Query 045024
Match_columns 1173
No_of_seqs 978 out of 4113
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-36 7.9E-41 354.9 50.0 385 27-580 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-36 7.4E-41 355.2 49.5 385 62-614 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-36 5.2E-41 377.6 50.4 491 20-648 82-594 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1E-34 3.5E-39 361.1 46.4 468 5-610 101-595 (597)
5 3fp2_A TPR repeat-containing p 100.0 2.6E-32 8.8E-37 334.4 43.4 452 21-633 24-496 (537)
6 2gw1_A Mitochondrial precursor 100.0 3.9E-31 1.3E-35 321.6 40.4 414 21-605 5-489 (514)
7 2gw1_A Mitochondrial precursor 100.0 3.6E-30 1.2E-34 313.1 48.4 419 56-631 5-481 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 6.1E-30 2.1E-34 306.0 44.3 339 7-457 11-368 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 2.4E-29 8.4E-34 300.7 43.5 331 39-493 8-370 (450)
10 3fp2_A TPR repeat-containing p 100.0 4.5E-29 1.5E-33 305.6 40.6 386 6-487 43-496 (537)
11 4g1t_A Interferon-induced prot 100.0 4.4E-29 1.5E-33 300.8 39.6 386 21-556 50-464 (472)
12 3ieg_A DNAJ homolog subfamily 100.0 2.6E-28 8.8E-33 281.2 43.2 330 21-463 2-350 (359)
13 3ieg_A DNAJ homolog subfamily 100.0 4.3E-27 1.5E-31 270.9 43.4 306 56-485 2-338 (359)
14 4g1t_A Interferon-induced prot 100.0 1.1E-26 3.8E-31 279.7 41.1 385 56-630 50-461 (472)
15 3hym_B Cell division cycle pro 99.9 8.2E-26 2.8E-30 257.3 34.1 271 9-361 9-289 (330)
16 3hym_B Cell division cycle pro 99.9 1.1E-25 3.6E-30 256.4 32.6 310 46-470 11-322 (330)
17 2ooe_A Cleavage stimulation fa 99.9 1.6E-23 5.6E-28 256.5 49.8 449 46-630 2-494 (530)
18 2ooe_A Cleavage stimulation fa 99.9 6.9E-23 2.4E-27 251.0 49.3 427 11-519 2-494 (530)
19 1fch_A Peroxisomal targeting s 99.9 2.4E-25 8.1E-30 258.3 25.2 303 31-447 34-359 (368)
20 2xm6_A Protein corresponding t 99.9 2.8E-22 9.7E-27 243.0 52.8 399 19-600 36-473 (490)
21 2xm6_A Protein corresponding t 99.9 2.2E-22 7.6E-27 243.9 49.9 403 41-630 25-469 (490)
22 1fch_A Peroxisomal targeting s 99.9 1.1E-24 3.9E-29 252.6 28.2 290 7-368 44-356 (368)
23 4eqf_A PEX5-related protein; a 99.9 1.3E-24 4.5E-29 252.3 24.5 249 9-266 48-312 (365)
24 2h6f_A Protein farnesyltransfe 99.9 1.3E-23 4.6E-28 244.1 27.7 266 15-288 90-365 (382)
25 4eqf_A PEX5-related protein; a 99.9 1.9E-23 6.3E-28 242.6 24.7 221 5-227 82-314 (365)
26 3cv0_A Peroxisome targeting si 99.9 1.7E-22 6E-27 229.4 29.7 221 21-243 20-255 (327)
27 2pl2_A Hypothetical conserved 99.9 5.8E-23 2E-27 220.2 24.2 200 19-221 2-212 (217)
28 3cv0_A Peroxisome targeting si 99.9 1.2E-22 4.2E-27 230.6 27.6 257 5-270 38-321 (327)
29 2h6f_A Protein farnesyltransfe 99.9 7.4E-23 2.5E-27 237.9 24.9 268 50-355 90-366 (382)
30 2pl2_A Hypothetical conserved 99.9 6.5E-22 2.2E-26 212.0 24.6 188 54-243 2-200 (217)
31 3u4t_A TPR repeat-containing p 99.9 1.7E-21 5.9E-26 215.4 24.7 229 21-252 2-238 (272)
32 3uq3_A Heat shock protein STI1 99.9 6.7E-21 2.3E-25 208.2 26.6 231 20-268 3-240 (258)
33 3mkr_A Coatomer subunit epsilo 99.9 1.9E-20 6.6E-25 210.1 29.0 277 66-476 8-288 (291)
34 3u4t_A TPR repeat-containing p 99.9 5.3E-21 1.8E-25 211.5 23.6 234 4-240 19-267 (272)
35 2q7f_A YRRB protein; TPR, prot 99.9 1.1E-20 3.9E-25 204.7 24.5 218 21-240 22-239 (243)
36 3uq3_A Heat shock protein STI1 99.9 2.1E-20 7.1E-25 204.3 26.5 222 4-236 21-255 (258)
37 2vq2_A PILW, putative fimbrial 99.9 1.4E-19 4.9E-24 193.1 30.2 216 16-233 2-221 (225)
38 3mkr_A Coatomer subunit epsilo 99.9 5.4E-20 1.8E-24 206.5 28.0 201 33-243 10-215 (291)
39 2ho1_A Type 4 fimbrial biogene 99.9 8E-20 2.7E-24 199.6 28.3 215 16-232 30-247 (252)
40 3e4b_A ALGK; tetratricopeptide 99.9 3.4E-20 1.2E-24 221.9 26.4 202 405-628 200-421 (452)
41 3vtx_A MAMA; tetratricopeptide 99.8 8.4E-20 2.9E-24 189.5 24.6 171 56-227 4-174 (184)
42 3vtx_A MAMA; tetratricopeptide 99.8 1.1E-19 3.8E-24 188.6 24.6 173 20-194 3-175 (184)
43 3sf4_A G-protein-signaling mod 99.8 7E-20 2.4E-24 214.7 25.4 307 19-361 6-366 (406)
44 3e4b_A ALGK; tetratricopeptide 99.8 4.8E-20 1.6E-24 220.5 23.5 381 26-594 7-421 (452)
45 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.8E-19 6.3E-24 199.1 24.7 233 4-243 21-261 (275)
46 1xi4_A Clathrin heavy chain; a 99.8 1.3E-16 4.3E-21 201.4 52.3 126 341-480 1279-1426(1630)
47 4abn_A Tetratricopeptide repea 99.8 1E-19 3.5E-24 219.1 23.2 214 39-254 84-318 (474)
48 1xi4_A Clathrin heavy chain; a 99.8 1.4E-16 4.8E-21 201.0 50.2 489 22-625 985-1531(1630)
49 4a1s_A PINS, partner of inscut 99.8 3.1E-19 1.1E-23 210.3 23.4 285 20-340 46-375 (411)
50 2ond_A Cleavage stimulation fa 99.8 1.5E-18 5E-23 196.7 27.9 223 5-229 33-276 (308)
51 3sf4_A G-protein-signaling mod 99.8 2.8E-19 9.5E-24 209.6 22.5 283 5-291 26-362 (406)
52 4abn_A Tetratricopeptide repea 99.8 4.7E-19 1.6E-23 213.3 24.8 212 6-220 86-318 (474)
53 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-18 3.6E-23 189.1 24.0 201 6-208 41-241 (243)
54 4i17_A Hypothetical protein; T 99.8 4E-18 1.4E-22 183.5 27.8 211 18-237 3-223 (228)
55 3ro2_A PINS homolog, G-protein 99.8 1.2E-18 4E-23 197.7 24.0 283 22-340 5-335 (338)
56 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-18 5.6E-23 191.4 24.3 189 34-226 17-209 (275)
57 2vq2_A PILW, putative fimbrial 99.8 6.2E-18 2.1E-22 180.3 28.0 204 52-263 3-210 (225)
58 2ond_A Cleavage stimulation fa 99.8 2E-18 6.8E-23 195.5 24.0 221 40-267 33-273 (308)
59 2ho1_A Type 4 fimbrial biogene 99.8 4.5E-18 1.5E-22 185.6 26.0 207 51-265 30-239 (252)
60 4a1s_A PINS, partner of inscut 99.8 5.1E-19 1.8E-23 208.4 19.4 261 5-268 65-376 (411)
61 3ro2_A PINS homolog, G-protein 99.8 8.2E-19 2.8E-23 199.0 19.3 261 4-267 21-335 (338)
62 4gyw_A UDP-N-acetylglucosamine 99.8 2E-18 7E-23 215.9 22.4 174 52-226 4-177 (723)
63 1ouv_A Conserved hypothetical 99.8 7.8E-17 2.7E-21 178.6 32.2 231 18-264 2-251 (273)
64 4gyw_A UDP-N-acetylglucosamine 99.8 2.8E-18 9.7E-23 214.6 21.3 174 17-192 4-177 (723)
65 1ouv_A Conserved hypothetical 99.8 1.3E-16 4.3E-21 176.9 31.1 177 53-240 2-194 (273)
66 4i17_A Hypothetical protein; T 99.8 1.2E-16 4E-21 172.0 29.7 153 54-207 4-166 (228)
67 4e6h_A MRNA 3'-END-processing 99.8 9.6E-15 3.3E-19 180.5 50.1 189 405-601 365-577 (679)
68 3dra_A Protein farnesyltransfe 99.8 1.3E-16 4.3E-21 178.3 26.3 233 3-236 48-301 (306)
69 3qky_A Outer membrane assembly 99.8 2.9E-17 9.8E-22 180.9 21.0 211 15-244 8-248 (261)
70 3qky_A Outer membrane assembly 99.7 1.1E-16 3.9E-21 176.1 24.2 189 51-257 9-224 (261)
71 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-17 3.7E-22 188.2 13.1 241 17-266 22-309 (311)
72 2pzi_A Probable serine/threoni 99.7 4.7E-17 1.6E-21 204.6 19.7 189 16-210 388-584 (681)
73 2pzi_A Probable serine/threoni 99.7 7.8E-17 2.7E-21 202.7 21.0 207 51-269 388-603 (681)
74 3as5_A MAMA; tetratricopeptide 99.7 3.5E-16 1.2E-20 160.8 21.4 172 57-229 8-179 (186)
75 4e6h_A MRNA 3'-END-processing 99.7 2.3E-13 7.9E-18 168.2 49.6 246 403-683 328-586 (679)
76 3ulq_A Response regulator aspa 99.7 1.8E-16 6.2E-21 185.2 20.7 236 22-267 12-296 (383)
77 3nf1_A KLC 1, kinesin light ch 99.7 5.5E-17 1.9E-21 182.4 15.0 172 52-224 22-225 (311)
78 3dra_A Protein farnesyltransfe 99.7 2.5E-15 8.6E-20 167.7 28.2 238 31-283 41-300 (306)
79 3as5_A MAMA; tetratricopeptide 99.7 4.6E-16 1.6E-20 159.9 20.6 173 21-195 7-179 (186)
80 3ulq_A Response regulator aspa 99.7 2.9E-16 9.8E-21 183.5 21.4 234 25-268 106-372 (383)
81 3dss_A Geranylgeranyl transfer 99.7 9.1E-15 3.1E-19 164.0 30.3 237 2-239 44-320 (331)
82 3urz_A Uncharacterized protein 99.7 5.7E-16 1.9E-20 164.4 19.2 168 58-227 5-190 (208)
83 3urz_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 166.3 17.2 170 21-193 3-190 (208)
84 4ga2_A E3 SUMO-protein ligase 99.7 5.9E-17 2E-21 162.3 10.7 144 64-208 4-148 (150)
85 1qqe_A Vesicular transport pro 99.7 3.3E-16 1.1E-20 175.7 17.6 204 24-229 39-275 (292)
86 4ga2_A E3 SUMO-protein ligase 99.7 1.1E-16 3.7E-21 160.4 11.1 146 28-175 3-149 (150)
87 1qqe_A Vesicular transport pro 99.7 7.6E-16 2.6E-20 172.8 17.7 204 7-230 4-235 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 99.7 5.2E-15 1.8E-19 159.0 21.9 190 21-229 3-219 (225)
89 1b89_A Protein (clathrin heavy 99.7 5.6E-16 1.9E-20 178.0 14.8 178 34-243 15-192 (449)
90 3q15_A PSP28, response regulat 99.6 7.1E-15 2.4E-19 171.3 24.2 237 24-270 103-371 (378)
91 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.8E-15 2E-19 158.7 21.6 172 5-194 21-218 (225)
92 3edt_B KLC 2, kinesin light ch 99.6 1.6E-15 5.6E-20 167.4 15.9 215 7-223 20-281 (283)
93 1hz4_A MALT regulatory protein 99.6 7.8E-14 2.7E-18 161.9 29.6 241 22-267 14-285 (373)
94 1hz4_A MALT regulatory protein 99.6 6.5E-14 2.2E-18 162.6 28.1 260 5-267 31-325 (373)
95 2r5s_A Uncharacterized protein 99.6 2.6E-15 8.8E-20 154.7 14.2 164 57-222 6-172 (176)
96 3dss_A Geranylgeranyl transfer 99.6 3.1E-13 1E-17 151.6 31.2 194 34-228 41-272 (331)
97 3qou_A Protein YBBN; thioredox 99.6 1.9E-14 6.5E-19 160.9 21.3 170 52-222 112-283 (287)
98 4gco_A Protein STI-1; structur 99.6 9.9E-15 3.4E-19 141.3 15.5 120 118-237 5-124 (126)
99 2r5s_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 153.6 13.0 168 18-188 2-172 (176)
100 3q7a_A Farnesyltransferase alp 99.6 7.8E-14 2.7E-18 157.0 24.8 229 4-233 70-342 (349)
101 1b89_A Protein (clathrin heavy 99.6 1.9E-14 6.5E-19 165.3 19.4 276 8-363 23-303 (449)
102 3edt_B KLC 2, kinesin light ch 99.6 9.8E-15 3.4E-19 161.1 16.4 220 38-263 16-280 (283)
103 4gco_A Protein STI-1; structur 99.6 1.3E-14 4.3E-19 140.6 14.9 111 53-164 9-119 (126)
104 3q15_A PSP28, response regulat 99.6 1.6E-13 5.3E-18 159.9 25.9 249 162-482 103-365 (378)
105 3qou_A Protein YBBN; thioredox 99.6 3.2E-14 1.1E-18 159.1 19.2 171 16-188 111-283 (287)
106 2vsy_A XCC0866; transferase, g 99.6 9.8E-14 3.4E-18 171.1 22.9 162 39-201 5-169 (568)
107 2vsy_A XCC0866; transferase, g 99.6 5E-14 1.7E-18 173.7 20.1 165 71-235 2-169 (568)
108 3q7a_A Farnesyltransferase alp 99.5 4.6E-13 1.6E-17 150.6 24.2 244 23-282 55-343 (349)
109 3gyz_A Chaperone protein IPGC; 99.5 2.7E-14 9.2E-19 142.7 11.7 116 113-228 23-138 (151)
110 4f3v_A ESX-1 secretion system 99.5 2.2E-14 7.5E-19 156.3 11.8 205 24-233 9-246 (282)
111 3gyz_A Chaperone protein IPGC; 99.5 3.4E-14 1.2E-18 141.9 10.8 116 79-194 23-138 (151)
112 3rjv_A Putative SEL1 repeat pr 99.5 1E-12 3.4E-17 139.7 21.1 176 40-224 3-198 (212)
113 2c2l_A CHIP, carboxy terminus 99.5 7.9E-14 2.7E-18 155.3 12.3 198 19-223 1-199 (281)
114 2ifu_A Gamma-SNAP; membrane fu 99.5 6E-13 2E-17 150.3 19.7 198 6-230 9-230 (307)
115 1p5q_A FKBP52, FK506-binding p 99.5 5.7E-15 2E-19 169.1 2.9 181 39-222 81-293 (336)
116 2vgx_A Chaperone SYCD; alterna 99.5 2.8E-13 9.6E-18 135.1 14.7 120 112-231 7-126 (148)
117 3rjv_A Putative SEL1 repeat pr 99.5 3.1E-12 1.1E-16 135.9 22.4 185 7-202 5-208 (212)
118 2vgx_A Chaperone SYCD; alterna 99.5 1.6E-13 5.5E-18 136.8 11.1 118 79-196 8-125 (148)
119 2fo7_A Synthetic consensus TPR 99.5 2.9E-12 1E-16 123.4 19.5 129 61-190 5-133 (136)
120 2fo7_A Synthetic consensus TPR 99.5 3.4E-12 1.2E-16 122.9 19.6 135 93-227 2-136 (136)
121 2xcb_A PCRH, regulatory protei 99.4 9.1E-13 3.1E-17 130.2 15.2 127 113-239 5-131 (142)
122 1p5q_A FKBP52, FK506-binding p 99.4 5.2E-14 1.8E-18 161.1 7.0 171 71-243 78-279 (336)
123 1dce_A Protein (RAB geranylger 99.4 4.2E-13 1.4E-17 163.8 14.5 195 32-227 38-271 (567)
124 2c2l_A CHIP, carboxy terminus 99.4 7.2E-13 2.5E-17 147.5 15.1 182 54-241 1-182 (281)
125 1dce_A Protein (RAB geranylger 99.4 3.2E-13 1.1E-17 164.9 12.0 191 2-193 43-271 (567)
126 2ifu_A Gamma-SNAP; membrane fu 99.4 1.1E-12 3.7E-17 148.2 15.2 201 35-262 4-222 (307)
127 2xcb_A PCRH, regulatory protei 99.4 6.2E-13 2.1E-17 131.4 11.5 118 80-197 6-123 (142)
128 4f3v_A ESX-1 secretion system 99.4 4.2E-13 1.4E-17 146.2 10.9 193 5-201 23-248 (282)
129 3upv_A Heat shock protein STI1 99.4 7.5E-12 2.6E-16 120.5 16.1 115 124-238 2-122 (126)
130 3upv_A Heat shock protein STI1 99.4 1.2E-11 4.2E-16 118.9 16.1 114 21-136 3-122 (126)
131 2e2e_A Formate-dependent nitri 99.4 6E-12 2.1E-16 129.1 14.7 128 103-230 21-151 (177)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.7E-11 9.1E-16 128.0 20.2 131 95-228 9-155 (213)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.2E-11 7.5E-16 128.7 19.5 131 59-193 8-154 (213)
134 2e2e_A Formate-dependent nitri 99.4 6.3E-12 2.2E-16 128.9 14.8 124 71-194 23-149 (177)
135 2fbn_A 70 kDa peptidylprolyl i 99.3 1.2E-12 4.2E-17 137.2 9.3 157 39-214 20-176 (198)
136 1a17_A Serine/threonine protei 99.3 2.7E-11 9.2E-16 122.0 18.8 127 59-186 15-143 (166)
137 2qfc_A PLCR protein; TPR, HTH, 99.3 3.8E-11 1.3E-15 134.4 21.4 170 54-224 72-267 (293)
138 2uy1_A Cleavage stimulation fa 99.3 2.7E-09 9.1E-14 128.2 38.7 208 326-553 197-415 (493)
139 2fbn_A 70 kDa peptidylprolyl i 99.3 1.8E-12 6.2E-17 135.9 9.7 129 16-146 32-176 (198)
140 1a17_A Serine/threonine protei 99.3 3.7E-11 1.3E-15 121.0 18.8 132 92-223 13-146 (166)
141 2qfc_A PLCR protein; TPR, HTH, 99.3 5E-11 1.7E-15 133.4 21.0 170 18-189 71-266 (293)
142 2vyi_A SGTA protein; chaperone 99.3 2E-11 6.9E-16 117.0 15.3 115 95-209 15-129 (131)
143 2vyi_A SGTA protein; chaperone 99.3 1.6E-11 5.3E-16 117.8 14.5 120 55-175 10-129 (131)
144 3sz7_A HSC70 cochaperone (SGT) 99.3 2.8E-11 9.6E-16 122.5 16.6 116 122-237 7-122 (164)
145 2lni_A Stress-induced-phosphop 99.3 2.5E-11 8.6E-16 117.0 15.4 108 97-204 21-128 (133)
146 2lni_A Stress-induced-phosphop 99.3 2.1E-11 7.2E-16 117.6 14.7 118 56-174 15-132 (133)
147 3sz7_A HSC70 cochaperone (SGT) 99.3 3.1E-11 1.1E-15 122.2 14.7 101 95-195 14-114 (164)
148 1na0_A Designed protein CTPR3; 99.3 1.3E-10 4.4E-15 110.2 18.1 112 58-170 10-121 (125)
149 1na0_A Designed protein CTPR3; 99.3 1.6E-10 5.3E-15 109.7 18.2 114 93-206 10-123 (125)
150 3mv2_B Coatomer subunit epsilo 99.3 9.3E-11 3.2E-15 129.3 18.4 183 42-230 85-289 (310)
151 2uy1_A Cleavage stimulation fa 99.3 9.1E-09 3.1E-13 123.5 36.7 207 7-232 14-250 (493)
152 4gcn_A Protein STI-1; structur 99.2 4.2E-11 1.5E-15 115.7 13.3 102 125-226 7-115 (127)
153 3q49_B STIP1 homology and U bo 99.2 1.4E-10 4.7E-15 112.9 17.1 106 121-226 4-109 (137)
154 3u3w_A Transcriptional activat 99.2 9E-11 3.1E-15 131.3 17.8 164 60-224 78-267 (293)
155 3u3w_A Transcriptional activat 99.2 1.3E-10 4.6E-15 129.9 18.8 162 26-189 79-266 (293)
156 3mv2_B Coatomer subunit epsilo 99.2 1.6E-10 5.5E-15 127.5 18.8 186 7-197 85-290 (310)
157 3q49_B STIP1 homology and U bo 99.2 9.2E-11 3.1E-15 114.2 15.0 98 57-155 9-106 (137)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 8.4E-12 2.9E-16 149.1 7.9 143 72-214 248-405 (457)
159 2hr2_A Hypothetical protein; a 99.2 6.6E-11 2.2E-15 116.9 12.9 112 126-237 11-145 (159)
160 1elw_A TPR1-domain of HOP; HOP 99.2 3.3E-10 1.1E-14 106.2 17.4 112 126-237 4-115 (118)
161 1hxi_A PEX5, peroxisome target 99.2 7.1E-11 2.4E-15 113.0 12.8 100 129-228 20-119 (121)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1E-11 3.4E-16 148.4 8.2 143 39-182 250-407 (457)
163 1elw_A TPR1-domain of HOP; HOP 99.2 3E-10 1E-14 106.6 16.4 87 71-157 17-103 (118)
164 4gcn_A Protein STI-1; structur 99.2 1.9E-10 6.4E-15 111.1 15.2 97 60-157 11-114 (127)
165 3gw4_A Uncharacterized protein 99.2 1.6E-10 5.3E-15 120.8 15.4 155 71-225 5-178 (203)
166 1hxi_A PEX5, peroxisome target 99.2 1.1E-10 3.8E-15 111.7 12.8 94 63-157 23-116 (121)
167 3rkv_A Putative peptidylprolyl 99.2 1.8E-10 6.2E-15 116.2 15.1 117 126-242 11-146 (162)
168 2dba_A Smooth muscle cell asso 99.2 4.5E-10 1.5E-14 110.5 16.2 113 54-167 25-140 (148)
169 2dba_A Smooth muscle cell asso 99.2 5.6E-10 1.9E-14 109.8 16.7 117 88-204 24-143 (148)
170 3rkv_A Putative peptidylprolyl 99.2 2.1E-10 7.1E-15 115.8 13.7 128 57-209 11-147 (162)
171 3gw4_A Uncharacterized protein 99.2 4.4E-10 1.5E-14 117.3 16.6 166 103-269 3-181 (203)
172 4b4t_Q 26S proteasome regulato 99.1 2.4E-09 8.2E-14 126.4 24.4 175 95-269 58-250 (434)
173 2hr2_A Hypothetical protein; a 99.1 2.4E-10 8.2E-15 112.9 12.6 116 57-195 11-137 (159)
174 2xev_A YBGF; tetratricopeptide 99.1 7.1E-10 2.4E-14 106.5 15.9 99 61-160 6-110 (129)
175 2kck_A TPR repeat; tetratricop 99.1 1.9E-10 6.4E-15 107.0 11.1 106 122-227 2-110 (112)
176 2xev_A YBGF; tetratricopeptide 99.1 8.5E-10 2.9E-14 106.0 15.6 116 23-140 3-124 (129)
177 1elr_A TPR2A-domain of HOP; HO 99.1 7.9E-10 2.7E-14 105.8 15.3 116 125-241 3-125 (131)
178 1wao_1 Serine/threonine protei 99.1 2E-11 6.8E-16 146.4 4.7 124 95-218 9-134 (477)
179 2kck_A TPR repeat; tetratricop 99.1 3.9E-10 1.3E-14 104.8 11.9 105 18-124 2-109 (112)
180 1elr_A TPR2A-domain of HOP; HO 99.1 7.1E-10 2.4E-14 106.1 13.1 110 57-168 4-120 (131)
181 1wao_1 Serine/threonine protei 99.1 2.9E-11 9.9E-16 145.0 3.4 127 57-184 6-134 (477)
182 2if4_A ATFKBP42; FKBP-like, al 99.1 1.1E-10 3.7E-15 133.5 7.1 159 53-229 175-334 (338)
183 2if4_A ATFKBP42; FKBP-like, al 99.0 1.2E-10 4E-15 133.3 6.8 159 17-194 174-333 (338)
184 4b4t_Q 26S proteasome regulato 99.0 2.4E-09 8.2E-14 126.4 18.3 201 22-224 4-246 (434)
185 1zu2_A Mitochondrial import re 99.0 6.1E-10 2.1E-14 109.7 9.7 32 142-173 62-93 (158)
186 3k9i_A BH0479 protein; putativ 99.0 5.2E-10 1.8E-14 106.1 8.7 91 106-196 4-97 (117)
187 1zu2_A Mitochondrial import re 99.0 9.5E-10 3.2E-14 108.3 9.9 92 138-229 14-126 (158)
188 1ihg_A Cyclophilin 40; ppiase 99.0 2.3E-09 8E-14 123.9 14.8 140 57-215 223-362 (370)
189 1ihg_A Cyclophilin 40; ppiase 99.0 2.8E-09 9.5E-14 123.2 15.3 140 93-250 224-363 (370)
190 3k9i_A BH0479 protein; putativ 99.0 5E-10 1.7E-14 106.2 7.5 93 71-163 3-98 (117)
191 3ro3_A PINS homolog, G-protein 99.0 4.2E-09 1.4E-13 104.6 13.4 140 57-225 9-160 (164)
192 3ro3_A PINS homolog, G-protein 99.0 3.5E-09 1.2E-13 105.2 12.7 131 22-154 9-157 (164)
193 2l6j_A TPR repeat-containing p 98.8 5.3E-09 1.8E-13 97.3 5.8 95 125-219 3-103 (111)
194 2kat_A Uncharacterized protein 98.8 8.2E-08 2.8E-12 90.2 14.1 83 144-226 3-85 (115)
195 2kat_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 92.6 11.1 82 110-191 3-84 (115)
196 1na3_A Designed protein CTPR2; 98.7 9.4E-08 3.2E-12 85.1 12.4 83 125-207 8-90 (91)
197 2l6j_A TPR repeat-containing p 98.7 8.8E-09 3E-13 95.7 5.2 92 22-115 4-101 (111)
198 1na3_A Designed protein CTPR2; 98.7 1.1E-07 3.8E-12 84.6 11.6 82 21-104 8-89 (91)
199 3u64_A Protein TP_0956; tetrat 98.7 2.6E-06 8.8E-11 91.5 22.7 84 401-485 180-272 (301)
200 3ma5_A Tetratricopeptide repea 98.6 2.1E-07 7.1E-12 85.3 9.7 68 122-189 3-70 (100)
201 2kc7_A BFR218_protein; tetratr 98.6 1.2E-07 4.1E-12 86.2 8.1 91 130-228 4-95 (99)
202 3ma5_A Tetratricopeptide repea 98.5 5.4E-07 1.8E-11 82.4 12.1 73 155-227 2-74 (100)
203 3u64_A Protein TP_0956; tetrat 98.5 3.5E-06 1.2E-10 90.4 19.9 179 40-227 49-273 (301)
204 1klx_A Cysteine rich protein B 98.5 1.3E-06 4.5E-11 85.2 15.0 54 63-119 31-88 (138)
205 1klx_A Cysteine rich protein B 98.5 2E-06 6.9E-11 83.9 15.8 121 71-201 8-136 (138)
206 3ly7_A Transcriptional activat 98.5 1.7E-06 5.6E-11 97.1 16.5 75 119-194 270-344 (372)
207 2kc7_A BFR218_protein; tetratr 98.5 2.6E-07 8.8E-12 84.0 7.8 89 26-124 4-93 (99)
208 3ly7_A Transcriptional activat 98.4 3.7E-06 1.3E-10 94.2 17.2 155 49-229 186-345 (372)
209 3n71_A Histone lysine methyltr 98.3 3.1E-06 1.1E-10 100.6 14.8 98 127-224 352-465 (490)
210 3n71_A Histone lysine methyltr 98.3 1.4E-06 4.7E-11 103.7 11.7 117 138-254 321-461 (490)
211 3bee_A Putative YFRE protein; 98.2 7.4E-06 2.5E-10 73.6 10.7 74 18-92 2-77 (93)
212 4g26_A Pentatricopeptide repea 98.2 9.2E-05 3.2E-09 88.6 22.9 162 459-628 32-204 (501)
213 3bee_A Putative YFRE protein; 98.1 1.2E-05 4.2E-10 72.2 10.9 72 156-227 2-76 (93)
214 1pc2_A Mitochondria fission pr 98.0 3.7E-05 1.3E-09 74.7 12.6 91 142-232 14-109 (152)
215 3qww_A SET and MYND domain-con 98.0 2.7E-05 9.3E-10 91.0 13.4 96 534-630 310-413 (433)
216 1pc2_A Mitochondria fission pr 98.0 4.7E-05 1.6E-09 74.0 12.4 88 76-163 16-108 (152)
217 4g26_A Pentatricopeptide repea 98.0 0.00076 2.6E-08 80.6 25.3 164 59-223 28-204 (501)
218 3qwp_A SET and MYND domain-con 97.8 0.00015 5E-09 84.9 14.7 107 531-638 296-410 (429)
219 2v5f_A Prolyl 4-hydroxylase su 97.7 0.0002 6.8E-09 65.7 11.6 76 22-99 5-87 (104)
220 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00028 9.6E-09 64.7 12.5 76 160-235 5-87 (104)
221 3qww_A SET and MYND domain-con 97.7 0.00023 7.9E-09 83.1 13.6 82 520-602 338-424 (433)
222 3qwp_A SET and MYND domain-con 97.6 0.00021 7.2E-09 83.6 11.0 124 425-578 294-426 (429)
223 1nzn_A CGI-135 protein, fissio 97.2 0.0026 9E-08 59.4 12.1 89 76-164 19-112 (126)
224 1nzn_A CGI-135 protein, fissio 97.2 0.0026 8.8E-08 59.5 12.0 90 142-231 17-111 (126)
225 4h7y_A Dual specificity protei 97.2 0.0054 1.9E-07 58.4 14.0 109 87-196 8-130 (161)
226 4h7y_A Dual specificity protei 96.9 0.0078 2.7E-07 57.4 11.9 106 17-125 8-127 (161)
227 3ffl_A Anaphase-promoting comp 96.6 0.0071 2.4E-07 59.0 9.2 34 523-556 64-97 (167)
228 3ffl_A Anaphase-promoting comp 96.3 0.043 1.5E-06 53.6 13.0 121 522-648 20-165 (167)
229 3txn_A 26S proteasome regulato 96.2 0.38 1.3E-05 54.6 22.1 180 419-632 20-214 (394)
230 1y8m_A FIS1; mitochondria, unk 95.8 0.17 5.9E-06 47.9 13.8 72 160-231 39-114 (144)
231 1y8m_A FIS1; mitochondria, unk 95.7 0.24 8.3E-06 46.9 14.6 81 123-203 36-120 (144)
232 3o48_A Mitochondria fission 1 95.4 0.15 5E-06 47.8 11.6 52 145-196 62-114 (134)
233 3o48_A Mitochondria fission 1 95.3 0.17 5.9E-06 47.3 11.9 77 158-234 38-118 (134)
234 3kae_A CDC27, possible protein 95.0 2 6.9E-05 41.5 18.3 102 18-126 29-148 (242)
235 3txn_A 26S proteasome regulato 94.6 0.84 2.9E-05 51.8 17.7 166 59-225 21-212 (394)
236 4gns_B Protein CSD3, chitin bi 93.5 0.42 1.4E-05 58.9 13.1 115 105-220 261-397 (754)
237 3kae_A CDC27, possible protein 93.4 6 0.00021 38.3 18.4 101 383-485 29-146 (242)
238 4gns_B Protein CSD3, chitin bi 93.2 0.32 1.1E-05 60.0 11.4 115 71-186 261-397 (754)
239 3spa_A Mtrpol, DNA-directed RN 92.6 0.64 2.2E-05 58.4 12.9 102 521-629 126-231 (1134)
240 3mkq_A Coatomer beta'-subunit; 92.0 3.4 0.00011 51.9 19.4 96 34-152 611-707 (814)
241 3mkq_A Coatomer beta'-subunit; 91.8 4 0.00014 51.2 19.8 74 27-118 634-707 (814)
242 3mkq_B Coatomer subunit alpha; 91.7 3.9 0.00013 40.5 15.0 54 21-84 7-60 (177)
243 4b4t_P 26S proteasome regulato 91.7 11 0.00036 43.8 21.4 104 160-266 137-249 (445)
244 2ff4_A Probable regulatory pro 91.0 1 3.6E-05 51.3 11.8 95 533-627 126-233 (388)
245 2ff4_A Probable regulatory pro 90.9 2.4 8.1E-05 48.3 14.7 61 162-222 173-233 (388)
246 1zbp_A Hypothetical protein VP 90.5 2.2 7.4E-05 45.2 12.4 55 104-158 9-63 (273)
247 3spa_A Mtrpol, DNA-directed RN 90.2 3.6 0.00012 51.9 16.0 99 126-224 127-231 (1134)
248 3mkq_B Coatomer subunit alpha; 89.8 7 0.00024 38.6 14.8 100 103-220 16-115 (177)
249 1zbp_A Hypothetical protein VP 88.5 3.3 0.00011 43.8 12.0 60 135-194 6-65 (273)
250 4b4t_P 26S proteasome regulato 88.0 40 0.0014 38.8 22.3 185 35-223 29-247 (445)
251 4b4t_R RPN7, 26S proteasome re 86.0 3.7 0.00013 47.4 12.0 105 521-631 130-240 (429)
252 1ya0_A SMG-7 transcript varian 85.1 3.6 0.00012 48.3 11.2 80 94-173 154-233 (497)
253 4fhn_B Nucleoporin NUP120; pro 83.8 48 0.0017 43.3 22.5 140 29-175 819-986 (1139)
254 1ya0_A SMG-7 transcript varian 83.1 5.6 0.00019 46.6 11.7 78 162-239 154-231 (497)
255 4ady_A RPN2, 26S proteasome re 82.4 1.1E+02 0.0039 38.4 41.3 210 389-613 457-679 (963)
256 4b4t_S RPN3, 26S proteasome re 81.7 12 0.0004 43.7 13.4 121 36-159 149-303 (523)
257 4fhn_B Nucleoporin NUP120; pro 80.1 28 0.00096 45.6 18.2 121 132-258 818-961 (1139)
258 4b4t_R RPN7, 26S proteasome re 79.2 7.7 0.00026 44.7 11.1 98 127-224 132-238 (429)
259 4b4t_S RPN3, 26S proteasome re 77.3 11 0.00038 43.9 11.4 130 135-266 145-301 (523)
