-06 64.6 36.8 450 140-658 93-554 (881)
209 KOG1258 mRNA processing protei 97.8 0.15 3.3E-06 60.2 40.1 414 108-613 61-489 (577)
210 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.0003 6.4E-09 80.5 14.0 69 121-189 70-141 (453)
211 KOG2796 Uncharacterized conser 97.8 0.0011 2.3E-08 69.3 16.6 186 27-227 127-319 (366)
212 KOG4555 TPR repeat-containing 97.8 0.00092 2E-08 62.3 14.2 94 27-122 48-145 (175)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00012 2.6E-09 83.6 10.0 68 18-87 71-141 (453)
214 KOG2796 Uncharacterized conser 97.7 0.0062 1.3E-07 63.8 21.3 132 126-257 177-315 (366)
215 KOG4555 TPR repeat-containing 97.7 0.0013 2.9E-08 61.2 14.7 98 129-226 46-147 (175)
216 PF10345 Cohesin_load: Cohesin 97.7 0.3 6.6E-06 61.1 46.8 483 75-626 38-604 (608)
217 KOG1586 Protein required for f 97.7 0.0041 9E-08 64.1 19.3 184 418-635 34-231 (288)
218 PF06552 TOM20_plant: Plant sp 97.7 0.0017 3.8E-08 64.8 16.1 115 210-394 7-121 (186)
219 PF04184 ST7: ST7 protein; In 97.7 0.0027 5.9E-08 72.7 19.5 144 93-237 260-428 (539)
220 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.21 4.5E-06 56.5 40.4 125 465-598 409-535 (660)
221 KOG2610 Uncharacterized conser 97.6 0.0051 1.1E-07 66.4 19.0 159 62-221 108-274 (491)
222 PF06552 TOM20_plant: Plant sp 97.6 0.0012 2.7E-08 65.9 13.2 107 176-285 7-123 (186)
223 PF04184 ST7: ST7 protein; In 97.6 0.0051 1.1E-07 70.5 19.8 186 31-231 177-383 (539)
224 KOG1586 Protein required for f 97.6 0.023 5E-07 58.8 22.2 180 36-231 27-232 (288)
225 PF13424 TPR_12: Tetratricopep 97.5 0.00024 5.3E-09 62.5 7.2 74 193-266 4-77 (78)
226 PF05843 Suf: Suppressor of fo 97.5 0.0028 6.1E-08 70.8 17.3 133 25-158 4-139 (280)
227 PF05843 Suf: Suppressor of fo 97.5 0.0021 4.6E-08 71.8 16.0 133 59-192 3-139 (280)
228 KOG4507 Uncharacterized conser 97.4 0.063 1.4E-06 62.3 25.9 116 115-231 202-320 (886)
229 KOG1585 Protein required for f 97.4 0.021 4.5E-07 59.5 19.8 192 23-217 32-250 (308)
230 KOG2610 Uncharacterized conser 97.4 0.013 2.9E-07 63.3 18.9 126 95-220 106-235 (491)
231 KOG0545 Aryl-hydrocarbon recep 97.4 0.0019 4E-08 66.9 12.1 110 522-631 178-296 (329)
232 KOG0530 Protein farnesyltransf 97.4 0.014 3E-07 61.4 18.0 165 7-172 62-233 (318)
233 KOG0530 Protein farnesyltransf 97.3 0.043 9.4E-07 57.8 21.2 244 33-281 53-308 (318)
234 COG3118 Thioredoxin domain-con 97.3 0.018 4E-07 62.1 19.0 162 56-219 133-297 (304)
235 KOG0890 Protein kinase of the 97.3 0.49 1.1E-05 64.1 35.4 368 62-529 1388-1796(2382)
236 PF13428 TPR_14: Tetratricopep 97.3 0.00056 1.2E-08 52.7 5.3 40 418-457 1-40 (44)
237 KOG1258 mRNA processing protei 97.3 0.75 1.6E-05 54.6 39.3 121 414-536 362-489 (577)
238 KOG4507 Uncharacterized conser 97.2 0.06 1.3E-06 62.4 23.1 113 47-160 203-317 (886)
239 PF13428 TPR_14: Tetratricopep 97.2 0.00063 1.4E-08 52.3 5.2 40 59-99 3-42 (44)
240 KOG4642 Chaperone-dependent E3 97.2 0.00076 1.6E-08 69.6 6.9 92 132-223 16-107 (284)
241 PF13431 TPR_17: Tetratricopep 97.2 0.00032 7E-09 50.4 3.0 32 407-438 2-33 (34)
242 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.74 1.6E-05 52.3 40.9 230 406-658 290-522 (660)
243 KOG0985 Vesicle coat protein c 97.1 1.3 2.8E-05 55.0 44.6 30 324-353 1295-1324(1666)
244 KOG4642 Chaperone-dependent E3 97.1 0.0013 2.7E-08 68.0 7.1 82 71-152 23-104 (284)
245 KOG0376 Serine-threonine phosp 97.0 0.00079 1.7E-08 76.7 5.7 108 131-238 9-116 (476)
246 PF00515 TPR_1: Tetratricopept 97.0 0.0011 2.4E-08 47.7 4.4 34 418-451 1-34 (34)
247 KOG1585 Protein required for f 97.0 0.051 1.1E-06 56.7 17.4 166 58-224 32-220 (308)
248 PF13281 DUF4071: Domain of un 97.0 0.082 1.8E-06 60.3 21.0 171 56-228 140-339 (374)
249 KOG0985 Vesicle coat protein c 97.0 1.8 4E-05 53.8 44.1 182 416-628 1102-1308(1666)
250 PF07719 TPR_2: Tetratricopept 96.9 0.0018 3.8E-08 46.5 5.0 34 418-451 1-34 (34)
251 KOG0545 Aryl-hydrocarbon recep 96.9 0.0068 1.5E-07 62.8 10.4 104 126-229 178-299 (329)
252 KOG0376 Serine-threonine phosp 96.8 0.0016 3.5E-08 74.2 5.8 99 71-169 17-115 (476)
253 COG3118 Thioredoxin domain-con 96.8 0.057 1.2E-06 58.4 16.9 160 22-184 134-296 (304)
254 PF13431 TPR_17: Tetratricopep 96.7 0.0019 4.1E-08 46.5 3.7 33 511-543 2-34 (34)
255 PF03704 BTAD: Bacterial trans 96.7 0.026 5.6E-07 56.4 13.2 101 528-628 12-125 (146)
256 KOG1550 Extracellular protein 96.7 0.88 1.9E-05 56.1 28.6 150 40-224 229-394 (552)
257 COG2976 Uncharacterized protei 96.7 0.25 5.4E-06 50.4 19.1 95 130-226 93-191 (207)
258 KOG2396 HAT (Half-A-TPR) repea 96.6 2 4.3E-05 49.9 44.3 95 459-553 466-561 (568)
259 KOG2396 HAT (Half-A-TPR) repea 96.6 2 4.4E-05 49.9 44.7 442 144-627 89-558 (568)
260 PF07079 DUF1347: Protein of u 96.6 2.1 4.6E-05 49.0 47.3 53 572-625 469-521 (549)
261 PF00515 TPR_1: Tetratricopept 96.6 0.0039 8.4E-08 44.8 4.4 32 58-90 2-33 (34)
262 PF07719 TPR_2: Tetratricopept 96.5 0.0054 1.2E-07 43.9 5.0 33 58-91 2-34 (34)
263 PF03704 BTAD: Bacterial trans 96.5 0.055 1.2E-06 54.0 14.1 62 161-222 63-124 (146)
264 KOG1550 Extracellular protein 96.5 0.32 6.9E-06 59.9 23.4 171 7-186 231-423 (552)
265 PF08631 SPO22: Meiosis protei 96.5 1.4 3E-05 49.3 26.5 227 33-263 4-274 (278)
266 PF02259 FAT: FAT domain; Int 96.5 1.5 3.3E-05 50.7 28.0 67 156-222 142-212 (352)
267 PF10300 DUF3808: Protein of u 96.4 0.086 1.9E-06 63.4 17.3 152 71-222 201-375 (468)
268 PF13281 DUF4071: Domain of un 96.4 0.25 5.5E-06 56.4 19.9 173 21-195 140-340 (374)
269 COG2909 MalT ATP-dependent tra 96.4 0.71 1.5E-05 57.1 24.5 249 9-259 397-683 (894)
270 KOG0890 Protein kinase of the 96.4 7.5 0.00016 53.5 36.7 86 521-606 1701-1796(2382)
271 PF08424 NRDE-2: NRDE-2, neces 96.3 0.23 5E-06 56.7 19.3 80 75-154 48-130 (321)
272 PF02259 FAT: FAT domain; Int 96.3 1.7 3.7E-05 50.3 27.1 151 123-273 143-340 (352)
273 KOG0551 Hsp90 co-chaperone CNS 96.3 0.073 1.6E-06 58.0 13.7 102 126-227 81-186 (390)
274 COG0790 FOG: TPR repeat, SEL1 96.3 1.3 2.9E-05 49.8 25.2 178 39-225 57-268 (292)
275 PF13181 TPR_8: Tetratricopept 96.1 0.0094 2E-07 42.7 4.2 33 419-451 2-34 (34)
276 COG2976 Uncharacterized protei 96.0 1.3 2.9E-05 45.2 20.0 117 76-193 70-192 (207)
277 PF08424 NRDE-2: NRDE-2, neces 95.9 0.64 1.4E-05 53.1 20.1 122 143-264 48-183 (321)
278 PF08631 SPO22: Meiosis protei 95.8 4.3 9.3E-05 45.4 28.3 63 205-267 4-68 (278)
279 COG0790 FOG: TPR repeat, SEL1 95.8 3.5 7.5E-05 46.4 25.6 176 7-192 60-269 (292)
280 PRK13184 pknD serine/threonine 95.8 4.7 0.0001 52.1 28.7 106 132-238 481-596 (932)
281 KOG1308 Hsp70-interacting prot 95.8 0.0088 1.9E-07 65.3 4.0 94 133-226 121-214 (377)
282 PF04910 Tcf25: Transcriptiona 95.6 0.68 1.5E-05 53.5 19.0 143 512-654 30-194 (360)
283 KOG2041 WD40 repeat protein [G 95.6 7.6 0.00016 46.7 28.1 184 11-219 682-877 (1189)
284 KOG1308 Hsp70-interacting prot 95.2 0.019 4.2E-07 62.8 4.4 90 103-192 125-214 (377)
285 KOG0551 Hsp90 co-chaperone CNS 95.1 0.097 2.1E-06 57.2 9.2 98 95-192 84-185 (390)
286 PF13181 TPR_8: Tetratricopept 95.1 0.035 7.6E-07 39.7 4.2 31 58-89 2-32 (34)
287 PF04781 DUF627: Protein of un 95.1 0.048 1E-06 50.3 5.7 90 1012-1105 2-98 (111)
288 KOG1464 COP9 signalosome, subu 94.8 1.4 3.1E-05 46.7 16.2 189 38-227 42-264 (440)
289 PF13174 TPR_6: Tetratricopept 94.7 0.053 1.1E-06 38.3 4.2 33 419-451 1-33 (33)
290 PF04910 Tcf25: Transcriptiona 94.7 1 2.2E-05 52.1 16.7 35 50-85 33-67 (360)
291 KOG0128 RNA-binding protein SA 94.5 17 0.00037 45.1 34.8 152 72-224 93-261 (881)
292 PF13176 TPR_7: Tetratricopept 94.4 0.062 1.4E-06 39.2 3.9 28 420-447 1-28 (36)
293 PF13176 TPR_7: Tetratricopept 94.3 0.094 2E-06 38.2 4.7 29 524-552 1-29 (36)
294 PF14561 TPR_20: Tetratricopep 94.2 0.45 9.8E-06 42.9 10.0 68 146-213 8-77 (90)
295 PF13174 TPR_6: Tetratricopept 94.2 0.073 1.6E-06 37.6 4.0 31 567-597 2-32 (33)
296 KOG2041 WD40 repeat protein [G 94.1 3.5 7.7E-05 49.4 19.1 123 411-548 686-822 (1189)
297 COG4649 Uncharacterized protei 93.8 4.3 9.4E-05 40.6 16.2 135 105-240 71-212 (221)
298 PF09613 HrpB1_HrpK: Bacterial 93.6 0.91 2E-05 45.2 11.5 85 127-211 11-95 (160)
299 PF14561 TPR_20: Tetratricopep 93.5 0.66 1.4E-05 41.9 9.6 44 45-89 10-53 (90)
300 PF09613 HrpB1_HrpK: Bacterial 93.4 1 2.2E-05 44.8 11.6 72 104-175 22-93 (160)
301 COG4649 Uncharacterized protei 93.3 5.7 0.00012 39.8 16.2 135 71-206 71-212 (221)
302 PF09986 DUF2225: Uncharacteri 93.3 1.3 2.7E-05 47.2 13.0 92 535-628 90-194 (214)
303 KOG3824 Huntingtin interacting 93.2 0.27 5.9E-06 52.9 7.6 63 71-133 129-191 (472)
304 KOG3807 Predicted membrane pro 93.2 6.2 0.00013 43.3 17.7 103 506-630 202-306 (556)
305 PF12968 DUF3856: Domain of Un 93.1 2.8 6E-05 39.2 12.7 99 529-627 16-128 (144)
306 smart00028 TPR Tetratricopepti 92.9 0.15 3.3E-06 34.9 3.8 33 419-451 2-34 (34)
307 PRK10941 hypothetical protein; 92.8 0.85 1.8E-05 50.2 11.2 71 162-232 183-253 (269)
308 KOG1464 COP9 signalosome, subu 92.8 3.9 8.4E-05 43.6 15.1 213 71-284 40-280 (440)
309 PRK10941 hypothetical protein; 92.4 1.2 2.6E-05 49.0 11.6 77 127-203 182-258 (269)
310 COG5159 RPN6 26S proteasome re 92.2 12 0.00025 40.6 17.8 102 526-630 129-237 (421)
311 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 0.8 1.7E-05 36.6 7.3 36 196-231 3-38 (53)
312 KOG3824 Huntingtin interacting 91.9 0.49 1.1E-05 51.0 7.5 63 138-200 128-190 (472)
313 PF07079 DUF1347: Protein of u 91.9 30 0.00064 40.2 50.1 129 24-155 8-157 (549)
314 PF14853 Fis1_TPR_C: Fis1 C-te 91.8 0.68 1.5E-05 37.0 6.5 37 162-198 3-39 (53)
315 PF04781 DUF627: Protein of un 91.6 1.5 3.3E-05 40.7 9.4 43 145-187 63-105 (111)
316 COG2909 MalT ATP-dependent tra 91.2 51 0.0011 41.6 40.4 100 126-225 415-528 (894)
317 COG3914 Spy Predicted O-linked 91.0 7.2 0.00016 46.5 16.2 121 111-231 50-179 (620)
318 KOG3783 Uncharacterized conser 90.9 41 0.00089 40.0 29.5 131 143-273 250-384 (546)
319 PF12968 DUF3856: Domain of Un 90.8 3.4 7.3E-05 38.6 10.6 109 462-593 18-128 (144)
320 PRK15180 Vi polysaccharide bio 90.6 39 0.00085 39.2 29.2 123 34-158 301-423 (831)
321 TIGR02561 HrpB1_HrpK type III 90.5 2.8 6.1E-05 41.1 10.5 80 131-210 15-94 (153)
322 PF10602 RPN7: 26S proteasome 90.4 3.3 7.2E-05 42.7 11.9 101 522-628 36-142 (177)
323 smart00028 TPR Tetratricopepti 90.4 0.41 8.9E-06 32.6 3.8 30 59-89 3-32 (34)
324 KOG2422 Uncharacterized conser 90.4 19 0.00042 42.8 18.8 152 39-192 254-451 (665)
325 TIGR02561 HrpB1_HrpK type III 90.0 9.9 0.00022 37.4 13.7 68 39-107 26-93 (153)
326 KOG3783 Uncharacterized conser 90.0 12 0.00026 44.3 16.9 234 8-265 253-521 (546)
327 COG3914 Spy Predicted O-linked 89.9 11 0.00025 44.9 16.6 133 141-274 46-181 (620)
328 KOG1463 26S proteasome regulat 89.7 38 0.00083 37.8 20.3 107 163-269 131-243 (411)
329 PF10602 RPN7: 26S proteasome 89.7 2.9 6.2E-05 43.2 10.7 101 161-262 37-140 (177)
330 KOG1839 Uncharacterized protei 89.7 3.6 7.8E-05 53.4 13.5 175 95-269 935-1133(1236)
331 COG4976 Predicted methyltransf 89.0 0.57 1.2E-05 48.7 4.8 57 171-227 6-62 (287)
332 PF09986 DUF2225: Uncharacteri 88.9 6.3 0.00014 42.0 12.9 86 522-607 118-208 (214)
333 PF13374 TPR_10: Tetratricopep 88.5 0.88 1.9E-05 33.9 4.6 30 418-447 2-31 (42)
334 KOG3364 Membrane protein invol 88.2 7.1 0.00015 37.6 11.0 72 160-231 32-108 (149)
335 PF13374 TPR_10: Tetratricopep 88.1 0.93 2E-05 33.7 4.5 29 566-594 3-31 (42)
336 COG4976 Predicted methyltransf 87.6 0.74 1.6E-05 47.9 4.5 59 136-194 5-63 (287)
337 KOG0529 Protein geranylgeranyl 87.5 11 0.00025 43.0 14.1 166 34-199 40-234 (421)
338 KOG1310 WD40 repeat protein [G 87.3 1.6 3.5E-05 50.7 7.4 96 133-228 381-479 (758)
339 PF11207 DUF2989: Protein of u 86.6 5.2 0.00011 41.5 10.0 75 71-146 119-198 (203)
340 PF12862 Apc5: Anaphase-promot 86.6 3.2 6.9E-05 37.8 7.9 64 531-594 7-70 (94)
341 KOG3364 Membrane protein invol 86.4 12 0.00027 36.0 11.5 33 129-161 74-106 (149)
342 KOG1310 WD40 repeat protein [G 86.3 2.2 4.7E-05 49.6 7.8 87 72-158 388-477 (758)
343 KOG1839 Uncharacterized protei 86.3 5.5 0.00012 51.8 12.1 163 58-221 933-1126(1236)
344 KOG4814 Uncharacterized conser 86.1 4.9 0.00011 47.9 10.6 102 526-630 358-459 (872)
345 COG1747 Uncharacterized N-term 85.7 83 0.0018 37.2 22.3 178 44-227 87-292 (711)
346 KOG0529 Protein geranylgeranyl 85.4 37 0.0008 39.1 16.7 163 71-233 41-234 (421)
347 PF04053 Coatomer_WDAD: Coatom 84.3 35 0.00077 40.7 17.1 154 430-625 273-428 (443)
348 COG5191 Uncharacterized conser 84.2 2 4.4E-05 46.7 6.0 87 44-131 94-181 (435)
349 PF04053 Coatomer_WDAD: Coatom 84.2 28 0.0006 41.6 16.2 27 159-185 346-372 (443)
350 KOG2422 Uncharacterized conser 83.9 1.1E+02 0.0023 36.9 20.1 109 517-625 279-404 (665)
351 COG1747 Uncharacterized N-term 83.5 1E+02 0.0022 36.5 21.7 177 10-193 88-292 (711)
352 COG5191 Uncharacterized conser 83.3 2 4.4E-05 46.7 5.5 77 122-198 103-180 (435)
353 KOG1538 Uncharacterized conser 82.6 69 0.0015 38.8 17.7 217 421-665 588-831 (1081)
354 COG3629 DnrI DNA-binding trans 82.5 9.1 0.0002 42.2 10.3 64 564-627 152-215 (280)
355 COG5159 RPN6 26S proteasome re 82.3 82 0.0018 34.4 21.1 103 163-267 128-238 (421)
356 PRK15180 Vi polysaccharide bio 82.2 1.1E+02 0.0024 35.8 32.4 122 71-192 302-423 (831)
357 KOG1538 Uncharacterized conser 81.5 80 0.0017 38.2 17.7 211 25-261 588-830 (1081)
358 PF00244 14-3-3: 14-3-3 protei 81.4 85 0.0018 34.0 19.7 62 163-224 4-67 (236)
359 COG3629 DnrI DNA-binding trans 77.0 11 0.00024 41.6 8.8 64 160-223 153-216 (280)
360 COG2912 Uncharacterized conser 77.0 14 0.00029 40.4 9.3 70 163-232 184-253 (269)
361 PF07720 TPR_3: Tetratricopept 76.8 7.2 0.00016 28.4 5.0 33 419-451 2-36 (36)
362 PRK13184 pknD serine/threonine 76.6 2.6E+02 0.0055 36.8 33.2 128 100-228 483-625 (932)
363 PF11207 DUF2989: Protein of u 76.6 39 0.00083 35.3 12.0 76 138-214 118-198 (203)
364 KOG3807 Predicted membrane pro 74.9 1.4E+02 0.0031 33.2 21.5 117 96-225 188-306 (556)
365 COG2912 Uncharacterized conser 74.9 16 0.00035 39.8 9.2 73 129-201 184-256 (269)
366 KOG0276 Vesicle coat complex C 74.2 44 0.00095 40.1 12.9 85 519-625 663-747 (794)
367 PF00244 14-3-3: 14-3-3 protei 73.7 38 0.00082 36.7 11.9 58 420-477 3-61 (236)
368 PF07721 TPR_4: Tetratricopept 73.5 4 8.7E-05 27.1 2.8 24 419-442 2-25 (26)
369 PF12862 Apc5: Anaphase-promot 73.2 20 0.00043 32.6 8.2 66 204-269 8-75 (94)
370 PF10516 SHNi-TPR: SHNi-TPR; 73.1 5.4 0.00012 29.4 3.6 29 419-447 2-30 (38)
371 KOG2062 26S proteasome regulat 72.6 2.6E+02 0.0055 34.9 36.3 163 54-222 56-238 (929)
372 PF15015 NYD-SP12_N: Spermatog 72.1 20 0.00043 41.0 9.2 89 132-220 182-288 (569)
373 PF07721 TPR_4: Tetratricopept 71.5 4.8 0.0001 26.8 2.8 24 523-546 2-25 (26)
374 TIGR03504 FimV_Cterm FimV C-te 70.8 8.1 0.00018 29.6 4.2 24 569-592 3-26 (44)
375 COG3947 Response regulator con 70.6 16 0.00034 39.9 7.7 61 567-627 281-341 (361)
376 PF10579 Rapsyn_N: Rapsyn N-te 70.2 33 0.00071 29.9 8.1 59 25-85 9-70 (80)
377 TIGR03504 FimV_Cterm FimV C-te 69.1 7.1 0.00015 29.9 3.5 26 603-628 3-28 (44)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 69.1 78 0.0017 30.6 11.7 85 536-626 40-126 (126)
379 PF15015 NYD-SP12_N: Spermatog 69.0 57 0.0012 37.5 11.9 53 97-149 233-285 (569)
380 PRK12798 chemotaxis protein; R 68.7 2.4E+02 0.0052 33.0 22.7 210 406-625 99-321 (421)
381 PRK11619 lytic murein transgly 68.3 3.3E+02 0.0071 34.4 41.7 139 60-210 36-179 (644)
382 PF13041 PPR_2: PPR repeat fam 68.1 17 0.00038 28.3 5.9 41 566-606 4-45 (50)
383 PF11817 Foie-gras_1: Foie gra 67.8 41 0.00089 36.8 10.8 85 539-626 155-245 (247)
384 KOG4014 Uncharacterized conser 67.4 1.5E+02 0.0033 30.3 15.8 186 19-223 31-233 (248)
385 COG4941 Predicted RNA polymera 67.1 2.2E+02 0.0048 32.1 17.3 182 40-232 213-403 (415)
386 PF10579 Rapsyn_N: Rapsyn N-te 66.8 35 0.00075 29.8 7.5 58 571-628 12-72 (80)
387 PF10516 SHNi-TPR: SHNi-TPR; 65.4 9.9 0.00021 28.1 3.5 28 59-87 3-30 (38)
388 PF04190 DUF410: Protein of un 64.6 2.3E+02 0.0049 31.3 21.9 27 520-546 88-114 (260)
389 PF07720 TPR_3: Tetratricopept 64.0 21 0.00045 26.0 5.0 10 71-80 14-23 (36)
390 PF12854 PPR_1: PPR repeat 64.0 13 0.00028 26.6 3.9 24 567-590 9-32 (34)
391 COG5536 BET4 Protein prenyltra 63.6 67 0.0014 35.1 10.6 124 77-200 93-233 (328)
392 KOG1463 26S proteasome regulat 62.6 2.7E+02 0.0059 31.5 28.2 185 422-648 132-328 (411)
393 KOG3584 cAMP response element 62.2 3.7 8E-05 43.8 1.2 13 949-961 309-321 (348)
394 PF01535 PPR: PPR repeat; Int 62.1 11 0.00025 25.5 3.4 29 567-595 2-30 (31)
395 PF12854 PPR_1: PPR repeat 60.2 15 0.00033 26.2 3.8 28 598-625 6-33 (34)
396 KOG4014 Uncharacterized conser 59.6 2.1E+02 0.0046 29.3 15.6 156 54-224 31-198 (248)
397 KOG2581 26S proteasome regulat 58.6 3.5E+02 0.0075 31.4 18.6 123 35-159 139-280 (493)
398 PF10373 EST1_DNA_bind: Est1 D 58.1 31 0.00067 38.3 7.9 61 77-137 1-61 (278)
399 smart00386 HAT HAT (Half-A-TPR 57.9 18 0.00039 24.7 3.9 27 432-458 1-27 (33)
400 PF04190 DUF410: Protein of un 57.8 3E+02 0.0064 30.4 21.1 91 190-289 136-241 (260)
401 TIGR00756 PPR pentatricopeptid 56.9 23 0.0005 24.5 4.4 29 567-595 2-30 (35)
402 PF10373 EST1_DNA_bind: Est1 D 56.4 32 0.0007 38.1 7.6 62 42-104 1-62 (278)
403 KOG0889 Histone acetyltransfer 56.3 9.9E+02 0.021 36.0 27.7 80 417-496 2811-2897(3550)
404 PF09670 Cas_Cas02710: CRISPR- 55.8 1.6E+02 0.0034 34.5 13.3 60 26-87 135-198 (379)
405 PF13041 PPR_2: PPR repeat fam 55.4 49 0.0011 25.7 6.4 31 417-447 2-32 (50)
406 smart00386 HAT HAT (Half-A-TPR 55.3 26 0.00055 23.9 4.3 23 74-96 3-25 (33)
407 COG3947 Response regulator con 54.6 1E+02 0.0023 33.9 10.3 60 162-221 281-340 (361)
408 PF13812 PPR_3: Pentatricopept 53.8 32 0.00068 23.9 4.6 30 567-596 3-32 (34)
409 PF09670 Cas_Cas02710: CRISPR- 53.1 2.9E+02 0.0063 32.3 14.9 132 129-267 134-273 (379)
410 KOG2581 26S proteasome regulat 52.3 4.4E+02 0.0095 30.7 18.1 123 71-193 139-280 (493)
411 KOG1920 IkappaB kinase complex 52.1 7.2E+02 0.016 33.1 19.5 91 565-668 939-1029(1265)
412 PF10255 Paf67: RNA polymerase 50.0 22 0.00048 41.4 5.0 63 567-630 124-195 (404)
413 KOG2063 Vacuolar assembly/sort 49.6 7.2E+02 0.016 32.4 19.4 29 194-222 684-712 (877)
414 PF12739 TRAPPC-Trs85: ER-Golg 48.0 5.4E+02 0.012 30.5 17.5 158 95-266 211-401 (414)
415 smart00299 CLH Clathrin heavy 48.0 2.7E+02 0.0058 27.0 15.1 31 72-102 21-51 (140)
416 COG4455 ImpE Protein of avirul 47.6 3.7E+02 0.0081 28.6 12.5 56 103-158 12-67 (273)
417 COG4941 Predicted RNA polymera 47.3 4.7E+02 0.01 29.6 17.1 122 140-262 270-399 (415)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 46.2 2.8E+02 0.0061 26.7 11.4 33 412-444 93-125 (126)
419 KOG0686 COP9 signalosome, subu 45.9 99 0.0021 35.6 8.9 97 523-626 151-256 (466)
420 PF12739 TRAPPC-Trs85: ER-Golg 44.6 5.8E+02 0.013 30.2 16.0 28 25-53 211-238 (414)
421 COG5536 BET4 Protein prenyltra 44.5 3.6E+02 0.0077 29.7 12.3 127 108-234 90-233 (328)
422 PRK12798 chemotaxis protein; R 44.3 5.9E+02 0.013 29.9 22.9 191 28-224 86-287 (421)
423 COG4455 ImpE Protein of avirul 44.1 1.4E+02 0.003 31.7 8.8 61 168-228 9-69 (273)
424 KOG2114 Vacuolar assembly/sort 43.7 2E+02 0.0044 36.3 11.6 163 39-220 350-516 (933)
425 KOG0546 HSP90 co-chaperone CPR 42.9 35 0.00076 38.5 4.8 74 131-204 280-353 (372)
426 PF11817 Foie-gras_1: Foie gra 42.5 1.5E+02 0.0032 32.4 9.9 60 161-220 179-244 (247)
427 PF10255 Paf67: RNA polymerase 42.5 38 0.00081 39.6 5.3 59 95-153 125-191 (404)
428 PF01535 PPR: PPR repeat; Int 42.0 36 0.00079 22.9 3.3 26 421-446 3-28 (31)
429 smart00101 14_3_3 14-3-3 homol 41.7 5E+02 0.011 28.3 22.0 57 163-219 4-64 (244)
430 KOG0546 HSP90 co-chaperone CPR 40.2 56 0.0012 36.9 5.8 76 162-237 277-352 (372)
431 smart00101 14_3_3 14-3-3 homol 39.6 5.4E+02 0.012 28.1 16.7 58 421-478 4-64 (244)
432 KOG4279 Serine/threonine prote 37.3 1.8E+02 0.004 36.0 9.8 102 432-546 257-368 (1226)
433 smart00299 CLH Clathrin heavy 36.9 4E+02 0.0086 25.8 15.2 46 34-82 19-64 (140)
434 cd02682 MIT_AAA_Arch MIT: doma 36.4 2.5E+02 0.0054 24.4 7.9 46 235-280 6-51 (75)
435 KOG0687 26S proteasome regulat 35.8 7E+02 0.015 28.3 16.9 114 521-637 103-219 (393)
436 cd02682 MIT_AAA_Arch MIT: doma 35.6 1.7E+02 0.0038 25.4 6.9 43 460-530 13-55 (75)
437 KOG2114 Vacuolar assembly/sort 35.0 1.1E+03 0.024 30.3 17.5 175 426-625 342-516 (933)
438 KOG0567 HEAT repeat-containing 35.0 6.5E+02 0.014 27.7 16.5 164 74-243 65-249 (289)
439 PF14863 Alkyl_sulf_dimr: Alky 34.7 1.5E+02 0.0032 29.3 7.3 50 194-243 70-119 (141)
440 PF09797 NatB_MDM20: N-acetylt 34.1 1.6E+02 0.0034 34.3 8.9 109 76-184 201-310 (365)
441 smart00777 Mad3_BUB1_I Mad3/BU 33.8 1.7E+02 0.0037 28.2 7.3 77 542-624 46-124 (125)
442 PRK11619 lytic murein transgly 33.6 1.1E+03 0.024 29.9 38.1 210 424-659 247-460 (644)
443 KOG0686 COP9 signalosome, subu 33.3 2.2E+02 0.0047 33.0 9.1 94 94-187 152-256 (466)
444 TIGR00756 PPR pentatricopeptid 33.2 73 0.0016 21.8 3.8 26 421-446 3-28 (35)
445 PF14863 Alkyl_sulf_dimr: Alky 32.2 1.3E+02 0.0027 29.8 6.3 43 131-173 75-117 (141)
446 PF10952 DUF2753: Protein of u 31.3 2.6E+02 0.0056 26.8 7.7 68 525-592 4-77 (140)
447 COG5187 RPN7 26S proteasome re 31.0 7.7E+02 0.017 27.4 12.6 110 521-633 114-226 (412)
448 PF09205 DUF1955: Domain of un 31.0 2.1E+02 0.0045 27.9 7.2 134 463-627 12-148 (161)
449 KOG4279 Serine/threonine prote 30.9 2.4E+02 0.0052 35.1 9.4 31 207-237 379-409 (1226)
450 PF04212 MIT: MIT (microtubule 30.5 3.3E+02 0.0071 22.9 8.4 41 234-274 4-44 (69)
451 KOG1497 COP9 signalosome, subu 30.1 8.4E+02 0.018 27.5 18.9 100 524-627 105-212 (399)
452 PF02184 HAT: HAT (Half-A-TPR) 29.9 99 0.0021 22.0 3.6 26 469-494 3-28 (32)
453 COG3014 Uncharacterized protei 29.1 5.9E+02 0.013 28.9 11.2 109 42-155 40-154 (449)
454 KOG0687 26S proteasome regulat 28.8 6.1E+02 0.013 28.7 11.2 103 160-266 104-212 (393)
455 KOG2063 Vacuolar assembly/sort 28.6 1.4E+03 0.031 29.8 18.5 112 129-240 507-638 (877)
456 PF13812 PPR_3: Pentatricopept 27.6 1.3E+02 0.0027 20.7 4.2 27 420-446 3-29 (34)
457 PF04090 RNA_pol_I_TF: RNA pol 26.8 7.6E+02 0.017 25.9 11.4 58 60-118 44-102 (199)
458 COG5187 RPN7 26S proteasome re 26.7 9.2E+02 0.02 26.8 12.7 99 126-224 115-222 (412)
459 KOG1497 COP9 signalosome, subu 26.5 9.7E+02 0.021 27.1 15.8 96 562-658 100-204 (399)
460 COG3107 LppC Putative lipoprot 25.7 7.7E+02 0.017 29.8 12.0 75 405-479 49-125 (604)
461 PF11846 DUF3366: Domain of un 25.5 1.9E+02 0.0042 30.0 6.9 46 404-450 131-176 (193)
462 KOG4521 Nuclear pore complex, 25.3 1.3E+03 0.028 30.8 14.6 128 95-226 986-1135(1480)
463 TIGR02710 CRISPR-associated pr 24.8 1E+03 0.022 27.9 12.8 54 98-151 136-196 (380)
464 PRK09979 putative rho operon l 24.4 29 0.00062 23.2 0.3 7 1157-1163 10-16 (33)
465 KOG0276 Vesicle coat complex C 24.4 3.8E+02 0.0083 32.7 9.4 79 94-188 616-694 (794)
466 KOG2758 Translation initiation 24.1 1.1E+03 0.023 26.7 15.7 185 41-228 113-322 (432)
467 KOG2561 Adaptor protein NUB1, 24.1 1.1E+03 0.023 27.9 12.4 36 232-267 160-195 (568)
468 PF05053 Menin: Menin; InterP 23.5 7.5E+02 0.016 30.2 11.5 69 520-592 275-345 (618)
469 KOG4151 Myosin assembly protei 23.1 2.4E+02 0.0053 35.4 7.9 98 133-230 60-163 (748)
470 PF06957 COPI_C: Coatomer (COP 22.7 5.8E+02 0.013 30.2 10.5 28 603-630 208-235 (422)
471 PRK09687 putative lyase; Provi 21.9 1.1E+03 0.024 26.1 27.5 200 8-223 25-234 (280)
472 TIGR02269 Myxococcus xanthus p 21.9 42 0.0009 34.0 1.0 48 1004-1051 3-53 (211)
473 TIGR02710 CRISPR-associated pr 21.9 1.3E+03 0.028 26.9 13.2 54 63-117 136-196 (380)
474 PF09205 DUF1955: Domain of un 21.6 7.8E+02 0.017 24.2 12.2 52 171-222 97-148 (161)
475 PF13226 DUF4034: Domain of un 21.4 7.3E+02 0.016 27.6 10.5 35 177-211 116-150 (277)
476 KOG4814 Uncharacterized conser 21.3 1.6E+03 0.036 27.9 38.5 90 132-221 360-455 (872)
477 PRK15490 Vi polysaccharide bio 21.3 9.5E+02 0.021 29.7 12.3 79 138-218 20-98 (578)
478 PF04348 LppC: LppC putative l 21.0 32 0.0007 42.2 0.0 94 58-152 25-124 (536)
479 PF14929 TAF1_subA: TAF RNA Po 20.8 1.6E+03 0.035 27.6 15.3 138 434-591 300-438 (547)
480 PF04212 MIT: MIT (microtubule 20.7 1.9E+02 0.0042 24.3 4.7 29 525-553 8-36 (69)
481 COG3014 Uncharacterized protei 20.7 1.3E+03 0.028 26.4 16.2 43 7-50 40-85 (449)
482 cd02683 MIT_1 MIT: domain cont 20.6 5.5E+02 0.012 22.3 7.6 39 238-276 9-47 (77)
483 PF07219 HemY_N: HemY protein 20.2 3.7E+02 0.0081 25.0 7.0 48 567-614 61-108 (108)
484 PF11846 DUF3366: Domain of un 20.2 3.4E+02 0.0073 28.2 7.6 45 78-123 131-175 (193)
485 PF12554 MOZART1: Mitotic-spin 20.1 87 0.0019 24.6 2.1 24 1048-1071 25-48 (48)
No 1
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=100.00 E-value=7.3e-69 Score=620.11 Aligned_cols=1094 Identities=38% Similarity=0.540 Sum_probs=778.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--ccCCHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR--FSIDTQRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~~g~~~eA~~~~ 81 (1173)
++.|++..+++++.+|++..+++.+|..++..+++.++|.+.|..+.+++|++.-+|..++..|.. -..+++++-.+|
T Consensus 18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~y 97 (1238)
T KOG1127|consen 18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCY 97 (1238)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHH
Confidence 344599999999999999999999999999999889999999999999999999999999999987 134578899999
Q ss_pred HHHHhhCCCCH-HHHHHHHHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 82 QRAVSLSPDDS-VSGEALCELLEHG-----------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 82 ~~al~~~p~~~-~a~~~La~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++++...|+.. .-+..+...+-.+ ....+-..+-+...+.+|.-.+++..++.+......++.+.+..
T Consensus 98 q~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~~k~~a~~rl~Qi~l~~~~wei~k~S~ 177 (1238)
T KOG1127|consen 98 QRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNPKKFWAFCRLGQIQLHQKKWEIAKQSL 177 (1238)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCHHHHHhhCchHHHHhhhhhHHHHhcCH
Confidence 99988877654 3333333222211 11222222333556667777888999999999999999999999
Q ss_pred HHHHHhCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH--------HHcCChHHHHHH
Q 045024 150 QHAIRGYPTSPHLWE-----ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF--------LMLGNFRKGVEQ 216 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~--------~~~g~~~~A~~~ 216 (1173)
+.++...|.+...+- ..+..|...+.+-.+...+.+.++..-....+.+.-+..| ..-.+.++..++
T Consensus 178 q~~lynq~~n~~l~D~irse~e~~ly~~~~m~l~~kkh~~~rik~~~egMv~l~~~~q~yfEwld~~di~~~~t~e~q~Y 257 (1238)
T KOG1127|consen 178 QHALYNQPTNSDLWDKIRSEAEGLLYQRLGMFLAAKKHYGRRIKLDEEGMVALVESAQYYFEWLDSHDIEGNLTDEGQQY 257 (1238)
T ss_pred HHHHhcchhhhcchhhcchhHHHHHHHHhhhhHhhhhhHHHHHHHHHhchheechhhhhhhhhhhhhhhcccccHHHHHH
Confidence 999888887665554 6677788889998898888888776543222222112222 222333455555
Q ss_pred HHHHHhh----------cCCCHHHHHHHHHHHHHHH-----HHHHH-hhcHHHHHHHHHHHHHHHHHHh-------hhcC
Q 045024 217 FQLALKI----------SSENVSAHYGLASGLLGLA-----KQCIN-LGAFRWGASLLEDACKVAEANT-------RLAG 273 (1173)
Q Consensus 217 ~~~al~~----------~p~~~~a~~~la~~~~~l~-----~~~~a-~g~~~~A~~~l~~Al~~~~~~~-------~~~~ 273 (1173)
++..... .|.+....+.++....... ..+.. .+.+++|....++..+...... ....
T Consensus 258 ~k~fpg~pla~~l~~i~hpi~~~~~~~~a~~~~n~~E~d~se~cv~~k~~~eea~s~~e~p~davla~s~ea~~v~~l~~ 337 (1238)
T KOG1127|consen 258 RKVFPGVPLAEQLLKISHPINISVLYGLASGLLNLTELDWSEECVNLKGAFEEAASLLEDPRDAVLASSEEASSVSNLGA 337 (1238)
T ss_pred HHhcCCCchHHHHHHhcCCccHHhhcchhhhhhccchhhcchhhhcccchhHHHHHhhhccHHHHHhhhhHHhhhccchh
Confidence 4443211 1322222223333322111 11111 1445556555554444332221 1111
Q ss_pred ChHHHHH---HhchHHHHH---hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 045024 274 NMSCIWK---LHGDIQLTY---AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTD 347 (1173)
Q Consensus 274 ~~~~~~~---~~g~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 347 (1173)
.....|. ..++.+... ..++++......-.+........++.+...++...-.|-..++++..+.|.....|..
T Consensus 338 ~i~~c~~~~lLhlKeye~a~~~~~~~~~d~gv~Ld~~tl~laiP~~l~~as~~Ydn~lSaD~sn~~akgl~~ie~~~y~D 417 (1238)
T KOG1127|consen 338 SINCCWKRNLLHLKEYETAKLSARCFPWDGGVELDEFTLKLAIPSILSWASICYDNALSADASNQRAKGLAPIEANVYTD 417 (1238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHhhCcccchhhhhhcCcHHHHHHHHHHHHhhcCChhhhhhcchhHHHHhhchH
Confidence 2223333 444444443 4455555544433333344444455544444433333333334444444444444555
Q ss_pred HHHHHHHHhhHHHhh-hhhhhhhHHH---HHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHH
Q 045024 348 IAITSDLIYSLNEAY-GHYQSAWHVS---EKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAH 423 (1173)
Q Consensus 348 la~~~~~~g~~~eA~-~~~~~~~~~A---~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~ 423 (1173)
.+.++.......... ...+-.|-.+ +++..-+.-........|..++.+-.+...+.++|.+++.++|.-+.+|..
T Consensus 418 aa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~ 497 (1238)
T KOG1127|consen 418 AAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAF 497 (1238)
T ss_pred HHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHH
Confidence 444443322221100 1112223333 333333333444456667777777778888999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCC
Q 045024 424 IGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 424 Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~ 503 (1173)
||.+|....+...|..+|++|.++||.+..++-. .+..|.+..++++|.....++-+..|-.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa-~adtyae~~~we~a~~I~l~~~qka~a~----------------- 559 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAA-SADTYAEESTWEEAFEICLRAAQKAPAF----------------- 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHH-HHHHhhccccHHHHHHHHHHHhhhchHH-----------------
Confidence 9999999999999999999999999999999999 8899999999999999866665555411
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALD 583 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~e 583 (1173)
.....|..+|..|...++...|+..|+.++ ..+|. ....|..+|.+|.+.|++..
T Consensus 560 ----------------~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPk------D~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 560 ----------------ACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPK------DYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred ----------------HHHhhhhhccccccCccchhhHHHHHHHHh---cCCch------hHHHHHHHHHHHHhcCceeh
Confidence 012233446777777778888888888774 33333 33477788888888888888
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcccc--ccchhhhhHHHHHHHHHHhcChhhhhHHh
Q 045024 584 AVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAM--EQSSAAASVSFICRLLYHISGLDSTINSI 661 (1173)
Q Consensus 584 Ai~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~--~~~~~~~~~~~la~l~~~~g~~~~A~~~l 661 (1173)
|++.|.++...+|.+..+.+..+.+....|+|.+|+..++..+...... .+....+.+..++..++..|-...+.+.+
T Consensus 615 AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 615 ALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 8888888877788887777777888888888888888777766543311 11122344455555555555444444333
Q ss_pred hhCCCCccccchhHHHHHHhhhccCccchHHHHhc-cccc-ccCCccchhhHHHHHHHHhhhCCCC----C--ccccchh
Q 045024 662 LKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSS-SRNC-IASPEEITGMHYLVALNKLVKNGPE----S--CLGFNSG 733 (1173)
Q Consensus 662 ~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~-~~~~-~~~~~~~a~~~~l~a~~~~~~~~~~----~--~~~~~~A 733 (1173)
++ +...+.......+..+.-.-..+.. .... ...|+ .+.+|++..+.....+... . .++++-.
T Consensus 695 ek--------sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 695 EK--------SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HH--------HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence 33 2222222222221111111111111 0001 11133 6677877777663222221 1 2345677
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhhhhhccccCCCcccccCCCcchhHHhhc-cceeeeeccccccccc
Q 045024 734 IFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSDCIKKEGPKSAWEILGA-EGVACNVIGSVDLKFS 812 (1173)
Q Consensus 734 i~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~a~ra~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 812 (1173)
+.++..+.+++|......+-+..++.-.....+...|.+|+..+..-.+++.++..+..|+.- ..+.|..-+.+-++|+
T Consensus 766 ~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 766 IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhc
Confidence 888888888777665555555555554455555578999999888888888887777777733 6677777777788899
Q ss_pred CccccccccCChhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHhcccccccchhhhhHHH
Q 045024 813 FPTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQK 892 (1173)
Q Consensus 813 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1173)
+|+|..+..|-..-.-..++.-|.+|-+..++++...+.|+..++..+|.++|||+++......|+++.+.++ .+.+
T Consensus 846 ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g---ka~~ 922 (1238)
T KOG1127|consen 846 EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG---KAKK 922 (1238)
T ss_pred cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc---ccch
Confidence 9999998888532233357888889999999999999999999999999999999999999999999777664 6789
Q ss_pred HHHHHhhhhhccccCccchHHHHHHHhhccCCcchhhhhHHHHHHHHHHhhCCchhhHHHHHHHHhhcccchhhHHHHHH
Q 045024 893 FQLLLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGWMCLKV 972 (1173)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1173)
|+.|+|.+++++|.|+++.-|+++.|+.+...+..+-|-.|.++|+||.+.|.+.+...||..|+++.|+ .|||+++|+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R-liglLe~k~ 1001 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR-LIGLLELKL 1001 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhc-ccccccccccchHHHHhcCCCcchhHHHHHHHHhhhhhhc--ccccccHHHHHHHHhhhcCCCce--eehhcc
Q 045024 973 VESLYE-VQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLW--KKDFFSAEKCLAQACSLAGAESC--LFLCHG 1047 (1173)
Q Consensus 973 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 1047 (1173)
-+++++ ..++-+.+++++++|-+.++++++.||++.+...|..+.- .+||+++++++.||||..+.++| +++|||
T Consensus 1002 d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1002 DESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 999999 7889999999999999999999999999999999998887 99999999999999999999999 999999
Q ss_pred hhHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccchHHHHHHhhhcCCCcHHHHHHhhhhhhccCCCCCCchhHHHHHHH
Q 045024 1048 TICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHL 1127 (1173)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1173)
++||+.+|+..+++|+.-.+++++++|-.|+.+||.|++|.++|++|.|++++|+|++++|||+|||...--++
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i------ 1155 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELI------ 1155 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999997654443
Q ss_pred HHhhhhcCCCCCCccccccchhHHHHHHhhcCcchhhHHHHHH
Q 045024 1128 LAMLSKAGSDSSSRVEFCQSPQKWVLRAIHTNPSCLRYWKVLH 1170 (1173)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1170 (1173)
+++|-.... -.+=+.|+.|-||-=..-|..|.
T Consensus 1156 ~~~~~r~~~-----------vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1156 YALQGRSVA-----------VKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHhhhhHH-----------HHHHHHHHHhcCCCChHHHHHHH
Confidence 455543222 23457899999999999999874
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.1e-50 Score=524.08 Aligned_cols=871 Identities=17% Similarity=0.111 Sum_probs=682.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.++..++..|..++.+|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..++++++..|.+......++
T Consensus 20 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~a 97 (899)
T TIGR02917 20 QSPESLIEAAKSYLQKNK-YKAAIIQLKNALQKDPNDAEARFLLGKIYLA-LGDYAAAEKELRKALSLGYPKNQVLPLLA 97 (899)
T ss_pred CCHHHHHHHHHHHHHcCC-hHhHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCChhhhHHHHH
Confidence 378889999999999987 9999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 100 ELLEHGGKESLEVVVCREAS-DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
.++...|++++|+..+.++. ...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 98 RAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHH
Confidence 99999999999999998775 34556778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
|++.++++++.+|.+..++..+|.++...|++++|+..|+++++.+|+++..+..++.++...|+ +++|...+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~-------~~~A~~~~ 250 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE-------FEEAEKHA 250 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888877665 55555555
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcC
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA 338 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 338 (1173)
+.+++. .+.....+...+.+.. ..+++++|+..|+++++.+
T Consensus 251 ~~~~~~-------~~~~~~~~~~~~~~~~--------------------------------~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 251 DALLKK-------APNSPLAHYLKALVDF--------------------------------QKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHh-------CCCCchHHHHHHHHHH--------------------------------HhcCHHHHHHHHHHHHHhC
Confidence 554443 3333333333332222 2344678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCC
Q 045024 339 PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDV 415 (1173)
Q Consensus 339 p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p 415 (1173)
|++...+..+|.++...|++++| ...+.+++...|.+...+..++.++. +...+...+.+++..+|
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A-----------~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 360 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQA-----------YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99998999999999999999887 45567888889999988888888776 55577788999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AEFQIGLAK 494 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~ 494 (1173)
.++.++..+|.++...|++++|...|+++++.+|+++..+.. .+.++...|++++|+..++++++..|. ......++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ-LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 999999999999999999999999999999999999988888 677888999999999999999999884 345555666
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHH
Q 045024 495 LAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARS 574 (1173)
Q Consensus 495 l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~ 574 (1173)
.....|+ .++|+..+++.+...|+++.++..+|.++...|++++|+..|+++++. .|+ ...+++.+|.+
T Consensus 440 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~------~~~~~~~la~~ 508 (899)
T TIGR02917 440 SYLRSGQ--FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPD------FFPAAANLARI 508 (899)
T ss_pred HHHhcCC--HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCC------cHHHHHHHHHH
Confidence 6666666 578999999999999999999999999999999999999999998643 333 34488999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcCh
Q 045024 575 LSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGL 654 (1173)
Q Consensus 575 ~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~ 654 (1173)
+...|++++|++.|+++++.+|.+..++..++.++...|++++|+..|+++++..| ........++.++...|+.
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-----QEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----cchhHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999998776 3446777889999999999
Q ss_pred hhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhH
Q 045024 655 DSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGI 734 (1173)
Q Consensus 655 ~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai 734 (1173)
++|...+++.......+......++.+. ...++..+++..........+.....+..++......++. ++|+
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~ 655 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQ--LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY------AKAI 655 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH------HHHH
Confidence 9999766665443323334444443332 2345555565553222221222234455566666656665 8999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhh-hhhccccCCCcccccCCCcchhHHhhccceeeeecccccccccC
Q 045024 735 FHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHV-ASRCCSLETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSF 813 (1173)
Q Consensus 735 ~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~-a~ra~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1173)
..+++++..+|+++..+..++.++...|+++.+.. ..+.....|.++... ..+ ..++......
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~g~~----- 719 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF-------ELE----GDLYLRQKDY----- 719 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH-------HHH----HHHHHHCCCH-----
Confidence 99999999999999999999999999999876664 333333444333221 111 0011111111
Q ss_pred ccccccccCChhHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHhcccccccchhhhhHHHH
Q 045024 814 PTCIYEHLTGPKAVQELQKCLHREPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKF 893 (1173)
Q Consensus 814 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1173)
++|+..+.+++...|.+ ++.+.++..+....+.+++-..+.++++. ++ .+ .
T Consensus 720 ----------~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~~---~~--------~ 770 (899)
T TIGR02917 720 ----------PAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-------HP---ND--------A 770 (899)
T ss_pred ----------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CC---CC--------H
Confidence 45899999999999988 67777777777777666665555544432 11 11 2
Q ss_pred HHHHhhhhhccccCccchHHHHHHHhhccCCcchhhhhHHHHHHHHHHhhCCchhhHHHHHHHHhhcccchhhHHHHHHH
Q 045024 894 QLLLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELKTDYVIGWMCLKVV 973 (1173)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1173)
..+...++++.+.|+++.|+++.++++..++++. .++..|.++|...|+ ..-.+-|.+-+++.+|...-|..+-.+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA---VVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3467788899999999999999999998887653 345567888888998 777777888888777765444444333
Q ss_pred HhhhcccccccccccchHHHHhcCCCcchhHHHHHHHHhhhhhhcccccccHHHHHHH
Q 045024 974 ESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKKDFFSAEKCLAQ 1031 (1173)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1173)
. --.++-+.-.-.|+.+++....++.. .+++ |.++...|++..|++.+-.
T Consensus 847 ~---~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~l--~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 847 L---VEKGEADRALPLLRKAVNIAPEAAAI---RYHL--ALALLATGRKAEARKELDK 896 (899)
T ss_pred H---HHcCCHHHHHHHHHHHHhhCCCChHH---HHHH--HHHHHHcCCHHHHHHHHHH
Confidence 2 22344444445688888877654433 3333 5567778888888877654
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-49 Score=520.12 Aligned_cols=614 Identities=16% Similarity=0.095 Sum_probs=411.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++..|.+...+..+|.++.. .|++++|+..+.++.
T Consensus 40 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~a~~~~~~~~ 117 (899)
T TIGR02917 40 AAIIQLKNALQKDPNDAEARFLLGKIYLALGD-YAAAEKELRKALSLGYPKNQVLPLLARAYLL-QGKFQQVLDELPGKT 117 (899)
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCChhhhHHHHHHHHHH-CCCHHHHHHhhcccc
Confidence 35999999999999999999999999999987 9999999999999999999999999999999 999999999998765
Q ss_pred -hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 86 -SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 86 -~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 197 (899)
T TIGR02917 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197 (899)
T ss_pred cCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 3456667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQ 244 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~ 244 (1173)
.+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|...++++++..|+++...+..+.++...|
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 275 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK-- 275 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999998887777776666554
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHH
Q 045024 245 CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAA 324 (1173)
Q Consensus 245 ~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (1173)
++++|...++++++..+.........+..+...|+...+...+.......+. ...............++.
T Consensus 276 -----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 276 -----NYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-----SHQARRLLASIQLRLGRV 345 (899)
T ss_pred -----CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHCCCH
Confidence 4666666666665543322111111122222222222221111111000000 000011112222333445
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccH
Q 045024 325 ISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNG 401 (1173)
Q Consensus 325 ~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~ 401 (1173)
++|+..+++++...|.++.++..++.++...|++++| .+.+.+++...|++...+..+|.++. +..
T Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA-----------AEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 5555555555555555555555555555555555554 33344555555555555555555444 333
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
.+.+.|.+++..+|+...+...++..+...|++++|+..+++.....|+++..+.. .+.++...|++++|+..|+++++
T Consensus 415 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-LGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHhCCCHHHHHHHHHHHHh
Confidence 45555555555555555555555555555556666655555555555555555554 44455555566666666665555
Q ss_pred cCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 045024 482 ILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVP 560 (1173)
Q Consensus 482 ~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~ 560 (1173)
.+|. ....+.++.+....|+ .++|...+++++..+|++..++..++.++...|++++|+..|++++.. .|++
T Consensus 494 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-- 566 (899)
T TIGR02917 494 IEPDFFPAAANLARIDIQEGN--PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQE-- 566 (899)
T ss_pred hCCCcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cccc--
Confidence 5552 3344445555444444 345555555555555555555555565555556666666655555322 2222
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhh
Q 045024 561 NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAAS 640 (1173)
Q Consensus 561 ~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~ 640 (1173)
...+..++..+...|++++|+..++++.+..|.++..+..+|.++...|++++|+..|+++++..| ..+..
T Consensus 567 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ 637 (899)
T TIGR02917 567 ----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----DSALA 637 (899)
T ss_pred ----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CChHH
Confidence 124555555555566666666666555555555555555556666666666666666665555444 22344
Q ss_pred HHHHHHHHHHhcChhhhhHHh
Q 045024 641 VSFICRLLYHISGLDSTINSI 661 (1173)
Q Consensus 641 ~~~la~l~~~~g~~~~A~~~l 661 (1173)
+..++.++...|+.++|...+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555555333
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3e-42 Score=381.27 Aligned_cols=455 Identities=19% Similarity=0.229 Sum_probs=276.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
...++.-.++.|+ |.+|.++...+-..+|.+.+.+..++.++++ ..+++.....-..+++.+|...+++..+|.++..
T Consensus 51 ~l~lah~~yq~gd-~~~a~~h~nmv~~~d~t~~~~llll~ai~~q-~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGD-YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQ-GSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccC-HHHHHHHHhHhhccCCCcccceeeehhhhhc-ccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4444444444443 5555555555555555555555555555555 5555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
.|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+.++|..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 185 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
++++..|....+|.++|-++..+|+...|+..|+++++++|...++++++|.+|...+.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~--------------------- 267 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI--------------------- 267 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc---------------------
Confidence 55555555555555555555555555555555555555555555555555555544333
Q ss_pred HHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHH
Q 045024 265 AEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANI 344 (1173)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 344 (1173)
++.|+.+|.+++.+.|+++.+
T Consensus 268 -----------------------------------------------------------~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 268 -----------------------------------------------------------FDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred -----------------------------------------------------------chHHHHHHHHHHhcCCcchhh
Confidence 123334444444444444444
Q ss_pred HHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHH
Q 045024 345 YTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHI 424 (1173)
Q Consensus 345 ~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~L 424 (1173)
+-+++.+|..+|..+ .|+.+|+++++++|+.++++.+|
T Consensus 289 ~gNla~iYyeqG~ld------------------------------------------lAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLD------------------------------------------LAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred ccceEEEEeccccHH------------------------------------------HHHHHHHHHHhcCCCchHHHhHH
Confidence 444444444433333 34445555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCC
Q 045024 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~l~~~~g~~~ 503 (1173)
|..+...|+..+|..+|.+++.+.|+++++..+ ++.++...|..++|..+|.++++..|. ....-.++.++..+|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~N-Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl- 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNN-LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL- 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH-
Confidence 555555555555555555555555555555555 444555555555555555555555553 23344444444444442
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALD 583 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~e 583 (1173)
++|+..|+.++.+.|....++.++|..|..+|+.+.|+..|++|+.. +|.+++++.+||.+|...|+..+
T Consensus 405 -~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~---------nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 405 -DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI---------NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred -HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc---------CcHHHHHHhhHHHHhhccCCcHH
Confidence 35555666666666788889999999999999999999999999654 67788899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 584 AVRECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 584 Ai~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
||..|+.+++..|+.++++.+++.++.-.-++
T Consensus 475 AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999999999998888776655444
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-41 Score=373.57 Aligned_cols=456 Identities=16% Similarity=0.164 Sum_probs=417.2
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
+........++.-.++ .|+|.+|++....+-..+|.+.+....++.++++..+++.....-..+++.+|.-.+++.++|
T Consensus 45 ~~~~~~~l~lah~~yq-~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQ-GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHh-ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHH
Confidence 3334557788888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
.++...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
...|.++++..|....+|..+|-++...|+
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge-------------------------------------------------- 233 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQGE-------------------------------------------------- 233 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhcch--------------------------------------------------
Confidence 999999999999888888888887777666
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSE 373 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~ 373 (1173)
...|+..|+++++++|..+++|.++|.+|...+.++.|
T Consensus 234 ------------------------------i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A------------ 271 (966)
T KOG4626|consen 234 ------------------------------IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA------------ 271 (966)
T ss_pred ------------------------------HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH------------
Confidence 12577888999999999999999999999877777766
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 374 KMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 374 k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
..+|.+++.+.|+.+.++-++|.+|..+|..+-|+..|+++++++|+.++
T Consensus 272 ------------------------------vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 272 ------------------------------VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred ------------------------------HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 45899999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 454 PWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC 532 (1173)
Q Consensus 454 a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~ 532 (1173)
++.+ ++.++...|+..+|.++|.+++.+.| .++....++.++..+|.+ ++|...|.++++..|+...++.+||.+|
T Consensus 322 Ay~N-lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~--e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNN-LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI--EEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred HHhH-HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc--hHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 9999 77799999999999999999999999 578999999999999985 5999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 045024 533 EARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQL 612 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~ 612 (1173)
.++|++++|+..|+.++++ .|.+++++.++|..|..+|+.+.|++.|.+++..+|.-.++..++|.+|-..
T Consensus 399 kqqgnl~~Ai~~YkealrI---------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI---------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred HhcccHHHHHHHHHHHHhc---------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence 9999999999999999766 6789999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Q 045024 613 GKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY 649 (1173)
Q Consensus 613 g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~ 649 (1173)
|+..+|+..|+++|+..|+ .|++.+.++..+.
T Consensus 470 Gni~~AI~sY~~aLklkPD-----fpdA~cNllh~lq 501 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPD-----FPDAYCNLLHCLQ 501 (966)
T ss_pred CCcHHHHHHHHHHHccCCC-----CchhhhHHHHHHH
Confidence 9999999999999999994 4566665555443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-36 Score=402.82 Aligned_cols=597 Identities=12% Similarity=0.040 Sum_probs=329.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHH----------------HHHHHHHHHc
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF----------------RYLGHYYTRF 70 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~----------------~~lg~~~~~~ 70 (1173)
|.+.+.+++.++|+++.++..++.++...|+ +++|.+.++++++.+|+++.++ ..+|.++..
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~- 124 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT- 124 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh-
Confidence 4555666666666666666666666655555 5666666666666666655432 334445555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
.|++++|+..|+++++.+|.+... ...+..+....|++++|+..++++++.+|+++.++..+|.++...|++++|+..+
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 566666666666666555555432 1122222223455666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------------------HHHHHHHHHHHHcCC
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI--------------------FPLLESGNIFLMLGN 209 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------~a~~~la~~~~~~g~ 209 (1173)
++++...+....+-..........+....++..+...+...|+.. .....+|.++...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 665543332211110000001111222222222222222222221 111245888899999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
+++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|+++++..+..... ..|..+....
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-------~~eA~~~l~~Al~~~p~~~~~-----~~~~~ll~~~--- 349 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-------RARAVAQFEKALALDPHSSNR-----DKWESLLKVN--- 349 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCccch-----hHHHHHHHhh---
Confidence 9999999999999999999888888887777655 667777676666544322110 0010000000
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAW 369 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 369 (1173)
. .+............+++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 350 -~----------------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA-------- 404 (1157)
T PRK11447 350 -R----------------YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA-------- 404 (1157)
T ss_pred -h----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH--------
Confidence 0 000000111223345577899999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHhhc--ccHHHHHHHHHHHhcCC---------CcHHHHHHHHHHHHHcCCHHHHH
Q 045024 370 HVSEKMALGALLLEGDNCQFWVTLGCLSN--YNGLKQHALIRGLQLDV---------SLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 370 ~~A~k~~~~al~~~p~~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p---------~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
++.+++++..+|++..++..++.++. ..+.+...+.+.....+ -....+..+|.++...|++++|+
T Consensus 405 ---~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 405 ---ERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred ---HHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 45577888888888887777776653 22223222222111100 01123444555555555555555
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHH---
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQA--- 514 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~a--- 514 (1173)
..|+++++++|+++.+++. ++.++...|++++|+..|+++++..| .++..+.++.+....++ .++|+..++++
T Consensus 482 ~~~~~Al~~~P~~~~~~~~-LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~--~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 482 ELQRQRLALDPGSVWLTYR-LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR--DRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHhCCch
Confidence 5555555555555555555 44455555555555555555555555 23334443333322222 22333333322
Q ss_pred -------------------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCC
Q 045024 515 -------------------------------------IQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSG 557 (1173)
Q Consensus 515 -------------------------------------l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe 557 (1173)
++..|.++..+..+|.++...|++++|+..|+++++. .|+
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~ 635 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPG 635 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 2245666666666666666666666666666666432 232
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccc-h
Q 045024 558 TVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQS-S 636 (1173)
Q Consensus 558 ~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~-~ 636 (1173)
...++..++.+|...|++++|++.++++++..|+++..+..+|.++...|++++|++.|+++++..|..... .
T Consensus 636 ------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 636 ------NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 233666666666666666666666666666666666666666666666666666666666666644322111 1
Q ss_pred hhhhHHHHHHHHHHhcChhhhhHH
Q 045024 637 AAASVSFICRLLYHISGLDSTINS 660 (1173)
Q Consensus 637 ~~~~~~~la~l~~~~g~~~~A~~~ 660 (1173)
...++..++.++...|+.++|...
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344456666666666666643
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=9.9e-36 Score=393.67 Aligned_cols=658 Identities=12% Similarity=0.023 Sum_probs=420.7
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH---
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG--- 95 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~--- 95 (1173)
++..+.++..+.+...+++ .+.|.+.+++++.++|+++.++..++.++.. .|+.++|.+.++++++++|+++.++
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~-~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~-~g~~~~A~~~l~~l~~~~P~~~~~~~~~ 102 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHR-EDLVRQSLYRLELIDPNNPDVIAARFRLLLR-QGDSDGAQKLLDRLSQLAPDSNAYRSSR 102 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCC-hHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3445667888888877776 8999999999999999999999999999999 9999999999999999999987753
Q ss_pred -------------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 96 -------------EALCELLEHGGKESLEVVVCREASDKSPRAFWA-FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 96 -------------~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
+.+|.++...|++++|+..|+++++.+|.+... ......+....|++++|+..|+++++.+|+++.
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~ 182 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTG 182 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHH
Confidence 444556666677777777777776666655421 112222223346677777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++..+|.++...|++++|+..++++++..+....+-..........+....++..+...+...|+......
T Consensus 183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~--------- 253 (1157)
T PRK11447 183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA--------- 253 (1157)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH---------
Confidence 77777777777777777777777666543332211111111122234445555555555555555432210
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhh
Q 045024 242 AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL 321 (1173)
Q Consensus 242 ~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (1173)
+...+.+... ...+........ +......
T Consensus 254 ------------A~~~L~~~~~-------~~~dp~~~~~~~--------------------------------G~~~~~~ 282 (1157)
T PRK11447 254 ------------ARSQLAEQQK-------QLADPAFRARAQ--------------------------------GLAAVDS 282 (1157)
T ss_pred ------------HHHHHHHHHH-------hccCcchHHHHH--------------------------------HHHHHHC
Confidence 0000111000 000000000011 1122234
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHH--H---------
Q 045024 322 MAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF--W--------- 390 (1173)
Q Consensus 322 ~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~--~--------- 390 (1173)
+++++|+..|+++++.+|+++.++..+|.++...|++++| +..++++++.+|++... |
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA-----------~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARA-----------VAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 5577899999999999999999999999999999999998 45577888888876421 1
Q ss_pred ---HHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH
Q 045024 391 ---VTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464 (1173)
Q Consensus 391 ---~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~ 464 (1173)
..+|.++. +...|...|++++..+|+++.++..+|.+|...|++++|++.|+++++++|++..++.. ++.++
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~-L~~l~- 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG-LANLY- 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHH-
Confidence 12344443 56688899999999999999999999999999999999999999999999999988877 55465
Q ss_pred hcCCHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 465 SESLVDDAFESCLRAVQILPL----------AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA 534 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~p~----------~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~ 534 (1173)
..+++++|+..+++.....+. ...+..++......|+ .++|+..++++++.+|+++.+++.+|.++..
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--WAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345678887777654332211 1122334444445555 5688888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------HHHHHH
Q 045024 535 RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD----------AEVLQV 604 (1173)
Q Consensus 535 ~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~----------~~~~~~ 604 (1173)
.|++++|+..|+++++ ..|+++ .+++.++..+...|++++|+..++++......+ ....+.
T Consensus 508 ~G~~~~A~~~l~~al~---~~P~~~------~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 508 AGQRSQADALMRRLAQ---QKPNDP------EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred cCCHHHHHHHHHHHHH---cCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8888888888887753 333332 356666766677777777777776653221111 011234
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhh----HHhhhCCCCccccchhHHHHHH
Q 045024 605 YAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTI----NSILKMPKGLFQCSKMSFIVSA 680 (1173)
Q Consensus 605 la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~----~~l~~~p~~~~~~~~~~~~l~~ 680 (1173)
++.++...|++++|+..++ ..| .++.....++.++...|+.++|. +.++..|++. .....++.
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p-----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~----~a~~~la~ 645 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQP-----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA----DARLGLIE 645 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 5666666777777766655 123 23345566666677777776666 3333344433 33322322
Q ss_pred hhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhHHHHHHHHhcCCCcH------HHHHHH
Q 045024 681 IHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGIFHLRKVLHVYPNCN------LIRNLL 754 (1173)
Q Consensus 681 l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai~~l~k~l~~~P~~~------~~~~~L 754 (1173)
+ +...++..+|...+.......+.....+..++......++. ++|+..+++++...|+++ .++..+
T Consensus 646 ~--~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 646 V--DIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT------AAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred H--HHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH------HHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 2 22234444444442222222222223444455555555555 899999999999887654 467778
Q ss_pred HHHhccCCcccchhh-hhhccc---cCCCcccc
Q 045024 755 GYLLLSSDEWRYSHV-ASRCCS---LETSDCIK 783 (1173)
Q Consensus 755 a~ll~~~~~~~~a~~-a~ra~~---l~~~~~~~ 783 (1173)
|.++...|++..+.. .+++.. +.|..|.+
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 999999999876664 344432 55555554
No 8
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=352.38 Aligned_cols=688 Identities=18% Similarity=0.169 Sum_probs=521.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
.+.|...|-++++++|..+.++..+|.+|.. ..|...|.++|++|.+++|.+..+.-..+..|....+++.|....-.+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 6899999999999999999999999999999 889999999999999999999999999999999999999999998888
Q ss_pred HhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 119 SDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 119 l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
-+..|-. ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+..+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 7777753 45677799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhc-CCh
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA-GNM 275 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~-~~~ 275 (1173)
.+..+.+...+|+|.+|+..+...+............++.++++........|-..++.+.++++++.+.....-. ...
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999988888888999999999999999999999999999999999988766544 777
Q ss_pred HHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhh-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 045024 276 SCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCL-MAAISSKSSYQRALYLAPWQANIYTDIAITSDL 354 (1173)
Q Consensus 276 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~ 354 (1173)
...|...|+.....-...+-.....-+..-...+... ..... .-.--+.+++-..+++.. ++..|+++|..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~----~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT----GALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLR 787 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc----ccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHH
Confidence 8899999998876654331110000000000000000 00000 001123444444444433 26679999988875
Q ss_pred H-hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc--ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 045024 355 I-YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN--YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEV 431 (1173)
Q Consensus 355 ~-g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~ 431 (1173)
. -...+.. .....|+..+++++++..++..+|+.||.+.. +...++++|.+.+..+|.+...|.++|.++.+.
T Consensus 788 ~f~~l~et~----~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 788 YFLLLGETM----KDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHcCCcc----hhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 2 1111111 11256788899999999999999999999965 566899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC----chHHHHHHHHH--HHHhCCCC--
Q 045024 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP----LAEFQIGLAKL--AKLSGHLS-- 503 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p----~~~~~~~la~l--~~~~g~~~-- 503 (1173)
.+++.|...|.++..++|.+...|++ .+.+....|+.-++...|....++.. -+.+.+.+... ....|+..
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG-~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLG-EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHH-HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999999999999999999 45588899999999999998555422 23444444333 33333321
Q ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh
Q 045024 504 ------SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR 577 (1173)
Q Consensus 504 ------~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~ 577 (1173)
...|--.+++.+..+|++..++...|...+..+.+.+|.+.+.+.+.+++..-+ ...+..+.-+.|++++.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d---~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD---ESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhhh
Confidence 123555777888889999999999999999999999999999999988876432 22333477789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH---HhcCh
Q 045024 578 AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY---HISGL 654 (1173)
Q Consensus 578 ~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~---~~g~~ 654 (1173)
.|+|+.|...+...-... .+-........+-.|+++++.+.|++++.... .....+++++.+++ ..++.
T Consensus 1020 lgefe~A~~a~~~~~~ev---dEdi~gt~l~lFfkndf~~sl~~fe~aLsis~-----se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWMEV---DEDIRGTDLTLFFKNDFFSSLEFFEQALSISN-----SESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hcchhhHhhhhcccchhH---HHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc-----cccchhhhhHHHHHHHhhcccc
Confidence 999998876655432111 11122234445889999999999999998654 22244455555544 45566
Q ss_pred hhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhc-ccccccCCc-cchhhHHHHHHHHhhhCCCCCccccch
Q 045024 655 DSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSS-SRNCIASPE-EITGMHYLVALNKLVKNGPESCLGFNS 732 (1173)
Q Consensus 655 ~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~-~~~~~~~~~-~~a~~~~l~a~~~~~~~~~~~~~~~~~ 732 (1173)
+.|...+-+.-..-.......+.+++++.++.+.....++.+ +........ .-... ++.-..+..+++. ..
T Consensus 1092 ~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~-ll~e~i~~~~~r~------~~ 1164 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG-LLKELIYALQGRS------VA 1164 (1238)
T ss_pred hHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh-HHHHHHHHHhhhh------HH
Confidence 666643333322222222566888999988777766666665 222211110 11112 2222222233333 57
Q ss_pred hHHHHHHHHhcCCCcHHHHHHHH
Q 045024 733 GIFHLRKVLHVYPNCNLIRNLLG 755 (1173)
Q Consensus 733 Ai~~l~k~l~~~P~~~~~~~~La 755 (1173)
..+.+++++|.+|+++.+|..|.
T Consensus 1165 vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1165 VKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHHhcCCCChHHHHHHH
Confidence 88999999999999999999997
No 9
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-35 Score=340.17 Aligned_cols=584 Identities=18% Similarity=0.146 Sum_probs=483.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
|...|..+++..|++..+++..|.+.+.+++ |..|+.+|.+++.++|.. ++....+|.++.+ .|+.+.|+..|++++
T Consensus 149 A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~ral 226 (1018)
T KOG2002|consen 149 ADAQFHFVLKQSPDNILALLGKARIAYNKKD-YRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHHHHH
Confidence 4889999999999999999999999999998 999999999999999975 5788899999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 045024 86 SLSPDDSVSGEALCELLEHGGK---ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP---TS 159 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~ 159 (1173)
+++|.+..++..||.+-....+ +..+...+.++...+|.+|.+...++..++..|+|+.+..+...++.... .-
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999998876654 78899999999999999999999999999999999999999999987653 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
++.++.+|..|..+|+|++|..+|.++++.+|++ .-.++.+|++|...|+++.|+.+|+++++..|++......+|.+|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 5679999999999999999999999999999998 888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...+. .....++|.....+.....+.....|..++.++..... .
T Consensus 387 a~~~~----------~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--------------------------~ 430 (1018)
T KOG2002|consen 387 AHSAK----------KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--------------------------W 430 (1018)
T ss_pred Hhhhh----------hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--------------------------H
Confidence 87652 22224556666666666667777788877776643221 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC-----CHHHHHHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD-----NCQFWVTL 393 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~-----~~~~~~~L 393 (1173)
..+..+..|+..+...-.. -.++..+++|..++..|.+.+|...+.++...+.. ..+++ +....+++
T Consensus 431 ~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~------~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE------VANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh------hcCccccccchhHHHHHH
Confidence 1123344555555554443 45889999999999999999997665544332111 11222 24457778
Q ss_pred HHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHH
Q 045024 394 GCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470 (1173)
Q Consensus 394 g~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~ 470 (1173)
+.+.. +...|.+.|...+...|...+++..+|.+....++..+|...+..++..+..++.+|.. .|..+....++.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl-~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL-LGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH-HHHHHHhhhhhc
Confidence 87766 45678889999999999999999999999999999999999999999999999999988 777888888899
Q ss_pred HHHHHHHHHHhc---CCchHHHHHHHHHHHHhCC----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 471 DAFESCLRAVQI---LPLAEFQIGLAKLAKLSGH----------LSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537 (1173)
Q Consensus 471 eA~~~~~~al~~---~p~~~~~~~la~l~~~~g~----------~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~ 537 (1173)
.|.+-|+..+.. .+++-..++++.+....-. ...++|+..|.+++..+|.+..+-+.+|.++...|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 998877776664 3455566677775544321 114689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCh
Q 045024 538 YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM--LDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p--~~~~~~~~la~a~~~~g~~ 615 (1173)
+.+|+.+|.++.+.... +.++|.|+|.+|..+|+|..|++.|+.+++..- +++.++..||.+++..|++
T Consensus 662 ~~~A~dIFsqVrEa~~~---------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD---------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred chHHHHHHHHHHHHHhh---------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999765442 223899999999999999999999999987633 4577899999999999999
Q ss_pred HHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHh
Q 045024 616 DLALSMARNLASSVSAMEQSSAAASVSFICRLLYHI 651 (1173)
Q Consensus 616 ~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~ 651 (1173)
.+|.+....++...| ..+.+...+|-++...
T Consensus 733 ~eak~~ll~a~~~~p-----~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAP-----SNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHhCC-----ccchHHhHHHHHHHHH
Confidence 999999999999888 4556666666665544
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-34 Score=334.01 Aligned_cols=612 Identities=14% Similarity=0.109 Sum_probs=484.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES-KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
...|.-.|..+-+++-.....++..+..++..+.. ++.|...|..+++..|++..+++..|.+.+. .|+|..|+.+|+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~yn-kkdY~~al~yyk 188 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYN-KKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 34467777777777776666666666666666652 5899999999999999999999999999999 999999999999
Q ss_pred HHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Q 045024 83 RAVSLSPDD-SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK---KWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 83 ~al~~~p~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~l~~al~~~p~ 158 (1173)
+++.++|.. ++....+|.++.++|+.+.|+..|.++++++|.+..++..||.+-.... .+..++..+.++...+|.
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 999999875 4568899999999999999999999999999999999999998877655 467899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC-HHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN-VSAHYGL 234 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l 234 (1173)
+|.+...++..++..|+|..+......++..... -.+.++.+|.+|+.+|++++|..+|.++++.+|++ ...++++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 9999999999999999999999999999886543 35679999999999999999999999999999998 6678888
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIV 314 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (1173)
|+.++..|+ ++.+...+.+.....|+.......+|-.+...+.
T Consensus 349 gQm~i~~~d--------------le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~----------------------- 391 (1018)
T KOG2002|consen 349 GQMYIKRGD--------------LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK----------------------- 391 (1018)
T ss_pred hHHHHHhch--------------HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh-----------------------
Confidence 888888777 5555566666666667766777777766654421
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 315 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
+....+.|.....++++..|.+.++|..++.++.....+.. ...+.. |...+.. ...+--++.++++|
T Consensus 392 -----~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~----A~d~L~~--~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 392 -----KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGN----ALDILES--KGKQIPPEVLNNVA 459 (1018)
T ss_pred -----hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHH----HHHHHHH--cCCCCCHHHHHhHH
Confidence 11234678999999999999999999999999875544332 332222 2222221 12234578889999
Q ss_pred Hhhc---ccHHHHHHHHHHHhc-----CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 395 CLSN---YNGLKQHALIRGLQL-----DVS-----LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 395 ~~~~---~~~~a~~a~~kal~l-----~p~-----~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
..++ +.+.|.+.|..++.. +++ +...-+++|.++...++++.|.+.|..+++..|.+.++++.++ .
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ 538 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-C 538 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-H
Confidence 8887 666788888888855 222 2345899999999999999999999999999999999999954 3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH----
Q 045024 462 VQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG--PHYPESHNLYGLVCEA---- 534 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~--P~~~~a~~~lg~i~~~---- 534 (1173)
.....+...+|...+..++..+. +++.+..++.++.....+. .|..-++..++.- -+|+.++..||+++.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~--~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK--PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc--ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 55578899999999999999865 5666666776666555433 3445455554431 1578888899998764
Q ss_pred --------cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 045024 535 --------RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYA 606 (1173)
Q Consensus 535 --------~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la 606 (1173)
.+.+++|++.|.+++ ..+ |.+.-+-+.+|.++...|++.+|+.+|.++.+...+..++|+++|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL---~~d------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVL---RND------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHH---hcC------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 345666777777664 333 334448889999999999999999999999988888899999999
Q ss_pred HHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHH
Q 045024 607 FSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSA 680 (1173)
Q Consensus 607 ~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~ 680 (1173)
.+|...|+|..|++.|+..++.+- ...++.++.+||+++|..|+..++.+.+.+.....+.++.+.|-++.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~---~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFY---KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999999999999999999999443 45567899999999999999999995554443333333355555443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=8.8e-33 Score=348.66 Aligned_cols=634 Identities=13% Similarity=0.009 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLE 103 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~ 103 (1173)
.++..|..+...|+ +++|+..|+++++.+|+++.+++.++.+|.. .|++++|+..++++++.+|++...+..++.+
T Consensus 46 ~~f~~a~~~~~~Gd-~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~-~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 46 PRLDKALKAQKNND-EATAIREFEYIHQQVPDNIPLTLYLAEAYRH-FGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 34455555555555 6777777777777777777777777777777 7777777777777777777666666666555
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYL--------QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
+++++|+..|+++++.+|++..++..++.. |.+.++..+++. .+.+..+|........++.+|..+|+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 666677777777777777777776666666 555444444444 33333333344455555677777777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLM-LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
+++|+..+.++++..|.+......++.+|.. +++ +++...++..++ +++.++..++..+...|+ .++|
T Consensus 198 w~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~-------~~~A 266 (987)
T PRK09782 198 WSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE-------KARL 266 (987)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC-------HHHH
Confidence 7777777777777777666666667666666 355 666666543222 455555555555555544 3333
Q ss_pred HHHHHHHHHHHHHHhhhcCCh------------------------------------HHHHHHhchHHHHHhhccchhhh
Q 045024 255 ASLLEDACKVAEANTRLAGNM------------------------------------SCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 255 ~~~l~~Al~~~~~~~~~~~~~------------------------------------~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
...+.+--.. ....+.. ...+...++..... ++
T Consensus 267 ~~~L~~~~~~----~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------ 335 (987)
T PRK09782 267 QHYLIENKPL----FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ-KL------ 335 (987)
T ss_pred HHHHHhCccc----ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH-HH------
Confidence 2222221111 0000111 11111111111000 00
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
........................++........+..|.+......++......|+.++|...+..
T Consensus 336 ---~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~----------- 401 (987)
T PRK09782 336 ---LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ----------- 401 (987)
T ss_pred ---hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH-----------
Confidence 000000000000000111123455677777778888899999999999999999999888555443
Q ss_pred HHhhcCCC---HHHHHHHHHhhc----------------------------cc---HHHHHHHHHHHhcCCC--cHHHHH
Q 045024 379 ALLLEGDN---CQFWVTLGCLSN----------------------------YN---GLKQHALIRGLQLDVS--LADAWA 422 (1173)
Q Consensus 379 al~~~p~~---~~~~~~Lg~~~~----------------------------~~---~~a~~a~~kal~l~p~--~~~a~~ 422 (1173)
+....++. ......++.++. .. ..+...+.+++..+|. ++.+|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 33321111 111212222222 01 1233456777788888 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCC
Q 045024 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHL 502 (1173)
Q Consensus 423 ~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~ 502 (1173)
.+|.++.. +++++|+..|.+++...|++. ..+. .+.++...|++++|+..|+++....|.+...+.++.+....|+
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~-lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd- 557 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRA-VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN- 557 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHH-HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC-
Confidence 99999998 899999999999999999864 3444 4556678999999999999998887777777777777777776
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 045024 503 SSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNAL 582 (1173)
Q Consensus 503 ~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~ 582 (1173)
.++|...++++++.+|+....+..++......|++++|+..|++++.+ .| . ..++.++|.++.+.|+++
T Consensus 558 -~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P------~-~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 558 -GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---AP------S-ANAYVARATIYRQRHNVP 626 (987)
T ss_pred -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CC------C-HHHHHHHHHHHHHCCCHH
Confidence 568999999999999999888887777778889999999999999644 33 2 458999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhh
Q 045024 583 DAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSIL 662 (1173)
Q Consensus 583 eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~ 662 (1173)
+|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++..| ..+.++..+|.++...|+.++|...++
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888 556889999999999999999985333
Q ss_pred hCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCCCCccccchhHHHHHHHHh
Q 045024 663 KMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGPESCLGFNSGIFHLRKVLH 742 (1173)
Q Consensus 663 ~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~~~~~~~~~Ai~~l~k~l~ 742 (1173)
+.-.... ..+.+..-.+....... .++.+.+.+.+...
T Consensus 702 ~Al~l~P------------------------------------~~a~i~~~~g~~~~~~~------~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 LVIDDID------------------------------------NQALITPLTPEQNQQRF------NFRRLHEEVGRRWT 739 (987)
T ss_pred HHHhcCC------------------------------------CCchhhhhhhHHHHHHH------HHHHHHHHHHHHhh
Confidence 2211110 01111111221112122 23788888999999
Q ss_pred cCCCcHHHHHHHHHHhccCCcc
Q 045024 743 VYPNCNLIRNLLGYLLLSSDEW 764 (1173)
Q Consensus 743 ~~P~~~~~~~~La~ll~~~~~~ 764 (1173)
.+|+.. +-...|.+++..++.
T Consensus 740 ~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred cCccch-hccccchHhhhcccc
Confidence 999888 777777777766664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.8e-32 Score=340.11 Aligned_cols=613 Identities=12% Similarity=-0.009 Sum_probs=450.6
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
|+. .|+..|+++++.+|+++.+++.++.+|...|+ +++|+..++++++.+|++...+..++.+ +++++|+..|
T Consensus 59 d~~-~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~ldP~n~~~~~~La~i-----~~~~kA~~~y 131 (987)
T PRK09782 59 DEA-TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKRHPGDARLERSLAAI-----PVEVKSVTTV 131 (987)
T ss_pred CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHh-----ccChhHHHHH
Confidence 344 45999999999999999999999999999998 9999999999999999998888777554 7889999999
Q ss_pred HHHHhhCCCCHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCEL--------LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
+++++.+|++.+++..++.. |.+.++..+++. .+.+..+|........++.+|..+|+|++|+..+++++
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999998 777766666666 44444444555666777999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---cCCCHH
Q 045024 154 RGYPTSPHLWEALGLAYHR-LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI---SSENVS 229 (1173)
Q Consensus 154 ~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~ 229 (1173)
+..|.+......++.+|.. +++ +++...++..++ +++.++..++..|.+.|+.++|...+++.-.. +|++..
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 9999999999999999998 577 888888765333 78899999999999999999999888875443 355555
Q ss_pred HHHHHHHHHHHH----------------------HHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHH
Q 045024 230 AHYGLASGLLGL----------------------AKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQL 287 (1173)
Q Consensus 230 a~~~la~~~~~l----------------------~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~ 287 (1173)
-.+.++.....- .......+.+.. +. ......+........ ...
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~r---~~~ 351 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA-------AQ----KLLATLPANEMLEER---YAV 351 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH-------HH----HHhcCCCcchHHHHH---Hhh
Confidence 555555443220 011111111111 11 111111111110000 000
Q ss_pred HHhhccchhhhhhc---hhhhhhhhhh--hhHhhHhhhhHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhh--
Q 045024 288 TYAKCFPWAEERQS---LEFDVETFSA--SIVSWKTTCLMAAISSKSSYQRALYLAPW---QANIYTDIAITSDLIYS-- 357 (1173)
Q Consensus 288 ~~~~~~~~~~~~~~---l~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~la~~~~~~g~-- 357 (1173)
... .....+.... .......... .-..+.....|+.++|...|++++...++ +..+...++.+|...+.
T Consensus 352 ~~~-~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVA-TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccc-cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 000 0000000000 0000000001 11123334456788999999999986443 23456688888888766
Q ss_pred -HHHhhhhhh-------hh-------hHHHHHHHHHHHhhcCC--CHHHHHHHHHhhc--ccHHHHHHHHHHHhcCCCcH
Q 045024 358 -LNEAYGHYQ-------SA-------WHVSEKMALGALLLEGD--NCQFWVTLGCLSN--YNGLKQHALIRGLQLDVSLA 418 (1173)
Q Consensus 358 -~~eA~~~~~-------~~-------~~~A~k~~~~al~~~p~--~~~~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~~ 418 (1173)
..++..... .. ...+...+.+++...|. ++.+|..+|.++. ..+.|..+|.+++...|++.
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~ 510 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW 510 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH
Confidence 223322100 00 12345556777888888 9999999998887 45578888999999999754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE-FQIGLAKLAK 497 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~la~l~~ 497 (1173)
....+|.++...|++++|+..|+++....|.+ ..++. .+.++...|++++|...|+++++.+|... ....++....
T Consensus 511 -~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~-la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 -QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLA-AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 46667888889999999999999988776654 55666 56688899999999999999999988543 3333333333
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh
Q 045024 498 LSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR 577 (1173)
Q Consensus 498 ~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~ 577 (1173)
..|+ .++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.+ .|+ ...++.++|.++..
T Consensus 588 ~~Gr--~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd------~~~a~~nLG~aL~~ 655 (987)
T PRK09782 588 IPGQ--PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL---EPN------NSNYQAALGYALWD 655 (987)
T ss_pred hCCC--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC------CHHHHHHHHHHHHH
Confidence 3466 67999999999999997 999999999999999999999999999644 343 44599999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhh
Q 045024 578 AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDST 657 (1173)
Q Consensus 578 ~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A 657 (1173)
.|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++..| ....+....+.+.......+.+
T Consensus 656 ~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P-----~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 656 SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID-----NQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888 3345555666666666666666
Q ss_pred hHHhh
Q 045024 658 INSIL 662 (1173)
Q Consensus 658 ~~~l~ 662 (1173)
.+.+.
T Consensus 731 ~~~~~ 735 (987)
T PRK09782 731 HEEVG 735 (987)
T ss_pred HHHHH
Confidence 54333
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.9e-30 Score=321.69 Aligned_cols=446 Identities=16% Similarity=0.105 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..++. .|++++|+..|+++++..|+ +..+..+|.+|...|++++|+..++++++.+|++..+++.+|.++
T Consensus 127 a~~~k~~G~~~~~-~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 127 AAKLKEKGNKAYR-NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445667777777 77777777777777777774 556777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
..+|++++|+..|..+...++.+......+..... ...+......+++..|.+...+..++..+. ..+...+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 279 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAG 279 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhh
Confidence 77777777777776666555443322211111111 134455555666666666555555655442 2233344444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
+....+.++.....+..++...... ...+.+++|+..|++++... ...+.....+..+|.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~----~~~~~y~~A~~~~~~al~~~----~~~~~~a~a~~~lg~~~~~~------- 344 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPES----KADESYEEAARAFEKALDLG----KLGEKEAIALNLRGTFKCLK------- 344 (615)
T ss_pred hhcccccccccccchHHHHHHHHHh----hhhhhHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHc-------
Confidence 5555555555554444444433322 22333444443333333211 00111111111111111111
Q ss_pred hhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHH
Q 045024 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376 (1173)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~ 376 (1173)
+++++|+..|+++++++|.....+..+|.++...|++++|
T Consensus 345 -------------------------g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA--------------- 384 (615)
T TIGR00990 345 -------------------------GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA--------------- 384 (615)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH---------------
Confidence 1123344444444444444444444444444444444333
Q ss_pred HHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 045024 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWA 456 (1173)
Q Consensus 377 ~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~ 456 (1173)
...|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus 385 ---------------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 385 ---------------------------EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred ---------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 34455555666666666666666666666666666666666666666666665
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g 536 (1173)
. ++.++...|++++|+. .+++++...|+++.++..+|.++...|
T Consensus 438 ~-la~~~~~~g~~~eA~~-----------------------------------~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 438 Q-LGVTQYKEGSIASSMA-----------------------------------TFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred H-HHHHHHHCCCHHHHHH-----------------------------------HHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 5 4446666666665555 555555566888999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCC-CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 537 DYQAAVVSYRLARYAISSSSGTVP-NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 537 ~~~~A~~~~~kAl~l~~~~pe~~~-~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
++++|++.|++++.+ .|+... .......+...+..+...|++++|++.++++++.+|++..++..+|.++...|++
T Consensus 482 ~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 999999999999655 332211 1111122222333444579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 045024 616 DLALSMARNLASSVS 630 (1173)
Q Consensus 616 ~eA~~~~~~aL~~~p 630 (1173)
++|++.|+++++..+
T Consensus 559 ~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 559 DEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998665
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=1.5e-28 Score=306.38 Aligned_cols=409 Identities=13% Similarity=0.094 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+..+..+|..++..++ |++|+..|+++++..|+ +..+..+|.+|.. .|++++|+..++++++++|++..+++.+|.+
T Consensus 127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~-l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-PVYYSNRAACHNA-LGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567789999999988 99999999999999996 7889999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY----------- 170 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~----------- 170 (1173)
|...|++++|+..+..+...++.+......+...... ..+......+++..|.+...+..++..+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 9999999999999988877665433221111111111 2333444444455554433333333322
Q ss_pred ----------------------H---HcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 171 ----------------------H---RLGMFSAAIKSYGRAIELD---DTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 171 ----------------------~---~~g~~~~A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
. ..+++++|++.|+++++.+ |....++..+|.++..+|++++|+..|+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1245666666666666542 44555666666666666666666666666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhch
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 302 (1173)
.+|++...+..+|.++...|+
T Consensus 360 l~P~~~~~~~~la~~~~~~g~----------------------------------------------------------- 380 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGD----------------------------------------------------------- 380 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCC-----------------------------------------------------------
Confidence 666666555555555544333
Q ss_pred hhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhh
Q 045024 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLL 382 (1173)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~ 382 (1173)
+++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 381 ---------------------~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A--------------------- 418 (615)
T TIGR00990 381 ---------------------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA--------------------- 418 (615)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 45678888889999999999999999999999988877
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHH
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADV 462 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~ 462 (1173)
...|++++.++|++..++..+|.++.+.|++++|+..|+++++.+|+++.++.. .+.+
T Consensus 419 ---------------------~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~-lg~~ 476 (615)
T TIGR00990 419 ---------------------GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY-YGEL 476 (615)
T ss_pred ---------------------HHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-HHHH
Confidence 447788888899999999999999999999999999999999999999999988 6779
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 463 QASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
+...|++++|++.|++++++.|.. ....... ..+...+.++...|++++|
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~-----------------------------~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVL-----------------------------PLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHH-----------------------------HHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999988742 1111100 0111122233345777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
+..|++++.+ .|+ ...++..+|.++...|++++|++.|+++++..+..
T Consensus 528 ~~~~~kAl~l---~p~------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 528 ENLCEKALII---DPE------CDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhc---CCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 7777777433 232 22366677777777777777777777776665543
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.4e-25 Score=278.75 Aligned_cols=339 Identities=9% Similarity=-0.032 Sum_probs=269.8
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
....+..+...|+ +++|...++.++...|+++.+++.+|.+... .|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 45 ~~~~~~~~~~~g~-~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDE-TDVGLTLLSDRVLTAKNGRDLLRRWVISPLA-SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCC-cchhHHHhHHHHHhCCCchhHHHHHhhhHhh-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3444555666666 8888888888888888888888888888888 8888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
.|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLAR 201 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888887776654 4778888888888888
Q ss_pred HHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 185 RAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 185 ~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
++++.+|. .......++.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--------------~~eA~- 266 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--------------SREAK- 266 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------chhhH-
Confidence 88887653 334445567788888888888888888888888888888777777777665 11111
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
.+|+..|++++..+|+++.
T Consensus 267 -------------------------------------------------------------~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 267 -------------------------------------------------------------LQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhCCCCHH
Confidence 1467778888888888888
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHH
Q 045024 344 IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAH 423 (1173)
Q Consensus 344 ~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~ 423 (1173)
++..+|.++...|++++| ...+++++.++|+++.++..
T Consensus 286 a~~~lg~~l~~~g~~~eA------------------------------------------~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 286 IVTLYADALIRTGQNEKA------------------------------------------IPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHCCCHHHH------------------------------------------HHHHHHHHHhCCCCHHHHHH
Confidence 888888888888887776 34566777778888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 424 IGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 424 Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
+|.+|...|++++|+..|++++..+|+++..+.. .+.++...|++++|+..|+++++..|.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~-~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRY-AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8888888888888888888888888887655544 455777888888888888888888774
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=4e-25 Score=274.52 Aligned_cols=307 Identities=9% Similarity=-0.059 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..-....+..... .|++++|...++.++...|+++.++..++......|++++|+..++++++.+|+++.++..+|.++
T Consensus 42 ~~~~~~~~~~~~~-~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLR-KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHh-cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445556677778 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|++..++..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888877664 47889999999999
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccch
Q 045024 217 FQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPW 295 (1173)
Q Consensus 217 ~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 295 (1173)
++++++.+|.... ....++.++...|+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~---------------------------------------------------- 227 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGK---------------------------------------------------- 227 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCC----------------------------------------------------
Confidence 9999888764322 22222222222222
Q ss_pred hhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHH
Q 045024 296 AEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKM 375 (1173)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~ 375 (1173)
+++|+..|++++...|+++.++..+|.++...|++++|.
T Consensus 228 ----------------------------~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~------------- 266 (656)
T PRK15174 228 ----------------------------YQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK------------- 266 (656)
T ss_pred ----------------------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH-------------
Confidence 346788888899999999999999999999999887651
Q ss_pred HHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 045024 376 ALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPW 455 (1173)
Q Consensus 376 ~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~ 455 (1173)
..|...|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 267 -------------------------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 267 -------------------------LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred -------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 2345678899999999999999999999999999999999999999999999998
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 456 AGMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 456 ~~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
.. ++.++...|++++|+..|++++..+|
T Consensus 322 ~~-La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 322 AM-YARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 88 67799999999999998877776665
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=6.7e-25 Score=278.32 Aligned_cols=444 Identities=12% Similarity=-0.001 Sum_probs=328.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP 123 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p 123 (1173)
..++. -...|-++.-..-...+... .|+.++|+..+.++...+|....++..+|.++...|++++|+..++++++.+|
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~-~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALW-AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444 44566667666777777788 88888898888888888888888888888888888999999999999888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888999999999999999999998888 88889999999999999999999999999998888888988
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhc
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g 283 (1173)
+...|+.++|+..++++.. .|+..... .. ..+....... ..... .
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l--------~~-----------------~~~~~~~r~~--~~~~~-------~ 204 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDL--------EA-----------------DAAAELVRLS--FMPTR-------S 204 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHH--------HH-----------------HHHHHHHHhh--ccccc-------C
Confidence 8888888889888887665 44311000 00 0000000000 00000 0
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHHh
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDI-------AITSDLIY 356 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~l-------a~~~~~~g 356 (1173)
+ .......++|+..|+.+++..|.++...... ...+...|
T Consensus 205 ~---------------------------------~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 205 E---------------------------------KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred h---------------------------------hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 0 0000112467778888886644443322111 11122333
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHH
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA-DAWAHIGKLYGEVGEKK 435 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~-~a~~~Lg~~y~~~g~~e 435 (1173)
+++ .|+..|+++++..|..| .+...+|.+|...|+++
T Consensus 252 ~~~------------------------------------------eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 252 RYK------------------------------------------DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred hHH------------------------------------------HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 333 34556777776654322 23444699999999999
Q ss_pred HHHHHHHHHHhhCCCCh----hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 436 LARQAFDSARSIDPSLA----LPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAI 511 (1173)
Q Consensus 436 ~A~~~f~~al~~~P~~~----~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l 511 (1173)
+|+..|+++++.+|.++ ..... ++.++...|++++|+..++++....|.....+.
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~-L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~-------------------- 348 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELAD-LFYSLLESENYPGALTVTAHTINNSPPFLRLYG-------------------- 348 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHH-HHHHHHhcccHHHHHHHHHHHhhcCCceEeecC--------------------
Confidence 99999999999888762 23444 455778999999999999999988874211000
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 512 QQAIQRGPHY--PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 512 ~~al~~~P~~--~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
.....|++ ..++..+|.++...|++++|++.+++++ ...|++ ..++..+|.++...|++++|++.++
T Consensus 349 --~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al---~~~P~n------~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 349 --SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA---YNAPGN------QGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred --CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11124664 4578899999999999999999999985 444443 4499999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcccc
Q 045024 590 SLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAM 632 (1173)
Q Consensus 590 ~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~ 632 (1173)
++++..|++...++.+|.++...|++++|...++++++..|+.
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999988843
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=7.5e-25 Score=277.85 Aligned_cols=441 Identities=13% Similarity=0.037 Sum_probs=333.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
+..+++ -...|-++....-...+....|+ +++|+..+.++...+|..+.++..+|.++.. .|++++|+..|+++++.
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~-~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~-~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQ-DAEVITVYNRYRVHMQLPARGYAAVAVAYRN-LKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 455666 55667777777777777777887 8999999999999899999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la 157 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV 157 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIF-----PLLESGNIFL-----MLGNF---RKGVEQFQLALKISSENVSAHYGL 234 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~a~~~l 234 (1173)
.++...|+.++|++.++++.. .|+... ....+..+.. ..+++ ++|++.++.+++..|.++......
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 999999999999999998775 554211 1112222222 12234 667777777776555444332111
Q ss_pred HHHHHH-HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhh
Q 045024 235 ASGLLG-LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASI 313 (1173)
Q Consensus 235 a~~~~~-l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (1173)
..+... ++. .
T Consensus 237 ~~a~~d~l~~-----------------------------------------L---------------------------- 247 (765)
T PRK10049 237 QRARIDRLGA-----------------------------------------L---------------------------- 247 (765)
T ss_pred HHHHHHHHHH-----------------------------------------H----------------------------
Confidence 111111 000 0
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 314 VSWKTTCLMAAISSKSSYQRALYLAPWQA-NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVT 392 (1173)
Q Consensus 314 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~ 392 (1173)
...+.+++|+..|+++++..|..+ .+...++.++...|++++|
T Consensus 248 -----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A------------------------------- 291 (765)
T PRK10049 248 -----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKA------------------------------- 291 (765)
T ss_pred -----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHH-------------------------------
Confidence 001224578888888888764332 2333457777777777666
Q ss_pred HHHhhcccHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCC
Q 045024 393 LGCLSNYNGLKQHALIRGLQLDVSL----ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL 468 (1173)
Q Consensus 393 Lg~~~~~~~~a~~a~~kal~l~p~~----~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~ 468 (1173)
...|++++..+|.+ ......++.++...|++++|+..++++.+.+|.....+.. ..
T Consensus 292 -----------~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~-------~~-- 351 (765)
T PRK10049 292 -----------QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS-------PT-- 351 (765)
T ss_pred -----------HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC-------CC--
Confidence 45788888888766 4567888889999999999999999999998864321110 00
Q ss_pred HHHHHHHHHHHHhcCCch---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 469 VDDAFESCLRAVQILPLA---EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSY 545 (1173)
Q Consensus 469 ~~eA~~~~~~al~~~p~~---~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~ 545 (1173)
..|+. .....++.+....|+ .++|+..+++++...|+++.++..+|.++...|++++|++.+
T Consensus 352 -------------~~p~~~~~~a~~~~a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 352 -------------SIPNDDWLQGQSLLSQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 01211 122223333333333 235555666777777899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH
Q 045024 546 RLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVL 602 (1173)
Q Consensus 546 ~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~ 602 (1173)
++++. ..|++. .+++.+|.++...|++++|+..++++++..|+++.+.
T Consensus 417 ~~al~---l~Pd~~------~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 417 KKAEV---LEPRNI------NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHh---hCCCCh------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99964 445443 3899999999999999999999999999999998654
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=4.7e-22 Score=223.30 Aligned_cols=320 Identities=13% Similarity=0.130 Sum_probs=259.1
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
..|++++...|.....|...+..+...|+...|...+.++++.+|++.+.|+. ...+.....+++.|..+|.++....|
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla-avKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA-AVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhccCC
Confidence 45889999999999999999999999999999999999999999999999998 77788899999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 485 LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 485 ~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
....++..+.+...+++ .++|+..++.+++..|+.+..|.++|.++.+.++.+.|.+.|..-+ ..-|.++.
T Consensus 650 TeRv~mKs~~~er~ld~--~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ip---- 720 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDN--VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIP---- 720 (913)
T ss_pred cchhhHHHhHHHHHhhh--HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCch----
Confidence 99999999999888888 4699999999999999999999999999999999999999999774 44455555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHH
Q 045024 565 QDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFI 644 (1173)
Q Consensus 565 ~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~l 644 (1173)
.|..|+.+-.+.|+.-.|...+++..-.+|.+...|+...+...+.|+.+.|.....++|+..|.+. ...
T Consensus 721 --LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg-------~LW- 790 (913)
T KOG0495|consen 721 --LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG-------LLW- 790 (913)
T ss_pred --HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-------hhH-
Confidence 8999999999999999999999999999999999999999999999999999999999999888322 111
Q ss_pred HHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCCC
Q 045024 645 CRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNGP 724 (1173)
Q Consensus 645 a~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~~ 724 (1173)
+. ...++..|..- .....|+.. ...+| ++ +++.+.+.=.+.
T Consensus 791 aE-----------aI~le~~~~rk-------------------Tks~DALkk---ce~dp----hV--llaia~lfw~e~ 831 (913)
T KOG0495|consen 791 AE-----------AIWLEPRPQRK-------------------TKSIDALKK---CEHDP----HV--LLAIAKLFWSEK 831 (913)
T ss_pred HH-----------HHHhccCcccc-------------------hHHHHHHHh---ccCCc----hh--HHHHHHHHHHHH
Confidence 11 11122222211 111222222 22222 22 333333322222
Q ss_pred CCccccchhHHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchh-hhhhccccCCCcccccCCC
Q 045024 725 ESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSH-VASRCCSLETSDCIKKEGP 787 (1173)
Q Consensus 725 ~~~~~~~~Ai~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~-~a~ra~~l~~~~~~~~~~l 787 (1173)
.++.|.+-|++++..+|++..+|...=...+..|+-++.. ...+|....|-++..|...
T Consensus 832 ----k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 832 ----KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred ----HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 3489999999999999999999999999999998765544 5667777889888886653
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-24 Score=237.70 Aligned_cols=434 Identities=15% Similarity=0.105 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
...+-..|+-+++.|+|++|+++|..++.+.|+.+..+.+++-+|...|++++.++...++++++|+...++++.+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHhhhcCChHHHHHHhc
Q 045024 206 MLGNFRKGVEQFQLALKI-SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE-ANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~-~~~~~~~~~~~~~~~~g 283 (1173)
.+|++++|+....-.--. +-++......+-+++-.+|. .++-+.+. .-....|....+....|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~---------------~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM---------------KKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH---------------HHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 999999998766533221 22233333333344444443 22333333 22233333322222222
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHH-------HhcCCCCHH------HHHHHHH
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRA-------LYLAPWQAN------IYTDIAI 350 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------l~l~p~~~~------~~~~la~ 350 (1173)
.+...... .... ....................-..+..|...+.+. +..+..+.. ++...|.
T Consensus 260 sF~~~~~~---~~~~--~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 SFHADPKP---LFDN--KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred hccccccc---cccC--CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 22111000 0000 0000000000000000000001122233322222 222211222 2222222
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH---HHHHHHHHHHhcCCCcHHHHHHHHHH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG---LKQHALIRGLQLDVSLADAWAHIGKL 427 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~---~a~~a~~kal~l~p~~~~a~~~Lg~~ 427 (1173)
.+...|+.-.+ ..-+..+|.++|.+...+..++.++.+.. .....|.++..++|.++++|++.|++
T Consensus 335 F~fL~g~~~~a-----------~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 335 FHFLKGDSLGA-----------QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred hhhhcCCchhh-----------hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 33333333333 22244555555555555555555554222 23334555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHH
Q 045024 428 YGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQV 507 (1173)
Q Consensus 428 y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A 507 (1173)
++-++++++|+..|+++++++|++..+++. ++.+..+.++++ ++
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ-l~~a~Yr~~k~~-----------------------------------~~ 447 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQ-LCCALYRQHKIA-----------------------------------ES 447 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHH-HHHHHHHHHHHH-----------------------------------HH
Confidence 555555555555555555555555555555 222333444333 56
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHH-hcCCHHHHHH
Q 045024 508 FGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLS-RAGNALDAVR 586 (1173)
Q Consensus 508 ~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~-~~g~~~eAi~ 586 (1173)
+..|+.+....|+.++++...|.++..+++|+.|++.|++++++-+.. ....-.+..+...|.+.. -.+++..|+.
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~---~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE---HLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc---ccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 667777777889999999999999999999999999999997763221 000001122333333322 2489999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 587 ECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 587 ~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
.++++++.+|....++..+|.+..+.|+.++|+++|++.+...
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987744
No 21
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=4.4e-23 Score=267.31 Aligned_cols=653 Identities=12% Similarity=0.033 Sum_probs=464.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN-PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD-DSVSGEAL 98 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~-~~~a~~~L 98 (1173)
.+..+..+...+...|. +++|...|..+.+.. +.+...+..+...+.. .+..+.|...+..+++..+. +......+
T Consensus 50 ~~~~~n~~i~~l~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 50 STHDSNSQLRALCSHGQ-LEQALKLLESMQELRVPVDEDAYVALFRLCEW-KRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred chhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh-CCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34455666777778877 999999999988742 4456667777788888 89999999999999887654 34456778
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...|.+.|+.+.|...|+++. +.+..+|..+...|.+.|++++|+..|+++... .| +..++..+...+...++.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccch
Confidence 888999999999999998875 346678999999999999999999999998763 34 455666677777788888
Q ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 045024 177 SAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGA 255 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~ 255 (1173)
..+.+.+..+++... .+...+..+...|.+.|++++|...|+++.. .+...|..+...|.+.|+ +++|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~-------~~eAl 273 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE-------CLEGL 273 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC-------HHHHH
Confidence 888888888776542 3566777888889999999999999988643 344566667676666555 55555
Q ss_pred HHHHHHHHHHHHHhhhcCChHH------HHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 256 SLLEDACKVAEANTRLAGNMSC------IWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 256 ~~l~~Al~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
..|.+.... ...|+... .....|+...+. .........+...+...-..+...+...+..++|..
T Consensus 274 ~lf~~M~~~-----g~~Pd~~ty~~ll~a~~~~g~~~~a~----~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 274 ELFFTMREL-----SVDPDLMTITSVISACELLGDERLGR----EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHH----HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 444443321 12222211 111122211111 011111112222333333444555666788899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhh--cccHHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLS--NYNGLKQHAL 407 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~--~~~~~a~~a~ 407 (1173)
.|++... .+...|+.+...|.+.|++++|...+.. + ......|+...+...+.... .+.+.+.+.+
T Consensus 345 vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~-------M--~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 345 VFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL-------M--EQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH-------H--HHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 9987543 3567899999999999999988554331 1 12345577655544444222 2555677777
Q ss_pred HHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc-CCc
Q 045024 408 IRGLQLDV-SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI-LPL 485 (1173)
Q Consensus 408 ~kal~l~p-~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~-~p~ 485 (1173)
..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|.. +...|.+.|+.++|+.+|+++... .|+
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~-mi~~~~~~g~~~eA~~lf~~m~~~~~pd 488 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTS-IIAGLRLNNRCFEALIFFRQMLLTLKPN 488 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHH-HHHHHHHCCCHHHHHHHHHHHHhCCCCC
Confidence 77776532 3677889999999999999999999998643 35567877 445888999999999999998754 455
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 486 AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGP-HYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 486 ~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P-~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
...+..+-......|. .+.+...+..+++... .+......+...|.+.|+.++|...|+.. .+ +
T Consensus 489 ~~t~~~lL~a~~~~g~--l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~-d------ 553 (857)
T PLN03077 489 SVTLIAALSACARIGA--LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EK-D------ 553 (857)
T ss_pred HhHHHHHHHHHhhhch--HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CC-C------
Confidence 5555555555555565 4578888888887643 36667788999999999999999999854 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHH
Q 045024 565 QDISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSF 643 (1173)
Q Consensus 565 ~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~ 643 (1173)
..+|..+...|.+.|+.++|++.|+++.+.+..+ ..++..+-.++.+.|++++|.++|+.+.+..+ -..+...+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g---i~P~~~~y~~ 630 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS---ITPNLKHYAC 630 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC---CCCchHHHHH
Confidence 3379999999999999999999999998876543 44666677889999999999999999986332 2334456778
Q ss_pred HHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHHHHHhhhCC
Q 045024 644 ICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLVKNG 723 (1173)
Q Consensus 644 la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a~~~~~~~~ 723 (1173)
+..++.+.|..++|.+.++++|-. |+...+..++.+ +..+++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~------------------------------------pd~~~~~aLl~a--c~~~~~ 672 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPIT------------------------------------PDPAVWGALLNA--CRIHRH 672 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCC------------------------------------CCHHHHHHHHHH--HHHcCC
Confidence 888888888888888877766522 222222233333 344555
Q ss_pred CCCccccchhHHHHHHHHhcCCCcHHHHHHHHHHhccCCcccchhhhhhcccc
Q 045024 724 PESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSL 776 (1173)
Q Consensus 724 ~~~~~~~~~Ai~~l~k~l~~~P~~~~~~~~La~ll~~~~~~~~a~~a~ra~~l 776 (1173)
. +.|....++++.++|+++..+..|+++|...|+|+++...++...-
T Consensus 673 ~------e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 673 V------ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred h------HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5 6788889999999999999999999999999999999988777763
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-23 Score=227.63 Aligned_cols=406 Identities=15% Similarity=0.111 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+..+-..|.-++..++ |++|+++|.++|++.|+.+..|.+++-+|.. .|+|++-++...++++++|+...+++..+..
T Consensus 115 A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~epiFYsNraAcY~~-lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDEPIFYSNRAACYES-LGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCCchhhhhHHHHHHH-HhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 3456677888888887 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--CCCc---H---HHHHHHHHHHHH--cC-C------HHHHHHHHHHHHH-------hCC
Q 045024 102 LEHGGKESLEVVVCREASDK--SPRA---F---WAFRRLGYLQLH--HK-K------WSEAVQSLQHAIR-------GYP 157 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--~p~~---~---~a~~~la~~~~~--~g-~------~~~A~~~l~~al~-------~~p 157 (1173)
+...|++++|+....-.--. ..+. + ..+...|.--.. .+ + -..-+..|-..+. .++
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 99999999998765432111 1110 0 011111111100 00 0 0001111111110 111
Q ss_pred CC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC----CC---------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 158 TS---PHLWEALGLAYHR-LGMFSAAIKSYGRAIELDD----TS---------IFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 158 ~~---~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p----~~---------~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.+ ...-..+-..+.. ...|..|...+.+...... .+ ..++...|..++-.|++-.|.+.|+.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 11 1111111111111 1245666665555443211 11 455666677777777777777777777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhh
Q 045024 221 LKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQ 300 (1173)
Q Consensus 221 l~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 300 (1173)
+.++|.+...+..++.+|....+.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~-------------------------------------------------------- 376 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQS-------------------------------------------------------- 376 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhcc--------------------------------------------------------
Confidence 777777766666677776664441
Q ss_pred chhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHH
Q 045024 301 SLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGAL 380 (1173)
Q Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al 380 (1173)
.+-...|.++..++|.++++|+..|.++..++++++|..
T Consensus 377 ------------------------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a----------------- 415 (606)
T KOG0547|consen 377 ------------------------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA----------------- 415 (606)
T ss_pred ------------------------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH-----------------
Confidence 123345566666777777777777777777776666622
Q ss_pred hhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHH
Q 045024 381 LLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSA 460 (1173)
Q Consensus 381 ~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a 460 (1173)
.|++++.++|.+..++..++.+.+++++++++...|+.+.+..|+.++.+.. -+
T Consensus 416 -------------------------DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~-fA 469 (606)
T KOG0547|consen 416 -------------------------DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL-FA 469 (606)
T ss_pred -------------------------HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH-HH
Confidence 2334444444444444444444444444444444444444444444444433 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 461 DVQASESLVDDAFESCLRAVQILPL-------AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCE 533 (1173)
Q Consensus 461 ~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~ 533 (1173)
.++..++++++|++.|.+++++.|. +..+.+-+.+..+- ..+..+|...++++++.+|....++..+|.+..
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 3444444444444444444444332 01111111111110 012346777777888888888999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhh
Q 045024 534 ARSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 534 ~~g~~~~A~~~~~kAl~l~~ 553 (1173)
++|+.++|+++|+++..+..
T Consensus 549 Q~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999976644
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=4.3e-22 Score=247.28 Aligned_cols=475 Identities=13% Similarity=0.016 Sum_probs=257.8
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
.|..+...+..+.+..+ .|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus 30 ~p~~~~~~y~~aii~~r-~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRAR-AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 44444444444444444 45555555555555544444432222444444444455555555544442222223333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 4444444555555555555555555444444444444444455555555555544444443222 333333333444444
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhc
Q 045024 213 GVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKC 292 (1173)
Q Consensus 213 A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 292 (1173)
|++.|+++++.+|++......+..++...|- ...|.+.....+.........+.....+...+...
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~--------------~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRI--------------VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555444444444444433333 12222222222211111111111111111110000
Q ss_pred cchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHhhHHHhhhhh
Q 045024 293 FPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN-------IYTDIAITSDLIYSLNEAYGHY 365 (1173)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-------~~~~la~~~~~~g~~~eA~~~~ 365 (1173)
.... ... .......+.|+..++..+...|..|. +......++...+++.+++
T Consensus 254 ~~~~------~~~------------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi--- 312 (822)
T PRK14574 254 VLPT------RSE------------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI--- 312 (822)
T ss_pred cccc------ccc------------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH---
Confidence 0000 000 00112245788888888874443332 2334444444555555442
Q ss_pred hhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 366 QSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYGEVGEKKLARQAFDSA 444 (1173)
Q Consensus 366 ~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~a 444 (1173)
..|+...... |--+.+....|+.|+..+++++|+.+|+++
T Consensus 313 ---------------------------------------~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 313 ---------------------------------------KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred ---------------------------------------HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 2333332222 223457788999999999999999999999
Q ss_pred HhhCCC------ChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 045024 445 RSIDPS------LALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG 518 (1173)
Q Consensus 445 l~~~P~------~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~ 518 (1173)
+.-+|. ....... +..+|...+++++|..++++..+..|.....++ .... .-+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~-L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~------~~~~--------------~pn 412 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADD-LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG------LPGK--------------EPN 412 (822)
T ss_pred hhccccccCCCcchHHHHH-HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC------CCCC--------------CCC
Confidence 886532 2222234 556888999999999999999886551000000 0000 114
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
|+...+...++.++...|++.+|++.+++. +...|++.. +...+|.++...|.+.+|.+.++.+...+|.+
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l---~~~aP~n~~------l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDL---SSTAPANQN------LRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 566777788888888888888888888877 344455444 78888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 599 AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 599 ~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
..+...+|.++..+|++++|....+.+++..|+..
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 88888888888888888888888888888888554
No 24
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=1.2e-20 Score=244.57 Aligned_cols=592 Identities=12% Similarity=-0.030 Sum_probs=413.2
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEAN-PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ-NAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~~-P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..|+..|....+.. |.+...+..+...+...+. ++.|...+..+++..+. +......+-..|.+ .|+.+.|...|+
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~-~g~~~~A~~~f~ 145 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRA-VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR-FGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCC-HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-CCChHHHHHHHh
Confidence 34688888887742 3455566666666666666 89999999999877654 34566777788889 999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTS 159 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~ 159 (1173)
+.. +.+...|..+...|.+.|++++|+..|+++... .| +..++..+...+...++...+.+.+..+++.. +.+
T Consensus 146 ~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 146 KMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred cCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 864 346678999999999999999999999998754 34 45566667777778888889988888887653 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--cCCCHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI--SSENVSAHYGLASG 237 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~ 237 (1173)
...+..+...|.+.|++++|...|++.. ..+..+|..+...|.+.|++++|+..|+++.+. .|+. ..+..+...
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL-MTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHH
Confidence 6678888899999999999999998864 345678888999999999999999999998764 3443 333344444
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHH-HHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhh
Q 045024 238 LLGLAKQCINLGAFRWGASLLEDACKVA-EANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSW 316 (1173)
Q Consensus 238 ~~~l~~~~~a~g~~~~A~~~l~~Al~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 316 (1173)
+.. .|+.+.+.+.+....+.- .........+...+...|+...+..-+..... .+...+ .....
T Consensus 298 ~~~-------~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~~s~--n~li~ 362 (857)
T PLN03077 298 CEL-------LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET------KDAVSW--TAMIS 362 (857)
T ss_pred HHh-------cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC------CCeeeH--HHHHH
Confidence 443 444666666555554321 00111222223333444444433322111110 011112 22333
Q ss_pred HhhhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcC-CCHHHHHHH
Q 045024 317 KTTCLMAAISSKSSYQRALYLA--PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEG-DNCQFWVTL 393 (1173)
Q Consensus 317 ~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p-~~~~~~~~L 393 (1173)
.+...+..++|+..|++..+.. |+ ...+..+...+...|+++++. +.+..+.+... .+...++.+
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~-----------~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGV-----------KLHELAERKGLISYVVVANAL 430 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHH-----------HHHHHHHHhCCCcchHHHHHH
Confidence 4455677899999999876543 54 345666667788888888773 33444444432 345566667
Q ss_pred HHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHH
Q 045024 394 GCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVD 470 (1173)
Q Consensus 394 g~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~ 470 (1173)
-..+. +.+.|.+.|++.. ..+...|..+...|.+.|++++|+..|+++....+.+...+.. +..++.+.|+.+
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~-lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIA-ALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHH-HHHHHhhhchHH
Confidence 66666 4445666676653 3467899999999999999999999999998654444455555 344788999999
Q ss_pred HHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 471 DAFESCLRAVQILP--LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 471 eA~~~~~~al~~~p--~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
.+.+.+..+++... +......+...+.+.|+ .++|...|+.. +.+..+|+.+...|.+.|+.++|++.|++.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~--~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR--MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCC--HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988754 33344455666666776 56888888876 668889999999999999999999999988
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 045024 549 RYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML--DAEVLQVYAFSLWQLGKYDLALSMARNLA 626 (1173)
Q Consensus 549 l~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~--~~~~~~~la~a~~~~g~~~eA~~~~~~aL 626 (1173)
.+. ...|+. .++..+...+.+.|+.++|.++|+.+.+..+. +...+..+..++.+.|+.++|.+.++++-
T Consensus 581 ~~~-g~~Pd~-------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 581 VES-GVNPDE-------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHc-CCCCCc-------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 532 223432 25777788899999999999999999854322 34678889999999999999999999862
Q ss_pred hhccccccchhhhhHHHHHHHHHHhcChhhhh
Q 045024 627 SSVSAMEQSSAAASVSFICRLLYHISGLDSTI 658 (1173)
Q Consensus 627 ~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~ 658 (1173)
..| ++.++..+...+...|+.+.+.
T Consensus 653 -~~p------d~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 653 -ITP------DPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred -CCC------CHHHHHHHHHHHHHcCChHHHH
Confidence 112 2344444444454455555443
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.1e-20 Score=221.58 Aligned_cols=573 Identities=16% Similarity=0.133 Sum_probs=371.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|.+.+.++++.+|.++.+|+.+|.+|-++|+ .+++...+-.|..++|++.+.|..++....+ +|++++|.-+|.+|
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 346999999999999999999999999999987 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--- 156 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--- 156 (1173)
++.+|.+.......+.+|.+.|+...|...|.+++...|.. -......+..+...++-+.|++.++.++...
T Consensus 234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~ 313 (895)
T KOG2076|consen 234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE 313 (895)
T ss_pred HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999832 1122233444455555555555555443310
Q ss_pred -----------------------------------C--------------------------------------------
Q 045024 157 -----------------------------------P-------------------------------------------- 157 (1173)
Q Consensus 157 -----------------------------------p-------------------------------------------- 157 (1173)
+
T Consensus 314 ~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~ 393 (895)
T KOG2076|consen 314 ASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKER 393 (895)
T ss_pred ccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccccc
Confidence 0
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 158 ------------------TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 158 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.+..++..|...|++.+|+..|..+....+. +..+|+.+|.+|..+|.+++|++.|+
T Consensus 394 e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~ 473 (895)
T KOG2076|consen 394 ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYE 473 (895)
T ss_pred chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 11567888999999999999999999999887664 46799999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH--HhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA--NTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
+++...|++.++...++.++..+|+ .++|.+.++.-...-.. -.........+.....+++...++...|.
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~-------~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGN-------HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCC-------HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998887 44444333331100000 00011111222222233333333222222
Q ss_pred hhhhchhhhh----------------------hhhhhhhHhhH------hhhhHHHHHHHHH--HHHHHhcCCCCH----
Q 045024 297 EERQSLEFDV----------------------ETFSASIVSWK------TTCLMAAISSKSS--YQRALYLAPWQA---- 342 (1173)
Q Consensus 297 ~~~~~l~~~~----------------------~~~~~~~~~~~------~~~~~~~~~A~~~--~~~al~l~p~~~---- 342 (1173)
.....+-..- ..+........ ...-....++... -..+.....-..
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 2111100000 00000000000 0000000000000 001111111112
Q ss_pred HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHH--HHHHH-Hhhc-ccHHHHHHHHHHHhc-----
Q 045024 343 NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQF--WVTLG-CLSN-YNGLKQHALIRGLQL----- 413 (1173)
Q Consensus 343 ~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~--~~~Lg-~~~~-~~~~a~~a~~kal~l----- 413 (1173)
+....+..++.+.+++++|......+... .....++.-..- +..+. .++. +++.+..++.-.+..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~------~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEA------YIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhh------hhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 34556677778888888886654432221 011111111101 11121 2222 666777766666655
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-hH--HHH
Q 045024 414 DVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-AE--FQI 490 (1173)
Q Consensus 414 ~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~~--~~~ 490 (1173)
+|.....|+..-......++-.-=...+.++...+|++..+.....|..+...+.+..|+..|.++...+|+ |- ..+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 666666776433444444554444555556666677774444433465667889999999999999999885 43 344
Q ss_pred HHHHHHHHhCC------CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCC---
Q 045024 491 GLAKLAKLSGH------LSSSQVFGAIQQAIQRGPH--YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTV--- 559 (1173)
Q Consensus 491 ~la~l~~~~g~------~~~~~A~~~l~~al~~~P~--~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~--- 559 (1173)
+++.+....+. ....+++..+.+..+..-. ...+.+++|..|...|-..-|+.+|++++......-..+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 44444433332 2234777788777776544 788999999999999999999999999976533221111
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 560 PNSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 560 ~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
...-...+-+||.-+|...|+...|.+++++.+
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 112234578889999999999999988887643
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=2.8e-20 Score=218.18 Aligned_cols=584 Identities=15% Similarity=0.096 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
...++..|..++..|+ +++|...+.++++.+|.++.+|+.+|.+|.+ .|+.+++...+-.|-.++|++.+.|..++..
T Consensus 139 l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGD-LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777888888987 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~ 176 (1173)
...+|++.+|+-+|.++++.+|.+.......+.+|.++|+...|+..|.+++...|.. .......+..+...++-
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999999932 22334457778888888
Q ss_pred HHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--cCCCHHH--------------------HH
Q 045024 177 SAAIKSYGRAIELDD--TSIFPLLESGNIFLMLGNFRKGVEQFQLALKI--SSENVSA--------------------HY 232 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a--------------------~~ 232 (1173)
+.|++.++.++.... ...+.+..++.++....+++.|.......... .+++... -+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 999999999998332 34566778999999999999998877665541 1111000 00
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH-HHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhh
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAE-ANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (1173)
.+-.+....+-.....++..+++ ..+. ............+....+.+
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~l-------l~~l~~~n~~~~d~~dL~~d~a~al------------------------- 424 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEAL-------LHFLVEDNVWVSDDVDLYLDLADAL------------------------- 424 (895)
T ss_pred cchhHhHhhhhhcccccchHHHH-------HHHHHHhcCChhhhHHHHHHHHHHH-------------------------
Confidence 00001111111111111121111 1111 00000111222222222222
Q ss_pred hhHhhHhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 312 SIVSWKTTCLMAAISSKSSYQRALYLAPW-QANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 312 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
...+.+.+|+..|..+....+. +..+|+.+|.+|..+|.+++| +..|.+++...|++.++.
T Consensus 425 -------~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A-----------~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 425 -------TNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA-----------IEFYEKVLILAPDNLDAR 486 (895)
T ss_pred -------HhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH-----------HHHHHHHHhcCCCchhhh
Confidence 2234477899999999887664 467899999999999999988 556889999999999999
Q ss_pred HHHHHhhcccHHHH---HHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCC-
Q 045024 391 VTLGCLSNYNGLKQ---HALIRGLQLDVS---------LADAWAHIGKLYGEVGEKKLARQAFDSARS-------IDPS- 450 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~---~a~~kal~l~p~---------~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~-------~~P~- 450 (1173)
..|+.++...|.-. +.+.....-++. +..+.....+++.+.|+.++=+..-...+. ..|+
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~ 566 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRN 566 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999988555444 444443323322 234567788888888887763322211111 0010
Q ss_pred ------------------------------------------------------ChhHHHHh---HHHHHHhcCCHHHHH
Q 045024 451 ------------------------------------------------------LALPWAGM---SADVQASESLVDDAF 473 (1173)
Q Consensus 451 ------------------------------------------------------~~~a~~~l---~a~~~~~~g~~~eA~ 473 (1173)
..+.|+.+ ...++.+.+++++|.
T Consensus 567 ~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl 646 (895)
T KOG2076|consen 567 KKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEAL 646 (895)
T ss_pred HHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11223321 244566888999999
Q ss_pred HHHHHHHhcCC---chHH--HHHHHHHHHHhCCCChHHHHHHHHHHHHh-------------------------------
Q 045024 474 ESCLRAVQILP---LAEF--QIGLAKLAKLSGHLSSSQVFGAIQQAIQR------------------------------- 517 (1173)
Q Consensus 474 ~~~~~al~~~p---~~~~--~~~la~l~~~~g~~~~~~A~~~l~~al~~------------------------------- 517 (1173)
.+...+++..- .++. -+....+.+.....+..+|...++-++..
T Consensus 647 ~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R 726 (895)
T KOG2076|consen 647 SVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLR 726 (895)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777522 1111 11111111111111233444444444333
Q ss_pred --------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC--------
Q 045024 518 --------GPHY-PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN-------- 580 (1173)
Q Consensus 518 --------~P~~-~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-------- 580 (1173)
+|++ +......|......+.+..|+..|-++ ....|++|. ......++-+...+++
T Consensus 727 ~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra---~~~~pd~Pl----~nl~lglafih~a~qr~v~~Rh~~ 799 (895)
T KOG2076|consen 727 LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA---FRQNPDSPL----INLCLGLAFIHLALQRRVSNRHAQ 799 (895)
T ss_pred HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH---HHhCCCCcH----HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333 333344566677788999999999988 455676554 1222333333333332
Q ss_pred HHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc-------cchhhhhHHHHHHHHHHh
Q 045024 581 ALDAVRECESLERQGM--LDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME-------QSSAAASVSFICRLLYHI 651 (1173)
Q Consensus 581 ~~eAi~~~~~~~~~~p--~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~-------~~~~~~~~~~la~l~~~~ 651 (1173)
.-+++..+.+..+... +..++.+++|++|...|-..-|+.+|+++|+..|..- -+-.-.+.+.+.-||-..
T Consensus 800 i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~S 879 (895)
T KOG2076|consen 800 IAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKS 879 (895)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccC
Confidence 4567777766655433 3577999999999999999999999999999764321 112235566777778888
Q ss_pred cChhhhhHHhhhC
Q 045024 652 SGLDSTINSILKM 664 (1173)
Q Consensus 652 g~~~~A~~~l~~~ 664 (1173)
|....|..++.++
T Consensus 880 Gn~~lArqil~ky 892 (895)
T KOG2076|consen 880 GNMQLARQILEKY 892 (895)
T ss_pred CcHHHHHHHHHhh
Confidence 8888888777654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2.3e-20 Score=232.00 Aligned_cols=471 Identities=10% Similarity=-0.070 Sum_probs=335.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 14 SLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 14 al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
..-..|+.+...+..+.+.++.|+ ++.|+..|+++++.+|.++.+...+..++.. .|+.++|+.++++++.-.|....
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHH
Confidence 344688999999999999999998 9999999999999999997555589999999 99999999999999944445555
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
....+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 566668899999999999999999999999999999999999999999999999999999999986654 5667777668
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHH--HHHHHHHHHHHHHhhcH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL--ASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--a~~~~~l~~~~~a~g~~ 251 (1173)
++..+|++.++++++.+|++..++..+..++...|-...|.+...+--.........+... +.-.++.+... ....