260 3ktp_B Trinucleotide repeat-co 76.8 0.62 2.1E-05 28.4 0.4 10 1111-1120 5-14 (22)
261 1qsa_A Protein (soluble lytic 76.1 1.4E+02 0.0048 35.8 40.7 125 423-549 219-346 (618)
262 4ady_A RPN2, 26S proteasome re 69.2 2.4E+02 0.0082 35.5 50.3 298 419-742 377-698 (963)
263 1qsa_A Protein (soluble lytic 67.3 2.1E+02 0.0073 34.2 36.9 121 463-593 224-347 (618)
264 3esl_A Checkpoint serine/threo 63.0 41 0.0014 33.8 10.3 86 543-629 58-145 (202)
265 2wpv_A GET4, UPF0363 protein Y 59.5 2E+02 0.0067 31.1 20.1 27 520-546 132-158 (312)
266 3ubw_A 14-3-3E, 14-3-3 protein 49.1 2.5E+02 0.0086 29.3 14.1 47 417-463 30-76 (261)
267 4a1g_A Mitotic checkpoint seri 47.6 1.8E+02 0.0062 27.7 11.6 24 460-483 108-131 (152)
268 2wpv_A GET4, UPF0363 protein Y 45.9 3.2E+02 0.011 29.5 16.7 26 598-623 133-158 (312)
269 2wvi_A Mitotic checkpoint seri 43.7 63 0.0022 31.4 7.9 82 542-629 43-126 (164)
270 3lvg_A Clathrin heavy chain 1; 42.1 0.012 4E-07 67.1 -21.2 170 416-621 52-221 (624)
271 1wy6_A Hypothetical protein ST 40.0 2.4E+02 0.0083 26.5 12.5 20 71-90 20-39 (172)
272 3uzd_A 14-3-3 protein gamma; s 39.1 3E+02 0.01 28.5 12.5 45 419-463 5-49 (248)
273 4a1g_A Mitotic checkpoint seri 38.7 56 0.0019 31.3 6.5 83 542-630 48-132 (152)
274 3lpz_A GET4 (YOR164C homolog); 37.0 4.4E+02 0.015 28.6 23.2 81 520-627 134-215 (336)
275 1o9d_A 14-3-3-like protein C; 36.8 3.9E+02 0.013 27.9 21.4 43 162-204 10-55 (260)
276 4aez_C MAD3, mitotic spindle c 36.5 67 0.0023 32.8 7.1 83 542-630 97-181 (223)
277 4gq2_M Nucleoporin NUP120; bet 35.8 2.3E+02 0.0079 35.9 13.8 94 132-229 816-933 (950)
278 4gq2_M Nucleoporin NUP120; bet 35.8 1.2E+02 0.0041 38.6 11.1 37 512-548 830-866 (950)
279 2br9_A 14-3-3E, 14-3-3 protein 34.0 4E+02 0.014 27.3 13.8 177 417-593 4-201 (234)
280 1wy6_A Hypothetical protein ST 32.6 3.2E+02 0.011 25.7 12.4 119 101-223 16-154 (172)
281 3uzd_A 14-3-3 protein gamma; s 29.9 4.8E+02 0.017 26.9 19.9 59 161-219 5-65 (248)
282 3iqu_A 14-3-3 protein sigma; s 29.8 4.7E+02 0.016 26.8 18.3 60 160-219 8-69 (236)
283 1o9d_A 14-3-3-like protein C; 27.9 5.4E+02 0.018 26.8 14.0 46 418-463 8-55 (260)
284 3ubw_A 14-3-3E, 14-3-3 protein 26.9 5.6E+02 0.019 26.7 21.6 60 160-219 31-92 (261)
285 2npm_A 14-3-3 domain containin 24.6 6.1E+02 0.021 26.4 20.9 44 162-205 30-77 (260)
286 2npm_A 14-3-3 domain containin 23.5 6.4E+02 0.022 26.2 14.1 46 418-463 28-76 (260)
287 2crb_A Nuclear receptor bindin 23.4 2E+02 0.0067 24.8 6.4 45 230-274 10-54 (97)
288 3re2_A Predicted protein; meni 22.5 5.3E+02 0.018 28.1 11.0 69 520-592 253-323 (472)
289 3t5x_A PCI domain-containing p 21.0 1.6E+02 0.0055 29.6 6.8 33 58-91 15-47 (203)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-36 Score=354.91 Aligned_cols=385 Identities=18% Similarity=0.222 Sum_probs=334.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
.+|..++..|+ +++|+..+.++++.+|+++.++..+|.++.. .|++++|...++++++.+|.+..++..+|.++...|
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 46778888887 9999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 107 KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 187 IELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 187 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...++
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------------------- 218 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI----------------------- 218 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-----------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------------
Confidence 999999999999999999999999999999999999999998888777776665443
Q ss_pred HHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHH
Q 045024 267 ANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT 346 (1173)
Q Consensus 267 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 346 (1173)
+++|+..|++++..+|+++.++.
T Consensus 219 ---------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 219 ---------------------------------------------------------FDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhCcCCHHHHH
Confidence 23567778888888999999999
Q ss_pred HHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 045024 347 DIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGK 426 (1173)
Q Consensus 347 ~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~ 426 (1173)
.+|.++...|++++| ...|+++++.+|+++.++..+|.
T Consensus 242 ~l~~~~~~~g~~~~A------------------------------------------~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 242 NLACVYYEQGLIDLA------------------------------------------IDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHTTCHHHH------------------------------------------HHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHH------------------------------------------HHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999888888777 34677777888888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHH
Q 045024 427 LYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQ 506 (1173)
Q Consensus 427 ~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~ 506 (1173)
++...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|+++++..
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 335 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNN-LANIKREQGNIEEAVRLYRKALEVF----------------------- 335 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHTTSC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 9999999999999999999999999988888 6778889999998888777776654
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCC
Q 045024 507 VFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGN 580 (1173)
Q Consensus 507 A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~ 580 (1173)
|+++.++..+|.++...|++++|+..|++++++ .|.+..+++++|.++..+|+
T Consensus 336 ------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 336 ------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---------CTTCHHHHHHHHHHHHHTCC
T ss_pred ------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHhHHHHHHHccC
Confidence 566677777777777778888888887777532 23345577777777776653
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-36 Score=355.16 Aligned_cols=385 Identities=18% Similarity=0.179 Sum_probs=342.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 045024 62 YLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 62 ~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 141 (1173)
.+|..+.. .|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 4 ~~a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQ-AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 46788889 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
+.+|++..++..+|.++...|+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~---------------------------------------------------------- 184 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGE---------------------------------------------------------- 184 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTC----------------------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCC----------------------------------------------------------
Confidence 9999998888888777766554
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
+++|+..|+++++++|+++.++..+|.++...|++++|
T Consensus 185 ----------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A-------------------- 222 (388)
T 1w3b_A 185 ----------------------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-------------------- 222 (388)
T ss_dssp ----------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH--------------------
T ss_pred ----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH--------------------
Confidence 23566777888888899988999998888877777766
Q ss_pred hcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 382 LEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...|.+++..+|+++.++..+|.+|...|++++|+..|+++++.+|+++.++.. ++.
T Consensus 223 ----------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~ 279 (388)
T 1w3b_A 223 ----------------------VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN-LAN 279 (388)
T ss_dssp ----------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH-HHH
T ss_pred ----------------------HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHH
Confidence 346777788888889999999999999999999999999999999999988888 677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 462 VQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A 541 (1173)
++...|++++|++.|+++++ .+|+++.++..+|.++...|++++|
T Consensus 280 ~~~~~g~~~~A~~~~~~al~-----------------------------------~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALR-----------------------------------LCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHH-----------------------------------HCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh-----------------------------------hCcccHHHHHHHHHHHHHcCCHHHH
Confidence 88889999888776665554 4578888999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGK 614 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~ 614 (1173)
+..|++++ +..| ....++..+|.++...|++++|++.|+++++.+|.++.++..+|.++...|+
T Consensus 325 ~~~~~~al---~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKAL---EVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHT---TSCT------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHH---hcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999985 3333 3455899999999999999999999999999999999999999999988874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-36 Score=377.61 Aligned_cols=491 Identities=14% Similarity=0.028 Sum_probs=368.5
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.++..+..++..+...|+ +++|+..|++++...|+ ...++.+|.++.. .|++++|+..|++++.. |.++.++..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ-YKCAAFVGEKVLDITGN-PNDAFWLAQVYCC-TGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccC-chHHHHHHHHHHhhCCC-chHHHHHHHHHHH-cCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 356778888888888887 99999999999988885 4677889999999 99999999999988765 67788899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 100 ELLEHGGKESLEVVVCREASDKS----------------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
.+|.+.|++++|+..|++..... |.++.+++.+|.+|...|++++|+..|+++++.+|++..++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998633222 22478899999999999999999999999999999999888
Q ss_pred HHHHHHHHHcCCHHHHHHH---HHHHHHhCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 164 EALGLAYHRLGMFSAAIKS---YGRAIELDDTS-IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 164 ~~la~~~~~~g~~~~A~~~---~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
..++.++...++.+.+... +.+....++.. ...+..++..|.+.|++++|+..|+++++. |.+...+..++.++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH
Confidence 8888766554433332221 22222222211 122334466677788888888888888776 667778888888887
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhh
Q 045024 240 GLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTT 319 (1173)
Q Consensus 240 ~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 319 (1173)
..|+
T Consensus 317 ~~g~---------------------------------------------------------------------------- 320 (597)
T 2xpi_A 317 VRSR---------------------------------------------------------------------------- 320 (597)
T ss_dssp HTTC----------------------------------------------------------------------------
T ss_pred HhcC----------------------------------------------------------------------------
Confidence 7665
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcc
Q 045024 320 CLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNY 399 (1173)
Q Consensus 320 ~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~ 399 (1173)
+++|+..|+++++.+|++..++..++.++...|++++|.
T Consensus 321 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------------------------------------- 359 (597)
T 2xpi_A 321 ----FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY------------------------------------- 359 (597)
T ss_dssp ----HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH-------------------------------------
T ss_pred ----HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH-------------------------------------
Confidence 224555556666666777777777777777777776662
Q ss_pred cHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHH
Q 045024 400 NGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRA 479 (1173)
Q Consensus 400 ~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~a 479 (1173)
..|.++++..|+++.++..+|.+|.+.|++++|+..|+++++++|++..+|.. ++.++.+.|++++|++.|+++
T Consensus 360 -----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 360 -----LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG-FAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp -----HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Confidence 23444445556666666666666666666666666666666666666666666 445666666666666666666
Q ss_pred HhcCC-chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Q 045024 480 VQILP-LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGT 558 (1173)
Q Consensus 480 l~~~p-~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~ 558 (1173)
++..| ....+..++..+...|+ .++|+..++++++..|+++.++..+|.++.+.|++++|++.|+++++.....+.
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 510 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGN--ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS- 510 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHhCccchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc-
Confidence 66665 34555556666666665 456777777777778899999999999999999999999999999876544332
Q ss_pred CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchh
Q 045024 559 VPNSH-FQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSA 637 (1173)
Q Consensus 559 ~~~~~-~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~ 637 (1173)
.+. ...++..+|.++...|++++|++.|+++++.+|.++.++..+|.+|...|++++|++.|+++++..| ..
T Consensus 511 --~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 583 (597)
T 2xpi_A 511 --NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-----NE 583 (597)
T ss_dssp --CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred --chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CC
Confidence 233 3679999999999999999999999999999999999999999999999999999999999999888 44
Q ss_pred hhhHHHHHHHH
Q 045024 638 AASVSFICRLL 648 (1173)
Q Consensus 638 ~~~~~~la~l~ 648 (1173)
+.++..++.++
T Consensus 584 ~~~~~~l~~~~ 594 (597)
T 2xpi_A 584 IMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHHH
Confidence 56666666554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-34 Score=361.14 Aligned_cols=468 Identities=11% Similarity=-0.020 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+..|++++...|++ ..++.+|.++...|+ +++|+..|++++.. |.++.++..+|.+|.. .|++++|+..|++
T Consensus 101 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~- 175 (597)
T 2xpi_A 101 KCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY-NRSSACRYLAAFCLVK-LYDWQGALNLLGE- 175 (597)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG-GTCHHHHHHHHHHHHH-TTCHHHHHHHHCS-
T ss_pred hHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc-ccchhHHHHHHHHHHH-HhhHHHHHHHHhc-
Confidence 44699999999999954 778899999999998 99999999998755 6779999999999999 9999999999996
Q ss_pred HhhCCCC-------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q 045024 85 VSLSPDD-------------------SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEA 145 (1173)
Q Consensus 85 l~~~p~~-------------------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 145 (1173)
..|.. ..++..+|.+|.+.|++++|+..|+++++.+|+++.++..++.++...++.+.+
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 --TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp --SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred --cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence 34544 778999999999999999999999999999999999999888776544433332
Q ss_pred HHH---HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 146 VQS---LQHAIRGYPTS-PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 146 ~~~---l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
... +.+....++.. ...+..++..|.+.|++++|+..|+++++. |.+..++..++.++...|++++|+..|++++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 221 22222222211 223344466777778888888888887776 6677788888888888888888888888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhc
Q 045024 222 KISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQS 301 (1173)
Q Consensus 222 ~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (1173)
+.+|++..++..++.++...|+ + +
T Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~-------~-------~------------------------------------------ 356 (597)
T 2xpi_A 333 EIDPYNLDVYPLHLASLHESGE-------K-------N------------------------------------------ 356 (597)
T ss_dssp HHCTTCCTTHHHHHHHHHHHTC-------H-------H------------------------------------------
T ss_pred HcCcccHHHHHHHHHHHHHhCC-------H-------H------------------------------------------
Confidence 8888777777777777776555 2 1
Q ss_pred hhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHh
Q 045024 302 LEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALL 381 (1173)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~ 381 (1173)
+|+..++++++..|+++.++..++.+|...|++++|.. .+.+++.
T Consensus 357 ------------------------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~~ 401 (597)
T 2xpi_A 357 ------------------------KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR-----------YFSKSST 401 (597)
T ss_dssp ------------------------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHH
T ss_pred ------------------------HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHH
Confidence 23344444445555555566666666666665555521 1222222
Q ss_pred hcCCCHHHHHHHHHhhc---ccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHh
Q 045024 382 LEGDNCQFWVTLGCLSN---YNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM 458 (1173)
Q Consensus 382 ~~p~~~~~~~~Lg~~~~---~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l 458 (1173)
..|++...|..++.++. +...|.+.|+++++..|+++.++..+|.+|.+.|++++|++.|+++++.+|+++.+|..
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~- 480 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE- 480 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH-
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH-
Confidence 22222222222222222 11222344555555556566666666666666666666666666666666666666555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q 045024 459 SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY-PESHNLYGLVCEARSD 537 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~-~~a~~~lg~i~~~~g~ 537 (1173)
++.++.+.|++++|++.|+++++..|.. ..+|++ ..++..+|.++...|+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------------------~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKT-----------------------------QSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-----------------------------CCCSGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhcc-----------------------------ccchhhHHHHHHHHHHHHHHhcC
Confidence 4446666666666666665555432200 014554 7899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 045024 538 YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEVLQVYAFSLW 610 (1173)
Q Consensus 538 ~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~ 610 (1173)
+++|++.|+++++. .|+ ...++..+|.+|...|++++|++.|+++++.+|+++.++..++.+|.
T Consensus 532 ~~~A~~~~~~~~~~---~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 532 YDAAIDALNQGLLL---STN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHH---SSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999654 333 34589999999999999999999999999999999999999888764
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.6e-32 Score=334.43 Aligned_cols=452 Identities=15% Similarity=0.100 Sum_probs=356.4
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 24 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEPVFYSNISACYIS-TGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 46789999999999998 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHL---WEALGLAYHRLGMFS 177 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~ 177 (1173)
++...|++++|+..|+ ++..+|+....+ ...+...+...+|+..+++++...|..... .......+....+.+
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999996 888888765544 234555666788999999998876543211 122334456677888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHH--------HHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIF--------LMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
.+...+.+....++........++.++ ...|++++|+..|+++++.+|+++..+..++.++..+|..+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 777777666655555444444444443 344689999999999999999999988888888888777555555
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 250 AFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
+++ +|+.
T Consensus 258 ~~~-------------------------------------------------------------------------~A~~ 264 (537)
T 3fp2_A 258 NLL-------------------------------------------------------------------------DAQV 264 (537)
T ss_dssp CHH-------------------------------------------------------------------------HHHH
T ss_pred cHH-------------------------------------------------------------------------HHHH
Confidence 443 4556
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIR 409 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~k 409 (1173)
.|++++..+|+ +.++..+|.++...|++++| ...|.+
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A------------------------------------------~~~~~~ 301 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEF------------------------------------------FKFFQK 301 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH------------------------------------------HHHHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH------------------------------------------HHHHHH
Confidence 66777777787 77788888777766666655 456777
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHH
Q 045024 410 GLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQ 489 (1173)
Q Consensus 410 al~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 489 (1173)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|+++++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~-------- 372 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ-LACLLYKQGKFTESEAFFNETKL-------- 372 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 888889999999999999999999999999999999999999999988 67789899999988876665554
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHH
Q 045024 490 IGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISI 569 (1173)
Q Consensus 490 ~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~ 569 (1173)
.+|+++.++..+|.++...|++++|+..|+++++.....+. .......+.
T Consensus 373 ---------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~ 422 (537)
T 3fp2_A 373 ---------------------------KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK---IHVGIGPLI 422 (537)
T ss_dssp ---------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS---CSSTTHHHH
T ss_pred ---------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh---hHHHHHHHH
Confidence 45778889999999999999999999999999877544332 222334567
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccc
Q 045024 570 NLARSLSRA----------GNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAME 633 (1173)
Q Consensus 570 ~La~~~~~~----------g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~ 633 (1173)
.+|.++... |++++|+..|+++++.+|.++.++..+|.++...|++++|++.|+++++..|...