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~--~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP--TRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc--cccc
Confidence 8887899999999999999999999999999999999999876665322111111111111 11111111100 0001
Q ss_pred HHHHHHHHHHHHHHHHHhhhc---CChHHH-HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 252 RWGASLLEDACKVAEANTRLA---GNMSCI-WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 252 ~~A~~~l~~Al~~~~~~~~~~---~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
.+.....+.++..+....... |..... .....|... .....+.+.++
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~-----------------------------aL~~r~r~~~v 311 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG-----------------------------ALLVRHQTADL 311 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH-----------------------------HHHHhhhHHHH
Confidence 112223444444444433211 111011 111111111 11223456788
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHH
Q 045024 328 KSSYQRALYLA-PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHA 406 (1173)
Q Consensus 328 ~~~~~~al~l~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a 406 (1173)
+..|+..-... |--..+....|..|...++.++|... +..++...|..
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l-----------~~~~~~~~~~~-------------------- 360 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI-----------LSSLYYSDGKT-------------------- 360 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH-----------HHHHhhccccc--------------------
Confidence 89998877544 33445777888888888888777332 33333322210
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CChhHHHHhHHHHHHhcCCHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP---------------SLALPWAGMSADVQASESLVDD 471 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P---------------~~~~a~~~l~a~~~~~~g~~~e 471 (1173)
...|.+......|-..|...+++++|..++++..+..| +....... .+.++...|+..+
T Consensus 361 -----~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l-~a~~~~~~gdl~~ 434 (822)
T PRK14574 361 -----FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL-LVQSLVALNDLPT 434 (822)
T ss_pred -----cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH-HHHHHHHcCCHHH
Confidence 00123444456788888999999999999999887544 11222222 4556777888888
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 472 AFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARY 550 (1173)
Q Consensus 472 A~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~ 550 (1173)
|.+.+++.+...| ++.....++.+....|. +.+|...++.+...+|++..+...+|..+...|++++|....++++
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~--p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~- 511 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDL--PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI- 511 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH-
Confidence 8888888888888 55777777777777776 5688888888888899999999999999999999999999888774
Q ss_pred HhhcCCCCCC
Q 045024 551 AISSSSGTVP 560 (1173)
Q Consensus 551 l~~~~pe~~~ 560 (1173)
+..|++..
T Consensus 512 --~~~Pe~~~ 519 (822)
T PRK14574 512 --SRSPEDIP 519 (822)
T ss_pred --hhCCCchh
Confidence 55565443
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.8e-18 Score=194.77 Aligned_cols=540 Identities=12% Similarity=0.047 Sum_probs=317.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS 86 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~ 86 (1173)
|.....++++..|.++..|+.-+..-.. ...=...+.++++..|++...|- .... ..+.+.|...+.+|++
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~----~~~K~RVlRKALe~iP~sv~LWK----aAVe-lE~~~darilL~rAve 404 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLESD----TKNKKRVLRKALEHIPRSVRLWK----AAVE-LEEPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhhH----HHHHHHHHHHHHHhCCchHHHHH----HHHh-ccChHHHHHHHHHHHH
Confidence 4556677888888888888776654322 34455678888888888776663 2334 5556668888888888
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-----TSPH 161 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~ 161 (1173)
..|.+.+.|..++++ .-|+.|...+.++-+.-|.++..|..-+.+-...|+.+...+++.+.+..-. -+-+
T Consensus 405 ccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 405 CCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred hccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 888888887777665 3577788888888888888888888888888888888888777777664321 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDD---TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.|..-+......|..--+......++.+.- +.-..|..-+..+.+.+-++-|+..|..+++..|.....|...+..-
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 556566666656655555555555555432 23445566666666666666666666666666666665555444443
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...|. .+.-..++++|+...+ ....+|..........++
T Consensus 561 k~hgt-------~Esl~Allqkav~~~p-------kae~lwlM~ake~w~agd--------------------------- 599 (913)
T KOG0495|consen 561 KSHGT-------RESLEALLQKAVEQCP-------KAEILWLMYAKEKWKAGD--------------------------- 599 (913)
T ss_pred HhcCc-------HHHHHHHHHHHHHhCC-------cchhHHHHHHHHHHhcCC---------------------------
Confidence 33333 2222223333333332 223333333333222111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHH---HHHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWV---TLGC 395 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~---~Lg~ 395 (1173)
...|...+.++++.+|++.++|+.-..+......++.|.. .+.++....|... .|. .+-+
T Consensus 600 -----v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~-----------llakar~~sgTeR-v~mKs~~~er 662 (913)
T KOG0495|consen 600 -----VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD-----------LLAKARSISGTER-VWMKSANLER 662 (913)
T ss_pred -----cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH-----------HHHHHhccCCcch-hhHHHhHHHH
Confidence 2245556666666666666666666555555555555522 2333333333322 222 1223
Q ss_pred hhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHH
Q 045024 396 LSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFES 475 (1173)
Q Consensus 396 ~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~ 475 (1173)
+..+...+.+.++.+++..|+....|..+|+++.++++.+.|.+.|...++.-|..+..|+. ++.+-.+.|..-.|...
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll-LakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL-LAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH-HHHHHHHhcchhhHHHH
Confidence 33345555566666666666666666666666666666666666666666666666666665 45555556666666666
Q ss_pred HHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 045024 476 CLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISS 554 (1173)
Q Consensus 476 ~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~ 554 (1173)
++++.-.+|. ...++....+..+.|+ .++|.....++++..|++...|..-..+.-+-++-..++..+++. +.
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn--~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e~ 815 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGN--KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----EH 815 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----cC
Confidence 6666666663 3444455555555555 345666666666666666666665555555555555555554443 22
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 555 SSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 555 ~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
+| . ++...|.++....+++.|.+.|+++++.+|+..++|...=..+...|.-++-.++|.+...-.|.++
T Consensus 816 dp---h------Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 816 DP---H------VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred Cc---h------hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 11 1 4556666666666666666666666666666666665555555666666666666666555555443
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=9.8e-20 Score=230.60 Aligned_cols=457 Identities=14% Similarity=0.010 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-PDDSVSGEALCE 100 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-p~~~~a~~~La~ 100 (1173)
.|..+...+...|+ +++|+..|+.+....+ -+...+..+...+.. .++++.|...+..+.+.. ..+..++..+..
T Consensus 89 ~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~-~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIA-LKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45555566666666 9999999998876543 356788888888999 999999999998887643 224677888999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+..+ .+...+..+...+...|+.+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999998754 3567788999999999999999999999987644 3456777788888889999999
Q ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 180 IKSYGRAIELD-DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 180 ~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
.+.+..+++.. ..+..++..+...|.+.|++++|...|+++. +.+...|..+...|...|+ +
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~-------~------- 306 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGY-------S------- 306 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCC-------H-------
Confidence 99888887764 2356778888999999999999999998763 4466677777777776655 3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh--
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY-- 336 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-- 336 (1173)
++|++. |++..+
T Consensus 307 ~eA~~l------------------------------------------------------------------f~~M~~~g 320 (697)
T PLN03081 307 EEALCL------------------------------------------------------------------YYEMRDSG 320 (697)
T ss_pred HHHHHH------------------------------------------------------------------HHHHHHcC
Confidence 333332 222221
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-C
Q 045024 337 LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-V 415 (1173)
Q Consensus 337 l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p 415 (1173)
..| +...+..+..++...|.++++.. .+..+++.. +
T Consensus 321 ~~p-d~~t~~~ll~a~~~~g~~~~a~~------------------------------------------i~~~m~~~g~~ 357 (697)
T PLN03081 321 VSI-DQFTFSIMIRIFSRLALLEHAKQ------------------------------------------AHAGLIRTGFP 357 (697)
T ss_pred CCC-CHHHHHHHHHHHHhccchHHHHH------------------------------------------HHHHHHHhCCC
Confidence 123 44567777777777777776622 233333222 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL--PLAEFQIGLA 493 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~la 493 (1173)
.+..++..+...|.+.|++++|.+.|++..+ | +..+|.. ++..|.+.|+.++|+++|+++.+.. |+...+..+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~-lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNA-LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4677889999999999999999999998754 3 4567887 4558999999999999999988764 4444444444
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPH--YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~--~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
......|. .++|...|+.+.+..+- +...|..+..++.+.|++++|.+.++++ ...| ...+|..+
T Consensus 434 ~a~~~~g~--~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p-------~~~~~~~L 500 (697)
T PLN03081 434 SACRYSGL--SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKP-------TVNMWAAL 500 (697)
T ss_pred HHHhcCCc--HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCC-------CHHHHHHH
Confidence 44455555 67899999998875433 4567889999999999999999998754 1112 13478899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
...+...|+++.|...++++.+.+|.+...+..++.+|.+.|++++|.++++.+.+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999889999999999999999999999988763
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-20 Score=202.14 Aligned_cols=370 Identities=14% Similarity=0.095 Sum_probs=275.8
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEA 97 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~ 97 (1173)
.|+-.++..|.++.+.+. ...|+..|..++...|-+-.+|..++.+... ++.....+..-| .+...-+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~-~s~A~~sfv~~v~~~P~~W~AWleL~~lit~--------~e~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGL-LSLAIDSFVEVVNRYPWFWSAWLELSELITD--------IEILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhch-HHHHHHHHHHHHhcCCcchHHHHHHHHhhch--------HHHHHHHHhcCcccchHHHHHH
Confidence 356667777887777776 6778888888877778877788777766555 222233332334 33334555
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 98 LCELLEHGGKESLEVVVCREASDK-SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
++.++......++++.-++..... .|.+...-...|.+...+.|+++|+..|+...+.+|-..+-.-...++++-.++-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 666776667777888877777777 6777777777788888888888888888888888886655555555665555554
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
.+-.-.-+.+..++.-.++..--+|+.|...++.++|+.+|+++++++|....+|..+|.-|+.+.+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN------------- 379 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN------------- 379 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc-------------
Confidence 4444445556666666677777788888888888888888888888888888888777777766544
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh
Q 045024 257 LLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY 336 (1173)
Q Consensus 257 ~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 336 (1173)
...|+..|++|++
T Consensus 380 -------------------------------------------------------------------t~AAi~sYRrAvd 392 (559)
T KOG1155|consen 380 -------------------------------------------------------------------THAAIESYRRAVD 392 (559)
T ss_pred -------------------------------------------------------------------cHHHHHHHHHHHh
Confidence 2358888999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCC
Q 045024 337 LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVS 416 (1173)
Q Consensus 337 l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~ 416 (1173)
++|.|..+|+.+|.+|..++...=| ...|++|++..|+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~Ya------------------------------------------LyYfqkA~~~kPn 430 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYA------------------------------------------LYYFQKALELKPN 430 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHH------------------------------------------HHHHHHHHhcCCC
Confidence 9999999999999988765544322 3478999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLA 496 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~ 496 (1173)
++..|..||.+|.+.++.++|+.+|.+++.....+..++.. +|.+|.+.++..+|...|++.++...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~-LakLye~l~d~~eAa~~yek~v~~~~------------ 497 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR-LAKLYEELKDLNEAAQYYEKYVEVSE------------ 497 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH------------
Confidence 99999999999999999999999999999998877788888 88899999999999999998876420
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 497 KLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLAR 549 (1173)
Q Consensus 497 ~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl 549 (1173)
..| ...|+...+...|+.-+.+.+++++|..+-.+++
T Consensus 498 -~eg---------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 498 -LEG---------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred -hhc---------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 011 1124445566778888999999999988877663
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.2e-21 Score=223.81 Aligned_cols=308 Identities=20% Similarity=0.179 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHccC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSE-SKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
..+..+|..|..... +..+|+..|.+.-...++...++..+|..|+. +++|++|.++|+.+-+..|-..+..-.+..+
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-LIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 345555555543332 25889999998657777778888899999999 9999999999999999888777766666777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 181 (1173)
+....+--+--...+..+..+|+.|++|..+|.+|-.+++++.|++.|+++++++|+...++..+|.-+.....+|.|..
T Consensus 397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHH
Confidence 76666655555566777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 182 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+
T Consensus 477 ~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~------------------ 538 (638)
T KOG1126|consen 477 SFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR------------------ 538 (638)
T ss_pred HHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh------------------
Confidence 99999999999999999999999999999999999999999999888776666666665554
Q ss_pred HHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC
Q 045024 262 CKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ 341 (1173)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 341 (1173)
.++|+..|++|+.++|.+
T Consensus 539 --------------------------------------------------------------~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 539 --------------------------------------------------------------KDKALQLYEKAIHLDPKN 556 (638)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHhcCCCC
Confidence 346777788888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHH
Q 045024 342 ANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAW 421 (1173)
Q Consensus 342 ~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~ 421 (1173)
+-..+..+.++...+++++|.. .+++..++-|++..++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~------------------------------------------~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQ------------------------------------------ELEELKELVPQESSVF 594 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHH------------------------------------------HHHHHHHhCcchHHHH
Confidence 8888888888887777777733 3445555667788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 422 AHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 422 ~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
+.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 595 ~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 595 ALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88888888888888888888888888887544
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-19 Score=202.60 Aligned_cols=489 Identities=16% Similarity=0.108 Sum_probs=326.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+-+-+.. +.+|.-|+-.-+++..+. .++.-.+.+|+++.-.|++..|......- .+...+....+..+.++....+|
T Consensus 22 ~~r~~l~-q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 22 LVRDALM-QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 3334445 577777777777777666 66666777888888888777776665544 44555677777778888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEAL--GLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++|..++.+. ... .++-.+... +......+.. +..+. .....+..|.+|..+.+.++|...|.
T Consensus 99 ~~al~vl~~~-~~~-~~~f~yy~~~~~~~l~~n~~~-----------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 99 DQALLVLGRG-HVE-TNPFSYYEKDAANTLELNSAG-----------EDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHhccc-chh-hcchhhcchhhhceeccCccc-----------ccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 8887777644 110 001000000 1111111111 11111 23445678889999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQ-CINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAE 297 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~-~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 297 (1173)
+++..++.+.++...+....+..... ..-....+-+. ...+-.+..+...+ +.....+..
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~-~~~ed~e~l~~lye------------------l~~~k~~n~ 226 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM-LTKEDVERLEILYE------------------LKLCKNRNE 226 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh-hhhhHHHHHHHHHH------------------hhhhhhccc
Confidence 99999988888776665555443320 00000000000 00000000000000 000000000
Q ss_pred hhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHH
Q 045024 298 ERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMAL 377 (1173)
Q Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~ 377 (1173)
.... ..=+..+..-.+++++....+..+...+++.+- .+...
T Consensus 227 ~~~~---------------------------r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c-----------~kit~ 268 (611)
T KOG1173|consen 227 ESLT---------------------------RNEDESLIGLAENLDLLAEKADRLYYGCRFKEC-----------LKITE 268 (611)
T ss_pred cccc---------------------------cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH-----------HHHhH
Confidence 0000 000011111133556666666666666666665 33345
Q ss_pred HHHhhcCCCHHHHHH-HHHhhcccHHHHHHHH---HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 378 GALLLEGDNCQFWVT-LGCLSNYNGLKQHALI---RGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 378 ~al~~~p~~~~~~~~-Lg~~~~~~~~a~~a~~---kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
..++.+|-+...+.. +| .+...+.....|. +.+...|+.+..|+.+|..|...|++.+|..+|.++..+||....
T Consensus 269 ~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 666677766544433 34 3344444444443 556789999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 454 PWAGMSADVQASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC 532 (1173)
Q Consensus 454 a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~ 532 (1173)
+|++ .|.++.-.|..++|+..|..|.++-|.. .-.+-++.-+.+.++ ..-|...|.+++.+.|++|.++..+|.+.
T Consensus 348 aWl~-fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n--~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 348 AWLA-FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNN--LKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHH-HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhcc--HHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 9999 6779999999999999999999997732 122223333444555 35799999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 045024 533 EARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQL 612 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~ 612 (1173)
...+.|.+|..+|+.++..++...+ +.+.....+.+||.++.+.+++++||..|++++...|.+..++..+|.+|..+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~--e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll 502 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLN--EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLL 502 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccc--cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 9999999999999999855444321 23356778999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhcc
Q 045024 613 GKYDLALSMARNLASSVS 630 (1173)
Q Consensus 613 g~~~eA~~~~~~aL~~~p 630 (1173)
|+++.|++.|.++|-..|
T Consensus 503 gnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 503 GNLDKAIDHFHKALALKP 520 (611)
T ss_pred cChHHHHHHHHHHHhcCC
Confidence 999999999999999777
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.5e-21 Score=222.96 Aligned_cols=290 Identities=19% Similarity=0.223 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|+..|++.-...++...+...+|..|++..+ |++|..+|+.+-+..|-..+..-....+++. ..+--+--..-+..+
T Consensus 337 ~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~~p~rv~~meiyST~LWH-Lq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 337 EALNLFEKLPSHHYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRIEPYRVKGMEIYSTTLWH-LQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHhhHHhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 36899999767788888999999999999998 9999999999999999877666666677777 555444445556678
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
+.+|+.++.|..+|.+|.-+++.+.|+++|+++++++|+...++..+|.-+....+++.|..+|+.++..+|.+..+|+.
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..+.++..+++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~-- 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR-- 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAI 325 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (1173)
+++|+..++......|..+.++..+|.++..++. .+
T Consensus 573 ------------~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--------------------------------~~ 608 (638)
T KOG1126|consen 573 ------------YVEALQELEELKELVPQESSVFALLGKIYKRLGN--------------------------------TD 608 (638)
T ss_pred ------------hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--------------------------------ch
Confidence 6777777777778888888888888888877655 56
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 045024 326 SSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~ 343 (1173)
.|+..|.-|..++|.-..
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 788889999999997544
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3e-18 Score=187.10 Aligned_cols=372 Identities=15% Similarity=0.073 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Q 045024 90 DDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALG 167 (1173)
Q Consensus 90 ~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la 167 (1173)
.++..++..|.++...|....|+..+..++...|-+-.+|..++.+... ++.....+..-| .+...-..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 3445567777777777777788888777777777777777766665432 222333332233 2333445567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIEL-DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCI 246 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~ 246 (1173)
.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+.+.+.+|-..+-.-....++.-..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~--- 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND--- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---
Confidence 7777777888888888877776 677777777778888888888888888888888777554433333333322211
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHH
Q 045024 247 NLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAIS 326 (1173)
Q Consensus 247 a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1173)
...+..+
T Consensus 312 ------------~skLs~L------------------------------------------------------------- 318 (559)
T KOG1155|consen 312 ------------KSKLSYL------------------------------------------------------------- 318 (559)
T ss_pred ------------hHHHHHH-------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHH
Q 045024 327 SKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLK 403 (1173)
Q Consensus 327 A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a 403 (1173)
-+.+..++.-.++...-+|..|...++.++| +..++++++++|....+|..+|.-+. +...|
T Consensus 319 ----A~~v~~idKyR~ETCCiIaNYYSlr~eHEKA-----------v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 319 ----AQNVSNIDKYRPETCCIIANYYSLRSEHEKA-----------VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred ----HHHHHHhccCCccceeeehhHHHHHHhHHHH-----------HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHH
Confidence 0112222222233333333333333333333 23334444444444444444443333 44566
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 045024 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL 483 (1173)
Q Consensus 404 ~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~ 483 (1173)
+++|.+|++++|.+..+|+.||+.|.-++...=|+-+|++|+...|+++..|.. +|.+|.+.++.++|+..|.+++..+
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a-LG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA-LGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHhccHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999 7889999999999999998887654
Q ss_pred CchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 045024 484 PLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSH 563 (1173)
Q Consensus 484 p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~ 563 (1173)
. .+..++..+|.+|++.++..+|..+|++-++......+ ..+.
T Consensus 463 d-----------------------------------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~--~~~~ 505 (559)
T KOG1155|consen 463 D-----------------------------------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE--IDDE 505 (559)
T ss_pred c-----------------------------------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc--cchH
Confidence 2 35578899999999999999999999999875432221 1344
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 564 FQDISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 564 ~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
...+..-|+.-+.+.+++++|-.+..++..-++.
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 5556677999999999999999888877654433
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.1e-20 Score=216.00 Aligned_cols=298 Identities=15% Similarity=0.087 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA----FWAFRRLGY 134 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~ 134 (1173)
..+.+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.
T Consensus 37 ~~y~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLL-NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHh-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34445556666 6666666666666666666666666666666666666666666666665532221 234556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCC
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-----FPLLESGNIFLMLGN 209 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~ 209 (1173)
++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666666666666666666666555432 134456666666666
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
+++|+..|+++++.+|++..+++.++.++...|+ ++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~------------------------------------- 231 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGD-------YA------------------------------------- 231 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-------HH-------------------------------------
Confidence 6666666666666666665555555554444333 22
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ-ANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
+|+..|++++..+|.+ ..++..++.++...|++++|
T Consensus 232 ------------------------------------~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A------- 268 (389)
T PRK11788 232 ------------------------------------AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG------- 268 (389)
T ss_pred ------------------------------------HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH-------
Confidence 2333333333333332 23344555566666666555
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSID 448 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~ 448 (1173)
...++++++..|+... ...+|.++.+.|++++|+..|+++++.+
T Consensus 269 -----------------------------------~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 269 -----------------------------------LEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred -----------------------------------HHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2344555555665543 4788999999999999999999999999
Q ss_pred CCChhHHHHhHHHHHH--hcCCHHHHHHHHHHHHh
Q 045024 449 PSLALPWAGMSADVQA--SESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 449 P~~~~a~~~l~a~~~~--~~g~~~eA~~~~~~al~ 481 (1173)
|++...... +..... ..|+.++++..+++.++
T Consensus 313 P~~~~~~~l-~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 313 PSLRGFHRL-LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCHHHHHHH-HHHhhhccCCccchhHHHHHHHHHH
Confidence 987654422 221221 25688888888887765
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.1e-19 Score=214.84 Aligned_cols=306 Identities=18% Similarity=0.139 Sum_probs=247.5
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----HHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD----SVSGE 96 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~ 96 (1173)
.....+..|..+...++ +++|+..|.++++.+|+++.++..+|.++.. .|++++|+..+++++...+.. ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQ-PDKAIDLFIEMLKVDPETVELHLALGNLFRR-RGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34556777888888887 9999999999999999999999999999999 999999999999999864333 24688
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-----HLWEALGLAYH 171 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~ 171 (1173)
.+|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888653 35668899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHhhc
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLAKQCINLGA 250 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~~~~~a~g~ 250 (1173)
..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+. ..+..++.++...|+
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~------- 264 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD------- 264 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-------
Confidence 999999999999999999999999999999999999999999999999999887653 233444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHH
Q 045024 251 FRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSS 330 (1173)
Q Consensus 251 ~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 330 (1173)
.++|+..
T Consensus 265 -------------------------------------------------------------------------~~~A~~~ 271 (389)
T PRK11788 265 -------------------------------------------------------------------------EAEGLEF 271 (389)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 2356666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHH
Q 045024 331 YQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRG 410 (1173)
Q Consensus 331 ~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~ka 410 (1173)
++++++..|+... ...++.++...|++++| ...|+++
T Consensus 272 l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A------------------------------------------~~~l~~~ 308 (389)
T PRK11788 272 LRRALEEYPGADL-LLALAQLLEEQEGPEAA------------------------------------------QALLREQ 308 (389)
T ss_pred HHHHHHhCCCchH-HHHHHHHHHHhCCHHHH------------------------------------------HHHHHHH
Confidence 6777777786644 47788888888888777 3355666
Q ss_pred HhcCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh----hCCCC
Q 045024 411 LQLDVSLADAWAHIGKLYGE--VGEKKLARQAFDSARS----IDPSL 451 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~--~g~~e~A~~~f~~al~----~~P~~ 451 (1173)
++..|++......++..... .|+.++|+..+++.++ .+|++
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66677666544444433322 4578888887776664 45654
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=8.6e-20 Score=196.60 Aligned_cols=479 Identities=15% Similarity=0.090 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-----SPHLWEA 165 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~ 165 (1173)
.+++.|+.-|.....+.+|+..|+-+++. .|+....-.++|.++++..+|.+|+++|+-++..-|. ....+.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 45889999999999999999999988754 5777777788999999999999999999999988774 2557788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc--CC---------CHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS--SE---------NVSAHYGL 234 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------~~~a~~~l 234 (1173)
+|..+.+.|+|+.|+..|+.+++..|+.. +-+++..+++..|+-++-.+.|.+++.+. |+ ++.. ..+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHH
Confidence 99999999999999999999999999865 44678889999999999999999998752 11 1111 011
Q ss_pred HHHHHHHHHHHHH--hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhh
Q 045024 235 ASGLLGLAKQCIN--LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSAS 312 (1173)
Q Consensus 235 a~~~~~l~~~~~a--~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (1173)
-... .... ... ..+-..|....-.+.++...........+.-|.. ..-
T Consensus 360 ~eai-~nd~-lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl------e~l---------------------- 409 (840)
T KOG2003|consen 360 NEAI-KNDH-LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL------ESL---------------------- 409 (840)
T ss_pred HHHH-hhHH-HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH------HHH----------------------
Confidence 1111 1000 000 0011111111122222211111111111111110 000
Q ss_pred hHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC--HHHH
Q 045024 313 IVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN--CQFW 390 (1173)
Q Consensus 313 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~--~~~~ 390 (1173)
++-..- |--.++-.+.+..+.+.|+++.|... + +.++...+. ..+-
T Consensus 410 -------------k~s~~~-------~la~dlei~ka~~~lk~~d~~~aiei-----------l-kv~~~kdnk~~saaa 457 (840)
T KOG2003|consen 410 -------------KASQHA-------ELAIDLEINKAGELLKNGDIEGAIEI-----------L-KVFEKKDNKTASAAA 457 (840)
T ss_pred -------------HHhhhh-------hhhhhhhhhHHHHHHhccCHHHHHHH-----------H-HHHHhccchhhHHHh
Confidence 000000 11112223344455566666655332 1 111111111 1222
Q ss_pred HHHHHhhc-----ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh
Q 045024 391 VTLGCLSN-----YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS 465 (1173)
Q Consensus 391 ~~Lg~~~~-----~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~ 465 (1173)
++|..+++ +...+++.-..++.++.-++.+..+.|.+-+..|++++|.+.|+.++.-+.....+.++ ++..+..
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~ 536 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEA 536 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHH
Confidence 23333322 33456667778888888888888888888888899999999999988888888888888 6768888
Q ss_pred cCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 466 ESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVS 544 (1173)
Q Consensus 466 ~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~ 544 (1173)
.|+.++|++.|-+.-.+-- ..+..+.++.++....+ ..+|++.+.++...-|++|..+..+|.+|-+.|+-.+|..+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led--~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED--PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC--HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 8999999988887666532 55777778887777666 56888899999999999999999999999999999988887
Q ss_pred HHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 545 YRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARN 624 (1173)
Q Consensus 545 ~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~ 624 (1173)
+-..-+. .|- ...+.-.||..|....-.++||.+|+++.-+.|........++.++.+.|+|.+|.+.|+.
T Consensus 615 ~ydsyry---fp~------nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 615 HYDSYRY---FPC------NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhcccc---cCc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7644222 232 2336778888888888889999999998888888888888888889999999999999998
Q ss_pred HhhhccccccchhhhhHHHHHHHHHHhc
Q 045024 625 LASSVSAMEQSSAAASVSFICRLLYHIS 652 (1173)
Q Consensus 625 aL~~~p~~~~~~~~~~~~~la~l~~~~g 652 (1173)
.-...| .+.+.+-.+.++.-..|
T Consensus 686 ~hrkfp-----edldclkflvri~~dlg 708 (840)
T KOG2003|consen 686 IHRKFP-----EDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhCc-----cchHHHHHHHHHhcccc
Confidence 888777 33355556666654444
No 38
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=2.9e-19 Score=187.35 Aligned_cols=328 Identities=16% Similarity=0.095 Sum_probs=264.3
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
+|.+..-++.+|..++..++ +.+|+..|..+++.+|++..+++..|.+|+. +|+-..|+..+.+++++.|+...+...
T Consensus 34 ~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence 56678889999999999998 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRA---FWAF------------RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~------------~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 162 (1173)
.|.++.++|++++|...|+.++..+|++ .++. ......+.-.|+...|+....+.+++.|-++..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 9999999999999999999999999954 2222 223344456799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+- .|-++.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864331 122211
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhH
Q 045024 243 KQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLM 322 (1173)
Q Consensus 243 ~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 322 (1173)
+ ..+.+...+++++ -+
T Consensus 268 K-------v~K~les~e~~ie---------------------------------------------------------~~ 283 (504)
T KOG0624|consen 268 K-------VVKSLESAEQAIE---------------------------------------------------------EK 283 (504)
T ss_pred H-------HHHHHHHHHHHHh---------------------------------------------------------hh
Confidence 1 1111111111110 01
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----HHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc
Q 045024 323 AAISSKSSYQRALYLAPWQANIYTDIA----ITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN 398 (1173)
Q Consensus 323 ~~~~A~~~~~~al~l~p~~~~~~~~la----~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~ 398 (1173)
.+.+++..+++.++.+|..+.+.++.- .|+...+
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~------------------------------------------ 321 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE------------------------------------------ 321 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC------------------------------------------
Confidence 133567777888888887544433221 1221111
Q ss_pred ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 399 YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 399 ~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
+.+.|++...+++..+|++..++...+..|+-...|+.|+..|++|.+.+|++..+.-+
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 33556667788888899999999999999999999999999999999999998666554
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.2e-19 Score=198.39 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
.|...|.+++..+|+++..|.++|.+|.++|++..|+...+.+++++|+...+|+.. |.++..+.+|++|.+.|.++++
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK-g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK-GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777777777777777777777777777777774 4466667777777766666666
Q ss_pred cCC
Q 045024 482 ILP 484 (1173)
Q Consensus 482 ~~p 484 (1173)
.+|
T Consensus 455 ~dp 457 (539)
T KOG0548|consen 455 LDP 457 (539)
T ss_pred cCc
Confidence 665
No 40
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=6.7e-18 Score=213.93 Aligned_cols=460 Identities=9% Similarity=-0.015 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREASDKSP-RAFWAFRRLGYL 135 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~ 135 (1173)
.|..+...+.. .|++++|+..|+.+....+ -+..++..+...+.+.++++.+...+..+.+..- .+...+..+...
T Consensus 89 ~~~~~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45555666666 7777777777777665432 2445566666677777777777777766655321 245666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|++.|++..+..+. +..++..+...+...|..+.+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 7777777777777776542 2 4556667777777777777777777776654432 3445555566666667776666
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 215 EQFQLALKISS-ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 215 ~~~~~al~~~p-~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
+.+..+.+..- .+...+..+...|.+.|+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------------------------------------------------- 274 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGD-------------------------------------------------- 274 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCC--------------------------------------------------
Confidence 66666555331 223344444444444333
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSE 373 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~ 373 (1173)
.++|...|++. .+.+...|+.+...|.+.|++++|...
T Consensus 275 ------------------------------~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~l--------- 312 (697)
T PLN03081 275 ------------------------------IEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCL--------- 312 (697)
T ss_pred ------------------------------HHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHH---------
Confidence 23344444432 234667788888888888888877432
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Q 045024 374 KMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQ--LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSID-PS 450 (1173)
Q Consensus 374 k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~--l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~-P~ 450 (1173)
|.+... ..| +..++..+...+.+.|++++|.+.+..+++.. +.
T Consensus 313 ---------------------------------f~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 313 ---------------------------------YYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred ---------------------------------HHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 333322 234 56789999999999999999999999999875 44
Q ss_pred ChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 045024 451 LALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYG 529 (1173)
Q Consensus 451 ~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg 529 (1173)
+...+.. +...|.+.|+.++|.+.|+++.+ |+...+..+...+...|+ .++|++.++++.+.... +...+..+.
T Consensus 359 d~~~~~~-Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~--~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 359 DIVANTA-LVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGR--GTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CeeehHH-HHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4555656 67799999999999999998865 555566677777777777 57999999999886432 667788889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 045024 530 LVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSL 609 (1173)
Q Consensus 530 ~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~ 609 (1173)
..+.+.|+.++|.++|+.+.+.....|+ ...|..+...|.+.|++++|.+.++++. ..| +...|..+..++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~ 504 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTAC 504 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHH
Confidence 9999999999999999988543233332 2258889999999999999999988752 223 355788899999
Q ss_pred HHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCC
Q 045024 610 WQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKG 667 (1173)
Q Consensus 610 ~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~ 667 (1173)
...|+++.|...++++++..|. ....+..++.++...|+.++|.++++.+.+.
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~-----~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPE-----KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999987773 3457888999999999999999877765543
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.86 E-value=1.6e-16 Score=203.09 Aligned_cols=476 Identities=11% Similarity=0.002 Sum_probs=279.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 28 LGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 28 lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
+-..+.+.|+ +++|+..|+.+...+. .+...+..+...+.. .|..++|...|+.... | +...+..+...+.+.
T Consensus 376 ~y~~l~r~G~-l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 376 AYNRLLRDGR-IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhC
Confidence 3334445565 7888888888776543 233344455566677 7888888887776543 3 456677777778888
Q ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPR-AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 183 (1173)
|++++|...++++.+.... +...+..+...|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|++.|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 8888888888887766433 567777788888888888888888888776543 35777888888888888888888888
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 184 GRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKI----SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 184 ~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
++..+..- .+..++..+...+.+.|++++|.+.|+++... .|+ ...+..+...+.+.|+ +++|.+.|
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~-------ldeA~elf 602 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ-------VDRAKEVY 602 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC-------HHHHHHHH
Confidence 87765432 24667777888888888888888888877652 333 3445555555555444 33333333
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcC
Q 045024 259 EDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLA 338 (1173)
Q Consensus 259 ~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 338 (1173)
++..+.+
T Consensus 603 -------------------------------------------------------------------------~~M~e~g 609 (1060)
T PLN03218 603 -------------------------------------------------------------------------QMIHEYN 609 (1060)
T ss_pred -------------------------------------------------------------------------HHHHHcC
Confidence 3222222
Q ss_pred -CCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh--hcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHh
Q 045024 339 -PWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL--LEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQ 412 (1173)
Q Consensus 339 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~--~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~ 412 (1173)
+.+...|..+...|.+.|++++|...+. .... ..|+ ...+..+...+. +...+.+.+.++.+
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~-----------eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYD-----------DMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHH-----------HHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2233444444444444444444422211 1111 1222 222222222222 22233444555543
Q ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc--CCchH
Q 045024 413 LD-VSLADAWAHIGKLYGEVGEKKLARQAFDSARSI--DPSLALPWAGMSADVQASESLVDDAFESCLRAVQI--LPLAE 487 (1173)
Q Consensus 413 l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~--~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~--~p~~~ 487 (1173)
.. +.+..++..+...|.+.|++++|.+.|+++.+. .|+ ...|.. +...|.+.|++++|.++|+++... .|+..
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~-LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNA-LITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 32 236677788888888888888888888877653 343 345555 555777888888888888877654 45555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHH
Q 045024 488 FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQD 566 (1173)
Q Consensus 488 ~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~ 566 (1173)
.+..+...+...|+ .++|...+.++.+.... +...+..+..++. +++++|....+.++..
T Consensus 756 Ty~sLL~a~~k~G~--le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--------------- 816 (1060)
T PLN03218 756 TYSILLVASERKDD--ADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--------------- 816 (1060)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---------------
Confidence 55555554555554 46777777777775322 3444444433322 2455555544433211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
+.+......+..++|+..|+++++.+..+ ...+..+-.++...+..+.+...++.+
T Consensus 817 ---~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 817 ---DSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred ---hccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 11112222233456888888887776443 234433334556666666666666654
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.5e-18 Score=191.10 Aligned_cols=424 Identities=14% Similarity=0.103 Sum_probs=280.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
...|...+..|+|+.|+.+|..++.++|.+...+.+...+|..+|+|++|.+.-.+.++++|+.+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH-hchHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKL-HGDIQLT 288 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~-~g~~~~~ 288 (1173)
|++|+..|.+.++.+|+|.....+++.++..... . + +.+.. ..+|.. .++....
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~---~-~------~~~~~---------------p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYA---A-D------QLFTK---------------PYFHEKLANLPLTN 140 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHH---h-h------hhccC---------------cHHHHHhhcChhhh
Confidence 8888888888888888888777777776622111 0 0 00000 000000 0000000
Q ss_pred HhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHh-------
Q 045024 289 YAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEA------- 361 (1173)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA------- 361 (1173)
....+.+.....+.+..+|.+...+..--.+....|.....
T Consensus 141 --------------------------------~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~ 188 (539)
T KOG0548|consen 141 --------------------------------YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYA 188 (539)
T ss_pred --------------------------------hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccc
Confidence 00001111112222222232221111100000000000000
Q ss_pred -------hhhhh-----hhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 362 -------YGHYQ-----SAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 362 -------~~~~~-----~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
....+ .....-........ .-........+|...+ +...+++.|.+++.++ .+...+.+.+.
T Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~--~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA 265 (539)
T KOG0548|consen 189 SGIEILASMAEPCKQEHNGFPIIEDNTEERR--VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAA 265 (539)
T ss_pred cccccCCCCCCcccccCCCCCccchhHHHHH--HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHH
Confidence 00000 00000000000000 0001122334554444 5667889999999999 88888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC------hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSL------ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSG 500 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~------~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g 500 (1173)
+|+..|.+.+.+...+++++..-+. ...-+..+|..+...++++.|+.+|.+++...-.++....+..
T Consensus 266 ~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~------ 339 (539)
T KOG0548|consen 266 VYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE------ 339 (539)
T ss_pred HHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH------
Confidence 9999999999998888887754332 1111222566788889999999999999887655544443332
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 501 HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 501 ~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
.++++...+...-.+|.-..-....|..++..|+|..|+..|.+++ ..+|+ .+..|.|.|-+|.+.|.
T Consensus 340 ---~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI---kr~P~------Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 340 ---AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI---KRDPE------DARLYSNRAACYLKLGE 407 (539)
T ss_pred ---HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH---hcCCc------hhHHHHHHHHHHHHHhh
Confidence 2466666777777788877777788999999999999999999985 44444 34589999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 581 ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 581 ~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+..|++.+++.++.+|....+++.-|.++..+.+|++|++.|+.+++.+|.
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999998873
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.9e-18 Score=188.14 Aligned_cols=436 Identities=14% Similarity=0.059 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
|..|+-+-+++..+. .+|.-.+.+|+++.- .|++++|......- .+...+....+..+.++.+..++++|..++.+.
T Consensus 32 y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~-~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~ 108 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT-NDPADIYWLAQVLYL-GRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRG 108 (611)
T ss_pred hhHHHHHHHHHHhcc-CChHHHHHHHHHHHh-hhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555555555444 444444555666666 55555555444332 334444455555566666666666666555521
Q ss_pred ------HhhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 119 ------SDKSPR-------------------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 119 ------l~~~p~-------------------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
+..+|. .....+..|.+|....+.++|...|.+++..++.+.++...+....+-.
T Consensus 109 ~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt 188 (611)
T KOG1173|consen 109 HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLT 188 (611)
T ss_pred chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc
Confidence 111111 1233456677777778888888888888887777766655443332221
Q ss_pred C--------C------HHHHHHHHHHHHHh-------------CC--------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 174 G--------M------FSAAIKSYGRAIEL-------------DD--------TSIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 174 g--------~------~~~A~~~~~~al~~-------------~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
- . ..+=.+..+...++ .| ++++.....+..++..+++.+..+.++
T Consensus 189 ~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 189 AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 1 0 00001111111110 11 356677788888999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhh
Q 045024 219 LALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 219 ~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
..++.+|-+...+.....++..+|+ ..+-..+
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~--------------~n~Lf~l---------------------------------- 300 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGK--------------SNKLFLL---------------------------------- 300 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcc--------------cchHHHH----------------------------------
Confidence 9999999887765444446666555 1111111
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
=.+.++..|+.+-.|+.+|..|...|++.+| ++.+.+
T Consensus 301 --------------------------------sh~LV~~yP~~a~sW~aVg~YYl~i~k~seA-----------Rry~SK 337 (611)
T KOG1173|consen 301 --------------------------------SHKLVDLYPSKALSWFAVGCYYLMIGKYSEA-----------RRYFSK 337 (611)
T ss_pred --------------------------------HHHHHHhCCCCCcchhhHHHHHHHhcCcHHH-----------HHHHHH
Confidence 1345667788888888888888888888877 455667
Q ss_pred HHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHH
Q 045024 379 ALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPW 455 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~ 455 (1173)
+..++|....+|...|..+. ..+++..+|..|-++-|+.-.....+|.-|.+.++++.|...|.+|+.+.|++|...
T Consensus 338 at~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 338 ATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred HhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhh
Confidence 77888888888888887766 445677788999988888888888899999999999999999999999999998888
Q ss_pred HHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 456 AGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR 535 (1173)
Q Consensus 456 ~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~ 535 (1173)
.. +|.+....+.+.+|..+|+.++..-+ ......+.....+.++|-++.+.
T Consensus 418 ~E-lgvvay~~~~y~~A~~~f~~~l~~ik----------------------------~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 418 HE-LGVVAYTYEEYPEALKYFQKALEVIK----------------------------SVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred hh-hhheeehHhhhHHHHHHHHHHHHHhh----------------------------hccccccchhHHHHhHHHHHHHH
Confidence 87 55566688999999999988773211 11111223445679999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 045024 536 SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYA 606 (1173)
Q Consensus 536 g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la 606 (1173)
+.+++|+..|++++.+ .+....++..+|-+|..+|+++.|++.|.+++-+.|++.-+-..|+
T Consensus 469 ~~~~eAI~~~q~aL~l---------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL---------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHHHc---------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999766 3334458999999999999999999999999999999966554444
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2e-18 Score=186.18 Aligned_cols=477 Identities=16% Similarity=0.101 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----cHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVS--LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-----AFWAFR 130 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~--~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~ 130 (1173)
.+++.++.-|.. ...+.+|+..|+-.++ ..|+.......+|.++++..++.+|+.+|+-++..-|. ....+.
T Consensus 202 svl~nlaqqy~~-ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 202 SVLFNLAQQYEA-NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHhhh-hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 578889999999 8899999999998875 45777777889999999999999999999999998885 256778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCh-HHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--D---------TSI-FPLL 198 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p---------~~~-~a~~ 198 (1173)
++|..+.+.|.|+.|+..|+..++..|+.. +-+++..+++..|+-++-.+.|.+.+.+. | +++ ..+.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 899999999999999999999999999754 55678889999999999999999998751 1 111 1111
Q ss_pred HHH--HHHH---HcCChHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhc
Q 045024 199 ESG--NIFL---MLGNFRKGVEQFQLALKI-SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLA 272 (1173)
Q Consensus 199 ~la--~~~~---~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~ 272 (1173)
+-+ .-+. ...+-..|.++.-.+.++ .|--.. -+..| +++.++.+.. ....+-..++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~-~fa~g---------------~dwcle~lk~-s~~~~la~dle 422 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAP-DFAAG---------------CDWCLESLKA-SQHAELAIDLE 422 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccccc-chhcc---------------cHHHHHHHHH-hhhhhhhhhhh
Confidence 111 1111 112222333333333332 121100 00000 0111111100 00001111111
Q ss_pred CChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 045024 273 GNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ-ANIYTDIAIT 351 (1173)
Q Consensus 273 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~la~~ 351 (1173)
.+.+.-+... +++++|++.++-.-+.+... ..+-+++..+
T Consensus 423 i~ka~~~lk~---------------------------------------~d~~~aieilkv~~~kdnk~~saaa~nl~~l 463 (840)
T KOG2003|consen 423 INKAGELLKN---------------------------------------GDIEGAIEILKVFEKKDNKTASAAANNLCAL 463 (840)
T ss_pred hhHHHHHHhc---------------------------------------cCHHHHHHHHHHHHhccchhhHHHhhhhHHH
Confidence 1111111111 23445666655444433322 2234555555
Q ss_pred HHHHh--hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 352 SDLIY--SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 352 ~~~~g--~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
++.+| ++.+| ......++..+.-++.++.+.|.+.+ +.+.+.+.|..++..+....++++++|.
T Consensus 464 ~flqggk~~~~a-----------qqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 464 RFLQGGKDFADA-----------QQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred HHHhcccchhHH-----------HHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 55443 34444 34456778888888888888887766 5667888899999999989999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCCChH
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP-LAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.+..+|+.++|+++|-+.-.+--+++.+.+. ++.+|....+..+|++++.++..+-| +|...-.++.++-..|+- .
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~q-ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk--s 609 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQ-IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK--S 609 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch--h
Confidence 9999999999999999988888888888888 78899999999999999999999988 567777889998888874 4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi 585 (1173)
+|...+-......|.+.+..-.+|..|....-+++|+.+|+++. + . .|........++.++.+.|+|..|.
T Consensus 610 qafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa-l--i------qp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 610 QAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-L--I------QPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred hhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-h--c------CccHHHHHHHHHHHHHhcccHHHHH
Confidence 88888888888899999999999999999999999999999993 2 2 2333445667899999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCh
Q 045024 586 RECESLERQGMLDAEVLQVYAFSLWQLGKY 615 (1173)
Q Consensus 586 ~~~~~~~~~~p~~~~~~~~la~a~~~~g~~ 615 (1173)
+.|+.+-+..|.+.+.+-.+.++.-.+|-.
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999999999999999998889888888754
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.2e-15 Score=166.55 Aligned_cols=532 Identities=13% Similarity=0.064 Sum_probs=309.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
|+..+..+.-+...|...|+--.. ++++..|...|++|+..+-.+...|...+.+-++......|..++++++..-|.-
T Consensus 62 fEd~irrnR~~~~~WikYaqwEes-q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEES-QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 333444444445555555555555 5666666666666665555555555556665555555666666666666655555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
-..|+....+-..+|+...|.++|++-+...|+ ..+|......-.+.+..+.|...|++.+-..|+ +..|...+..-.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~ 218 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEE 218 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHH
Confidence 555555555555556666666666665555553 445555555555555556666666655544443 445555555555
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhch
Q 045024 206 MLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD 284 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~ 284 (1173)
+.|+..-|...|+++++.-.++.. ...-.+.+....+. ..++.|..+|.-|++..++.. ...++.....
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q-----kE~ERar~iykyAld~~pk~r-----aeeL~k~~~~ 288 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ-----KEYERARFIYKYALDHIPKGR-----AEELYKKYTA 288 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCccc-----HHHHHHHHHH
Confidence 566666666666655554333222 11112222222211 223444444444444333210 0111111111
Q ss_pred HHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhh
Q 045024 285 IQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364 (1173)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 364 (1173)
.....|+. .+..+.+.+ +-.-.|+..++.+|.+.++|+....+....|+.+.-
T Consensus 289 fEKqfGd~--------------~gIEd~Iv~----------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~I--- 341 (677)
T KOG1915|consen 289 FEKQFGDK--------------EGIEDAIVG----------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRI--- 341 (677)
T ss_pred HHHHhcch--------------hhhHHHHhh----------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHH---
Confidence 11111110 000011110 122346777888888888888776665544443332
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCc---------HHHHHHHHHH-HHHcCCH
Q 045024 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSL---------ADAWAHIGKL-YGEVGEK 434 (1173)
Q Consensus 365 ~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~---------~~a~~~Lg~~-y~~~g~~ 434 (1173)
.+.|++|+..-|.. ...|.+.+.. -....+.
T Consensus 342 ---------------------------------------re~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 342 ---------------------------------------RETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred ---------------------------------------HHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34455555433321 1233333221 2345788
Q ss_pred HHHHHHHHHHHhhCCCC----hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 435 KLARQAFDSARSIDPSL----ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGA 510 (1173)
Q Consensus 435 e~A~~~f~~al~~~P~~----~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~ 510 (1173)
+.+.++|+.++++-|.. +..|+. .+....++.+...|...+-.++..-|.+....++..+....+++ +.....
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlm-yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef--DRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLM-YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF--DRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHH-HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH--HHHHHH
Confidence 99999999999998864 445555 45566688999999999999999999888888888877777774 578889
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045024 511 IQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECES 590 (1173)
Q Consensus 511 l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~ 590 (1173)
|++.++..|.+..+|...|.+-...|+.+.|..+|+-|++. |. .+.|. ..+-.....-...|.++.|...|++
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q----p~-ldmpe--llwkaYIdFEi~~~E~ekaR~LYer 532 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ----PA-LDMPE--LLWKAYIDFEIEEGEFEKARALYER 532 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC----cc-cccHH--HHHHHhhhhhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999988532 11 11111 2444555666788999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHhhhccccccchhhhhHHHHHHH--HHHhc
Q 045024 591 LERQGMLDAEVLQVYAFSLW-----QLG-----------KYDLALSMARNLASSVSAMEQSSAAASVSFICRL--LYHIS 652 (1173)
Q Consensus 591 ~~~~~p~~~~~~~~la~a~~-----~~g-----------~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l--~~~~g 652 (1173)
+++..+... +|+..|.--. +.| ....|..+|+++.......+. +...+..+-+.. --..|
T Consensus 533 lL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 533 LLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKNMEETFG 610 (677)
T ss_pred HHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcC
Confidence 998876655 6654444333 444 567889999988765433332 222333333332 23345
Q ss_pred ChhhhhHHhhhCCCCc
Q 045024 653 GLDSTINSILKMPKGL 668 (1173)
Q Consensus 653 ~~~~A~~~l~~~p~~~ 668 (1173)
...+...+-.++|+.+
T Consensus 611 ~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 611 TEGDVERVQSKMPKKV 626 (677)
T ss_pred chhhHHHHHHhccHHH
Confidence 5555555556666555
No 46
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.84 E-value=7.4e-16 Score=197.07 Aligned_cols=417 Identities=9% Similarity=-0.002 Sum_probs=279.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
.++.+.+......++ ...+..+-..+.+ .|++++|+..|+...+.+. .+...+..+...+...|..++|...++.+
T Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 355 NSLAAYNGGVSGKRK-SPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhHHHhccccCCCCC-chHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 334444444433333 3333444445557 7888889988888876553 23334455666777888888888888776
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFP 196 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a 196 (1173)
.. | +...|..+...+...|++++|...|+++.+... .+...+..+...|.+.|+.++|.+.|+++.+... .+..+
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 54 4 467778888888888888888888888877643 3577888888888888899888888888877653 26778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKIS--SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
|..+...|.+.|++++|++.|+++.+.. |+ ...+..+...+.+.|+ +++
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~-------~de--------------------- 560 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGA-------VDR--------------------- 560 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC-------HHH---------------------
Confidence 8888888888888888888888886543 33 4455555555555444 322
Q ss_pred hHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHh----cCCCCHHHHHHHHH
Q 045024 275 MSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALY----LAPWQANIYTDIAI 350 (1173)
Q Consensus 275 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----l~p~~~~~~~~la~ 350 (1173)
|...|.+... +.| +...|..+..
T Consensus 561 ----------------------------------------------------A~~lf~eM~~~~~gi~P-D~vTynaLI~ 587 (1060)
T PLN03218 561 ----------------------------------------------------AFDVLAEMKAETHPIDP-DHITVGALMK 587 (1060)
T ss_pred ----------------------------------------------------HHHHHHHHHHhcCCCCC-cHHHHHHHHH
Confidence 2233333322 234 3567777777
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYG 429 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~ 429 (1173)
.|.+.|++++|.. .|+++.+.+ +.++..|..+...|.
T Consensus 588 ay~k~G~ldeA~e------------------------------------------lf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 588 ACANAGQVDRAKE------------------------------------------VYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHHCCCHHHHHH------------------------------------------HHHHHHHcCCCCChHHHHHHHHHHH
Confidence 8888887777733 233333322 336678888888888
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCCChH
Q 045024 430 EVGEKKLARQAFDSARSI--DPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL--PLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~--~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
+.|++++|...|+++.+. .|+ ...+.. +...+.+.|++++|.++++.+.+.. |+...+..+...+...|+ .+
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD-~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~--~e 701 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSA-LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WK 701 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HH
Confidence 888888888888888775 454 334444 5667888888888888888887753 444555556666666665 45
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 045024 506 QVFGAIQQAIQRG-PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDA 584 (1173)
Q Consensus 506 ~A~~~l~~al~~~-P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eA 584 (1173)
+|...|+++.+.. ..+...|+.+...|.+.|++++|.++|+++... ...|+ ..++..+...+.+.|++++|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd-------~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPN-------TITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHHCCCHHHH
Confidence 7777777776542 225666777777788888888888888766322 11121 23566677777778888888
Q ss_pred HHHHHHHHHcCCCC
Q 045024 585 VRECESLERQGMLD 598 (1173)
Q Consensus 585 i~~~~~~~~~~p~~ 598 (1173)
.+.+.++.+.+..+
T Consensus 774 ~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 774 LDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHHHHHcCCCC
Confidence 88888877765544
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=1.2e-17 Score=175.25 Aligned_cols=322 Identities=16% Similarity=0.104 Sum_probs=257.6
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|.+..-++.+|.-++. .|++..|+..|..|++.+|++-.+++..|.+|..+|+-.-|+..+.+++++.|+...+....
T Consensus 34 ~~advekhlElGk~lla-~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLA-RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677889999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSP---HLW------------EALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
|.+++++|++++|+..|+.+++.+|++. ++. ......++..|+...|+......+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 9999999999999999999999999542 222 2233445567999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSC 277 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~ 277 (1173)
...+.+|...|+...|+..++.+-++..++.+.++.++..+...|+ .+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd--------------~~------------------ 240 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD--------------AE------------------ 240 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh--------------HH------------------
Confidence 9999999999999999999999999999999999998888888777 12
Q ss_pred HHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 045024 278 IWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYS 357 (1173)
Q Consensus 278 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~ 357 (1173)
.++...++.++++|++...+-..- ....
T Consensus 241 ------------------------------------------------~sL~~iRECLKldpdHK~Cf~~YK----klkK 268 (504)
T KOG0624|consen 241 ------------------------------------------------NSLKEIRECLKLDPDHKLCFPFYK----KLKK 268 (504)
T ss_pred ------------------------------------------------HHHHHHHHHHccCcchhhHHHHHH----HHHH
Confidence 234445666677776544332111 1111
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHcCC
Q 045024 358 LNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAW----AHIGKLYGEVGE 433 (1173)
Q Consensus 358 ~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~----~~Lg~~y~~~g~ 433 (1173)
..+. +.. .+++++. .......+..++.++.+|..+.+. -.+-.++..-|+
T Consensus 269 v~K~-------les----~e~~ie~---------------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 269 VVKS-------LES----AEQAIEE---------------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHH-------HHH----HHHHHhh---------------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 1111 000 0011100 011233455677777777744433 346678888999
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 434 KKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 434 ~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
+.+|+.....++.++|+++.++.. .+.+|.-...|++|+..|+++.+.+++.
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~d-RAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCD-RAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999988 7889999999999999999999998853
No 48
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=2.5e-16 Score=182.42 Aligned_cols=439 Identities=17% Similarity=0.110 Sum_probs=276.4
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CCCHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--PDDSVSGE 96 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--p~~~~a~~ 96 (1173)
.+++.++-.+...+...|+ |+.+.+.|++++...-...+.|+.++..|.. .|....|+...+..+... |+++..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~-f~~lae~fE~~~~~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQ-FEVLAEQFEQALPFSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhcccccCCCcchHHH
Confidence 3577777777877777776 9999999999987777778899999999999 999999999999998887 77777766
Q ss_pred HHHHHH-HHCCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 045024 97 ALCELL-EHGGKESLEVVVCREASDKSP-----RAFWAFRRLGYLQLHH-----------KKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 97 ~La~~~-~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~-----------g~~~~A~~~l~~al~~~p~~ 159 (1173)
..+.++ ...|..++++.+..+++..-. -.+..+..+|.+|..+ ....++++.++++++.+|+|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 666665 556888999999999887321 1356777777777532 23577888999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
+.+.+.++.-|..+++.+.|.....+++++++ +++.+|..++.++...+++.+|+...+.++...|+|.........+-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 99999999999999999999999999999954 56889999999999999999999999999988888765444433333
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...+ +.++++.....-+.+.+.......... .|......+. + .
T Consensus 558 ~~~~-------~~e~~l~t~~~~L~~we~~~~~q~~~~-----~g~~~~lk~~----------l---------------~ 600 (799)
T KOG4162|consen 558 LTFN-------DREEALDTCIHKLALWEAEYGVQQTLD-----EGKLLRLKAG----------L---------------H 600 (799)
T ss_pred hhcc-------cHHHHHHHHHHHHHHHHhhhhHhhhhh-----hhhhhhhhcc----------c---------------c
Confidence 3333 344444444443333332221111100 0000000000 0 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHH-------HHH
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ-------FWV 391 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~-------~~~ 391 (1173)
....+..+|+..++++..+ ... +...+.. + .+ .......|+... .|.
T Consensus 601 la~~q~~~a~s~sr~ls~l--------------~a~--~~~~~~s--e------~~--Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSL--------------VAS--QLKSAGS--E------LK--LPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred cCcccccccchhhHHHHHH--------------HHh--hhhhccc--c------cc--cCcccccCCCCchHHHHHHHHH
Confidence 0000011111222111111 000 0000000 0 00 001111122211 122
Q ss_pred HHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCC
Q 045024 392 TLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESL 468 (1173)
Q Consensus 392 ~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~ 468 (1173)
..+..+. +.+.+..|+.++-.++|..+..|+..|.++...|+.++|.+.|..++.++|+++..... +|.++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A-la~~lle~G- 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA-LAELLLELG- 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHhC-
Confidence 2222221 33344445555555555555555555555555555555555555555555555555555 444555555
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 469 VDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 469 ~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
+-...+....+..+++.+|.++.+|+.+|.+..+.|+.++|.+.|+-+
T Consensus 733 --------------------------------~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 733 --------------------------------SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred --------------------------------CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 333334445777888889999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 045024 549 RYAISSSS 556 (1173)
Q Consensus 549 l~l~~~~p 556 (1173)
+.+-...|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 87755544
No 49
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.81 E-value=8.6e-15 Score=166.71 Aligned_cols=451 Identities=14% Similarity=0.059 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.+.++..+.+|+..|++++.+-..|..+...|+ -++|......++..++.+..+|..+|.++.. .++|++|+++|+.|
T Consensus 24 kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-KEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCYRNA 101 (700)
T ss_pred HhHHHHHHHHHHhCCccchhHHhccchhhcccc-hHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 446888899999999999999999999999998 7999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC--
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY---PTS-- 159 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~-- 159 (1173)
+.++|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|...++...+.. |..
T Consensus 102 l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 102 LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988877654 322
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 160 ---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 160 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
.........+....|.+++|.+.+..--...-+........+.++.++|++++|...|...+..+|++...+..+-.
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 34556667778889999988888766443333445566778999999999999999999999999999887776666
Q ss_pred HHHHHHHHHHHhhcHHHHH-HHHHHHHHHHHHHhhhcCChHHHHHHhchHH-HHHhhcc-chh-hhhhchhhhhhhhhhh
Q 045024 237 GLLGLAKQCINLGAFRWGA-SLLEDACKVAEANTRLAGNMSCIWKLHGDIQ-LTYAKCF-PWA-EERQSLEFDVETFSAS 312 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~-~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~-~~~~~l~~~~~~~~~~ 312 (1173)
++..... ..++. ..|...-+.++.......- ......|+-. ..+..+. +.. ...+..-.+...+...
T Consensus 262 ~lgk~~d-------~~~~lk~ly~~ls~~y~r~e~p~Rl--plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKD-------MLEALKALYAILSEKYPRHECPRRL--PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHhh-------hHHHHHHHHHHHhhcCcccccchhc--cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 5541111 11111 2233322222221110000 0000111000 0000000 000 0000000000000000
Q ss_pred hHhhHhhhhHHHHHHHHHHHHHHhcC------------CCCH--HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 313 IVSWKTTCLMAAISSKSSYQRALYLA------------PWQA--NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 313 ~~~~~~~~~~~~~~A~~~~~~al~l~------------p~~~--~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
...+ .-.++=+..|...+.-. |..+ ..++.++.-+...|+++.| ...+..
T Consensus 333 ----p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A-----------~~yId~ 396 (700)
T KOG1156|consen 333 ----PEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA-----------LEYIDL 396 (700)
T ss_pred ----hhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH-----------HHHHHH
Confidence 0000 00112222233333222 2222 3355666777777777776 445667
Q ss_pred HHhhcCCCHHHHHHHHHhhccc---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYN---GLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL---- 451 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~---~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~---- 451 (1173)
++...|..++.+...|.++... ..|...+..+.++|..|..+...-|.-..+.++.++|.+...+--+..-+-
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L 476 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNL 476 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhH
Confidence 8888888888888888777644 455566788888877666666677888888888888888776655433211
Q ss_pred ---hhHHHHh-HHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 452 ---ALPWAGM-SADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 452 ---~~a~~~l-~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
.-.|+.. -|.+|.++|++.+|+.-|..+-.+
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 1134331 267788888888888777665554
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=3.2e-16 Score=181.52 Aligned_cols=418 Identities=16% Similarity=0.080 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLN--PQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..+.+.|++++..--...+.|+.++..|...|. -..|+..+++..... |+++..+...+.++.+..|..++++.+..
T Consensus 340 ~~lae~fE~~~~~~~~~~e~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~ 418 (799)
T KOG4162|consen 340 EVLAEQFEQALPFSFGEHERWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQ 418 (799)
T ss_pred HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHH
Confidence 345788999988888888999999999999988 599999999999887 88888887777777665899999999999
Q ss_pred HHHhhCC-----CCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 83 RAVSLSP-----DDSVSGEALCELLEHGG-----------KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 83 ~al~~~p-----~~~~a~~~La~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
+++.... -.+..+..+|..|..+- ...+++..++++++.+|+|+.+.+.++.-|..+++.+.|+
T Consensus 419 kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl 498 (799)
T KOG4162|consen 419 KAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSAL 498 (799)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHH
Confidence 9998431 12345777777774331 2568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 147 QSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 147 ~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
...+++++.++ +++.+|..++.++...+++.+|+...+.+++-.|+|.........+-...|+.++|+......+..-.
T Consensus 499 ~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 499 DYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 99999999954 77899999999999999999999999999999999888888888888889999999999998887654
Q ss_pred CCHHHHHHHH--HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchh
Q 045024 226 ENVSAHYGLA--SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLE 303 (1173)
Q Consensus 226 ~~~~a~~~la--~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 303 (1173)
....+...++ ......+....+..+..++......+......-.... .. .. .........
T Consensus 579 ~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~s----------e~-------~Lp~s~~~~ 640 (799)
T KOG4162|consen 579 AEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA-GS----------EL-------KLPSSTVLP 640 (799)
T ss_pred hhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc-cc----------cc-------ccCcccccC
Confidence 4333332222 1111111111222222233333333322222000000 00 00 000000000
Q ss_pred hhhhhhhhh-----hHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 304 FDVETFSAS-----IVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 304 ~~~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
.....+... .........+..++|..++.++-.+.|..+..|+..|.++...|...+|
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA----------------- 703 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA----------------- 703 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH-----------------
Confidence 000000000 1111112223345666777777777777777777777777777666666
Q ss_pred HHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChhHHH
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ--AFDSARSIDPSLALPWA 456 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~--~f~~al~~~P~~~~a~~ 456 (1173)
.++|..++.++|+++.+...+|.++.+.|+..-|.. .+..+++++|.++++|+
T Consensus 704 -------------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 704 -------------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred -------------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 345566666666666666666666666666666655 66666666666666666
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p 484 (1173)
+ +|.++...|+.++|.+.|..++++.+
T Consensus 759 ~-LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 759 Y-LGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred H-HHHHHHHccchHHHHHHHHHHHhhcc
Confidence 6 55566666666666666666666643
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2e-14 Score=157.11 Aligned_cols=461 Identities=14% Similarity=0.104 Sum_probs=345.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
+.|+..+..+.-+...|...|.--..++++..|..+|++++..+..+...|...+.+-++.+....|..++++++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44556666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
-...|+....+-..+|+...|.+.|++-++..|+ ..+|......-.+.++.+.|...|++.+-..|+ ...+.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wi------ 211 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWI------ 211 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHH------
Confidence 9999999999999999999999999999999987 568888888889999999999999999988876 33443
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
+.++.....|...-+...|+.|++.+.+.... ..+....+.+..
T Consensus 212 -kyarFE~k~g~~~~aR~VyerAie~~~~d~~~----e~lfvaFA~fEe------------------------------- 255 (677)
T KOG1915|consen 212 -KYARFEEKHGNVALARSVYERAIEFLGDDEEA----EILFVAFAEFEE------------------------------- 255 (677)
T ss_pred -HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHH-------------------------------
Confidence 34444555566777888888888876552211 111111111111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQA--NIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCL 396 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~--~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~ 396 (1173)
....++.|...|+-++..-|.+. .++......--+-|+...- ..++
T Consensus 256 -~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI---------------Ed~I---------------- 303 (677)
T KOG1915|consen 256 -RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI---------------EDAI---------------- 303 (677)
T ss_pred -HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh---------------HHHH----------------
Confidence 11225578888999998888763 2222222111111111100 0000
Q ss_pred hcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---------hHHHHhHHHHHHhcC
Q 045024 397 SNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA---------LPWAGMSADVQASES 467 (1173)
Q Consensus 397 ~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~---------~a~~~l~a~~~~~~g 467 (1173)
.+.-.--|++.+..+|.|.++|+..-.+-...|+.+.-.+.|++|+..-|... ..|++.+...-....
T Consensus 304 ---v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 304 ---VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred ---hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01122347888999999999999999999999999999999999998777532 345554333334688
Q ss_pred CHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 468 LVDDAFESCLRAVQILPLA-----EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 468 ~~~eA~~~~~~al~~~p~~-----~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~ 542 (1173)
|.+.+.++|+.++++-|.. ..++..+.+..++.++ ..|...+-.++...|.+-.. -....+-.+.++++...
T Consensus 381 d~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l--~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNL--TGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHccc--HHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHH
Confidence 9999999999999998854 4455556666666664 48889999999998876543 45556777889999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCChHHHHH
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE--VLQVYAFSLWQLGKYDLALS 620 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~--~~~~la~a~~~~g~~~eA~~ 620 (1173)
..|++-+ +-.|++ -.+|...|..-..+|+.+.|...|+-++.+...+.. .|-.+..--...|.++.|..
T Consensus 458 kLYEkfl---e~~Pe~------c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 458 KLYEKFL---EFSPEN------CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHHHHHH---hcChHh------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 9999884 444443 448899999999999999999999999877666544 33445555667899999999
Q ss_pred HHHHHhhhcc
Q 045024 621 MARNLASSVS 630 (1173)
Q Consensus 621 ~~~~aL~~~p 630 (1173)
+|+++|+..+
T Consensus 529 LYerlL~rt~ 538 (677)
T KOG1915|consen 529 LYERLLDRTQ 538 (677)
T ss_pred HHHHHHHhcc
Confidence 9999998654
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=4.6e-17 Score=199.57 Aligned_cols=215 Identities=15% Similarity=0.040 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENS--------ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRA 77 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA 77 (1173)
.|+..|+++++.+|+++.++..+|.++...+ +++++|+..++++++++|+++.++..+|.++.. .|++++|
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~~~~A 357 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSEYIVG 357 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH
Confidence 4688888888888888888888887765322 226788888888888888888888888888888 8888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 045024 78 IKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY- 156 (1173)
Q Consensus 78 ~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~- 156 (1173)
+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.+++..|++++|+..+++++...