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 889999999 9999999999999999999999999999999999999999999999999888544
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=321.58 Aligned_cols=414 Identities=14% Similarity=0.074 Sum_probs=293.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+| ++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELKE-DPVFYSNLSACYVS-VGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCc-cHHHHHhHHHHHHH-HhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35788999999999987 9999999999999999 59999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHh----------------------
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS---EAVQSLQHAIRG---------------------- 155 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~A~~~l~~al~~---------------------- 155 (1173)
++...|++++|+..|++++...|.+.................. +++..++.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999998865433322222222211111 111111111100
Q ss_pred --------------------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCChHHHH
Q 045024 156 --------------------YPTSPHLWEALGLAYHR---LGMFSAAIKSYGRAIE-----L--D-------DTSIFPLL 198 (1173)
Q Consensus 156 --------------------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~a~~ 198 (1173)
.|+++..+..+|.++.. .|++++|+..|+++++ . + |.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 02335555555555554 5666666666666655 3 2 22344555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCI 278 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~ 278 (1173)
.+|.++...|++++|+..|+++++.+|+ ..++..++.++...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~----------------------------------- 285 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRND----------------------------------- 285 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSC-----------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCC-----------------------------------
Confidence 5666666666666666666666665555 4444444444433222
Q ss_pred HHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH
Q 045024 279 WKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSL 358 (1173)
Q Consensus 279 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~ 358 (1173)
+++|+..|++++..+|.++.++..+|.++...|++
T Consensus 286 ---------------------------------------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 286 ---------------------------------------------STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp ---------------------------------------------CTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred ---------------------------------------------HHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 12355555666666666666666666666666655
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 359 NEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR 438 (1173)
Q Consensus 359 ~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~ 438 (1173)
++| ...|.+++..+|.++.++..+|.++...|++++|+
T Consensus 321 ~~A------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 321 DQA------------------------------------------GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp THH------------------------------------------HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHH------------------------------------------HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 554 34566666667777777777788888888888888
Q ss_pred HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 045024 439 QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRG 518 (1173)
Q Consensus 439 ~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~ 518 (1173)
..|+++++.+|+++.++.. .+.++...|++++|+..|++++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~----------------------------------- 402 (514)
T 2gw1_A 359 TLFSEAKRKFPEAPEVPNF-FAEILTDKNDFDKALKQYDLAIELE----------------------------------- 402 (514)
T ss_dssp HHHHHHHHHSTTCSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHcccCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhh-----------------------------------
Confidence 8888888777777777777 5667777777777777776666543
Q ss_pred CCC------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045024 519 PHY------PESHNLYGLVCEA---RSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECE 589 (1173)
Q Consensus 519 P~~------~~a~~~lg~i~~~---~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~ 589 (1173)
|++ ..++..+|.++.. .|++++|+..|++++.. .| ....++..+|.++...|++++|+..|+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~------~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---DP------RSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CT------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---Cc------ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 4488999999999 99999999999999754 33 334589999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHH
Q 045024 590 SLERQGMLDAEVLQVY 605 (1173)
Q Consensus 590 ~~~~~~p~~~~~~~~l 605 (1173)
++++.+|.++.++..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccccHHHHHHH
Confidence 9999999998887554
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-30 Score=313.11 Aligned_cols=419 Identities=19% Similarity=0.154 Sum_probs=331.0
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+.++..+|..+.. .|++++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 5 ~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFR-NKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 35789999999999 9999999999999999999 688999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHH-------------------------
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSY---GRAI------------------------- 187 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~al------------------------- 187 (1173)
+...|++++|+..|++++..+|.+...................+.+.+ +.+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999999999866444333322222221111111111 1110
Q ss_pred ---------Hh--------CCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----h--cCCCHHHHHHHHHHHHH
Q 045024 188 ---------EL--------DDTSIFPLLESGNIFLM---LGNFRKGVEQFQLALK-----I--SSENVSAHYGLASGLLG 240 (1173)
Q Consensus 188 ---------~~--------~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~a~~~la~~~~~ 240 (1173)
.. .|++..+++.+|.++.. .|++++|+..|+++++ . +|++.........++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00 13447777888888776 8899999999999888 5 56554333233333333
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhh
Q 045024 241 LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTC 320 (1173)
Q Consensus 241 l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (1173)
+|..+...|+
T Consensus 243 ~~~~~~~~~~---------------------------------------------------------------------- 252 (514)
T 2gw1_A 243 TGIFKFLKND---------------------------------------------------------------------- 252 (514)
T ss_dssp HHHHHHHSSC----------------------------------------------------------------------
T ss_pred HHHHHHHCCC----------------------------------------------------------------------
Confidence 3332222222
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhccc
Q 045024 321 LMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYN 400 (1173)
Q Consensus 321 ~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~ 400 (1173)
+++|+..|+++++..|. +.++..+|.++...|++++|.
T Consensus 253 ---~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~-------------------------------------- 290 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYY-------------------------------------- 290 (514)
T ss_dssp ---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGG--------------------------------------
T ss_pred ---HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHH--------------------------------------
Confidence 34566677777777888 888888888888888777763
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHH
Q 045024 401 GLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV 480 (1173)
Q Consensus 401 ~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al 480 (1173)
..|++++..+|.++.++..+|.+|...|++++|+..|+++++.+|+++.++.. ++.++...|++++|+..|++++
T Consensus 291 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 291 ----NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp ----GHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH-HHHHTTTTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777788888899999999999999999999999999999999888888 6768888999888877666555
Q ss_pred hcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 045024 481 QILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVP 560 (1173)
Q Consensus 481 ~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~ 560 (1173)
+ ..|+++.++..+|.++...|++++|+..|++++......+.
T Consensus 366 ~-----------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--- 407 (514)
T 2gw1_A 366 R-----------------------------------KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--- 407 (514)
T ss_dssp H-----------------------------------HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS---
T ss_pred H-----------------------------------HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch---
Confidence 4 45677889999999999999999999999999766443322
Q ss_pred CCchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 561 NSHFQDISINLARSLSR---AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 561 ~~~~~~~~~~La~~~~~---~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
......++..+|.++.. .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..|.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 22234589999999999 999999999999999999999999999999999999999999999999998884
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.1e-30 Score=305.96 Aligned_cols=339 Identities=15% Similarity=0.095 Sum_probs=280.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVS 86 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~ 86 (1173)
+...+.+++..+|+++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHh
Confidence 4677889999999999999999999999998 9999999999999999999999999999999 9999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAF---WAFRRL------------GYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l------------a~~~~~~g~~~~A~~~l~~ 151 (1173)
.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 776655 6669999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 152 AIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 152 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
++...|.++.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++...+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 248 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSA 311 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (1173)
..++.+... .. ....+..+
T Consensus 249 ~~~~~~~~~------------------~~------------------~~~~~~~~------------------------- 267 (450)
T 2y4t_A 249 AHYKQVKKL------------------NK------------------LIESAEEL------------------------- 267 (450)
T ss_dssp HHHHHHHHH------------------HH------------------HHHHHHHH-------------------------
T ss_pred HHHHHHHHH------------------HH------------------HHHHHHHH-------------------------
Confidence 544322110 00 00011111
Q ss_pred hhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCH
Q 045024 312 SIVSWKTTCLMAAISSKSSYQRALYLAPWQAN----IYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNC 387 (1173)
Q Consensus 312 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~ 387 (1173)
...+.+++|+..|+++++..|+++. ++..+|.++...|++++|
T Consensus 268 -------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A-------------------------- 314 (450)
T 2y4t_A 268 -------IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA-------------------------- 314 (450)
T ss_dssp -------HHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH--------------------------
T ss_pred -------HHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH--------------------------
Confidence 1122355778888888888887744 566777777766666665
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHH
Q 045024 388 QFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAG 457 (1173)
Q Consensus 388 ~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~ 457 (1173)
...++++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 315 ----------------~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 315 ----------------IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp ----------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred ----------------HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 345667777778888888888888888888888888888888888888877776
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=2.4e-29 Score=300.73 Aligned_cols=331 Identities=16% Similarity=0.101 Sum_probs=267.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
...+...+.+++..+|.++..++.+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLA-AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567778889999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP---HLWEAL------------GLAYHRLGMFSAAIKSY 183 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~ 183 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|++++|+..|
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999988 776655 66699999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
+++++..|.+..++..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~---------- 229 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-------HEL---------- 229 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-------HHH----------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHH----------
Confidence 999999999999999999999999999999999999999999999988888888877655 333
Q ss_pred HHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHH
Q 045024 264 VAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQAN 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 343 (1173)
|+..|++++...|++..
T Consensus 230 ---------------------------------------------------------------A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 230 ---------------------------------------------------------------SLSEVRECLKLDQDHKR 246 (450)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHCTTCHH
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhCCChHH
Confidence 44444444455555554
Q ss_pred HHHHH------------HHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHH
Q 045024 344 IYTDI------------AITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGL 411 (1173)
Q Consensus 344 ~~~~l------------a~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal 411 (1173)
.+..+ +.++...|++++| ...|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A------------------------------------------~~~~~~~l 284 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDA------------------------------------------TSKYESVM 284 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHH------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHH------------------------------------------HHHHHHHH
Confidence 44333 5555555555554 44556666
Q ss_pred hcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-h
Q 045024 412 QLDVSLA----DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-A 486 (1173)
Q Consensus 412 ~l~p~~~----~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~ 486 (1173)
...|+++ .++..+|.++...|++++|+..|+++++.+|+++.+|.. ++.++...|++++|+..|+++++++|. +
T Consensus 285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD-RAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 6666653 477888999999999999999999999999998888888 666888899999988888888888774 3
Q ss_pred HHHHHHH
Q 045024 487 EFQIGLA 493 (1173)
Q Consensus 487 ~~~~~la 493 (1173)
..+..++
T Consensus 364 ~~~~~l~ 370 (450)
T 2y4t_A 364 QIREGLE 370 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=4.5e-29 Score=305.56 Aligned_cols=386 Identities=12% Similarity=0.039 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+ ++
T Consensus 43 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~-~~ 119 (537)
T 3fp2_A 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIKPDHSKALLRRASANES-LGNFTDAMFDLS-VL 119 (537)
T ss_dssp -CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCHHHHHHHHH-HH
Confidence 45999999999999999999999999999998 9999999999999999999999999999999 999999999995 88
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------------------------------------HHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------------------------------------FWA 128 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------------------~~a 128 (1173)
..+|+....+. ..+...+...+|+..+++++...|.. ...
T Consensus 120 ~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 120 SLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp C--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred hcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 88887765532 23334445567777777776653321 112
Q ss_pred HHHHHH--------HHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 129 FRRLGY--------LQLHHKKWSEAVQSLQHAIRGYPTSPH-------LWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 129 ~~~la~--------~~~~~g~~~~A~~~l~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
...++. .....|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-
Confidence 222222 233346888999999999988888755 4677788888888999999999999998888
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcC
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAG 273 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~ 273 (1173)
..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..++++++ ..+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~-------~~~ 341 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-------YKNAKEDFQKAQS-------LNP 341 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHH-------HCT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHH-------hCC
Confidence 88888899999999999999999999999889888888888888887665 3333333322222 223
Q ss_pred ChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 045024 274 NMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSD 353 (1173)
Q Consensus 274 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~ 353 (1173)
.....+..+|.++...+ ++++|+..|+++++..|+++.++..+|.++.
T Consensus 342 ~~~~~~~~la~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQG--------------------------------KFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp TCSHHHHHHHHHHHHTT--------------------------------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 22233333333332222 2345555555666666666666666666665
Q ss_pred HHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH------HHHHHHHHH
Q 045024 354 LIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA------DAWAHIGKL 427 (1173)
Q Consensus 354 ~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~------~a~~~Lg~~ 427 (1173)
..|++++| ...|+++++.+|+++ ..+..+|.+
T Consensus 390 ~~g~~~~A------------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 390 DRGDFDTA------------------------------------------IKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HTTCHHHH------------------------------------------HHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HhCCHHHH------------------------------------------HHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 55555555 444455554444332 335667788
Q ss_pred HHHc----------CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchH
Q 045024 428 YGEV----------GEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAE 487 (1173)
Q Consensus 428 y~~~----------g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~ 487 (1173)
+... |++++|+..|+++++.+|+++.++.. ++.++...|++++|++.|++++++.|...
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG-LAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888 99999999999999999999998888 67799999999999999999999988543
No 11
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=4.4e-29 Score=300.83 Aligned_cols=386 Identities=14% Similarity=0.035 Sum_probs=271.7
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC---
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKL---------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--- 88 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--- 88 (1173)
.+..+..+|.++..+|+ +++|++.|++++++ +|....++..+|.+|.. +|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~-~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH-MGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhHhc
Confidence 35667788888888887 88888888888765 56677788888888888 888888888888888753
Q ss_pred -----CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCC
Q 045024 89 -----PDDSVSGEALCELLEHG--GKESLEVVVCREASDKSPRAFWAFRRLGYLQLH---HKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 89 -----p~~~~a~~~La~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~l~~al~~~p~ 158 (1173)
+..+.++..+|..+... +++++|+.+|+++++.+|+++.++..+|.++.. .++.++|+..++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 34566777777666554 468888888888888888888888888877544 46677888888888888888
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHH
Q 045024 159 SPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGL 234 (1173)
Q Consensus 159 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 234 (1173)
++.++..+|..+.. .|++++|++.+++++..+|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 88888888766654 45677888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhH
Q 045024 235 ASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIV 314 (1173)
Q Consensus 235 a~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 314 (1173)
|.++...+.........
T Consensus 288 g~~y~~~~~~~~~~~~~--------------------------------------------------------------- 304 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLREN--------------------------------------------------------------- 304 (472)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHH---------------------------------------------------------------
Confidence 77665433310000000
Q ss_pred hhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 315 SWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLG 394 (1173)
Q Consensus 315 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg 394 (1173)
..+......+
T Consensus 305 --------------------------------~~~~~~~~~~-------------------------------------- 314 (472)
T 4g1t_A 305 --------------------------------GMYGKRKLLE-------------------------------------- 314 (472)
T ss_dssp -----------------------------------CHHHHHH--------------------------------------
T ss_pred --------------------------------HHHHHHHHHh--------------------------------------
Confidence 0000000000
Q ss_pred HhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhH---HHHhHHHHHHhcCCHHH
Q 045024 395 CLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALP---WAGMSADVQASESLVDD 471 (1173)
Q Consensus 395 ~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a---~~~l~a~~~~~~g~~~e 471 (1173)
....+...|+++++.+|.++.++..+|.+|...|++++|+..|+++++++|++... +..++...+...|++++
T Consensus 315 ----~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 315 ----LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp ----HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred ----hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 01233456777777788888888999999999999999999999999988876443 33433334457899999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 045024 472 AFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYA 551 (1173)
Q Consensus 472 A~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l 551 (1173)
|+..|++++++.|........ ...+...++++++.+|+++.++..+|.++...|++++|+++|++|+++
T Consensus 391 Ai~~y~kal~i~~~~~~~~~~-----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEKM-----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHHH-----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHHH-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999998864322211 124556778899999999999999999999999999999999999766
Q ss_pred hhcCC
Q 045024 552 ISSSS 556 (1173)
Q Consensus 552 ~~~~p 556 (1173)
....|
T Consensus 460 ~~~~p 464 (472)
T 4g1t_A 460 GSLIP 464 (472)
T ss_dssp -----
T ss_pred CCCCC
Confidence 44333
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2.6e-28 Score=281.16 Aligned_cols=330 Identities=15% Similarity=0.094 Sum_probs=275.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 46789999999999998 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSP---RAFWAFRRL------------GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~l------------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
++...|++++|+..++++++..| +++.++..+ |.++...|++++|+..++++++.+|.++.++..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 99999999999999999999999 888888777 789999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++...+..+..+......
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL-- 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999998765433222100000
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAI 325 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (1173)
...+..+ ...++++
T Consensus 238 ----------------------------------~~~a~~~--------------------------------~~~~~~~ 251 (359)
T 3ieg_A 238 ----------------------------------IESAEEL--------------------------------IRDGRYT 251 (359)
T ss_dssp ----------------------------------HHHHHHH--------------------------------HHTTCHH
T ss_pred ----------------------------------HHHHHHH--------------------------------HHcCCHH
Confidence 0001111 1122345
Q ss_pred HHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH
Q 045024 326 SSKSSYQRALYLAPWQANI----YTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG 401 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~~----~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~ 401 (1173)
+|+..|+++++..|+++.. +..+|.++...|++++|
T Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A---------------------------------------- 291 (359)
T 3ieg_A 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA---------------------------------------- 291 (359)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH----------------------------------------
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH----------------------------------------
Confidence 7777888888888877643 44566666666666555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHH
Q 045024 402 LKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463 (1173)
Q Consensus 402 ~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~ 463 (1173)
...|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|+++.++.. ++.+.
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~ 350 (359)
T 3ieg_A 292 --IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG-LEKAQ 350 (359)
T ss_dssp --HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH-HHHHH
T ss_pred --HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH-HHHHH
Confidence 345666667777778888888888888888888888888888888888777666 44344
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=4.3e-27 Score=270.93 Aligned_cols=306 Identities=16% Similarity=0.107 Sum_probs=259.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
+++.++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLA-AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 46789999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYP---TSPHLWEAL------------GLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..++++++..|+++.++..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999 888888777 7999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWK 280 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~ 280 (1173)
|.++...|++++|+..++++++..|+++.++..+|.++...|+ ++
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~---------------------------- 205 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD-------HE---------------------------- 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC-------HH----------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HH----------------------------
Confidence 9999999999999999999999999999988888888777655 33
Q ss_pred HhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHH------------HH
Q 045024 281 LHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYT------------DI 348 (1173)
Q Consensus 281 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~------------~l 348 (1173)
+|+..|+++++..|++..++. .+
T Consensus 206 ---------------------------------------------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 206 ---------------------------------------------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554433 23
Q ss_pred HHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcH----HHHHHH
Q 045024 349 AITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLA----DAWAHI 424 (1173)
Q Consensus 349 a~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~----~a~~~L 424 (1173)
|.++...|++++| ...|+++++..|+++ .++..+
T Consensus 241 a~~~~~~~~~~~A------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 241 AEELIRDGRYTDA------------------------------------------TSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHTTCHHHH------------------------------------------HHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHH------------------------------------------HHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4444445554444 445555666666655 346678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 425 GKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
|.++...|++++|+..|+++++.+|+++.++.. .+.++...|++++|+..|+++++++|.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD-RAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888888888888888888888 666888888888888888888887764
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-26 Score=279.75 Aligned_cols=385 Identities=14% Similarity=-0.008 Sum_probs=250.3
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL---------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKS---- 122 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~---------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~---- 122 (1173)
.+..+..+|.++.. .|++++|++.|++++++ +|....++..+|.+|..+|++++|+.++++++++.
T Consensus 50 ~a~~yn~Lg~~~~~-~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHL-KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 35678889999999 99999999999999876 45666678888888888888888888888887652
Q ss_pred ----CCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC
Q 045024 123 ----PRAFWAFRRLGYLQLHH--KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR---LGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 123 ----p~~~~a~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+..+.++..+|.++... +++++|+..|+++++++|+++.++..++.++.. .+++++|++.|+++++++|++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 23466677777666554 457788888888888888877777777776543 466677777777777777777
Q ss_pred hHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 194 IFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 194 ~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
..++..+|..+.. .|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-------------------------- 262 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-------------------------- 262 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------------------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--------------------------
Confidence 7777777665544 3566777777777777777777777666666665544
Q ss_pred hhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 045024 270 RLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIA 349 (1173)
Q Consensus 270 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la 349 (1173)
+++|+..|+++++.+|+++.++..+|
T Consensus 263 ------------------------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 263 ------------------------------------------------------PDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 23455666677777777777777777
Q ss_pred HHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 045024 350 ITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYG 429 (1173)
Q Consensus 350 ~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~ 429 (1173)
.+|...+....+. .....+....
T Consensus 289 ~~y~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~ 311 (472)
T 4g1t_A 289 CCYRAKVFQVMNL---------------------------------------------------------RENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHHC---------------------------------------------------------------CHHH
T ss_pred HHHHHHHHHhhhH---------------------------------------------------------HHHHHHHHHH
Confidence 7664332221110 0111222223
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHH
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFG 509 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~ 509 (1173)
..+.+++|+..|+++++++|++..++.. +|.++...|++++|++.|++++++.|.+...
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-------------------- 370 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSI-LASLHALADQYEEAEYYFQKEFSKELTPVAK-------------------- 370 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHH-HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH--------------------
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhh-HHHHHHHhccHHHHHHHHHHHHhcCCCChHH--------------------
Confidence 3445789999999999999999999998 6779999999999999999999887743211
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 045024 510 AIQQAIQRGPHYPESHNLYGLV-CEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVREC 588 (1173)
Q Consensus 510 ~l~~al~~~P~~~~a~~~lg~i-~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~ 588 (1173)
...+..+|.+ ....|++++|+..|++++++ .|++.. ..+....+...+
T Consensus 371 ------------~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~----------------~~~~~~~l~~~~ 419 (472)
T 4g1t_A 371 ------------QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSRE----------------KEKMKDKLQKIA 419 (472)
T ss_dssp ------------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHH----------------HHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHH----------------HHHHHHHHHHHH
Confidence 1122333432 34566777777777777433 222100 111223344556
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 589 ESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 589 ~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
++.++.+|.++.++..+|.+|...|++++|++.|+++++..|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 666677777777777777777777777777777777777655
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=8.2e-26 Score=257.30 Aligned_cols=271 Identities=15% Similarity=0.096 Sum_probs=240.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Q 045024 9 LQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS 88 (1173)
Q Consensus 9 ~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~ 88 (1173)
....+.+...|+++..++.+|..++..|+ +++|+..|+++++.+|.+..++..++.++.. .|++++|+..++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~ 86 (330)
T 3hym_B 9 TVIPESVDGLQENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-LNKANELFYLSHKLVDLY 86 (330)
T ss_dssp -----------CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-HTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-hhhHHHHHHHHHHHHHhC
Confidence 34456677788889999999999999987 9999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 89 PDDSVSGEALCELLEHGG-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
|+++.++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc---------CCCHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS---------SENVSAHYGLASGL 238 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~la~~~ 238 (1173)
.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.. |....++..+|.++
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 55556676777766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHh
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKT 318 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (1173)
...|+
T Consensus 247 ~~~g~--------------------------------------------------------------------------- 251 (330)
T 3hym_B 247 RKLKK--------------------------------------------------------------------------- 251 (330)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred HHhcC---------------------------------------------------------------------------
Confidence 65544
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHh
Q 045024 319 TCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEA 361 (1173)
Q Consensus 319 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA 361 (1173)
+++|+..|+++++..|+++.++..+|.++...|++++|
T Consensus 252 -----~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 252 -----YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp -----HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 23566777777788888888888899888888888777
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=256.36 Aligned_cols=310 Identities=15% Similarity=0.047 Sum_probs=257.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
....+...|+++..+..+|..+.. .|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp ---------CCCTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hHHHHhhchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 345556678888899999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHK-KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
+.++..+|.++...| ++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|++..++..+|.++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhch
Q 045024 205 LMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGD 284 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~ 284 (1173)
...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|...++++++..+.....
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~------------- 229 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-------WKTAEKWFLDALEKIKAIGNE------------- 229 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHTTTSCS-------------
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-------HHHHHHHHHHHHHHhhhcccc-------------
Confidence 999999999999999999999999888888877776555 555555555544432211000
Q ss_pred HHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhh
Q 045024 285 IQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGH 364 (1173)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 364 (1173)
...|..+.++..+|.++...|++++|
T Consensus 230 ---------------------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A--- 255 (330)
T 3hym_B 230 ---------------------------------------------------VTVDKWEPLLNNLGHVCRKLKKYAEA--- 255 (330)
T ss_dssp ---------------------------------------------------CTTTTCCHHHHHHHHHHHHTTCHHHH---
T ss_pred ---------------------------------------------------ccccHHHHHHHHHHHHHHHhcCHHHH---
Confidence 00155667888888888888877766
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 365 YQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSA 444 (1173)
Q Consensus 365 ~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~a 444 (1173)
...|+++++.+|+++.++..+|.+|...|++++|+..|+++
T Consensus 256 ---------------------------------------~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 ---------------------------------------LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp ---------------------------------------HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred ---------------------------------------HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34666777777888888888888888889999999999988
Q ss_pred HhhCCCChhHHHHhHHHHH-HhcCCHH
Q 045024 445 RSIDPSLALPWAGMSADVQ-ASESLVD 470 (1173)
Q Consensus 445 l~~~P~~~~a~~~l~a~~~-~~~g~~~ 470 (1173)
++++|+++.++.. ++.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~-l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTM-LGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHH-HHHHHHTTTTC--
T ss_pred HccCCCchHHHHH-HHHHHHHHhCchh
Confidence 8888888888877 55556 4555543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.6e-23 Score=256.53 Aligned_cols=449 Identities=11% Similarity=0.015 Sum_probs=285.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 46 FVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 46 ~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
|+++++.+|.+..+|..++.. .. .|++++|...|+++++.+|.+...|..++..+...|++++|...|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~-~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~ 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HH-SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence 567777788888888777774 66 77888888888888888888888888888888778888888888888887777 4
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 045024 126 FWAFRRLGY-LQLHHKKWSEAVQ----SLQHAIRG---YPTSPHLWEALGLAYHR---------LGMFSAAIKSYGRAIE 188 (1173)
Q Consensus 126 ~~a~~~la~-~~~~~g~~~~A~~----~l~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~ 188 (1173)
...|..++. .....|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|+..|+++++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 566766664 3344566665554 66666543 45566666666666554 5666666666666666
Q ss_pred hCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 189 LDDTSI--FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 189 ~~p~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.|... ..+...+......|. . .+...+ ....+.+..|...+.+......
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~-~----------------------~~~~~l-----~~~~~~~~~A~~~~~~~~~~~~ 209 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINI-H----------------------LAKKMI-----EDRSRDYMNARRVAKEYETVMK 209 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCH-H----------------------HHHHHH-----HTTHHHHHHHHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhch-h----------------------HHHHHH-----HHhhHHHHHHHHHHHHHHHHHH
Confidence 34332 111111111111110 0 000000 0012334444443333221111
Q ss_pred HHhh----hcCCh-------HHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHH
Q 045024 267 ANTR----LAGNM-------SCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRAL 335 (1173)
Q Consensus 267 ~~~~----~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 335 (1173)
.... ..+.. ...|......... . .. . .. ........++..|++++
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~--~--------~~-~-----~~--------~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS--N--------PL-R-----TE--------DQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH--C--------SS-C-----CS--------CSHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHc--C--------Cc-c-----CC--------cchhHHHHHHHHHHHHH
Confidence 1110 01110 1122211111100 0 00 0 00 00001236788999999
Q ss_pred hcCCCCHHHHHHHHHHHHH-------HhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHH
Q 045024 336 YLAPWQANIYTDIAITSDL-------IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALI 408 (1173)
Q Consensus 336 ~l~p~~~~~~~~la~~~~~-------~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~ 408 (1173)
...|.++.+|..++..+.. .|+++.|.. ....+...|+
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~-----------------------------------~~~~A~~~~~ 310 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL-----------------------------------FSDEAANIYE 310 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-----------------------------------HHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh-----------------------------------hhHHHHHHHH
Confidence 9999999999999998875 344432200 0135677899
Q ss_pred HHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCch
Q 045024 409 RGLQ-LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLA-LPWAGMSADVQASESLVDDAFESCLRAVQILPLA 486 (1173)
Q Consensus 409 kal~-l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~-~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~ 486 (1173)
++++ ..|+++.+|..+|.++...|++++|...|+++++++|+++ .+|.. .+..+.+.|++++|++.|+++++..|
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~-- 387 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-- 387 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCTT--
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHH-HHHHHHHhcCHHHHHHHHHHHHhccC--
Confidence 9997 7999999999999999999999999999999999999985 58888 56677788999999988888877654
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchH
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLV-CEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQ 565 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i-~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~ 565 (1173)
.....+...+.+ +...|++++|+.+|+++++. .|+ ..