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888888888888888888888888888877766666667777888888888888888764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
|+++..+..+|.++...|++++|+..+.++....|....+...++..|...|+ +|...++++++.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 67788888888888888888888888888887778777788888888887774 666666666553
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.3e-15 Score=164.09 Aligned_cols=404 Identities=15% Similarity=0.109 Sum_probs=299.5
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|.+....+..+.+|...++ -+.|+.......... ..+..-..++..+.. .++..++.-.|...+...|--..+...+
T Consensus 94 ~~~~e~~r~~aecy~~~~n-~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~-g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGN-TDMAIETLLQVPPTL-RSPRINLMLARLQHH-GSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred cccHHHHHHHHHHHHHHcc-chHHHHHHhcCCccc-cchhHHHHHHHHHhc-cccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 3456667777888877776 577777666543211 235566666777777 6666666666776666555433332222
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH-HHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFR-RLGYLQLHHKKWS--EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~~~~~~g~~~--~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
...-. .|. +.+-- --.++...|.+++.+. ..+..+...++.. -+..++-+-....|+|...+..+|.+++..|+
T Consensus 171 l~l~v-~g~-e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 171 LELGV-NGN-EINSL-VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred HHHhh-cch-hhhhh-hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 22111 111 11111 1122344555544432 2344444444444 44455556667788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGA 255 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~ 255 (1173)
+++|+..|+++.-++|....+.-..|.++...|+++.-...-...+..+.....-|+--+..+....+
T Consensus 248 n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~------------ 315 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKK------------ 315 (564)
T ss_pred chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhh------------
Confidence 99999999999999999999999999999999999998888888888876666666655665555555
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH
Q 045024 256 SLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL 335 (1173)
Q Consensus 256 ~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 335 (1173)
++.|+.+..+.+...+.....+...|......++ .++|+-.|+.+.
T Consensus 316 --~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------------------------~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 316 --FERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------------------------HTQAVIAFRTAQ 361 (564)
T ss_pred --HHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------------------------hHHHHHHHHHHH
Confidence 6777777788888888888888888888877665 568999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH-Hhhc----ccHHHHHHHHHH
Q 045024 336 YLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG-CLSN----YNGLKQHALIRG 410 (1173)
Q Consensus 336 ~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg-~~~~----~~~~a~~a~~ka 410 (1173)
.+.|.+.+.|..+..+|...|++.+|. -+...+++.-|.++..+..+| .++. ...+|...++++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~-----------~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEAN-----------ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHH-----------HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 999999999999999999999999983 345677788899999999997 5554 345778889999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH
Q 045024 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 487 (1173)
+.++|....+-..++.++...|.++.++..+++.+...|+. ..-..+|.++...+.+++|++.|..++.++|..+
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999999999999999999998886 3333378888899999999999999999999653
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1.2e-16 Score=195.86 Aligned_cols=225 Identities=12% Similarity=0.002 Sum_probs=199.5
Q ss_pred CCCCHH--HHHHHHHHHHHcc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CCHHHHHHHHHHH
Q 045024 18 NPDDPS--LHLDLGLHLWENS--ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS---------IDTQRAIKCYQRA 84 (1173)
Q Consensus 18 ~P~~~~--~~~~lg~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~---------g~~~eA~~~~~~a 84 (1173)
.|.+.+ .++..|...+... +++++|+..|+++++.+|+++.++..+|.++.. . +++++|...++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~-~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLS-MAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHcCCcccchHHHHHHHHHHHH
Confidence 444444 3556676554332 236899999999999999999999999998774 3 3489999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELD-DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...++++....|....+...++..+...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77878888999999999999999875 77888999999999999999999999999988888888888888888777664
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.1e-15 Score=159.44 Aligned_cols=458 Identities=14% Similarity=0.060 Sum_probs=307.2
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHhC--------------------CCCHHHHHHHH
Q 045024 10 QLEDSLEANPD--DPSLHLDLGLHLWENSE---SKEKAAEHFVIAAKLN--------------------PQNAVAFRYLG 64 (1173)
Q Consensus 10 ~l~~al~~~P~--~~~~~~~lg~~~~~~~~---~~~~A~~~~~~al~~~--------------------p~~~~a~~~lg 64 (1173)
.+..+...+|. .++..+.++..++...- .|..|...|..++... |.+.+..+..+
T Consensus 25 ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~a 104 (564)
T KOG1174|consen 25 LLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAA 104 (564)
T ss_pred HhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHH
Confidence 34444445554 34555666665544322 2666777777666431 33456778888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 65 HYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 65 ~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
.+|.. .++-+.|+......... ...+..-..++..+-.-++..++.-.+...+...|--......+... .-+-.+.
T Consensus 105 ecy~~-~~n~~~Ai~~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l--~v~g~e~ 180 (564)
T KOG1174|consen 105 ECYRQ-IGNTDMAIETLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLEL--GVNGNEI 180 (564)
T ss_pred HHHHH-HccchHHHHHHhcCCcc-ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHH--hhcchhh
Confidence 99999 99999888876654321 13355566777777777776677777777766555322222111111 1111111
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWE---ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+ ..--.++...|..+..+. .++.++.....+..+..++-.-...-|++...+..+|.+++..|++++|+..|+++.
T Consensus 181 ~-S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 181 N-SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred h-hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 1 111223445555554443 234444444444455555556666778999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
-++|.+....-..|..+...|+ +++.-.+.
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~--------------~e~~~~L~------------------------------------ 289 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGG--------------CEQDSALM------------------------------------ 289 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccC--------------HhhHHHHH------------------------------------
Confidence 9999887766556665555554 22211111
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
...+........-|+--+..+...+++..|
T Consensus 290 ------------------------------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rA-------------------- 319 (564)
T KOG1174|consen 290 ------------------------------DYLFAKVKYTASHWFVHAQLLYDEKKFERA-------------------- 319 (564)
T ss_pred ------------------------------HHHHhhhhcchhhhhhhhhhhhhhhhHHHH--------------------
Confidence 111111111222233333333322333222
Q ss_pred hcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 382 LEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...-+++++.+|++..++...|.++...|+.++|+-.|+.|+.+.|..-+.+-+ +..
T Consensus 320 ----------------------L~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G-L~h 376 (564)
T KOG1174|consen 320 ----------------------LNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG-LFH 376 (564)
T ss_pred ----------------------HHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH-HHH
Confidence 234567888899999999999999999999999999999999999999999999 677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~ 540 (1173)
+|...|++.||...-+.++..-|. ......++.....-.-..-++|...+++.+.+.|.+..+-..++.++...|.+++
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 999999999999999998888774 3444444322111111223789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVY 605 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~l 605 (1173)
++..+++.+.. .|+. ..+..||.++...+.+.+|.+.|..++.++|.+..++-.+
T Consensus 457 ~i~LLe~~L~~---~~D~-------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 457 IIKLLEKHLII---FPDV-------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhh---cccc-------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999999633 3332 2688999999999999999999999999999998776433
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=1.7e-16 Score=178.70 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 045024 5 GALLLQLEDSLEANP---D-DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P---~-~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~ 80 (1173)
+.++..+.+++...| + .+..++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~ 120 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-RALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 347899999996444 3 47789999999999987 9999999999999999999999999999999 9999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+...+.+.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 99999999999999999999999999999999999999999999874222 12234567899999999988775543222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC-CCHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRA-------IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS-ENVSAHY 232 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~ 232 (1173)
|. .+.++...|+...+ ..++.+ .++.|....+++.+|.++...|++++|+.+|+++++.+| +.++..+
T Consensus 200 --~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 200 --WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred --cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 22 35556667776443 233333 355667788999999999999999999999999999997 5555555
Q ss_pred HHHHHHH
Q 045024 233 GLASGLL 239 (1173)
Q Consensus 233 ~la~~~~ 239 (1173)
.+.....
T Consensus 276 ~~~e~~~ 282 (296)
T PRK11189 276 ALLELAL 282 (296)
T ss_pred HHHHHHH
Confidence 4444333
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=5e-18 Score=190.73 Aligned_cols=265 Identities=22% Similarity=0.235 Sum_probs=117.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAA-KL-NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al-~~-~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
+..|+ ...+.+|.+++..|+ +++|.+.+.+.+ .. .|+++..|..+|.+... .++++.|+..|++++..++.++.
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~-~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~-~~~~~~A~~ay~~l~~~~~~~~~ 79 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGD-YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS-LGDYDEAIEAYEKLLASDKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 34555 233477999998887 999999997665 44 48899999999999999 99999999999999999999888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--PTSPHLWEALGLAYH 171 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~ 171 (1173)
.+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... |.++..+..+|.++.
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 88888888 799999999999999887654 46667778888999999999999999977655 678889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcH
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~ 251 (1173)
+.|+.++|++.|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|+
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------- 229 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------- 229 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---------
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--------
Confidence 999999999999999999999999999999999999999999999998888888888888888888888776
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHH
Q 045024 252 RWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSY 331 (1173)
Q Consensus 252 ~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 331 (1173)
.++|+..|
T Consensus 230 ------------------------------------------------------------------------~~~Al~~~ 237 (280)
T PF13429_consen 230 ------------------------------------------------------------------------YEEALEYL 237 (280)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------cccccccc
Confidence 34677888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhh
Q 045024 332 QRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQ 366 (1173)
Q Consensus 332 ~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 366 (1173)
+++++.+|+++.....+|.++...|+.++|.....
T Consensus 238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999999966543
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=2.4e-15 Score=177.90 Aligned_cols=201 Identities=10% Similarity=0.029 Sum_probs=125.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-VSGEALCELLEH 104 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-~a~~~La~~~~~ 104 (1173)
...|...+..|+ ++.|.+.+.++.+..|+....+...|.++.. .|++++|..++.++.+..|++. .+....+.++..
T Consensus 88 ~~~glla~~~g~-~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGD-YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 344555555555 6777777777666666666666666677666 7777777777777766666664 345555666777
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE----ALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----~la~~~~~~g~~~~A~ 180 (1173)
.|+++.|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.... ....-+...+..+++.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 777777777777777777777777777777777777777777777666665443333221 1111123333444445
Q ss_pred HHHHHHHHhCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 181 KSYGRAIELDD----TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 181 ~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 56666666555 3666666677777777777777777777776666654
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=5.9e-14 Score=159.98 Aligned_cols=473 Identities=15% Similarity=0.098 Sum_probs=293.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
++..+.-.+. .++|...++..+..++..|++++..-..|..+...|+-++|....+.++..++.+...|..+|.++...
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3333444445 588888888888888888999888888888888899999999999999998888889999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
++|++|+.+|+.|+.+.|+|...+..++.+..++|+++.....-.+.++..|.....|...+..+...|++..|....+.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999988999999999999999999888887
Q ss_pred HHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhh
Q 045024 220 ALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEE 298 (1173)
Q Consensus 220 al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 298 (1173)
..+.....++ -.+....+.+.........|.++++.+.+.+-....-+-. ......
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-------a~~e~k---------------- 225 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-------AFEETK---------------- 225 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------HHhhhH----------------
Confidence 7665421111 1123333444444445555555555444333222111111 111111
Q ss_pred hhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHH
Q 045024 299 RQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALG 378 (1173)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~ 378 (1173)
......++..++|...|...+..+|++...+..+-.++....+.-++. ..++..
T Consensus 226 ----------------a~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~l----------k~ly~~ 279 (700)
T KOG1156|consen 226 ----------------ADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEAL----------KALYAI 279 (700)
T ss_pred ----------------HHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHH----------HHHHHH
Confidence 122233455779999999999999999888877776664111111111 011222
Q ss_pred HHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhh------
Q 045024 379 ALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQ--LDVSLADAWAHIGKLYGEVGEK---KLARQAFDSARSI------ 447 (1173)
Q Consensus 379 al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~--l~p~~~~a~~~Lg~~y~~~g~~---e~A~~~f~~al~~------ 447 (1173)
.-+..| .......++....+...-...+.+.+. +..+-|.+...+-.+|..-... ++=+..|...++-
T Consensus 280 ls~~y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 280 LSEKYP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred HhhcCc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 212222 212222222111111111112222211 1111222233333332221100 0000111111110
Q ss_pred ------CCCChhHHHHh-HHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 045024 448 ------DPSLALPWAGM-SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPH 520 (1173)
Q Consensus 448 ------~P~~~~a~~~l-~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~ 520 (1173)
.|-....|... ++.-+-..|+++ .|...++.++...|.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~-----------------------------------~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-----------------------------------VALEYIDLAIDHTPT 403 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHH-----------------------------------HHHHHHHHHhccCch
Confidence 12222223221 222333444444 555566666666688
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD-- 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-- 598 (1173)
.++.+...|.|+...|+.++|...++.+.++ +.. . ..+...-|....+.++.++|.+++.+.-+.+..-
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~el---D~a----D--R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~ 474 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQEL---DTA----D--RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN 474 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cch----h--HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence 8888999999999999999999999988543 110 1 1133356888889999999999998886665321
Q ss_pred ----H-HHH--HHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 599 ----A-EVL--QVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 599 ----~-~~~--~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
. ..| .--|.+|.++|++.+|+.-|..+-.
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 1 133 3357889999999999988876644
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=3.3e-15 Score=176.64 Aligned_cols=299 Identities=12% Similarity=-0.014 Sum_probs=222.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-HLWEALGLAYHRL 173 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~ 173 (1173)
....|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 355566777889999999999998888888878888888999999999999999999988888774 4666678899999
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRW 253 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~ 253 (1173)
|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++.....+- .....+. +..
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~~-------l~~ 238 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLE-QKAEIGL-------LDE 238 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHH-------HHH
Confidence 99999999999999999999999999999999999999999999988877544443221110 0111111 000
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHH
Q 045024 254 GASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQR 333 (1173)
Q Consensus 254 A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 333 (1173)
+ ..+++...+.+
T Consensus 239 ~--------------------------------------------------------------------~~~~~~~~L~~ 250 (409)
T TIGR00540 239 A--------------------------------------------------------------------MADEGIDGLLN 250 (409)
T ss_pred H--------------------------------------------------------------------HHhcCHHHHHH
Confidence 0 00112233444
Q ss_pred HHhcCC----CCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHH----HHHHHHHhhc-ccHHHH
Q 045024 334 ALYLAP----WQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQ----FWVTLGCLSN-YNGLKQ 404 (1173)
Q Consensus 334 al~l~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~----~~~~Lg~~~~-~~~~a~ 404 (1173)
+.+..| +++.++..++..+...|++++| .+.+.++++..|++.. .+...+.+.. +...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A-----------~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSA-----------QEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH-----------HHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 444444 4777777888888877777777 4446677777777764 2222222221 345667
Q ss_pred HHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 045024 405 HALIRGLQLDVSLA--DAWAHIGKLYGEVGEKKLARQAFD--SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV 480 (1173)
Q Consensus 405 ~a~~kal~l~p~~~--~a~~~Lg~~y~~~g~~e~A~~~f~--~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al 480 (1173)
+.++++++.+|+++ .....+|.++.+.|++++|.++|+ ++++.+|+... +.. ++.++.+.|+.++|.++|++++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~-La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAM-AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999 889999999999999999999999 57778898765 445 6789999999999999999886
Q ss_pred hc
Q 045024 481 QI 482 (1173)
Q Consensus 481 ~~ 482 (1173)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 54
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.3e-17 Score=187.33 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 5 GALLLQLEDSLEA--NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 5 ~aAi~~l~~al~~--~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
.+|++.+.+.+.. +|+++..|..+|.+....++ +++|+..|++++..++.++..+..++.+ .. .+++++|...++
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~-~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~-~~~~~~A~~~~~ 101 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD-YDEAIEAYEKLLASDKANPQDYERLIQL-LQ-DGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc-cc-cccccccccccc
Confidence 4468999765544 48899999999999988887 9999999999999999999998888888 67 899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS--PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
++.+..+ ++..+..+..++...|+++++...++++.... +.++..|..+|.++.+.|++++|+..|+++++.+|+++
T Consensus 102 ~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 102 KAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp -----------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred ccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9988664 56777788889999999999999999987655 67889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
.+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|+++++.+|+++.....+|.++..
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHH
Q 045024 241 LAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.|+ .++|..++.++.+
T Consensus 261 ~g~-------~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 261 AGR-------KDEALRLRRQALR 276 (280)
T ss_dssp -----------------------
T ss_pred ccc-------ccccccccccccc
Confidence 877 6666665555544
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=9e-16 Score=166.52 Aligned_cols=203 Identities=19% Similarity=0.227 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..+...++ +++|+..++++++.+|++..++..+|.++.. .|++++|+..|+++++..|.+..++..+|.
T Consensus 30 ~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGD-LEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 46788999999998887 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKS--PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
++...|++++|+..+++++... |.....+..+|.++...|++++|...+++++..+|+++..+..+|.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998753 45567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
|+..++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999888888888899999999999999998887766543
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=2e-15 Score=152.46 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
..+...+|.-|++.|+ +..|...++++++.+|++..+|..++.+|.. .|+.+.|.+.|++|+.++|++.+++.+.|..
T Consensus 35 a~arlqLal~YL~~gd-~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGD-YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-LGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 4678899999999998 9999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 102 LEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
+..+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|+++++.+|+++.....++..++..|+|..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999999875 2346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
...+++.....+.....+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999998888888888888889999999999888888888888887654
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=176.53 Aligned_cols=254 Identities=19% Similarity=0.247 Sum_probs=211.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
+..|..+++.|+ ..+|+-.|+.+++.+|.+.++|..||.+... .++-..|+..++++++++|++..++..||..|...
T Consensus 289 f~eG~~lm~nG~-L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-NE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGD-LSEAALAFEAAVKQDPQHAEAWQKLGITQAE-NENEQNAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHhhChHHHHHHHHhhhHhhh-ccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 678999999998 9999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRR-------LGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~-------la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~ 176 (1173)
|.-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999999999887753211110 00011111224455677777878888 7899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
++|+.+|+.+|...|++...|..||-.+..-.+.++|+..|++++++.|....+++++|..++.+|. |++|..
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-------ykEA~~ 519 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-------YKEAVK 519 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-------HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777 777777
Q ss_pred HHHHHHHHHHHHhhhcC---ChHHHHHHhchHHHH
Q 045024 257 LLEDACKVAEANTRLAG---NMSCIWKLHGDIQLT 288 (1173)
Q Consensus 257 ~l~~Al~~~~~~~~~~~---~~~~~~~~~g~~~~~ 288 (1173)
+|-.|+..-++...-.. ....+|..+..+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~ 554 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA 554 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 77777776665322111 123456555544433
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=4.5e-14 Score=166.07 Aligned_cols=75 Identities=20% Similarity=0.175 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 406 a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
..++.++..|+++..+..+|.++...|++++|.++|+++++..|++.. +.. ++.++.+.|+.++|.++|++++.+
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~-La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAW-LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555667778888888888888888888888888888888888644 223 566788888888888888888765
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=8.5e-15 Score=158.83 Aligned_cols=197 Identities=19% Similarity=0.175 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+..+..+|..+.. .|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 30 ~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLE-QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 46889999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGY--PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
+...|++++|+..+++++... |.....+..+|.++...|++++|...++++++.+|++..++..+|.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999854 456778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLED 260 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~ 260 (1173)
...+++++...|.++..+..++.++...|+ .++|..+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGD-------VAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-------HHHHHHHHHH
Confidence 999999999988887777666666655554 5555544433
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4.9e-14 Score=165.81 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 432 GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAI 511 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l 511 (1173)
++++++++..++.++.+|+++..++. .|.++...|++++|.+.|+++++..|+...+..++.+....|+ .++|...+
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~-lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~--~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWST-LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK--PEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 45555555555555555555544444 3444445555555555555555555554444444444444444 34455555
Q ss_pred HHHHH
Q 045024 512 QQAIQ 516 (1173)
Q Consensus 512 ~~al~ 516 (1173)
++.+.
T Consensus 385 ~~~l~ 389 (398)
T PRK10747 385 RDGLM 389 (398)
T ss_pred HHHHh
Confidence 55444
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=9e-15 Score=164.78 Aligned_cols=177 Identities=14% Similarity=0.012 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNP----QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~ 114 (1173)
.+.++..+.+++...| ..+..++.+|.++.. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5788888888885433 236778889999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 115 CREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 115 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
|+++++++|++..++..+|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+++.+...+...
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 99999999998888889999998899999999999999998888874222 12234556788899988877665433222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+. .+.++...|+..++ ..++.+.
T Consensus 200 --~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 200 --WG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred --cH-HHHHHHHccCCCHH-HHHHHHH
Confidence 21 35555667776554 3444444
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=1.6e-10 Score=131.53 Aligned_cols=608 Identities=12% Similarity=0.070 Sum_probs=385.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------cCCHHHHHHHHHH
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF-------SIDTQRAIKCYQR 83 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-------~g~~~eA~~~~~~ 83 (1173)
|+.-+..+|.+...|...-.... +.-..+-...|+++++.-|.+...|+..-..-... ...|+.--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~--~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKA--GSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHc--cCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 55666678888888876665443 33236677788999999999888887665433320 1235556667777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 84 AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
++-.--+-+..|.........+|+...-...|.+++..-|- +...|-..-......+-.+-++..|++.++.+|...
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~- 172 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR- 172 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH-
Confidence 77766677888999999999999999999999999888774 345555555556677778899999999999988764
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHHH---HHHHHHHHhhcCCCHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD-------DTSIFPLLESGNIFLMLGNFRKG---VEQFQLALKISSENVSAH 231 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~a~ 231 (1173)
......+...++.++|.+.+...+..+ +.+...|..+..+..+.-+.-.. -..++..+...++
T Consensus 173 --eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD----- 245 (835)
T KOG2047|consen 173 --EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD----- 245 (835)
T ss_pred --HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH-----
Confidence 344566778899999999988877543 44566677776666554333222 2344555555554
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHH-----Hh--hccc-hhhhhhchh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLT-----YA--KCFP-WAEERQSLE 303 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~--~~~~-~~~~~~~l~ 303 (1173)
.+|.....+++++...|.|++|.+.|++++......... ..++.....+... +. .... -.+...++.
T Consensus 246 -q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF----t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 246 -QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF----TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH----HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 345556666667777777888888888887754332211 1111111111110 00 0000 000000111
Q ss_pred hhhhhhh-------------------hhhHhhHh---hhhHHHHHHHHHHHHHHh-cCCC-----CHHHHHHHHHHHHHH
Q 045024 304 FDVETFS-------------------ASIVSWKT---TCLMAAISSKSSYQRALY-LAPW-----QANIYTDIAITSDLI 355 (1173)
Q Consensus 304 ~~~~~~~-------------------~~~~~~~~---~~~~~~~~A~~~~~~al~-l~p~-----~~~~~~~la~~~~~~ 355 (1173)
.....+. ..+..|.. ...++..+-+..|.+++. .+|. -...|...|..|...
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 1111110 01111111 112345667778888774 4554 235789999999999
Q ss_pred hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC----HHHHHHHHHhhc---ccHHHHHHHHHHHhcCC-------------
Q 045024 356 YSLNEAYGHYQSAWHVSEKMALGALLLEGDN----CQFWVTLGCLSN---YNGLKQHALIRGLQLDV------------- 415 (1173)
Q Consensus 356 g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~----~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p------------- 415 (1173)
|+.+.|. ..+.++++..=.. ...|..-|.... +.+.|....+++.....
T Consensus 401 ~~l~~aR-----------vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 401 GDLDDAR-----------VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred CcHHHHH-----------HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 9888884 3445555543222 455655554444 33344455555543211
Q ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch---H
Q 045024 416 -----SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA---E 487 (1173)
Q Consensus 416 -----~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~---~ 487 (1173)
++..+|..++++....|-++.-...|++.+.+.--.|....+ -+..+....-++++.+.|++.+.+.+-| +
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 145689999999999999999999999999997777777777 4557777888999999999999997744 3
Q ss_pred HHH-HHHHHHHHhCCCChHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCch
Q 045024 488 FQI-GLAKLAKLSGHLSSSQVFGAIQQAIQRGPH-Y-PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHF 564 (1173)
Q Consensus 488 ~~~-~la~l~~~~g~~~~~~A~~~l~~al~~~P~-~-~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~ 564 (1173)
.+. -+..+-.+-|....+.|...|+++++..|. + -..+...+.+-+.-|--..|+.+|++|...... .
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~-------a-- 619 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE-------A-- 619 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH-------H--
Confidence 332 345555667777788999999999999885 2 235567788888999999999999998432211 1
Q ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhh
Q 045024 565 QDISINLARSLSRA----GNALDAVRECESLERQGMLDA--EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAA 638 (1173)
Q Consensus 565 ~~~~~~La~~~~~~----g~~~eAi~~~~~~~~~~p~~~--~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~ 638 (1173)
-.+.+=++|.+. =-...-...|+++++.-|++. ..-+..+..-.+.|..+.|...|.-.-+..+.... +
T Consensus 620 --~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~---~ 694 (835)
T KOG2047|consen 620 --QRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT---T 694 (835)
T ss_pred --HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC---h
Confidence 122222333221 113345567888887766653 34567789999999999999999988776552221 1
Q ss_pred hhHHHHHHHHHHhcChhhhhH
Q 045024 639 ASVSFICRLLYHISGLDSTIN 659 (1173)
Q Consensus 639 ~~~~~la~l~~~~g~~~~A~~ 659 (1173)
+-.-..-..-.+.|+.+.-++
T Consensus 695 ~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHH
Confidence 222222233445566554443
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.1e-16 Score=160.86 Aligned_cols=238 Identities=16% Similarity=0.132 Sum_probs=216.4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
-..+|.+|+..|- +.+|.+.|+.+++..|- ++.+..++.+|.+ ..+...|+..|.+.++..|.+...+..+++++..
T Consensus 226 k~Q~gkCylrLgm-~r~AekqlqssL~q~~~-~dTfllLskvY~r-idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGM-PRRAEKQLQSSLTQFPH-PDTFLLLSKVYQR-IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcC-hhhhHHHHHHHhhcCCc-hhHHHHHHHHHHH-hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3578999999997 99999999999987764 8899999999999 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
++++++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+.+..++++-++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 185 RAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 185 ~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+++....+ -.++|+++|.+....|++.-|...|+-++..++++.+++.+++..-.+.|+ .+.|..++..|
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-------i~~Arsll~~A 455 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-------ILGARSLLNAA 455 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-------hHHHHHHHHHh
Confidence 99987542 478999999999999999999999999999999999999999888777666 66666666666
Q ss_pred HHHHHHHhhhc
Q 045024 262 CKVAEANTRLA 272 (1173)
Q Consensus 262 l~~~~~~~~~~ 272 (1173)
....+.+.+..
T Consensus 456 ~s~~P~m~E~~ 466 (478)
T KOG1129|consen 456 KSVMPDMAEVT 466 (478)
T ss_pred hhhCccccccc
Confidence 66555544433
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=1.8e-14 Score=145.78 Aligned_cols=186 Identities=20% Similarity=0.161 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..+...+|.-|+. .|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..+
T Consensus 35 a~arlqLal~YL~-~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQ-QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 4678899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
+.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|...|+++++.+|+++.+...++..++..|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999974 45678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++++.....+-..........+-...|+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 99999988777666655544444444444
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.4e-15 Score=171.78 Aligned_cols=220 Identities=20% Similarity=0.235 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+-.|+.+++.+|++.++|..||.+..+.++ =..|+..++++++++|++.+++..||..|.. .|.-.+|..++.+-
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytN-eg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTN-EGLQNQALKMLDKW 379 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 346889999999999999999999999998887 4899999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 85 VSLSPDDSVSGEA-------LCELLEHGGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 85 l~~~p~~~~a~~~-------La~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|++|+.+|+.++..
T Consensus 380 i~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 380 IRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV 459 (579)
T ss_pred HHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc
Confidence 9887764332110 00000111123455667777777788 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
+|+|...|..||-.+..-.+.++|+..|++|+++.|..+.+++++|..++.+|.|++|+++|-.++.+.+.
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.2e-13 Score=145.25 Aligned_cols=224 Identities=15% Similarity=0.128 Sum_probs=185.8
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCCHHH
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-----AVAFRYLGHYYTRFSIDTQR 76 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~g~~~e 76 (1173)
+..++|++.|..+++.+|+..++++.+|..+...|. .+.|+..-+..+ ..|+. ..+.+.+|.-|+. .|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~-aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMA-AGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-HHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHH-hhhhhH
Confidence 345667999999999999999999999998888887 889988766555 34543 3577888999999 999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~ 151 (1173)
|...|....+...--..+...|..+|....+|++|++..++..+..+.. ...+..++..+....+.+.|+..+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988877655566778888899999999999999999888887764 44566778888888889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 152 AIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 152 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+++.+|+++.+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|..+|+.++....+.++.+..+...
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 999999999999999999999999999999999999988885 56777888899999999999999999888776643
No 74
>PLN02789 farnesyltranstransferase
Probab=99.65 E-value=4.3e-14 Score=158.72 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
..++-.+-.++...+. +++|+..+.++++++|++..+|..+|.++.. .| ++++++..++++++.+|++..+|...+.
T Consensus 37 ~~a~~~~ra~l~~~e~-serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDER-SPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 3444333334444444 8999999999999999999999999999999 88 6899999999999999999999999999
Q ss_pred HHHHCCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CC
Q 045024 101 LLEHGGKE--SLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GM 175 (1173)
Q Consensus 101 ~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~ 175 (1173)
++...|+. ++++..++++++.+|++..+|..++.++...|+++++++.++++++.+|.+..+|..++.+.... |.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 99988874 78899999999999999999999999999999999999999999999999999999999998776 33
Q ss_pred H----HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 176 F----SAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 176 ~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.++.+...++.++...
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3 578888899999999999999999999988 45677899999999999999998888888888753
No 75
>PLN02789 farnesyltranstransferase
Probab=99.65 E-value=2.8e-14 Score=160.24 Aligned_cols=203 Identities=14% Similarity=0.078 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH--HHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT--QRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~--~eA~~~~ 81 (1173)
...|+..+.++++.+|++..+|..+|.++...+.++++++..++++++.+|++..+|..++.++.. .|+. ++++.++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHHHH
Confidence 345799999999999999999999999999988558999999999999999999999999999999 8874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---KKW----SEAVQSLQHAIR 154 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~----~~A~~~l~~al~ 154 (1173)
+++++.+|++..+|...+.++...|+++++++.+.++++.+|++..+|..++.+.... |.+ ++++.+..+++.
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776 333 578888899999
Q ss_pred hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 155 GYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 155 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
.+|++..+|..++.++.. .++..+|++.+.+++...|.++.++..++.+|...
T Consensus 212 ~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 212 ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 999999999999999988 45677899999999999999999999999999863
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=6.2e-15 Score=154.30 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|.+.|+..++..| .++.+..+..+|....+ +..|+..|.+.++..|.+...+..+++++.. ++++++|.++|+.++
T Consensus 241 ~AekqlqssL~q~~-~~dTfllLskvY~ridQ-P~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 241 RAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ-PERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQLYKLVL 317 (478)
T ss_pred hhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc-HHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHHHHHHHH
Confidence 45888999998776 57888999999998887 9999999999999999999999999999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP---TSPHL 162 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~ 162 (1173)
+.+|.+.++.-.+|.-|+..++++-|+.+|+++++..-.+++.+.++|.+.+..++++-++..|++++.... .-.++
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998643 34789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
|+++|.+....||+.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..++++
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999998776665554
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.4e-11 Score=136.39 Aligned_cols=101 Identities=18% Similarity=0.098 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-CCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-SGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~ 599 (1173)
.|.+-..+-.++.+.++.+.|...+.+|+.-.... +. .......+...+..-.+.|+-++|...++++++.+|.+.
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~---s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG---SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc---chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 44444556667788888888888888887655443 22 234455677788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 600 EVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 600 ~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
+++..+..+|... +.+.|..+-+.+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9998888887765 456665555443
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=8.5e-13 Score=139.08 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=187.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-----VSGEALCE 100 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-----~a~~~La~ 100 (1173)
|..|.-++-.++ .++|+..|..+++.+|...++...+|..|.. .|..+.|+...+..++ .|+.. .+...||.
T Consensus 39 Yv~GlNfLLs~Q-~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRs-RGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQ-PDKAVDLFLEMLQEDPETFEAHLTLGNLFRS-RGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcC-cchHHHHHHHHHhcCchhhHHHHHHHHHHHh-cchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 455666655555 7999999999999999999999999999999 9999999999887765 45543 35889999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCC
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGM 175 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~ 175 (1173)
-|+..|-++.|...|....+...--..+...+..+|....+|++|+..-++..++.+.. +..+..++..+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999887655567899999999999999999999999999988855 4567788999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLAK 243 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~~ 243 (1173)
.+.|+..+.++++.+|+.+.+-..+|.++...|+|++|++.++.+++.+|+.. .+...+..+|..+|+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999863 345556666666665
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=9.1e-12 Score=131.97 Aligned_cols=446 Identities=13% Similarity=0.038 Sum_probs=277.4
Q ss_pred cHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 045024 38 SKEKAAEHFVIAAKLNPQNA-VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCR 116 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~ 116 (1173)
+|+.|+..++-....+.+.. ..-..+|.+++. .|+|++|...|.-+.+.+..+.+.+..++.+++..|.|.+|.....
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 49999999888775554433 566779999999 9999999999999998777778889999999999999999988776
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 117 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++ |+++-....+-.+..+.|+-++-...-+. +. +..+-...++.+.+..-.|.+|++.|.+++.-+|+....
T Consensus 116 ka----~k~pL~~RLlfhlahklndEk~~~~fh~~-Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al 187 (557)
T KOG3785|consen 116 KA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL 187 (557)
T ss_pred hC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH-Hh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence 54 66666555566666677776555444333 32 223556778888888889999999999999999998888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMS 276 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~ 276 (1173)
...++.+|.++.-|+-+.+.+.-.+...|+++.+....+..+.++-. |+..+ ++-.++........+
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n-----gr~ae-----~E~k~ladN~~~~~~--- 254 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN-----GRTAE-----DEKKELADNIDQEYP--- 254 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc-----cchhH-----HHHHHHHhcccccch---
Confidence 89999999999999999999999999999999887766666555322 11100 000000000000000
Q ss_pred HHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 045024 277 CIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY 356 (1173)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g 356 (1173)
|...+......-+..-+.|++.+-..++. -|++..+++..|..++
T Consensus 255 --------------------------------f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 255 --------------------------------FIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQN 299 (557)
T ss_pred --------------------------------hHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccc
Confidence 00000000000000112344333333333 2345555555555555
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL 436 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~ 436 (1173)
+..+|.. -.-+++|..|.-+...|.+....|+--.
T Consensus 300 dVqeA~~---------------------------------------------L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 300 DVQEAIS---------------------------------------------LCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred cHHHHHH---------------------------------------------HHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 5555522 2223455555555555666555555433
Q ss_pred HHHHHHHHHhh---------CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHH
Q 045024 437 ARQAFDSARSI---------DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQV 507 (1173)
Q Consensus 437 A~~~f~~al~~---------~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A 507 (1173)
..+..+-|.+. .-+.......+ +..+.-..+++ +.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsm-As~fFL~~qFd-----------------------------------dV 378 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSM-ASYFFLSFQFD-----------------------------------DV 378 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHH-HHHHHHHHHHH-----------------------------------HH
Confidence 33333322211 00111111111 11121222222 33
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 045024 508 FGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRE 587 (1173)
Q Consensus 508 ~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~ 587 (1173)
+..++..-....++....++++..+...|++.+|.+.|-++- .|+ ......-...||++|...|+++-|-..
T Consensus 379 l~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is-----~~~---ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-----GPE---IKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-----Chh---hhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 333333333345666777899999999999999999998661 111 111112344689999999999999877
Q ss_pred HHHHHHcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 588 CESLERQGMLD-AEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 588 ~~~~~~~~p~~-~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+-+. ..|.+ ...+..++..+++.+++==|.+.|..+-..+|.
T Consensus 451 ~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 451 MLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7554 23333 345567888999999998888888877666663
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=2.5e-09 Score=122.04 Aligned_cols=545 Identities=12% Similarity=0.077 Sum_probs=338.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHH
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG--------GKESLEVVVCRE 117 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~--------g~~~~A~~~~~~ 117 (1173)
|+.-+..+|.+...|......... .-..+-.-.|+++++.-|.+...|+..-..-..+ ..|..--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~--sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG--SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc--CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 555666788888888776554333 2234455689999999999998877765333221 235666677888
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++..-.+-+..|.........+|+...-...|.+++..-| .+...|-.........|-.+-++..|++.++.+|...
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~- 172 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR- 172 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH-
Confidence 8776667778899999999999999999999999999888 3445666666667778888999999999999998763
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 196 PLLESGNIFLMLGNFRKGVEQFQLALKIS-------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 196 a~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
......+...++.++|.+.|...+..+ +.+...|..+.....+.-+.-... ++ + .+++..
T Consensus 173 --eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl-nv-------d---aiiR~g 239 (835)
T KOG2047|consen 173 --EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL-NV-------D---AIIRGG 239 (835)
T ss_pred --HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc-CH-------H---HHHHhh
Confidence 455667888999999999999887543 334445544444443332210000 00 0 111111
Q ss_pred hh-hcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC---CHHH
Q 045024 269 TR-LAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW---QANI 344 (1173)
Q Consensus 269 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~ 344 (1173)
.. .....+.+|..+++.+...+ .++.|...|++++..--. ...+
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g--------------------------------~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSG--------------------------------LFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHHHHHHHHHhheehhhHHHH
Confidence 11 12234455666666554443 356677777777654322 1111
Q ss_pred HHHH-----HHHHHHHhh-HHH-hhhhhhhhhHHHHHHH------------HHHHhhcCCCHHHHHHHHHhhc-ccHHHH
Q 045024 345 YTDI-----AITSDLIYS-LNE-AYGHYQSAWHVSEKMA------------LGALLLEGDNCQFWVTLGCLSN-YNGLKQ 404 (1173)
Q Consensus 345 ~~~l-----a~~~~~~g~-~~e-A~~~~~~~~~~A~k~~------------~~al~~~p~~~~~~~~Lg~~~~-~~~~a~ 404 (1173)
+... ..+-.+++- -++ +.......++.....+ .-.+..+|.+..-|...-.++. +..+..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i 367 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHH
Confidence 1111 111111220 000 0000001111111111 1456678888888887776666 466667
Q ss_pred HHHHHHH-hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hhHHHHhHHHHHHhcCCHHHHHH
Q 045024 405 HALIRGL-QLDVSL-----ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL----ALPWAGMSADVQASESLVDDAFE 474 (1173)
Q Consensus 405 ~a~~kal-~l~p~~-----~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~----~~a~~~l~a~~~~~~g~~~eA~~ 474 (1173)
..|..|+ ..+|.. ...|..+|.+|...|+.+.|...|+++.+.+-.. ...|.. -+..-.+..+++.|+.
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~-waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA-WAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH-HHHHHHhhhhHHHHHH
Confidence 7788877 345542 3678999999999999999999999998874322 457777 4567778888999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Q 045024 475 SCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISS 554 (1173)
Q Consensus 475 ~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~ 554 (1173)
+.+++......+. + ....+.. +.++. --.+...|...+++.+..|-++.-...|++++++--.
T Consensus 447 lm~~A~~vP~~~~----~---~~yd~~~-pvQ~r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 447 LMRRATHVPTNPE----L---EYYDNSE-PVQAR---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHhhhcCCCchh----h---hhhcCCC-cHHHH---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 8888876633222 0 0001110 11111 0134567778888888888888888888888766222
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHH---HHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 555 SSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML--DAEVLQV---YAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 555 ~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~--~~~~~~~---la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
. .++-.|.|..+..+.-++++-+.|++-+...+- -.+.|.. ....-+..-..+.|...|+++|+..
T Consensus 510 T---------Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C 580 (835)
T KOG2047|consen 510 T---------PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC 580 (835)
T ss_pred C---------HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 2 236677788888888888888888887665433 2344422 2233333446688888888888877
Q ss_pred cccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCc
Q 045024 630 SAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGL 668 (1173)
Q Consensus 630 p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~ 668 (1173)
| ......++.+.|.+-...|....|..++++....+
T Consensus 581 p---p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 581 P---PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred C---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 6 22333456666677666777677776666644443
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-13 Score=148.67 Aligned_cols=251 Identities=18% Similarity=0.124 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
+.|+..+..+++..|+++..|...+..+...++ |++|....++.++++|.....+...++++.. .++..+|...++..
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~-~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a-~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGR-FEEALGDARQSVRLKDGFSKGQLREGQCHLA-LSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHh-HhhcccchhhheecCCCccccccchhhhhhh-hHHHHHHHHHhhhh
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99888888666522
Q ss_pred H------------hhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 85 V------------SLS------PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 85 l------------~~~------p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
- .+- |....+...-+.++...|++++|...--.++++++.+..+++..|.+++..++.+.|+
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~ 223 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAI 223 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHH
Confidence 1 011 2223456677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCh
Q 045024 147 QSLQHAIRGYPTSP------------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 147 ~~l~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~ 210 (1173)
..|+++++++|+.. ..+-.-|+-.++.|++..|.+.|..+|.++|++ ...+.+++.+..++|+.
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 99999999999763 346677899999999999999999999999985 45678899999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
.+|+...+.+++++|....++...|.+++.+++ ++.|.+.++++++.
T Consensus 304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~-------~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKALLRRANCHLALEK-------WEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 999999999999999988888888888877777 55555555555543
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.6e-13 Score=145.28 Aligned_cols=270 Identities=16% Similarity=0.073 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
.-....|..++.... |.+|+..+..|++..|+++..|...+..++. .|++++|....++.++++|..+......+.++
T Consensus 50 e~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~-~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDNASYYSNRAATLMM-LGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHhhcchHHHHhh-HHHHHHHHHHHHHhCccchhhhchhHHHHHH-HHhHhhcccchhhheecCCCccccccchhhhh
Confidence 445667788888887 9999999999999999999999999999999 99999999999999999999999888888888
Q ss_pred HHCCCHHHHHHHHHHHH------------hhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 103 EHGGKESLEVVVCREAS------------DKS------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al------------~~~------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...++..+|.+.++..- .+. |.-..+-..-+.++...|++++|...--..+++++.+.++++
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~ 207 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY 207 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence 88888777776554221 111 222345566788999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH---
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSI------------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS--- 229 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 229 (1173)
..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.+.|..++.++|++..
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 999999999999999999999999999853 34556788899999999999999999999999754
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhh
Q 045024 230 -AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVET 308 (1173)
Q Consensus 230 -a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (1173)
.+.+++.+...+|+ ..+|+ .-......+++.....+...+..+..+.+
T Consensus 288 klY~nra~v~~rLgr-------l~eai-------sdc~~Al~iD~syikall~ra~c~l~le~----------------- 336 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGR-------LREAI-------SDCNEALKIDSSYIKALLRRANCHLALEK----------------- 336 (486)
T ss_pred HHHHHhHhhhcccCC-------chhhh-------hhhhhhhhcCHHHHHHHHHHHHHHHHHHH-----------------
Confidence 34444445555444 43333 33333333444444445555555544333
Q ss_pred hhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 309 FSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++|++.|+++++...+
T Consensus 337 ---------------~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 337 ---------------WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ---------------HHHHHHHHHHHHhhccc
Confidence 56788888888877655
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.2e-10 Score=130.02 Aligned_cols=455 Identities=13% Similarity=0.013 Sum_probs=256.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 3 ~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
.+.+|+....+++...|++..+....-.++.+.+. |++|+...+.-...... ....+..+.|.++ .+..++|+..++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~k-y~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr-lnk~Dealk~~~ 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDK-YEDALKLIKKNGALLVI-NSFFFEKAYCEYR-LNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhH-HHHHHHHHHhcchhhhc-chhhHHHHHHHHH-cccHHHHHHHHh
Confidence 34445778888888888888888777777777776 88887444432211111 1222677888888 888888888877
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-SPH 161 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~ 161 (1173)
..++.+.......|.+++++|+|++|..+|+...+.+.++.+.-........... ..+ . ..+.+...|. +.+
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYE 176 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHH
Confidence 4456666677778888888888888888888887776665544333222211100 001 1 2233333443 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD--------DT-------SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.+++.+.++...|+|.+|++.+++++.+. .+ -......++.++..+|+.++|...|...++.+|.
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999995431 11 1235678899999999999999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhh
Q 045024 227 NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDV 306 (1173)
Q Consensus 227 ~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 306 (1173)
+....-....-+..+... ..-++. .++.......... ...+.. ....
T Consensus 257 D~~~~Av~~NNLva~~~d---~~~~d~------~~l~~k~~~~~~l---~~~~l~----~Ls~----------------- 303 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKD---QNYFDG------DLLKSKKSQVFKL---AEFLLS----KLSK----------------- 303 (652)
T ss_pred CchHHHHHhcchhhhccc---cccCch------HHHHHHHHHHHHh---HHHHHH----HHHH-----------------
Confidence 764432222211111110 000000 0000000000000 000000 0000
Q ss_pred hhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC
Q 045024 307 ETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN 386 (1173)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~ 386 (1173)
.-...+......-..-........+....+.+..|...+..-.. ++
T Consensus 304 -~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~--------~~------------------------- 349 (652)
T KOG2376|consen 304 -KQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQ--------EA------------------------- 349 (652)
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHH--------HH-------------------------
Confidence 00000000000000001112222222223323222221111000 00
Q ss_pred HHHHHHHHHhhc-ccHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCChhHHH
Q 045024 387 CQFWVTLGCLSN-YNGLKQHALIRGLQLDVSL-ADAWAHIGKLYGEVGEKKLARQAFD--------SARSIDPSLALPWA 456 (1173)
Q Consensus 387 ~~~~~~Lg~~~~-~~~~a~~a~~kal~l~p~~-~~a~~~Lg~~y~~~g~~e~A~~~f~--------~al~~~P~~~~a~~ 456 (1173)
-.+.. ....+.+.+....+..|.+ ..+...++.+....|+++.|++.+. ...+. .+.....
T Consensus 350 -------t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~--~~~P~~V 420 (652)
T KOG2376|consen 350 -------TKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA--KHLPGTV 420 (652)
T ss_pred -------HHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh--ccChhHH
Confidence 00000 1123334455555556665 6788889999999999999999999 33332 2223333
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhc-------CC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQI-------LP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLY 528 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~-------~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~l 528 (1173)
+.+...+.+.++.+.|.+.+..++.- .+ ........+.+..+.|+ ..+|...++++++.+|++..++..+
T Consensus 421 ~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~--~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 421 GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN--EEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc--hHHHHHHHHHHHHhCCchHHHHHHH
Confidence 43444666778777777777777763 11 11233344666666666 5689999999999999999999888
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 045024 529 GLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~ 546 (1173)
...|.+. +.+.|+.+=+
T Consensus 499 V~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhc-CHHHHHHHhh
Confidence 8777763 4566655433
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.54 E-value=7.1e-12 Score=146.24 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=175.5
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~ 93 (1173)
.+|+.+.++..+|..+...++ ++++...+.++.+..|.+ .+..+..|..+.. .|++++|...++++++.+|++..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGE-RPAAAAKAAAAAQALAARATERERAHVEALSAWI-AGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHH
Confidence 389999999999999988876 899899999988777754 5677888999999 99999999999999999999997
Q ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045024 94 SGEALCELLEHG----GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 94 a~~~La~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 169 (1173)
++.. +..+... +....+...+.......|........+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 7664 4444444 4445555555444456677788888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDTSI----FPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
+...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..|++++...|
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999877432 3466899999999999999999999987666
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=8.1e-13 Score=154.38 Aligned_cols=244 Identities=19% Similarity=0.221 Sum_probs=194.7
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
.+|....+...+|..|..+|+ |+.|+..++.+++. .|.-......+|.+|.. .+++++|+..|++|+.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~-~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGR-LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CCchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 466667777889999999998 99999999999987 55555666679999999 999999999999999752
Q ss_pred -----CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 89 -----PDDS---VSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 89 -----p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++++ .++..||.+|...|++++|..++++++++. |+-...+..++.++...+++++|+.+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4444 459999999999999999999999997763 233566788999999999999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 153 IRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--------DTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 153 l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
+++. |.-+..+.++|.+|...|++++|.+.|++++.+. +.....+..+|..|.+.+++.+|...
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 8753 2335678999999999999999999999999874 22356778999999999999999999
Q ss_pred HHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 217 FQLALKIS----SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 217 ~~~al~~~----p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
|.++..+. |+++.. -..|..++..+..+|+++.|.++.+.++..-.
T Consensus 432 ~~~~~~i~~~~g~~~~~~----~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDV----TYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99988753 444322 22444455555556668777777666665433
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=7.1e-11 Score=125.34 Aligned_cols=402 Identities=14% Similarity=0.037 Sum_probs=261.7
Q ss_pred ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHH
Q 045024 2 DEKGALLLQLEDSLEANPDD-PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~-~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~ 80 (1173)
|+.|+ +..++-.+..+.+. .+.-..+|.+++..|+ |++|...|.-+.+.+.-+.+.+..++-+++- .|.|.+|...
T Consensus 37 DytGA-islLefk~~~~~EEE~~~~lWia~C~fhLgd-Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~ 113 (557)
T KOG3785|consen 37 DYTGA-ISLLEFKLNLDREEEDSLQLWIAHCYFHLGD-YEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI 113 (557)
T ss_pred cchhH-HHHHHHhhccchhhhHHHHHHHHHHHHhhcc-HHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence 56777 88777777655443 3566778999999998 9999999999988777778999999999999 9999999877
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
-.+ .|+++--...+-.+..+.|+-++-...-+. +.. ..+-...++.+.+..-.|++|+.+|++++..+|+..
T Consensus 114 ~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 114 AEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred Hhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHH-Hhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 665 477776666666666777776554443333 322 224456788888888899999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-SENVSAHYGLASGLL 239 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~ 239 (1173)
..-..++.+|.++.-++-+.+.+.-.++..|+++.+....+-..+++=+-..|........... ...+... -+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~-----~l~ 260 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE-----YLC 260 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH-----HHH
Confidence 8999999999999999999999999999999999999888888777644444444444433321 1112111 111
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh----hcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 240 GLAKQCINLGAFRWGASLLEDACKVAEANTR----LAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 240 ~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
+..-. -|.. -+-|++.++.... ..-++...+...+++
T Consensus 261 rHNLV-----vFrn----gEgALqVLP~L~~~IPEARlNL~iYyL~q~dV------------------------------ 301 (557)
T KOG3785|consen 261 RHNLV-----VFRN----GEGALQVLPSLMKHIPEARLNLIIYYLNQNDV------------------------------ 301 (557)
T ss_pred HcCeE-----EEeC----CccHHHhchHHHhhChHhhhhheeeecccccH------------------------------
Confidence 11000 0000 0223333333222 222222222223332
Q ss_pred hHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC------HHH
Q 045024 316 WKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN------CQF 389 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~------~~~ 389 (1173)
++|+...+ +++|..|.-+...|.+....|+--..... ++.|...++ +-..+ ...
T Consensus 302 ---------qeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreH----lKiAqqffq----lVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 302 ---------QEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREH----LKIAQQFFQ----LVGESALECDTIPG 361 (557)
T ss_pred ---------HHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHH----HHHHHHHHH----Hhcccccccccccc
Confidence 34444333 57888888888888888888876544332 222222222 11111 001
Q ss_pred HHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhc
Q 045024 390 WVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASE 466 (1173)
Q Consensus 390 ~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~ 466 (1173)
...++...+ +.+.....+...-..-.++....+++++++...|++.+|.+.|-+....+-.+...+..+++.+|.+.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc
Confidence 111111111 12222222222223344566778899999999999999999998877666556667777789999999
Q ss_pred CCHHHHHHHHHH
Q 045024 467 SLVDDAFESCLR 478 (1173)
Q Consensus 467 g~~~eA~~~~~~ 478 (1173)
|+++-|.+++-+
T Consensus 442 kkP~lAW~~~lk 453 (557)
T KOG3785|consen 442 KKPQLAWDMMLK 453 (557)
T ss_pred CCchHHHHHHHh
Confidence 999988876643
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=2e-11 Score=142.40 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=163.2
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 129 (1173)
+|+++.++..+|.++.. .|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++..++
T Consensus 2 dp~~~~a~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLL-GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 79999999999999999 999999999999998887755 44577788899999999999999999999999998777
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKW----SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 130 ~~la~~~~~~g~~----~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
.. +..+...|++ ..+...+......+|........+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 65 5555555544 444444444335667778888899999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
..|++++|+..+++++...|.++... ...+..++..+...|++++|...++++
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~---~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLR---GHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchh---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999887543221 123333444444555566666555554
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.49 E-value=2.1e-12 Score=141.20 Aligned_cols=189 Identities=14% Similarity=0.019 Sum_probs=143.7
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH-
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV- 93 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~- 93 (1173)
++..+..++.+|..++..++ +++|+..|++++..+|+++ .+++.+|.++.. .|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGD-YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCch
Confidence 34467788888888888776 8888888888888888765 577888888888 88888888888888888887765
Q ss_pred --HHHHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 94 --SGEALCELLEHG--------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 94 --a~~~La~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
+++.+|.++... |++++|+..+++++..+|++..++..+..+.... .. .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHH
Confidence 577778887765 6778888888888888887755543322221110 00 01223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
..+|.+|...|++.+|+..++++++..|+. ..+++.+|.++..+|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 578889999999999999999999997764 57999999999999999999999888776655
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=3.1e-12 Score=139.82 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcc-------
Q 045024 5 GALLLQLEDSLEANPDDP---SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRFS------- 71 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~---~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~------- 71 (1173)
..|+..|+++++.+|+++ .+++.+|.+++..++ +++|+..|+++++.+|+++. +++.+|.++.. .
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~~~~~~~ 127 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QIDRVDRD 127 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hcccccCC
Confidence 446999999999999876 688999999999998 99999999999999998776 79999999998 6
Q ss_pred -CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 72 -IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 72 -g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
|++++|++.|+++++.+|++..+...+..+....+ . .......+|..++..|++.+|+..++
T Consensus 128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 88999999999999999999776544433221111 0 11234578889999999999999999
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 151 HAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 151 ~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
++++..|+. +.++..+|.++...|++++|+.+++......|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999997754 57999999999999999999999888776555
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=4.4e-12 Score=148.32 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK--- 121 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--- 121 (1173)
+|....+...+|..|.. .|+++.|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~-~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAV-QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45556777889999999 99999999999999988 4444444667999999999999999999999876
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 122 -----SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 122 -----~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 188 (1173)
+|.-..++.+||.+|...|++++|..++++++++. |.-...+..++.++...+++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34446789999999999999999999999998763 22345678889999999999999999999988
Q ss_pred hC-----CC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 189 LD-----DT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 189 ~~-----p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
+. ++ -...+.++|.+|..+|++++|.+.|++++.+...... ..+..+..+..++..+...+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 63 22 3567789999999999999999999999987533221 234556667777777777888999999999
Q ss_pred HHHHHHHHHhhhcCChHHHHHHhchHHHHHhh
Q 045024 260 DACKVAEANTRLAGNMSCIWKLHGDIQLTYAK 291 (1173)
Q Consensus 260 ~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 291 (1173)
++..+.+....-.++....+..++..+..+++
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 99999966667777877788877777766655
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=8.4e-10 Score=131.07 Aligned_cols=269 Identities=14% Similarity=0.099 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CCHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS-----IDTQRAIK 79 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-----g~~~eA~~ 79 (1173)
..|++.+++.-+.-++.....-.+|.++...|+ +++|...|...++.+|++...+..+..+... . .+.+.-..
T Consensus 21 ~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~-~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~-~~~~~~~~~~~~~~ 98 (517)
T PF12569_consen 21 EEALEHLEKNEKQILDKLAVLEKRAELLLKLGR-KEEAEKIYRELIDRNPDNYDYYRGLEEALGL-QLQLSDEDVEKLLE 98 (517)
T ss_pred HHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh-hcccccccHHHHHH
Confidence 345888888888888888888889999998887 8999999999999999998888888888743 3 24666778
Q ss_pred HHHHHHhhCCCCHHH------------HHHHHHHH----HHCC-------------CHHH---HHHHHHHHHhh------
Q 045024 80 CYQRAVSLSPDDSVS------------GEALCELL----EHGG-------------KESL---EVVVCREASDK------ 121 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a------------~~~La~~~----~~~g-------------~~~~---A~~~~~~al~~------ 121 (1173)
.|++.....|....+ ....+..| ...| +..+ ....+......
T Consensus 99 ~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~ 178 (517)
T PF12569_consen 99 LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS 178 (517)
T ss_pred HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC
Confidence 888887777754321 11111111 1111 1111 11112221110
Q ss_pred ----------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 122 ----------SPRA-FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 122 ----------~p~~-~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
.|.. .++++.++..|...|++++|+.++++++...|+.++.++..|.++-..|++.+|.+.++.+..++
T Consensus 179 ~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 179 FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred CCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1111 36778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS--ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 191 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
+.+-......+..+.+.|+.++|.+.+......+. .....-..-.......|+.+...|++..|+..|....+.+...
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999888765442 2211122233445667777788888999998888888888876
Q ss_pred hhhcCCh
Q 045024 269 TRLAGNM 275 (1173)
Q Consensus 269 ~~~~~~~ 275 (1173)
.+-.-++
T Consensus 339 ~~DQfDF 345 (517)
T PF12569_consen 339 EEDQFDF 345 (517)
T ss_pred hcccccH
Confidence 6544443
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=3.9e-12 Score=126.78 Aligned_cols=123 Identities=17% Similarity=0.088 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 9 LQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 9 ~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
..|+++++.+|++ ++.+|.++...|+ +++|+..|++++..+|.++.++..+|.++.. .|++++|+..|+++++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGD-YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence 4455555555543 3344555555544 5555555555555555555555555555555 555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
|+++.+++.+|.++...|++++|+..|+++++..|+++..+..+|.+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544444443
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=6.6e-12 Score=125.20 Aligned_cols=125 Identities=23% Similarity=0.266 Sum_probs=85.2
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566666666654 3455666677777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776666555555544
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=6.5e-09 Score=123.58 Aligned_cols=315 Identities=14% Similarity=0.032 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
.+.....+.++...|++++|++.++.....-.+........|.++..+|++++|...|+..++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34555566666677777777777766666666666666677777777777777777777777777777766666666653
Q ss_pred HcC-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 172 RLG-----MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK-GVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 172 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
... +.+.-...|++.....|....+. .+...+..-.++.. +..++...+.. .-|.....+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K-- 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK-- 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH--
Confidence 222 45555666666666666533221 11111111112222 22333333322 223333333333322111
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhh--hchhhhhhhhhhhhHhhHhhhhHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEER--QSLEFDVETFSASIVSWKTTCLMA 323 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 323 (1173)
. ..+.+.+..+......... ..... .......-.+.-..+..-+...|+
T Consensus 159 -----~----~~i~~l~~~~~~~l~~~~~--------------------~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 159 -----A----AIIESLVEEYVNSLESNGS--------------------FSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred -----H----HHHHHHHHHHHHhhcccCC--------------------CCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 0 0011111111110000000 00000 000000000000111111222333
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHH
Q 045024 324 AISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLK 403 (1173)
Q Consensus 324 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a 403 (1173)
+++|+...+++++.+|..++.+...|.++.+.|++.+|
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A------------------------------------------ 247 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA------------------------------------------ 247 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH------------------------------------------
Confidence 44555555555555555555555555555555555444
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC-----hhHHHHh-HHHHHHhcCCHHHHHHH
Q 045024 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDP--SL-----ALPWAGM-SADVQASESLVDDAFES 475 (1173)
Q Consensus 404 ~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P--~~-----~~a~~~l-~a~~~~~~g~~~eA~~~ 475 (1173)
.+.++.+-.+|+.|-.+....+..+++.|+.++|.+.+..-...+- .. .-.|+.. .|.+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567777788888888888889999999999999988887655442 11 1244432 47889999999999999
Q ss_pred HHHHHhc
Q 045024 476 CLRAVQI 482 (1173)
Q Consensus 476 ~~~al~~ 482 (1173)
|..+.++
T Consensus 328 ~~~v~k~ 334 (517)
T PF12569_consen 328 FHAVLKH 334 (517)
T ss_pred HHHHHHH
Confidence 9888776
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=5.7e-11 Score=124.96 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=119.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
+..|+. .|+++......++.. +|.. -+...++.++++..++++++.+|+++..|..+|.++...|+++
T Consensus 23 ~~~Y~~-~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLL-SPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHH-cchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667 788777654443221 2221 1112566788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAY-HRLGM--FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+|+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.++..+|..+...|++++|+..++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888888888888888864 66677 588888888888888888888888888888888888888888888
Q ss_pred HhhcCCCHHH
Q 045024 221 LKISSENVSA 230 (1173)
Q Consensus 221 l~~~p~~~~a 230 (1173)
++..|.+..-
T Consensus 171 L~l~~~~~~r 180 (198)
T PRK10370 171 LDLNSPRVNR 180 (198)
T ss_pred HhhCCCCccH
Confidence 8888776543
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.5e-09 Score=111.59 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=177.7
Q ss_pred cHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 045024 38 SKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A 111 (1173)
+.++-++++...+.. .|+.-..+-....+... .|+.+-|..++++.....|++..+....|..+...|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld-~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALD-TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 367777777766643 33334455556667777 89999999999999888899999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
+++|+..++.+|.+...+...--+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 192 TSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
.++.....+|.+++.+|. +.-|.++|.++++++|.+..+++++-.+-..+.
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 999999999999988874 567999999999999988888877655544443
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.32 E-value=1.1e-10 Score=121.28 Aligned_cols=180 Identities=18% Similarity=0.135 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
...+...+-+....+|++..+ ..++..+.. .|+-+.+..+..++...+|.+......+|......|++.+|+..++++
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~-~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYL-RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHh-cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 355666777777788988888 888888888 899999998888888888888888888899999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
....|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-.|+++.|...+..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888889
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+++.+....|++++|...-.+-
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999988776553
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=2.2e-10 Score=119.13 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+......+|...+..|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444455555666655 5666666666666666666666555556665555556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666665555555555556666
Q ss_pred HHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINL 248 (1173)
Q Consensus 237 ~~~~l~~~~~a~ 248 (1173)
+....|+..++.
T Consensus 211 ~~~~~g~~~~A~ 222 (257)
T COG5010 211 VVGLQGDFREAE 222 (257)
T ss_pred HHhhcCChHHHH
Confidence 665555544443
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.1e-08 Score=106.78 Aligned_cols=186 Identities=11% Similarity=0.094 Sum_probs=157.8
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
+..+ |++|++++..-.+.+|.+...+..+|.+|.. ..+|..|..+|++.-.+.|......+..+..+++.+.+..|+.
T Consensus 22 ~d~r-y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDAR-YADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhh-HHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4444 9999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+...+.....-.......-+-+.+..+++..+....++.- ..++.....+.|-+.++.|++++|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9877654311123445555667777888888877666531 12567888999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+..-++++.++++.|+++.|+++..++++.
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999988887764
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.28 E-value=2.4e-08 Score=109.43 Aligned_cols=298 Identities=14% Similarity=-0.005 Sum_probs=198.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~ 177 (1173)
|..-...|+|.+|.....+.-+..+.....+..-+...-+.||++.|-.++.++-+..+ +........+.+....|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 44445678888888888887777777777777777888888888888888888887733 33456677788888888888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
.|.....+++++.|.++.++.....+|...|++.+....+.+.-+..--+.+-... +..... .|-
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----le~~a~----~gl------- 235 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----LEQQAW----EGL------- 235 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----HHHHHH----HHH-------
Confidence 88888888888888888888888888888888888888877776643322211100 000000 000
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhc
Q 045024 258 LEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYL 337 (1173)
Q Consensus 258 l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 337 (1173)
++++.. .... ++=...++..-..
T Consensus 236 L~q~~~-------~~~~--------------------------------------------------~gL~~~W~~~pr~ 258 (400)
T COG3071 236 LQQARD-------DNGS--------------------------------------------------EGLKTWWKNQPRK 258 (400)
T ss_pred HHHHhc-------cccc--------------------------------------------------hHHHHHHHhccHH
Confidence 000000 0000 0000111111111
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc-ccHHHHHHHHHHHhcCCC
Q 045024 338 APWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN-YNGLKQHALIRGLQLDVS 416 (1173)
Q Consensus 338 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~-~~~~a~~a~~kal~l~p~ 416 (1173)
-..++.+...++.-+...|+.++|.. +...+++..-+.. ....++.+-. ++..-++..++.++..|+
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~-----------~i~~~Lk~~~D~~-L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQE-----------IIEDALKRQWDPR-LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHH-----------HHHHHHHhccChh-HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 22345566666666667777777633 3334444333322 2222333322 555667788999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
+|..+..||.++.+.+.|.+|..+|+.+++..|+.. .+. +++.++.+.|+..+|.+.+++++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~-~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYA-ELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHH-HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988753 333 3788999999999999999988754
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.27 E-value=3.2e-10 Score=139.81 Aligned_cols=206 Identities=10% Similarity=-0.008 Sum_probs=182.2
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS--- 92 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~--- 92 (1173)
..+|.+..++..+...+...++ +++|+...+.+++..|+...+++.+|.++.+ .+++.++... +++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhh--hhhhhcccccchh
Confidence 3578899999999999988887 9999999999999999999999999999999 9888877766 6666655555
Q ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 93 ----------------VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 93 ----------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
.+++.+|.+|.++|+.++|...|+++++.+|+++.+.+++|..|... +.++|+.++.+++..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 88999999999999999999999999999999999999999999999 999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH--------HHH------------HHHHHcCChHHHHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL--------ESG------------NIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la------------~~~~~~g~~~~A~~~ 216 (1173)
++..+++.++.+...+.+..+|++..... .++ ..|...+++++++..