T Consensus 388 ---------------------------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~------~~ 425 (530)
T 2ooe_A 388 ---------------------------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGD------IP 425 (530)
T ss_dssp ---------------------------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTT------CH
T ss_pred ---------------------------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCC------CH
Confidence 233333344443 33578888888888888654 232 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 566 DISINLARSLSRAGNALDAVRECESLERQGMLDAE----VLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 566 ~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~----~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.++..++..+...|++++|...|++++...|.++. .|...+......|+.+.+..+++++++..|
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 47788888888888888888888888877665543 666667777778888888888888888776
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=6.9e-23 Score=250.98 Aligned_cols=427 Identities=12% Similarity=0.036 Sum_probs=264.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC
Q 045024 11 LEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 11 l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~ 90 (1173)
|+++++.+|.+..+|..++.. ...++ +++|...|+++++.+|.++..|..+|..+.. .|++++|...|++++...|
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~-~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQFPSSGRFWKLYIEAEIK-AKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCC-
Confidence 688999999999999999984 66666 9999999999999999999999999999999 9999999999999999999
Q ss_pred CHHHHHHHHH-HHHHCCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 045024 91 DSVSGEALCE-LLEHGGKESLEVV----VCREASDK---SPRAFWAFRRLGYLQLH---------HKKWSEAVQSLQHAI 153 (1173)
Q Consensus 91 ~~~a~~~La~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~g~~~~A~~~l~~al 153 (1173)
+...|..++. +....|++++|.+ .|++++.. +|.+...|...+..... .|++++|..+|++++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 6778888885 4456788877765 77777654 56678888888887765 789999999999999
Q ss_pred HhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------hHHHHHH
Q 045024 154 RGYPTSP--HLWEALGLAY-------------HRLGMFSAAIKSYGR------AIEL-----DDTS-------IFPLLES 200 (1173)
Q Consensus 154 ~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~a~~~l 200 (1173)
. .|... ..|....... ...+++..|...+.. .++. .|.. ...|...
T Consensus 158 ~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 V-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp T-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred h-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 9 57542 3333322221 134567888877765 3332 2321 2344443
Q ss_pred HHHHHHc----CCh----HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh-h
Q 045024 201 GNIFLML----GNF----RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR-L 271 (1173)
Q Consensus 201 a~~~~~~----g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~-~ 271 (1173)
....... ++. .+++..|++++...|.++.+|+.++..+..........|+++.|....++|...+.+... .
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3332221 232 478899999999999999999999998876433222345554332222233333333332 2
Q ss_pred cCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q 045024 272 AGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQA-NIYTDIAI 350 (1173)
Q Consensus 272 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~la~ 350 (1173)
.|....+|...+.+....++ .++|+..|+++++..|.++ .+|...+.
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~--------------------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 364 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMK--------------------------------YEKVHSIYNRLLAIEDIDPTLVYIQYMK 364 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTC--------------------------------HHHHHHHHHHHHHSSSSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCC--------------------------------HHHHHHHHHHHhCccccCchHHHHHHHH
Confidence 34444444444433322221 3344455555555444443 34444444
Q ss_pred HHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHH-HH
Q 045024 351 TSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKL-YG 429 (1173)
Q Consensus 351 ~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~-y~ 429 (1173)
.+.+.|+++ .+...|.++++..|.....+...+.+ +.
T Consensus 365 ~~~~~~~~~------------------------------------------~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 365 FARRAEGIK------------------------------------------SGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHH------------------------------------------HHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHhcCHH------------------------------------------HHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 444444444 34445555555555444444444433 22
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhCCCCh
Q 045024 430 EVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL-A----EFQIGLAKLAKLSGHLSS 504 (1173)
Q Consensus 430 ~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~-~----~~~~~la~l~~~~g~~~~ 504 (1173)
..|++++|...|+++++.+|+++..|.. .+..+...|+.++|..+|++++...|. + ..+..+..+....|+ .
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~-~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~--~ 479 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLA-YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD--L 479 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC--H
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHH-HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC--H
Confidence 3555555555555555555555555555 344555555555555555555555331 1 133333444333343 3
Q ss_pred HHHHHHHHHHHHhCC
Q 045024 505 SQVFGAIQQAIQRGP 519 (1173)
Q Consensus 505 ~~A~~~l~~al~~~P 519 (1173)
+.+...++++++..|
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 455555555555555
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=2.4e-25 Score=258.28 Aligned_cols=303 Identities=18% Similarity=0.128 Sum_probs=247.3
Q ss_pred HHHHccCcHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 045024 31 HLWENSESKEKAAE-HFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~-~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~ 105 (1173)
++...++ |++|+. .|++++...|+++ ..++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...
T Consensus 34 ~~~~~~~-~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSD-YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHH-HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4555566 999999 9999998888764 568899999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE----------------ALGLA 169 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----------------~la~~ 169 (1173)
|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.+...+. .++.+
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776654 46666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 045024 170 YHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247 (1173)
Q Consensus 170 ~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a 247 (1173)
+ ..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---- 266 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---- 266 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC----
Confidence 6 899999999999999999999 789999999999999999999999999999999998888888777776555
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 248 ~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
+++|
T Consensus 267 ----------------------------------------------------------------------------~~~A 270 (368)
T 1fch_A 267 ----------------------------------------------------------------------------SEEA 270 (368)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2356
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHH
Q 045024 328 KSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHAL 407 (1173)
Q Consensus 328 ~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~ 407 (1173)
+..|+++++++|+++.++..+|.++...|++++|.. .+.+++...|++....
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~~~~~~~~----------------- 322 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE-----------HFLEALNMQRKSRGPR----------------- 322 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHHHTC---------------------
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCCCCcc-----------------
Confidence 677788888889999999999999999999988833 3444444444432100
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 045024 408 IRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI 447 (1173)
Q Consensus 408 ~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~ 447 (1173)
-...|..+.+|..+|.+|...|++++|...++++++.
T Consensus 323 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 323 ---GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred ---ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 0113344899999999999999999999999877654
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2.8e-22 Score=242.99 Aligned_cols=399 Identities=14% Similarity=0.081 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHH----ccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCC
Q 045024 19 PDDPSLHLDLGLHLWE----NSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~----~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
++++.+++.+|..|.. .++ +++|+.+|+++++. .++.+++.+|.+|.. ..+++++|+.+|+++.+. .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 4566666777766665 444 66777777766654 456666667766654 135666777777766653 45
Q ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 045024 92 SVSGEALCELLEH----GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 92 ~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 163 (1173)
+.+++.+|.+|.. .+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+..|+++++. +++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 6666666766666 66677777777666553 456666666766666 66677777777666654 456666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 164 EALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 164 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
+.+|.+|.. .+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+.+.++
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 667776666 66677777777666653 355666666666665 66666777666666553 3344444444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 236 SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 236 ~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
.++.. |.
T Consensus 263 ~~y~~-g~------------------------------------------------------------------------ 269 (490)
T 2xm6_A 263 YILEQ-GL------------------------------------------------------------------------ 269 (490)
T ss_dssp HHHHH-TT------------------------------------------------------------------------
T ss_pred HHHHC-CC------------------------------------------------------------------------
Confidence 44332 00
Q ss_pred hHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----hhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 316 WKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLI-----YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
...++.++|+..|+++.+. .++.+++.++.++... ++++
T Consensus 270 ---~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~------------------------------- 313 (490)
T 2xm6_A 270 ---AGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE------------------------------- 313 (490)
T ss_dssp ---TSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH-------------------------------
T ss_pred ---CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH-------------------------------
Confidence 0001133566666666544 4566666666666543 2332
Q ss_pred HHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh--
Q 045024 391 VTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVG---EKKLARQAFDSARSIDPSLALPWAGMSADVQAS-- 465 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g---~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~-- 465 (1173)
.+.+.|+++++. +++.+++.+|.+|...| ++++|+.+|+++++. .++.+++. ++.+|..
T Consensus 314 -----------~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~ 377 (490)
T 2xm6_A 314 -----------QAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFN-LGNALLQGK 377 (490)
T ss_dssp -----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTS
T ss_pred -----------HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCC
Confidence 334455555553 35677777777777755 677788888877765 45667777 5556666
Q ss_pred --cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 045024 466 --ESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQ 539 (1173)
Q Consensus 466 --~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~ 539 (1173)
.+++++|+.+|+++++ .+++.+++.+|.+|.. .++++
T Consensus 378 g~~~~~~~A~~~~~~A~~-------------------------------------~~~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAE-------------------------------------QGLSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------------------------------TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCCCHHHHHHHHHHHHh-------------------------------------CCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 6677777776666543 2457889999999998 89999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q 045024 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE 600 (1173)
Q Consensus 540 ~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~ 600 (1173)
+|+.+|+++++.- |+ .|....+..+++.++.. +.+.|.+...+..+..|....
T Consensus 421 ~A~~~~~~A~~~~---~~---~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~ 473 (490)
T 2xm6_A 421 QAWAWFDTASTND---MN---LFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAW 473 (490)
T ss_dssp HHHHHHHHHHHHH---CC---HHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHCC---CC---CcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997552 11 12345577888877654 445666666666665555443
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2.2e-22 Score=243.90 Aligned_cols=403 Identities=13% Similarity=0.026 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHH
Q 045024 41 KAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVV 113 (1173)
Q Consensus 41 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~ 113 (1173)
.++..+.++. .+.++.+++.+|.+|.. ..+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3456666654 36789999999999875 147899999999999876 678899999999999 899999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGR 185 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 185 (1173)
.|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. +++.++..+|.+|.. .+++++|+..|++
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999875 578899999999998 88999999999999775 578999999999998 8899999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 045024 186 AIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDA 261 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~A 261 (1173)
+++. +++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+.+.++.++..-.. ..++
T Consensus 177 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g---~~~~----------- 238 (490)
T 2xm6_A 177 AAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIG---VTQD----------- 238 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS---SCCC-----------
T ss_pred HHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---CCCC-----------
Confidence 9886 578999999999998 89999999999999875 456666666665543000 0111
Q ss_pred HHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCC
Q 045024 262 CKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQ 341 (1173)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 341 (1173)
.++|+..|+++++. .+
T Consensus 239 --------------------------------------------------------------~~~A~~~~~~a~~~--~~ 254 (490)
T 2xm6_A 239 --------------------------------------------------------------YTQSRVLFSQSAEQ--GN 254 (490)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTT--TC
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHC--CC
Confidence 23566666666654 45
Q ss_pred HHHHHHHHHHHHH----HhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCc
Q 045024 342 ANIYTDIAITSDL----IYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSL 417 (1173)
Q Consensus 342 ~~~~~~la~~~~~----~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~ 417 (1173)
+.+++.+|.++.. .+++ ..+.+.|+++.+. ++
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~------------------------------------------~~A~~~~~~a~~~--~~ 290 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEP------------------------------------------LKALEWYRKSAEQ--GN 290 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCH------------------------------------------HHHHHHHHHHHTT--TC
T ss_pred HHHHHHHHHHHHCCCCCCCCH------------------------------------------HHHHHHHHHHHHc--CC
Confidence 6677777777654 2333 2334556666543 46
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcC---CHHHHHHHHHHHHhcCCchHHH
Q 045024 418 ADAWAHIGKLYGEV-----GEKKLARQAFDSARSIDPSLALPWAGMSADVQASES---LVDDAFESCLRAVQILPLAEFQ 489 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~-----g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g---~~~eA~~~~~~al~~~p~~~~~ 489 (1173)
+.+++.+|.+|... +++++|+.+|+++.+. .++.+++. ++.+|...| ++++|+.+|+++
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~-lg~~y~~~g~~~~~~~A~~~~~~a---------- 357 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQAN-LGAIYFRLGSEEEHKKAVEWFRKA---------- 357 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHSCCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHH-HHHHHHhCCCcccHHHHHHHHHHH----------
Confidence 77888888888887 8888888888888775 44567766 555666545 455555555544
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcCCCCCCCCchH
Q 045024 490 IGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARYAISSSSGTVPNSHFQ 565 (1173)
Q Consensus 490 ~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~ 565 (1173)
++. +++.+++.+|.+|.. .+++++|+.+|+++.+. + ..
T Consensus 358 -------------------------~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~------~~ 399 (490)
T 2xm6_A 358 -------------------------AAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----G------LS 399 (490)
T ss_dssp -------------------------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T------CH
T ss_pred -------------------------HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----C------CH
Confidence 443 568899999999999 89999999999999642 1 24
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 566 DISINLARSLSR----AGNALDAVRECESLERQGML---DAEVLQVYAFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 566 ~~~~~La~~~~~----~g~~~eAi~~~~~~~~~~p~---~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
.+++++|.+|.. .+++++|+..|+++++.+|+ ++.+...+|.++.. +.+.|.+..++.++..|
T Consensus 400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHH
Confidence 589999999998 89999999999999999854 77788888877654 34555555555555433
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.1e-24 Score=252.56 Aligned_cols=290 Identities=16% Similarity=0.224 Sum_probs=250.6
Q ss_pred HHH-HHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHH
Q 045024 7 LLL-QLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCY 81 (1173)
Q Consensus 7 Ai~-~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~ 81 (1173)
|+. .|++++...|+++ ..++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|
T Consensus 44 a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~ 121 (368)
T 1fch_A 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NEQELLAISAL 121 (368)
T ss_dssp --CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CcCHHHHHHHH
Confidence 466 7888888888764 568999999999997 9999999999999999999999999999999 99999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH----------------HHHHHHHHcCCHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR----------------RLGYLQLHHKKWSEA 145 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----------------~la~~~~~~g~~~~A 145 (1173)
+++++.+|++..++..+|.++...|++++|+..+++++...|++...+. .++.++ ..|++++|
T Consensus 122 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A 200 (368)
T 1fch_A 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEV 200 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHH
Confidence 9999999999999999999999999999999999999999998766654 466666 99999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 146 VQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 146 ~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+..|+++++.+|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchh
Q 045024 224 SSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLE 303 (1173)
Q Consensus 224 ~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 303 (1173)
+|+++.++..+|.++...|+ +++|...++++++..+.....
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~-------------------------------- 321 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGA-------HREAVEHFLEALNMQRKSRGP-------------------------------- 321 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTC-------HHHHHHHHHHHHHHHHTC-----------------------------------
T ss_pred CCCcHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhCCCCCCc--------------------------------
Confidence 99999888888888777655 555555555555443321000
Q ss_pred hhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 045024 304 FDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSA 368 (1173)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~ 368 (1173)
.-...|....+|..++.++...|++++|.....+.
T Consensus 322 ------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 ------------------------------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---------------------------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ------------------------------cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 00123445889999999999999999996654443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=252.29 Aligned_cols=249 Identities=17% Similarity=0.212 Sum_probs=216.0
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 9 LQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 9 ~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..+.+.+...|+++ ..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGD-LPVTILFMEAAILQDPGDAEAWQFLGITQAE-NENEQAAIVALQRC 125 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 34444444555544 459999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL----------GYLQLHHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~g~~~~A~~~l~~al~ 154 (1173)
++.+|++..++..+|.++...|++++|+..++++++..|++...+..+ |.++...|++++|+..|+++++
T Consensus 126 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 126 LELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876665544 9999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 155 GYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 155 ~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
.+|+ ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 9999 89999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
.+|.++...|+ +++|...++++++..+
T Consensus 286 ~l~~~~~~~g~-------~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 286 NLGISCINLGA-------YREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHTC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-------HHHHHHHHHHHHHhCc
Confidence 88887777655 6667766666666544
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=1.3e-23 Score=244.14 Aligned_cols=266 Identities=12% Similarity=0.069 Sum_probs=239.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC-HHHHHHHHHHHHhhCCCCHH
Q 045024 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID-TQRAIKCYQRAVSLSPDDSV 93 (1173)
Q Consensus 15 l~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~-~~eA~~~~~~al~~~p~~~~ 93 (1173)
+..+|+++.++..+|.++...++ +++|+..|+++++++|++..+|+.+|.++.. .|+ +++|+..|+++++++|++..
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~-~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDER-SERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCCHH
Confidence 45678889999999999998887 9999999999999999999999999999999 996 99999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR- 172 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~- 172 (1173)
+|+.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q 045024 173 LGMFSAA-----IKSYGRAIELDDTSIFPLLESGNIFLMLG--NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQC 245 (1173)
Q Consensus 173 ~g~~~~A-----~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~ 245 (1173)
.|.+++| +..|+++++++|++..+|+.++.++...| ++++|++.++++ +.+|+++.++..++.++..+++..
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccc
Confidence 5665788 59999999999999999999999999988 699999999998 999999999999999998876310
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHH-hhhcCChHHHHHHhchHHHH
Q 045024 246 INLGAFRWGASLLEDACKVAEAN-TRLAGNMSCIWKLHGDIQLT 288 (1173)
Q Consensus 246 ~a~g~~~~A~~~l~~Al~~~~~~-~~~~~~~~~~~~~~g~~~~~ 288 (1173)
. ..+...+++|++.+... ....|.....|..++.....
T Consensus 327 ~-----~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 C-----DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp C-----SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred c-----cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 0 00111246677777777 77888888888888776654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.9e-23 Score=242.56 Aligned_cols=221 Identities=20% Similarity=0.228 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.+|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENEN-EQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccHHHHHHHHHHH
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 85 VSLSPDDSVSGEAL----------CELLEHGGKESLEVVVCREASDKSPR--AFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 85 l~~~p~~~~a~~~L----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++.+|++..++..+ |.++...|++++|+..++++++..|+ ++.++..+|.++...|++++|+..|+++
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999876665544 99999999999999999999999999 8999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+.
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998874
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1.7e-22 Score=229.37 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=204.4
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 20 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLAN-LAEAALAFEAVCQAAPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34567899999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRL--------------GY-LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
++...|++++|+..++++++..|.+...+..+ +. ++...|++++|+..++++++.+|.++.++..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999999999987777666 66 6888999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++..++..++.++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999888888777776554
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=5.8e-23 Score=220.23 Aligned_cols=200 Identities=20% Similarity=0.187 Sum_probs=178.9
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|+++.++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-YDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 7788999999999999998 9999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 99 CELLEHG-----------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 99 a~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
|.++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998864
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1.2e-22 Score=230.64 Aligned_cols=257 Identities=15% Similarity=0.139 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
..|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 446999999999999999999999999999998 9999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHH--------------HH-HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045024 85 VSLSPDDSVSGEAL--------------CE-LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSL 149 (1173)
Q Consensus 85 l~~~p~~~~a~~~L--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l 149 (1173)
++.+|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 195 (327)
T 3cv0_A 116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195 (327)
T ss_dssp HHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999998877776 66 6888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC---
Q 045024 150 QHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE--- 226 (1173)
Q Consensus 150 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 226 (1173)
+++++.+|+++.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++..|+
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 227 ---------NVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 227 ---------~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
+..++..++.++.. .|++++|...++++++.++....
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNV-------MNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHH-------TTCHHHHHHHTTCCSHHHHHHTT
T ss_pred ccccchhhcCHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhcchhhh
Confidence 55566666665555 55588888888777777766544
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=7.4e-23 Score=237.90 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=233.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHH
Q 045024 50 AKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 50 l~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~p~~~~a 128 (1173)
+..+|+++.++..+|.++.. .|++++|+..|+++++++|++..+|..+|.++...|+ +++|+..|+++++++|+++.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~-~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQR-DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhCChhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 45677788999999999999 9999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-c
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM-L 207 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~ 207 (1173)
|+.+|.++..+|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CChHHH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHh
Q 045024 208 GNFRKG-----VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLH 282 (1173)
Q Consensus 208 g~~~~A-----~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~ 282 (1173)
|.+++| +..|+++++++|++..+++.++.++...|. +++++ +++.+... ...+....++..+
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~-----~~~~~-------a~~~~~~~-~~~p~~~~al~~L 315 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-----SKYPN-------LLNQLLDL-QPSHSSPYLIAFL 315 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG-----GGCHH-------HHHHHHHH-TTTCCCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCc-----cchHH-------HHHHHHHh-ccCCCCHHHHHHH
Confidence 655888 599999999999999999999998887552 23444 44444444 5677777888888
Q ss_pred chHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhH-HHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHH
Q 045024 283 GDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLM-AAISSKSSYQRA-LYLAPWQANIYTDIAITSDLI 355 (1173)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a-l~l~p~~~~~~~~la~~~~~~ 355 (1173)
++++...++... ...+ ..++|+..|+++ ++++|.....|..++..+...
T Consensus 316 a~~~~~~~~~~~------------------------~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 316 VDIYEDMLENQC------------------------DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHTTC------------------------SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------------------cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 888866542000 0001 136899999999 999999999999999887644
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=6.5e-22 Score=212.05 Aligned_cols=188 Identities=20% Similarity=0.168 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
|.++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 2 p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYA-LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 7788999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 134 YLQLHH-----------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 134 ~~~~~~-----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
++...|++++|+..|+++++.+|+++.++..++.++...|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999888877
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=1.7e-21 Score=215.43 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----HHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD----SVSGE 96 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~----~~a~~ 96 (1173)
+++.++.+|.+++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++ .|.+ ..++.
T Consensus 2 n~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNN-YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence 35678899999999987 9999999999999999999999999999999 9999999999999999 4444 34589
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999555556799
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHhhcHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSA-HYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.....+.. ...+..++..+|..+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 999999999999876322211 2223344444444444444443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.7e-21 Score=208.19 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC-------H
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD-------S 92 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~-------~ 92 (1173)
+.+..++.+|.+++..|+ +++|+..|+++++.+ .++.++..+|.++.. .|++++|+..|+++++.+|++ .
T Consensus 3 ~~a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQ-FDEAIEHYNKAWELH-KDITYLNNRAAAEYE-KGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 356789999999999998 999999999999999 899999999999999 999999999999999998877 6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.++..+|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 88999999999999999999999999999987 4567788999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFR 252 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~ 252 (1173)
.|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...| +++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-------~~~ 224 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK-------EYA 224 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh-------hHH
Confidence 9999999999999999999999999999999999999999999999999999999988888777777655 478
Q ss_pred HHHHHHHHHHHHHHHH
Q 045024 253 WGASLLEDACKVAEAN 268 (1173)
Q Consensus 253 ~A~~~l~~Al~~~~~~ 268 (1173)
+|...++++++..+..
T Consensus 225 ~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 225 SALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhh
Confidence 8888888888776543
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.9e-20 Score=210.13 Aligned_cols=277 Identities=14% Similarity=0.046 Sum_probs=224.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 66 YYTRFSIDTQRAIKCYQRAVSLSPDD-SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 66 ~~~~~~g~~~eA~~~~~~al~~~p~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
-.+. .|+|..|+..+++....+|++ .++...++++|...|++++|+..++. .+|.+..++..++..+...|++++
T Consensus 8 ~~~~-~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFY-IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHH-TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHH-HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445 799999999988887777776 35678888999999999999987765 255577788889999999999999
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 145 AVQSLQHAIRG--YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 145 A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |+++.++..+|.++..+|++++|+..|+++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998875 599999999999999999999999999988 88899999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhch
Q 045024 223 ISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSL 302 (1173)
Q Consensus 223 ~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l 302 (1173)
.+|++.... ++..+.....
T Consensus 159 ~~p~~~~~~--l~~a~~~l~~----------------------------------------------------------- 177 (291)
T 3mkr_A 159 QDEDATLTQ--LATAWVSLAA----------------------------------------------------------- 177 (291)
T ss_dssp HCTTCHHHH--HHHHHHHHHH-----------------------------------------------------------
T ss_pred hCcCcHHHH--HHHHHHHHHh-----------------------------------------------------------
Confidence 998875332 2222221100
Q ss_pred hhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhh
Q 045024 303 EFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLL 382 (1173)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~ 382 (1173)
..+++++|+..|+++++..|+++.+++.+|.++...|++++|
T Consensus 178 -----------------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA--------------------- 219 (291)
T 3mkr_A 178 -----------------GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA--------------------- 219 (291)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH---------------------
T ss_pred -----------------CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH---------------------
Confidence 012245788888999999999999999999999999999887
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhHHHHhHHH
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKL-ARQAFDSARSIDPSLALPWAGMSAD 461 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~-A~~~f~~al~~~P~~~~a~~~l~a~ 461 (1173)
...|++++..+|++++++.++|.++...|++++ +..+++++++++|+++.+. .
T Consensus 220 ---------------------~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~-----d 273 (291)
T 3mkr_A 220 ---------------------EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK-----E 273 (291)
T ss_dssp ---------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH-----H
T ss_pred ---------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH-----H
Confidence 447788888899999999999999999999976 5688999999999996543 2
Q ss_pred HHHhcCCHHHHHHHH
Q 045024 462 VQASESLVDDAFESC 476 (1173)
Q Consensus 462 ~~~~~g~~~eA~~~~ 476 (1173)
...+.+.++++..-|
T Consensus 274 ~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 274 YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 444566667666554
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=5.3e-21 Score=211.52 Aligned_cols=234 Identities=15% Similarity=0.068 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCCHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN----AVAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
...|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++ .|.+ +.++..+|.++.. .|++++|+.
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~ 95 (272)
T 3u4t_A 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-YDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLAIQ 95 (272)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-HHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHHHH
Confidence 3456999999999999999999999999999998 9999999999998 4443 4569999999999 999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++..++..+|.++...|++++|+..++++++.+|.++.++..+|...+..+++++|+..|+++++.+|++
T Consensus 96 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 96 QYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999955556679999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 160 PHLWEALGLAYHRLGM---FSAAIKSYGRAIELD---DTS-----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.++..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+..|+++++.+|+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 9999999999999999 999999999999886 442 36888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 045024 229 SAHYGLASGLLG 240 (1173)
Q Consensus 229 ~a~~~la~~~~~ 240 (1173)
.++-.++.+...
T Consensus 256 ~a~~~l~~~~~~ 267 (272)
T 3u4t_A 256 KAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHhhhhhcc
Confidence 988776665543
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=1.1e-20 Score=204.72 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=190.3
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..+...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|.+..++..+|.
T Consensus 22 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD-YEKAAEAFTKAIEENKEDAIPYINFANLLSS-VNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 46788999999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 181 KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 181 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
..++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888776665443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.1e-20 Score=204.31 Aligned_cols=222 Identities=16% Similarity=0.195 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCCHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN-------AVAFRYLGHYYTRFSIDTQR 76 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~~g~~~e 76 (1173)
...|+..|+++++.+ +++.+++.+|.++...|+ +++|+..|+++++.+|++ +.++..+|.++.. .|++++
T Consensus 21 ~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 97 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK-LGDLKK 97 (258)
T ss_dssp HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-cccHHH
Confidence 345699999999999 999999999999999998 999999999999998877 7999999999999 999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 77 AIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 77 A~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
|+..|+++++.+|. +.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+
T Consensus 98 A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 98 TIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999987 4567788899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc------CCCHHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS------SENVSA 230 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a 230 (1173)
|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+ |++..+
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 887776
Q ss_pred HHHHHH
Q 045024 231 HYGLAS 236 (1173)
Q Consensus 231 ~~~la~ 236 (1173)
+..++.