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 67777899999999999999888765522 223 677888999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 217 FQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
++.+++.+|+|..+...++.+|..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 999999999999999999999974
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.1e-09 Score=112.48 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
-..+-....+....++ .+.|..++++.....|.+...-...|..+.. .|++++|+++|+..++-+|.+...+.....+
T Consensus 52 w~l~EqV~IAAld~~~-~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa-~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGR-DDLAQKCINQLRDRFPGSKRVGKLKAMLLEA-TGNYKEAIEYYESLLEDDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhchhhHHHHHHHHhccCcchhHHHHHHHHH
Confidence 3444445555666776 7999999999988889999999999999999 9999999999999999999999999988889
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSA 178 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~ 178 (1173)
...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++-+| ++.-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876 5667
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
|.++|.++++++|.+..+++.+-.+-
T Consensus 210 arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 99999999999998888877665543
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.27 E-value=1.5e-10 Score=121.84 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ-LHHKK--WSEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~A~~ 147 (1173)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++..|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
.++++++.+|+++.++..+|..+...|++++|+..++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887653
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=3e-08 Score=108.66 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL 407 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~ 407 (1173)
++..++.++..|+++.++..+|..+.+.+.+.+| .++|
T Consensus 314 ~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA------------------------------------------~~~l 351 (400)
T COG3071 314 IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA------------------------------------------SEAL 351 (400)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH------------------------------------------HHHH
Confidence 3445667777777777777777777777766655 5577
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 408 IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 408 ~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
+.+++..| +...+..+|.++.+.|+.++|.+.++.++..
T Consensus 352 eaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77887777 6778999999999999999999999999854
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.24 E-value=1.6e-09 Score=133.72 Aligned_cols=225 Identities=12% Similarity=0.019 Sum_probs=162.3
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH----
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF---- 126 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~---- 126 (1173)
..+|.+..++..++..+.. .|++++|+...+.+++.+|+....++.+|.++...+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~-~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKS-ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4578899999999999999 99999999999999999999999999999999999988777766 5555554443
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 127 ---------------WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 127 ---------------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
.+++.+|.+|-++|++++|...++++++.+|+++.++.++|..|... +.++|++++.+++..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 67777777777777777777777777777777777777777777777 777777777777664
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhh
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRL 271 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~ 271 (1173)
+...+++.++.+++.+.+..+|++......+-...... .| +..+...+...
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~------~~-~~~~~~~~~~l---------- 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGH------RE-FTRLVGLLEDL---------- 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhh------hc-cchhHHHHHHH----------
Confidence 55556777777777777777777665433222111110 00 11111111111
Q ss_pred cCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045024 272 AGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT 351 (1173)
Q Consensus 272 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 351 (1173)
...+....++++++..++.+++.+|.+..+...++.+
T Consensus 230 -------------------------------------------~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 230 -------------------------------------------YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred -------------------------------------------HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 1112223346689999999999999999999999999
Q ss_pred HH
Q 045024 352 SD 353 (1173)
Q Consensus 352 ~~ 353 (1173)
|.
T Consensus 267 y~ 268 (906)
T PRK14720 267 YK 268 (906)
T ss_pred HH
Confidence 87
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=4.9e-10 Score=137.88 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=118.6
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
....|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34467778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.+|.++.+.|++++|+..|++++..+|++..++..+|.++...|+.++|...|+++++...+-.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 8888888888888888888888887788888888888888888888888888888887765544
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.22 E-value=1.1e-09 Score=134.87 Aligned_cols=155 Identities=7% Similarity=-0.055 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD 120 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~ 120 (1173)
+++..........|.++++++.+|.+... .|.+++|...+++++++.|++..++..++.++.+.+++++|+..+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~-~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEA-AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33444444456788899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887655444
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=5.1e-08 Score=101.89 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=145.5
Q ss_pred HHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 68 TRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 68 ~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
.+ ..+|.+|++++..-.+.+|.+...+..+|.+|+...++..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus 21 I~-d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IR-DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HH-HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 56 78899999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+...+.....-.......-+.+.+..+++..+....++.- ..+......+.|-+.++.|++++|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8877654311123344445666777888888877766532 12467788899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 045024 228 VSAHYGLASGLLGLAK 243 (1173)
Q Consensus 228 ~~a~~~la~~~~~l~~ 243 (1173)
+..-++++.++.+.++
T Consensus 178 pllAYniALaHy~~~q 193 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQ 193 (459)
T ss_pred chhHHHHHHHHHhhhh
Confidence 8888899998888777
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=7.5e-08 Score=126.98 Aligned_cols=399 Identities=12% Similarity=-0.062 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD-KSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~ 137 (1173)
.+...+..+.. .|++.+|...+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus 343 lh~raa~~~~~-~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLA-QGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 33444555556 66666666544433110 00011233445555566666665555443310 11122334445566666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPT---------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-----IFPLLESGNI 203 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~ 203 (1173)
..|++++|...+..+....+. .......++.++...|++++|...++++++..+.. ..+...+|.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 677777777777666543211 12233445666667777777777777776643332 1234556666
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhc
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHG 283 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g 283 (1173)
+...|++++|...+++++........ ....+.++..++..+...|+++.|...+++++.........
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------ 567 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE------------ 567 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------
Confidence 66777777777777777655332211 11223344444555555666666666665555433221000
Q ss_pred hHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhh
Q 045024 284 DIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYG 363 (1173)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 363 (1173)
..+....++..++.++...|++++|..
T Consensus 568 -----------------------------------------------------~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 568 -----------------------------------------------------QLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred -----------------------------------------------------cccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 001011223345556666666666632
Q ss_pred hhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 364 HYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLD-VSLADAWAHIGKLYGEVGEKKLARQAFD 442 (1173)
Q Consensus 364 ~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~~e~A~~~f~ 442 (1173)
... +++... -... +....++..+|.++...|++++|...++
T Consensus 595 ~~~-----------~al~~~---------------------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 595 CAR-----------KGLEVL---------------------------SNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHH-----------HhHHhh---------------------------hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 111100 0001 1134556667888888888888888888
Q ss_pred HHHhhCCCCh--hHHHH----hHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 443 SARSIDPSLA--LPWAG----MSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQ 516 (1173)
Q Consensus 443 ~al~~~P~~~--~a~~~----l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~ 516 (1173)
++..+.+... ..+.. .....+...|+.+.|...+.......+...
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~----------------------------- 687 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN----------------------------- 687 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc-----------------------------
Confidence 8776533221 11110 011233346666666665544332110000
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045024 517 RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM 596 (1173)
Q Consensus 517 ~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p 596 (1173)
......+..+|.++...|++++|...+++++...+.... ......++..+|.++...|+.++|...+.++++...
T Consensus 688 --~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~---~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 688 --HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL---MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 001123456888899999999999999999776543321 223455777888889999999999999999887653
Q ss_pred C
Q 045024 597 L 597 (1173)
Q Consensus 597 ~ 597 (1173)
.
T Consensus 763 ~ 763 (903)
T PRK04841 763 R 763 (903)
T ss_pred c
Confidence 3
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=5e-10 Score=110.83 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 162 (1173)
+++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..
T Consensus 8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 87 (135)
T TIGR02552 8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP 87 (135)
T ss_pred HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
++.+|.++...|++++|+..|+++++.+|
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33333333333333333333333333333
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=6.2e-10 Score=110.12 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=113.5
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
+.+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999988754
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=1.7e-07 Score=123.60 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=240.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV-SLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al-~~~p~~~~a~~~La~~ 101 (1173)
..+...+..+...|. +.+|+.++..+-.. +.-.......+..... .|+++.+..++..+- .....++......+.+
T Consensus 342 ~lh~raa~~~~~~g~-~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~-~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 342 ELHRAAAEAWLAQGF-PSEAIHHALAAGDA-QLLRDILLQHGWSLFN-QGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHCCCH-HHHHHHHHHhHHHHHh-cCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 445555666666666 88888766654211 1112345556777777 898888777765531 1112334455677888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPR---------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALG 167 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la 167 (1173)
+...|++++|...+..+....+. .......++.++...|++++|...+++++...+.. ..+...+|
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 89999999999999988654221 13445567888899999999999999999865532 23557789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLG 240 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~ 240 (1173)
.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++........ .....+.++..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999999998764321 345677899999999999999999999876332110 00011122334
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhh
Q 045024 241 LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTC 320 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (1173)
++......|++++|...+.+++........ ......+...+.+.. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~--------------------------------~ 624 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAKISL--------------------------------A 624 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHHHHH--------------------------------H
Confidence 566666778899999888888876553211 111122222222222 2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCH---HHHHH----HHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 321 LMAAISSKSSYQRALYLAPWQA---NIYTD----IAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTL 393 (1173)
Q Consensus 321 ~~~~~~A~~~~~~al~l~p~~~---~~~~~----la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~L 393 (1173)
.|+.++|...+.++..+.+... ..... ....+...|+.+.+
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A-------------------------------- 672 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAA-------------------------------- 672 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHH--------------------------------
Confidence 3445677777777765433211 00000 01111222333332
Q ss_pred HHhhcccHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChhHHHHhHHHHH
Q 045024 394 GCLSNYNGLKQHALIRGLQLDVS----LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPS------LALPWAGMSADVQ 463 (1173)
Q Consensus 394 g~~~~~~~~a~~a~~kal~l~p~----~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~------~~~a~~~l~a~~~ 463 (1173)
.+.+.......+. ....+..+|.++...|++++|...+++++..... ...+... .+.++
T Consensus 673 ----------~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-la~a~ 741 (903)
T PRK04841 673 ----------ANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL-LNQLY 741 (903)
T ss_pred ----------HHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHH
Confidence 1111111111111 1123567899999999999999999999876322 1223444 57788
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 045024 464 ASESLVDDAFESCLRAVQILP 484 (1173)
Q Consensus 464 ~~~g~~~eA~~~~~~al~~~p 484 (1173)
...|+.++|...+.+++++..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhC
Confidence 899999999999999998754
No 113
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.11 E-value=1e-08 Score=111.21 Aligned_cols=313 Identities=14% Similarity=0.067 Sum_probs=186.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIW 279 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~ 279 (1173)
-|.-+++.|++...+..|+.+++...++. ..+..+|.++|+.+..+++|++|+++..--+.+.+.+.
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl---~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg---------- 89 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDL---STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG---------- 89 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHH---HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc----------
Confidence 36678899999999999999999876554 35677889999998889998888776544333322111
Q ss_pred HHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH
Q 045024 280 KLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLN 359 (1173)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~ 359 (1173)
+- -..+..--++|..+...|.|+
T Consensus 90 ----dk-----------------------------------------------------lGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 90 ----DK-----------------------------------------------------LGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred ----ch-----------------------------------------------------hccccccccccchhhhhcccc
Confidence 10 001112234555555666666
Q ss_pred HhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 360 EAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQ 439 (1173)
Q Consensus 360 eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~ 439 (1173)
+|.....+.+..++++=.+..+ ..+++++|.+|...|....+ .-.-+....+.++ ...++.|.+
T Consensus 113 eA~~cc~rhLd~areLgDrv~e-----~RAlYNlgnvYhakGk~~g~-~~pee~g~f~~ev----------~~al~~Av~ 176 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLE-----SRALYNLGNVYHAKGKCTGL-EAPEEKGAFNAEV----------TSALENAVK 176 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhh-----hHHHhhhhhhhhhcccccCC-CChhhcccccHHH----------HHHHHHHHH
Confidence 6655444434333332222221 23344444444322211000 0000000000110 012344555
Q ss_pred HHHHHHhhCCCChhHH-----HHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 440 AFDSARSIDPSLALPW-----AGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQA 514 (1173)
Q Consensus 440 ~f~~al~~~P~~~~a~-----~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~a 514 (1173)
+|..-+++.....+.. ++.++..|.-.|+++.|+..-+.-+.+.. +.=.++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~------------------------efGDrA 232 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ------------------------EFGDRA 232 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH------------------------HhhhHH
Confidence 5555554432221111 12256677778888888876554443311 000111
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 515 IQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 515 l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
....++.++|.++.-.|+++.|+++|++.+.+.-...+ ...-++..+.||+.|.-..++++||.++.+-+.+
T Consensus 233 -----aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 233 -----AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred -----HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12457889999999999999999999999877554433 2334678899999999999999999999886544
Q ss_pred --CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 595 --GMLD----AEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 595 --~p~~----~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
...| ..+...+|.+|-..|..++|+.+.+..+...-
T Consensus 305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2333 34668899999999999999999998877543
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=2.2e-09 Score=124.87 Aligned_cols=208 Identities=17% Similarity=0.114 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|........++..+...|= ...|+..|++ +..|-....+|.. .|+..+|.....+-++ .|.++..|..+
T Consensus 395 pp~Wq~q~~laell~slGi-tksAl~I~Er--------lemw~~vi~CY~~-lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGI-TKSALVIFER--------LEMWDPVILCYLL-LGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcch-HHHHHHHHHh--------HHHHHHHHHHHHH-hcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 4445666788999998887 8999999998 5677788899999 9999999999999888 67778888888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
|.+.....-|++|.++.+.. +..+...+|......++|+++...++..++++|-....|+.+|.+..+.+++..
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88887777677777776654 345677788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
|.+.|.+++.++|++..+|.+++..|.+.|+-.+|...+.++++.+-++...|.+.-.+....|.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 99999999999999999999999999999999999999999999998888888888777777776
No 115
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=2e-08 Score=112.91 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|....++|..+..++. .|++++|+..++..+...|+|+..+...+.++...++..+|.+.+++++..+|+.+..+..+
T Consensus 302 ~~~~~aa~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 302 KRGGLAAQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred CccchHHHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 37888899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
|..+++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|... .+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999988776654 4556777899999
Q ss_pred HHHHHHHHHhhcCCC
Q 045024 213 GVEQFQLALKISSEN 227 (1173)
Q Consensus 213 A~~~~~~al~~~p~~ 227 (1173)
|+..+.++.+...-+
T Consensus 444 A~~~l~~A~~~~~~~ 458 (484)
T COG4783 444 AIIFLMRASQQVKLG 458 (484)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999988876433
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=116.16 Aligned_cols=115 Identities=24% Similarity=0.350 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
+-+..-|.-+++.++|.+|+..|.++|.++|+++..|.+.+.+|.++|.++.|++.++.++.++|....+|.++|.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 207 LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 207 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+|++++|++.|+++++++|++......|..+-..+
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999987665555444443
No 117
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.06 E-value=2.7e-09 Score=115.60 Aligned_cols=276 Identities=14% Similarity=0.107 Sum_probs=149.2
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRA----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTSPHLWEALGLAYH 171 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~ 171 (1173)
+.+.|+....+..|+.+++...++ ..+|..+|.+|+.+++|++|+++...-+.+ .-..+...-++|.++-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 344444444444444444444333 223445555555556666665554332211 1122334456666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhhcC
Q 045024 172 RLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIFLMLGNF--------------------RKGVEQFQLALKISS 225 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~p 225 (1173)
-.|.|++|+.+..+-+..... ...+++++|.+|...|+. +.|.++|..-+++..
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777666665543221 345667777777766543 233334443333322
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhh
Q 045024 226 ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFD 305 (1173)
Q Consensus 226 ~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~ 305 (1173)
... -....|.++-.+|+.++-+|+|+.|+...+.-+.+.+..
T Consensus 187 ~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef------------------------------------- 228 (639)
T KOG1130|consen 187 KLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF------------------------------------- 228 (639)
T ss_pred Hhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-------------------------------------
Confidence 211 223445566666666666666666665444433322211
Q ss_pred hhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC
Q 045024 306 VETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD 385 (1173)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~ 385 (1173)
=.++- ...++.++|.++...|+++.|...+...+.+|+++=.+
T Consensus 229 -------------------------GDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r------- 271 (639)
T KOG1130|consen 229 -------------------------GDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR------- 271 (639)
T ss_pred -------------------------hhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-------
Confidence 01111 12356678888888888888866554433333221111
Q ss_pred CHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChhHHHHhH
Q 045024 386 NCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPS------LALPWAGMS 459 (1173)
Q Consensus 386 ~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~------~~~a~~~l~ 459 (1173)
.-.+..-+.||..|.-..++++|+.++.+-+.+..+ ...+... +
T Consensus 272 -----------------------------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS-L 321 (639)
T KOG1130|consen 272 -----------------------------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWS-L 321 (639)
T ss_pred -----------------------------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-H
Confidence 113445678999999999999999999887766321 2334444 5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 045024 460 ADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 460 a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
+.++...|..++|+.+.+..+++
T Consensus 322 gna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777788888887766655544
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=6e-09 Score=121.38 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
...|-....+|...|+ ..+|.....+-++ .|.++..|..+|.+... ..-|++|.++++.. +..+...+|..
T Consensus 424 lemw~~vi~CY~~lg~-~~kaeei~~q~le-k~~d~~lyc~LGDv~~d-~s~yEkawElsn~~------sarA~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQ-HGKAEEINRQELE-KDPDPRLYCLLGDVLHD-PSLYEKAWELSNYI------SARAQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcc-cchHHHHHHHHhc-CCCcchhHHHhhhhccC-hHHHHHHHHHhhhh------hHHHHHhhccc
Confidence 4567778888888886 6888888888887 77788999999988877 65566666655542 34567788888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIK 181 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 181 (1173)
....+++.++...++..++++|-....|+.+|.+..+.++++.|...|...+.++|++..+|.+++..|++.|+-.+|..
T Consensus 495 ~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 182 SYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 182 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
.+.++++-+-++...|.+...+....|.+++|++.|.+.+.+.
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999998899999999999999999999999999998764
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=3.8e-09 Score=112.02 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=92.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+-.-|.-+++.++|.+|+..|.++++++|+++..|.+.+.+|.++|.++.|++..+.++.++|....+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 55667777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
++++|++.|+++++++|++......|..+-.++++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888888888777777777766666665
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.00 E-value=1.4e-08 Score=99.41 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=84.4
Q ss_pred hhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 120 DKS-PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 120 ~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.+. ++.-+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|++++|+..|.+++.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 445 5566677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
+.|.++...|+.+.|.+.|+.++....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888888877653
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=7.8e-08 Score=108.27 Aligned_cols=139 Identities=17% Similarity=0.087 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++..+|+.+....++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 36777888999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.+|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|...+-+.......
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999998888777666555433
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.99 E-value=1.1e-08 Score=100.04 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
++..+..+.+|..+...|++++|...|+.+...+|.++..|+.+|.++..+|++++|+..|.+++.++|+++.++.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 045024 169 AYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 169 ~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
+++..|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666666654
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=2.5e-07 Score=100.57 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPRA---FWAF 129 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~ 129 (1173)
.+..++..|..+.. .|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++..|++ +.++
T Consensus 31 ~~~~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQ-DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34455555555555 566666666666666655555443 2555555666666666666666666555543 3445
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcC
Q 045024 130 RRLGYLQLHHK---------------K---WSEAVQSLQHAIRGYPTSP-----------------HLWEALGLAYHRLG 174 (1173)
Q Consensus 130 ~~la~~~~~~g---------------~---~~~A~~~l~~al~~~p~~~-----------------~~~~~la~~~~~~g 174 (1173)
+.+|.++...+ | ..+|+..|++.++..|+.. .--+..|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555433222 1 2345566666666666542 12345678888899
Q ss_pred CHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.+..|+.-++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999888774 578888888999999998887766543
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=0.0001 Score=87.02 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHccCcHHHHH------------HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 23 SLHLDLGLHLWENSESKEKAA------------EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~------------~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
.+|-+++.......+ .+-|. ..++++.+ +|+..+ ...+....+ .|..++|...|++.-+
T Consensus 758 ~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q-~~~e~e--akvAvLAie-LgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQ-NGEEDE--AKVAVLAIE-LGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHh-CCcchh--hHHHHHHHH-HhhHHHHHHHHHHHHH----
Confidence 456666655554443 43333 33444433 343322 244556667 8888888888888644
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC---
Q 045024 91 DSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA----------IRGYP--- 157 (1173)
Q Consensus 91 ~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~a----------l~~~p--- 157 (1173)
+-.|-.+|...|.+++|.++.+.--++.- ...+++.+..+...+|.+.|+++|+++ +.-+|
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 33556677788888888877654322221 345677777788888888888888764 23333
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCChHHHHHHHHHHHHcCC
Q 045024 158 -------TSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---------------------DDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 158 -------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~~a~~~la~~~~~~g~ 209 (1173)
.++..|..-|..+...|+.+.|+..|..+-.. ...+..+.+.+|+.|...|+
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH
Confidence 34556667788888888888888888876432 12344556666777777777
Q ss_pred hHHHHHHHHHH
Q 045024 210 FRKGVEQFQLA 220 (1173)
Q Consensus 210 ~~~A~~~~~~a 220 (1173)
+.+|+..|.++
T Consensus 983 v~~Av~FfTrA 993 (1416)
T KOG3617|consen 983 VVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHH
Confidence 77776666554
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=4.2e-08 Score=113.25 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+...|...+..|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888877766665554443
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.8e-08 Score=112.18 Aligned_cols=253 Identities=14% Similarity=0.083 Sum_probs=154.6
Q ss_pred cCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPD-DSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~-~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
.|+|..++..++ ....+|. .......+.+.+..+|+++..+..... ..+....+...++..+...++.+.++..+
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 688887776665 2222322 233466777778888887766554432 11222344455555554445666666666
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 150 QHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 150 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+..+.... .++......|.++...|++++|++.+.+. ++.+.......++..+++++.|.+.++.+.+.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~ 164 (290)
T PF04733_consen 90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS 164 (290)
T ss_dssp HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH
Confidence 65543322 34555666778888889999888887654 567777788889999999999999998887776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhh
Q 045024 228 VSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVE 307 (1173)
Q Consensus 228 ~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 307 (1173)
... .++..++.+.. |
T Consensus 165 ~l~--qLa~awv~l~~-----g---------------------------------------------------------- 179 (290)
T PF04733_consen 165 ILT--QLAEAWVNLAT-----G---------------------------------------------------------- 179 (290)
T ss_dssp HHH--HHHHHHHHHHH-----T----------------------------------------------------------
T ss_pred HHH--HHHHHHHHHHh-----C----------------------------------------------------------
Confidence 433 33333332211 0
Q ss_pred hhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCH
Q 045024 308 TFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNC 387 (1173)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~ 387 (1173)
...+.+|.-.|++..+..|.++.+++.++.++..+|++++|
T Consensus 180 -------------~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA-------------------------- 220 (290)
T PF04733_consen 180 -------------GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA-------------------------- 220 (290)
T ss_dssp -------------TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH--------------------------
T ss_pred -------------chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH--------------------------
Confidence 00123466667776666666777777788887777777777
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCh
Q 045024 388 QFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEK-KLARQAFDSARSIDPSLA 452 (1173)
Q Consensus 388 ~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~-e~A~~~f~~al~~~P~~~ 452 (1173)
++.+.+++..+|++++++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 221 ----------------e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 221 ----------------EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ----------------HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ----------------HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 2345556666777777777777777777777 556667777777777763
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=2.4e-07 Score=98.32 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
++..++..|..++..|+ |.+|+..|++++...|.. +.+.+.+|.++.. .|++++|+..|++.++..|+++. +
T Consensus 4 ~~~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD-YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 35566777777777766 777777777777666654 4566777777777 77777777777777777766543 4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP-------------- 160 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------------- 160 (1173)
++.+|.++.....-. + ......+...+|+..|+..++..|++.
T Consensus 82 ~Y~~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHHHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 555555554431110 0 001111222344444444444444431
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHH
Q 045024 161 ---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 161 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A 213 (1173)
.--+.+|..|.+.|.+..|+..++.+++..|+. ..++..++..|..+|..+.|
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 223446777777777777777777777777765 35666777777777777643
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=4.5e-07 Score=98.59 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVA---FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
++..++..|..++..|+ |++|+..|++++...|..+.+ .+.+|.++.+ .+++++|+..|++.++.+|+++. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~-y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGN-WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 67788999999999887 999999999999999998655 4899999999 99999999999999999998764 4
Q ss_pred HHHHHHHHHHCC---------------C---HHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHc
Q 045024 95 GEALCELLEHGG---------------K---ESLEVVVCREASDKSPRAFW-----------------AFRRLGYLQLHH 139 (1173)
Q Consensus 95 ~~~La~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~-----------------a~~~la~~~~~~ 139 (1173)
++.+|.++...+ | ..+|+..|++.++..|+... --+.+|..|.+.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788887654433 1 35788999999999997621 223568889999
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
|.|..|+.-++.+++..|+. .+++..++..|...|..++|.+.....
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999998864 678899999999999999998876553
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.84 E-value=5.3e-08 Score=112.46 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
|..++. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|+++
T Consensus 9 a~~a~~-~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFV-DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344444 4444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|+..|++++.++|+++.+...++
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444444444444444444443333
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.81 E-value=0.00079 Score=81.39 Aligned_cols=221 Identities=13% Similarity=0.099 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQR 83 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~ 83 (1173)
+.+|+....+.++..|+...+....|.++.+.|. .++|..+++..-...+++...+..+-.+|.. +|++++|..+|++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-GDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-chhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHHHH
Confidence 4457999999999999999999999999999998 9999988888777888888899999999999 9999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCC---------HHHHHHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HKK---------WSEAVQSLQHAI 153 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~---------~~~A~~~l~~al 153 (1173)
++..+|+ .+..+.+-..|.+-++|.+=.+.--+..+..|+++..+.....+.++ ... ..-|....++.+
T Consensus 103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 9999999 77777888888888887776666666666778876554444444433 222 233555566666
Q ss_pred HhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHH-HHHh-CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 154 RGY-PTSPH-LWEALGLAYHRLGMFSAAIKSYGR-AIEL-DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 154 ~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~-al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+.. +-... -....-.++..+|++++|...+.. ..+. .+.+...-......+...+++.+-.+...+++..++++
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 655 32211 122233566778999999999843 3333 34445555567788888999999999999999999887
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-07 Score=101.77 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 045024 74 TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK---KWSEAVQSLQ 150 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~l~ 150 (1173)
.++-+.-++.-+..+|+|.+.|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555556666666666666666666666666666666666666666666666666655432 3456666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++..+|++..+.+.+|..++..|+|.+|+..++..++..|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666666666666666666665554
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.77 E-value=5.1e-07 Score=95.84 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCC-----
Q 045024 5 GALLLQLEDSLEANPDD---PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSID----- 73 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~---~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~----- 73 (1173)
..|+..|++++...|.+ +.+.+.+|.+++..++ +++|+..|++.++..|+++ .+++.+|.++.. ...
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~-y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~-~~~~~~~~ 99 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD-YEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK-QIPGILRS 99 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH-HHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-hCccchhc
Confidence 44699999999998875 6789999999999987 9999999999999999864 689999999888 532
Q ss_pred ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 74 ------TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 74 ------~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
..+|+..|+..++..|++..+- +|...+..+-. .-..--+.+|..|.+.|.|..|+.
T Consensus 100 ~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 100 DRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp T---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHHHcccHHHHHH
Confidence 2478888888888888876542 11111111100 012233457888888888888888
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 045024 148 SLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 148 ~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 180 (1173)
.++.+++..|+.. +++..++..|.++|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888763 56778888888888887544
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=7.1e-08 Score=107.39 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+......|.++.. .|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+........+.+.
T Consensus 102 ~~~~~~~A~i~~~-~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 102 EIVQLLAATILFH-EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHCC-CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3444555666666 77777777766543 45666666677777777777777777777777666665555555565
Q ss_pred HHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh-HHH
Q 045024 137 LHHK--KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF-RKG 213 (1173)
Q Consensus 137 ~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~A 213 (1173)
+..| .+.+|...|++.....+.++..+..++.+++.+|++++|.+.++++++.+|+++.++.+++.+....|+. +.+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 5555 4777777777776666667777777777777777777777777777777777777777777777777777 445
Q ss_pred HHHHHHHHhhcCCCH
Q 045024 214 VEQFQLALKISSENV 228 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~ 228 (1173)
.+++.++...+|+++
T Consensus 256 ~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCCCh
Confidence 556666666777766
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.4e-07 Score=99.43 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYG 184 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 184 (1173)
.+.-+.-++.-+..+|+|+..|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5666777888899999999999999999999999999999999999999999999999999988753 4678999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 185 RAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 185 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+++..+|.++.+.+.+|..++..|+|.+|+..++.+++..|.+..-
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999998876543
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=9.1e-05 Score=87.34 Aligned_cols=333 Identities=13% Similarity=0.039 Sum_probs=173.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
.+.+...+|-.++|...|++.-+ +-.+-..|...|.+++|.+.-+.--.+ .-...+++.|.-+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence 34444555556666666655432 122334455555555555544321111 11234555555555566666
Q ss_pred HHHHHHHHH----------HhhcCCCHHHHHHH---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHH
Q 045024 212 KGVEQFQLA----------LKISSENVSAHYGL---ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCI 278 (1173)
Q Consensus 212 ~A~~~~~~a----------l~~~p~~~~a~~~l---a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~ 278 (1173)
.|+++|+++ +..+|.....+... -..+.-.|.+.+..|+.+.|+.+|..|...+.... +
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr--------I 947 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR--------I 947 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee--------e
Confidence 666666543 11122211111110 12345566777778888888888888877654221 0
Q ss_pred HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH
Q 045024 279 WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSL 358 (1173)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 358 (1173)
.-.. |+.++|-.. .....+..+.+.++..|...|++
T Consensus 948 ~C~q---------------------------------------Gk~~kAa~i-----A~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 948 KCIQ---------------------------------------GKTDKAARI-----AEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred Eeec---------------------------------------cCchHHHHH-----HHhcccHHHHHHHHHHhhhhHHH
Confidence 0011 112223222 22345677889999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhcCCC--HHHHHHHHHhhcccH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 045024 359 NEAYGHYQSAWHVSEKMALGALLLEGDN--CQFWVTLGCLSNYNG--LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEK 434 (1173)
Q Consensus 359 ~eA~~~~~~~~~~A~k~~~~al~~~p~~--~~~~~~Lg~~~~~~~--~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~ 434 (1173)
.+|...+.++ +.+..++++-..+ .+-+.+++......+ .+..+|+.. +.+ ...--.+|.+.|.+
T Consensus 984 ~~Av~FfTrA-----qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~---~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 984 VKAVKFFTRA-----QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY---AHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh---hhHHHHHHHhhcch
Confidence 9987765542 2234444443332 333444444433222 222333332 111 11223456667777
Q ss_pred HHHHHHHHH----------HHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCCh
Q 045024 435 KLARQAFDS----------ARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSS 504 (1173)
Q Consensus 435 e~A~~~f~~----------al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~ 504 (1173)
.+|++.-=+ +-.++|+.....++..++.+....+|++|..++-.+-+... +.-.+...+...
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~--------AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG--------ALQLCKNRNVRV 1123 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCCch
Confidence 777654211 12347777667777688888888899999887765544211 111111111111
Q ss_pred HHHHHHHHHHHH----hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 505 SQVFGAIQQAIQ----RGPH---YPESHNLYGLVCEARSDYQAAVVSYRLAR 549 (1173)
Q Consensus 505 ~~A~~~l~~al~----~~P~---~~~a~~~lg~i~~~~g~~~~A~~~~~kAl 549 (1173)
-+.+...+. ..|+ ....+..+|.++.++|.|..|-+-|.+|-
T Consensus 1124 ---tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1124 ---TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred ---hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 011111111 1222 24577889999999999999999999873
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.75 E-value=0.00094 Score=76.35 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhc---ccHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSN---YNGLKQ 404 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~---~~~~a~ 404 (1173)
.-.|++++..-+-.+++|+..+..+...++.-.. .|.+-. -..++.
T Consensus 265 ~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~-------------------------------~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 265 MYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTE-------------------------------KGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHH-------------------------------hcccccchhhHHHHH
Confidence 3456777777788888888777666544442111 111100 112344
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh-hHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 045024 405 HALIRGLQLD-VSLADAWAHIGKLYGEVGE---KKLARQAFDSARSIDPSLA-LPWAGMSADVQASESLVDDAFESCLRA 479 (1173)
Q Consensus 405 ~a~~kal~l~-p~~~~a~~~Lg~~y~~~g~---~e~A~~~f~~al~~~P~~~-~a~~~l~a~~~~~~g~~~eA~~~~~~a 479 (1173)
.+|++++..- ..+.-.++.+++.-...-+ ++.--..+++++.+...++ .+|.. ....-.+..-...|+.+|.++
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~-~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQ-YMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhH-HHHHHHHhhhHHHHHHHHHHH
Confidence 5566665332 2233444444444333333 6666777777776533222 24444 222333555578888899888
Q ss_pred HhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Q 045024 480 VQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGT 558 (1173)
Q Consensus 480 l~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~ 558 (1173)
-+..-.. ..+..-+.+..... .+.+-|...|+--+...++++..-......+...|+-..|...|++++.. ...
T Consensus 393 R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~--- 467 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLS--- 467 (656)
T ss_pred hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCC---
Confidence 8765444 44444444433222 23567899999999999999998888899999999999999999998643 111
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045024 559 VPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM 596 (1173)
Q Consensus 559 ~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p 596 (1173)
......+|...-..-..-|+...+++.=++.....|
T Consensus 468 --~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 468 --ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred --hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 112234666666666677887777776666554444
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=2.3e-07 Score=89.16 Aligned_cols=104 Identities=26% Similarity=0.323 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLES 200 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 200 (1173)
..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777777777777777777777776655 4567777777777777777777777777776664 4567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
|.++...|++++|+..++++++..|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777776543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=2.6e-07 Score=88.83 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLG 133 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la 133 (1173)
++.+|..+.. .|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..+++++...|++ +.++..+|
T Consensus 5 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3334444444 444444444444444433332 2233333444444444444444444333333332 23333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.++...|++++|+..+++++...|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 4444444444444444444444333
No 139
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.71 E-value=8.8e-06 Score=86.96 Aligned_cols=218 Identities=27% Similarity=0.347 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPD--DPSLHLDLGLHLWENSESKEKAAEHFVIAAK--LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 7 Ai~~l~~al~~~P~--~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
+...+...+...+. ........+..+...+. +..+...+...+. ..+.....+...|..+.. .+++..++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 119 (291)
T COG0457 42 ALELLEEALELLPNSDLAGLLLLLALALLKLGR-LEEALELLEKALELELLPNLAEALLNLGLLLEA-LGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHhcCccccchHHHHHHHHHHHHccc-HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 45666777777766 36777778888877777 8888888888886 677888888888988888 888999999999
Q ss_pred HHHhhCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 83 RAVSLSPDDSVSGEALCE-LLEHGGKESLEVVVCREASDKSP---RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 998887777555566666 78889999999999999887766 34556666667778888999999999999988888
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 159 -SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 159 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
....+..++..+...++++.|+..+..++...|.....+...+..+...|.++++...+.+.+...|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 68888888999999999999999999999888886677777777777777788999999988888876
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.70 E-value=3.5e-07 Score=94.15 Aligned_cols=134 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
.+..+...+...++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555565555555544 5677889999999999999999999998887653 4588999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 216 QFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 216 ~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
.|++++..+|.....+..++.++...|+.....|+++.|...+++++..+.+.....|.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999998889999999999999999999888877764
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=8.9e-06 Score=101.00 Aligned_cols=216 Identities=13% Similarity=0.062 Sum_probs=187.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHH-hCCCCH----HHHHHHHHHHHHccCCHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAK-LNPQNA----VAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~-~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
..+.|++.+..+|+..-.|...-...++.++ .++|.+.+++|+. +++... ..|..+-+.... -|.-+.-.+.|
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsE-iekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSE-IEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-YGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhh-hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-hCcHHHHHHHH
Confidence 3577889999999999999998888888888 9999999999994 555433 355555555555 67667788899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S 159 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~ 159 (1173)
++|.+.. +...++..|..+|...+++++|.++++.+++...+....|..+|..++++++-+.|...+.+|++.-|. +
T Consensus 1521 eRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 9988764 334678999999999999999999999999998888899999999999999999999999999999997 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
.+.....|.+-++.|+.+.+...|+..+...|...+.|.-+...-.+.|+.+.+...|++++.+.-
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 788888899999999999999999999999999999999999999999999999999999998653
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=4.8e-07 Score=90.88 Aligned_cols=200 Identities=18% Similarity=0.181 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..|-..|= +.-|.-.|.+++.+.|+-++++..+|..+.. .|+++.|.+.|+..++++|.+..+..+.|.
T Consensus 64 RA~l~fERGvlYDSlGL-~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhhH-HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccce
Confidence 56788999998888876 8999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
.++.-|++.-|.+.+.+-.+.+|++|.--..+-.. ...-+..+|...+.+-.+...+....|+..+.. .|+..+ .
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e 216 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-E 216 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-H
Confidence 99999999999999999999999987432222111 233466777665544333323233333332222 233221 2
Q ss_pred HHHHHHHHhCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 181 KSYGRAIELDDTS-------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 181 ~~~~~al~~~p~~-------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
..++++..-..++ .++++.+|..+...|+.++|...|+-++..+--+
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 2333333332222 5688999999999999999999999998765433
No 143
>PRK11906 transcriptional regulator; Provisional
Probab=98.67 E-value=1.2e-06 Score=99.77 Aligned_cols=160 Identities=9% Similarity=-0.006 Sum_probs=114.7
Q ss_pred HHHHHHHHHccCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCc
Q 045024 61 RYLGHYYTRFSID---TQRAIKCYQRAV---SLSPDDSVSGEALCELLEHG---------GKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 61 ~~lg~~~~~~~g~---~~eA~~~~~~al---~~~p~~~~a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~ 125 (1173)
+..|..... .+. .+.|...|.+++ +++|+...++-.++.++... .+..+|.+..+++++++|.|
T Consensus 259 ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 555655554 443 345667777777 77777777777777666433 23567778888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-H
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI-F 204 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~ 204 (1173)
+.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+..-.|+.++|++.++++++++|....+-...-.+ .
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888764443322222 3
Q ss_pred HHcCChHHHHHHHHHHH
Q 045024 205 LMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al 221 (1173)
+-....+.|+..|-+-.
T Consensus 418 ~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 418 YVPNPLKNNIKLYYKET 434 (458)
T ss_pred HcCCchhhhHHHHhhcc
Confidence 33455777887776543
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=4.9e-07 Score=93.43 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
+.+++.+|..+.. .|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++..++..+|
T Consensus 35 a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3445555555555 555555555555555444332 234555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 045024 134 YLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~ 151 (1173)
.++...|+...+...++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHcCChHhHhhCHHH
Confidence 555555554444443333
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=8.4e-07 Score=88.81 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~ 144 (1173)
.++...+...+++.++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+...++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566666555555 2335555555666666666666666655554432 3345555666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
|+..++. +...+..+.++..+|.+|...|++++|+..|+++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666544 2222333445555566666666666666665554
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.66 E-value=2.5e-07 Score=83.81 Aligned_cols=97 Identities=25% Similarity=0.468 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhhcC
Q 045024 209 NFRKGVEQFQLALKISS 225 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p 225 (1173)
++++|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666666554
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=0.0029 Score=76.70 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=90.7
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 183 (1173)
..+++.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|...|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44667777777777777777777777777777777777777776666665666666677777777777777777777777
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
++++..+|+ .+..+.+-.+|.+.+.|.+=.+.--+..+..|.++...+....+.
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 777777777 666666777777777766544444444445566665444443333
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.66 E-value=1e-06 Score=90.98 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
.++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555555555555555555555555444331 234555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHH
Q 045024 171 HRLGMFSAAIKSYGR 185 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~ 185 (1173)
...|+...+...+++
T Consensus 117 ~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 117 HKRGEKAEEAGDQDE 131 (172)
T ss_pred HHcCChHhHhhCHHH
Confidence 555554444433333
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=1.3e-06 Score=104.87 Aligned_cols=149 Identities=17% Similarity=0.243 Sum_probs=87.4
Q ss_pred CCCCHHHH--HHHHHHHHHccCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 045024 53 NPQNAVAF--RYLGHYYTRFSID---TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW 127 (1173)
Q Consensus 53 ~p~~~~a~--~~lg~~~~~~~g~---~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (1173)
.|.++.+| +..|..+.. .++ ..+|+.+|+++++++|++..++-.++.++.....+. |.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~-~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~~--- 395 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLN-SGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------PL--- 395 (517)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------Cc---
Confidence 34444433 444554544 433 556666677777777776666666555543221110 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
..++...+....++++.. +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++.
T Consensus 396 ----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 396 ----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred ----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 001233444444454443 555666666677777777777777777777777777 3667777777777
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
..|++++|++.|++++.++|.++.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 777777777777777777777664
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2.7e-06 Score=85.64 Aligned_cols=201 Identities=17% Similarity=0.083 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+..++..|..|-. .|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..
T Consensus 64 RA~l~fERGvlYDS-lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 64 RAQLLFERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHhcchhhh-hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35678889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYG-RAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
++--|++.-|.+.+.+-.+.+|++|---..+-.. ...-+..+|...+. ++...+.+ ...|...+ ..+|+..+ .
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS~-e 216 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKISE-E 216 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhccH-H
Confidence 9999999999999999999999987533222222 23446667766554 44443322 22222222 22344332 3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
..++++.....++...--.+..++.-+|+.+...|+.+.|...|+-|+.
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4556666655666666667888899999999999999999888877765
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.62 E-value=1.2e-06 Score=105.25 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=107.9
Q ss_pred hhCCCcHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 045024 120 DKSPRAFWAF--RRLGYLQLHHKK---WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL--------GMFSAAIKSYGRA 186 (1173)
Q Consensus 120 ~~~p~~~~a~--~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 186 (1173)
...|.+..+| +..|..+...++ ...|+.+|+++++++|++..++..++.++... ++...+.+..+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4445554443 445555555444 67888888888888888888888877776543 2345667777776
Q ss_pred HHh--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 187 IEL--DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 187 l~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+.+ +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|+...+...+.+|...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 664 677788899999999999999999999999999999 4789999999999999999999999999864
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.62 E-value=1.5e-06 Score=97.37 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDP-----SLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGL 492 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P-----~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~l 492 (1173)
.+.+..-|..|...|++++|.+.|.++....- ....-.+..++.++ +.+++++|+..|++++.+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y--------- 104 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIY--------- 104 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHH---------
Confidence 34566678888899999999999998876521 11111122245455 3447777777777766531
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 493 AKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR-SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 493 a~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~-g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
...|+. . .-...+..+|.+|... |++++|+++|++|+++.+.... ......++.++
T Consensus 105 ----~~~G~~--~--------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~ 161 (282)
T PF14938_consen 105 ----REAGRF--S--------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKA 161 (282)
T ss_dssp ----HHCT-H--H--------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred ----HhcCcH--H--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHH
Confidence 111210 0 1244678899999999 9999999999999998876432 23456678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC------H-HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccch
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLD------A-EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSS 636 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~------~-~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~ 636 (1173)
|.++...|+|++|++.|+++......+ . ..++..+.++...|+...|...+++..+.+|....+.
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 999999999999999999998753322 1 2446778899999999999999999998887655444
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.62 E-value=3.9e-07 Score=82.48 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred H
Q 045024 151 H 151 (1173)
Q Consensus 151 ~ 151 (1173)
+
T Consensus 93 ~ 93 (100)
T cd00189 93 K 93 (100)
T ss_pred H
Confidence 3
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=1.7e-06 Score=86.69 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=103.5
Q ss_pred HHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 045024 30 LHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLE 103 (1173)
Q Consensus 30 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~ 103 (1173)
...+..++ ...+...+++.++.+|+. ..+.+.+|.++.. .|++++|...|++++...|+. ..+.+.++.++.
T Consensus 19 ~~~~~~~~-~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 19 LQALQAGD-PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHCCC-HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 33345665 888988999999999998 5678889999999 999999999999999987665 346889999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
..|++++|+..++.+ ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999763 3444567888999999999999999999999874
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.60 E-value=1.3e-06 Score=99.36 Aligned_cols=118 Identities=11% Similarity=-0.021 Sum_probs=73.1
Q ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHc--------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH
Q 045024 7 LLLQLEDSL---EANPDDPSLHLDLGLHLWEN--------SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQ 75 (1173)
Q Consensus 7 Ai~~l~~al---~~~P~~~~~~~~lg~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~ 75 (1173)
|+..|.+++ ..+|+.+.++-.++.+++.. ..+..+|....+++++++|.++.++..+|.+... .++++
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~ 355 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAK 355 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchh
Confidence 466666666 66666666666666665543 1113455566666666666666666666666666 66666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
.|...|++|+.++|+.+.+++..|.+....|+.++|++.++++++++|..
T Consensus 356 ~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 356 VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 66666666666666666666666666666666666666666666666654
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.60 E-value=1.8e-07 Score=80.40 Aligned_cols=67 Identities=31% Similarity=0.490 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCC
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p 89 (1173)
++..|..+|.+++..++ +++|+..|+++++.+|+++.+++.+|.++.. .| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 45667777777776665 7777777777777777777777777777777 76 57777777777777666
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.58 E-value=1.2e-06 Score=90.16 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.++.+|.++.. .|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++...|.....+..+|.+
T Consensus 37 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34444444444 444444444444444443321 12344444444444444444444444444444443334344433
Q ss_pred HH
Q 045024 136 QL 137 (1173)
Q Consensus 136 ~~ 137 (1173)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 33
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=2.2e-07 Score=79.89 Aligned_cols=65 Identities=31% Similarity=0.561 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG-MFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 191 (1173)
..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444444444444443
No 159
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=0.0037 Score=71.67 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=166.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 12 ~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
++-++.+|.|..+|+.+-.-+-.+ . +++....|++.+...|..+.+|.......+. .++|+.-...|.+++..--+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkvLn- 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKVLN- 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhh-
Confidence 678899999999999998877544 4 8999999999999999999999999999999 99999999999999865433
Q ss_pred HHHH-HHHHHHHHHCCCHHHHHHHHHHH----Hh---hCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHH
Q 045024 92 SVSG-EALCELLEHGGKESLEVVVCREA----SD---KSPRAFWAFRRLGYLQL---------HHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 92 ~~a~-~~La~~~~~~g~~~~A~~~~~~a----l~---~~p~~~~a~~~la~~~~---------~~g~~~~A~~~l~~al~ 154 (1173)
.+.| ..+..+-...|+...+....-++ +. .++.....|...+..+. .+.+.+.....|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 3443 33444455555555444433333 22 34455555555444332 23366677788888886
Q ss_pred hCCCCHH-HHH-----------HHH--HHHHHcCCHHHHHHHHHHHHHhC-------CC-----------ChHHHHHHHH
Q 045024 155 GYPTSPH-LWE-----------ALG--LAYHRLGMFSAAIKSYGRAIELD-------DT-----------SIFPLLESGN 202 (1173)
Q Consensus 155 ~~p~~~~-~~~-----------~la--~~~~~~g~~~~A~~~~~~al~~~-------p~-----------~~~a~~~la~ 202 (1173)
.--.+.+ .|. ..| .+-.+...|-.|...+++...+. |. ..+.|.++..
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 5333321 111 111 12233455667777776655431 11 1222333333
Q ss_pred HHHHcC------Ch--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 203 IFLMLG------NF--RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 203 ~~~~~g------~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
.-...+ .. ..-.-.|++++..-+-.++.|+..+..+...++.+...|+...|-..-.++...+.....
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 222211 11 123346788888888899999999999999899888888888777777777777666543
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=8.5e-05 Score=79.24 Aligned_cols=246 Identities=24% Similarity=0.263 Sum_probs=193.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Q 045024 12 EDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ--NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS--L 87 (1173)
Q Consensus 12 ~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~--~ 87 (1173)
.......+.........+.........+..+...+...+...+. ........+..+.. .+++..+...+...+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 90 (291)
T COG0457 12 LEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLK-LGRLEEALELLEKALELEL 90 (291)
T ss_pred hHHHHhChhhHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH-cccHHHHHHHHHHHHhhhh
Confidence 33334444444444444444444322378888888888888876 47888899999999 9999999999999997 6
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY-LQLHHKKWSEAVQSLQHAIRGYP---TSPHLW 163 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~ 163 (1173)
.+.....+...+..+...+++..++..+..++...+.+.......+. ++...|+++.|...+.+++..+| ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 88888899999999999999999999999999988877555566666 89999999999999999988777 456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLA 242 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~ 242 (1173)
...+..+...++++.|+..+.+++...+. ....+..++..+...+++++|...+..++...|.........+..+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-- 248 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH--
Confidence 77777788999999999999999999999 689999999999999999999999999999998844444444444442
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHH
Q 045024 243 KQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 243 ~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
.+.+..+...+.+++...
T Consensus 249 -----~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 249 -----LGRYEEALEALEKALELD 266 (291)
T ss_pred -----cCCHHHHHHHHHHHHHhC
Confidence 223555554455444433
No 161
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.8e-06 Score=95.77 Aligned_cols=114 Identities=23% Similarity=0.313 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPT---------------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
...|..+++.|+|..|...|++++..-+. -..++.+++.++.++++|.+|+..++++|+++|+|+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 44566777777777777777776654221 134788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.++++.|.++..+|+|+.|+..|+++++.+|+|..+...+..+-.+..+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887777666555444
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.48 E-value=3.9e-07 Score=81.75 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=7.0
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~ 151 (1173)
|.++++.|++++|+..+++
T Consensus 32 a~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333333333333333
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.48 E-value=3.1e-07 Score=82.39 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
.+|++++|+..+++++..+|. +...++.+|.+|++.|++++|+..+++ .+.+|.++...+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466778899999999999999999999 88888888899999999999999999999
Q ss_pred HHHHH
Q 045024 216 QFQLA 220 (1173)
Q Consensus 216 ~~~~a 220 (1173)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=98.47 E-value=2.5e-06 Score=84.07 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=86.8
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 045024 120 DKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 120 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
.+.++.-+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+|+|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 33444556677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.|.++..+|+.+.|+..|+.++. .|.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 88888888888888888888877 34433
No 165
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.46 E-value=5.1e-05 Score=82.04 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCCHHHHHHHHHHHHh----hCCCC--HH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRFSIDTQRAIKCYQRAVS----LSPDD--SV 93 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~~g~~~eA~~~~~~al~----~~p~~--~~ 93 (1173)
.-....|.-++...+ +++|+..+.+.+..-.+... .+-.+..+... +|.|++++..--..+. .+..+ -+
T Consensus 7 k~q~~~g~~Ly~s~~-~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~-~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQ-TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE-MGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHHHhHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776 99999999998865444332 33334566677 7888877665433333 22222 24
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA-----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHL 162 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~ 162 (1173)
++..+++.+.+..++.+++.+..-.+...... ......+|..+.-++.++++++.|+.+++...++ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 58889999999999999999988877764332 3566779999999999999999999999864432 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDT----S------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
+..+|..+.+..|+++|.-...++.++... + ..+++.++..+..+|+...|.++.+++.++.-...+ .-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd-ra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD-RA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-hH
Confidence 789999999999999999999998887432 2 345678899999999999999999999876433221 11
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
..+.+...+++++...|+.+.|..-|++|......
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 34667788888888999999999999988876544
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=5.4e-07 Score=76.40 Aligned_cols=62 Identities=21% Similarity=0.370 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445555555555555555555555555555555555555555555555555555555544
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=6.5e-07 Score=75.86 Aligned_cols=63 Identities=29% Similarity=0.463 Sum_probs=37.2
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 34555555555 6666666666666666666666666666666 666666666666666666654
No 168
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.43 E-value=6e-06 Score=90.39 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=94.0
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHH
Q 045024 126 FWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLL 198 (1173)
Q Consensus 126 ~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~ 198 (1173)
....+..+..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666777765 66799999999999999999987 589999999999999999999999999998887 478899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+|.++..+|++++|...|+++++..|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999998754
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.41 E-value=4.5e-06 Score=93.56 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=114.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--C----cHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSP--DD----SVSGEALCELLEHGGKESLEVVVCREASDKSP--R----AFWAFR 130 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p--~~----~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~ 130 (1173)
.|..|.. .|++++|..+|.++.+..- ++ ...+...+.++.+. ++++|+.++++++...- + -...+.
T Consensus 41 Aa~~fk~-~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKL-AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHH-TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHH-HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3556666 7777777777777765431 11 12245555555444 88888888888876521 1 245677
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------h-HH
Q 045024 131 RLGYLQLHH-KKWSEAVQSLQHAIRGYP--TS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------I-FP 196 (1173)
Q Consensus 131 ~la~~~~~~-g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~-~a 196 (1173)
.+|.+|... |++++|++.|++++.... +. ...+..+|.++.+.|+|++|++.|+++....-++ . ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 889999888 999999999999988632 11 4467789999999999999999999998754221 1 34
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
++..+.+++..|++..|...+++....+|....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 566788899999999999999999999886543
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=98.40 E-value=3.6e-06 Score=82.96 Aligned_cols=100 Identities=11% Similarity=-0.149 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
++..+..+..|.-++..|++++|...|+-+...+|.++..+..+|.++..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33444566666666666667777666666666666666666667777777777777777777666666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 045024 169 AYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 169 ~~~~~g~~~~A~~~~~~al~ 188 (1173)
+|...|+.+.|+..|+.+++
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 77777777777777766666
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.40 E-value=7.6e-06 Score=89.61 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHH-HccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHH
Q 045024 23 SLHLDLGLHLW-ENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSG 95 (1173)
Q Consensus 23 ~~~~~lg~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~ 95 (1173)
...|..+..+. ..++ |++|+..|++.++..|++ +.+++.+|.+|+. .|++++|+..|+++++..|++ ++++
T Consensus 143 ~~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSR-QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34444444432 2233 555555555555555554 3455555555555 555555555555555544442 3334
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 96 EALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
+.+|.++...|++++|+..|+++++..|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444555545555555555555555554444
No 172
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=3.5e-05 Score=95.98 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh-hCCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS-LSPDDS----VSGEALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~-~~p~~~----~a~~~La~~~~~~g~~~~A~~~~ 115 (1173)
+..+.|++.+.-+|+....|...-....+ .++.++|.+.+++|+. +++... ..|..+-++...-|.-+.-.+.|
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~Le-lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLE-LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhh-hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 45677889999999999999999999999 9999999999999986 454433 34666667777778888888899
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 045024 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--S 193 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 193 (1173)
+++.+... ....+..|..+|...+.+++|.++|+.+++........|..+|..++++.+-++|...+.+|++--|. +
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 99987643 34678889999999999999999999999998888999999999999999999999999999999998 7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.......|.+.++.|+.+.+...|+..+..+|...+.|.-+...-+..+. ......+|++++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~-------~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD-------IKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC-------HHHHHHHHHHHHh
Confidence 78888899999999999999999999999999999998766665555444 4445555555554
No 173
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6e-06 Score=91.76 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.....|..|++ .|+|..|...|++++..-+..... +.++.... . ++ -..++.+++.++.+
T Consensus 210 ~~ke~Gn~~fK-~gk~~~A~~~Yerav~~l~~~~~~------------~~ee~~~~-~-~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 210 RKKERGNVLFK-EGKFKLAKKRYERAVSFLEYRRSF------------DEEEQKKA-E-AL-----KLACHLNLAACYLK 269 (397)
T ss_pred HHHHhhhHHHh-hchHHHHHHHHHHHHHHhhccccC------------CHHHHHHH-H-HH-----HHHHhhHHHHHHHh
Confidence 34567888888 888888888888887643221110 00010000 0 00 12456778888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH-HHHH
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG-VEQF 217 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~ 217 (1173)
+++|.+|+....+++..+|+|..+++..|.++...|+|+.|+..|+++++++|+|-.+...+..+..+..++.+. .+.|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888877777777777766655544 6777
Q ss_pred HHHHhhcC
Q 045024 218 QLALKISS 225 (1173)
Q Consensus 218 ~~al~~~p 225 (1173)
.+++..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 77776544
No 174
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.37 E-value=5.7e-05 Score=79.75 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFR 130 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 130 (1173)
+..++.-|...++ .|++++|...|+.+....|..+ .+...++..+++.+++++|+...++-+.+.|++ ..+++
T Consensus 34 ~~~LY~~g~~~L~-~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQ-KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4556666666666 6666666666666666555443 345566666666666666666666666665554 23445
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 131 RLGYLQLHH--------KKWSEAVQSLQHAIRGYPTS-----------------PHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 131 ~la~~~~~~--------g~~~~A~~~l~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
..|.+++.. .-..+|+..|+..+...|+. ..--..+|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555554432 12345566666666666654 12234678899999999999999999
Q ss_pred HHHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 186 AIELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 186 al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+++..|+. .+++..+..+|..+|-.++|...-.-+-...|+++
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99987664 57788899999999999998776554444445544
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=8.8e-06 Score=93.54 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=110.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
-..+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++..+|.+...+...+..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 344555667778999999999999988875 45668999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+++.|++..+++++..|++...|+.|+.+|...|+++.|+..+..+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999998877553
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=9.9e-06 Score=93.15 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=110.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+-.++.. .++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 175 Ll~~l~~-t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSL-TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhh-cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 4455556 88999999999999988865 6667999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
+.|+...++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999887754
No 177
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.29 E-value=2.4e-07 Score=98.61 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=133.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
.-..|.-|+.+|. |++|+.+|.+++..+|.++..+.+.+.+|++ .+.+..|......++.++.....+|...+..-..
T Consensus 100 iKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGK-YEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccc-hhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4567899999998 9999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 105 GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH----------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
.|+..+|.+.++.++++.|++.+..-.++.+-.-. | +-+|.+...+++. .-.-|..+...|
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G-~~~A~Q~~~Q~l~--------~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPG-FTPARQGMIQILP--------IKKPGYKFSKKA 248 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCC-CCccccchhhhcc--------ccCcchhhhhhh
Confidence 99999999999999999999765544433332100 1 1111111111111 112255556666
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.++.++.++.+-+..+.++...... +..|.+.-+++.|+...-+.+..+|..
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 6666666665555444333322222 455555556666665555555554443
No 178
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.27 E-value=0.022 Score=67.04 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLS 499 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~ 499 (1173)
.|-.+++-|...|+|+-|.+.|.++=. +.-....|.+.|++.+|..+-.+...-......+...+.-.-..
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhh
Confidence 455678889999999999999987521 12245578889999999887666543221112222222111112
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHhhcCCCCCCCCchHHHHHHHHH
Q 045024 500 GHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA------RYAISSSSGTVPNSHFQDISINLAR 573 (1173)
Q Consensus 500 g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA------l~l~~~~pe~~~~~~~~~~~~~La~ 573 (1173)
|+ +.+|. .+|...|..+.|+..|++. +++.+..- ..+.......+|.
T Consensus 838 gk--f~eae---------------------qlyiti~~p~~aiqmydk~~~~ddmirlv~k~h----~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 838 GK--FAEAE---------------------QLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH----GDHLHDTHKHFAK 890 (1636)
T ss_pred cc--hhhhh---------------------heeEEccCchHHHHHHHhhCcchHHHHHHHHhC----hhhhhHHHHHHHH
Confidence 22 11111 2333345555555555542 22222211 2233456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 574 SLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMAR 623 (1173)
Q Consensus 574 ~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~ 623 (1173)
-|...|+...|.+.|-++- -+-.....|-..+-+++|....+
T Consensus 891 e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 7888888888877776652 11122344555566666654443
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.25 E-value=0.00021 Score=75.47 Aligned_cols=171 Identities=16% Similarity=0.101 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH---
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS--- 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a--- 94 (1173)
.+..++.-|...++.|+ +++|+..|+.+....|.. ..+...++.++.+ .+++++|+...++-+.+.|.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn-~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGN-YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 46789999999999988 999999999999988876 4688999999999 999999999999999999988764
Q ss_pred HHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 045024 95 GEALCELLEHGG--------KESLEVVVCREASDKSPRAF-----------------WAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 95 ~~~La~~~~~~g--------~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++..|..+...= -..+|...|+..+...|++. .--..+|..|.+.|.+..|+.-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 666666664331 24578888888999999752 11235788999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 150 QHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 150 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++++..|+. .+++..+..+|...|-.++|.+.-.-.-...|++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999987754 5678889999999999999987654433334444
No 180
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.0066 Score=71.15 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=76.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
.|.-+.. .|+++.|+..|-.+-. ...-........++.+|+.+++.+..... ....|-.++.-|...|+|
T Consensus 712 wg~hl~~-~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQ-IGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHH-HHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhH
Confidence 4555566 7777777777655421 11222333445567777776665543322 223455677778888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
+.|.+.|.++- ....-..+|.+.|++++|.+.-++... |.. ...+...+.-+-..|+|.+|.+.|
T Consensus 782 e~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 782 EIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88888887642 223345667778888887777666532 332 233444455555555555544443
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.23 E-value=0.00013 Score=72.20 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=126.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHcCC
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD-KSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~ 141 (1173)
++....+ .=|.+....-..+.++..|.. .-.+.||......|++.+|...|++++. +...++..+..++...+..++
T Consensus 62 ~~~a~~q-~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQ-KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHH-hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3344444 556666666666666666654 4477889999999999999999998864 355678888899999999999
Q ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
+..|...+++..+.+| ..++....+|+++...|++.+|...|+.++...|+ +.+....+..+.++|+.++|...+..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999998887 45777888999999999999999999999998876 56777888999999998888877766
Q ss_pred HHhh
Q 045024 220 ALKI 223 (1173)
Q Consensus 220 al~~ 223 (1173)
+.+.
T Consensus 219 v~d~ 222 (251)
T COG4700 219 VVDT 222 (251)
T ss_pred HHHH
Confidence 6553
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=2.3e-05 Score=74.63 Aligned_cols=94 Identities=19% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---cHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPR---AFWAFRRL 132 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 132 (1173)
+++.+|.++.. .|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +......+
T Consensus 3 ~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 44555555555 555555555555555543322 223444555555555555555555555444444 33444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al 153 (1173)
+.++...|++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 444455555555554444433
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=0.00024 Score=70.23 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 107 KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIR-GYPTSPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
|++....-..+.+...|.. .-.+.+|......|++.+|...|++++. +.-+++..+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4444444455555555543 3345677777777777777777777765 3446667777777777777777777777777
Q ss_pred HHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHH
Q 045024 186 AIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 186 al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+..+|+..++...+.
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 7777665 4566677777777777777777777777777665 4455556666667776555544443
No 184
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.20 E-value=0.00015 Score=78.50 Aligned_cols=166 Identities=13% Similarity=0.100 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS-----VSGEALCELLEHGGKESLEVVVCREASDKSPRA------ 125 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------ 125 (1173)
.+++..+++.+.. ..++.+++.+-...+.+....+ .+...++..+.-.+.++++++.|+.+++...++
T Consensus 83 ~ea~lnlar~~e~-l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 83 LEAYLNLARSNEK-LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 4777777777777 7777777777776666532222 346667777777777888888888777664332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP----TS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELD----- 190 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 190 (1173)
-.++..+|..|....|+++|..+..++.++-. ++ ..+++.++..+..+|...+|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 24566777778888888888777777766532 11 2345667777777788888887777776652
Q ss_pred -CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 191 -DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 191 -p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+-......-+|.+|...|+.+.|..-|+.+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 113445566778888888888887777777654
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=3.2e-05 Score=73.58 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---SPHLWEALG 167 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~la 167 (1173)
+.+.+|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45666666666677777777776666654332 445666666666666666666666666666665 555566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~ 188 (1173)
.++...|+.++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666655543
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.17 E-value=3.1e-06 Score=90.33 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=68.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
-..|.-|++ +|.|++|+.+|.+++..+|.++..+.+.+..|++...+..|...+..++.++.....+|.+.|..-..+|
T Consensus 101 KE~GN~yFK-QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 101 KERGNTYFK-QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHhhhhhhh-ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 445666666 6677777777777666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
...+|.+.++.++++.|++.+..-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH
Confidence 666666666666666666554433
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.15 E-value=5.6e-06 Score=70.77 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3344444444444444444444444444444444444444444444444444433
No 188
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.0042 Score=70.14 Aligned_cols=318 Identities=14% Similarity=0.080 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCC--------CHHHHHHHH
Q 045024 323 AAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGD--------NCQFWVTLG 394 (1173)
Q Consensus 323 ~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~--------~~~~~~~Lg 394 (1173)
....+....+.++....+.+......+..++..|++.+|.+.+. ..-+...|. ...+|+++|
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~----------~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL----------VSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH----------hcccccccCccccchhhhheeecCcc
Confidence 34456666677777777888888889999999999998854322 122333333 356789999
Q ss_pred HhhcccH---HHHHHHHHHHh---------cC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 045024 395 CLSNYNG---LKQHALIRGLQ---------LD---------VSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL 453 (1173)
Q Consensus 395 ~~~~~~~---~a~~a~~kal~---------l~---------p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~ 453 (1173)
.+++..+ .+...|.++++ +. .+..++.++.|..|...|++-.|.++|.++....-.+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9988544 44566788874 11 135689999999999999999999999999999999999
Q ss_pred HHHHhHHHHHH---hcCCHHHHHHHHHH--HHh--------------c---------CCchHHHHHHHHHHHHhCCCChH
Q 045024 454 PWAGMSADVQA---SESLVDDAFESCLR--AVQ--------------I---------LPLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 454 a~~~l~a~~~~---~~g~~~eA~~~~~~--al~--------------~---------~p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.|+. ++++.. +.|-.++......+ ... . +..|.....++.+..+.+-.-..
T Consensus 371 lWLR-lAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~ 449 (696)
T KOG2471|consen 371 LWLR-LAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLN 449 (696)
T ss_pred HHHH-HHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCc
Confidence 9999 554543 22222322222211 000 0 01122223333333222211000
Q ss_pred H--HH-HHHHH-----------------------------HHHhCCCCH-----------HHHHHHHHHHHHcCCHHHHH
Q 045024 506 Q--VF-GAIQQ-----------------------------AIQRGPHYP-----------ESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 506 ~--A~-~~l~~-----------------------------al~~~P~~~-----------~a~~~lg~i~~~~g~~~~A~ 542 (1173)
+ -. ..+.- .+..-|+.| ..+...+.+..+.||.-.|.
T Consensus 450 e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL 529 (696)
T KOG2471|consen 450 EKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKAL 529 (696)
T ss_pred hhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 0 00 00000 000001111 13345677778899999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHc-----------------------
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSL-----SRAGNALDAVRECESLERQ----------------------- 594 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~-----~~~g~~~eAi~~~~~~~~~----------------------- 594 (1173)
..-++.+... +...++.-||.+| +.+.+..+|+..+.-..--
T Consensus 530 ~~a~kLLq~~----------~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l 599 (696)
T KOG2471|consen 530 SAATKLLQLA----------DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETL 599 (696)
T ss_pred HHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhcccccc
Confidence 9888876542 2233555555554 5577888888766542100
Q ss_pred C----------CCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhH
Q 045024 595 G----------MLDA-----EVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTIN 659 (1173)
Q Consensus 595 ~----------p~~~-----~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~ 659 (1173)
+ |.++ ..++++|.++.-.|++|+|...+..+....+. ...+.+...-.-+-...|....|..
T Consensus 600 ~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs---~v~~~A~~lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 600 DPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHS---LVNVQATVLAVYIDLMLGRSQDALA 676 (696)
T ss_pred CCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc---cccHHHHHHHHHHHHhcCCCcchHH
Confidence 0 1111 13377888999999999999988877765541 1223344444444556677777765
Q ss_pred HhhhC
Q 045024 660 SILKM 664 (1173)
Q Consensus 660 ~l~~~ 664 (1173)
.|...
T Consensus 677 ~lk~~ 681 (696)
T KOG2471|consen 677 RLKQC 681 (696)
T ss_pred HHHhc
Confidence 55443
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=3e-05 Score=77.28 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
.+-.-|.-++..|+|++|..-|..++.+.|.. ...+.+.|.+.++++.++.|+..+.++++++|.+..++.+.|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34456888899999999999999999998864 3467788999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+|.++..|++|++.|.++++.+|....+......+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999987776555443
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=4.4e-05 Score=81.38 Aligned_cols=103 Identities=23% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFPLLESGN 202 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 202 (1173)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888899999999999999999999999865 6799999999999999999999999999988774 688999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987664
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.13 E-value=7.8e-06 Score=69.89 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3444444444444444444444444444444444444444444444444444444333
No 192
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.033 Score=63.30 Aligned_cols=197 Identities=13% Similarity=0.007 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh--------HHH-HhHHHHHHhcCCHHHHHHHHHHHHhcCCchH---
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLAL--------PWA-GMSADVQASESLVDDAFESCLRAVQILPLAE--- 487 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~--------a~~-~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~--- 487 (1173)
.+-++..+-.-.|++.+|++....+.+..-..+. +.+ .++|.-....+.++.|...|..+.+.....+
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445566666778888888777776664222221 111 1134333356778888888887777644322
Q ss_pred -HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 045024 488 -FQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY----------PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSS 556 (1173)
Q Consensus 488 -~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~----------~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~p 556 (1173)
....++..+...++ +...++-.-...|.+ ..+++..|...+.++++.+|.....+.++..+.
T Consensus 405 ~~nlnlAi~YL~~~~-----~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-- 477 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGD-----AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-- 477 (629)
T ss_pred HHHHhHHHHHHHhcc-----HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--
Confidence 23344555555554 222222222234431 235677888888999999999999988766422
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCHHHH---HHHHHHHHHcCC--hHHHHHHHHH
Q 045024 557 GTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ---GMLDAEVL---QVYAFSLWQLGK--YDLALSMARN 624 (1173)
Q Consensus 557 e~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~---~p~~~~~~---~~la~a~~~~g~--~~eA~~~~~~ 624 (1173)
++ ..+-.+..+.-|+.+....|+..++.+...-+... -|+-+.-+ -.+-.+|...|+ .++.-+.|..
T Consensus 478 ed-~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 478 ED-LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hh-HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 11 12333456667888889999998888877766543 34433322 334566677777 5555555543
No 193
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00039 Score=78.12 Aligned_cols=218 Identities=14% Similarity=0.071 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CH-HHHHHHHHHHHHccCCHHHHHHHHHH---HHhh---CCC
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NA-VAFRYLGHYYTRFSIDTQRAIKCYQR---AVSL---SPD 90 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~-~a~~~lg~~~~~~~g~~~eA~~~~~~---al~~---~p~ 90 (1173)
...+++.|.+++.... +..|++.....+..-.. .+ ..-...-..+.. ...-++|+.++.- .+.. .|.
T Consensus 100 t~~~yn~aVi~yh~~~-~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~-t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEE-NGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAE-TSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred hHHhhhhheeeeeHhh-cchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5678888999888876 78888876665532211 11 122233334444 5555666655432 2211 010
Q ss_pred --C-------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 91 --D-------------------------SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 91 --~-------------------------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
+ ..+.......+....+...+..-.+.+.....+.+.+.......++..|++.
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 0 0123344455666667777777777777777788889999999999999999
Q ss_pred HHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CChHH
Q 045024 144 EAVQSLQHA-IRGYPT--------SPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---------DD---------TSIFP 196 (1173)
Q Consensus 144 ~A~~~l~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~a 196 (1173)
+|.+.+... +...|. ....|.++|.++++.|.|..+...|.++++. .| ...+.
T Consensus 258 kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ei 337 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEI 337 (696)
T ss_pred HHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhh
Confidence 999988653 122222 2335689999999999999999999999961 11 24678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+++.|..|...|++-.|.++|.++......+|..|..++.+.+..
T Consensus 338 lYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 338 LYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999887654
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.11 E-value=1.4e-05 Score=69.46 Aligned_cols=58 Identities=28% Similarity=0.525 Sum_probs=23.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
|...+++++|+.++++++..+|+++..+..+|.++...|++++|+..++++++..|++
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3333344444444444444444333333334444444444444444444444333333
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.08 E-value=1.6e-05 Score=69.05 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=63.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
|..+|...+++++|++.+++++..+|+++..+..+|.++...|++++|+..|+++++..|+++.+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999998876543
No 196
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.07 E-value=0.083 Score=66.11 Aligned_cols=471 Identities=16% Similarity=0.054 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHCCCH
Q 045024 39 KEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD--DSV----SGEALCELLEHGGKE 108 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~--~~~----a~~~La~~~~~~g~~ 108 (1173)
...|+.+++-+++..+- .+.+++.+|.++.....++++|..++++++.+... ..+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 35678888877742222 24678889999986589999999999999877643 332 245667888877776
Q ss_pred HHHHHHHHHHHhhCCC---cHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHcCCH
Q 045024 109 SLEVVVCREASDKSPR---AFW--AFRRL-GYLQLHHKKWSEAVQSLQHAIRGY--PTSPHLW----EALGLAYHRLGMF 176 (1173)
Q Consensus 109 ~~A~~~~~~al~~~p~---~~~--a~~~l-a~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~----~~la~~~~~~g~~ 176 (1173)
. |...+++.++...+ ..+ .+..+ .......+++..|++.++...... +.++.+. ...+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 99999988776444 222 22222 333333479999999999887765 3444432 3346666777888
Q ss_pred HHHHHHHHHHHHhC------CC----ChHHHHHHHHH--HHHcCChHHHHHHHHHH---HhhcCCCH-------------
Q 045024 177 SAAIKSYGRAIELD------DT----SIFPLLESGNI--FLMLGNFRKGVEQFQLA---LKISSENV------------- 228 (1173)
Q Consensus 177 ~~A~~~~~~al~~~------p~----~~~a~~~la~~--~~~~g~~~~A~~~~~~a---l~~~p~~~------------- 228 (1173)
+++++..+++.... |. ...++..+-.+ +...|+++.+...+++. ++...+.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888888774422 11 23344444333 45567766666554433 22111100
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-hhcCChHHHHHHhchHHHH
Q 045024 229 -------------------SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-RLAGNMSCIWKLHGDIQLT 288 (1173)
Q Consensus 229 -------------------~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-~~~~~~~~~~~~~g~~~~~ 288 (1173)
+-....+.+|.-.|-.....+..+++..+++++++...+.. .........
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s---------- 345 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES---------- 345 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC----------
Confidence 00112334444445555555666688888888888776654 000000000
Q ss_pred HhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 289 YAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
... ..+-.. ..+.+. .......+......+++.++......
T Consensus 346 -----------------l~~---------------~~~~~~-~~~~l~-----~~~~~y~~~~~~~~~~~~~a~~~l~~- 386 (608)
T PF10345_consen 346 -----------------LSE---------------ASERIQ-WLRYLQ-----CYLLFYQIWCNFIRGDWSKATQELEF- 386 (608)
T ss_pred -----------------HHH---------------HHHhHH-HHHHHH-----HHHHHHHHHHHHHCcCHHHHHHHHHH-
Confidence 000 000000 000000 11223333333334444333221110
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFD------ 442 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~------ 442 (1173)
........|.. -...-.+.+++..|..+...|+.+.|...|.
T Consensus 387 -------~~~~~~~~~~~-------------------------~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 387 -------MRQLCQRSPSK-------------------------LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred -------HHHHHhcCccc-------------------------hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 00000001100 0012257788999999999999999999998
Q ss_pred --HHHhhCCCChhHHHHh--HHHHHHhcCCHHH----HHHHHHHHH---hcCCchHHHHHHHHHHHH---hCCCChHHHH
Q 045024 443 --SARSIDPSLALPWAGM--SADVQASESLVDD----AFESCLRAV---QILPLAEFQIGLAKLAKL---SGHLSSSQVF 508 (1173)
Q Consensus 443 --~al~~~P~~~~a~~~l--~a~~~~~~g~~~e----A~~~~~~al---~~~p~~~~~~~la~l~~~---~g~~~~~~A~ 508 (1173)
.+....+.+....+.. ...++...+...+ ..+.++..- ...|..........+... .......++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 4444444443222221 2334444443222 333333221 122222222222222111 1222334666
Q ss_pred HHHHHHHHhC-C---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 045024 509 GAIQQAIQRG-P---H---YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNA 581 (1173)
Q Consensus 509 ~~l~~al~~~-P---~---~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~ 581 (1173)
..+...++.. . + -..++..++..+. .|+..+......++..+....|+....-....+-.-+...+...|+.
T Consensus 515 ~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~ 593 (608)
T PF10345_consen 515 RHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDR 593 (608)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcH
Confidence 6666666543 1 1 2234566777777 79999988888887766555433221000111222356667888999
Q ss_pred HHHHHHHHHHH
Q 045024 582 LDAVRECESLE 592 (1173)
Q Consensus 582 ~eAi~~~~~~~ 592 (1173)
++|.....+..
T Consensus 594 ~ka~~~~~~~~ 604 (608)
T PF10345_consen 594 DKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHH
Confidence 99988777653
No 197
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.042 Score=62.45 Aligned_cols=463 Identities=14% Similarity=0.022 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---CCC---
Q 045024 23 SLHLDLGLHLWENS--ESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS---PDD--- 91 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~--~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~---p~~--- 91 (1173)
.++..++..+...+ + ...++++++......|.+ +..+..+|.+++.+..+++.|...++++..+. |+.
T Consensus 8 ~aLlGlAe~~rt~~PPk-Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPK-IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHhhcCChh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 45566666665554 4 688999998888777664 46778889888887899999999999997654 333
Q ss_pred -HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HH
Q 045024 92 -SVSGEALCELLEHGG-KESLEVVVCREASDKSPRAF----WAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTS---PH 161 (1173)
Q Consensus 92 -~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~ 161 (1173)
.++...|+.+|.... .+..+...+++++++....| ...+.++.++.-..|+..|++.+.-.... ++.. ..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 234677888887766 78889999999999877654 34567888888889999998885432221 1111 11
Q ss_pred HHH--HHHHHHHHcCCH---HHHHHHHHHHHHhCCCCh-------HHHHHHHH-HHHHcCChHHHHHHHHHH---Hh-hc
Q 045024 162 LWE--ALGLAYHRLGMF---SAAIKSYGRAIELDDTSI-------FPLLESGN-IFLMLGNFRKGVEQFQLA---LK-IS 224 (1173)
Q Consensus 162 ~~~--~la~~~~~~g~~---~~A~~~~~~al~~~p~~~-------~a~~~la~-~~~~~g~~~~A~~~~~~a---l~-~~ 224 (1173)
..+ ..+.++....+. +.+.....+..+....++ ..+..+-. .|...|+...+...+++. +. +.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 111 223333333333 344444444444333222 11222222 244567776666555543 22 11
Q ss_pred CC-----------C-HH--HHH----HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHH
Q 045024 225 SE-----------N-VS--AHY----GLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQ 286 (1173)
Q Consensus 225 p~-----------~-~~--a~~----~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~ 286 (1173)
+. + +. .|. .-+.++...-......|.++++..+-++++....+..+...... +......+.
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sr-ilsm~km~~ 325 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSR-ILSMFKMIL 325 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhH-HHHHHHHHH
Confidence 21 1 00 111 11233333333334567788888888888877665544332111 111111111
Q ss_pred HHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH---hcCCCCH-------HHHHHHHHHHHHHh
Q 045024 287 LTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL---YLAPWQA-------NIYTDIAITSDLIY 356 (1173)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~l~p~~~-------~~~~~la~~~~~~g 356 (1173)
.... . .-..-.+++.+|++....+. ...|... .+...+|......+
T Consensus 326 LE~i-----------------------v-~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~ 381 (629)
T KOG2300|consen 326 LEHI-----------------------V-MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN 381 (629)
T ss_pred HHHH-----------------------H-HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc
Confidence 0000 0 00011122334444333333 3334321 22222332222233
Q ss_pred hHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCC-C--cHHHHHHHHHHHHHcCC
Q 045024 357 SLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDV-S--LADAWAHIGKLYGEVGE 433 (1173)
Q Consensus 357 ~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p-~--~~~a~~~Lg~~y~~~g~ 433 (1173)
.++.| ...|..+.+... . .+....+++..|.+.|+
T Consensus 382 ~~enA------------------------------------------e~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~ 419 (629)
T KOG2300|consen 382 CYENA------------------------------------------EFHFIEATKLTESIDLQAFCNLNLAISYLRIGD 419 (629)
T ss_pred hHHHH------------------------------------------HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc
Confidence 33333 223333332211 1 23445678999999877
Q ss_pred HHHHHHHHHHHHhhCCCCh----------hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCC
Q 045024 434 KKLARQAFDSARSIDPSLA----------LPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLS 503 (1173)
Q Consensus 434 ~e~A~~~f~~al~~~P~~~----------~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~ 503 (1173)
-+.--+.++. +.|.+. ..++- .|......+++.||...+++.++... .+-...+
T Consensus 420 ~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v-~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL----------- 483 (629)
T KOG2300|consen 420 AEDLYKALDL---IGPLNTNSLSSQRLEASILYV-YGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRL----------- 483 (629)
T ss_pred HHHHHHHHHh---cCCCCCCcchHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHH-----------
Confidence 6654444443 455431 12222 23344578999999999888887642 1111111
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC--H
Q 045024 504 SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN--A 581 (1173)
Q Consensus 504 ~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~--~ 581 (1173)
..-.+..+|.+....|+..++.+..+-++++....|+-+. ..-...-+-.++...|+ .
T Consensus 484 -----------------~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v---qLws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 484 -----------------TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV---QLWSSSILTDLYQALGEKGN 543 (629)
T ss_pred -----------------HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH---HHHHHHHHHHHHHHhCcchh
Confidence 1235578899999999999999999999888777665322 21122234445556666 4
Q ss_pred HHHHHHHH
Q 045024 582 LDAVRECE 589 (1173)
Q Consensus 582 ~eAi~~~~ 589 (1173)
++.-+.|.
T Consensus 544 ~~e~e~~~ 551 (629)
T KOG2300|consen 544 EMENEAFR 551 (629)
T ss_pred hHHHHHHH
Confidence 44444443
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.05 E-value=0.02 Score=63.36 Aligned_cols=294 Identities=15% Similarity=0.019 Sum_probs=183.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS-PHLWEALGLAYHRLG 174 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g 174 (1173)
-|.+..-.|+-..|.+.-.+.-++-..+ +-++..-+..-.-.|+++.|.+-|+.++.. |.. .-.+-.|-.--.+.|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcc
Confidence 3445556788888888888876544333 444555566777889999999999887642 321 111111222224689
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHhhcHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-AHYGLASGLLGLAKQCINLGAFRW 253 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~l~~~~~a~g~~~~ 253 (1173)
+.+.|+.+-+++-+..|.-+.++...-......|+++.|++..+......--... +....+..+.
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLt-------------- 234 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLT-------------- 234 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHH--------------
Confidence 9999999999999999998888888888888999999999988776543211111 1111111111
Q ss_pred HHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHH
Q 045024 254 GASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQR 333 (1173)
Q Consensus 254 A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 333 (1173)
.+|..... . +...|...-.+
T Consensus 235 -----AkA~s~ld------a-------------------------------------------------dp~~Ar~~A~~ 254 (531)
T COG3898 235 -----AKAMSLLD------A-------------------------------------------------DPASARDDALE 254 (531)
T ss_pred -----HHHHHHhc------C-------------------------------------------------ChHHHHHHHHH
Confidence 11111100 0 01246677778
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH-HHHH---HHHH
Q 045024 334 ALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG-LKQH---ALIR 409 (1173)
Q Consensus 334 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~-~a~~---a~~k 409 (1173)
++++.|+....-.--+..+++.|+..++...++ .+.+.+|. ++++...- ....+ .+.. -..+
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE-----------~aWK~ePH-P~ia~lY~--~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILE-----------TAWKAEPH-PDIALLYV--RARSGDTALDRLKRAKK 320 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHH-----------HHHhcCCC-hHHHHHHH--HhcCCCcHHHHHHHHHH
Confidence 889999988888888888888888888755444 34444443 22222111 11111 1121 2334
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH-hcCCHHHHHHHHHHHHhc
Q 045024 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA-SESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 410 al~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~-~~g~~~eA~~~~~~al~~ 482 (1173)
...+.|++.+....++..-+.-|++..|...-+.+....|... .+.+++.+-. ..||-.+....+.+++.-
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4466788888888888888888888888888888888888752 2333454544 348888888887777764
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=6.1e-05 Score=75.19 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV-----SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~-----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
.-|.-++. .|+|++|..-|..|+++.|..+. .+...|.+.++++.++.|+..+.++++++|.+..++.+.+.+|
T Consensus 100 ~EGN~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 100 KEGNELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 34555555 56666666666666666554432 1333444444444444444444444444444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.++..|++|+..|++++..+|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 44444444444444444444443
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0013 Score=69.23 Aligned_cols=198 Identities=15% Similarity=0.086 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHH-H-hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAA-K-LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al-~-~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
+...++...-.-++ .++-+..+.+.+ . ....+......-|.++.+ .|++++|++...+. .+.++...-..+
T Consensus 74 Avr~~a~~~~~e~~-~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~-~~~~deAl~~~~~~-----~~lE~~Al~VqI 146 (299)
T KOG3081|consen 74 AVRLLAEYLELESN-KKSILASLYELVADSTDGSNLIDLLLAAIIYMH-DGDFDEALKALHLG-----ENLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHhhCcch-hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc-CCChHHHHHHHhcc-----chHHHHHHHHHH
Confidence 34444444433333 455555444443 2 233344566667788889 99999999887763 445666666788
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045024 102 LEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 177 (1173)
+.+..+.+-|...++++.+.+.+. .+..+|..+.. .+.+.+|.-+|++.-+..|..+......+.+.+.+|+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 889999999999999998877654 33334444433 356889999999998878888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHHhhcCCCHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE-QFQLALKISSENVSA 230 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a 230 (1173)
+|...++.++..++++++++.++..+-...|...++.+ .+.+....+|+++..
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999998877765 455666677887654
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.00011 Score=78.26 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=50.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLG 133 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la 133 (1173)
.|..+.-++. .|+|..|...|..-++..|+.. .+++.||.+++.+|++++|...|..+.+..|++ +++++.+|
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4445555555 5555555555555555555442 335555555555555555555555554444432 34455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
.+...+|+.++|-..|+++++..|+...
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555555555555555555555554443
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.98 E-value=0.00018 Score=69.55 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI---FPLLE 199 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~ 199 (1173)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.|++++|+..+++.++++|.++ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4445556666666666666666666666655532 44556666666666666666666666666666542 45556
Q ss_pred HHHHHHHcCC---------------hHHHHHHHHHHHhhcCCCHHH
Q 045024 200 SGNIFLMLGN---------------FRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 200 la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a 230 (1173)
.|.+++.+.. ..+|...|++++...|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6666665554 678999999999999987643
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.98 E-value=0.00014 Score=70.33 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRR 131 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 131 (1173)
..++.-|...+. .|+|++|++.|+......|... .+.+.++.+|+..|++++|+..+++.++++|++ ..+++.
T Consensus 11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 344444444444 5555555555555444444322 234444455555555555555555555554443 234444
Q ss_pred HHHHHHHcC
Q 045024 132 LGYLQLHHK 140 (1173)
Q Consensus 132 la~~~~~~g 140 (1173)
.|.+++.+.
T Consensus 90 ~gL~~~~~~ 98 (142)
T PF13512_consen 90 RGLSYYEQD 98 (142)
T ss_pred HHHHHHHHh
Confidence 444444433
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.96 E-value=0.0052 Score=67.74 Aligned_cols=168 Identities=16% Similarity=0.037 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
+-++..-+..-.-.|+ ++.|.+-|+.++. +|+.- --+..+=.-... .|+.+.|+.+-+++-+..|.-+.++...-.
T Consensus 120 pLIhlLeAQaal~eG~-~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr-~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 120 PLIHLLEAQAALLEGD-YEDARKKFEAMLD-DPETRLLGLRGLYLEAQR-LGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHHHHhcCc-hHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh-cccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3444444555555555 6777777766553 33211 111111112223 566667777777776666666666666666
Q ss_pred HHHHCCCHHHHHHHHHHHHhh---CCCc---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 101 LLEHGGKESLEVVVCREASDK---SPRA---FWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~---~p~~---~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
.....|+++.|++..+..... .++. ..+-..-+... .-.-+...|...-.+++++.|+...+-..-+..+++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d 276 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence 666667777766666544221 1111 01111111111 1123355555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 045024 174 GMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~ 192 (1173)
|+..++-..++.+.+..|.
T Consensus 277 ~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 277 GNLRKGSKILETAWKAEPH 295 (531)
T ss_pred cchhhhhhHHHHHHhcCCC
Confidence 5555555555555555443
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.93 E-value=0.013 Score=70.36 Aligned_cols=179 Identities=13% Similarity=0.021 Sum_probs=124.4
Q ss_pred HHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc--hHHHHHH------HHHHHHh--CCCChHHHHH
Q 045024 440 AFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL--AEFQIGL------AKLAKLS--GHLSSSQVFG 509 (1173)
Q Consensus 440 ~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~l------a~l~~~~--g~~~~~~A~~ 509 (1173)
.|.-++++-|......+. ...-.||-+.+++.+.++.+.... +-....+ .....-. .....+.+..
T Consensus 179 ~f~L~lSlLPp~~~kll~----~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLPPKVLKLLS----FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCCHHHHHHHh----hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 555566666654333333 333467888888888777663221 1111111 0111111 3444578999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 510 AIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 510 ~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
.++...+..|+....++..|.++...|+.++|++.|++++......+ .-....++.++.++.-+++|++|...|.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 99999999999999999999999999999999999998863212111 1223478899999999999999999999
Q ss_pred HHHHcCCCCHHHH-HHHHHHHHHcCCh-------HHHHHHHHHHhh
Q 045024 590 SLERQGMLDAEVL-QVYAFSLWQLGKY-------DLALSMARNLAS 627 (1173)
Q Consensus 590 ~~~~~~p~~~~~~-~~la~a~~~~g~~-------~eA~~~~~~aL~ 627 (1173)
++.+.+.-+...+ +..|.++...|+. ++|.+.|+++-.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9998776655544 6678888999999 777777776644
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.92 E-value=1.7e-05 Score=69.95 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
|+-..++..+|.++...|++++|+.+|++++++.+..++ ..+..+.++.++|.++...|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678899999999999999999999999998655543 13456889999999999999999999999998754
No 207
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0024 Score=67.28 Aligned_cols=220 Identities=13% Similarity=0.042 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--PDDSVSGEA 97 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--p~~~~a~~~ 97 (1173)
......+.+.+.|...|. +..-+...... ......+...++.+... -++.++-+....+-+... ..+......
T Consensus 39 ~~~e~d~y~~raylAlg~-~~~~~~eI~~~---~~~~lqAvr~~a~~~~~-e~~~~~~~~~l~E~~a~~~~~sn~i~~l~ 113 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQ-YQIVISEIKEG---KATPLQAVRLLAEYLEL-ESNKKSILASLYELVADSTDGSNLIDLLL 113 (299)
T ss_pred chhHHHHHHHHHHHHccc-ccccccccccc---cCChHHHHHHHHHHhhC-cchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 567777888888888887 55444433322 22234455666666666 666666665555544332 233345666
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----L 173 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~ 173 (1173)
-|.++...|++++|+...... .+.++...-..++.+..+.+-|...++++.+++.+ ..+..||..+.+ .
T Consensus 114 aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGG 186 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccc
Confidence 678899999999999988763 34456666678888999999999999999988653 345556666655 3
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcH
Q 045024 174 GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAF 251 (1173)
Q Consensus 174 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~ 251 (1173)
+.+.+|.-+|+..-+..|..+..+...+.+.+.+|++++|...++.++..++++++...++..+-...|.......++
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 578999999999998888889999999999999999999999999999999999999999888887777754444333
No 208
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.90 E-value=0.073 Score=64.57 Aligned_cols=450 Identities=13% Similarity=0.027 Sum_probs=255.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCChHHHHHH
Q 045024 140 KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL---MLGNFRKGVEQ 216 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~ 216 (1173)
+.-++-+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344555666666677777777788888888888888888777777777777777777765443322 23666677778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchh
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWA 296 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 296 (1173)
|++++.- -..+..|...+......+......++++.....+++|+........ .-+.+|...-.+....
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t---~G~~~we~~~E~e~~~------- 241 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT---EGAAIWEMYREFEVTY------- 241 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc---ccHHHHHHHHHHHHHH-------
Confidence 8887753 3445566666666666666656667777777778888776544333 1122222222222111
Q ss_pred hhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHH
Q 045024 297 EERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMA 376 (1173)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~ 376 (1173)
.+-...++-+..+...+... -+.++...--.-......++.....
T Consensus 242 ----------------------l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~------------ 286 (881)
T KOG0128|consen 242 ----------------------LCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKK------------ 286 (881)
T ss_pred ----------------------HHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhcc------------
Confidence 11111233445555555543 2222111000000000001100000
Q ss_pred HHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHH
Q 045024 377 LGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWA 456 (1173)
Q Consensus 377 ~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~ 456 (1173)
+ -..+.+.......|++.++..|.-..-|..+.+.-...|++-.-...++++....+.+...|+
T Consensus 287 -------~---------~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi 350 (881)
T KOG0128|consen 287 -------L---------DDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWI 350 (881)
T ss_pred -------H---------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHh
Confidence 0 000111122223456666666666777888888888889988888899999988888888998
Q ss_pred HhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 045024 457 GMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA-- 534 (1173)
Q Consensus 457 ~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~-- 534 (1173)
.+....-...+-.+.+...+.+++...|-.......+.+....++-....-...+.+.+.. ..-+......+.+
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~rr~~ 426 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAYRRRC 426 (881)
T ss_pred hhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 8655444456666667777778888877655555555555444443222222222222221 1111222222221
Q ss_pred -----cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCHH-HHHHHHH
Q 045024 535 -----RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR-AGNALDAVRECESLERQGMLDAE-VLQVYAF 607 (1173)
Q Consensus 535 -----~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~-~g~~~eAi~~~~~~~~~~p~~~~-~~~~la~ 607 (1173)
..+++.=.+.|+.|...+...-+.. ......++...|+++.. +++.+.|..+.+.+...+-.+.. .|+....
T Consensus 427 ~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~-~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~ 505 (881)
T KOG0128|consen 427 TNIIDSQDYSSLRAAFNHAWEELTELYGDQ-LDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAIN 505 (881)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHh
Confidence 2345555667777765554432221 12223455556666654 57899999999998877777766 7888888
Q ss_pred HHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhh
Q 045024 608 SLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTI 658 (1173)
Q Consensus 608 a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~ 658 (1173)
.-...|+...++.+++.++..... .+..-.++..+-+..-..|..+...
T Consensus 506 lE~~~g~~~~~R~~~R~ay~~~~~--~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 506 LEREYGDGPSARKVLRKAYSQVVD--PEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred HHHHhCCchhHHHHHHHHHhcCcC--chhHHHHHHHHHHHHhccccHHHHh
Confidence 888889999999999999874331 1122244444444444444444433
No 209
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.80 E-value=0.15 Score=60.21 Aligned_cols=414 Identities=12% Similarity=-0.001 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY-HRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 186 (1173)
.+.+...|...+...|.-...|...|..-.+.|..+.+.++|++++..-|.....|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 356666777778888888888888888888889999999999998888887777776544333 3567777878888888
Q ss_pred HHhCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 187 IELDDTS---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 187 l~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
......+ ...|-.+...-..++++..-...|++.++..-..-..++..-.-+..... ..-+...+++..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~--------~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE--------EKILLSIDELIQ 212 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC--------hhhhcCHHHHHH
Confidence 8776543 44555666666777888888888888887632222111111000000000 000000111111
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
........ ..... .+ ....................+++.....+...+.
T Consensus 213 l~~~~~~~---------------~~~~~----~~-------~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~----- 261 (577)
T KOG1258|consen 213 LRSDVAER---------------SKITH----SQ-------EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH----- 261 (577)
T ss_pred HhhhHHhh---------------hhccc----cc-------ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH-----
Confidence 11100000 00000 00 0000000000000000000111111111111000
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHH--------hcCC
Q 045024 344 IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGL--------QLDV 415 (1173)
Q Consensus 344 ~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal--------~l~p 415 (1173)
+++++.... ....+-.|+..+ .+++
T Consensus 262 -----------------------------~~~~~~s~~------------------~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 262 -----------------------------EKVYQKSEE------------------EEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred -----------------------------HHHHHhhHh------------------HHHHHHhhhhhccccccccCcccH
Confidence 000000000 000011122222 2334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC--chHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILP--LAEFQIGLA 493 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~la 493 (1173)
.+-..|....+.-...|+++...-.|++++---......|+.+ +.-....|+.+-|...+.++.++.- .+...+..+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky-~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKY-ARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHH-HHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4557788888888999999999999999998877888899984 4455567999999988888888733 455666667
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLAR 573 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~ 573 (1173)
.+....|+ .+.|...++...+..|+...+-.....+..+.|+.+.+... ........ ++.....-....+.+.++
T Consensus 374 ~f~e~~~n--~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~-~~l~s~~~--~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 374 RFEESNGN--FDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYK-NELYSSIY--EGKENNGILEKLYVKFAR 448 (577)
T ss_pred HHHHhhcc--HHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHH-HHHHHHhc--ccccCcchhHHHHHHHHH
Confidence 77777777 56899999999998899999888888999999999999852 22211111 111112233445566666
Q ss_pred HHHh-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 045024 574 SLSR-AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLG 613 (1173)
Q Consensus 574 ~~~~-~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g 613 (1173)
.... .++.+.|...+.++.+..|.+...+..+.......+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5443 578999999999999999999887766666555544
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.78 E-value=0.0003 Score=80.48 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=58.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL---WEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
.+|+++.+++++|.+++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788888888888888888888888888888888888754 888888888888888888888888886
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0011 Score=69.31 Aligned_cols=186 Identities=8% Similarity=0.047 Sum_probs=128.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
..+.+....|+ ..+.+.-+...... -..+...... ....+..++.+++-+ ..+.+.++.++.-.|
T Consensus 127 lhAe~~~~lgn-pqesLdRl~~L~~~-------V~~ii~~~e~-~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~k 191 (366)
T KOG2796|consen 127 LHAELQQYLGN-PQESLDRLHKLKTV-------VSKILANLEQ-GLAEESSIRLWRKRL------GRVMYSMANCLLGMK 191 (366)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHH-------HHHHHHHHHh-ccchhhHHHHHHHHH------HHHHHHHHHHHhcch
Confidence 34555555565 55555544443211 1112222222 233355666666644 346677777777888
Q ss_pred CHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHH
Q 045024 107 KESLEVVVCREASDKS-PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG----Y--PTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.|.-.+..+.++++.+ |.++.....+|.+.++.||.+.|..+|+++-+. + ..+..+..+.+.+|.-.+++..|
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 8888888888888877 456777778888888888888888888854432 2 23455667778888888888888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
...|.+++..+|.++.+..+.|.+..-.|+...|++..+.+++..|..
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888888888888888888888888888888888888888888864
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00092 Score=62.28 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS----VSGEALCELL 102 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~----~a~~~La~~~ 102 (1173)
..|..+.+.|+ .+.|++.|.+++.+.|..+.+|.+.++.+.- +|+.++|+..+++++++..... .++...|.+|
T Consensus 48 l~~valaE~g~-Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 48 LKAIALAEAGD-LDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHhccc-hHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34555545554 6777777777777777777777777777777 7777777777777776643322 2356666667
Q ss_pred HHCCCHHHHHHHHHHHHhhC
Q 045024 103 EHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~ 122 (1173)
...|+-+.|...|+.+.++.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 77777777777666665543
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.74 E-value=0.00012 Score=83.64 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVA---FRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
+|+++.+++++|..|+..|+ |++|+..|+++++++|+++++ |+++|.+|.. +|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 45555555555555555554 555555555555555555533 5555555555 55555555555555554
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0062 Score=63.77 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD------DTSIFPLL 198 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~ 198 (1173)
..+.+.+..++.-.|+|.-.+..+.+.++.+ |.++.....+|.+.++.||.+.|..+|+++-+.. .....+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3567788899999999999999999999988 5788899999999999999999999999654432 22455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+.+.+|.-.+++..|...|.+++..+|.++.+..+.+.+++-+|+...+.+..+.+...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999999999999999999999999999999999999999998888887654
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.72 E-value=0.0013 Score=61.24 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIF 204 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~ 204 (1173)
+-..|......|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+..+++++++..+. ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34456677777888888888888888888888888888888888888888888888888875443 35667788888
Q ss_pred HHcCChHHHHHHHHHHHhhcCC
Q 045024 205 LMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 8888888888888887776543
No 216
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.71 E-value=0.3 Score=61.11 Aligned_cols=483 Identities=15% Similarity=0.059 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCC--c----HHHHHHHHHHHHHcCCHH
Q 045024 75 QRAIKCYQRAVSLSPDD----SVSGEALCELLE-HGGKESLEVVVCREASDKSPR--A----FWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~----~~a~~~La~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~ 143 (1173)
.-|+.+++-+++..+-. ..+++.+|.++. ...++++|..++++++.+..+ . ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44777888877532222 345889999986 889999999999999777643 2 234556788888888777
Q ss_pred HHHHHHHHHHHhCCC---CHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCChHH----HHHHHHHHHHcCChH
Q 045024 144 EAVQSLQHAIRGYPT---SPH-LWEAL--GLAYHRLGMFSAAIKSYGRAIELD--DTSIFP----LLESGNIFLMLGNFR 211 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a----~~~la~~~~~~g~~~ 211 (1173)
|...+++.++...+ ... ..+.+ ...+...+++..|++.++...... +.++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999876543 222 22222 233333489999999999988875 344332 334466677778888
Q ss_pred HHHHHHHHHHhhc------CCC----HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 045024 212 KGVEQFQLALKIS------SEN----VSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKL 281 (1173)
Q Consensus 212 ~A~~~~~~al~~~------p~~----~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~ 281 (1173)
++++..+++.... |+. ..++..+..+. .....|++..+...+.+.-..+....... ... .|..
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~-----~~l~~~~~~~~~~~L~~lq~~~~~~~~~~-~w~-~~~~ 269 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLC-----CSLQQGDVKNSKQKLKQLQQFLDEIKKSP-SWP-SWDE 269 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHHHHHhhcCc-cCC-CcCC
Confidence 8888888774421 221 11222222222 22334555555555554444443332221 000 0000
Q ss_pred hchHHHHH----------hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 045024 282 HGDIQLTY----------AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAIT 351 (1173)
Q Consensus 282 ~g~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~ 351 (1173)
-|.+.... ...+.|.+. +.+ ..-++.--+..
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~--------~~l-------------------------------~~L~y~lS~l~ 310 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPK--------EEL-------------------------------YALVYFLSGLH 310 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCH--------HHH-------------------------------HHHHHHHHHHH
Confidence 00000000 000000000 000 00011112222
Q ss_pred HHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCC-HHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 045024 352 SDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDN-CQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGE 430 (1173)
Q Consensus 352 ~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~-~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~ 430 (1173)
....+..+++.+. ++.+.+..++.....|.. ......+ .......+.+ .....+..+....-
T Consensus 311 ~~~~~~~~ks~k~----~~k~l~~i~~~~~~~~~~~~~sl~~~--------~~~~~~~~~l-----~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 311 NLYKGSMDKSEKF----LEKALKQIEKLKIKSPSAPSESLSEA--------SERIQWLRYL-----QCYLLFYQIWCNFI 373 (608)
T ss_pred HhhccCchHHHHH----HHHHHHHHHHhhccCCCCCCcCHHHH--------HHhHHHHHHH-----HHHHHHHHHHHHHH
Confidence 2233333333222 223333333333111111 0000000 0000011111 23466778888999
Q ss_pred cCCHHHHHHHHHHHHhhC---CC------ChhHHHHhHHHHHHhcCCHHHHHHHHH--------HHHhcCCchHHHH---
Q 045024 431 VGEKKLARQAFDSARSID---PS------LALPWAGMSADVQASESLVDDAFESCL--------RAVQILPLAEFQI--- 490 (1173)
Q Consensus 431 ~g~~e~A~~~f~~al~~~---P~------~~~a~~~l~a~~~~~~g~~~eA~~~~~--------~al~~~p~~~~~~--- 490 (1173)
.+++..|....+.+.... |. .+..++- .|..+...|+.+.|...|. .+....+..+...
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL-~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYL-LGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHH-HHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 999999999998877653 22 1223333 5657778999999999998 4445555544322
Q ss_pred -HHHHHHHHhCCCChHH--HHHHHHHH---HHhCCC--CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHh-hcCCCCC
Q 045024 491 -GLAKLAKLSGHLSSSQ--VFGAIQQA---IQRGPH--YPESHNLYGLVCE--ARSDYQAAVVSYRLARYAI-SSSSGTV 559 (1173)
Q Consensus 491 -~la~l~~~~g~~~~~~--A~~~l~~a---l~~~P~--~~~a~~~lg~i~~--~~g~~~~A~~~~~kAl~l~-~~~pe~~ 559 (1173)
.+..+....+.-...+ ....+++. ....|+ ...++..+-..+. ..-...++...+..+++.. +....
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n-- 530 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN-- 530 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc--
Confidence 2233333333322112 22222222 112222 1122222222222 2223458888888888776 32211
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCHH-HH-----HHHHHHHHHcCChHHHHHHHHHHh
Q 045024 560 PNSHFQDISINLARSLSRAGNALDAVRECESLERQG---MLDAE-VL-----QVYAFSLWQLGKYDLALSMARNLA 626 (1173)
Q Consensus 560 ~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~---p~~~~-~~-----~~la~a~~~~g~~~eA~~~~~~aL 626 (1173)
..-...++.-++..+. .|+..+.......+.... |+... .| -.+...+...|+.++|....++.-
T Consensus 531 -~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 531 -SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred -chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2223345555666666 778777666666654432 22232 33 235566888899999988877653
No 217
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0041 Score=64.10 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C-CC-hhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSID----P-SL-ALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIG 491 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~----P-~~-~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 491 (1173)
.+.+..-|.+|.-.+++..|=..|.++.+.. . ++ ...+.. .+.+| +.+++++|+..+++++++.. .
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve-A~~cy-kk~~~~eAv~cL~~aieIyt------~ 105 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE-AANCY-KKVDPEEAVNCLEKAIEIYT------D 105 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHh-hccChHHHHHHHHHHHHHHH------h
Confidence 4556667777777777887777777776542 1 11 222333 44444 55577777777777766532 1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHH
Q 045024 492 LAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR-SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISIN 570 (1173)
Q Consensus 492 la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~-g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~ 570 (1173)
++.+. .-...+..+|.+|+.. .++++|+.+|+++-+..... .....-...+..
T Consensus 106 ~Grf~-----------------------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lK 159 (288)
T KOG1586|consen 106 MGRFT-----------------------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLK 159 (288)
T ss_pred hhHHH-----------------------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHH
Confidence 11111 1122456789999876 89999999999997665442 112233456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHhhhccccccc
Q 045024 571 LARSLSRAGNALDAVRECESLERQGMLDAE-------VLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQS 635 (1173)
Q Consensus 571 La~~~~~~g~~~eAi~~~~~~~~~~p~~~~-------~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~ 635 (1173)
.+..-...++|.+|+..|+++.....+++. -++.-|.+++-.++.-.+...+++-.+.+|...+.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 888888999999999999999877666533 23556777777788777777777777777755433
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.69 E-value=0.0017 Score=64.82 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
++.|.+.++.....+|.+.+.++.-|.++..+++. ....++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~m-------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKM-------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHH--------------------------------
Confidence 67888899999999999999999999988887771 000111111
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAW 369 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~ 369 (1173)
+++|+.-|++++.++|+..+++..+|.+|...+.+..........+
T Consensus 51 ----------------------------------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 51 ----------------------------------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp ----------------------------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 3468888999999999999999999999998887655444444555
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 370 HVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 370 ~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
+.|...++++...+|++..+...|.
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6666666777777777665444443
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.68 E-value=0.0027 Score=72.67 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTSPHLWEALGLA 169 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~ 169 (1173)
.+...+|.+..+.|+.++|++.++.+++..|. +..+..++..++...+.|.++...+.+.-++ -|+.+...+..+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 34677888889999999999999999887775 4567888899999999999998888886433 24555544444443
Q ss_pred HHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHHHH------HHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 170 YHR-LGM---------------FSAAIKSYGRAIELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 170 ~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
-.+ .++ -..|++.+.+|++.+|.-+..+..+ -.-+.+.|+ .||+.+---.+..-...
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 322 111 2346788999999999876655432 123455665 78888777767665555
Q ss_pred HHHHHHHHHH
Q 045024 228 VSAHYGLASG 237 (1173)
Q Consensus 228 ~~a~~~la~~ 237 (1173)
+.+...+..+
T Consensus 419 eGAL~lL~~t 428 (539)
T PF04184_consen 419 EGALNLLHCT 428 (539)
T ss_pred HhHHHHHHHH
Confidence 5555444333
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.62 E-value=0.21 Score=56.55 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 465 SESLVDDAFESCLRAVQIL-PLAEFQIGLAKLAK-LSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAV 542 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~-p~~~~~~~la~l~~-~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~ 542 (1173)
+..-.+.|..+|.++-+.. -..+.+..-+.+.. .+|+ ..-|...++--+...|+++..-...-..+.+.++-..|.
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d--~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD--RATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC--cchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHH
Confidence 4445677778887776654 23344444444332 2333 456888888888888988887777777788889999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
..|++++..++.. ....+|-.+...-..-|+...++..=+++.+..|..
T Consensus 487 aLFetsv~r~~~~-------q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 487 ALFETSVERLEKT-------QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhHHHHHHh-------hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 9999886554432 223366666666667788888877777776666654
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0051 Score=66.40 Aligned_cols=159 Identities=7% Similarity=-0.042 Sum_probs=130.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc---HHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK-SPRA---FWAFRRLGYLQL 137 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~-~p~~---~~a~~~la~~~~ 137 (1173)
.-+.+... .|++.+|-..+++.++-.|.+.-++..--.+++.+|+...-...+++++.. +|+. ....-.++..+.
T Consensus 108 ~~aai~~~-~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 108 AKAAILWG-RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhHHHhhc-cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 34455667 799999999999999999999988888888999999999999999999877 6665 344555677788
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 213 (1173)
..|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.-..-.. ...-|...+.++..-+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 9999999999999999999999999999999999999999999988764321111 122344567888888999999
Q ss_pred HHHHHHHH
Q 045024 214 VEQFQLAL 221 (1173)
Q Consensus 214 ~~~~~~al 221 (1173)
++.|++-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 99998755
No 222
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.58 E-value=0.0012 Score=65.89 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 176 FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN----------FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
++.|.+.++.....+|.+.+.+++-|.++..+.+ +++|+.-|++++.++|+...+++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 4455555555555566665555555555544422 4578888899999999999999999999999887
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDI 285 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~ 285 (1173)
-..+..+|..+|++|...+.+.....|........+...
T Consensus 85 -l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 -LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344567788888889888888888888877666554443
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.58 E-value=0.0051 Score=70.53 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=126.0
Q ss_pred HHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 045024 31 HLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL 110 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~ 110 (1173)
-.++..+ ++.-++.-.+|++++|+.+++|..++.-. .....+|.++|+++++...... .........|..-+
T Consensus 177 ~AWRERn-p~aRIkaA~eALei~pdCAdAYILLAEEe---A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~e 248 (539)
T PF04184_consen 177 KAWRERN-PQARIKAAKEALEINPDCADAYILLAEEE---ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFWE 248 (539)
T ss_pred HHHhcCC-HHHHHHHHHHHHHhhhhhhHHHhhccccc---ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchhh
Confidence 3345555 78888999999999999999998887532 3446888999999887543221 11111111121111
Q ss_pred HHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 111 EVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 111 A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
. ....+. ...+...+|.+..+.|+.++|++.++..++.+|. +..++.++..++...+.|.++...+.+.
T Consensus 249 ~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 249 A-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred h-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1 111111 2456678999999999999999999999998874 5678999999999999999999999886
Q ss_pred HHh-CCCChHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhhcCCCHHHH
Q 045024 187 IEL-DDTSIFPLLESGNIFLM-LGN---------------FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 187 l~~-~p~~~~a~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
-++ -|++....+..+.+..+ .|+ -..|++.+.++++.+|.-+...
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 433 24555554544443322 122 1347789999999998876543
No 224
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.023 Score=58.83 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=119.2
Q ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHCCCHH
Q 045024 36 SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDDSV-SGEALCELLEHGGKES 109 (1173)
Q Consensus 36 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-a~~~La~~~~~~g~~~ 109 (1173)
++.+++|.++|.++- ..|.. .++|+.|-..|.++-+.. ..+.. .+...+.+ ++.+++.
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~ykl-aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~ 90 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKL-AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPE 90 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHH-HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChH
Confidence 345888888887763 34444 555555555555554332 11122 23333333 4555888
Q ss_pred HHHHHHHHHHhhCCCcH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCH
Q 045024 110 LEVVVCREASDKSPRAF------WAFRRLGYLQLHH-KKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~------~a~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~ 176 (1173)
+|+.++++++++..+-. ..+..+|.+|... .++++|+.+|+++-+-.... -..+...+..-...++|
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888887755432 2345778888655 89999999999987654422 23455566677788999
Q ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 177 SAAIKSYGRAIELDDTSI-------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.+|+..|+++....-++. ...+.-|.+++-..+.-.+...+++..+.+|.....+
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 999999999887655443 2234567777777888888889999999999876543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.54 E-value=0.00024 Score=62.46 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
-..++..+|.+|..+|++++|+.+|++++++..........++.++..+|..+...|++++|+.++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999874333334456688888899999999999999999999998875
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.0028 Score=70.83 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
|..+.....+.+| .+.|..+|.++.+..+....+|...|.+-....++.+.|...|+++++..|.+...|......+..
T Consensus 4 ~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3344444444444 455555555555333334444544444433302333335555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 105 GGKESLEVVVCREASDKSPRAF---WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.|+.+.|..+|++++..-|... ..|......-...|+.+....+.+++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555554444332 23333444444444444444444444444443
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0021 Score=71.77 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH-GGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
+|..+.....+ .+..+.|...|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+.
T Consensus 3 v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556666666 6667777777777775555566667777777555 445555777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..|+.+.|..+|++++..-|... ..|......-.+.|+.+...+..+++.+..|+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77777777777777776655433 45666666666667777666666666666665
No 228
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.43 E-value=0.063 Score=62.26 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=90.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 115 CREASDKSPRAFWAFRRLGYLQ-LHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 115 ~~~al~~~p~~~~a~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
...+++..|.+.... .++..| ..+|+..+|..++..++-..|.. -.++..+|.++.+.|...+|--++..|+.-.|
T Consensus 202 ~~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 344455566554443 444444 45799999999999998877643 33677889999999999999999988888777
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.....++.++.++..+|++......|..+.+.+|......
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 7667788999999999999999999999999888765543
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.021 Score=59.48 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCC
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDD 91 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~ 91 (1173)
..+..-+..|...+ +|++|..++.++.+-..++ +.++-..|..... ...+.++..+|+++..+. |+.
T Consensus 32 s~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake-~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE-LSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 44444455554444 5999999999998654443 2344555666666 788999999999998763 333
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTS 159 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~ 159 (1173)
...-...+--....-++++|+..|++++.+-..+ .+.+...+.++.+...+++|-..+.+-... .|+.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 3333444444566778888888888886653321 345566777888888888887777664322 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCChHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD----DTSIFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
...+.....+|....+|..|..+++..-++. |++..+..+|-..| ..|+.++....+
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4455666666677778888888888866553 33455555554444 456666654443
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.013 Score=63.35 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=110.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTS---PHLWEALGLAY 170 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~~~~~la~~~ 170 (1173)
...-+.+....|+..+|...+++.++..|.+.-++..--.+++..|+...-...+++++.. +|+- ..+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677899999999999999999999999988889999999999999999999876 6655 44555677888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
...|-|++|.+.-+++++++|.+..+...++.++...|++.++.+...+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999987764
No 231
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0019 Score=66.86 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-----CCCCC----CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-----SGTVP----NSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-----pe~~~----~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
..++..-|+-+++.|+|.+|...|+.|+..+... |.+++ .......+.|.+.++...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999998755432 55554 34455678899999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 593 RQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 593 ~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
..+|.+..+++..|.+....=+.++|...|..+|+.+|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999999999998884
No 232
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.014 Score=61.39 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHH-HHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQ-RAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~-eA~~~~~~al 85 (1173)
|+..-+.++..+|.+-.+|..+-.++...+.+..+-++++.++++.+|++-..|...-.+... .|++. .-++..+.++
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHHHHHHH
Confidence 456666666666666666666666666655556666666777777777777776666666666 66666 5666666666
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCC
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HK-----KWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g-----~~~~A~~~l~~al~~~p~~ 159 (1173)
..+.++-.+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+... .| ..+.-+.+..+.+...|+|
T Consensus 141 ~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N 220 (318)
T KOG0530|consen 141 DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN 220 (318)
T ss_pred hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC
Confidence 66666666666666666666667777777777666665554444432221111 11 1233445555666666777
Q ss_pred HHHHHHHHHHHHH
Q 045024 160 PHLWEALGLAYHR 172 (1173)
Q Consensus 160 ~~~~~~la~~~~~ 172 (1173)
..+|..|.-++..
T Consensus 221 eSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 221 ESAWNYLKGLLEL 233 (318)
T ss_pred ccHHHHHHHHHHh
Confidence 7777666666654
No 233
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.043 Score=57.83 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=175.0
Q ss_pred HHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH-HH
Q 045024 33 WENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES-LE 111 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~-~A 111 (1173)
+.++..-..|+..-..++.++|.+-.+|...-.+......+..+-++++.++++-+|++-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34444468999999999999999999998888888774567888999999999999999999999888888899988 88
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR-LG-----MFSAAIKSYGR 185 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~ 185 (1173)
++..+.++..+..+.-+|...-.+...-+.|+.-+.+..+.++.+-.|-.+|...-.+... .| ..+.-+.+...
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887666666543222221 12 23445667778
Q ss_pred HHHhCCCChHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 186 AIELDDTSIFPLLESGNIFLM-LG--NFRKGVEQFQLAL-KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
.+...|++..+|..+.-++.. .| .+.+-........ ......|...-.+...+...+... ...+..+..+|
T Consensus 213 ~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~-----~~~~~~~a~~a 287 (318)
T KOG0530|consen 213 KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAY-----KSSAEELARKA 287 (318)
T ss_pred HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhc-----cccchHHHHHH
Confidence 889999999999999888876 44 2344444444444 333344555545555553322211 11112234456
Q ss_pred HHHHHHHh-hhcCChHHHHHH
Q 045024 262 CKVAEANT-RLAGNMSCIWKL 281 (1173)
Q Consensus 262 l~~~~~~~-~~~~~~~~~~~~ 281 (1173)
.+.+.... ...+-....|..
T Consensus 288 ~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 288 VKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHHHHHhhccCcHHHHHHHH
Confidence 66666655 455554445443
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.018 Score=62.10 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH-HHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFW-AFRRLGY 134 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~ 134 (1173)
..+.-+..+.-... .|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-........ .......
T Consensus 133 ~~e~~~~~~~~~~~-~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIE-AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhh-ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455566777778 899999999999999999999999999999999999999988887765332222211 1111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~ 212 (1173)
.+.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+-. +..+...+-.++...|.-+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 22232222222 2345566778999999999999999999999999998888877544 45566666666666665555
Q ss_pred HHHHHHH
Q 045024 213 GVEQFQL 219 (1173)
Q Consensus 213 A~~~~~~ 219 (1173)
+...|++
T Consensus 291 ~~~~~RR 297 (304)
T COG3118 291 LVLAYRR 297 (304)
T ss_pred HHHHHHH
Confidence 5444444
No 235
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.49 Score=64.11 Aligned_cols=368 Identities=13% Similarity=0.072 Sum_probs=200.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV----SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.++.+-++ .|.|.+|.-++++- ...+.... .+..+-.+|...++++.-....... ..+|. .........
T Consensus 1388 tLa~aSfr-c~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFR-CKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHH
Confidence 57777788 88889999888884 22222211 2444555888888888777666531 11222 334445566
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHHcCChHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG-NIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~~~~~~g~~~~A~~~ 216 (1173)
..|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++ .+-.+.++++.-..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 7889999999999999998888777777777777888888888877776665555555444443 334677777765555
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-------hhcCChHHHHHHhchHHHHH
Q 045024 217 FQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-------RLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 289 (1173)
.. ..+-++..+. .+|.++....+.. .+. +.+.++..+... .........|...-..+.-.
T Consensus 1541 l~---~~n~e~w~~~-~~g~~ll~~~~kD----~~~-----~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE-SIGKLLLRNKKKD----EIA-----TLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hh---cccccchhHH-HHHHHHHhhcccc----hhh-----HHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 43 2222222222 1344443322200 000 001111111000 00000000000000000000
Q ss_pred hhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 290 AKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL-YLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
-.....+.+ ...+++....
T Consensus 1608 -------------------------------------el~~~~~~l~~~s~~~~s~~----------------------- 1627 (2382)
T KOG0890|consen 1608 -------------------------------------ELENSIEELKKVSYDEDSAN----------------------- 1627 (2382)
T ss_pred -------------------------------------HHHHHHHHhhccCccccccc-----------------------
Confidence 000000000 1111100000
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHhhccc---HHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 369 WHVSEKMALGALLLEGDNCQFWVTLGCLSNYN---GLKQHALIRGL-------QLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 369 ~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~---~~a~~a~~kal-------~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
+.+.|.+....-.+. ..-+-++.+++ ..+..-.+.|...+.+-...|.++.|.
T Consensus 1628 -----------------~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1628 -----------------NSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred -----------------cchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 011111111111111 11111222222 123445678888888888899999998
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC-Cc--------h---------HHHHHHHHHHHHhC
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL-PL--------A---------EFQIGLAKLAKLSG 500 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~-p~--------~---------~~~~~la~l~~~~g 500 (1173)
.+.-.|.+..+ +.+... .+..++..|+...|+..+++.++.+ |+ | .+.+.++.+....+
T Consensus 1691 nall~A~e~r~--~~i~~E-~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~ 1767 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLE-RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG 1767 (2382)
T ss_pred HHHHhhhhccc--chHHHH-HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 88888877763 345555 6778888999999999888888651 11 1 13344556667778
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 501 HLSSSQVFGAIQQAIQRGPHYPESHNLYG 529 (1173)
Q Consensus 501 ~~~~~~A~~~l~~al~~~P~~~~a~~~lg 529 (1173)
+....+-+..|+.+.+..|.....++.+|
T Consensus 1768 n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1768 NFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred chhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 87778889999999999998777777777
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00056 Score=52.66 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
|.+|..+|.+|...|++++|++.|+++++.+|+++.+|..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 4689999999999999999999999999999999999987
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.25 E-value=0.75 Score=54.60 Aligned_cols=121 Identities=11% Similarity=-0.097 Sum_probs=87.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHH---HHHHHHHhc--CC--ch
Q 045024 414 DVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAF---ESCLRAVQI--LP--LA 486 (1173)
Q Consensus 414 ~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~---~~~~~al~~--~p--~~ 486 (1173)
.|..+.+...-+.+-...|++..|...+++..+.-|+...+-+..++ ...+.|+.+.+. +++.....- ++ .+
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~-~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~ 440 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKIN-WERRKGNLEDANYKNELYSSIYEGKENNGILE 440 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHh-HHHHhcchhhhhHHHHHHHHhcccccCcchhH
Confidence 46677788888888889999999999999999888998877776444 666889988888 444443332 22 22
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARS 536 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g 536 (1173)
......+.+.....+ +.+.|...+.++++..|.+...+..+..+....+
T Consensus 441 ~l~~~~~r~~~~i~~-d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 441 KLYVKFARLRYKIRE-DADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 344455555544433 2468888999999999999888877777666554
No 238
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.25 E-value=0.06 Score=62.38 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=69.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 045024 47 VIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS--VSGEALCELLEHGGKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 47 ~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~ 124 (1173)
..+++..|.+...+ .++..|++..|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..++...|.
T Consensus 203 ~~glq~~~~sw~lH-~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLH-NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHhhhcCchhHHHH-HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 34444455444333 3444444436777777777777766655432 23666777777777777776666666666665
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
-..-++.++.++...|++......|..+.+.+|...
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 555566677777777777777777777766666543
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.23 E-value=0.00063 Score=52.34 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
++..+|..|.. .|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45555555555 55555555555555555555555555544
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00076 Score=69.62 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
-|..++....|..|+..|.+++.++|..+..+.+.+.++++..+++.+.....++++++|+.+.+++.+|........|+
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45566667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 045024 212 KGVEQFQLALKI 223 (1173)
Q Consensus 212 ~A~~~~~~al~~ 223 (1173)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888888554
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00032 Score=50.44 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888875
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.13 E-value=0.74 Score=52.28 Aligned_cols=230 Identities=10% Similarity=-0.010 Sum_probs=141.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 406 ALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 406 a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
.+++++..-|-.+++|+.........++-+.|+..-+++....|. .... ++..|....+.++-...|++..+.-.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~-lse~yel~nd~e~v~~~fdk~~q~L~- 364 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMF-LSEYYELVNDEEAVYGCFDKCTQDLK- 364 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hhee-HHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence 478888888889999999999999999999999999998877776 2233 56577666777666667776554200
Q ss_pred hHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCC
Q 045024 486 AEFQIGLAKLAKL---SGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNS 562 (1173)
Q Consensus 486 ~~~~~~la~l~~~---~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~ 562 (1173)
..+..+..... .++..+.+ +..+.+......++...-..-.+..-.+.|..+|.++.+.- .. .
T Consensus 365 --r~ys~~~s~~~s~~D~N~e~~~-----Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~-~~------~ 430 (660)
T COG5107 365 --RKYSMGESESASKVDNNFEYSK-----ELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG-IV------G 430 (660)
T ss_pred --HHHhhhhhhhhccccCCccccH-----HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC-CC------C
Confidence 00111111101 11111111 11122222345556555565666677888999998885331 11 1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHH
Q 045024 563 HFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVS 642 (1173)
Q Consensus 563 ~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~ 642 (1173)
+..-++..... +...|++.-|-..|+--+...|+++.-....-.-+...|+-+.|...|++.++..... ....++-
T Consensus 431 h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~---q~k~iy~ 506 (660)
T COG5107 431 HHVYIYCAFIE-YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT---QLKRIYD 506 (660)
T ss_pred cceeeeHHHHH-HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHH
Confidence 11112222222 3467899999999999998999988766677777889999999999999887744311 1123333
Q ss_pred HHHHHHHHhcChhhhh
Q 045024 643 FICRLLYHISGLDSTI 658 (1173)
Q Consensus 643 ~la~l~~~~g~~~~A~ 658 (1173)
.+..--...|....+.
T Consensus 507 kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 507 KMIEYESMVGSLNNVY 522 (660)
T ss_pred HHHHHHHhhcchHHHH
Confidence 3334444456655554
No 243
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=1.3 Score=55.04 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 045024 324 AISSKSSYQRALYLAPWQANIYTDIAITSD 353 (1173)
Q Consensus 324 ~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 353 (1173)
+++-+..++.++.+...+...+..++.+|.
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0013 Score=68.04 Aligned_cols=82 Identities=26% Similarity=0.246 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
...|+.|+.+|.++|.++|..+..+...+.++++..+++.+.....+++++.|+...+.+.+|........|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HH
Q 045024 151 HA 152 (1173)
Q Consensus 151 ~a 152 (1173)
++
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 44
No 245
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.03 E-value=0.00079 Score=76.69 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.-+.-.+..++++.|+..|.++++++|+++..+.+.+..+.+.+++..|+..+.++++.+|....+++..|.+....+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.+|...|+......|+++.+...+..+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999988766554443
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.01 E-value=0.0011 Score=47.74 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
+.+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.051 Score=56.70 Aligned_cols=166 Identities=15% Similarity=0.103 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS------VSGEALCELLEHGGKESLEVVVCREASDK-----SPRAF 126 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~------~a~~~La~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 126 (1173)
..+..-+.+|.. .+++++|..++.++++-..++. .++...+.+......+.++..+++++... .|+..
T Consensus 32 s~yekAAvafRn-Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRN-AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 344455677788 9999999999999986544432 23666677778888999999999999765 34433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCh
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIEL------DDTSI 194 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 194 (1173)
..-...+--.....++++|++.|++++.+-..+ .+.+...++++.+...+++|-..+.+-... .++..
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 333344444567788999999999998764322 445667889999999999998888764432 23334
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
..+.....+|....+|..|...|+..-++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 455566666777789999999999877653
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.082 Score=60.27 Aligned_cols=171 Identities=10% Similarity=0.008 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHH-HHhhCCCcHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL----SPDDSVSGEALCELLEH---GGKESLEVVVCRE-ASDKSPRAFW 127 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~----~p~~~~a~~~La~~~~~---~g~~~~A~~~~~~-al~~~p~~~~ 127 (1173)
+++....+-.+|.. ..+|+.-++..+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 140 s~div~~lllSyRd-iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRD-IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhh-hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 35566777778999 99999998888887666 45566778889999988 8999999999999 4555667899
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh-
Q 045024 128 AFRRLGYLQLH---------HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI--------EL- 189 (1173)
Q Consensus 128 a~~~la~~~~~---------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~- 189 (1173)
.+..+|.+|-. ....++|+..|.++.+.+|+. ..=.+++.++...|.-.+.....++.. +.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 99999999853 235789999999999999753 333455556666665333332222221 11
Q ss_pred ---CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 190 ---DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 190 ---~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.-.+....-.++.+..-.|++++|++.++++++..|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 112445556778888889999999999999999876654
No 249
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.8 Score=53.84 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=126.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKL 495 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l 495 (1173)
+.|.+|..+|.+..+.|...+|++.|-++ +++..+.. ...+..+.|.|++-+.++.-+.+....+.....+...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~e-Vi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLE-VIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHH-HHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 46899999999999999999999999775 45556666 5667789999999999998887764444333333333
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 045024 496 AKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSL 575 (1173)
Q Consensus 496 ~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~ 575 (1173)
+...+++. .++..+. .|+.... ...|+-++..|.|+.|.-.|..+- -+..|+..+
T Consensus 1176 yAkt~rl~------elE~fi~-gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~vS-----------------N~a~La~TL 1230 (1666)
T KOG0985|consen 1176 YAKTNRLT------ELEEFIA-GPNVANI-QQVGDRCFEEKMYEAAKLLYSNVS-----------------NFAKLASTL 1230 (1666)
T ss_pred HHHhchHH------HHHHHhc-CCCchhH-HHHhHHHhhhhhhHHHHHHHHHhh-----------------hHHHHHHHH
Confidence 33344321 2233322 3554443 667888888999999999988551 366788888
Q ss_pred HhcCCHHHHHHHHHHHHHcC---------CC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 576 SRAGNALDAVRECESLERQG---------ML----------------DAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 576 ~~~g~~~eAi~~~~~~~~~~---------p~----------------~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
...|+|..|+...+++-... .+ +.+-+-.+..-|...|-++|-+..++.+|-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 89999999998887763221 00 1122234566677888888888888887663
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.94 E-value=0.0018 Score=46.54 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
+.+|+.+|.+|...|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 251
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0068 Score=62.84 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTS----------PHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
..++..-|+-++..|+|.+|...|+.++.. .|.. ...+.++..++...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677788888889999888888887642 3433 4567889999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
...|.+..+++..|.+....=+.++|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999987543
No 252
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.81 E-value=0.0016 Score=74.23 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.++++.|+..|.++++++|+....+-..+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.+|...|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 44444444455555554444444444444444444445555555555555555444445555555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 045024 151 HAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~ 169 (1173)
......|+++.+...+..+
T Consensus 97 ~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 97 KVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhhhcCcCcHHHHHHHHHH
Confidence 5555555554444444333
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.057 Score=58.44 Aligned_cols=160 Identities=18% Similarity=0.085 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH-HHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG-EALCE 100 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~-~~La~ 100 (1173)
.+.-+..+.-....++ +.+|...|..++...|++.++...++.+|.. .|+.+.|...+...-....+..... .....
T Consensus 134 ~e~~~~~~~~~~~~e~-~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAED-FGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccc-hhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4455666777777887 9999999999999999999999999999999 9999999988876422222211111 11223
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 178 (1173)
.+.+.....+. ..+++.+..+|++..+.+.++..+...|+.++|.+.+-..++.+- .+..+...+-.++...|.-+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333333322 234555677999999999999999999999999999998888754 345555666666655554444
Q ss_pred HHHHHH
Q 045024 179 AIKSYG 184 (1173)
Q Consensus 179 A~~~~~ 184 (1173)
+...++
T Consensus 291 ~~~~~R 296 (304)
T COG3118 291 LVLAYR 296 (304)
T ss_pred HHHHHH
Confidence 444343
No 254
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.74 E-value=0.0019 Score=46.45 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045024 511 IQQAIQRGPHYPESHNLYGLVCEARSDYQAAVV 543 (1173)
Q Consensus 511 l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~ 543 (1173)
|+++++.+|+++.+|+.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.026 Score=56.40 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcC--CCCCC-----------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 528 YGLVCEARSDYQAAVVSYRLARYAISSS--SGTVP-----------NSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 528 lg~i~~~~g~~~~A~~~~~kAl~l~~~~--pe~~~-----------~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
.|......|+.+.++..+++++.+.... ++... ...+..+...++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3555566677788888888777655433 11110 1223456666888889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 595 GMLDAEVLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 595 ~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+|.+..++..+..+|...|+..+|+..|++....
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988553
No 256
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.66 E-value=0.88 Score=56.11 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF----SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~----~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~ 115 (1173)
..|..+++.+.+ -.+..+.+.+|.+|..- ..|.+.|+.+|+.+.+. +
T Consensus 229 ~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~---------------------------~ 279 (552)
T KOG1550|consen 229 SEAFKYYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES---------------------------F 279 (552)
T ss_pred hHHHHHHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------------------------H
Confidence 345555555543 23455666666666550 23566666666666542 1
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 045024 116 REASDKSPRAFWAFRRLGYLQLHHK-----KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYGRAI 187 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~~g-----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al 187 (1173)
.++.... .+.+.+.+|.+|.+.. ++..|+.+|.++-.. +++.+.+.+|.++..-. ++..|.++|..+.