T Consensus 250 ~~~l~~ 255 (258)
T 3uq3_A 250 DQLYYK 255 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1.4e-19 Score=193.12 Aligned_cols=216 Identities=15% Similarity=0.125 Sum_probs=205.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG 95 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~ 95 (1173)
+.+|+++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~ 79 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQD-YRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEIN 79 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHH
Confidence 3578889999999999999998 9999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 96 EALCELLEHG-GKESLEVVVCREASD--KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 96 ~~La~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
..+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 9999999999 999999999999999 6777889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
.|++++|+..++++++..| .+...+..++.++...|++++|..+++.+.+.+|+++.+...
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999876543
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=5.4e-20 Score=206.50 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=127.0
Q ss_pred HHccCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 045024 33 WENSESKEKAAEHFVIAAKLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLE 111 (1173)
Q Consensus 33 ~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A 111 (1173)
+..|+ |.+|+..+++....+|++ .++...++++|.. .|++++|+..++. .+|.+..++..++..+...|+.++|
T Consensus 10 ~~~g~-y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGS-YQQCINEAQRVKPSSPERDVERDVFLYRAYLA-QRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTC-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-TTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHH-HHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-CCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 34555 677776666655555554 3455666667777 7777776665544 2444455566666666666667777
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 112 VVVCREASDK--SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 112 ~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |+++.++..+|.++...|++++|++.|+++++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7777766654 466666667777777777777777776665 666667777777777777777777777777766
Q ss_pred CCCChHHHHHHH--HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 190 DDTSIFPLLESG--NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 190 ~p~~~~a~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++..+|+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 666543333222 233334667777777777777677666666666666665554
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=8e-20 Score=199.61 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=206.1
Q ss_pred HhCCCC-HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 16 EANPDD-PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 16 ~~~P~~-~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+.+|.+ +.+++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|+++++.+|.+..+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGN-TEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTC-TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHH
Confidence 346665 7899999999999987 9999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASD--KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
+..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
.|++++|+..++++++..|.+..++..++.++...|++++|...++++++..|+++....
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987653
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=3.4e-20 Score=221.85 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCChhHHHHhHHHH-H--HhcCCHHHHHHHHH
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEV----GEKKLARQAFDSARSIDPSLALPWAGMSADV-Q--ASESLVDDAFESCL 477 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~----g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~-~--~~~g~~~eA~~~~~ 477 (1173)
+.|+++.+..|..+..++.+|.+|... +++++|+.+|+++. |+++.+++. ++.+ + ...+++++|+.+|+
T Consensus 200 ~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~-Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 200 KQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS-LAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH-HHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHH
Confidence 344555555555555555555555443 45566666666654 555555555 3333 3 34556666666666
Q ss_pred HHHhcCCchHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 045024 478 RAVQILPLAEFQIGLAKLAKLSG---HLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARY 550 (1173)
Q Consensus 478 ~al~~~p~~~~~~~la~l~~~~g---~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~ 550 (1173)
++.+.+ .+...+.++.++. .| ..+.++|+..|+++. |+++.+++.+|.+|.. ..++++|+.+|+++.+
T Consensus 276 ~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 276 NGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 655443 3445555555444 33 123456666777776 7889999999999987 4499999999999853
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 045024 551 AISSSSGTVPNSHFQDISINLARSLSR----AGNALDAVRECESLERQGMLDAEVLQVYAFSLWQ--LGKYDLALSMARN 624 (1173)
Q Consensus 551 l~~~~pe~~~~~~~~~~~~~La~~~~~----~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~--~g~~~eA~~~~~~ 624 (1173)
++++. +.++||.+|.. ..++++|+..|+++.+.++. .+...++.+... .++.++|....++
T Consensus 351 -----~g~~~------A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 351 -----NGQNS------ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp -----TTCTT------HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----hChHH------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22333 89999999985 46899999999999877654 444445555433 3456777777776
Q ss_pred Hhhh
Q 045024 625 LASS 628 (1173)
Q Consensus 625 aL~~ 628 (1173)
..+.
T Consensus 418 ~~~~ 421 (452)
T 3e4b_A 418 ELAA 421 (452)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6663
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=8.4e-20 Score=189.47 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
++.+|+.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 4 ~~~iy~~lG~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRT-KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
+...++++.|+..+.+++..+|++..++..+|.++...|++++|++.|+++++.+|+++.++..+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhcCCC
Q 045024 216 QFQLALKISSEN 227 (1173)
Q Consensus 216 ~~~~al~~~p~~ 227 (1173)
.|+++++.+|++
T Consensus 163 ~~~~al~~~p~~ 174 (184)
T 3vtx_A 163 YFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHTTHHH
T ss_pred HHHHHHhCCccC
Confidence 555555555543
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=1.1e-19 Score=188.58 Aligned_cols=173 Identities=17% Similarity=0.210 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
+++.+|+.+|.++..+|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..+.+++...|++..++..+|
T Consensus 3 e~~~iy~~lG~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGD-FDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 578899999999999998 9999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 045024 100 ELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAA 179 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 179 (1173)
.++...++++.|...+.+++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCh
Q 045024 180 IKSYGRAIELDDTSI 194 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~ 194 (1173)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.84 E-value=7e-20 Score=214.69 Aligned_cols=307 Identities=14% Similarity=0.101 Sum_probs=252.2
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------C
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------S 88 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~ 88 (1173)
+.....++.+|..++..|+ +++|+..|+++++..|+++ .++..+|.++.. .|++++|+..|+++++. .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcccc
Confidence 4467788999999999998 9999999999999999984 688999999999 99999999999999887 3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC--------------------H
Q 045024 89 PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKK--------------------W 142 (1173)
Q Consensus 89 p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~--------------------~ 142 (1173)
|....++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 4446679999999999999999999999999886643 5589999999999999 9
Q ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCh
Q 045024 143 SEAVQSLQHAIRG------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI------FPLLESGNIFLMLGNF 210 (1173)
Q Consensus 143 ~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~ 210 (1173)
++|+..+++++.. .|....++..+|.++...|++++|+..++++++..+... .++..+|.++...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999999876 334466889999999999999999999999998866543 3889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHh
Q 045024 211 RKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYA 290 (1173)
Q Consensus 211 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 290 (1173)
++|+..|+++++..|.... ....+.++..+|..+...|++++|...++++++..+.... .+....++..+|.++...
T Consensus 244 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~- 320 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTAL- 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCcC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHc-
Confidence 9999999999988765432 2345667777778888888899999999999988776432 122234444555554433
Q ss_pred hccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHh
Q 045024 291 KCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAP------WQANIYTDIAITSDLIYSLNEA 361 (1173)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~la~~~~~~g~~~eA 361 (1173)
+++++|+..|++++++.+ ....++..++.++...|+....
T Consensus 321 -------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 321 -------------------------------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 346789999999988743 3466888999999988877544
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=4.8e-20 Score=220.54 Aligned_cols=381 Identities=14% Similarity=0.055 Sum_probs=252.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT---QRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~---~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
..+|..++..|+ +++|+..|+++.+. .++.+++.+|.+|.. .|++ ++|+.+|+++++. ++.+++.+|.++
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~-~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL--GYSEAQVGLADIQVG-TRDPAQIKQAEATYRAAADT---SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 457888888887 99999999998765 467788899999998 8988 8999999999866 677889999977
Q ss_pred HHCC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Q 045024 103 EHGG-----KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 103 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...| ++++|+..|+++++.. ++.+++.+|.+|...+..+++...++..... .+.++.+++.+|.+|...+.+
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 6666 7889999999998844 4458889999998877655444433333322 234577889999999998865
Q ss_pred HHHHHH----HHHHHHhCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 177 SAAIKS----YGRAIELDDTSIFPLLESGNIFLMLG---NFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 177 ~~A~~~----~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
+++... ++.+.. .++.+++.+|.+|...| ++++|+..|+++.+..|.....++.+|.++.....
T Consensus 158 ~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~------ 228 (452)
T 3e4b_A 158 DQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL------ 228 (452)
T ss_dssp GGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG------
T ss_pred ccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------
Confidence 555444 444433 34458899999999999 89999999999999888887766777766632100
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHH
Q 045024 250 AFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKS 329 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~ 329 (1173)
...+.++|+.
T Consensus 229 ----------------------------------------------------------------------~~~d~~~A~~ 238 (452)
T 3e4b_A 229 ----------------------------------------------------------------------GTPDEKTAQA 238 (452)
T ss_dssp ----------------------------------------------------------------------SSCCHHHHHH
T ss_pred ----------------------------------------------------------------------CCCCHHHHHH
Confidence 0011346777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH---HHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHHH
Q 045024 330 SYQRALYLAPWQANIYTDIAITSD---LIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHA 406 (1173)
Q Consensus 330 ~~~~al~l~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~a 406 (1173)
.|+++. |+++.+++.+|.+|. ..+++ ..+.+.
T Consensus 239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~------------------------------------------~~A~~~ 273 (452)
T 3e4b_A 239 LLEKIA---PGYPASWVSLAQLLYDFPELGDV------------------------------------------EQMMKY 273 (452)
T ss_dssp HHHHHG---GGSTHHHHHHHHHHHHSGGGCCH------------------------------------------HHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHhCCCCCCH------------------------------------------HHHHHH
Confidence 888877 788888888888743 12222 344556
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh----cCCHHHHHHHHH
Q 045024 407 LIRGLQLDVSLADAWAHIGKLYGEVG-----EKKLARQAFDSARSIDPSLALPWAGMSADVQAS----ESLVDDAFESCL 477 (1173)
Q Consensus 407 ~~kal~l~p~~~~a~~~Lg~~y~~~g-----~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~----~g~~~eA~~~~~ 477 (1173)
|+++.+. +++.+++.||.+|. .| ++++|+.+|+++. |.++.++++ ++.+|.. ..++++|+.+|+
T Consensus 274 ~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~-Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 274 LDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYY-LGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHH-HHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHH-HHHHHHCCCCCCcCHHHHHHHHH
Confidence 6676643 47889999999988 55 9999999999988 888888888 5657754 337888888777
Q ss_pred HHHhcCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhh
Q 045024 478 RAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEA----RSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 478 ~al~~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~----~g~~~~A~~~~~kAl~l~~ 553 (1173)
++.+ ++++.+.+.+|.+|.. .+++++|..+|+++.+.
T Consensus 347 ~Aa~-------------------------------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~-- 387 (452)
T 3e4b_A 347 TAAR-------------------------------------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ-- 387 (452)
T ss_dssp HHHT-------------------------------------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT--
T ss_pred HHHh-------------------------------------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC--
Confidence 7654 3456677888888875 46899999999988522
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHc
Q 045024 554 SSSGTVPNSHFQDISINLARSLSRA--GNALDAVRECESLERQ 594 (1173)
Q Consensus 554 ~~pe~~~~~~~~~~~~~La~~~~~~--g~~~eAi~~~~~~~~~ 594 (1173)
....+...++.+.... ++..+|....++..+.
T Consensus 388 ---------g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 388 ---------DTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp ---------CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 1123555666654333 3466676666666543
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=1.8e-19 Score=199.12 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHH
Q 045024 4 KGALLLQLEDSLEAN----PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~----P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
..+|+..|+++++.. |.++.+++.+|.++...|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+.
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~ 98 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHH
Confidence 345799999999973 5678899999999999998 9999999999999999999999999999999 999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++..++..+|.++...|++++|+..++++++..|+++......+.. ...|++++|+..+++++...|.+
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999998766665544 67799999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT----SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
...+. ++.++...++.++|+..++++++..|. +..++..+|.++...|++++|+..|+++++.+|++...+ +
T Consensus 178 ~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~ 253 (275)
T 1xnf_A 178 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---R 253 (275)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---H
T ss_pred hHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---H
Confidence 66654 788888999999999999999887664 368899999999999999999999999999999875433 5
Q ss_pred HHHHHHHH
Q 045024 236 SGLLGLAK 243 (1173)
Q Consensus 236 ~~~~~l~~ 243 (1173)
.++..+++
T Consensus 254 ~~~~~l~~ 261 (275)
T 1xnf_A 254 YALLELSL 261 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.3e-16 Score=201.36 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcc--cH---HHHHHHHHHHhcCC
Q 045024 341 QANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNY--NG---LKQHALIRGLQLDV 415 (1173)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~--~~---~a~~a~~kal~l~p 415 (1173)
+++.+..++..|...|.++++ +..++.++.++|.+...+..+|.++.+ ++ .+.+.|...+.+.|
T Consensus 1279 ~~deLeeli~yYe~~G~feEA-----------I~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEEL-----------ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 344555777777777777777 455678888888888888888877773 33 34456777777766
Q ss_pred -----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------hCCCChhHHHHhHHHHHHhcCCHHHHHHHHHH
Q 045024 416 -----SLADAWAHIGKLYGEVGEKKLARQAFDSARS------------IDPSLALPWAGMSADVQASESLVDDAFESCLR 478 (1173)
Q Consensus 416 -----~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~------------~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~ 478 (1173)
.++..|..+..+|.+-|+++.|+...-.... ..+.+++.++. .+..|. +...+++..+..
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyk-ai~Fyl--~~~P~~lndLl~ 1424 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR-AIQFYL--EFKPLLLNDLLM 1424 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHH-HHHHHH--hhChHHHHHHHH
Confidence 6788899999999999999999843332221 15667777776 554554 444555555555
Q ss_pred HH
Q 045024 479 AV 480 (1173)
Q Consensus 479 al 480 (1173)
++
T Consensus 1425 ~l 1426 (1630)
T 1xi4_A 1425 VL 1426 (1630)
T ss_pred Hh
Confidence 55
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.83 E-value=1e-19 Score=219.05 Aligned_cols=214 Identities=16% Similarity=0.110 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDT-QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCRE 117 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~-~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~ 117 (1173)
+++++..+++.....|.++.+++.+|.++.. .|++ ++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788888888888888888888888888888 8888 8888888888888888888888888888888888888888888
Q ss_pred HHhhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHH---------KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL--------GMFSAAI 180 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~ 180 (1173)
+++.+|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8888888 68888888888888 8888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHHhCC---CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 181 KSYGRAIELDD---TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 181 ~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
..|+++++++| +++.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.++..+|+...+...+.+.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888888888 888888888888888888888888888888888888888888888888888877776655443
No 48
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.4e-16 Score=200.98 Aligned_cols=489 Identities=14% Similarity=0.075 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ----NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
|+---.....|...|. +.+|++.|++++ +.|+ +...-..++.+..+ . +..+..++..+.-..+ ...
T Consensus 985 PeeVs~~vKaf~~agl-p~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIk-a-D~~Rv~eyI~kLd~~d------~~e 1054 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADL-PNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIK-A-DRTRVMEYINRLDNYD------APD 1054 (1630)
T ss_pred HHHhHHHHHHHHhCCC-HHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHH-h-ChhhHHHHHHHhhhcc------HHH
Confidence 3333445566666666 888888888888 3343 33444445555555 3 3444444444422111 234
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045024 98 LCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFS 177 (1173)
Q Consensus 98 La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 177 (1173)
+|.++...|.+++|..+|+++- ....+ +...+...|++++|++.++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 7888899999999999999863 11111 233344788889998888865 56889999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 045024 178 AAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASL 257 (1173)
Q Consensus 178 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~ 257 (1173)
+|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+...+|.+|.++++ ++
T Consensus 1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~r-------le----- 1184 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNR-------LA----- 1184 (1630)
T ss_pred HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcC-------HH-----
Confidence 999999775 778888999999999999999999999988877542 223346777776655 22
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhc
Q 045024 258 LEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYL 337 (1173)
Q Consensus 258 l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 337 (1173)
+ ++.+.. .++. ..+...|+.+... +.+++|+..|.++
T Consensus 1185 --e-le~fI~----~~n~-ad~~~iGd~le~e--------------------------------g~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1185 --E-LEEFIN----GPNN-AHIQQVGDRCYDE--------------------------------KMYDAAKLLYNNV--- 1221 (1630)
T ss_pred --H-HHHHHh----CCCH-HHHHHHHHHHHhc--------------------------------CCHHHHHHHHHhh---
Confidence 1 111110 1122 2233455554433 3477899999885
Q ss_pred CCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccH---HHHHHHHHHHhcC
Q 045024 338 APWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNG---LKQHALIRGLQLD 414 (1173)
Q Consensus 338 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~---~a~~a~~kal~l~ 414 (1173)
..|..++.++.++|++++|. +.+.++ .+..+|...+.+..+.+ .|+.+... +.
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AI-----------EaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-- 1277 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAV-----------DGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-- 1277 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHH-----------HHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh--
Confidence 47889999999999988883 334444 56688888887776544 34444332 22
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH--hcCCHHHHHHHHHHHHhcCC------ch
Q 045024 415 VSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA--SESLVDDAFESCLRAVQILP------LA 486 (1173)
Q Consensus 415 p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~--~~g~~~eA~~~~~~al~~~p------~~ 486 (1173)
.+++.+..++..|...|.+++|+..|++++.++|.+...+.. ++.++. +-++..++++.|...+.+.| ..
T Consensus 1278 -v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE-LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1278 -VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE-LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred -cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH-HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 356667799999999999999999999999999998888866 444554 56778888888888888766 23
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcC---------------CHH
Q 045024 487 EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQR------------GPHYPESHNLYGLVCEARS---------------DYQ 539 (1173)
Q Consensus 487 ~~~~~la~l~~~~g~~~~~~A~~~l~~al~~------------~P~~~~a~~~lg~i~~~~g---------------~~~ 539 (1173)
..+..+..++...+++ +.|...+-..... .+.+++.++.....|...+ +++
T Consensus 1356 ~lW~elv~LY~~~~e~--dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~ 1433 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEY--DNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 1433 (1630)
T ss_pred HHHHHHHHHHHhcccH--HHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChH
Confidence 4455566666666663 4555333222211 5678888888888888777 777
Q ss_pred HHHHHHHHHH------HHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHH---HHHHHHHHHH----HcCCCCHHH--HHH
Q 045024 540 AAVVSYRLAR------YAISSSSGTVPNSHFQDISINLARSLSRAGNAL---DAVRECESLE----RQGMLDAEV--LQV 604 (1173)
Q Consensus 540 ~A~~~~~kAl------~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~---eAi~~~~~~~----~~~p~~~~~--~~~ 604 (1173)
.++..|++.- ..+.... ..+...+--.+..++....+++ ..++.|...- ....+..+. +..
T Consensus 1434 R~V~l~~~~~~l~lik~yl~~vq----~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frr 1509 (1630)
T 1xi4_A 1434 RAVNYFSKVKQLPLVKPYLRSVQ----NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRR 1509 (1630)
T ss_pred HHHHHHHHcCChHHhHHHHHHHH----HhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHH
Confidence 7777777331 1111000 1112224445666666666653 2232222210 000111111 133
Q ss_pred HH-HHHHHcCChHHHHHHHHHH
Q 045024 605 YA-FSLWQLGKYDLALSMARNL 625 (1173)
Q Consensus 605 la-~a~~~~g~~~eA~~~~~~a 625 (1173)
+| .+|-+.|+|..|++.+++.
T Consensus 1510 IAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1510 IAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred HHHHHHHhcCcHHHHHHHHHhc
Confidence 44 4455559999999988864
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=3.1e-19 Score=210.27 Aligned_cols=285 Identities=17% Similarity=0.126 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------CC
Q 045024 20 DDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------SP 89 (1173)
Q Consensus 20 ~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~p 89 (1173)
.....++.+|..++..|+ +++|+..|+++++.+|+++ .++..+|.++.. .|++++|+..|+++++. .|
T Consensus 46 ~~~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGD-CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCch
Confidence 345667889999999997 9999999999999999987 589999999999 99999999999999987 46
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHcCC-----------------HHHHH
Q 045024 90 DDSVSGEALCELLEHGGKESLEVVVCREASDK------SPRAFWAFRRLGYLQLHHKK-----------------WSEAV 146 (1173)
Q Consensus 90 ~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~-----------------~~~A~ 146 (1173)
....++..+|.++...|++++|+..++++++. .|....++..+|.++...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 66778999999999999999999999999888 45567899999999999999 99999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCChHHHH
Q 045024 147 QSLQHAIRGY------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI------FPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 147 ~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~~~g~~~~A~ 214 (1173)
..+++++.+. +....++..+|.++...|++++|+..++++++..+... .++..+|.++...|++++|+
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999998763 23456889999999999999999999999999876533 38899999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccc
Q 045024 215 EQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFP 294 (1173)
Q Consensus 215 ~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 294 (1173)
..|++++...+.... ....+.++..+|..+...|++++|...+++++...+.... ......++..++.++...
T Consensus 284 ~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~----- 356 (411)
T 4a1s_A 284 EHYKRTLALAVELGE-REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAI----- 356 (411)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHh-----
Confidence 999999998775422 2244666777777888888899999999999998776532 122333444445444333
Q ss_pred hhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 295 WAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++++|+..|++++++.+.
T Consensus 357 ---------------------------g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 357 ---------------------------GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHCCH
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHhh
Confidence 4477899999999998764
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.5e-18 Score=196.67 Aligned_cols=223 Identities=11% Similarity=0.082 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDLGLHLWE-------NSESK-------EKAAEHFVIAAK-LNPQNAVAFRYLGHYYTR 69 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~lg~~~~~-------~~~~~-------~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~ 69 (1173)
..|+..|+++++.+|+++.+|+.+|..+.. .|+ + ++|+..|+++++ .+|++..+|..+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD-MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccc-hhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 457899999999999999999999999874 354 5 899999999999 799999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-cCCHHHHHH
Q 045024 70 FSIDTQRAIKCYQRAVSLSPDDSV-SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH-HKKWSEAVQ 147 (1173)
Q Consensus 70 ~~g~~~eA~~~~~~al~~~p~~~~-a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~A~~ 147 (1173)
.|++++|...|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+..... .|++++|+.
T Consensus 112 -~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 -RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp -TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999987 899999999999999999999999999999988888766666544 799999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---DDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
.|+++++.+|+++.+|..+|.++...|++++|+..|++++.. .|+ ....|..++..+...|++++|...++++++.
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996 553 6789999999999999999999999999999
Q ss_pred cCCCHH
Q 045024 224 SSENVS 229 (1173)
Q Consensus 224 ~p~~~~ 229 (1173)
.|++..
T Consensus 271 ~p~~~~ 276 (308)
T 2ond_A 271 FREEYE 276 (308)
T ss_dssp TTTTTS
T ss_pred cccccc
Confidence 998664
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.8e-19 Score=209.56 Aligned_cols=283 Identities=19% Similarity=0.174 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCH
Q 045024 5 GALLLQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~ 74 (1173)
.+|+..|+++++..|+++ .++..+|.+++..|+ +++|+..|++++.. .|..+.++..+|.++.. .|++
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~ 103 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LGNF 103 (406)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-cCCH
Confidence 446999999999999984 688999999999987 99999999999876 34457789999999999 9999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhh------C
Q 045024 75 QRAIKCYQRAVSLSPDD------SVSGEALCELLEHGGK--------------------ESLEVVVCREASDK------S 122 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~------~~a~~~La~~~~~~g~--------------------~~~A~~~~~~al~~------~ 122 (1173)
++|+..++++++..|.. ..++..+|.++...|+ +++|+..+++++.. .
T Consensus 104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999886643 3479999999999999 99999999999876 3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--- 193 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 193 (1173)
|....++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|++++|+..++++++..|..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 3446789999999999999999999999999876543 3388999999999999999999999999887654
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 194 ---IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 194 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
..++..+|.++...|++++|+..|+++++..+.... ....+.++..+|..+...|++++|...++++++..+....
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999999998665432 2344566777777888888899999999999998876532
Q ss_pred hcCChHHHHHHhchHHHHHhh
Q 045024 271 LAGNMSCIWKLHGDIQLTYAK 291 (1173)
Q Consensus 271 ~~~~~~~~~~~~g~~~~~~~~ 291 (1173)
.+....++..++.++...++
T Consensus 343 -~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 343 -KSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT
T ss_pred -CcchhHHHHHHHHHHHHhhH
Confidence 23445666677777766654
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=4.7e-19 Score=213.28 Aligned_cols=212 Identities=19% Similarity=0.157 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESK-EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
.++..+++.....|.++.+++.+|.++...++ + ++|+..|+++++.+|+++.+++.+|.+|.. .|++++|+.+|+++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a 163 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPD-YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 35778888888899999999999999999987 9 999999999999999999999999999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------CCHHHHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHG---------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHH--------KKWSEAVQ 147 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------g~~~~A~~ 147 (1173)
++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.++..+|.++... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 79999999999999 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 148 SLQHAIRGYP---TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 148 ~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
.|+++++++| +++.++..+|.+|...|++++|+..|+++++++|++..++..++.++..+|++++|+..+.+.
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999877654
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=1.1e-18 Score=189.11 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
.|+..|+++++.+|+++.+++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|++++
T Consensus 41 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 41 KAAEAFTKAIEENKEDAIPYINFANLLSSVNE-LERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFEKAL 118 (243)
T ss_dssp -CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 45889999999999999999999999999987 9999999999999999999999999999999 999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 045024 86 SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEA 165 (1173)
Q Consensus 86 ~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 165 (1173)
+.+|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (243)
T 2q7f_A 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198 (243)
T ss_dssp HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|.++...|++++|+..++++++.+|++..++..++.+....|
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999988887765544
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=4e-18 Score=183.51 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP-QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
.|.++..++.+|.+++..|+ +++|+..|+++++.+| .+..+++.+|.++.. .|++++|+..|+++++.+|++..++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~ 80 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFDIAIKKNYNLANAYI 80 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCcchHHHHH
Confidence 45678999999999999998 9999999999999999 899999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAF-------WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--SPHLWEALG 167 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la 167 (1173)
.+|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999999998 66999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.+|...| ...++++..+.+.+...+ .+......+.+++|+..|+++++++|+++.+...++.+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 9997665 445677777776664443 44556667889999999999999999999877666554
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=1.2e-18 Score=197.74 Aligned_cols=283 Identities=15% Similarity=0.124 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCCHHHHHHHHHHHHhh------CCCC
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSL------SPDD 91 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~------~p~~ 91 (1173)
...++..|..++..|+ +++|+..|+++++.+|+++ .++..+|.++.. .|++++|+..++++++. .|..
T Consensus 5 ~~~l~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGD-CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4567888999999988 9999999999999999984 688899999999 99999999999999887 3445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC--------------------HHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKK--------------------WSEA 145 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~--------------------~~~A 145 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 6679999999999999999999999998875532 4588999999999999 9999
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHH
Q 045024 146 VQSLQHAIRGY------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 146 ~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A 213 (1173)
+..+++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998762 3345688999999999999999999999999876543 33889999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhcc
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCF 293 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (1173)
+..++++++..+.... ....+.++..+|..+...|++++|...+++++...+.... ......++..++.++...
T Consensus 243 ~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~---- 316 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTAL---- 316 (338)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHc----
Confidence 9999999988765432 2244566777777788888899999999999988776533 222334444555555443
Q ss_pred chhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHHHHHHHHHHhcCCC
Q 045024 294 PWAEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPW 340 (1173)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 340 (1173)
+++++|...|++++++.+.
T Consensus 317 ----------------------------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 317 ----------------------------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHC---
T ss_pred ----------------------------CChHHHHHHHHHHHHHHHh
Confidence 3477899999999988764
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=1.6e-18 Score=191.45 Aligned_cols=189 Identities=14% Similarity=0.014 Sum_probs=168.4
Q ss_pred HccCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 045024 34 ENSESKEKAAEHFVIAAKLN----PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES 109 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~ 109 (1173)
..++ +++|+..|+++++.. |.++.+++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 17 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQ-QEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccch-HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3455 999999999999873 4567899999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.......+.. ...|++++|+..+++++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999998766666544 6679999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 190 DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 190 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
.|.+...+ .++.++...++.++|+..+++++...|.
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 98876664 4777888889999999999998877654
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=6.2e-18 Score=180.33 Aligned_cols=204 Identities=13% Similarity=0.044 Sum_probs=186.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..|++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMR-GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 467889999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 132 LGYLQLHH-KKWSEAVQSLQHAIR--GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 132 la~~~~~~-g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 99999999 999999999999999 667778999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 209 NFRKGVEQFQLALKISS-ENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
++++|+..++++++..| +++..+..++.++...|+ .+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN-------AQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHH
Confidence 99999999999999999 888887666666655544 5555544444433
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2e-18 Score=195.54 Aligned_cols=221 Identities=11% Similarity=-0.025 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHC
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRF------SIDT-------QRAIKCYQRAVS-LSPDDSVSGEALCELLEHG 105 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~------~g~~-------~eA~~~~~~al~-~~p~~~~a~~~La~~~~~~ 105 (1173)
++|+..|++++..+|.++.+|+.+|..+... .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 7899999999999999999999999998740 4885 999999999999 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 045024 106 GKESLEVVVCREASDKSPRAFW-AFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR-LGMFSAAIKSY 183 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~ 183 (1173)
|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999886 999999999999999999999999999999998888877766544 79999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---cCC-CHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 045024 184 GRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI---SSE-NVSAHYGLASGLLGLAKQCINLGAFRWGASLLE 259 (1173)
Q Consensus 184 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~ 259 (1173)
+++++.+|+++.++..+|.++...|++++|+..|++++.. .|+ ....+..++..+.. .|+++.+...++
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~-------~g~~~~a~~~~~ 265 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN-------IGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH-------HSCHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 453 56666666665554 455777777777
Q ss_pred HHHHHHHH
Q 045024 260 DACKVAEA 267 (1173)
Q Consensus 260 ~Al~~~~~ 267 (1173)
++++..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 77766654
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=4.5e-18 Score=185.64 Aligned_cols=207 Identities=17% Similarity=0.164 Sum_probs=190.0
Q ss_pred HhCCCC-HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 045024 51 KLNPQN-AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAF 129 (1173)
Q Consensus 51 ~~~p~~-~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 129 (1173)
+.+|.+ +.+++.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 345665 7899999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIR--GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999 88889999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 045024 208 GNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVA 265 (1173)
Q Consensus 208 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~ 265 (1173)
|++++|+..|+++++..|++...+..++.++...|+ +++|...++++++..
T Consensus 189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED-------RDTAASYGLQLKRLY 239 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHC
Confidence 999999999999999999999888777777766554 666666666655543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=5.1e-19 Score=208.39 Aligned_cols=261 Identities=19% Similarity=0.162 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCH
Q 045024 5 GALLLQLEDSLEANPDDP----SLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDT 74 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~ 74 (1173)
..|+..|+++++.+|+++ .+++.+|.++...|+ +++|+..|+++++. .|....++..+|.++.. .|++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 142 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV-MGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-CCCH
Confidence 446999999999999987 589999999999998 99999999999987 56678899999999999 9999
Q ss_pred HHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhhC------CCc
Q 045024 75 QRAIKCYQRAVSL------SPDDSVSGEALCELLEHGGK-----------------ESLEVVVCREASDKS------PRA 125 (1173)
Q Consensus 75 ~eA~~~~~~al~~------~p~~~~a~~~La~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~ 125 (1173)
++|+..|+++++. .|....++..+|.++...|+ +++|+..++++++.. +..
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999988 45566789999999999999 999999999998763 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------ 193 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 193 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.+|...|++++|+..|+++++..+..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5689999999999999999999999999987643 2388999999999999999999999999987643
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
..++..+|.++...|++++|+.+|+++++..+.... ....+.++..++..+...|++++|...++++++..+..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 678899999999999999999999999987654321 23445667777777888888999999999988876554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=8.2e-19 Score=198.98 Aligned_cols=261 Identities=20% Similarity=0.198 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCC
Q 045024 4 KGALLLQLEDSLEANPDD----PSLHLDLGLHLWENSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSID 73 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~----~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~ 73 (1173)
...|+..|+++++.+|++ ..++..+|.++...|+ +++|+..+++++.. .|..+.++..+|.++.. .|+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 98 (338)
T 3ro2_A 21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LGN 98 (338)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-ccC
Confidence 345699999999999998 4688899999999987 99999999999876 44557789999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhh------
Q 045024 74 TQRAIKCYQRAVSLSPDD------SVSGEALCELLEHGGK--------------------ESLEVVVCREASDK------ 121 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~p~~------~~a~~~La~~~~~~g~--------------------~~~A~~~~~~al~~------ 121 (1173)
+++|+..++++++..|.. ..++..+|.++...|+ +++|+..+++++..
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~ 178 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999876543 3378999999999999 99999999998776
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-- 193 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 193 (1173)
.+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..++++++..+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 23346688999999999999999999999999875532 3488999999999999999999999999886654
Q ss_pred ----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 194 ----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 194 ----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
..++..+|.++...|++++|+..++++++..+.... ....+.++..++..+...|++++|...++++++..+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 678889999999999999999999999987654322 2344566777777788888899999999998887654
No 62
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2e-18 Score=215.88 Aligned_cols=174 Identities=18% Similarity=0.220 Sum_probs=142.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|++++++..+|.++.. +|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 4 s~P~~a~al~nLG~~~~~-~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357777888888888888 8888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 211 (1173)
+|.++..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..++.++|.++..+|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhcCC
Q 045024 212 KGVEQFQLALKISSE 226 (1173)
Q Consensus 212 ~A~~~~~~al~~~p~ 226 (1173)
+|.+.|++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 888888888776543
No 63
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=7.8e-17 Score=178.62 Aligned_cols=231 Identities=17% Similarity=0.206 Sum_probs=201.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTR---FSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+|+++.+++.+|.++...++ +++|+.+|+++++ |+++.+++.+|.++.. ..+++++|+.+|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 68899999999999999987 9999999999998 8889999999999885 2589999999999999885 8899
Q ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 045024 95 GEALCELLEH----GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEAL 166 (1173)
Q Consensus 95 ~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~l 166 (1173)
+..+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+..|+++++.+ ++.++..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 9999999999 99999999999999987 488999999999999 999999999999999976 68899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 045024 167 GLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGL 238 (1173)
Q Consensus 167 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 238 (1173)
|.+|.. .+++++|+..|+++++. +++.+++.+|.+|.. .+++++|+..|+++++..| +.+++.++.++
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 999999 99999999999999987 468899999999999 9999999999999999865 66777777766
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q 045024 239 LGLAKQCINLGAFRWGASLLEDACKV 264 (1173)
Q Consensus 239 ~~l~~~~~a~g~~~~A~~~l~~Al~~ 264 (1173)
..- ....+++++|..++++|++.
T Consensus 229 ~~g---~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNG---EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTT---SSSSCCSTTHHHHHHHHHHH
T ss_pred HcC---CCcccCHHHHHHHHHHHHHc
Confidence 640 00145577777777777664
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=2.8e-18 Score=214.59 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=168.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
..|++++++.++|.++..+|+ +++|+..|+++++++|+++.+++.+|.+|.. .|++++|+..|+++++++|++..++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 479999999999999999998 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++..+|++++|++.|+++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++.++|.++...|++
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 045024 177 SAAIKSYGRAIELDDT 192 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~ 192 (1173)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999987654
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=1.3e-16 Score=176.88 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=160.6
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
+|.++.+++.+|.++.. .|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.. ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYK-EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 57889999999999999 9999999999999998 7889999999999999 999999999999999875 7899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 129 FRRLGYLQLH----HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 129 ~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
+..+|.++.. .+++++|+..|+++++. +++.++..+|.+|.. .|++++|+..|+++++.+ ++.++..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 9999999999 99999999999999987 489999999999999 999999999999999975 68899999
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 045024 201 GNIFLM----LGNFRKGVEQFQLALKISSENVSAHYGLASGLLG 240 (1173)
Q Consensus 201 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 240 (1173)
|.+|.. .+++++|+..|+++++. +++.+++.+|.++..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 999999 99999999999999987 356666666666655
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=1.2e-16 Score=171.97 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP-DDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p-~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+.++..++.+|.++.. .|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 4 ~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN-AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4456777777777777 7777777777777777776 6666666677777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSP-------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLESGNI 203 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~ 203 (1173)
|.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777777777777766 44555555555555566666666555555555 55555555555
Q ss_pred HHHc
Q 045024 204 FLML 207 (1173)
Q Consensus 204 ~~~~ 207 (1173)
+...
T Consensus 163 ~~~~ 166 (228)
T 4i17_A 163 FYNN 166 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.77 E-value=9.6e-15 Score=180.48 Aligned_cols=189 Identities=9% Similarity=-0.075 Sum_probs=150.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CCC-----------ChhHHHHhHHHH
Q 045024 405 HALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSI-----------DPS-----------LALPWAGMSADV 462 (1173)
Q Consensus 405 ~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~-----------~P~-----------~~~a~~~l~a~~ 462 (1173)
..|++++...|.+...|..++.+....|+++.|...|++++.. .|. ....|+. .+..
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~-y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV-YMNT 443 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH-HHHH
Confidence 6788888889999999999999999999999999999999875 253 2346777 4556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 463 QASESLVDDAFESCLRAVQILP--LAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA 540 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p--~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~ 540 (1173)
..+.|+.+.|..+|.++++..| ....+...+.+....+. +.+.|...|+.+++..|+++..+...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence 6678899999999999998723 34566666666555432 25789999999999999999999889998889999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q 045024 541 AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAEV 601 (1173)
Q Consensus 541 A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~~~ 601 (1173)
|..+|++++. ..|+ ......++......-...|+.+.+.++.+++.+..|+++..
T Consensus 523 AR~lferal~---~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 523 VKSLFESSID---KISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHTT---TSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHH---hcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999853 3221 12345678888888888999999999999999999987543
No 68
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.75 E-value=1.3e-16 Score=178.28 Aligned_cols=233 Identities=14% Similarity=0.053 Sum_probs=213.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcc---CCH
Q 045024 3 EKGALLLQLEDSLEANPDDPSLHLDLGLHLWENS-ESKEKAAEHFVIAAKLNPQNAVAFRYLGHYY----TRFS---IDT 74 (1173)
Q Consensus 3 ~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~----~~~~---g~~ 74 (1173)
+...|+..+.++|.++|++..+|+.+|.++...+ .++++++..+++++..+|++..+|..++.++ .. . +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCCH
Confidence 4455799999999999999999999999999888 3599999999999999999999999999999 77 6 789
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC------HHHHH
Q 045024 75 QRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKES--LEVVVCREASDKSPRAFWAFRRLGYLQLHHKK------WSEAV 146 (1173)
Q Consensus 75 ~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~------~~~A~ 146 (1173)
++++..++++++.+|++..+|...+.+....|.++ ++++.++++++.+|.+..+|...+.+....++ +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999887 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA-AIKSYGRAIELD---DTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
+.+++++..+|.+..+|..++.++...|+..+ ....++++++.+ |.++.++..++.++.+.|+.++|++.|+.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999998655 445677777666 78899999999999999999999999999997
Q ss_pred -hcCCCHHHHHHHHH
Q 045024 223 -ISSENVSAHYGLAS 236 (1173)
Q Consensus 223 -~~p~~~~a~~~la~ 236 (1173)
.+|-....|...+.
T Consensus 287 ~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 287 KYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTCGGGHHHHHHHHH
T ss_pred ccChHHHHHHHHHHh
Confidence 79988887765543
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=2.9e-17 Score=180.94 Aligned_cols=211 Identities=14% Similarity=0.116 Sum_probs=154.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 15 LEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 15 l~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
...+|+++..++.+|..++..|+ +++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGK-YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCC
Confidence 45678888888888888888887 888888888888888888 7888888888888 888888888888888887754
Q ss_pred ---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 92 ---SVSGEALCELLEH--------GGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 92 ---~~a~~~La~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
+.+++.+|.++.. .|++++|+..|+++++..|+++.+...+..+....++ ..
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~ 148 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LA 148 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HH
Confidence 4568888888888 8888888888888888888775554333222111111 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhcCCC
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---SIFPLLESGNIFLML----------GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~ 227 (1173)
..++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 23577788888888888888888888888777 346777888888766 77788888888888888877
Q ss_pred HH---HHHHHHHHHHHHHHH
Q 045024 228 VS---AHYGLASGLLGLAKQ 244 (1173)
Q Consensus 228 ~~---a~~~la~~~~~l~~~ 244 (1173)
+. +...++.++..+++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 43 445556666665554
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.74 E-value=1.1e-16 Score=176.15 Aligned_cols=189 Identities=8% Similarity=0.006 Sum_probs=151.5
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPR--- 124 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~--- 124 (1173)
..+|.++..++.+|..+.. .|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++..|+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYN-QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp --CCSSHHHHHHHHHHHHH-TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 4577888888888888888 888888888888888888888 778888888888888888888888888888774
Q ss_pred cHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 125 AFWAFRRLGYLQLH--------HKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 125 ~~~a~~~la~~~~~--------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
.+.+++.+|.++.. .|++++|+..|+++++.+|+++.+...+..+....++ ....
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~ 150 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHH
Confidence 36778888888888 8888888888888888888776555444333222111 1233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHH----------HHHHHHhhcHHHHHHH
Q 045024 197 LLESGNIFLMLGNFRKGVEQFQLALKISSEN---VSAHYGLASGLLGL----------AKQCINLGAFRWGASL 257 (1173)
Q Consensus 197 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~l----------~~~~~a~g~~~~A~~~ 257 (1173)
++.+|.+|...|++++|+..|+++++..|++ +.+++.+|.++..+ |+...+...+.+++..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999984 56899999999987 7778888888887765
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=188.22 Aligned_cols=241 Identities=17% Similarity=0.120 Sum_probs=188.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL- 87 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~- 87 (1173)
.+|..+.++..+|.++...|+ +++|+..|+++++. .|..+.++..+|.++.. .|++++|+..|+++++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 356678899999999999998 99999999999984 66778899999999999 99999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 88 -------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 88 -------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556779999999999999999999999998874 556788999999999999999999999999
Q ss_pred HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CC------hHHHHHHHHHHHHcCC
Q 045024 153 IRG--------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD---------TS------IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 153 l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------~~------~~a~~~la~~~~~~g~ 209 (1173)
+.. .|....++..+|.++...|++++|+..++++++..| .. ...+...+..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 998 666778899999999999999999999999997532 22 2333444555666677
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
+.+|...++++....|....++..+|.++... |++++|...++++++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ-------GKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHhh
Confidence 78888888888887777666666666666554 557778777777776543
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=4.7e-17 Score=204.61 Aligned_cols=189 Identities=11% Similarity=-0.143 Sum_probs=173.2
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAA--------KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
..+|+++.+++..| ...++ +++|+..|++++ +.+|+++.+++.+|.++.. .|++++|+..|+++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~-~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~ 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQ-PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAER 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCC-HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccC-HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhcc
Confidence 35788888888777 45666 999999999999 8999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++++|+++.+++++|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF 210 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 210 (1173)
.++...|++++|+..|+++++++|++..+++.+|.++...|+.
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999887663
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.72 E-value=7.8e-17 Score=202.67 Aligned_cols=207 Identities=13% Similarity=0.025 Sum_probs=184.3
Q ss_pred HhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 045024 51 KLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV--------SLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKS 122 (1173)
Q Consensus 51 ~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al--------~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 122 (1173)
..+|+++.+++..| .. .|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+
T Consensus 388 ~~~p~~~~a~~~~a---~~-~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TV-LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TT-TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---cc-ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 35788888888777 67 899999999999999 9999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 123 PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
|++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++..+++++|.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHH-HHHHHHHHHHHHHHh
Q 045024 203 IFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWG-ASLLEDACKVAEANT 269 (1173)
Q Consensus 203 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A-~~~l~~Al~~~~~~~ 269 (1173)
++..+|++++|+..|+++++.+|++..+++.++.++...+. .+++ ...+++|.+.+....
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS-------TSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--------------CCHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC-------CCCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999998866443 1222 233555555555443
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.71 E-value=3.5e-16 Score=160.80 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
...+..+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAK-AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556666777777 777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcCCCHH
Q 045024 217 FQLALKISSENVS 229 (1173)
Q Consensus 217 ~~~al~~~p~~~~ 229 (1173)
++++++.+|++..
T Consensus 167 ~~~~~~~~~~~~~ 179 (186)
T 3as5_A 167 FKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHCCCG
T ss_pred HHHHHHcCCCchh
Confidence 7777777666543
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=2.3e-13 Score=168.17 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=177.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHh
Q 045024 403 KQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLAR-QAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQ 481 (1173)
Q Consensus 403 a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~-~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~ 481 (1173)
....|++++...|..+++|+..+..+...|+.++|. ..|++++...|.+...|+. .+......|++++|.++|++++.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~-~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFS-LSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999997 9999999999999888888 66688899999999999999886
Q ss_pred cCCchHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 482 ILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGP-----------HYPESHNLYGLVCEARSDYQAAVVSYRLARY 550 (1173)
Q Consensus 482 ~~p~~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P-----------~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~ 550 (1173)
..|. .++......| +...+|...+.+..+.|+.+.|+.+|.+|++
T Consensus 407 ~l~~------------------------~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 407 RIHL------------------------DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHH------------------------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHH------------------------HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4210 0000001112 2345677777777788888888888888864
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhc
Q 045024 551 AISSSSGTVPNSHFQDISINLARSLSRAGN-ALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSMARNLASSV 629 (1173)
Q Consensus 551 l~~~~pe~~~~~~~~~~~~~La~~~~~~g~-~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~ 629 (1173)
.. |.. ...++...|.+....|+ ++.|..+|+.+++..|.++..+..++......|+.+.|...|+++++..
T Consensus 463 ~~---~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 463 LK---KLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TG---GGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hc---CCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 31 110 01255666666666544 7888888888888888888877777887778888888888888888866
Q ss_pred cccccchhhhhHHHHHHHHHHhcChhhhhHHhhhCCCCccccchhHHHHHHhhh
Q 045024 630 SAMEQSSAAASVSFICRLLYHISGLDSTINSILKMPKGLFQCSKMSFIVSAIHA 683 (1173)
Q Consensus 630 p~~~~~~~~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~~~~~~~~~~l~~l~~ 683 (1173)
|. ......+.......-...|..+.+..+..+.......+.++.........
T Consensus 535 ~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 535 SD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp SS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTCB
T ss_pred CC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhcC
Confidence 53 22445677777888888888888775555544444334466655544433
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=1.8e-16 Score=185.15 Aligned_cols=236 Identities=8% Similarity=-0.052 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHccCCHHHHH-----------HHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP---QNAVAFRYL----GHYYTRFSIDTQRAI-----------KCYQR 83 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~l----g~~~~~~~g~~~eA~-----------~~~~~ 83 (1173)
....+.-.......++ +++|...++++.+.-+ .+....... .+.... .++++.+. ..+++
T Consensus 12 v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~-~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM-LEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HhhcCcccccccccccchhhHHHH
Confidence 3444444555666776 9999999998864322 344443222 222223 44455555 55555
Q ss_pred HHhhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045024 84 AVSLSPDDSVS------GEALCELLEHGGKESLEVVVCREASDK---SPR---AFWAFRRLGYLQLHHKKWSEAVQSLQH 151 (1173)
Q Consensus 84 al~~~p~~~~a------~~~La~~~~~~g~~~~A~~~~~~al~~---~p~---~~~a~~~la~~~~~~g~~~~A~~~l~~ 151 (1173)
+-. .|..... ++.+|..+...|++++|+..++++++. .++ .+.++..+|.++...|++++|+..+++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 3333332 445899999999999999999999887 233 468899999999999999999999999
Q ss_pred HHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 152 AIRGYPT-------SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 152 al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.+. ...++..+|.+|...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+.+|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9987443 24588999999999999999999999999875543 2588899999999999999999999
Q ss_pred HHHhh-----c-CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 219 LALKI-----S-SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 219 ~al~~-----~-p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
++++. + |....+ +..+|..+...|++++|...++++++..+.
T Consensus 249 ~al~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQA-------YFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHTTCGGGHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99984 3 333334 444455555566688888888777776543
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=182.38 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=134.8
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK-- 121 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~-- 121 (1173)
.+|..+.++..+|.++.. .|++++|+..|++++++ .|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYAS-QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356667889999999999 99999999999999985 5566677888888998999999999988888876
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 122 ------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY--------PTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 122 ------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456778888888888888888888888887763 4455667777888888888888888888877
Q ss_pred Hh--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 188 EL--------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 188 ~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
+. .|....++..+|.++...|++++|+..|+++++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 76 44456667777777777777777777777776643
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=2.5e-15 Score=167.73 Aligned_cols=238 Identities=9% Similarity=-0.044 Sum_probs=209.3
Q ss_pred HHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 045024 31 HLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI--DTQRAIKCYQRAVSLSPDDSVSGEALCELL----EH 104 (1173)
Q Consensus 31 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g--~~~eA~~~~~~al~~~p~~~~a~~~La~~~----~~ 104 (1173)
.....++..++|+..+.+++.++|++..+|+.+|.++.. .| ++++++..+++++..+|++..+|...+.++ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKN-LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 344566645899999999999999999999999999999 99 999999999999999999999999999999 77
Q ss_pred C---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----
Q 045024 105 G---GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS--EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM---- 175 (1173)
Q Consensus 105 ~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~--~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~---- 175 (1173)
. +++++++..++++++.+|++..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.+....|+
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 7 78999999999999999999999999999999999999 99999999999999999999999999999988
Q ss_pred --HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 176 --FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK-GVEQFQLALKIS---SENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 176 --~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
++++++.+++++..+|++..+|..++.++...|+..+ ....++++++.+ |.++.++..++.++.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~------ 273 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK------ 273 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC------
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC------
Confidence 9999999999999999999999999999999999665 445777777766 8888888888888876554
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-hcCChHHHHHHhc
Q 045024 250 AFRWGASLLEDACKVAEANTR-LAGNMSCIWKLHG 283 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~~-~~~~~~~~~~~~g 283 (1173)
. ++|++.+..... .+|.....|...+
T Consensus 274 -~-------~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 274 -Y-------NESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp -H-------HHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -H-------HHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4 455555555554 5666666666544
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.70 E-value=4.6e-16 Score=159.93 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
....++.+|.++...|+ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..++++++.+|.+..++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGR-YSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46778899999999987 9999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI 180 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 180 (1173)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChH
Q 045024 181 KSYGRAIELDDTSIF 195 (1173)
Q Consensus 181 ~~~~~al~~~p~~~~ 195 (1173)
..++++++.+|++..
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887653
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=2.9e-16 Score=183.48 Aligned_cols=234 Identities=11% Similarity=0.061 Sum_probs=195.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC-------
Q 045024 25 HLDLGLHLWENSESKEKAAEHFVIAAKL---NPQ---NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------- 91 (1173)
Q Consensus 25 ~~~lg~~~~~~~~~~~~A~~~~~~al~~---~p~---~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------- 91 (1173)
++.+|..+...|+ +++|+..|+++++. .++ .+.++..+|.+|.. .|++++|+.++++++++.+..
T Consensus 106 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 106 NFFRGMYELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 4459999999987 99999999999976 233 46899999999999 999999999999999985443
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCC
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIR-----GY-PTS 159 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~-----~~-p~~ 159 (1173)
..++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|++++|+..++++++ .+ |..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 3468999999999999999999999999875432 35889999999999999999999999999 46 778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD-----DTSIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.++..+|.++...|++++|+..+++++++. |.....+..+|.++...|+ +++|+..+++. +. .
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~----~ 335 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----ML----Y 335 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cC----H
Confidence 8999999999999999999999999999874 3333445779999999999 77788777765 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEAN 268 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~ 268 (1173)
.....++..+|..+...|++++|..+++++++.....
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 2334456667777777888999999999998876543
No 81
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.69 E-value=9.1e-15 Score=163.97 Aligned_cols=237 Identities=12% Similarity=0.053 Sum_probs=207.2
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES---------KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~---------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g 72 (1173)
++...|+..+.+++..+|++..+|..++.++...+.. +++++.+++.++..+|++..+|...+.++.. .|
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~ 122 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP 122 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cC
Confidence 3445679999999999999999999999999776542 6899999999999999999999999999999 88
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------
Q 045024 73 --DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK-ESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---------- 139 (1173)
Q Consensus 73 --~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------- 139 (1173)
++++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 49999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 140 ----KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL-----------GMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 140 ----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++...+..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5689999999999999999999998777666665 4689999999999999999966655555443
Q ss_pred H---HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 205 L---MLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 205 ~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
. ..|..++....+.+++++||.....+..+...+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 3 3578889999999999999988776665554443
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=5.7e-16 Score=164.44 Aligned_cols=168 Identities=10% Similarity=0.031 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHhh
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA----------------LCELLEHGGKESLEVVVCREASDK 121 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~----------------La~~~~~~g~~~~A~~~~~~al~~ 121 (1173)
+.++..|..+.. .|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.
T Consensus 5 ~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIE-AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344444555555 555555555555555555555554444 777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM--FSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ .+.+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 777777777777777777777777777777777777777777777777766543 3445566666543222 1235667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|.++...|++++|+..|+++++++|+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7777777888888888888888887763
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=3.3e-16 Score=166.27 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCCHHHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRY----------------LGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~----------------lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
++..++..|..++..|+ +++|+..|+++++.+|+++.+++. +|.++.. .|++++|+..|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ-NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 56788999999999998 999999999999999999999999 9999999 99999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHH
Q 045024 85 VSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK--WSEAVQSLQHAIRGYPTSPHL 162 (1173)
Q Consensus 85 l~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~ 162 (1173)
++++|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+ ...+...+++++...| ...+
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHH
Confidence 999999999999999999999999999999999999999999999999999987764 4566777877764333 2346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
++.+|.++...|++++|+..|+++++++|+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 7889999999999999999999999999974
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=5.9e-17 Score=162.34 Aligned_cols=144 Identities=18% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q 045024 64 GHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS 143 (1173)
Q Consensus 64 g~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 143 (1173)
|.++.. .|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 4 G~~~~~-~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRS-KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCC-HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH-cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 333334 4444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS-YGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+|+..|+++++++|+++.++..+|.+|...|++++|... ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444444444444444444433332 24444444444444444444444333
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.68 E-value=3.3e-16 Score=175.74 Aligned_cols=204 Identities=12% Similarity=0.067 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ------NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------ 91 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------ 91 (1173)
.+...|.+|...|+ +++|+..|.+++++.+. .+.++..+|.+|.. .|++++|+.+|++++++.|..