T Consensus 280 ~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 280 KKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 1111121 3445566666666532 566777777777655 34556666777776544 5667777777776
Q ss_pred HhCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhc
Q 045024 188 ELDDTSIFPLLESGNIFLML----GNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~ 224 (1173)
.. .+..+.+.++.+|..- -+...|..+|.++.+..
T Consensus 356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 53 4667777777776542 35677777887777765
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.25 Score=50.35 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFL 205 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~ 205 (1173)
..++..+...|++++|+..++.++....+. .-+-.+++.+...+|.+++|+..++..-. ++ ....-...|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 445555556666666666666555332211 22344556666666666666665554321 11 1122344566666
Q ss_pred HcCChHHHHHHHHHHHhhcCC
Q 045024 206 MLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..|+-++|+..|+++++..++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666665533
No 258
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.65 E-value=2 Score=49.87 Aligned_cols=95 Identities=8% Similarity=-0.057 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 459 SADVQASESLVDDAFESCLRAVQILPLA-EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSD 537 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~ 537 (1173)
....+.+.|-+.+|...|.+...+.|.. ..+.....+...+......-+...|+.++.....++..|...-..-...|.
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~ 545 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGR 545 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCC
Confidence 3445667888999999999888887743 455555555544333334567889999998888899999877777778999
Q ss_pred HHHHHHHHHHHHHHhh
Q 045024 538 YQAAVVSYRLARYAIS 553 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~ 553 (1173)
.+.+-.+|.+|++.++
T Consensus 546 ~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 546 PENCGQIYWRAMKTLQ 561 (568)
T ss_pred cccccHHHHHHHHhhC
Confidence 9999999999976654
No 259
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.64 E-value=2 Score=49.85 Aligned_cols=442 Identities=12% Similarity=0.028 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHh
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN-FRKGVEQFQLALK 222 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~ 222 (1173)
.-...|+.+....+.|+..|........+.+.+.+-...|.+++...|+++..|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345566677777777777777777766667767777777777777777777777777776666555 7777777777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHh-hccc-hhhhhh
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYA-KCFP-WAEERQ 300 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~~~~~~ 300 (1173)
.+|+++..|...-..-+.......+.. ............-...|....... .... ..+...
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr-----------------~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k 231 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRR-----------------EELGLDSSDKDEEIERGELAWINYANSVDIIKGAVK 231 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHH-----------------HHhccccchhHHHHHHHHHHHHhhccchhhhhcchh
Confidence 777777666543332222111000000 000000000000000000000000 0000 000000
Q ss_pred chhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hHHH---hhhhhh--hhhHHH
Q 045024 301 SLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIY---SLNE---AYGHYQ--SAWHVS 372 (1173)
Q Consensus 301 ~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g---~~~e---A~~~~~--~~~~~A 372 (1173)
..+ .+ ... .....+ +--...++......|.+|..|..++.-....- +... -..... ..-...
T Consensus 232 ~~e--~~---~~~---~~d~~k--el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~ 301 (568)
T KOG2396|consen 232 SVE--LS---VAE---KFDFLK--ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRC 301 (568)
T ss_pred hcc--hH---HHH---HHHHHH--HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHH
Confidence 000 00 000 000000 01112233334456777777777665433211 1000 000000 001112
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhhc----ccH-H---HHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 373 EKMALGALLLEGDNCQFWVTLGCLSN----YNG-L---KQHALIRGL---QLDVSLADAWAHIGKLYGEVGEKKLARQAF 441 (1173)
Q Consensus 373 ~k~~~~al~~~p~~~~~~~~Lg~~~~----~~~-~---a~~a~~kal---~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f 441 (1173)
..+++.++..-|.....-..++.+.. -.+ . -...++++. .+.+..+.-+..++.++.......++...+
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l 381 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKL 381 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHh
Confidence 23334444333332211011111110 111 0 111233333 345667777777787777776654443333
Q ss_pred H-HHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHH-Hh-C
Q 045024 442 D-SARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAI-QR-G 518 (1173)
Q Consensus 442 ~-~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al-~~-~ 518 (1173)
. .. -.++...|...+...-....+++--.......++..+..+....+.... .++.....-...+-.++ .. .
T Consensus 382 ~~e~---f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s~~~ 456 (568)
T KOG2396|consen 382 TTEL---FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS--EGDSLQEDTLDLIISALLSVIG 456 (568)
T ss_pred hHHH---hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh--hccchhHHHHHHHHHHHHHhcC
Confidence 2 33 3355566665333121122232222222222333333333333332222 22211111122222222 22 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARS---LSRAGNALDAVRECESLERQG 595 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~---~~~~g~~~eAi~~~~~~~~~~ 595 (1173)
|+....-..+-..+.+.|-+.+|...|.+.. ...|-+ ...+..+..+ ....| ...+.++|+.++...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~---~lpp~s------l~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQ---ELPPFS------LDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHH---hCCCcc------HHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 4444555566677888899999999998763 222211 1122222222 22223 778888999988765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 596 MLDAEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 596 p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+++.|..+-..-...|..+.+-..|.++++
T Consensus 527 g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 GADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 58888887777677788999988888888876
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.56 E-value=2.1 Score=49.04 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 572 ARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
|..+...|+|.++.-...=+.+..| ++.++..+|.+.+..++|++|..++..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456678999999866666677888 8899999999999999999999998865
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.55 E-value=0.0039 Score=44.80 Aligned_cols=32 Identities=41% Similarity=0.622 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
.+|+.+|.++.. +|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 455566666666 66666666666666666554
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.53 E-value=0.0054 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
.+++.+|.++.. .|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666 666666666666666665543
No 263
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.055 Score=54.02 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999999999999999998888754
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.51 E-value=0.32 Score=59.93 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccC-----
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWEN----SESKEKAAEHFVIAAKL-----NPQNAVAFRYLGHYYTRFSI----- 72 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~----~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~g----- 72 (1173)
|...++.+.+. .+..+.+.+|.+|+.- .+|.+.|+.+|..+.+. .-..+.+.+.+|.+|.+ ..
T Consensus 231 a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~-g~~~~~~ 307 (552)
T KOG1550|consen 231 AFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ-GLGVEKI 307 (552)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc-CCCCccc
Confidence 46666666543 4677888888888654 24589999999998761 11256688899999998 43
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHH
Q 045024 73 DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG---KESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEA 145 (1173)
Q Consensus 73 ~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A 145 (1173)
+++.|..+|.++-+.. ++.+.+.+|.++.... ++..|..+|..+... .+..+.+.++.+|.. ..+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 6788999999988764 5677788888886655 678999999998764 467788888888864 3588999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 045024 146 VQSLQHAIRGYPTSPHLWEALGLAYHRL-GMFSAAIKSYGRA 186 (1173)
Q Consensus 146 ~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 186 (1173)
..++.++.+.+ ++.+...++..+... ++++.+.-.+...
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 99999998887 444455555444332 6665555544433
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.48 E-value=1.4 Score=49.25 Aligned_cols=227 Identities=13% Similarity=-0.000 Sum_probs=142.7
Q ss_pred HHccCcHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHccC-CHHHHHHHHHHHHhh----CC---CCH----
Q 045024 33 WENSESKEKAAEHFVIAAKLN----PQN----AVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSL----SP---DDS---- 92 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~----p~~----~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~----~p---~~~---- 92 (1173)
+.+|+ ++.|..++.++-... |+. ...++..|..... .+ ++++|..+++++.++ .+ ..+
T Consensus 4 ~~~~~-~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGD-LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCC-HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 45666 899999998886543 332 3567888888888 88 999999999999887 21 111
Q ss_pred ---HHHHHHHHHHHHCCCHH---HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C--CHHHH
Q 045024 93 ---VSGEALCELLEHGGKES---LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-T--SPHLW 163 (1173)
Q Consensus 93 ---~a~~~La~~~~~~g~~~---~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~--~~~~~ 163 (1173)
.++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.+....++.+++.+.+.+++..-+ . +....
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 23777888888877654 555666666666788777776666666668999999999999987654 2 22222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH---HHHHHHcC--C------hHHHHHHHHHHHh--hcCCCH
Q 045024 164 EALGLAYHRLGMFSAAIKSYGRAIEL--DDTSIFPLLES---GNIFLMLG--N------FRKGVEQFQLALK--ISSENV 228 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l---a~~~~~~g--~------~~~A~~~~~~al~--~~p~~~ 228 (1173)
.....-+. ......|...+...+.. .|.... +... ..++...+ + .+...+.++.+.+ ..|-.+
T Consensus 162 l~~i~~l~-~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLA-EKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHH-hhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 22222222 34456677777776643 232211 2222 22222222 1 2222233332222 234455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 229 SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 229 ~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
.+...+-.++.+.|...+..++|..|...|+-++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 66666667788889999999999999999887663
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.47 E-value=1.5 Score=50.72 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 156 YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
.......+...+.+..+.|+++.|...+.++...++. .+.+.+..+.++...|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355678899999999999999999999998876522 467778889999999999999999998887
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.43 E-value=0.086 Score=63.39 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=101.2
Q ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHH------HHHHHHH--H--HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q 045024 71 SIDTQRAIKCYQRAVSLSP-DDSVSG------EALCELL--E--HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH 139 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p-~~~~a~------~~La~~~--~--~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 139 (1173)
.||-+.++..+.++.+... ..+.+- +.....+ . ...+.+.|.+.+....+..|+.....+..|+++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5888888888888776321 112221 1111111 1 244567788888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCh----
Q 045024 140 KKWSEAVQSLQHAIRGYPT----SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLMLGNF---- 210 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~---- 210 (1173)
|+.++|++.|++++..... ..-.++.++.++..+++|++|...|.+..+.+.-+ ....+..|-++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 8888888888877743221 23356678888888888888888888887755443 33445667778888887
Q ss_pred ---HHHHHHHHHHHh
Q 045024 211 ---RKGVEQFQLALK 222 (1173)
Q Consensus 211 ---~~A~~~~~~al~ 222 (1173)
++|.+.|.++-.
T Consensus 361 ~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 361 EHKKEAEELFRKVPK 375 (468)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666543
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.25 Score=56.40 Aligned_cols=173 Identities=13% Similarity=0.013 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--ccCCHHHHHHHHHHH-HhhCCCCHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKL----NPQNAVAFRYLGHYYTR--FSIDTQRAIKCYQRA-VSLSPDDSV 93 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~--~~g~~~eA~~~~~~a-l~~~p~~~~ 93 (1173)
+++....+-.+|....+ |+.-+...+..-.. -++.+.+.+.+|.++.+ ..|+.++|+..+..+ ....+.+++
T Consensus 140 s~div~~lllSyRdiqd-ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQD-YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhh-HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 45666777777877776 88888888776555 34455566666666554 268999999999994 455677889
Q ss_pred HHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-------h-
Q 045024 94 SGEALCELLEHG---------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI-R-------G- 155 (1173)
Q Consensus 94 a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al-~-------~- 155 (1173)
.+..+|.+|-.. ...++|+..|.++.+.+|+. ..-.+++.++...|...+....+++.. . .
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 999999988321 24789999999999999754 333455666666665433332222222 1 1
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 156 ---YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 156 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
.-.+......++.+..-.|++++|++.++++++..|....
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1244556677888889999999999999999999877553
No 269
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.41 E-value=0.71 Score=57.14 Aligned_cols=249 Identities=14% Similarity=0.059 Sum_probs=155.5
Q ss_pred HHHHHHHHhCCC-----CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHccCCH
Q 045024 9 LQLEDSLEANPD-----DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ--N-------AVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 9 ~~l~~al~~~P~-----~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~a~~~lg~~~~~~~g~~ 74 (1173)
..+...++.-|. +|..-...+.......+ +.+|...+.++...-|. . +...-..|.+... .|++
T Consensus 397 sll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r-~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~ 474 (894)
T COG2909 397 SLLLAWLKALPAELLASTPRLVLLQAWLLASQHR-LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDP 474 (894)
T ss_pred HHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccC-hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCH
Confidence 344444444443 45555666776766776 99999998888754333 1 3455567788888 9999
Q ss_pred HHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCH-
Q 045024 75 QRAIKCYQRAVSLSPDDSV-----SGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKW- 142 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~-----a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~- 142 (1173)
++|++..+.++..-|.+.. +...+|.+..-.|++++|..+...+.+.... ..++....+.+...+|+.
T Consensus 475 e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 475 EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988776543 4778888999999999999999888766322 234455667788888843
Q ss_pred -HHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--h-HHHHHHHHHHHHcCCh
Q 045024 143 -SEAVQSLQHAI----RGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL----DDTS--I-FPLLESGNIFLMLGNF 210 (1173)
Q Consensus 143 -~~A~~~l~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~a~~~la~~~~~~g~~ 210 (1173)
.+.+..+...- ...|.........+.++...-+++.+.......++. .|.. . -+...++.++...|+.
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 33333333222 223333333333333333333356665555555544 2332 2 2234789999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
++|...+.+............+..+.++...-......|+...+.....
T Consensus 635 ~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 635 DKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 9999999988775443322223345555544555556677666554443
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=7.5 Score=53.49 Aligned_cols=86 Identities=12% Similarity=-0.021 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--------CCCCCCCchHHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--------SGTVPNSHFQDISINLARSLSRAGNA--LDAVRECES 590 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--------pe~~~~~~~~~~~~~La~~~~~~g~~--~eAi~~~~~ 590 (1173)
-+.++...|..+...|+-..|+.++++.+.....+ |.+....-+..+...++.-....|++ ++-++.|..
T Consensus 1701 ~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~ 1780 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHD 1780 (2382)
T ss_pred cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 35566777888888888888888888776443222 11111112223455566666666663 456677888
Q ss_pred HHHcCCCCHHHHHHHH
Q 045024 591 LERQGMLDAEVLQVYA 606 (1173)
Q Consensus 591 ~~~~~p~~~~~~~~la 606 (1173)
+.+..|.....++.+|
T Consensus 1781 ~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1781 AKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHcccccCceeeHH
Confidence 8888887777766666
No 271
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.32 E-value=0.23 Score=56.71 Aligned_cols=80 Identities=16% Similarity=0.054 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 045024 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH---HKKWSEAVQSLQH 151 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~ 151 (1173)
+.-+..|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|...-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3455666777777777666666666666666666666666777777777666666544333222 1235555555555
Q ss_pred HHH
Q 045024 152 AIR 154 (1173)
Q Consensus 152 al~ 154 (1173)
+++
T Consensus 128 ~l~ 130 (321)
T PF08424_consen 128 CLR 130 (321)
T ss_pred HHH
Confidence 544
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.31 E-value=1.7 Score=50.33 Aligned_cols=151 Identities=13% Similarity=-0.000 Sum_probs=105.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP----TSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL-DDT----- 192 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----- 192 (1173)
......|...+.+..+.|.++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+.. ...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567788888999999999999999988887552 24667777888888999999999888887771 100
Q ss_pred ----------------------------ChHHHHHHHHHHHHc------CChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 193 ----------------------------SIFPLLESGNIFLML------GNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 193 ----------------------------~~~a~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
...++..+|...... +..+++...|.++.+.+|+...+++.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123455666666666 8888999999999999999999999888888
Q ss_pred HHHHHHHHHhhcH---HHHHHHHHHHHHHHHHHhhhcC
Q 045024 239 LGLAKQCINLGAF---RWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 239 ~~l~~~~~a~g~~---~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
...-........- .....+...|+..+-......+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 7765533321110 1233344555555555444333
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.073 Score=58.05 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT----SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
+..+..-|+-|++.++|..|+..|.+.++..-. +...|.+.+-+....|+|..|+....+++..+|.+..++++-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 344556788888888888888888888876433 3456778888888888888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+++.+.++++|....+..++++.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 88888888888888888877765443
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.25 E-value=1.3 Score=49.76 Aligned_cols=178 Identities=21% Similarity=0.162 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF---SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLE 111 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A 111 (1173)
+..|...+..+-. -.++.....++..|..- ..+..+|..+|+.+. ...++.+.+.+|.+|.. ..+..+|
T Consensus 57 ~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 57 YAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred HHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHH
Confidence 7888888888765 23347788888888761 346888999999554 45677888899999976 4489999
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 045024 112 VVVCREASDKSPRA-FWAFRRLGYLQLHHK-------KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAA 179 (1173)
Q Consensus 112 ~~~~~~al~~~p~~-~~a~~~la~~~~~~g-------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 179 (1173)
...|+++.+..... ..+.+.+|..|..-. +...|...|.++-... ++.+...+|.+|.. ..++.+|
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 99999998775443 344778888877642 2347888888887765 78888999988865 4589999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhcC
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLG---------------NFRKGVEQFQLALKISS 225 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p 225 (1173)
...|.++-+... ....+.++ ++...| +...|...+..+....+
T Consensus 211 ~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 211 FRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 999999998776 78888888 666666 55555666665554433
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.08 E-value=0.0094 Score=42.72 Aligned_cols=33 Identities=27% Similarity=0.604 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
.+|+.+|.+|...|++++|...|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=1.3 Score=45.24 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
+.....++....+|.+..+ ...++..+...|++++|+..++.++....+. ..+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333444444444444433 5677888899999999999999988654442 456778999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
......+ -.+......|.++...|+-++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653221 123345678999999999999999999999987544
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.88 E-value=0.64 Score=53.08 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---cCChHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM---LGNFRKGVEQFQL 219 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~ 219 (1173)
+.-+.+|++|++.+|++...+..+-....+..+.++..+.+++++..+|+++..|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4556677777777787777777777777777777777777888887777777776655444333 2345666666666
Q ss_pred HHhhc-----------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 220 ALKIS-----------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 220 al~~~-----------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
++..- +..+.....+..++.+........|..+.|+..++..+++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 66531 1223345566667777777777788888888777776664
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.80 E-value=4.3 Score=45.37 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHcCChHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHH
Q 045024 205 LMLGNFRKGVEQFQLALKIS-SENVSAHYGLASGLLGLAKQCINLG-AFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~l~~~~~a~g-~~~~A~~~l~~Al~~~~~ 267 (1173)
.+.|+++.|..++.++-... ..++.....++.++...|......+ +++.|...+++|.+++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 46899999999999988766 5667777889999999999999999 999999999999998755
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.77 E-value=3.5 Score=46.42 Aligned_cols=176 Identities=22% Similarity=0.156 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CCHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSE---SKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS----IDTQRAIK 79 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~----g~~~eA~~ 79 (1173)
|+..+..+-. -.++...+.++..|....+ +..+|..+|..+. ...++.+.+.+|.+|.. - .|..+|..
T Consensus 60 a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~-G~gv~~d~~~A~~ 134 (292)
T COG0790 60 ALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYAN-GRGVPLDLVKALK 134 (292)
T ss_pred HHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhc-CCCcccCHHHHHH
Confidence 3555555544 2334678888888865442 3688999999544 56678899999999987 3 28999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045024 80 CYQRAVSLSPDD-SVSGEALCELLEHGG-------KESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQ 147 (1173)
Q Consensus 80 ~~~~al~~~p~~-~~a~~~La~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~ 147 (1173)
+|+++.+..-.. ..+.+.++..|..-+ +...|...|.++-... ++.+...+|.+|.. ..++.+|..
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 999999875433 344788888886642 2347888898887665 67888899988865 458999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCC
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLG---------------MFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 192 (1173)
.|.++.+... ....+.++ ++...| +...|...+..+....+.
T Consensus 213 wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 213 WYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 9999998876 78888888 666666 666666666666555443
No 280
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.75 E-value=4.7 Score=52.06 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALGLAYHRL----G---MFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
...++...+.|++|+..|++.....|+. -++.+..|.....+ | .+++|+..|++.- -.|.-+--+...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 3466777889999999999999998864 45677777776543 3 4777888887743 3566777788999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
.+|.++|++++-++.|.-+++..|++|..-...-.+-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 9999999999999999999999999987654433333
No 281
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.75 E-value=0.0088 Score=65.35 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=84.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
+.-.+..|+++.|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+....+-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34455678899999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 045024 213 GVEQFQLALKISSE 226 (1173)
Q Consensus 213 A~~~~~~al~~~p~ 226 (1173)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887654
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.60 E-value=0.68 Score=53.54 Aligned_cols=143 Identities=15% Similarity=0.058 Sum_probs=104.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-----------CC---------CCCCCchHHHHHHH
Q 045024 512 QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS-----------SG---------TVPNSHFQDISINL 571 (1173)
Q Consensus 512 ~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~-----------pe---------~~~~~~~~~~~~~L 571 (1173)
-..++.+|-...++..++.++..+|+.+.|.+..++|+-.++.. +. ..++..+..+.+..
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 34568889999999999999999999999999999997655421 01 12256677788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Q 045024 572 ARSLSRAGNALDAVRECESLERQGML-DAEV-LQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLY 649 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~p~-~~~~-~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~ 649 (1173)
...+.+.|-+..|.+.++-++..+|. ||-+ ++.+-....+.++++-=++.++.........-...-|......|-.++
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 99999999999999999999999999 7664 444555566788898888888876552111101123445555666666
Q ss_pred HhcCh
Q 045024 650 HISGL 654 (1173)
Q Consensus 650 ~~g~~ 654 (1173)
..++.
T Consensus 190 ~l~~~ 194 (360)
T PF04910_consen 190 RLEKE 194 (360)
T ss_pred HhcCc
Confidence 66666
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=7.6 Score=46.72 Aligned_cols=184 Identities=18% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHccCCHHHHHHH
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY----------LGHYYTRFSIDTQRAIKC 80 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~----------lg~~~~~~~g~~~eA~~~ 80 (1173)
..+.++.+| ++..|..++.....+-. ++.|...|-+.-. .|. ...--. .+.+-.- -|++++|.+.
T Consensus 682 A~qfiEdnP-HprLWrllAe~Al~Kl~-l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~-~g~feeaek~ 756 (1189)
T KOG2041|consen 682 AIQFIEDNP-HPRLWRLLAEYALFKLA-LDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAF-YGEFEEAEKL 756 (1189)
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHh-hhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhh-hcchhHhhhh
Confidence 344455455 57788888887776665 7777777665421 111 111112 2333333 5777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 81 YQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 81 ~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
|-.+=+ .+ .-..++.+.|++-...+.++.--.-..+ --.++..+|..+..+..|++|.++|...-.
T Consensus 757 yld~dr---rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---- 824 (1189)
T KOG2041|consen 757 YLDADR---RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---- 824 (1189)
T ss_pred hhccch---hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 754321 11 1223445566666665555432211111 246788888888888888888888876421
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.-+...+++...+|++-. .....-|++...+-.+|.++...|.-++|++.|-+
T Consensus 825 ----~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 ----TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 123445555555555422 22333355555666666666666666666665543
No 284
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.019 Score=62.79 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=66.2
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
...|.+++|++.|..++.++|.....+...+.+++.+++...|+..+..++.++|+...-+-..|.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCC
Q 045024 183 YGRAIELDDT 192 (1173)
Q Consensus 183 ~~~al~~~p~ 192 (1173)
+..+.+++-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 7777776533
No 285
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.097 Score=57.15 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPR----AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
+-.-|.-|++..+|..|+..|.+.++..-. +...|.+.+-+.+..|+|..|+....+++..+|.+..+++.-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 444566666777777777777777665432 3556777788888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 045024 171 HRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
+.+.++.+|...++..++++..
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888887776544
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.12 E-value=0.035 Score=39.69 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
.+++.+|.+|.. .|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 345566666666 6666666666666666655
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.05 E-value=0.048 Score=50.28 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=70.6
Q ss_pred hhhhhhcccccccHHHHHHHHhhhcCCCc---eeehhcchhHHHHHHhhcCc----hhHHHHHHHHHHHHHhcCcccchH
Q 045024 1012 LGFVFLWKKDFFSAEKCLAQACSLAGAES---CLFLCHGTICMEIARQYHDS----HFLSLAVRSLTKAQKTSFVQLPVV 1084 (1173)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1173)
.|+.++++||...|=+-+.-.|+.++.+. .++..||.||+++|..--+| .||--+|.+++++..=|+.. +
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~---A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS---A 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH---H
Confidence 46788999999999999999999999998 78889999999999999988 48999999999998776655 2
Q ss_pred HHHHHhhhcCCCcHHHHHHhh
Q 045024 1085 SLLLAQAEGSLSSIEKWEKNL 1105 (1173)
Q Consensus 1085 ~~~~~~~~~~~~~~~~~~~~~ 1105 (1173)
..|.-=| .-+||..-.+|.+
T Consensus 79 ~~L~~la-~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 79 HSLFELA-SQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHH-HHhhhHHHHHHHH
Confidence 2222212 2345555455444
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.76 E-value=1.4 Score=46.72 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-----CCCHH-HHHHHHHHHHHCCC
Q 045024 38 SKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-----PDDSV-SGEALCELLEHGGK 107 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-----p~~~~-a~~~La~~~~~~g~ 107 (1173)
.+++|+..|++++++.|... .++-.+..++++ .|++++-+..|.+.+..- .+..+ ....+-..-....+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 48999999999999988764 477788899999 999999999888876421 11111 11111111112223
Q ss_pred HHHHHHHHHHH---HhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 045024 108 ESLEVVVCREA---SDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT------------SPHLWEALGLA 169 (1173)
Q Consensus 108 ~~~A~~~~~~a---l~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~~~~~la~~ 169 (1173)
.+.-...|+.. ++...++ ...-..+|.+|+..++|.+-...+++.-....+ -.+.+..-..+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 33333333322 2211111 122346899999999998888777776543221 13455555677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHH------HHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDTSIFPLL------ESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
|..+.+-.+-...|++++.+...-+..+. --|..+.+.|++++|-..|-.+++.....
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 88888888888899999887544332221 23566888999999999888888865443
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.72 E-value=0.053 Score=38.33 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
++++.+|.++.+.|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999999999999999998874
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.65 E-value=1 Score=52.11 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 50 AKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 50 l~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
++.+|-+.+++..++.++.. +|+...|.+..++|+
T Consensus 33 l~~~PyHidtLlqls~v~~~-~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQ-QGDHAQANDLLERAL 67 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 45678888888888888888 888888888888876
No 291
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.50 E-value=17 Score=45.09 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL---HHKKWSEAVQS 148 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~A~~~ 148 (1173)
|.-++=+..++.-+.+++.+......|..++...|++++-...-..+.+..|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344445566666666777777778888888888888887777777777777777777665444332 23667777888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHcCChHHHH
Q 045024 149 LQHAIRGYPTSPHLWEALGLAY-------HRLGMFSAAIKSYGRAIELDDT-------SIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 149 l~~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
|++++.-. +++..|...+... ...++++.-...|.+++..-.. ....+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88887532 3344444444333 4456778888888888764321 2344445555566555556777
Q ss_pred HHHHHHHhhc
Q 045024 215 EQFQLALKIS 224 (1173)
Q Consensus 215 ~~~~~al~~~ 224 (1173)
.++...+...
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 7777777653
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.37 E-value=0.062 Score=39.15 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
++.+||.+|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999996654
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.29 E-value=0.094 Score=38.21 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 045024 524 SHNLYGLVCEARSDYQAAVVSYRLARYAI 552 (1173)
Q Consensus 524 a~~~lg~i~~~~g~~~~A~~~~~kAl~l~ 552 (1173)
++..+|.+|...|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999987553
No 294
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.22 E-value=0.45 Score=42.91 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHH
Q 045024 146 VQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 146 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A 213 (1173)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 445666666677777777777777777777777777777776666543 44444455555555544333
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.21 E-value=0.073 Score=37.58 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.11 E-value=3.5 Score=49.35 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=70.5
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hh-------HHHHhHHHHHHhcCCHHHHHHHHHHHHhc
Q 045024 411 LQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL-AL-------PWAGMSADVQASESLVDDAFESCLRAVQI 482 (1173)
Q Consensus 411 l~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~-~~-------a~~~l~a~~~~~~g~~~eA~~~~~~al~~ 482 (1173)
++.+| .|..|..++......-.++.|...|-+.-.. |.- .. .--.+.+++-.--|++++|...|-.+=..
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence 34455 7899999999988888899999988776432 111 00 00011233444568899998888765444
Q ss_pred CCchHHHHHHHHHH-----HHhCCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 483 LPLAEFQIGLAKLA-----KLSGHLS-SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 483 ~p~~~~~~~la~l~-----~~~g~~~-~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
+-..+.+..++.+. .+.|..+ .++ .-..++..+|..+.....|++|.++|.+.
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~-------------~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDE-------------GKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43333333333222 1111111 011 12346777777777777788887777754
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=4.3 Score=40.63 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Q 045024 105 GGKESLEVVVCREASDKSPRA--FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS----PHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 178 (1173)
.++.++|+..|..+-+..-.. .-+.+..+.+..+.|+...|+..|.++-...|-. -.+...-+.+++..|.|++
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 345555666555554443322 2344555666666666666666666654433211 1233444555566666666
Q ss_pred HHHHHHHHH-HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 179 AIKSYGRAI-ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 179 A~~~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
-....+..- ..+|-...+...||..-.+.|++.+|...|..+.. +...+......+.+.+.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 555444422 12233344555566666666666666666666554 33333333344444433
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.60 E-value=0.91 Score=45.22 Aligned_cols=85 Identities=14% Similarity=-0.040 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
..+..+..+-...++.+++...+..+--+.|..+..-..-|.+++..|++.+|+..++.+.+..|..+.+--.++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34455555566667777777777777777777777777777777777777777777777777777777666677777777
Q ss_pred cCChH
Q 045024 207 LGNFR 211 (1173)
Q Consensus 207 ~g~~~ 211 (1173)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 66653
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.50 E-value=0.66 Score=41.87 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 45 HFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 45 ~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
.+++.++.+|++..+.+.+|..+.. .|++++|++.+-.+++.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCc
Confidence 3444444444444444444444444 4444444444444444443
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.41 E-value=1 Score=44.84 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=30.0
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
..++.+++...+..+--+.|+.+..-..-|.++...|+|.+|+.+|+.+....|..+.+--.++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333444444444444334444444444444444444444444444444444444444444444444444443
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=5.7 Score=39.83 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=93.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--c--HHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDD--SVSGEALCELLEHGGKESLEVVVCREASDKSPR--A--FWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~--~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--~--~~a~~~la~~~~~~g~~~~ 144 (1173)
.+..++|+..|...-+-+-.. .-+.+..+.+....|+...|+..|.++-...|- - -.+...-+.++...|-|+.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 577788888887765544332 234677788888888888888888887655432 1 2345566777788888888
Q ss_pred HHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 145 AVQSLQHAI-RGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 145 A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
...-.+..- ..+|-...+.-.||..-.+.|++.+|.+.|.++.. +...+....+.+.+...
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 776665432 23455566777888888889999999999888766 54555555666665543
No 302
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.26 E-value=1.3 Score=47.23 Aligned_cols=92 Identities=21% Similarity=0.198 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCC------CHHH
Q 045024 535 RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN-------ALDAVRECESLERQGML------DAEV 601 (1173)
Q Consensus 535 ~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-------~~eAi~~~~~~~~~~p~------~~~~ 601 (1173)
...+++|++.|.-|+-..+...+. ....+.++..+|.+|...|+ +..|++.|+++.+.... ....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 457888999888887554443322 33567889999999999998 55677777777655322 1346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 602 LQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 602 ~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
++.+|.+..+.|++++|...|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 688999999999999999999999984
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.19 E-value=0.27 Score=52.86 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
.|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 456666666666666666666666666666555555566666666666666666555554443
No 304
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.18 E-value=6.2 Score=43.30 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi 585 (1173)
+-+.....+++++|....++..++.- ..--..+|...|++|++..+. .++..+.....|...+|.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-------------~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-------------IYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-------------HHhhHHHHhhhccchhhh
Confidence 45667777888889888888877653 334567888888888766442 222222222333332332
Q ss_pred HHHHHHHHcCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 586 RECESLERQGMLDAE--VLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 586 ~~~~~~~~~~p~~~~--~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.+.+ .+.. ....++.+-.++|+..+|++.|+.+.+..|
T Consensus 267 ------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1111 1222 224567777777888888888877766444
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.05 E-value=2.8 Score=39.17 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC
Q 045024 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNS---HFQDISINLARSLSRAGNALDAVRECESLERQ-------GMLD 598 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~---~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-------~p~~ 598 (1173)
|.-....|-|++|...++++.+.....|...... -.+..+-.|+..+...|+|++++...++++.. +.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 3445567899999999999998877666543311 12456778999999999999988877777532 3333
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 599 ----AEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 599 ----~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+.+..+.++..+|+.++|+..|+.+-+
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 23447788999999999999999998866
No 306
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.86 E-value=0.15 Score=34.86 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~ 451 (1173)
.++..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999999999999999999999888763
No 307
>PRK10941 hypothetical protein; Provisional
Probab=92.84 E-value=0.85 Score=50.21 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999987653
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.78 E-value=3.9 Score=43.61 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=131.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----Cc-HHHHHHHHHHHHHcC
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSV----SGEALCELLEHGGKESLEVVVCREASDKSP-----RA-FWAFRRLGYLQLHHK 140 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~----a~~~La~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~a~~~la~~~~~~g 140 (1173)
..+.++|+..|++++++.+...+ ++-.+..++++.|++++-...|.+.+..-. +. ......+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 35899999999999999887654 467788899999999999999888764311 11 111111111111122
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHH
Q 045024 141 KWSEAVQSLQHAIRG--YPTSPHLW----EALGLAYHRLGMFSAAIKSYGRAIELDDT------------SIFPLLESGN 202 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~--~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~la~ 202 (1173)
+.+--...|+..+.. +..+...| ..+|.+|+..|+|.+-.+.+.+.-..... -.+.+..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 222222233322221 11222233 46899999999998887777765543211 1344445567
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHh
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~ 282 (1173)
+|..+.+-.+-...|++++.+...-|.. ..+|.+...-|+.+...|.|++|..-|-+|.+-+..........-.-|..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7888888888888999998775443322 256777777788888889999998888888877766544333333333333
Q ss_pred ch
Q 045024 283 GD 284 (1173)
Q Consensus 283 g~ 284 (1173)
++
T Consensus 279 AN 280 (440)
T KOG1464|consen 279 AN 280 (440)
T ss_pred HH
Confidence 33
No 309
>PRK10941 hypothetical protein; Provisional
Probab=92.38 E-value=1.2 Score=49.01 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
....++-.++.+.++++.|+.+.+.++.+.|+++.-+...|.+|.+.|.+..|...++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999999998776544443
No 310
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=12 Score=40.58 Aligned_cols=102 Identities=6% Similarity=-0.056 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH
Q 045024 526 NLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE 600 (1173)
Q Consensus 526 ~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~ 600 (1173)
..+..++.+.|.|.+|+......+.-+....+ .+....++..-..+|.+..+..++...+..+... .|....
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDD---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 46778889999999999998887765555433 4445567777788888888888888777766433 222222
Q ss_pred HH--HHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 601 VL--QVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 601 ~~--~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
+- +.-|...+...+|.-|..+|-.+++...
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 22 2335666777889999999999988554
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.21 E-value=0.8 Score=36.63 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 196 PLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 196 a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
.++.+|..+.++|+|++|..+.+.+++..|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455666666677777777777777777777666554
No 312
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.92 E-value=0.49 Score=50.99 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=33.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 445555555555555555555555555555555555555555555555555555555444433
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.86 E-value=30 Score=40.20 Aligned_cols=129 Identities=8% Similarity=-0.071 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHH-----HH-HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF-----RY-LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~-----~~-lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
.....|.++-.+++ +.+|.+.|.++.+...+.+..+ -. +-.+|+ .++.+.-.......-+..|..+....-
T Consensus 8 llc~Qgf~Lqkq~~-~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff--l~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 8 LLCFQGFILQKQKK-FQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF--LNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHHhhHHHHHHhh-hhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH--HhhHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34556777777776 8999999999886555543322 22 223333 467776666666666677888888888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPR---------------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
.|.+.++.+++.+|++.+......-.+ +...-...+.++...|++.++...+++.+..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 888889999999999888765443111 1222334677788899999999888887753
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.84 E-value=0.68 Score=37.01 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.++.+|..+.+.|+|++|..+.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455666666666666666666666666666655443
No 315
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.65 E-value=1.5 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 145 AVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 145 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
+++.+.++..+.|..+..++.+|.-+.....|+++....++++
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444433334444444444443
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.17 E-value=51 Score=41.60 Aligned_cols=100 Identities=12% Similarity=-0.002 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S-------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--- 193 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 193 (1173)
|......+.......++.+|...+.++...-|. . .......|.+....|++++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 444455566666677777777777666554332 1 2333445666667777777777777777665543
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 194 --IFPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 194 --~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
..++..+|.+..-.|++++|..+...+.+...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777776666533
No 317
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=7.2 Score=46.48 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 045024 111 EVVVCREASDKSPRAFWAFRR--LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGR-AI 187 (1173)
Q Consensus 111 A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 187 (1173)
++..+...+..+|.++..... +...+...++...+.-.+...+..+|++..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555544222 355555666666777777777777777777777777777666665555555444 66
Q ss_pred HhCCCChHHHHHH------HHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 188 ELDDTSIFPLLES------GNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 188 ~~~p~~~~a~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
...|.+......+ +.....+|+..++....+++....|.++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 6666665544444 6666677777777777777777777775443
No 318
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=41 Score=40.05 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 143 SEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+...+.+.......|+++......+..+...|+.+.|+..++..++..-. ..-.++.+|.++.-+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45555666666788988888888899999999988888888887761111 2334567888888899999999999998
Q ss_pred HhhcCCCHHHH-HHHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHHhhhcC
Q 045024 221 LKISSENVSAH-YGLASGLLGLAKQCIN-LGAFRWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 221 l~~~p~~~~a~-~~la~~~~~l~~~~~a-~g~~~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
.+.+.-+.-.+ +..|-+++...+.... .|+-+.+..+.+.............|
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P 384 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLP 384 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCc
Confidence 77654333323 3344666655554444 45677777767776666665443333
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.75 E-value=3.4 Score=38.63 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
-....|-+++|...++++++..... ..+++.. .+--|...+..|+..+...|+|+++
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srti----------------P~eEaFD-------h~GFDA~chA~Ls~A~~~Lgry~e~ 74 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTI----------------PAEEAFD-------HDGFDAFCHAGLSGALAGLGRYDEC 74 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-----------------TTS----------HHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccC----------------ChHhhcc-------cccHHHHHHHHHHHHHHhhccHHHH
Confidence 3346778888888888887753210 0011110 0011455677889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCC--CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045024 542 VVSYRLARYAISSSSGTVP--NSHFQDISINLARSLSRAGNALDAVRECESLER 593 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~--~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~ 593 (1173)
+..-++++..++...+-.. ...+..+.++.+..+...|+.++|+..|+.+.+
T Consensus 75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999887766533222 234556677889999999999999999998753
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.57 E-value=39 Score=39.22 Aligned_cols=123 Identities=6% Similarity=-0.054 Sum_probs=82.9
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
..|+ .-.|-+.+..++...|.+|......+.+... .|+|+.+...+..+-..-.....+...+.+.....|++++|..
T Consensus 301 ~~gd-~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~-lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGD-IIAASQQLFAALRNQQQDPVLIQLRSVIFSH-LGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccC-HHHHHHHHHHHHHhCCCCchhhHHHHHHHHH-hhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3444 6666677777777777777777777777777 7887777777665544433444445555566667777777777
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..+-++...-++++....-+.....+|-++++....++.+.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777777666566666555555556667777777777777777664
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.49 E-value=2.8 Score=41.11 Aligned_cols=80 Identities=11% Similarity=-0.041 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.....-...++.+++...+..+--+.|+.++.-..-|.+++..|++++|+..++...+..+..+...-.++.++..+|+.
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33344445677777777777776777777777777777777777777777777777666666666666666676666665
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.43 E-value=3.3 Score=42.69 Aligned_cols=101 Identities=16% Similarity=0.025 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCH
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDA 599 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~ 599 (1173)
..++..+|..|.+.|+.++|++.|.++.+.. ....+....++.+.++....|++........++... .+.+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 3578899999999999999999999985431 114456678999999999999999999998888543 22222
Q ss_pred H----HHHHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 600 E----VLQVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 600 ~----~~~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+ ....-|..+...++|.+|.+.|-.+...
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2 2245678888899999999999877653
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.38 E-value=0.41 Score=32.57 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP 89 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p 89 (1173)
++..+|.++.. .|++++|...|+++++.+|
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence 34445555555 5555555555555555444
No 324
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=19 Score=42.83 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-------------------
Q 045024 39 KEKAAEHFVIAAKL------------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------------------- 87 (1173)
Q Consensus 39 ~~~A~~~~~~al~~------------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------------------- 87 (1173)
|++|...|.-+... .|-..+.+..++.+... +|+.+-|....++++=.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~-qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF-QGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 67788877777643 34456888899999999 99988877777776521
Q ss_pred --CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH-----h
Q 045024 88 --SPDDSVS---GEALCELLEHGGKESLEVVVCREASDKSPR-AFWAFRRLGYLQ-LHHKKWSEAVQSLQHAIR-----G 155 (1173)
Q Consensus 88 --~p~~~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~-~~~g~~~~A~~~l~~al~-----~ 155 (1173)
.|.|-.. .+.....+.+.|-+..|.++++-++.++|. +|.+...+..+| ++..+|+=-+..++..-. .
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 1222222 223334445667778888888888888776 666555555544 455566666666655422 2
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 045024 156 YPTSPHLWEALGLAYHRLGM---FSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 192 (1173)
-|+ ...-..+|..|..... ...|...+.+|+...|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 232 2233455666655544 45566667777766653
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.00 E-value=9.9 Score=37.41 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK 107 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~ 107 (1173)
++++...+...--+.|+.++.-..-|.++.. .|+|.+|+..|+...+..+..+...-.++.++...||
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 5555555555555566666666666666666 6666666666666555555555555555555555544
No 326
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.00 E-value=12 Score=44.33 Aligned_cols=234 Identities=15% Similarity=0.031 Sum_probs=121.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHH
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQR 83 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~ 83 (1173)
.+.+.......|+++...+..+..+...|+ .+.|+..++..+. +. ..-.++.+|.++.. +.+|.+|...+..
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~-~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGN-SEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDL 328 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHccc-HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH
Confidence 455566666777777777777777777777 6777777777665 21 12355677777777 7778888877777
Q ss_pred HHhhCCCCHHHHHHHH-HHHHH--------CCCHHHHHHHHHHH---HhhCCCcHHH---HHHHHHHHHHcCCHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALC-ELLEH--------GGKESLEVVVCREA---SDKSPRAFWA---FRRLGYLQLHHKKWSEAVQS 148 (1173)
Q Consensus 84 al~~~p~~~~a~~~La-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~a---~~~la~~~~~~g~~~~A~~~ 148 (1173)
..+.+.-..-.+..++ -++.. .|+-+.|..+++.. +...|.+... ..+.+.-+...+.
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------- 401 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------- 401 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------
Confidence 7665543333333333 22211 22333333333322 2222222110 0111111111110
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHH---h-CCCC-hHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 149 LQHAIRGYPTSPH--LWEALGLAYHR--LGMFSAAIKSYGRAIE---L-DDTS-IFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 149 l~~al~~~p~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al~---~-~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.++..+. .++.++.++-. ....++.. -++...+ . ++++ .--++.+|.++..+|+...|..+|..
T Consensus 402 ------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i 474 (546)
T KOG3783|consen 402 ------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKI 474 (546)
T ss_pred ------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 12333333321 12222222 1222221 1 2222 23356789999999999999999998
Q ss_pred HHhhcC---C----CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 045024 220 ALKISS---E----NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 220 al~~~p---~----~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
.++... . -|.++|.+|..+..++. -+.++..++.+|.+.+
T Consensus 475 ~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g------~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 475 QVEKESKRTEDLWAVPFALYELALLYWDLGG------GLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhccc------ChHHHHHHHHHHHhhc
Confidence 885321 1 14567777777666544 3677777777776654
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=11 Score=44.87 Aligned_cols=133 Identities=17% Similarity=0.050 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWEA--LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
...-++..+...+.++|.++..+.. +...+...++...+.-.+...+..+|++..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334666666677788888887544 46677778999999999999999999999999999999888888877776666
Q ss_pred H-HHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 219 L-ALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 219 ~-al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
. +....|.+......+...+. .++.....+...++....+.+.+..++.......
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 6 77888998887777766666 8888888888888888888888777766444333
No 328
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=38 Score=37.84 Aligned_cols=107 Identities=14% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIE----LDD--TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~----~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
-..+..+|...++|.+|+......+. ++. .-++++..-..+|+.+.+..+|...+..+-.....---.-...|.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 34678889999999999888776654 222 235667777888999999999988887765432111001113455
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
+-+..|-.+.+..+|..|..+|-+|.+-|....
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~ 243 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD 243 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccC
Confidence 666677777777889999999999988766543
No 329
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.72 E-value=2.9 Score=43.18 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.++..+|..|.+.|+.+.|++.|.++.+.... -.+.++.+..+....|++.....+..++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 45566777777777777777777776654332 2345566666666677777777666666543222 1112222223
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH
Q 045024 238 LLGLAKQCINLGAFRWGASLLEDAC 262 (1173)
Q Consensus 238 ~~~l~~~~~a~g~~~~A~~~l~~Al 262 (1173)
-...|-.....++|..|...|-++.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3333334444555655555544443
No 330
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.71 E-value=3.6 Score=53.41 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=130.4
Q ss_pred HHHHHHHHHHCCCHHHHHH------HHHH-HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 045024 95 GEALCELLEHGGKESLEVV------VCRE-ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTS 159 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~------~~~~-al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~ 159 (1173)
....+......|.+.+|.+ .+.+ .-.+.|.....+..++.++...|++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4455566666777777776 5542 23446778889999999999999999999988776543 2455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH-H
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIEL--------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS-A 230 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-a 230 (1173)
...+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+.+.+.+......-.. -
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 667888888888899999999999988875 2344445567888888999999999999999885432111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
...-+.++...++.....+++..|......+..++....
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ql 1133 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQL 1133 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhh
Confidence 224456777778888888889988888888888777654
No 331
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.97 E-value=0.57 Score=48.72 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+.|+.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345555666666666666666666666666666666666666666666666665554
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.95 E-value=6.3 Score=41.95 Aligned_cols=86 Identities=12% Similarity=-0.069 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--CCCC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--SGTV--PNSHFQDISINLARSLSRAGNALDAVRECESLERQGML 597 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--pe~~--~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~ 597 (1173)
...+..+|++|...|+.+....++++|+...... .++. ....-..+.+.+|.+..+.|++++|+..|.+++...-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4466788999999999777777777666654433 1111 12234568889999999999999999999999865433
Q ss_pred C-HHHHHHHHH
Q 045024 598 D-AEVLQVYAF 607 (1173)
Q Consensus 598 ~-~~~~~~la~ 607 (1173)
+ +..+..+|+
T Consensus 198 s~~~~l~~~AR 208 (214)
T PF09986_consen 198 SKEPKLKDMAR 208 (214)
T ss_pred CCcHHHHHHHH
Confidence 3 234444443
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.52 E-value=0.88 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
..++.++|.+|...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999998875
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.24 E-value=7.1 Score=37.58 Aligned_cols=72 Identities=14% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGM---FSAAIKSYGRAIE-LDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
....++++.++....+ ..+.+..++..++ -.|. .-+..+.++..+++.++|++++.+.+..++..|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4567778888877554 4567888888886 4443 456778888899999999999999999999999988765
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.12 E-value=0.93 Score=33.74 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
.++.++|.+|...|++++|+..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888887777777643
No 336
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.57 E-value=0.74 Score=47.94 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44566777777777777777777777777777777777777777777777777777653
No 337
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.46 E-value=11 Score=43.01 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=120.4
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF-----------SIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-----------~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
+.+.--+++++.=.+.+..+|+...+|...-.++... ..-.++-+.+...+++.+|+.-.+|.....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444236777777777788888777776554444330 22456778889999999999999999999999
Q ss_pred HHCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 045024 103 EHGGK--ESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR---- 172 (1173)
Q Consensus 103 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---- 172 (1173)
.+.+. +..-++.++++++.+|.+..+|...=.+... .....+-+++..+++..++.|..+|.....++..
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 87764 6888999999999999986665443333322 2336677888899999999999999887766652
Q ss_pred --cCC------HHHHHHHHHHHHHhCCCChHHHHH
Q 045024 173 --LGM------FSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 173 --~g~------~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
.|+ ...-++....++-.+|++..+|+.
T Consensus 200 ~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 200 EADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred cccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 342 234456667777889999888876
No 338
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.30 E-value=1.6 Score=50.66 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=80.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.++.++..+++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 33334445678889999999999999999999988888874 677788888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCH
Q 045024 210 FRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~ 228 (1173)
+.+|++....+....|.+.
T Consensus 461 ~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhhhHHHHhhcCchhh
Confidence 9999998888777777554
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.62 E-value=5.2 Score=41.53 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLS-PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR----AFWAFRRLGYLQLHHKKWSEA 145 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~-p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 145 (1173)
.-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.++++..+. +++.+..++.++..+|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333456666665543221 245666777776666 55778888888888777543 477888888888888888777
Q ss_pred H
Q 045024 146 V 146 (1173)
Q Consensus 146 ~ 146 (1173)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 340
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.58 E-value=3.2 Score=37.79 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045024 531 VCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ 594 (1173)
Q Consensus 531 i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~ 594 (1173)
...+.|++.+|++.+.+..+.............+..+..++|.+....|++++|+..++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467899999999999887765443221111245567778888888888888888888888755
No 341
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.42 E-value=12 Score=35.98 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
.+.++..+++.++|+.++.+.+..++..|+|..
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334444444444444444444444444444433
No 342
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.31 E-value=2.2 Score=49.65 Aligned_cols=87 Identities=24% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG---GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS 148 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 148 (1173)
+....|+..|.+++...|.....+...+.++++. |+.-.|+.-+..+++++|....+++.++.++...+++.+|+..
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666666655555555443 3455555555666666666666666666666666666666666
Q ss_pred HHHHHHhCCC
Q 045024 149 LQHAIRGYPT 158 (1173)
Q Consensus 149 l~~al~~~p~ 158 (1173)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 5555555553
No 343
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.28 E-value=5.5 Score=51.83 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHH------HHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------C
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIK------CYQR-AVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--------S 122 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~------~~~~-al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--------~ 122 (1173)
.-....|..... .|.+.+|.+ .+.+ .-.+.|.....+..++.++...|++++|+....++.-. .
T Consensus 933 ~~~~e~gq~~~~-e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALL-EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhc-ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345667777777 888888887 4442 22346777888999999999999999999998777433 2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-- 192 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 192 (1173)
|+....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++.+.|+.....
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 445677888888888899999999999988764 3555556678888888899999999999999986432
Q ss_pred ------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 193 ------SIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 193 ------~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
....+..+++.+...+++..|....+...
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 23344555666666666666555554443
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.11 E-value=4.9 Score=47.91 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 045024 526 NLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVY 605 (1173)
Q Consensus 526 ~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~l 605 (1173)
-+-|.-.++..+|..+++.|+..+..+. .+....+|+....+++-+|....+.+.|+++++++-+.+|.++-.....
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~---~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDII---SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhcc---chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3456667788999999999998865443 3334677899999999999999999999999999999999999888888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 606 AFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 606 a~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
-.+....|.-++|+.......+...
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhc
Confidence 8999999999999999998877543
No 345
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.71 E-value=83 Score=37.20 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS- 122 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~- 122 (1173)
....+++.. ..+-.+++.++++|.. . ..++=...+++.++.+-++...-..|+..|.+ ++...+...|.+++...
T Consensus 87 h~c~~~l~~-~e~kmal~el~q~y~e-n-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 87 HLCTRVLEY-GESKMALLELLQCYKE-N-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHHh-c-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 344455543 4456788888888888 6 55667778888888888887777788877766 78888888888886542
Q ss_pred CC--c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 123 PR--A---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP-TSPH-LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 123 p~--~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
|. + .+.|..+-. +--.+.+.-+....+.-.... .... ++..+-.-|....++++|++.+.-.++.+..+..
T Consensus 163 ~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 163 PRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred chhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 21 1 122322211 112344444444444333222 1122 2222234455678899999999999988888877
Q ss_pred HHHHHHHHHHH--------------------cCChHHHHHHHHHHHhhcCCC
Q 045024 196 PLLESGNIFLM--------------------LGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 196 a~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+.-.+...+.. -.++.+++..|++.+-.+..|
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 77666655544 345566666666666655554
No 346
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=37 Score=39.08 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=117.5
Q ss_pred cCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 71 SIDT-QRAIKCYQRAVSLSPDDSVSGEALCELL------------EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 71 ~g~~-~eA~~~~~~al~~~p~~~~a~~~La~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.|.+ +++++.=.+.+..+|+...+|...-.++ .++.-.++-+.+...+++.+|+...+|+.+..++.
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3444 3466666666777777665544332222 12224677888999999999999999999999998
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Q 045024 138 HHK--KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG----MFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----- 206 (1173)
Q Consensus 138 ~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----- 206 (1173)
+.+ ++..-++..+++++.+|.+..+|...-.+..... ...+=++..++++..++.+..+|.....++..
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 766 4688899999999999999888876655554432 34566788889999999999999887777652
Q ss_pred -cCC------hHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 207 -LGN------FRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 207 -~g~------~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
.|+ ...-++.-..++-.+|++..+|+.
T Consensus 201 ~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 201 ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 342 234455666777789999888765
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.30 E-value=35 Score=40.68 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=82.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHH
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFG 509 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~ 509 (1173)
-.|+++++.+.... -++-|.-+..+....+..+.+.|-++.|+.. ..+++..+.++ ...|+
T Consensus 273 ~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~-------~~D~~~rFeLA---l~lg~-------- 333 (443)
T PF04053_consen 273 LRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQF-------VTDPDHRFELA---LQLGN-------- 333 (443)
T ss_dssp HTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHH-------SS-HHHHHHHH---HHCT---------
T ss_pred HcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhh-------cCChHHHhHHH---HhcCC--------
Confidence 35566665555531 2233444444444345455566666666553 22223333222 12222
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 045024 510 AIQQAIQR--GPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRE 587 (1173)
Q Consensus 510 ~l~~al~~--~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~ 587 (1173)
++.+++. ..+++.-|..+|......|+++-|++.|+++- -+..|.-+|...|+.+.=.+.
T Consensus 334 -L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 334 -LDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK-----------------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHCT-HHHHHHH
T ss_pred -HHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------------CccccHHHHHHhCCHHHHHHH
Confidence 2223332 23578899999999999999999999999772 256677888899997555555
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 588 CESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 588 ~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
.+.+...+-.+. + -.+++.+|+.++.++.+.+.
T Consensus 396 ~~~a~~~~~~n~-a----f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGDINI-A----FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-HHH-H----HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccCHHH-H----HHHHHHcCCHHHHHHHHHHc
Confidence 544433332221 1 24566778888888777654
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.21 E-value=2 Score=46.66 Aligned_cols=87 Identities=5% Similarity=-0.117 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC
Q 045024 44 EHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA-LCELLEHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 44 ~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~-La~~~~~~g~~~~A~~~~~~al~~~ 122 (1173)
-.|.++....|+++..|...+..-.. .|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+.++.+
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 34445555566666666666666666 666666666666666666666666555 3344455666666666666666666
Q ss_pred CCcHHHHHH
Q 045024 123 PRAFWAFRR 131 (1173)
Q Consensus 123 p~~~~a~~~ 131 (1173)
|++|..|..
T Consensus 173 ~~~p~iw~e 181 (435)
T COG5191 173 SRSPRIWIE 181 (435)
T ss_pred CCCchHHHH
Confidence 666655543
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.16 E-value=28 Score=41.55 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGR 185 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 185 (1173)
++..|..||.....+|+++-|.++|++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344455555555555555555554444
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.86 E-value=1.1e+02 Score=36.93 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=81.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC--C----C---------CCCCCchHHHHHHHHHHHHhcCCH
Q 045024 517 RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSS--S----G---------TVPNSHFQDISINLARSLSRAGNA 581 (1173)
Q Consensus 517 ~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~--p----e---------~~~~~~~~~~~~~La~~~~~~g~~ 581 (1173)
..|-....+..++.+...+|+.+.|....++++=.++.. | . .+++..+..+.+..-..+.+.|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 357788899999999999999999999888887544432 1 1 112444555666666777888999
Q ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 045024 582 LDAVRECESLERQGML-DAEVLQVYAFSLW-QLGKYDLALSMARNL 625 (1173)
Q Consensus 582 ~eAi~~~~~~~~~~p~-~~~~~~~la~a~~-~~g~~~eA~~~~~~a 625 (1173)
..|.+.++-+++.+|. ||-+...+..+|. +..+|.==++.++..
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998 8877766666665 566777667766655
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.48 E-value=1e+02 Score=36.46 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=116.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Q 045024 10 QLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS- 88 (1173)
Q Consensus 10 ~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~- 88 (1173)
.+.+++.. .++-.+++.++.+|.+.++ ++-...+++.++.+-++...-..++..|.. ++-..+..+|.+++...
T Consensus 88 ~c~~~l~~-~e~kmal~el~q~y~en~n--~~l~~lWer~ve~dfnDvv~~ReLa~~yEk--ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 88 LCTRVLEY-GESKMALLELLQCYKENGN--EQLYSLWERLVEYDFNDVVIGRELADKYEK--IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHHhcCc--hhhHHHHHHHHHhcchhHHHHHHHHHHHHH--hchhhHHHHHHHHHHHhc
Confidence 45555553 4556788999999988744 888899999999999999888899988877 88899999999998643
Q ss_pred CC--CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 045024 89 PD--DS---VSGEALCELLEHGGKESLEVVVCREASDKSPR-AF-WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH 161 (1173)
Q Consensus 89 p~--~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~-~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 161 (1173)
|. +. ++|..+-. .--.+.+.-+....++-..... .. .++..+-.-|....++++|++.+...++.+..+..
T Consensus 163 ~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 163 PRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred chhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhh
Confidence 31 11 12322221 1123444444444444333222 11 22333334556678999999999999999888877
Q ss_pred HHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCC
Q 045024 162 LWEALGLAYHR--------------------LGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 162 ~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+.-.+...+.. -.++-.++..|++.+-.+.++
T Consensus 241 ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 241 ARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 77666655544 345666666666666655544
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=83.35 E-value=2 Score=46.67 Aligned_cols=77 Identities=8% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA-LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.|+++..|...+..-...|-+.+--..|.++++.+|.+++.|.. .+.-+...++++.+...|.+++.++|+++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444444444444444444444444444455555554444443 233334444555555555555555555444443
No 353
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=82.62 E-value=69 Score=38.77 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 421 WAHIGKLYGEVGEKKLARQAFDSARSI--------------DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 421 ~~~Lg~~y~~~g~~e~A~~~f~~al~~--------------~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
|-.|+.-....=+++-|.+.|.+...+ ....|... +++..+.-.|++.||..+|.+.-..+..-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i--LlA~~~Ay~gKF~EAAklFk~~G~enRAl 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL--LLADVFAYQGKFHEAAKLFKRSGHENRAL 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH--HHHHHHHhhhhHHHHHHHHHHcCchhhHH
Confidence 566666666666777777777665431 11112222 23556666888888888887543332222
Q ss_pred HHHHHHHHH-----HHHhCCCChHHHHHHHHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHhh
Q 045024 487 EFQIGLAKL-----AKLSGHLSSSQVFGAIQQA--IQRGPHYPESHNLYGLVCEARSDYQAAVVSYR------LARYAIS 553 (1173)
Q Consensus 487 ~~~~~la~l-----~~~~g~~~~~~A~~~l~~a--l~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~------kAl~l~~ 553 (1173)
+.+..+-.+ ....|. .++-....++- -..+-+.|.+ -+.++...|+.++|+.+.- -++++..
T Consensus 666 EmyTDlRMFD~aQE~~~~g~--~~eKKmL~RKRA~WAr~~kePka---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGD--PKEKKMLIRKRADWARNIKEPKA---AAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHhhhcCCcHH---HHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 223222222 222232 22222222221 1122233332 4566677777777766432 1111111
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 554 SSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 554 ~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
.. ...-...+..++..+.+...+.-|-+.|.++- | .-.+...+...+++++|....++.=+..
T Consensus 741 kl-----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-----D---~ksiVqlHve~~~W~eAFalAe~hPe~~---- 803 (1081)
T KOG1538|consen 741 KL-----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-----D---LKSLVQLHVETQRWDEAFALAEKHPEFK---- 803 (1081)
T ss_pred hc-----chhhhhHHHHHHHHHhhccccchHHHHHHHhc-----c---HHHHhhheeecccchHhHhhhhhCcccc----
Confidence 10 00011234445555555566666666666552 1 1223455667778888877666543322
Q ss_pred cchhhhhHHHHHHHHHHhcChhhhhHHhhhCC
Q 045024 634 QSSAAASVSFICRLLYHISGLDSTINSILKMP 665 (1173)
Q Consensus 634 ~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p 665 (1173)
++++.-.|+-+......++|.+...+..
T Consensus 804 ----~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 804 ----DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ----ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 2555555666666666666665444443
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.53 E-value=9.1 Score=42.20 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 564 FQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 564 ~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
+..++..++..+...|+++.+++.+++++..+|.+...+..+-.+|.+.|+...|+..|+++-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999866
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.30 E-value=82 Score=34.42 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC--CHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIEL------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE--NVSAHYGL 234 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l 234 (1173)
-..++.++++.|+|.+|+......+.- .+.-...+..-..+|....+..++...+..+-..... .|+ ...
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp--qlq 205 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP--QLQ 205 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH--HHH
Confidence 345678889999999999887766532 2344667777888899988888888777766443211 111 123
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
|.+-...|-......+|..|..+|-+|.+-+..
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 444444555555667788888888888876543
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.21 E-value=1.1e+02 Score=35.80 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.||...|-.-...++...|.++......+.+....|+|+.+...+..+-..-..-..+...+-.....+|++++|...-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45555555555556666666655555555666666666666555544433322222333344444555566666665555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
-++...-.+++....-+.....+|-++++...+++.+.++|.
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 555444444444444444444455556666666666555554
No 357
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.54 E-value=80 Score=38.23 Aligned_cols=211 Identities=10% Similarity=0.047 Sum_probs=117.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH------
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAK--------------LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA------ 84 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~--------------~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a------ 84 (1173)
|-.++...++.-+ ++-|.+.|.++-. .....|.. ..++..+.- .|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~-f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~-iLlA~~~Ay-~gKF~EAAklFk~~G~enRA 664 (1081)
T KOG1538|consen 588 WRELAMEALEALD-FETARKAYIRVRDLRYLELISELEERKKRGETPND-LLLADVFAY-QGKFHEAAKLFKRSGHENRA 664 (1081)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH-HHHHHHHHh-hhhHHHHHHHHHHcCchhhH
Confidence 4445554444444 6666666655421 11222222 356677777 78999998888753
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHH----------HHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSL----------QHA 152 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l----------~~a 152 (1173)
+++..+ .-.+.++.-++..|..++-....++-.+- +-+.|. ..+..+...|+.++|+... +-+
T Consensus 665 lEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 665 LEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 222211 12455666666667666655555443221 111222 2456677788888877643 222
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
-+++..+.+.+..++..+.+...+.-|.+.|.+.-. .-.+.+++...+++++|...-++.-+.-| ..++
T Consensus 740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~ 808 (1081)
T KOG1538|consen 740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD---DVYM 808 (1081)
T ss_pred hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc---cccc
Confidence 334445566666777777777777778877776522 12355667788899998877666433322 2444
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
-.|+.+.+..+ |++|.+.|.+|
T Consensus 809 pyaqwLAE~Dr-------FeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAENDR-------FEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhhhhh-------HHHHHHHHHHh
Confidence 44554444444 55555544443
No 358
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=81.40 E-value=85 Score=34.03 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhc
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLM-LGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~-~g~~~~A~~~~~~al~~~ 224 (1173)
+..++.+..+.|+|++.+..+.+++..+|. +.+-...+..+|-. .|....+...+.......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 456788888888888888888888888665 34444555555532 355555555555554433
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.98 E-value=11 Score=41.56 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
..++..++..+...|+++.++..+++.+..+|-+-..+..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567788888888999999999999999999999999999999999999999999988887653
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.96 E-value=14 Score=40.37 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++.-|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3445566777888888888888888888888877788888888888888888888888888888776543
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.83 E-value=7.2 Score=28.41 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 045024 419 DAWAHIGKLYGEVGEKKLARQA--FDSARSIDPSL 451 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~--f~~al~~~P~~ 451 (1173)
+.++.+|..+...|++++|++. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5677888888888888888888 44666666653
No 362
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.59 E-value=2.6e+02 Score=36.80 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=90.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 045024 100 ELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHH----K---KWSEAVQSLQHAIRGYPTSPHLWEALGLA 169 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~----g---~~~~A~~~l~~al~~~p~~~~~~~~la~~ 169 (1173)
.++.....|+.|+..|+++....|.. .++.++.|.....+ | .+++|+..|++. ...|.-|--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 66777788999999999999988864 56777888777643 3 477777777764 3456677788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHhhcCCCH
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML-----GNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~ 228 (1173)
|.++|++++-+++|.-+++..|+.+..-...-.+-.++ .+...|....--++...|...
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999999999998875433322222221 122334444444555556543
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.56 E-value=39 Score=35.29 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=52.4
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~ 212 (1173)
....-++|...|-++-.... ++++..+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.++..+|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 33344566666655433221 56777788877776 66788888888888887543 47788888888888888887
Q ss_pred HH
Q 045024 213 GV 214 (1173)
Q Consensus 213 A~ 214 (1173)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.94 E-value=1.4e+02 Score=33.15 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=68.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
+.+.....+..+..+-++....+++++|....++..++.-- ..-..+|...++++++.... .+.........|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc
Confidence 33444445556666777777778888888777776666532 23356777777777764321 1222222222222
Q ss_pred HHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 045024 176 FSAAIKSYGRAIELDDTSI--FPLLESGNIFLMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 225 (1173)
..+|. .+.+ .++ ..-..++.+..++|+..+|++.++...+..|
T Consensus 262 ~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 262 QHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred chhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 22221 1112 222 2335788899999999999999998877665
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=74.93 E-value=16 Score=39.79 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
...+=..+...++++.|..+.++.+.++|.++.-+...|.+|.+.|.+.-|++.++..++..|+++.+-...+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3445566788899999999999999999999999999999999999999999999999999999876654443
No 366
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.25 E-value=44 Score=40.14 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 519 PHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 519 P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
.++..-|..||+.....|++..|.+.|.++..+ ..|-.++...|+-+.-...-..+.+.+..+
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~-----------------~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDL-----------------GSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcch-----------------hhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 367778899999999999999999999988432 334445556666554333344444444444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 599 AEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 599 ~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
... .+|+..|+++++++.+.+-
T Consensus 726 ~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHH-----HHHHHcCCHHHHHHHHHhc
Confidence 332 4688999999998877643
No 367
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.74 E-value=38 Score=36.73 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH-hcCCHHHHHHHHH
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA-SESLVDDAFESCL 477 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~-~~g~~~eA~~~~~ 477 (1173)
-+..++.+..+.|+|++.+.++++++..+|+...--.+++..+|- ..|....+...+.