T Consensus 39 ~~~~a~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 39 LCVQAATIYRLRKE-LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHTTC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34445666766766 88888888888876432 25678888888888 888888888888888876543
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 045024 92 SVSGEALCELLEHG-GKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH--- 161 (1173)
Q Consensus 92 ~~a~~~La~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--- 161 (1173)
..++..+|.+|... |++++|+..|++++++.|.+ ..++..+|.++..+|++++|+..|++++...|++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34577888888885 88888888888888876643 456778888888888888888888888888776543
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHH--HcCChHHHHHHHHHHHhhcCCCHH
Q 045024 162 ----LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP-----LLESGNIFL--MLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 162 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
++..+|.++...|++++|+..|+++++++|+.... +..++..+. ..+++++|+..|++++.++|....
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 56778888888888888888888888888775442 334455553 356788888888887777665543
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=1.1e-16 Score=160.41 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=133.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 045024 28 LGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGK 107 (1173)
Q Consensus 28 lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~ 107 (1173)
+|.++..+++ +++|+..+++++..+|+++..++.+|.+|.. .|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 3 LG~~~~~~~~-~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKAD-VERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHH-HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcCh-HHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 6777777776 9999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 108 ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQS-LQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~-l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
+++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887765 589999999999999999999988875
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.66 E-value=7.6e-16 Score=172.83 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWEN--SESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|.+.++++-+.-+.....+ .++.. .+++++|+..|.++ |.+|.. .|++++|+..|+++
T Consensus 4 a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~-~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRL-RKELNLAGDSFLKA 63 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHH-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHH-cCCHHHHHHHHHHH
Confidence 4677777777766542222 12232 22489999999987 667889 99999999999999
Q ss_pred HhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 045024 85 VSLSPD------DSVSGEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHH-KKWSEAVQSLQH 151 (1173)
Q Consensus 85 l~~~p~------~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-g~~~~A~~~l~~ 151 (1173)
+++.+. ...++..+|.+|...|++++|+.+|++++++.|.. ..++..+|.+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 998532 24579999999999999999999999999987642 56889999999996 999999999999
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCChHHHHHHHH
Q 045024 152 AIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIF-------PLLESGNIFLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 152 al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~la~~~~~~g~~~~A~~~~~ 218 (1173)
++++.|.+ ..++..+|.++...|++++|+..|+++++..|++.. ++..+|.++..+|++++|+..|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998754 567899999999999999999999999999987643 67899999999999999999999
Q ss_pred HHHhhcCCCHHH
Q 045024 219 LALKISSENVSA 230 (1173)
Q Consensus 219 ~al~~~p~~~~a 230 (1173)
++++++|+....
T Consensus 224 ~al~l~p~~~~~ 235 (292)
T 1qqe_A 224 EGQSEDPNFADS 235 (292)
T ss_dssp GGGCC-------
T ss_pred HHHhhCCCCCCc
Confidence 999999987654
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=5.2e-15 Score=159.03 Aligned_cols=190 Identities=10% Similarity=-0.017 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH---H
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN---AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV---S 94 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~---a 94 (1173)
.+..++.+|..++..|+ +++|+..|+++++..|++ ..+++.+|.++.. .|++++|+..|+++++.+|+++. +
T Consensus 3 ~~~~~~~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN-WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 56789999999999987 999999999999998876 4789999999999 99999999999999999998865 6
Q ss_pred HHHHHHHHHHC------------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 95 GEALCELLEHG------------------GKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGY 156 (1173)
Q Consensus 95 ~~~La~~~~~~------------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~ 156 (1173)
++.+|.++... |++++|+..|+++++..|+++.+...+..+....+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------------- 144 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------------- 144 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------
Confidence 88889888763 44555555555555555554333221111100000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 157 PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI---FPLLESGNIFLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 157 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
........+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++++....|++.+
T Consensus 145 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 145 -RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0011236789999999999999999999999999875 67999999999999999999999999988887653
No 89
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.65 E-value=5.6e-16 Score=177.98 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=53.9
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVV 113 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~ 113 (1173)
..|+ .++|.+++++. +.+.+|..+|.++.. .|++++|++.|.++ +++..+...+..+...|++++|+.
T Consensus 15 ~~~~-ld~A~~fae~~-----~~~~vWs~La~A~l~-~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGN-LDRAYEFAERC-----NEPAVWSQLAKAQLQ-KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhC-----CChHHHHHHHHHHHH-cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444 78888888886 334688999999999 99999999999764 455678888888888999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 114 VCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 114 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
+++.+.+..++ +.+...++.+|.+.|+++++.+.++. | +..+|..+|..+...|++++|+..|.++
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 88888775433 66777888889999999988877752 4 3458889999999999999999999876
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 194 IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 194 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
..+..+|.++.++|++++|++.++++ .++..|.....++...|+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc
Confidence 46778899999999999999999988 367777777677766655
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=7.1e-15 Score=171.33 Aligned_cols=237 Identities=12% Similarity=0.006 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNP------QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------ 91 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------ 91 (1173)
.++.+|..++..|+ +++|+..|+++++..+ ..+.+++.+|.+|.. .|++++|+.++++++++.+..
T Consensus 103 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-MKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 57788999999987 9999999999997632 246789999999999 999999999999999875432
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 045024 92 -SVSGEALCELLEHGGKESLEVVVCREASDKSP---R---AFWAFRRLGYLQLHHKKWSEAVQSLQHAIR-----GYPTS 159 (1173)
Q Consensus 92 -~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p---~---~~~a~~~la~~~~~~g~~~~A~~~l~~al~-----~~p~~ 159 (1173)
..++..+|.++...|++++|+..++++++..+ + ...++..+|.++...|++++|+..+++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 34588999999999999999999999988633 1 356789999999999999999999999999 77878
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-----SIFPLLESGNIFLMLGN---FRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.++..+|.++...|++++|+..+++++++.+. .......++.++...|+ +.+|+..+++. .. +
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~----~ 332 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NL----H 332 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TC----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CC----h
Confidence 999999999999999999999999999998543 34456678888888888 78888887762 11 1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhh
Q 045024 232 YGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTR 270 (1173)
Q Consensus 232 ~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~ 270 (1173)
.....++..+|..+...|++++|..+++++++.......
T Consensus 333 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 333 AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 233445667777788888899999999999987766543
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=5.8e-15 Score=158.67 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------
Q 045024 5 GALLLQLEDSLEANPDD---PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV---AFRYLGHYYTRF-------- 70 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~---~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~-------- 70 (1173)
..|+..|+++++..|++ +.+++.+|.+++..|+ +++|+..|+++++.+|+++. +++.+|.++...
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~ 99 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGF 99 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34599999999999986 4789999999999998 99999999999999999864 899999998750
Q ss_pred ---------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q 045024 71 ---------SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK 141 (1173)
Q Consensus 71 ---------~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 141 (1173)
.|++++|+..|+++++.+|+++.+...+..+....+ ........+|.++...|+
T Consensus 100 ~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 100 FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp --------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTC
T ss_pred hccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCc
Confidence 368999999999999999999876543332221111 112234678999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 142 WSEAVQSLQHAIRGYPTSP---HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
+++|+..|+++++..|+++ .++..+|.++.++|++++|++.++++....|++.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999886 6799999999999999999999999999888764
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=1.6e-15 Score=167.35 Aligned_cols=215 Identities=17% Similarity=0.126 Sum_probs=174.8
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Q 045024 7 LLLQLEDSLEA--------NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRF 70 (1173)
Q Consensus 7 Ai~~l~~al~~--------~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~ 70 (1173)
|+..|+++++. +|..+.++..+|.++...|+ +++|+..|+++++. +|..+.++..+|.++..
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~- 97 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK- 97 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-
Confidence 46666666652 36678899999999999988 99999999999976 35567899999999999
Q ss_pred cCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDK--------SPRAFWAFRRLGY 134 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~ 134 (1173)
.|++++|+.+|+++++. +|....++..+|.++...|++++|+..++++++. .|....++..+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999988 4666778999999999999999999999999988 6777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCChHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRG---------YPTSPHLWEALGLAYHRLGMF------SAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~---------~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
++...|++++|+..++++++. .+.....+..++..+...+.. ..+...++......|....++..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999999986 445566777777777665443 33333443333334556778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+|.+|...|++++|+..|+++++.
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=7.8e-14 Score=161.89 Aligned_cols=241 Identities=16% Similarity=0.049 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH----
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-----VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---- 92 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---- 92 (1173)
..++..+|.++...|+ +++|+..+++++...|... .++..+|.++.. .|++++|...++++++..|...
T Consensus 14 ~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 14 AEFNALRAQVAINDGN-PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4567788999988887 9999999999998877553 267889999999 9999999999999998765432
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 045024 93 --VSGEALCELLEHGGKESLEVVVCREASDKS--------PRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT---- 158 (1173)
Q Consensus 93 --~a~~~La~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~---- 158 (1173)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 236789999999999999999999998764 334567888999999999999999999999998774
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHH-----HHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 159 -SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLL-----ESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 159 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
...++..+|.++...|++++|...+++++...+. ....+. ..+.++...|++++|...+++++...|.....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 2467889999999999999999999999887432 221221 34556889999999999999998876653211
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
. ...+...+..+...|++++|...+++++...+.
T Consensus 252 ~---~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 252 L---QGQWRNIARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp G---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1 112345566666778899999999988887665
No 94
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=6.5e-14 Score=162.57 Aligned_cols=260 Identities=14% Similarity=-0.002 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCC
Q 045024 5 GALLLQLEDSLEANPDDP-----SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSID 73 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~-----~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~ 73 (1173)
..|+..+++++...|.+. .++..+|.++...|+ +++|...+++++...|.. ..++..+|.++.. .|+
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~G~ 108 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QGF 108 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-CCC
Confidence 346999999999887653 267889999999987 999999999999765543 2347889999999 999
Q ss_pred HHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHcC
Q 045024 74 TQRAIKCYQRAVSLS--------PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-----AFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 74 ~~eA~~~~~~al~~~--------p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g 140 (1173)
+++|+..++++++.. |....++..+|.++...|++++|...+++++...+. ...++..+|.++...|
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g 188 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC
Confidence 999999999999865 233456788999999999999999999999998775 3567889999999999
Q ss_pred CHHHHHHHHHHHHHhCC--CC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCC
Q 045024 141 KWSEAVQSLQHAIRGYP--TS-PHLWE----ALGLAYHRLGMFSAAIKSYGRAIELDDTS----IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p--~~-~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~ 209 (1173)
++++|...+++++...+ .. ..... .++.++...|++++|...+++++...|.. ...+..++.++...|+
T Consensus 189 ~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 268 (373)
T 1hz4_A 189 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 268 (373)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999999987633 22 11111 34566889999999999999998877653 2356789999999999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 045024 210 FRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEA 267 (1173)
Q Consensus 210 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~ 267 (1173)
+++|...+++++...+.... ......++...+..+...|++++|...+++++.....
T Consensus 269 ~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 269 FEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 99999999999887554321 1223345566666777788899999999999887664
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=2.6e-15 Score=154.65 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
.+.++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++.....++.+.
T Consensus 6 ~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQ-QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHH-TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3445566666666 66666666666666666666666666666666666666666666666666666 554444444332
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCChHHH
Q 045024 137 L-HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 137 ~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A 213 (1173)
. ..++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2 22233456777777888888878888888888888888888888888888777764 45777788888888888888
Q ss_pred HHHHHHHHh
Q 045024 214 VEQFQLALK 222 (1173)
Q Consensus 214 ~~~~~~al~ 222 (1173)
+..|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777664
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.61 E-value=3.1e-13 Score=151.58 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=167.0
Q ss_pred HccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 045024 34 ENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID----------TQRAIKCYQRAVSLSPDDSVSGEALCELLE 103 (1173)
Q Consensus 34 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~----------~~eA~~~~~~al~~~p~~~~a~~~La~~~~ 103 (1173)
..|.-.++|+..+.+++..+|++..+|...+.+... .|. +++++..++.++..+|++..+|...+.++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 455534689999999999999999999999999988 766 688999999999999999999999999999
Q ss_pred HCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 045024 104 HGGK--ESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKK-WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL------- 173 (1173)
Q Consensus 104 ~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~------- 173 (1173)
..|+ +++++..+.++++.+|.+..+|...+.+....|. ++++++.+.+++..+|.|..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 8884 8899999999999999999999999999999998 68999999999999999999999999988877
Q ss_pred -------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhcCCCH
Q 045024 174 -------GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML-----------GNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 174 -------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 228 (1173)
+.++++++.+.+++..+|++..+|+.+.-++... +.++++++.++++++..|++.
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 5588899999999999999999997665555544 346788888888888888774
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=1.9e-14 Score=160.91 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=160.2
Q ss_pred hCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 045024 52 LNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRR 131 (1173)
Q Consensus 52 ~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 131 (1173)
..|.+...++.+|..+.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+.......
T Consensus 112 ~lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 458889999999999999 9999999999999999999999999999999999999999999999999999987777778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCC
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS--IFPLLESGNIFLMLGN 209 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~ 209 (1173)
.+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 88888899999999999999999999999999999999999999999999999999999998 8899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 045024 210 FRKGVEQFQLALK 222 (1173)
Q Consensus 210 ~~~A~~~~~~al~ 222 (1173)
.++|+..|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=9.9e-15 Score=141.30 Aligned_cols=120 Identities=16% Similarity=0.243 Sum_probs=87.2
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 118 ASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 118 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+..++|+.+.++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34456767777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 7777777777777777777777777777777766665554
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.60 E-value=3.5e-15 Score=153.60 Aligned_cols=168 Identities=13% Similarity=0.004 Sum_probs=149.6
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEA 97 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~ 97 (1173)
+|...+.++.+|..+...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+| ++.....
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence 45555678899999999998 9999999999999999999999999999999 9999999999999999999 8877666
Q ss_pred HHHHHH-HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC
Q 045024 98 LCELLE-HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRLG 174 (1173)
Q Consensus 98 La~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g 174 (1173)
++.+.. ..++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++...|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 665533 33445568999999999999999999999999999999999999999999999875 669999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIE 188 (1173)
Q Consensus 175 ~~~~A~~~~~~al~ 188 (1173)
+.++|+..|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999875
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.60 E-value=7.8e-14 Score=156.97 Aligned_cols=229 Identities=13% Similarity=-0.007 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C-CHHHHHHHH
Q 045024 4 KGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS-I-DTQRAIKCY 81 (1173)
Q Consensus 4 ~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~-g-~~~eA~~~~ 81 (1173)
...|++.+.+++..+|++..+|..++.++...+.++++++..+++++..+|++..+|..++.++.. . + ++++++..+
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCChHHHHHHH
Confidence 345799999999999999999999999998888559999999999999999999999999999999 7 7 899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC-------HHHHH
Q 045024 82 QRAVSLSPDDSVSGEALCELLEHGGKES--------LEVVVCREASDKSPRAFWAFRRLGYLQLHHKK-------WSEAV 146 (1173)
Q Consensus 82 ~~al~~~p~~~~a~~~La~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-------~~~A~ 146 (1173)
.++++.+|++..+|...+.+....|.++ ++++.++++++.+|.+..+|..++.+....++ +++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 9999999999999999999998888887 99999999999999999999999999998887 79999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CCChHHHHHH
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHRLGMF--------------------SAAIKSYGRAIELD------DTSIFPLLES 200 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~a~~~l 200 (1173)
+.+++++..+|++..+|..+..++...|+. ..-.......+... +.++.++..+
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 308 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYL 308 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHH
Confidence 999999999999999999999888887764 22222222222222 4577889999
Q ss_pred HHHHHHcCChHHHHHHHHHHH-hhcCCCHHHHHH
Q 045024 201 GNIFLMLGNFRKGVEQFQLAL-KISSENVSAHYG 233 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~ 233 (1173)
+.+|...|+.++|.+.++.+. +.+|-....|..
T Consensus 309 ~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 309 ADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 999999999999999999986 567766555543
No 101
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=1.9e-14 Score=165.35 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=128.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Q 045024 8 LLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL 87 (1173)
Q Consensus 8 i~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~ 87 (1173)
++.+++. +++.+|..+|.++...++ +++|++.|.++ +++..+...+..+.. .|++++|+.+++.+.+.
T Consensus 23 ~~fae~~-----~~~~vWs~La~A~l~~g~-~~eAIdsfika-----~D~~~y~~V~~~ae~-~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 23 YEFAERC-----NEPAVWSQLAKAQLQKGM-VKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhC-----CChHHHHHHHHHHHHcCC-HHHHHHHHHcC-----CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 4445444 345699999999999988 99999999774 466789999999999 99999999999999885
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
.++ +.+...++.+|.+.|++.++.+.++ .| +..+|..+|..+...|+|++|..+|.++ ..|..+|
T Consensus 91 ~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA 155 (449)
T 1b89_A 91 ARE-SYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 155 (449)
T ss_dssp -------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred Ccc-chhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence 444 6778899999999999999888775 24 3469999999999999999999999987 3688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCIN 247 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a 247 (1173)
.++.++|++++|++.++++ +++.+|...+.++...|+++.|..+...+ ..+|++ ...+...|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-~~~ad~---l~~lv~~Yek------- 219 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADE---LEELINYYQD------- 219 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-TTCHHH---HHHHHHHHHH-------
T ss_pred HHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-HhCHhh---HHHHHHHHHH-------
Confidence 9999999999999999999 47899999999999999999998777653 344443 2234444544
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHhhHhhhhHHHHHH
Q 045024 248 LGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVSWKTTCLMAAISS 327 (1173)
Q Consensus 248 ~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~A 327 (1173)
.|.+++++.+++. .....+....++..++..+... ..++..+.
T Consensus 220 ~G~~eEai~lLe~-------aL~le~ah~~~ftel~il~~ky------------------------------~p~k~~eh 262 (449)
T 1b89_A 220 RGYFEELITMLEA-------ALGLERAHMGMFTELAILYSKF------------------------------KPQKMREH 262 (449)
T ss_dssp TTCHHHHHHHHHH-------HTTSTTCCHHHHHHHHHHHHTT------------------------------CHHHHHHH
T ss_pred CCCHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHhc------------------------------CHHHHHHH
Confidence 4445555555544 4444455455555554444222 12335577
Q ss_pred HHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhhHHHhhh
Q 045024 328 KSSYQRALYLAP-----WQANIYTDIAITSDLIYSLNEAYG 363 (1173)
Q Consensus 328 ~~~~~~al~l~p-----~~~~~~~~la~~~~~~g~~~eA~~ 363 (1173)
++.|...+.+.| .++..|..+..+|...++++.|..
T Consensus 263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 788887787777 788899999999999999998844
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=9.8e-15 Score=161.07 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHH
Q 045024 38 SKEKAAEHFVIAAKL--------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS--------PDDSVSGEALCEL 101 (1173)
Q Consensus 38 ~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~--------p~~~~a~~~La~~ 101 (1173)
++++|+..|+++++. +|..+.++..+|.++.. .|++++|+..|+++++.. |....++..+|.+
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 377888888888763 35667899999999999 999999999999999873 5556779999999
Q ss_pred HHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Q 045024 102 LEHGGKESLEVVVCREASDK--------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG--------YPTSPHLWEA 165 (1173)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~ 165 (1173)
+...|++++|+..+++++.. +|....++..+|.++...|++++|+..++++++. .|....++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999988 4667889999999999999999999999999998 6677889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----cCCCHHHHH
Q 045024 166 LGLAYHRLGMFSAAIKSYGRAIEL---------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI----SSENVSAHY 232 (1173)
Q Consensus 166 la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~ 232 (1173)
+|.++...|++++|+..++++++. .+.....+..++..+...+....+.. +..+... .+..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 249 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSP---- 249 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCH----
Confidence 999999999999999999999987 44556677777777776655544433 2222211 11222
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 045024 233 GLASGLLGLAKQCINLGAFRWGASLLEDACK 263 (1173)
Q Consensus 233 ~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~ 263 (1173)
....++..+|..+...|++++|...++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234455566666667778888888887765
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=1.3e-14 Score=140.58 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
+|+.+.++..+|..++. .|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus 9 nP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 33333333333333333 33333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
|.++..+|++++|+..|+++++++|++..++.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 33333333333333333333333333333333
No 104
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=1.6e-13 Score=159.95 Aligned_cols=249 Identities=10% Similarity=-0.003 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDD------TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA 235 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 235 (1173)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+..++++++..+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987642 23568889999999999999999999999998776554334677
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHhchHHHHHhhccchhhhhhchhhhhhhhhhhhHh
Q 045024 236 SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQSLEFDVETFSASIVS 315 (1173)
Q Consensus 236 ~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 315 (1173)
.++..+|..+...|++++|...+++|++..+..... ...+.++..+|.++...+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~------------------------- 236 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSG------------------------- 236 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCC-------------------------
Confidence 888888989999999999999999999987654221 133444455555544433
Q ss_pred hHhhhhHHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHH
Q 045024 316 WKTTCLMAAISSKSSYQRALY-----LAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFW 390 (1173)
Q Consensus 316 ~~~~~~~~~~~A~~~~~~al~-----l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~ 390 (1173)
++++|+..|++++. .+|..+.++..+|.++...|++++|... +++++...+...
T Consensus 237 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-----------~~~al~~~~~~~--- 295 (378)
T 3q15_A 237 -------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF-----------IEEGLDHITARS--- 295 (378)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH-----------HHHHHHHCCTTC---
T ss_pred -------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH-----------HHHHHHHHHHcC---
Confidence 36678888888887 6777777888888888888888777332 333333322110
Q ss_pred HHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcC
Q 045024 391 VTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGE---KKLARQAFDSARSIDPSLALPWAGMSADVQASES 467 (1173)
Q Consensus 391 ~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~---~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g 467 (1173)
+|.....+..++.+|...|+ +.+|+..+++. ...|.....+.. +|.+|...|
T Consensus 296 -----------------------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~-la~~y~~~g 350 (378)
T 3q15_A 296 -----------------------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS-AAAVFESSC 350 (378)
T ss_dssp -----------------------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH-HHHHHHHTT
T ss_pred -----------------------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH-HHHHHHHCC
Confidence 23333445666777777777 66777766652 122223334444 666777788
Q ss_pred CHHHHHHHHHHHHhc
Q 045024 468 LVDDAFESCLRAVQI 482 (1173)
Q Consensus 468 ~~~eA~~~~~~al~~ 482 (1173)
++++|...|+++++.
T Consensus 351 ~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 351 HFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888877777654
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.58 E-value=3.2e-14 Score=159.06 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=162.4
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSG 95 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~ 95 (1173)
...|++...++.+|..+...|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|++++..+|+.....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESN-YTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHH
Confidence 3459999999999999999988 9999999999999999999999999999999 9999999999999999999777777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q 045024 96 EALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS--PHLWEALGLAYHRL 173 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~ 173 (1173)
...+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 7777778899999999999999999999999999999999999999999999999999999988 88999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 045024 174 GMFSAAIKSYGRAIE 188 (1173)
Q Consensus 174 g~~~~A~~~~~~al~ 188 (1173)
|+.++|+..|++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.56 E-value=9.8e-14 Score=171.09 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
+++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666666666666666666666666666 666666666666666666666666666666666666666666666666
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL---GMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++... |++++|++.++++++.+|++..
T Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 6666666666666666666666666666666666666666666666666666666 6666666666666666666555
Q ss_pred HHHHHH
Q 045024 196 PLLESG 201 (1173)
Q Consensus 196 a~~~la 201 (1173)
.+..++
T Consensus 164 ~~~~l~ 169 (568)
T 2vsy_A 164 PFAFLS 169 (568)
T ss_dssp HHHHTT
T ss_pred hHHHhC
Confidence 544433
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.56 E-value=5e-14 Score=173.70 Aligned_cols=165 Identities=22% Similarity=0.154 Sum_probs=141.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHhhcCCC
Q 045024 151 HAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLML---GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 151 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 227 (1173)
++++.+|+++.++..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHHHH
Q 045024 228 VSAHYGLA 235 (1173)
Q Consensus 228 ~~a~~~la 235 (1173)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 87765554
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=4.6e-13 Score=150.65 Aligned_cols=244 Identities=12% Similarity=0.019 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI-DTQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g-~~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
.++-.+..+. ..++..++|+..+++++..+|++..+|..++.++.. .| ++++++..+++++..+|++..+|...+.+
T Consensus 55 ~~~~~~r~~~-~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIA-AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHH-HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444444444 344436899999999999999999999999999999 99 59999999999999999999999999999
Q ss_pred HHHC-C-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 102 LEHG-G-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWS--------EAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 102 ~~~~-g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~--------~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
+... + ++++++..+.++++.+|++..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9887 8 9999999999999999999999999999999988888 9999999999999999999999999999
Q ss_pred HcCC-------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhhc
Q 045024 172 RLGM-------FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNF--------------------RKGVEQFQLALKIS 224 (1173)
Q Consensus 172 ~~g~-------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~ 224 (1173)
..++ ++++++.+++++..+|++..+|+.+..++...|+. .+-.+.....+...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 9987 79999999999999999999999999998887765 22222222222222
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh-hhcCChHHHHHHh
Q 045024 225 ------SENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANT-RLAGNMSCIWKLH 282 (1173)
Q Consensus 225 ------p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~-~~~~~~~~~~~~~ 282 (1173)
+.++.+...++.++...|+ . ++|++.+.... ..+|.....|...
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~-------~-------~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNR-------V-------DDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTC-------H-------HHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCC-------H-------HHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3556677777777766544 3 44555544443 4455555555443
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.53 E-value=2.7e-14 Score=142.67 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=104.3
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..++++++++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
++.+++.+|.+|..+|++++|+..|+++++..|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999988754
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.53 E-value=2.2e-14 Score=156.31 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCCHHHHHHHHHHHHhhCCCCH----
Q 045024 24 LHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYL-------GHYYTRFSIDTQRAIKCYQRAVSLSPDDS---- 92 (1173)
Q Consensus 24 ~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l-------g~~~~~~~g~~~eA~~~~~~al~~~p~~~---- 92 (1173)
.++..|.-+ ..+ ++..|...|.+++..+|+.+++|..+ +.++.. .++..+++..+++.+.+.|...
T Consensus 9 ~~~~~~~~~-~~~-d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~-~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 9 SLFESAVSM-LPM-SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFR-AWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHH-TTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHH-HHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHhcc-cCC-CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHH-HHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 345556655 444 49999999999999999999999999 899999 9999999999999999877543
Q ss_pred -----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 93 -----------------VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 93 -----------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~ 155 (1173)
+....++.++...|++++|.+.|..++...|++. +.+.+|.++++.++|++|+..|+++...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 3455688999999999999999999999999888 9999999999999999999999987665
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 156 YPTS--PHLWEALGLAYHRLGMFSAAIKSYGRAIELD--DT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 156 ~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
.+.. ..+++.+|.++..+|++++|+..|++++... |. ...+++.+|.++..+|+.++|...|++++..+|+ ..+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 3221 3589999999999999999999999998654 55 5679999999999999999999999999999999 765
Q ss_pred HHH
Q 045024 231 HYG 233 (1173)
Q Consensus 231 ~~~ 233 (1173)
...