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~ 61 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILS 61 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhh
Confidence 356789999999999999999999999988765544444444442 2333344444433
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.54 E-value=4 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFD 442 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~ 442 (1173)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677778888888888777665
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.24 E-value=20 Score=32.59 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=46.8
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHHH--HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVSA--HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
..+.|++.+|++.+.+.+......... ...+......++......|.+++|...+++|+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 356788888888887777654332221 123444566677778888899999999999999887654
No 370
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=73.12 E-value=5.4 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999999999988876
No 371
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.56 E-value=2.6e+02 Score=34.93 Aligned_cols=163 Identities=9% Similarity=-0.017 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH---hhCCCCHHHHHHHHH---HHH-------HCCC-----HHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV---SLSPDDSVSGEALCE---LLE-------HGGK-----ESLEVVVC 115 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al---~~~p~~~~a~~~La~---~~~-------~~g~-----~~~A~~~~ 115 (1173)
|+...+-.....+|+. .|+|++|+++--++- ..++++.......+. .|. ..-. .++-....
T Consensus 56 ~er~~AaL~~SKVyy~-Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 56 PERQLAALLASKVYYY-LGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIV 134 (929)
T ss_pred chhHHHHHHHHHHHHH-HHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 3334566678899999 999999999876662 233433322211111 111 1001 22333444
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-CCC
Q 045024 116 REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM-FSAAIKSYGRAIELD-DTS 193 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~-p~~ 193 (1173)
++++...-++...+..+|..+.- ..+..+++++-...........+-.+.....+ -+--.+.+...++.. +--
T Consensus 135 ~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~ 209 (929)
T KOG2062|consen 135 ERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP 209 (929)
T ss_pred HHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 45554444444444444444321 12333444322111222222222222222222 222223333333321 111
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
..-++.+..+|.-+.+.+.+...+++.++
T Consensus 210 ~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 210 SPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred CCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 12346678888899999999999999887
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.09 E-value=20 Score=40.98 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--------C-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYP--------T-----S-----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p--------~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
=|...+++++|..|..-|..++++.. . + ...-..+..+|.+.++.+.|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35666778888888888888777532 1 1 1233467889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
...+...|.++..+.+|.+|...+.-+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987765543
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.48 E-value=4.8 Score=26.78 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 523 ESHNLYGLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 523 ~a~~~lg~i~~~~g~~~~A~~~~~ 546 (1173)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999999876
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.75 E-value=8.1 Score=29.59 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 569 INLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 569 ~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
+++|+.|..+|+.+.|.+.+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 344555555555555555555444
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.62 E-value=16 Score=39.88 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
.....++.|...|.+.+|++..++++..+|.+...+..+-.++...|+--.|++.|++..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4556788899999999999999999999999999999999999999999999999998755
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.22 E-value=33 Score=29.93 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHccCCHHHHHHHHHHHH
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLG---HYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg---~~~~~~~g~~~eA~~~~~~al 85 (1173)
....|.-++..++ .++|+..+.++++..++.++.+..+| .+|.. .|+|.+.+.+--+-+
T Consensus 9 ~ie~GlkLY~~~~-~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNE-TQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455666666665 67777777777777666665554444 45555 666666666544433
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.09 E-value=7.1 Score=29.91 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 603 QVYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 603 ~~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+.+|.+|..+|+.+.|.+.++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999963
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.08 E-value=78 Score=30.56 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcC
Q 045024 536 SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDAEVLQVYAFSLWQLG 613 (1173)
Q Consensus 536 g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~~~~~~la~a~~~~g 613 (1173)
|.-..-...++++++.+...+.-..++++..++...+... + ++.++|..+... +......+...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----S--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----S--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----c--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 4555566778888776655433333455655665555422 2 888888888764 5556777788889999999
Q ss_pred ChHHHHHHHHHHh
Q 045024 614 KYDLALSMARNLA 626 (1173)
Q Consensus 614 ~~~eA~~~~~~aL 626 (1173)
++++|.++|+..+
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998754
No 379
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.98 E-value=57 Score=37.53 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
.+..+|.+.++.+.|+....+.+-.+|..+.-+...|.++..+.+|.+|...+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555554443
No 380
>PRK12798 chemotaxis protein; Reviewed
Probab=68.69 E-value=2.4e+02 Score=33.00 Aligned_cols=210 Identities=14% Similarity=0.011 Sum_probs=127.4
Q ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 045024 406 ALIRGLQLDVS-LADAWAHIGKLYGEVGEKKLARQAFDSARSI-DPSLALPWAGMSADVQASESLVDDAFESCLRAVQIL 483 (1173)
Q Consensus 406 a~~kal~l~p~-~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~-~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~ 483 (1173)
.++..+..++. +.+.-..-|..-+-.|+-++|.+.+...-.. .|....+++.+..-......+..+|+..|..+--..
T Consensus 99 vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 99 TLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA 178 (421)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC
Confidence 34455544443 5566666777778889999999888754221 222333444433334557789999999999999888
Q ss_pred Cch---HHHHHHH-HHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 045024 484 PLA---EFQIGLA-KLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLY---GLVCEARSDYQAAVVSYRLARYAISSSS 556 (1173)
Q Consensus 484 p~~---~~~~~la-~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~l---g~i~~~~g~~~~A~~~~~kAl~l~~~~p 556 (1173)
|.. +.-+... .+....|+ .++....-.+.+.+...++.+.... .....+.++-..- +.+..++ ...+
T Consensus 179 PGTLvEEAALRRsi~la~~~g~--~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~l---s~~d 252 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGD--ADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEIL---SFMD 252 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCc--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHH---HhcC
Confidence 854 3333332 22234444 4577778888888877777654432 2233333321111 2233332 2211
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 557 GTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML----DAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 557 e~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~----~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
......+|..+++.-.-.|+.+-|.-.-+++...... ...+.+..+.+..-..++++|++.+.++
T Consensus 253 ----~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 253 ----PERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred ----chhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 2233458888999888999998888888888766422 2345566666666677778777777655
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.34 E-value=3.3e+02 Score=34.44 Aligned_cols=139 Identities=7% Similarity=-0.159 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHH--
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG--KESLEVVVCREASDKSPRAFWAFRRLGYL-- 135 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~-- 135 (1173)
.+.-+.-... .|++..+.....+. .-.|- ..+.....+....+ .++ .+...++..|+.|..-......
T Consensus 36 ~f~~A~~a~~-~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 36 RYQQIKQAWD-NRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHH
Confidence 4444555556 67766665444432 22232 22222222222222 222 2333344455544333222222
Q ss_pred -HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 136 -QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 136 -~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
+.+.+++..-+..+ ...|.+.......+......|+.++|.....++-......+.....+-..+.+.|..
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 22344555444422 123566666666666777777766666666655544444444444444444444433
No 382
>PF13041 PPR_2: PPR repeat family
Probab=68.06 E-value=17 Score=28.32 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHH
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYA 606 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la 606 (1173)
.+|..+...+.+.|++++|.+.|+++.+.+..+ ...+..+-
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 368888899999999999999999998876554 33443333
No 383
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.78 E-value=41 Score=36.77 Aligned_cols=85 Identities=18% Similarity=0.062 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHc
Q 045024 539 QAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGML------DAEVLQVYAFSLWQL 612 (1173)
Q Consensus 539 ~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~------~~~~~~~la~a~~~~ 612 (1173)
...++.+++|...+..... ......+...+|.-|...|++++|++.|+.+...... ....+..+..++.+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3445555555444443221 2333456677888888888888888888888544222 134556677778888
Q ss_pred CChHHHHHHHHHHh
Q 045024 613 GKYDLALSMARNLA 626 (1173)
Q Consensus 613 g~~~eA~~~~~~aL 626 (1173)
|+.+..+...=+++
T Consensus 232 ~~~~~~l~~~leLl 245 (247)
T PF11817_consen 232 GDVEDYLTTSLELL 245 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 88877766654443
No 384
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.45 E-value=1.5e+02 Score=30.32 Aligned_cols=186 Identities=16% Similarity=0.008 Sum_probs=116.7
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR----FSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
...|+.-..+|..+-....+|++|..+|..--..+ ..+...+.+|..++. ..++...|++.|..+-+ .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 35678888899888776667999999888754322 345666677766553 13578889999998875 456777
Q ss_pred HHHHHHHHHHC-----C--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 045024 95 GEALCELLEHG-----G--KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TSPHLWEA 165 (1173)
Q Consensus 95 ~~~La~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~ 165 (1173)
-..+|.++..- + +..+|.+++.++-... +..+-+.|...|+.-. ++ .....| ..+ ..
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p---~~ 173 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP---LD 173 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC---cc
Confidence 77777666432 2 3678899998886654 4445555555544321 11 112233 111 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhh
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML----GNFRKGVEQFQLALKI 223 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~ 223 (1173)
.+..+.-..+.+.|.+.--++-+++ ++.+.-++.+.|..- .+-++|..+-.++.++
T Consensus 174 ~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 174 RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3444555678888888888887764 455555666665431 3456777777777665
No 385
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=67.14 E-value=2.2e+02 Score=32.08 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS-GEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
++|+..-.-...+-|..|+++-.++...++ ..+. .-..+++-..+ +...-.-....+-.+++...+.++
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~-~sR~---------~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA 282 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQ-ESRR---------PARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHH-Hhhh---------hhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHH
Confidence 577777777778888888888777777666 2211 11111111000 000001111222345666666666
Q ss_pred HhhC-CCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 045024 119 SDKS-PRAFWAFRRLGYLQLH-----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL--D 190 (1173)
Q Consensus 119 l~~~-p~~~~a~~~la~~~~~-----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 190 (1173)
.... |.-....-.++.++.. .-+|..-..+|+-.....|+ +.+-.+.+....+..-.+.++...+..... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 5443 2222222223333322 34666767777766666664 444455566665555566677666665543 1
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 191 DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 191 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
.+....+-..|.++.++|+.++|...|++++.+.++..+..+
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 233445566788888888888888888888888777665543
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.82 E-value=35 Score=29.77 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHhhh
Q 045024 571 LARSLSRAGNALDAVRECESLERQGMLDAEVLQ---VYAFSLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 571 La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~---~la~a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
-|.-+....+.++|+..++++++..++.++-+. .+..+|...|+|.+.+++--+-++.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455778899999999999998888776444 4557888999999988877665553
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=65.45 E-value=9.9 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
++..+|.+... .++|++|+..|++++++
T Consensus 3 v~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 45566666666 66666666666666654
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.61 E-value=2.3e+02 Score=31.27 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 520 HYPESHNLYGLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~~~~A~~~~~ 546 (1173)
.+|..+..+|..+.+.|++.+|+.+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 488899999999999999988888875
No 389
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.96 E-value=21 Score=26.05 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=3.5
Q ss_pred cCCHHHHHHH
Q 045024 71 SIDTQRAIKC 80 (1173)
Q Consensus 71 ~g~~~eA~~~ 80 (1173)
.|++++|+..
T Consensus 14 ~~ky~~A~~~ 23 (36)
T PF07720_consen 14 KGKYDEAIHF 23 (36)
T ss_dssp TT-HHHHHHH
T ss_pred HhhHHHHHHH
Confidence 3333333333
No 390
>PF12854 PPR_1: PPR repeat
Probab=63.95 E-value=13 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 045024 567 ISINLARSLSRAGNALDAVRECES 590 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~ 590 (1173)
+|..+...+.+.|+.++|.+.+++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 444455555555555555554443
No 391
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.58 E-value=67 Score=35.06 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH------HHcCCHHHHHHH
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHG--GKESLEVVVCREASDKSPRAFWAFRRLGYLQ------LHHKKWSEAVQS 148 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~------~~~g~~~~A~~~ 148 (1173)
-......+++.+|++-..|...-.++... .++..-+...+++++.++.+.-.|...-.+. ..-.++..-.++
T Consensus 93 eld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ey 172 (328)
T COG5536 93 ELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEY 172 (328)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHh
Confidence 34445555555555555554444444332 3355555555556666555543332221111 222233333444
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 149 LQHAIRGYPTSPHLWEAL---GLAYHRLGM------FSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 149 l~~al~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
-..++..++.|..+|... -......|+ +++-+++.-.++-.+|++..+|..+
T Consensus 173 tt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 173 TTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 455555666666655544 222222333 3444555566666677776666543
No 392
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=62.57 E-value=2.7e+02 Score=31.49 Aligned_cols=185 Identities=13% Similarity=0.002 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh----CC--CChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045024 422 AHIGKLYGEVGEKKLARQAFDSARSI----DP--SLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKL 495 (1173)
Q Consensus 422 ~~Lg~~y~~~g~~e~A~~~f~~al~~----~P--~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l 495 (1173)
..+..+|...++|.+|+......++. +. .-.+..+. -..+|....+..+|...+..|-..... +
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~ll-ESK~y~~l~Nl~KakasLTsART~Ana---------i 201 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLL-ESKAYHALRNLPKAKASLTSARTTANA---------I 201 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhh-hhHHHHHHhcchhHHHHHHHHHHhhcc---------c
Confidence 46788899999999998877665542 22 22333333 355677777777777766655443110 0
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 045024 496 AKLSGHLSSSQVFGAIQQAIQRGPH-Y-PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLAR 573 (1173)
Q Consensus 496 ~~~~g~~~~~~A~~~l~~al~~~P~-~-~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~ 573 (1173)
..|. - ...=..-|.++....+|..|-.+|-.|++-+....+. ..-..++-.+--
T Consensus 202 ---------------------YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~---v~A~~sLKYMlL 257 (411)
T KOG1463|consen 202 ---------------------YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD---VKALTSLKYMLL 257 (411)
T ss_pred ---------------------ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCc---HHHHHHHHHHHH
Confidence 0011 0 1111234666666788899988888886544432221 122223333334
Q ss_pred HHHhcCCHHHHHHHH--HHHHHcCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHhhhccccccchhhhhHHHHHHHH
Q 045024 574 SLSRAGNALDAVREC--ESLERQGMLDAEVLQVYAFSLWQL--GKYDLALSMARNLASSVSAMEQSSAAASVSFICRLL 648 (1173)
Q Consensus 574 ~~~~~g~~~eAi~~~--~~~~~~~p~~~~~~~~la~a~~~~--g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~ 648 (1173)
+-...+..++--... ..+++....+.+++..++.++.+. .+|+.|+..|+.=+..+| -+..++..++
T Consensus 258 cKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~--------ivr~Hl~~Ly 328 (411)
T KOG1463|consen 258 CKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP--------IVRSHLQSLY 328 (411)
T ss_pred HHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh--------HHHHHHHHHH
Confidence 444556666544444 334555566677888888887754 578888888888777444 5555554443
No 393
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=62.23 E-value=3.7 Score=43.84 Aligned_cols=13 Identities=46% Similarity=0.928 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhcc
Q 045024 949 LQDEYVRCLELKT 961 (1173)
Q Consensus 949 ~~~~~~~~~~~~~ 961 (1173)
-.|||||||||+-
T Consensus 309 KKKEYVKCLENRV 321 (348)
T KOG3584|consen 309 KKKEYVKCLENRV 321 (348)
T ss_pred hHhHHHHHHHhHH
Confidence 3699999999874
No 394
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.07 E-value=11 Score=25.50 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQG 595 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~ 595 (1173)
+|..+-..|.+.|++++|.+.|+++.+.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46667778888888888888888876543
No 395
>PF12854 PPR_1: PPR repeat
Probab=60.21 E-value=15 Score=26.18 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 598 DAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 598 ~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
|...+..+...|.+.|+.++|.+.|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4456778899999999999999999875
No 396
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=59.57 E-value=2.1e+02 Score=29.32 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLE-----HGGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~-----~~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
...|+..+.||..+...+.++++|.+.|..--+-+ ..+..-+.+|..+. ..++...|++.+..+-. .+++.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 45678888999888765788999999988754433 34555566665443 23578899999988765 456777
Q ss_pred HHHHHHHHHH-----cCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 129 FRRLGYLQLH-----HKK--WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 129 ~~~la~~~~~-----~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
-..+|.++.. .++ .++|.+++.++-.++ +..+.+.|...|+.-. ++ +....|..... ...+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~~ 175 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDRA 175 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cchh
Confidence 7778877764 233 688999999987664 5566667776665332 22 22223421111 1234
Q ss_pred HHHHHcCChHHHHHHHHHHHhhc
Q 045024 202 NIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
..+.-..+.++|.++--++-+++
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC
Confidence 45556678899999888887764
No 397
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.55 E-value=3.5e+02 Score=31.43 Aligned_cols=123 Identities=14% Similarity=0.035 Sum_probs=74.6
Q ss_pred ccCcHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-----CCCCH-HHHHHHH
Q 045024 35 NSESKEKAAEHFVIAAKL-NPQ--------NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL-----SPDDS-VSGEALC 99 (1173)
Q Consensus 35 ~~~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~-----~p~~~-~a~~~La 99 (1173)
+.+ +.+|...-+..+.. .-. .+..|+.+..+|.. .|+...-...+...+.. +.... .....+-
T Consensus 139 ~K~-~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~-~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 139 QKE-YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYEL-EGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred hHH-HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 344 88888776665521 111 24567777777777 77765555554444332 11111 2245566
Q ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 100 ELLEHGGKESLEVVVCREASDK--SPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~--~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
+.|...+.|+.|.....+..-- ..+ .....+.+|.+..-+++|..|.+++-+++...|.+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6777777788877776665311 111 24456677888888888888888888888888863
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.09 E-value=31 Score=38.25 Aligned_cols=61 Identities=20% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
|..+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~ 61 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE 61 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444444333223344444444433
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.86 E-value=18 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHh
Q 045024 432 GEKKLARQAFDSARSIDPSLALPWAGM 458 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~~~a~~~l 458 (1173)
|+++.|...|++++...|.++..|...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 567888999999999999888888773
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.76 E-value=3e+02 Score=30.36 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=41.9
Q ss_pred CCCChHHHHHHHH-HHHHcCChHHHHHHHHHHHhh----cCC----------CHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 190 DDTSIFPLLESGN-IFLMLGNFRKGVEQFQLALKI----SSE----------NVSAHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 190 ~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
.|.....+...+. .|...|+...|...+....+. +|+ ..+ ..+....++..-+ .+ +
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~P-llnF~~lLl~t~e----~~----~ 206 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYP-LLNFLQLLLLTCE----RD----N 206 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-H-HHHHHHHHHHHHH----HT-----
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCc-hHHHHHHHHHHHh----cC----c
Confidence 4445555554443 366789999999887776655 332 222 1222222222111 01 1
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHH
Q 045024 255 ASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTY 289 (1173)
Q Consensus 255 ~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 289 (1173)
...|....+.+.......+........+|+.+..+
T Consensus 207 ~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 207 LPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 23455555555555545555555666666666543
No 401
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=56.88 E-value=23 Score=24.51 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQG 595 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~ 595 (1173)
+|..+...|.+.|++++|.+.|.++.+.+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 35667777888888888888888877654
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=56.39 E-value=32 Score=38.10 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 42 AAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 42 A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
|+.+|.+|+.+.|.+...+..+|.++.. .|+.-.|+-+|-|++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6778888888999998999999999888 8888888888888886654456677777777666
No 403
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.32 E-value=9.9e+02 Score=35.99 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHH---HhcCC----HHHHHHHHHHHHhcCCchHHH
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ---ASESL----VDDAFESCLRAVQILPLAEFQ 489 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~---~~~g~----~~eA~~~~~~al~~~p~~~~~ 489 (1173)
.++.+...|....+.|+.++|-..|..|++++-..+.+|...+-..+ .+.+. -..|+..|-++....-.....
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaR 2890 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKAR 2890 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhH
Confidence 45677788999999999999999999999999888999987332222 22222 244666666666665444444
Q ss_pred HHHHHHH
Q 045024 490 IGLAKLA 496 (1173)
Q Consensus 490 ~~la~l~ 496 (1173)
-.++.+.
T Consensus 2891 k~iakvL 2897 (3550)
T KOG0889|consen 2891 KLIAKVL 2897 (3550)
T ss_pred HHHHHHH
Confidence 4444333
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.77 E-value=1.6e+02 Score=34.52 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=32.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHccCCHHHHHHHHHHHHhh
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV--AFRYL--GHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~--a~~~l--g~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
...+..++..++ |..|...|......-|.... .+..+ |..++. .-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~-y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYD-YGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 344555566665 77777777776654232222 22222 333444 56666777776665543
No 405
>PF13041 PPR_2: PPR repeat family
Probab=55.40 E-value=49 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3445666666666666666666666666654
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.28 E-value=26 Score=23.90 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHH
Q 045024 74 TQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
.+.|...|++++...|.++..|.
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHH
Confidence 33344444444444444433333
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.64 E-value=1e+02 Score=33.88 Aligned_cols=60 Identities=22% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
.+...+..|...|.+.+|++..++++..+|-+...+..+..++..+|+--.++..|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456777788888888888888888888888888888888888888777777777653
No 408
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.85 E-value=32 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGM 596 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p 596 (1173)
.|..+...+.+.|+++.|.+.++.+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 466777788888888888888888876553
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.11 E-value=2.9e+02 Score=32.33 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH--LWEALGLA--YHRLGMFSAAIKSYGRAIELDDT---SIFPLLESG 201 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la 201 (1173)
....+.-.++.++|..|...+......-|.+.. .+..+... +...-++++|.+.++..+...-. ....+..+.
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~ 213 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELV 213 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 345667778999999999999998885343333 44444444 45688999999999998765221 111222222
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
.+. ++...+........... ...+.+...+...+..-...|+|+.|...+-.+++.+..
T Consensus 214 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 214 EVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 221 22222222111111111 112333344444555566788899888888777776554
No 410
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=4.4e+02 Score=30.67 Aligned_cols=123 Identities=13% Similarity=-0.025 Sum_probs=85.8
Q ss_pred cCCHHHHHHHHHHHHhh-CCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C-CcHHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSL-SPDD--------SVSGEALCELLEHGGKESLEVVVCREASDKS-----P-RAFWAFRRLGYL 135 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~-~p~~--------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~a~~~la~~ 135 (1173)
++++.+|.+.-+..+.. .-.+ ...|+.+..+|...|+...-...+...+... . ......+.+-..
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 68888888877765532 1111 2337777788888888666666655544331 1 234556677788
Q ss_pred HHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 136 QLHHKKWSEAVQSLQHAIRG--YP--TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~--~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
|...+.|+.|.....+..-- .. ......+.+|.+-.-+++|..|.++|-+++...|++
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88899999998887776411 11 224567788999999999999999999999999974
No 411
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.14 E-value=7.2e+02 Score=33.13 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHH
Q 045024 565 QDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFI 644 (1173)
Q Consensus 565 ~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~l 644 (1173)
..++...|.-+...+.+++|.-.|+..-+. ..+ -.+|...|++.+|+....++-... .........|
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----ekA----l~a~~~~~dWr~~l~~a~ql~~~~-----de~~~~a~~L 1005 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERCGKL----EKA----LKAYKECGDWREALSLAAQLSEGK-----DELVILAEEL 1005 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhccH----HHH----HHHHHHhccHHHHHHHHHhhcCCH-----HHHHHHHHHH
Confidence 345555555566666666665555544111 111 233445555555555555443210 1111112567
Q ss_pred HHHHHHhcChhhhhHHhhhCCCCc
Q 045024 645 CRLLYHISGLDSTINSILKMPKGL 668 (1173)
Q Consensus 645 a~l~~~~g~~~~A~~~l~~~p~~~ 668 (1173)
+.-+-..+++-+|.+++..+-.+.
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcCH
Confidence 777788888888887777766665
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.03 E-value=22 Score=41.41 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGM---------LDAEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p---------~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
+...|.+++.-.|+|..|++.++.+ +.+. -....++.+|.+|..+++|.+|+..|..++.-..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999998876 2221 2244668999999999999999999999876433
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.65 E-value=7.2e+02 Score=32.40 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
...+...+.++.++|+.++|+..|-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 34555667777777777777777766554
No 414
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=47.96 E-value=5.4e+02 Score=30.51 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=84.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh------
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKW-------SEAVQSLQHAIRG------ 155 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~-------~~A~~~l~~al~~------ 155 (1173)
...+|+..+..|+|+.|...|+.+.+..-++ ..+.-..|.+.+..+.. ++...+++.++..
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 5567778888888888888887776543322 11222233333333321 1333333333221
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 156 -----YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL--DDT-----SIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 156 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
...........+.++...|.+.+|...+-+.... ..+ ..-.+-..|.++ ..+..
T Consensus 291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~ 356 (414)
T PF12739_consen 291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRS 356 (414)
T ss_pred cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccccc
Confidence 1122345556677777788887777666665544 211 112222333333 11111
Q ss_pred -cC-CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 224 -SS-ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 224 -~p-~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.| ....-....+.-++--|..+...|....|...|..|...+.
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 11 11111334555566667788888889999999999988776
No 415
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=47.96 E-value=2.7e+02 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
+.....+.+++..+..++.++..+..+..+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHH
Confidence 3344444444444444333333333444333
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.55 E-value=3.7e+02 Score=28.57 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.+.+..++++...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|+
T Consensus 12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 33444444444444444444444444444444444445555554444444444443
No 417
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=47.28 E-value=4.7e+02 Score=29.63 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 140 KKWSEAVQSLQHAIRGY-PTSPHLWEALGLAYHR-----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 140 g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
+-.+++...+.++.... |.-....-.++.++.. .-++..-...|+....+.|+ +.+-.+.+....+..-.+.+
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhH
Confidence 34578888888888654 4434444445555443 34667777777777777766 44455666666666667777
Q ss_pred HHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 045024 214 VEQFQLALKI--SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDAC 262 (1173)
Q Consensus 214 ~~~~~~al~~--~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al 262 (1173)
+...+..... -......+-..+..+.++|+..++...|+.|+..-..+.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 8777766554 223344666788999999999999999999988754443
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.19 E-value=2.8e+02 Score=26.71 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=19.8
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 412 QLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444 (1173)
Q Consensus 412 ~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~a 444 (1173)
.+....+..|...|..+...|++++|.++|+.+
T Consensus 93 ~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 93 GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344455666666666666666666666666654
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.94 E-value=99 Score=35.64 Aligned_cols=97 Identities=18% Similarity=0.046 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--
Q 045024 523 ESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGM---L-- 597 (1173)
Q Consensus 523 ~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p---~-- 597 (1173)
.++.-+|.-|...|+++.|++.|-++...... ..+....+.++..+-.-+|+|..-..+-.++.. .| .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s-t~~~~~~~ 223 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS------AKHVINMCLNLILVSIYMGNWGHVLSYISKAES-TPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh-CchhhhhH
Confidence 46788999999999999999999998655433 345566788888888999998877776666632 22 1
Q ss_pred ----CHHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 045024 598 ----DAEVLQVYAFSLWQLGKYDLALSMARNLA 626 (1173)
Q Consensus 598 ----~~~~~~~la~a~~~~g~~~eA~~~~~~aL 626 (1173)
++.....-|.+.+.+++|..|...|-.+.
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12233456778888889999988887653
No 420
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.57 E-value=5.8e+02 Score=30.23 Aligned_cols=28 Identities=14% Similarity=-0.062 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHhC
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKLN 53 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~~ 53 (1173)
.-.+|...+-.++ |+-|...|+.+.+..
T Consensus 211 ~R~LAD~aFml~D-y~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 211 MRRLADLAFMLRD-YELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHcc-HHHHHHHHHHHHHHH
Confidence 3456788877776 888888888877543
No 421
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.52 E-value=3.6e+02 Score=29.75 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHH
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHH--KKWSEAVQSLQHAIRGYPTSPHLWEALGLAY------HRLGMFSAA 179 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~la~~~------~~~g~~~~A 179 (1173)
.+.-+..+..+++.+|.+...|...-.++... .++..-+...+++++.++.|...|...-.+. ....++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45667778999999999999988877777655 6788888999999999999877765543333 333444555
Q ss_pred HHHHHHHHHhCCCChHHHHHH---HHHHHHcCC------hHHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 180 IKSYGRAIELDDTSIFPLLES---GNIFLMLGN------FRKGVEQFQLALKISSENVSAHYGL 234 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~l---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~l 234 (1173)
.++-..++..++.+..+|... -......|+ +++-+++.-..+-.+|++..++..+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 666667788899998888766 333333444 3555667777777889988877443
No 422
>PRK12798 chemotaxis protein; Reviewed
Probab=44.30 E-value=5.9e+02 Score=29.90 Aligned_cols=191 Identities=14% Similarity=-0.026 Sum_probs=115.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHH-HH
Q 045024 28 LGLHLWENSESKEKAAEHFVIAAKLNPQ-NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL-SPDDSVSGEALCELL-EH 104 (1173)
Q Consensus 28 lg~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~-~p~~~~a~~~La~~~-~~ 104 (1173)
-+.+|.-.|+++. . ++..+..++. +.+.-..-|..-+- .|+-++|.+.+...-.. .|.....+..|.... ..
T Consensus 86 Aa~iy~lSGGnP~-v---lr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~ 160 (421)
T PRK12798 86 AALIYLLSGGNPA-T---LRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMV 160 (421)
T ss_pred HHHhhHhcCCCHH-H---HHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhc
Confidence 3456666777543 2 3333334432 33344444444444 58888888887664322 133333455554443 55
Q ss_pred CCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHH
Q 045024 105 GGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH---LWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~la~~~~~~g~~~~ 178 (1173)
..+..+|+..|+.+-=..|.. ..++..-..+....|+.+++..+-.+.+.....++. .+......+.+.++-..
T Consensus 161 ~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 161 ATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred ccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc
Confidence 668889999999887777864 234555555667888888888888888776655433 33344444444443222
Q ss_pred HHHHHHHHHHh-CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 179 AIKSYGRAIEL-DDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 179 A~~~~~~al~~-~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
- ..+...+.. +|. ....|..++..-...|+.+-|.-.-++++.+.
T Consensus 241 ~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 241 D-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred H-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 2 234455543 444 35677788888888888888888888887765
No 423
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.06 E-value=1.4e+02 Score=31.67 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=41.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
.-+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445566667777777776777777666666666777777777777777776666666653
No 424
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.66 E-value=2e+02 Score=36.32 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL-SPDDSVSGEALCELLEHGGKESLEVVVCR 116 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~-~p~~~~a~~~La~~~~~~g~~~~A~~~~~ 116 (1173)
|+-|+..-+.- ..+++. ...+...|..++. .|++++|...|-+.+.. +|...--. +.......+-..+++
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~-Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYG-KGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRIKNLTSYLE 421 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHHHHHHHHHH
Confidence 66666544431 222222 4567778888888 99999999999888764 23221111 122222333344455
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 117 EASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL--WEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 117 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
...+..-.+..-...|-.+|.++++.+.-.+..++ .+..... .-..-.++.+.+-+++|.-.-.+.- .+.
T Consensus 422 ~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he 493 (933)
T KOG2114|consen 422 ALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFK----KHE 493 (933)
T ss_pred HHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc----cCH
Confidence 55554444445555677888888887765555443 2311100 0111233344444444444333321 112
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 195 FPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
..+-.++...|+|++|+.++..+
T Consensus 494 ---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 494 ---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred ---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 22344567789999999988763
No 425
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=42.87 E-value=35 Score=38.46 Aligned_cols=74 Identities=19% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
.++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+..+-
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 35555556666666666555555555666666666666666666666666666666666666655444444433
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.54 E-value=1.5e+02 Score=32.37 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.....+|..|+..|++++|.+.|+.+...... ....+..+..++...|+.+..+...-++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567888888888888888888888654322 2355667788888888888777665443
No 427
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.53 E-value=38 Score=39.59 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-------h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASD-------K-SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~-------~-~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
...|.+++.-.|||..|++.++.+-- . .+-+...++.+|-+|+.+++|.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888887765411 1 11134455666666666666666666666554
No 428
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.03 E-value=36 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045024 421 WAHIGKLYGEVGEKKLARQAFDSARS 446 (1173)
Q Consensus 421 ~~~Lg~~y~~~g~~e~A~~~f~~al~ 446 (1173)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666666666666666665543
No 429
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=41.66 E-value=5e+02 Score=28.30 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIEL-DD--TSIFPLLESGNIFLM-LGNFRKGVEQFQL 219 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p--~~~~a~~~la~~~~~-~g~~~~A~~~~~~ 219 (1173)
...++.+..+.|+|++.+....++++. +| -+.+-...+..+|-. .|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 345667777777888877777777775 43 244455555555543 4666666666555
No 430
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=40.20 E-value=56 Score=36.93 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
...+++.+-.+.+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|.+......+..+
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 4455788888999999999988888888888999999999999999999999999999999999987655444333
No 431
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=39.61 E-value=5.4e+02 Score=28.06 Aligned_cols=58 Identities=7% Similarity=-0.022 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-CChhHHHHhHHHHHH-hcCCHHHHHHHHHH
Q 045024 421 WAHIGKLYGEVGEKKLARQAFDSARSI-DP-SLALPWAGMSADVQA-SESLVDDAFESCLR 478 (1173)
Q Consensus 421 ~~~Lg~~y~~~g~~e~A~~~f~~al~~-~P-~~~~a~~~l~a~~~~-~~g~~~eA~~~~~~ 478 (1173)
...++.+..+.++|++.+.+..++++. +| +...--.+++..+|- ..|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 456788888999999999999999887 54 332222333443443 34555666665554
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.27 E-value=1.8e+02 Score=35.99 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhhCCCC-hhHHHHhHHHHH---------HhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCC
Q 045024 432 GEKKLARQAFDSARSIDPSL-ALPWAGMSADVQ---------ASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGH 501 (1173)
Q Consensus 432 g~~e~A~~~f~~al~~~P~~-~~a~~~l~a~~~---------~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~ 501 (1173)
|+-++|+...-.+++..... ++.+. +.|.+| ...+..+.|+++|+++++..|....-..++.+....|.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~C-l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYC-LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceee-eechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh
Confidence 55666666665555543222 22221 133333 23445666777888888877766555566666555554
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 502 LSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 502 ~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~ 546 (1173)
.. +...+ -...-..++.+..+.|..+.-.++++
T Consensus 336 ~F--------ens~E----lq~IgmkLn~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 336 HF--------ENSLE----LQQIGMKLNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred hc--------cchHH----HHHHHHHHHHHhhccchHHHHHHHHh
Confidence 21 00000 01122445556666666665555554
No 433
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=36.91 E-value=4e+02 Score=25.77 Aligned_cols=46 Identities=24% Similarity=0.230 Sum_probs=35.1
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..+. +...+.+++..+..++.++..+..+...|.. . +..+.+..++
T Consensus 19 ~~~~-~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~-~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNL-LEELIPYLESALKLNSENPALQTKLIELYAK-Y-DPQKEIERLD 64 (140)
T ss_pred hCCc-HHHHHHHHHHHHccCccchhHHHHHHHHHHH-H-CHHHHHHHHH
Confidence 3444 8899999999998888888888889888887 4 4455556555
No 434
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=36.38 E-value=2.5e+02 Score=24.44 Aligned_cols=46 Identities=11% Similarity=-0.122 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWK 280 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~ 280 (1173)
|..+...+-.+...|++.+|+.+|.++++.+.+.....|+......
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 4445555556667888999999999999999998888777654333
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.76 E-value=7e+02 Score=28.26 Aligned_cols=114 Identities=12% Similarity=-0.018 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE 600 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~ 600 (1173)
-.+++...|..|.+.||-+.|.+.+++..+..-...- .-+..-....+|-.|..+.-..+-++..+.+++.+-+-..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~---kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH---KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc---chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 4568899999999999999999999977543211111 2223334456777777776677888888888877765421
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchh
Q 045024 601 ---VLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSA 637 (1173)
Q Consensus 601 ---~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~ 637 (1173)
.-..-|.-....-++.+|...|-..+....+.+...-
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y 219 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSY 219 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccH
Confidence 1233466667778899999999888776665544433
No 436
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=35.64 E-value=1.7e+02 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 460 ADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGL 530 (1173)
Q Consensus 460 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~ 530 (1173)
+.-+.+.|++++|+..|++ |++.+.+++...|+++.-......
T Consensus 13 AVe~D~~gr~~eAi~~Y~~----------------------------aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 13 AVKAEKEGNAEDAITNYKK----------------------------AIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHhcCCHHHHHHHHHH----------------------------HHHHHHHHHHhCCChHHHHHHHHH
Confidence 4455678888988888774 555778888888887775444433
No 437
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.04 E-value=1.1e+03 Score=30.30 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChH
Q 045024 426 KLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSS 505 (1173)
Q Consensus 426 ~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~ 505 (1173)
.+..+...|+-|+..-+. ...+++...-.....|.-+...|++++|...|-+.+..-..+..-..+-... . ..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq----~--Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQ----R--IK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHH----H--HH
Confidence 444555566666554432 2233333222222234455577888888888777766422111111000000 0 00
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 045024 506 QVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAV 585 (1173)
Q Consensus 506 ~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi 585 (1173)
+-...++.+.+..-.+..--..|-.+|.+.++.++=.+..++. +.. + .+.+ .-..-.+..+.+-.++|.
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~-------~~g-~--~~fd-~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC-------DKG-E--WFFD-VETALEILRKSNYLDEAE 483 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC-------CCc-c--eeee-HHHHHHHHHHhChHHHHH
Confidence 1112333333333334444456778888888887766655432 100 0 0000 111233445556666666
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 586 RECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 586 ~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~a 625 (1173)
-...+.. .++.. +-..+...|+|++|+.+++.+
T Consensus 484 ~LA~k~~----~he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFK----KHEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhc----cCHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 5444432 12322 245577889999999998865
No 438
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=34.97 E-value=6.5e+02 Score=27.66 Aligned_cols=164 Identities=15% Similarity=0.051 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHH-------
Q 045024 74 TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWS------- 143 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~------- 143 (1173)
..+|+..+...+......+.+....|.++-..| ..+...+.++.. .+|-- ......+..+-...+--.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~ 142 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPY 142 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCcc
Confidence 356777777777666666677777777777777 566666666666 44432 111112222211110000
Q ss_pred -----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Q 045024 144 -----------EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK 212 (1173)
Q Consensus 144 -----------~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 212 (1173)
..+.-++..+ ++++.+...-..+..+.+.-..++|+..+-..+..+ +.-.....|.++-+++ -..
T Consensus 143 ~SvdPa~p~~~ssv~~lr~~l-ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~-s~~ 218 (289)
T KOG0567|consen 143 ISVDPAPPANLSSVHELRAEL-LDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQ-SPA 218 (289)
T ss_pred ccCCCCCccccccHHHHHHHH-HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhcc-chh
Confidence 0011111111 223334444456666666666688888887777654 3444445555555544 346
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 213 GVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 213 A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
|+..+.+.+.....++-.+..-+.++...++
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 8888888888878888777666666666555
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.68 E-value=1.5e+02 Score=29.28 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
.+.....+.-.+..|++.-|.+..+.++..+|++..+....+.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445566666677888888888888888888888887777777777766
No 440
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.09 E-value=1.6e+02 Score=34.34 Aligned_cols=109 Identities=17% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV-QSLQHAIR 154 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~-~~l~~al~ 154 (1173)
+|+..++.++..+|.+......+..+|...|-...|...|...--..-..-..-+.+..-....|.+..+. ..++.+..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSYG 184 (1173)
Q Consensus 155 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 184 (1173)
....+..-.......-++.|.|.+-.+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=33.77 E-value=1.7e+02 Score=28.24 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCChHHHH
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD--AEVLQVYAFSLWQLGKYDLAL 619 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~--~~~~~~la~a~~~~g~~~eA~ 619 (1173)
...++++++.+...+.-..++++..++...+... +++.+.|.-+...+... ...+...|..+...|++.+|.
T Consensus 46 ~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 46 LTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555444433332233677877888777642 44667788887665444 445566788899999999999
Q ss_pred HHHHH
Q 045024 620 SMARN 624 (1173)
Q Consensus 620 ~~~~~ 624 (1173)
++|+.
T Consensus 120 ~iy~~ 124 (125)
T smart00777 120 EVYQL 124 (125)
T ss_pred HHHHc
Confidence 99873
No 442
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.61 E-value=1.1e+03 Score=29.87 Aligned_cols=210 Identities=10% Similarity=-0.075 Sum_probs=114.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChh---HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhC
Q 045024 424 IGKLYGEVGEKKLARQAFDSARSIDPSLAL---PWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSG 500 (1173)
Q Consensus 424 Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~---a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g 500 (1173)
+|..-....+.+.|...+.+.....+-+.. .....++......+...+|...+..+.....+.+.......+....+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 344444666788888888876554432222 12222332222222266777777766544334444444444444555
Q ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 501 HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 501 ~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
+. +.....+..+-....+.....+-+|..+...|+.++|...|+++. .. .. -|..|+.-. .|.
T Consensus 327 dw--~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a---~~----~~------fYG~LAa~~--Lg~ 389 (644)
T PRK11619 327 DR--RGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM---QQ----RG------FYPMVAAQR--LGE 389 (644)
T ss_pred CH--HHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh---cC----CC------cHHHHHHHH--cCC
Confidence 53 344444444433333466778888888888899999988888762 11 01 233344322 232
Q ss_pred H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHhcChhhhhH
Q 045024 581 A-LDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTIN 659 (1173)
Q Consensus 581 ~-~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~~~~g~~~~A~~ 659 (1173)
. .-...........-+.. ..+..+..+...|+..+|...+..++...+ +.....++.+....|.++.+..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~-------~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 390 EYPLKIDKAPKPDSALTQG--PEMARVRELMYWNMDNTARSEWANLVASRS-------KTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred CCCCCCCCCCchhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 1 00000000000000111 234567888899999999999998887321 3456677777778887777663
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.34 E-value=2.2e+02 Score=32.99 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CCHHH
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPR---AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY----P----TSPHL 162 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~----p----~~~~~ 162 (1173)
++..+|.-|...|+.+.|++.|.++-..-.. ....+.++..+-...|+|.....+..++.+.- . -.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4667777777778877777777775433222 24556666667777777777666666665431 0 11234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
...-|.+...+++|..|.+.|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555666666678888888876543
No 444
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.16 E-value=73 Score=21.79 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045024 421 WAHIGKLYGEVGEKKLARQAFDSARS 446 (1173)
Q Consensus 421 ~~~Lg~~y~~~g~~e~A~~~f~~al~ 446 (1173)
|..+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 445
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.15 E-value=1.3e+02 Score=29.80 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
..+.-.+..|++.-|.++.+.++..+|++..+...++.++.++
T Consensus 75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555544443
No 446
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=31.35 E-value=2.6e+02 Score=26.78 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC--CCCCCCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 525 HNLYGLVCEARSDYQAAVVSYRLARYAISSSS--GTVPNSHF----QDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 525 ~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~p--e~~~~~~~----~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
+..+|+...+.+++-.++-.|++|+.+.+... +..+.... ....-+||..+..+|+.+=.+++++-+-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 56789999999999999999999998876542 21111111 2234468888888888887777776553
No 447
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.02 E-value=7.7e+02 Score=27.36 Aligned_cols=110 Identities=9% Similarity=-0.072 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE 600 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~ 600 (1173)
-.+++.++|..|.+.++.+.+.+...+.++-.-...- .-+..-....+|.+|..+.-.++-++....+++.+-+-..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~---KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL---KIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc---chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 4568899999999999999999998877644222111 2223334456777777766688888888888888765422
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 601 ---VLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 601 ---~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
--...|.-.....++.+|...+-..+......+
T Consensus 191 rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 191 RNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccc
Confidence 113346667777888888888888877555433
No 448
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=30.95 E-value=2.1e+02 Score=27.89 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=71.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHH
Q 045024 463 QASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVC--EARSDYQA 540 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~--~~~g~~~~ 540 (1173)
..-.|..++..+...+....++..+.-+-...+- ++.. .+- -..++...|.++ ...|+...
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNii---------Daa~-C~y-------vv~~LdsIGkiFDis~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNII---------DAAD-CDY-------VVETLDSIGKIFDISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHH---------HH---HHH-------HHHHHHHHGGGS-GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecc---------hhhc-hhH-------HHHHHHHHhhhcCchhhcchHH
Confidence 3457788888888888777776443322222111 0000 000 011222233222 23566666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHH
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLAR-SLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLAL 619 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~-~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~ 619 (1173)
-+..|-+. ...+ -+.++|. ++...|+-+.=-+.+..+.+.+..+++.++.+|.+|-+.|+..+|-
T Consensus 75 Vi~C~~~~----n~~s----------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 75 VIECYAKR----NKLS----------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp HHHHHHHT----T-------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHh----cchH----------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHH
Confidence 66666543 1111 2445543 3456777777777777777666677889999999999999999999
Q ss_pred HHHHHHhh
Q 045024 620 SMARNLAS 627 (1173)
Q Consensus 620 ~~~~~aL~ 627 (1173)
+.++++-+
T Consensus 141 ell~~ACe 148 (161)
T PF09205_consen 141 ELLKEACE 148 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 449
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.93 E-value=2.4e+02 Score=35.07 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=17.3
Q ss_pred cCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 207 LGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 207 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.+++.+|++.-+.+.++.|........+..+
T Consensus 379 And~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 4666777777777766665544333333333
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.51 E-value=3.3e+02 Score=22.87 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 234 LASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 234 la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
.|..+...+-.....|++++|+..|.++++.+.......++
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~ 44 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34455556666667889999999999999998887766544
No 451
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.13 E-value=8.4e+02 Score=27.52 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCC--CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCH
Q 045024 524 SHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTV--PNSHFQDISINLARSLSRAGNALDAVRECESLE--RQGMLDA 599 (1173)
Q Consensus 524 a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~--~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~--~~~p~~~ 599 (1173)
....+|.+|++.++|..|...+.-+ +...+.. +.......+..+|++|.+.++..+|..+..++- ..+..++
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 4468999999999999998887633 2222111 123345567889999999999999988887752 2233454
Q ss_pred HHH----HHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 600 EVL----QVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 600 ~~~----~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
... ...|+++-..+++=||...|-++..
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3456777777787777666665544
No 452
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.89 E-value=99 Score=21.99 Aligned_cols=26 Identities=31% Similarity=0.169 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHH
Q 045024 469 VDDAFESCLRAVQILPLAEFQIGLAK 494 (1173)
Q Consensus 469 ~~eA~~~~~~al~~~p~~~~~~~la~ 494 (1173)
++.|..+|++.+...|.+..++.++.
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 44555555555555555555444443
No 453
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.08 E-value=5.9e+02 Score=28.90 Aligned_cols=109 Identities=6% Similarity=-0.062 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 42 AAEHFVIAAKLNPQNAVAF---RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 42 A~~~~~~al~~~p~~~~a~---~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
+...|+++.+.-|++.... ..-|.+++. .++|.+....|..+-.......+. ..+-.+.-.+-.+...-+.+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~-~~dya~S~~~ldAae~~~KqqqD~----~~~S~~~A~~vGst~vNDNi 114 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALY-ARDYATSLGVLDAAEQRFKQQQDT----QSASTRGAGYVGATMINDNV 114 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHH-hhhHHHhhhHHHHHHHHHhhhhhh----heeccccccchhhhhhccch
Confidence 3455666666555543322 234667777 777777666665443221111000 00000000011111111112
Q ss_pred HhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 119 SDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 119 l~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
.+.+|.. ....+.+|.-|+..+|++.|.-.|+++...
T Consensus 115 ~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 115 RAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred hhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 2222322 234556788888888988888888887653
No 454
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=6.1e+02 Score=28.70 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
.+++...+..|.+.||-+.|.+.+.+..+..-. -......+|..|....-..+-++..+..++...+ .+-. +
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD-WeRr-N 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD-WERR-N 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-hhhh-h
Confidence 567888888888889988888888776654321 1334456666666554445555555555554333 2211 1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 234 LASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 234 la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.-.+| .|-...+..+|.+|...|-+.+..+.
T Consensus 182 RlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 182 RLKVY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 11222 33444445556666555555554443
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.60 E-value=1.4e+03 Score=29.76 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCChHH------
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRG----YPTSPHLWEALGLAYHRLGMF--SAAIKSYGRAIELDDTSIFP------ 196 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a------ 196 (1173)
+..|+.+|...|+.++|++.+.+...- ++.....+-.....+...+.. +-..++-.-.++.+|....-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 667889999999999999999988773 333334444444444555554 55555555555555542100
Q ss_pred -----HH--HHHHHHHHcCChHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 045024 197 -----LL--ESGNIFLMLGNFRKGVEQFQLALKISSE-NVSAHYGLASGLLG 240 (1173)
Q Consensus 197 -----~~--~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~ 240 (1173)
-. ....-|......+-++.+++.++..... +...+..++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01 1122345667778888888888876554 34444444444443
No 456
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.63 E-value=1.3e+02 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 045024 420 AWAHIGKLYGEVGEKKLARQAFDSARS 446 (1173)
Q Consensus 420 a~~~Lg~~y~~~g~~e~A~~~f~~al~ 446 (1173)
.|..+...+.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555666666666666655443
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.80 E-value=7.6e+02 Score=25.94 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC-ELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La-~~~~~~g~~~~A~~~~~~a 118 (1173)
+..+-+.... .||++.|.++|--.+...+-+....-.+| .++.+.+.-....+.++..
T Consensus 44 L~~lLh~~ll-r~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 44 LTDLLHLCLL-RGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3344444455 67777777777776666555554433333 3344444333333444333
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=9.2e+02 Score=26.81 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---SPH---LWEALGLAYHRLGMFSAAIKSYGRAIELDDTS---IFP 196 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a 196 (1173)
.+++.++|..|.+.++.+.+.+...+.++..-. ..+ .-..+|.+|..+.-.++.++..+..++...+. ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 678899999999999999999888877654321 122 33456666666655666677666666655431 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
-...|...+...++.+|-..+-..+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2234555666778888888877766543
No 459
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.54 E-value=9.7e+02 Score=27.06 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC------HHHHHHHHHHHHHcCChHHHHHHHHHH--hhhcccc
Q 045024 562 SHFQDISINLARSLSRAGNALDAVRECESLERQG-MLD------AEVLQVYAFSLWQLGKYDLALSMARNL--ASSVSAM 632 (1173)
Q Consensus 562 ~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~-p~~------~~~~~~la~a~~~~g~~~eA~~~~~~a--L~~~p~~ 632 (1173)
.....+...||.+|.+.+++..|-+.+.-+-..+ +.. ....+.+|++|...|+..+|..+..++ +.... .
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-S 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-c
Confidence 4556788899999999999999998877663222 221 224478999999999999999888776 22222 1
Q ss_pred ccchhhhhHHHHHHHHHHhcChhhhh
Q 045024 633 EQSSAAASVSFICRLLYHISGLDSTI 658 (1173)
Q Consensus 633 ~~~~~~~~~~~la~l~~~~g~~~~A~ 658 (1173)
++.-...-....|+++=..++.-+|+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAA 204 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAA 204 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233456677777777776666
No 460
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=25.70 E-value=7.7e+02 Score=29.85 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHH-hhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 045024 405 HALIRGLQLDVSLADAWAH-IGKLYGEVGEKKLARQAFDSAR-SIDPSLALPWAGMSADVQASESLVDDAFESCLRA 479 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~-Lg~~y~~~g~~e~A~~~f~~al-~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~a 479 (1173)
.++.++-...++...-|.. -+.+..+.|+...|...+.+.- .+.|....-+..+.+++.....++..|.+.+.+.
T Consensus 49 ~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~ 125 (604)
T COG3107 49 FYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKL 125 (604)
T ss_pred HHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhc
Confidence 3444554444444333433 3556677777777777777654 4444443334444455666677777777766654
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=25.46 E-value=1.9e+02 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 045024 404 QHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPS 450 (1173)
Q Consensus 404 ~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~ 450 (1173)
.+..++.+...| ++.++..++.++...|+.++|.....++....|.
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344566667677 7888888899999999999999999998888883
No 462
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.31 E-value=1.3e+03 Score=30.82 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=76.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRA----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS---PHLWEALG 167 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la 167 (1173)
+....+++...+-.+.+.+....|++.-|++ +.....+-.-...+|.+.+|...+- .+|+. -..+..+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHH
Confidence 3344456666777888888888888775543 3344445555677888888876443 35543 23455666
Q ss_pred HHHHHcCCHH------------HHHH-HHHHHHHhCCCCh-HHHHHHHHHHHHcCChHHHH-HHHHHHHhhcCC
Q 045024 168 LAYHRLGMFS------------AAIK-SYGRAIELDDTSI-FPLLESGNIFLMLGNFRKGV-EQFQLALKISSE 226 (1173)
Q Consensus 168 ~~~~~~g~~~------------~A~~-~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 226 (1173)
.++...|+++ +-.. .++.+-+..|... ..+..+=-.+...+++.+|- -.|+.+..+..+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 6667766653 3333 4555555555433 33334444566788888765 457777666543
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.84 E-value=1e+03 Score=27.86 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC-----cHHHHHHH--HHHHHHcCCHHHHHHHHHH
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPR-----AFWAFRRL--GYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l--a~~~~~~g~~~~A~~~l~~ 151 (1173)
.+..++..++|..|...|+.+....+. ....+..+ |..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 455678899999999999999877542 12333334 4455678899999999986
No 464
>PRK09979 putative rho operon leader peptide; Provisional
Probab=24.45 E-value=29 Score=23.25 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=5.5
Q ss_pred hcCcchh
Q 045024 1157 HTNPSCL 1163 (1173)
Q Consensus 1157 ~~~~~~~ 1163 (1173)
.+||||+
T Consensus 10 slnpscr 16 (33)
T PRK09979 10 SLNPSCR 16 (33)
T ss_pred cCCcccc
Confidence 4799996
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.40 E-value=3.8e+02 Score=32.69 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
.+...+..+..+|-.++|++. .++. .-.+ .+..+.|+++.|.+...++ ++..-|-.||.+....
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~-------s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL-------STDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc-------CCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 355666666666666655543 3332 2222 3445678888887766554 5566788888888888
Q ss_pred CCHHHHHHHHHHHHH
Q 045024 174 GMFSAAIKSYGRAIE 188 (1173)
Q Consensus 174 g~~~~A~~~~~~al~ 188 (1173)
|++..|.++|.++..
T Consensus 680 ~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 680 GELPLASECFLRARD 694 (794)
T ss_pred ccchhHHHHHHhhcc
Confidence 888888888887653
No 466
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=24.14 E-value=1.1e+03 Score=26.73 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHH--HHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQ--RAVSLSPD--DSVSGEALCELLEHGGKESLEVVVCR 116 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~--~al~~~p~--~~~a~~~La~~~~~~g~~~~A~~~~~ 116 (1173)
.-++.+.+--...|+..++++..+...+. .|+|..|-.++- +++-.+|+ +..+..+.-..-.-..+++.|++.+.
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqye-CGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~ 191 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQYE-CGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLT 191 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444555455667788899999999999 999998887644 34433333 23333333333355668888888877
Q ss_pred HHHhh---CCCcH-------HHHHH--HHHHHHH-cCCHHHHHHHH------HHHHHhCCCCHHHHHHHHHHHHHc-CCH
Q 045024 117 EASDK---SPRAF-------WAFRR--LGYLQLH-HKKWSEAVQSL------QHAIRGYPTSPHLWEALGLAYHRL-GMF 176 (1173)
Q Consensus 117 ~al~~---~p~~~-------~a~~~--la~~~~~-~g~~~~A~~~l------~~al~~~p~~~~~~~~la~~~~~~-g~~ 176 (1173)
+.-+. .+-.. .+|.. --.+++. -+--+.-++.| -.+++ ...|..+..++.+-.-. .+.
T Consensus 192 rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQ--t~cPhllRYLatAvvtnk~~r 269 (432)
T KOG2758|consen 192 RLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQ--TSCPHLLRYLATAVVTNKRRR 269 (432)
T ss_pred HHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHH--hhCHHHHHHHHHHhhcchHhh
Confidence 76443 22111 11111 1111222 12222222222 12222 23456666666666554 667
Q ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 177 SAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
..+++.+-++++...- ..+.....-.+++-.=++++|...++++-+.-.++.
T Consensus 270 r~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 270 RNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Confidence 7788888888876543 122334445666777889999988888776554444
No 467
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.06 E-value=1.1e+03 Score=27.91 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
..+|..+...++.......|+.|+..+-+|-+.|..
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~ 195 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSL 195 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 467777777788777778888888777776665543
No 468
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=23.55 E-value=7.5e+02 Score=30.17 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 520 HYPESHNLYGLVCEAR--SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~--g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
.+|.++..||++-+.. ..-..++++|.+|+...+..-+ .+....|..+|..+.+.+++.+|+..+.++.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~----n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN----NHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT----T--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc----CCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 5788888888877643 4467789999999877655322 2223467889999999999999999888774
No 469
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=23.10 E-value=2.4e+02 Score=35.40 Aligned_cols=98 Identities=22% Similarity=0.311 Sum_probs=61.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTS----PHLWEALGLAYHR--LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
++..+..+++..+.--|..++.+-|.+ .....+.+.++.. .|++..++...+-++...|....+++..+..|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 455556666666666666666665522 2233444444443 5677777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhhcCCCHHH
Q 045024 207 LGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 207 ~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+.++-|++...-.....|.+..+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Confidence 777777777766666666766543
No 470
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=22.74 E-value=5.8e+02 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.468 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 603 QVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 603 ~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
+..|.-++..|++.+|+..|+.+|...|
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~ 235 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIP 235 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 5577778899999999999999988544
No 471
>PRK09687 putative lyase; Provisional
Probab=21.95 E-value=1.1e+03 Score=26.15 Aligned_cols=200 Identities=7% Similarity=-0.059 Sum_probs=117.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH----HHHHHHHHH
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT----QRAIKCYQR 83 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~----~eA~~~~~~ 83 (1173)
++.+...+ ...+..........+...+. +++...+.+++ ...++.....-+.++.+ .|+. +++...+..
T Consensus 25 ~~~L~~~L--~d~d~~vR~~A~~aL~~~~~--~~~~~~l~~ll--~~~d~~vR~~A~~aLg~-lg~~~~~~~~a~~~L~~ 97 (280)
T PRK09687 25 DDELFRLL--DDHNSLKRISSIRVLQLRGG--QDVFRLAIELC--SSKNPIERDIGADILSQ-LGMAKRCQDNVFNILNN 97 (280)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHhcCc--chHHHHHHHHH--hCCCHHHHHHHHHHHHh-cCCCccchHHHHHHHHH
Confidence 44444555 23345556666666666665 66766666654 33457777777777777 7763 467777776
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 84 AVSLSPDDSVSGEALCELLEHGGK-----ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~~g~-----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
.+..+|+ +.+....+..+-..+. ...+...+..++. ++ ++.+....+..+...++ .+|+..+..+++. .
T Consensus 98 l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~-~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--~ 171 (280)
T PRK09687 98 LALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DK-STNVRFAVAFALSVIND-EAAIPLLINLLKD--P 171 (280)
T ss_pred HHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CC-CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC--C
Confidence 6555554 4554444444433321 1233444433332 22 55666666666666665 6788888888863 3
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 159 SPHLWEALGLAYHRLG-MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
++.+...-+..+...+ +.+.++..+.+++. ..+..+...-+..+.+.|+ ..|+..+-+.++.
T Consensus 172 ~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~ 234 (280)
T PRK09687 172 NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK 234 (280)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC
Confidence 3444444444444432 24577888887773 3355566666666666776 5788888888764
No 472
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=21.95 E-value=42 Score=34.05 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhhhccc--ccccHHHHHHHHhhhcCCCcee-ehhcchhHH
Q 045024 1004 WTAKFNLVLGFVFLWKK--DFFSAEKCLAQACSLAGAESCL-FLCHGTICM 1051 (1173)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1051 (1173)
|..|..|+..-|+.-.. -...|+.-....|+-.+.+.|+ ++|+|+.|-
T Consensus 3 ~~~llal~~~GCast~~~~p~~~~~~~~~e~C~~~ded~CVsl~C~g~~CG 53 (211)
T TIGR02269 3 VAWLLALVFTGCASTAPKSPHAWAEVPHGEECSCTREDRCVSLACAGGQCG 53 (211)
T ss_pred HHHHHHHHHhhcccCCCCCchhhccCcccccccCCCCCceeEEEecCCcce
Confidence 45555555555554422 2345566667789999999998 579999874
No 473
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.93 E-value=1.3e+03 Score=26.93 Aligned_cols=54 Identities=6% Similarity=-0.172 Sum_probs=39.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH--HHCCCHHHHHHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDD-----SVSGEALCELL--EHGGKESLEVVVCRE 117 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~-----~~a~~~La~~~--~~~g~~~~A~~~~~~ 117 (1173)
.+...+. .++|..|...|+.+....++. ...+..++..| ...-++++|.+.+++
T Consensus 136 ~~r~l~n-~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAIN-AFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHH-hcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556778 899999999999999875432 22344555554 567789999999986
No 474
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=21.57 E-value=7.8e+02 Score=24.17 Aligned_cols=52 Identities=21% Similarity=0.182 Sum_probs=23.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 171 HRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 171 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
..+|+-++--+.+....+.+..++..+..+|.+|.+.|+..++-+.+.++-+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444444444444444443334455555555555555555555555555544
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=21.45 E-value=7.3e+02 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
+.|...+.++++++|..+.+...+..+-...|+.+
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 55666667777777776666666666655555553
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=1.6e+03 Score=27.86 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
-|.-.++..+|..+++.|...+..-|.+ ......+..+|..+.+.+.|.+++++|-+.+|.++-....+-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3444555566666666666666554433 2344456666666666666666666666666666666666666666
Q ss_pred HcCChHHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al 221 (1173)
..|.-++|+.......
T Consensus 440 ~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIK 455 (872)
T ss_pred HhcchHHHHHHHHHHH
Confidence 6666666666555544
No 477
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.30 E-value=9.5e+02 Score=29.74 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=49.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQF 217 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 217 (1173)
+....+.+....+.-+.............+..+-..|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3344555555555444433344445555666666777777777777777777766 56667777777777777776666
Q ss_pred H
Q 045024 218 Q 218 (1173)
Q Consensus 218 ~ 218 (1173)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 478
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=20.99 E-value=32 Score=42.23 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH--hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH--HhhCCC-cHHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAV--SLSPD-DSVSGEALCELLEHGGKESLEVVVCREA--SDKSPR-AFWAFRR 131 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al--~~~p~-~~~a~~~La~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~a~~~ 131 (1173)
.....-+..+.. .|++..|...+.+.- .+.|. ........+.+....|+++.|+..+... ..+.+. ....+..
T Consensus 25 ~~~L~Aa~a~l~-~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 25 QLLLLAARALLQ-EGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 344555666777 777777777776654 22222 1233555666677777777777777631 111111 2334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~a 152 (1173)
.+.++...|++-+|...+-..
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ---------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 677777777777776655443
No 479
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=20.79 E-value=1.6e+03 Score=27.62 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 434 KKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQ 513 (1173)
Q Consensus 434 ~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~ 513 (1173)
|..|.++++.++.-+|.- ++...|+.++|+...++...-.+..-.....+.+....+......-...++.
T Consensus 300 yk~a~KYLR~al~s~p~v----------lLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~ 369 (547)
T PF14929_consen 300 YKYAVKYLRLALQSNPPV----------LLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLED 369 (547)
T ss_pred HHHHHHHHHHHhcCCCCe----------EEeccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 455566665555555543 2234678888877777655444433333334444444443334456678888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 045024 514 AIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSR-AGNALDAVRECESL 591 (1173)
Q Consensus 514 al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~-~g~~~eAi~~~~~~ 591 (1173)
..+.+|........+...+.. ...+....+-+.-.+...|. .+ ++..++.++.+ -++++.-.+....+
T Consensus 370 ~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s-~~------iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 370 CLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPS-HP------IWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred HhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCC-ch------HHHHHHHHHHhccccccccHHHHHHH
Confidence 888888877776666666655 55666666644222333332 22 78899999888 55555333344444
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.69 E-value=1.9e+02 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 045024 525 HNLYGLVCEARSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 525 ~~~lg~i~~~~g~~~~A~~~~~kAl~l~~ 553 (1173)
+...|.-....|++++|+..|.+++..+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34556667789999999999999976543
No 481
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.67 E-value=1.3e+03 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCHHH-H--HHHHHHHHHccCcHHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSL-H--LDLGLHLWENSESKEKAAEHFVIAA 50 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~-~--~~lg~~~~~~~~~~~~A~~~~~~al 50 (1173)
+-..|++..+.-|+.... + ..-|.+++..++ |.+....|..+-
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~d-ya~S~~~ldAae 85 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARD-YATSLGVLDAAE 85 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhh-HHHhhhHHHHHH
Confidence 456788888887775432 3 234778777776 877777666553
No 482
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.63 E-value=5.5e+02 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChH
Q 045024 238 LLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMS 276 (1173)
Q Consensus 238 ~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~ 276 (1173)
+...+-.....|++++|+.+|.++++.+.......++..
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 344444455678899999999999999888776666543
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.24 E-value=3.7e+02 Score=25.01 Aligned_cols=48 Identities=8% Similarity=-0.121 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 045024 567 ISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGK 614 (1173)
Q Consensus 567 ~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~ 614 (1173)
....-|-+....|++..|.+...++.+..+.++-.++.-+++-...||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556677788999999999999977766666677766777766665
No 484
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=20.23 E-value=3.4e+02 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 045024 78 IKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP 123 (1173)
Q Consensus 78 ~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p 123 (1173)
++..++.++..| ++.++..++.++...|+.++|....+++....|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444444 345555566666666666666666666666666
No 485
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=20.06 E-value=87 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.0
Q ss_pred hhHHHHHHhhcCchhHHHHHHHHH
Q 045024 1048 TICMEIARQYHDSHFLSLAVRSLT 1071 (1173)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1173)
.+|++|-..|..|+-|...|+.||
T Consensus 25 ~ici~L~e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 25 SICIELCENGVNPEALAAVIKELR 48 (48)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHhC
Confidence 589999999999999999888764
Done!