T Consensus 244 ~~a 246 (282)
T 4f3v_A 244 AAA 246 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.51 E-value=3.4e-14 Score=141.91 Aligned_cols=116 Identities=10% Similarity=-0.086 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..++++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
++.+++.+|.+|...|++++|+..|++++++.|+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777777777776643
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=1e-12 Score=139.74 Aligned_cols=176 Identities=17% Similarity=0.101 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC----CHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG----KESLEVVVC 115 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g----~~~~A~~~~ 115 (1173)
.+|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~-~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVS-SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566667766654 566777777777777 77777777777777653 466677777777766 5 677777777
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 045024 116 REASDKSPRAFWAFRRLGYLQLH----HKKWSEAVQSLQHAIRGYP--TSPHLWEALGLAYHR----LGMFSAAIKSYGR 185 (1173)
Q Consensus 116 ~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 185 (1173)
+++.+ +.++.+++.+|.+|.. .+++++|+..|+++.+..| .++.+++.+|.+|.. .+++++|+..|++
T Consensus 77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 77743 4566777777777766 6677777777777777666 346777777777777 6777777777777
Q ss_pred HHHhCCCChHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhhc
Q 045024 186 AIELDDTSIFPLLESGNIFLML-G-----NFRKGVEQFQLALKIS 224 (1173)
Q Consensus 186 al~~~p~~~~a~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 224 (1173)
+++. |.++.+++.+|.+|... | ++++|+.+|+++.+..
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776 55666777777777653 2 6777777777777653
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.49 E-value=7.9e-14 Score=155.33 Aligned_cols=198 Identities=13% Similarity=-0.012 Sum_probs=161.1
Q ss_pred CCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 045024 19 PDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEAL 98 (1173)
Q Consensus 19 P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~L 98 (1173)
|.++..++.+|..++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 6778899999999999987 9999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 045024 99 CELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA 178 (1173)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 178 (1173)
|.++...|++++|+..|+++++.+|+++..+......... ..++...........|.+......++.++ .|++++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 9999999999999999999999988653222111111111 22223333333456677777777777765 699999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHhh
Q 045024 179 AIKSYGRAIELDDTSIFPLLESGNIFLML-GNFRKGVEQFQLALKI 223 (1173)
Q Consensus 179 A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~ 223 (1173)
|++.++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999888878888777776 7788999999888764
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.49 E-value=6e-13 Score=150.27 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 045024 6 ALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAV 85 (1173)
Q Consensus 6 aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al 85 (1173)
+|.+.++++.+..+.. ++..++++++|+..|.++ |.+|.. .|++++|+..|.+++
T Consensus 9 eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~-~g~~~~A~~~~~~al 63 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKN-AKQLEQAKDAYLQEA 63 (307)
T ss_dssp HHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHH-cCCHHHHHHHHHHHH
Confidence 4578888887766642 122123488888888875 678889 999999999999999
Q ss_pred hhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 86 SLSPDD------SVSGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAI 153 (1173)
Q Consensus 86 ~~~p~~------~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al 153 (1173)
++.+.. ..++..+|.+|...|++++|+.+|++++++.+. ...++..+|.+|.. |++++|+..|++++
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 886533 346889999999999999999999999887432 24678899999998 99999999999999
Q ss_pred HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045024 154 RGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLAL 221 (1173)
Q Consensus 154 ~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al 221 (1173)
.+.|.. ..++..+|.+|...|++++|+..|++++++.|.+ ..++..+|.++..+|++++|+..|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 987643 5688999999999999999999999999986653 3477889999999999999999999999
Q ss_pred hhcCCCHHH
Q 045024 222 KISSENVSA 230 (1173)
Q Consensus 222 ~~~p~~~~a 230 (1173)
.+|.....
T Consensus 223 -~~p~~~~~ 230 (307)
T 2ifu_A 223 -SIPGFSGS 230 (307)
T ss_dssp -TSTTSTTS
T ss_pred -CCCCCCCC
Confidence 99976543
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.48 E-value=5.7e-15 Score=169.11 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=134.5
Q ss_pred HHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVI----AAKLNPQNAVAFRYLGHYYT------------RFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL 102 (1173)
Q Consensus 39 ~~~A~~~~~~----al~~~p~~~~a~~~lg~~~~------------~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~ 102 (1173)
+++|+..+.. ++.++|+. ++...|.... . .+++++|+..|+++++.+|++..++..+|.++
T Consensus 81 ~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~-L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 81 LERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELH-LKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp HHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEE-EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEE-EeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 6777777777 66677765 4444443332 3 45666677777777777777777777777777
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRA---------------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
...|++++|+..|++++...|++ ..++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 237 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 77777777777777777777766 577888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG-VEQFQLALK 222 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-~~~~~~al~ 222 (1173)
.+|...|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888777 445666554
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.48 E-value=2.8e-13 Score=135.07 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=103.8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 112 VVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD 191 (1173)
Q Consensus 112 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 191 (1173)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577788888888888888888888888888888888888888888888888888888888999999999999888888
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 192 TSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 192 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+++.+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 8888888889999999999999999999888888877653
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.47 E-value=3.1e-12 Score=135.90 Aligned_cols=185 Identities=15% Similarity=0.018 Sum_probs=163.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---CHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI---DTQRAIKCYQR 83 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g---~~~eA~~~~~~ 83 (1173)
|+..|+++.+. .++.+++.+|.+|...++ +++|+.+|+++++. .++.+++.+|.+|.. .| ++++|+.+|++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGD-YQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 68899999875 789999999999999887 99999999999865 689999999999988 44 89999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 045024 84 AVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREASDKSP--RAFWAFRRLGYLQLH----HKKWSEAVQSLQHAI 153 (1173)
Q Consensus 84 al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~g~~~~A~~~l~~al 153 (1173)
+.+ +.++.+++.+|.+|.. .+++++|+..|+++.+..| +++.+++.+|.+|.. .+++++|+..|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 965 6789999999999988 8999999999999999988 458999999999999 899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 045024 154 RGYPTSPHLWEALGLAYHRL-G-----MFSAAIKSYGRAIELDDTSIFPLLESGN 202 (1173)
Q Consensus 154 ~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~a~~~la~ 202 (1173)
+. |.++.+++.+|.+|... | ++++|+..|+++.+.. +..+...++.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 98 77788999999999864 3 8999999999999875 4445444443
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.46 E-value=1.6e-13 Score=136.82 Aligned_cols=118 Identities=14% Similarity=-0.085 Sum_probs=82.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 79 KCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 79 ~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..|+++++++|++..+++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45666666666666667777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 159 SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 159 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++.+++.+|.++...|++++|+..|+++++++|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777777777777777777777777777776665543
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=2.9e-12 Score=123.40 Aligned_cols=129 Identities=29% Similarity=0.421 Sum_probs=52.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
+.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 5 ~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH-cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444 4444444444444444444443333334444433344444444444433333333333333444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 045024 141 KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD 190 (1173)
Q Consensus 141 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 190 (1173)
++++|+..+++++...|.+..++..+|.++...|++++|+..++++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 44444444444444444333333444444444444444444444443333
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=3.4e-12 Score=122.94 Aligned_cols=135 Identities=26% Similarity=0.383 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.+++.+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.|++++|+..++++++..|.+..++..+|.++...|++++|...|++++..+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.45 E-value=9.1e-13 Score=130.21 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT 192 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 192 (1173)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 193 SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 193 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
++.+++.+|.++...|++++|+..|+++++.+|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999988888766544444333
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=5.2e-14 Score=161.09 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=154.2
Q ss_pred cCCHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQR----AVSLSPDDSVSGEALCELLE------------HGGKESLEVVVCREASDKSPRAFWAFRRLGY 134 (1173)
Q Consensus 71 ~g~~~eA~~~~~~----al~~~p~~~~a~~~La~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 134 (1173)
.+.+++|+..+++ ++.+.|+. ++...|.... ..+++++|+..+++++...|+++.++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4568888888888 88888886 3334443322 4567788999999988889999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTS---------------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLE 199 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 199 (1173)
+++..|++++|+..|++++.++|.+ ..++.++|.+|...|++++|+..|+++++++|+++.+++.
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 045024 200 SGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAK 243 (1173)
Q Consensus 200 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~ 243 (1173)
+|.+|..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=4.2e-13 Score=163.81 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=178.2
Q ss_pred HHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 045024 32 LWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID----------TQRAIKCYQRAVSLSPDDSVSGEALCEL 101 (1173)
Q Consensus 32 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~----------~~eA~~~~~~al~~~p~~~~a~~~La~~ 101 (1173)
....++..++|+..+++++..+|++..+|+.++.++.. .|+ +++++..++++++.+|++..+|...+.+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455545899999999999999999999999999999 888 9999999999999999999999999999
Q ss_pred HHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----
Q 045024 102 LEHGG--KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK-KWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL----- 173 (1173)
Q Consensus 102 ~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~----- 173 (1173)
+...| +++++++.++++++.+|++..+|...+.+....| .+++++++++++++.+|.+..+|..++.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 6799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH------------HHHHHHHHHhhcCCC
Q 045024 174 ---------GMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRK------------GVEQFQLALKISSEN 227 (1173)
Q Consensus 174 ---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 227 (1173)
+.++++++.+.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999988766 556677777777653
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.43 E-value=7.2e-13 Score=147.51 Aligned_cols=182 Identities=14% Similarity=0.004 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLG 133 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 133 (1173)
|.++..+..+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHH
Q 045024 134 YLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKG 213 (1173)
Q Consensus 134 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 213 (1173)
.++...|++++|+..|+++++++|++...+...+.... +..++...........|.+......++.++ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999998865322221222222 122233333334456677777777777765 7999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 214 VEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 214 ~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
++.++++++.+|++......+...+...
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 9999999999998876665555544443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=3.2e-13 Score=164.90 Aligned_cols=191 Identities=11% Similarity=0.057 Sum_probs=176.3
Q ss_pred ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 045024 2 DEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSES---------KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSI 72 (1173)
Q Consensus 2 d~~~aAi~~l~~al~~~P~~~~~~~~lg~~~~~~~~~---------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g 72 (1173)
++..+|++.+.+++..+|++..+|+.++.++...+++ +++++..++++++.+|++..+|+.++.++.. .|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence 3455679999999999999999999999999888764 8999999999999999999999999999999 99
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----------
Q 045024 73 --DTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG-KESLEVVVCREASDKSPRAFWAFRRLGYLQLHH---------- 139 (1173)
Q Consensus 73 --~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------- 139 (1173)
+++++++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 7799999999999999999999999999999999 899999999999999999999999999999885
Q ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCCC
Q 045024 140 ----KKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA------------AIKSYGRAIELDDTS 193 (1173)
Q Consensus 140 ----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~p~~ 193 (1173)
+.++++++.+++++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 668999999999999999999999999999999998766 566677777777653
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.42 E-value=1.1e-12 Score=148.18 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=166.1
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 045024 35 NSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVV 114 (1173)
Q Consensus 35 ~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~ 114 (1173)
.++ +++|..+++++.+..+.. .+.. .+++++|...|.++ +.+|...|++++|+..
T Consensus 4 ~~~-~~eA~~~~~~a~k~~~~~---------~~~~-~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQK-ISEAHEHIAKAEKYLKTS---------FMKW-KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHH-HHHHHHHHHHHHHHHCCC---------SSSC-SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cch-HHHHHHHHHHHHHHcccc---------ccCC-CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 344 899999999998776642 1222 58899999999886 5688899999999999
Q ss_pred HHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHH
Q 045024 115 CREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT--S----PHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 115 ~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
|.++++..+. ...++..+|.+|..+|++++|+..|++++.+.+. + ..++..+|.+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9999887653 2568899999999999999999999999987542 2 4678899999999 999999999
Q ss_pred HHHHHHhCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 045024 183 YGRAIELDDTS------IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGAS 256 (1173)
Q Consensus 183 ~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~ 256 (1173)
|++++++.|.. ..++..+|.++..+|++++|+..|++++++.|++.. ....+..+...+..+...|++++|+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999987653 567889999999999999999999999998776543 33555567777777777888888888
Q ss_pred HHHHHH
Q 045024 257 LLEDAC 262 (1173)
Q Consensus 257 ~l~~Al 262 (1173)
.+++++
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888877
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.41 E-value=6.2e-13 Score=131.38 Aligned_cols=118 Identities=16% Similarity=-0.035 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.|+++++.+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+.+++.+|.++...|++++|+..|+++++++|+++...
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 66666666666666666666666666666666555443
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=4.2e-13 Score=146.17 Aligned_cols=193 Identities=9% Similarity=-0.068 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCcHHHHHHHHHHHHHhCCCCH--------------------
Q 045024 5 GALLLQLEDSLEANPDDPSLHLDL-------GLHLWENSESKEKAAEHFVIAAKLNPQNA-------------------- 57 (1173)
Q Consensus 5 ~aAi~~l~~al~~~P~~~~~~~~l-------g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------- 57 (1173)
..|.+.|.+++..+|+..++|..+ +.++..... +.+++..+.+.+.+.|...
T Consensus 23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r 101 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSP 101 (282)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSH
T ss_pred HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCH
Confidence 346999999999999999999999 899988887 7999999999999777643
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHH
Q 045024 58 -VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA--FWAFRRLGY 134 (1173)
Q Consensus 58 -~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~ 134 (1173)
++...++.++.. .|++++|.+.|+.++...|++. +.+.+|.++...+++++|+..|+++....+.. ..+++.+|.
T Consensus 102 ~dl~LayA~~L~~-~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 102 LAITMGFAACEAA-QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 445568899999 9999999999999999999888 99999999999999999999999887653221 458999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGY--PT-SPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
++..+|++++|+..|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+ ..+...+.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999998654 55 6679999999999999999999999999999999 77665554
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=7.5e-12 Score=120.47 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=88.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhc------CCCHHHHHHHHHHH
Q 045024 204 FLMLGNFRKGVEQFQLALKIS------SENVSAHYGLASGL 238 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~ 238 (1173)
+..+|++++|+..|+++++.+ |++..++..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888877 66666655555443
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.2e-11 Score=118.94 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
.+..++.+|..++..|+ +++|+..|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++|+++.+++.+|.
T Consensus 3 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34555555665555554 5666666666666666666666666666666 666666666666666666655555555555
Q ss_pred HHHHCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 045024 101 LLEHGGKESLEVVVCREASDKS------PRAFWAFRRLGYLQ 136 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~ 136 (1173)
++...|++++|+..|+++++.+ |++..++..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555555 55555554444443
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.35 E-value=6e-12 Score=129.10 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=97.3
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA-YHRLGMF--SAA 179 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 179 (1173)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456777777777777777777777777788888888888888888888888888777788888887 6777887 888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 180 IKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 180 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888888888888888888888888888887776543
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=2.7e-11 Score=128.05 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=91.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 4556666666666666666666664 22 45666667777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH
Q 045024 175 MFSAAIKSYGRAIELDDTSI----------------FPLLESGNIFLMLGNFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 228 (1173)
++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 77777777777777666555 7777777777777888888877877777777653
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=2.2e-11 Score=128.69 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.++.+|..+.. .|++++|+..|++++ +| ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 8 ~~~~~g~~~~~-~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAAD-KKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34555666666 666666666666653 22 455566666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSP----------------HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS 193 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 193 (1173)
.|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666666555544 777788888888888888888888888777765
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.35 E-value=6.3e-12 Score=128.93 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=69.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCH--HHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL-QLHHKKW--SEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~A~~ 147 (1173)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555 4555555 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 148 SLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
.+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 66666666665555666666666666666666666666666655544
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.35 E-value=1.2e-12 Score=137.20 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREA 118 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~a 118 (1173)
+++|.+.++......+..+..+..+|..+.. .|++++|+..|+++++..|.++..... ........
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~ 85 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQ-------------ILLDKKKN 85 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCH-------------HHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccchh-------------hHHHHHHH
Confidence 4445444444444444444555555555555 555555555555555555444310000 00000000
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
+ ...++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus 86 ~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 86 I-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred H-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 0 02556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCChHHHH
Q 045024 199 ESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~ 214 (1173)
.++.++...++..++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555554
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.35 E-value=2.7e-11 Score=121.99 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH 138 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 138 (1173)
.+..+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 15 ~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44444444444 45555555555554444444444444444444444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 045024 139 HKKWSEAVQSLQHAIRGYPTSPHLWEAL--GLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 139 ~g~~~~A~~~l~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a 186 (1173)
.|++++|+..|++++..+|.+..++..+ +..+...|++++|+..+.++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 4444444444444444444444444222 22244444444444444443
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=3.8e-11 Score=134.36 Aligned_cols=170 Identities=5% Similarity=-0.031 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSV------SGEALCELLEHGGKESLEVVVCREASDKSPRA-- 125 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~------a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-- 125 (1173)
|.....+...+..+.. .|++++|+..++++++..|.... .++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~-~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCK-QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4445567788889999 99999999999999998877653 36678888999999999999999999765443
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 045024 126 ----FWAFRRLGYLQLHHKKWSEAVQSLQHAI---RGYPTSP----HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-- 192 (1173)
Q Consensus 126 ----~~a~~~la~~~~~~g~~~~A~~~l~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 192 (1173)
..++..+|.+|...|++++|+..|++++ +..|++. .++.++|.+|...|++++|+..+++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 4566543 68899999999999999999999999987533
Q ss_pred ----ChHHHHHHHHHHHHcCChHHH-HHHHHHHHhhc
Q 045024 193 ----SIFPLLESGNIFLMLGNFRKG-VEQFQLALKIS 224 (1173)
Q Consensus 193 ----~~~a~~~la~~~~~~g~~~~A-~~~~~~al~~~ 224 (1173)
...+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267889999999999999999 78899988753
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.34 E-value=2.7e-09 Score=128.16 Aligned_cols=208 Identities=8% Similarity=-0.110 Sum_probs=150.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHHHHHHhhcCCCHHHHHHHHHhhcccHHHHH
Q 045024 326 SSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQH 405 (1173)
Q Consensus 326 ~A~~~~~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~~~~~~~~A~k~~~~al~~~p~~~~~~~~Lg~~~~~~~~a~~ 405 (1173)
.....|++++...|..+.+|...+..+...|+.++| ...+.+++.. |.+...|...+...........
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~a-----------r~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~ 264 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKA-----------KKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGD 264 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHH-----------HHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHH
Confidence 466899999999999999999999998888888776 5667889999 9998888776654221111111
Q ss_pred HHHHHH--h-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHh-cCCHHHHHHH
Q 045024 406 ALIRGL--Q-------LDVSLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQAS-ESLVDDAFES 475 (1173)
Q Consensus 406 a~~kal--~-------l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~-~g~~~eA~~~ 475 (1173)
.+...+ . ..+....+|...+....+.++.+.|...|+++ ...+.....|... +..-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~-A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC-AFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH-HHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH-HHHHHHHCCChHHHHHH
Confidence 111110 0 01123467888999988899999999999999 4333344566552 323333 4479999999
Q ss_pred HHHHHhcCCc-hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q 045024 476 CLRAVQILPL-AEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAIS 553 (1173)
Q Consensus 476 ~~~al~~~p~-~~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~ 553 (1173)
|+.+++..|. ++....++.+....|+ .+.|...++++ +.....|......-...|+.+.+..++++++..+.
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~--~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGD--EENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC--HHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 9999998885 5555556666666665 45777777776 45678888888888889999999999999987665
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.34 E-value=1.8e-12 Score=135.91 Aligned_cols=129 Identities=12% Similarity=-0.003 Sum_probs=101.7
Q ss_pred HhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCCHHHHHH
Q 045024 16 EANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA----------------VAFRYLGHYYTRFSIDTQRAIK 79 (1173)
Q Consensus 16 ~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~a~~~lg~~~~~~~g~~~eA~~ 79 (1173)
...+..+..+..+|..++..++ +++|+..|++++...|.++ .++..+|.++.. .|++++|+.
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~ 109 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAID 109 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHH
Confidence 3344567789999999999987 9999999999999999887 777778888888 888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045024 80 CYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAV 146 (1173)
Q Consensus 80 ~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 146 (1173)
.++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...++..++.
T Consensus 110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777777777777777777777777777777777777777777777766666655
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.33 E-value=3.7e-11 Score=121.00 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 045024 92 SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYH 171 (1173)
Q Consensus 92 ~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 171 (1173)
...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhh
Q 045024 172 RLGMFSAAIKSYGRAIELDDTSIFPLLE--SGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 172 ~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
..|++++|+..|+++++.+|++..++.. ++..+...|++++|+..+++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888888888888888777744 444477788888888888876553
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=5e-11 Score=133.38 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA------VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
+|+....+...+..+...++ +++|+..+.++++..|... ..++.+|.++.. .|++++|+..|+++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~-y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKR-YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHTTCCCS
T ss_pred chhHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcC
Confidence 34455667788888988987 9999999999999888764 346778999999 999999999999999876543
Q ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 92 ------SVSGEALCELLEHGGKESLEVVVCREAS---DKSPRA----FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 92 ------~~a~~~La~~~~~~g~~~~A~~~~~~al---~~~p~~----~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
..++..+|.+|...|++++|+.+|++++ +..|++ ..+++.+|.+|..+|++++|+..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999998 556653 268999999999999999999999999987542
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 045024 159 ------SPHLWEALGLAYHRLGMFSAA-IKSYGRAIEL 189 (1173)
Q Consensus 159 ------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 189 (1173)
...++..+|.+|...|++++| ...|++++.+
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 277899999999999999999 7889999864
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.32 E-value=2e-11 Score=116.99 Aligned_cols=115 Identities=19% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGN 209 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 209 (1173)
++++|+..|+++++.+|++..++..++.++...|+
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444444433
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.32 E-value=1.6e-11 Score=117.78 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 045024 55 QNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGY 134 (1173)
Q Consensus 55 ~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 134 (1173)
.++..+..+|..+.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMK-VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 344455555555555 5555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM 175 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 175 (1173)
++...|++++|+..++++++.+|+++.++..++.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555666666666666655555555555555555555554
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.31 E-value=2.8e-11 Score=122.51 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=103.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
.+.++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
.++..+|++++|+..|+++++++|++..+++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999988766544443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-11 Score=117.04 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 176 (1173)
.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 177 SAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 177 ~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
++|+..|+++++.+|.+..++..++.++
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3333333333333333333333333333
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-11 Score=117.61 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 045024 56 NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYL 135 (1173)
Q Consensus 56 ~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 135 (1173)
.+.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHH-TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34444455555555 55555555555555555554444555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 136 QLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 136 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+...|++++|+..|++++..+|.+..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555544443
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.28 E-value=3.1e-11 Score=122.18 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 33333333333333333333333333333333333333333333444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCChH
Q 045024 175 MFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~ 195 (1173)
++++|+..|+++++++|++..
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHhCCCchH
Confidence 444444444444444443333
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=1.3e-10 Score=110.22 Aligned_cols=112 Identities=24% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQL 137 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 137 (1173)
.+++.+|.++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 10 ~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444444444 4444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAY 170 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 170 (1173)
..|++++|+..+++++..+|+++.++..++.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.27 E-value=1.6e-10 Score=109.66 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444444444455555555555555555555544444444444444544444
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLM 206 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 206 (1173)
.|++++|+..++++++.+|++..++..++.++..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 4555555555544444444444444444444433
No 150
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=9.3e-11 Score=129.34 Aligned_cols=183 Identities=9% Similarity=-0.042 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 045024 42 AAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSP--DDSVSGEALCELLEHGGKESLEVVVCREAS 119 (1173)
Q Consensus 42 A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p--~~~~a~~~La~~~~~~g~~~~A~~~~~~al 119 (1173)
|+..|++.+...+....+++.+|.++.. .|++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~-~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAI-LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556666666556667788899999999 9999999999999999987 888999999999999999999999999999
Q ss_pred hhCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 120 DKSPR------AFWAFRRLGYLQLHHK--KWSEAVQSLQHAIRGYPT--SPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 120 ~~~p~------~~~a~~~la~~~~~~g--~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+.+|+ .......-+.+.+..| ++.+|...|+++....|+ .+..+++ ++..+|++++|.+.++.+++.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 99983 3334444455577667 999999999999888886 2333333 899999999999999988776
Q ss_pred ----------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHH
Q 045024 190 ----------DDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSA 230 (1173)
Q Consensus 190 ----------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 230 (1173)
+|+++.++.+++.+...+|+ +|.++++++.+.+|+++..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 48899999999999999997 8999999999999999854
No 151
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=9.1e-09 Score=123.51 Aligned_cols=207 Identities=8% Similarity=-0.090 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC-HHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSID-TQRAIKCYQRAV 85 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~-~~eA~~~~~~al 85 (1173)
|...|++++...|. ++ ++.+...|++++...| +.+.|......... .++ .+.....|++++
T Consensus 14 aR~vyer~l~~~P~---------------~~-~e~~~~iferal~~~p-s~~LW~~Y~~f~~~-~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 14 PSAIMEHARRLYMS---------------KD-YRSLESLFGRCLKKSY-NLDLWMLYIEYVRK-VSQKKFKLYEVYEFTL 75 (493)
T ss_dssp HHHHHHHHHHHHHT---------------TC-HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHH-HC----CTHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---------------CC-HHHHHHHHHHHhccCC-CHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 46677777777765 55 9999999999999888 78899888888888 664 456778889888
Q ss_pred hh---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHH-------------HHcCCHHH
Q 045024 86 SL---SPDDSVSGEALCELLE----HGGKESLEVVVCREASDKSPRAFWA-FRRLGYLQ-------------LHHKKWSE 144 (1173)
Q Consensus 86 ~~---~p~~~~a~~~La~~~~----~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~-------------~~~g~~~~ 144 (1173)
.. +|.+...|...+..+. .+|+.+.+..+|++++...+.+..- |......- ...+.+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 74 6788888888887754 3467889999999999864333222 22111111 11234455
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHH
Q 045024 145 AVQSLQHAIRGYPT-SPHLWEALGLAYHRL--GM-----FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 145 A~~~l~~al~~~p~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
|...++.+....+. +...|......-... |- .+.....|++++...|..+..|+..+..+...|+.++|...
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56566655544332 444565544443321 11 34577899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHH
Q 045024 217 FQLALKISSENVSAHY 232 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~ 232 (1173)
|++++.. |.+...+.
T Consensus 236 ~erAi~~-P~~~~l~~ 250 (493)
T 2uy1_A 236 VERGIEM-SDGMFLSL 250 (493)
T ss_dssp HHHHHHH-CCSSHHHH
T ss_pred HHHHHhC-CCcHHHHH
Confidence 9999999 98876554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.25 E-value=4.2e-11 Score=115.72 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-------FPL 197 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~ 197 (1173)
...++..+|..++..|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456778888888888888888888888888888888888888888888888888888888888877642 467
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
..+|.++..+|++++|++.|++++...|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 78888888999999999999999888775
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.25 E-value=1.4e-10 Score=112.92 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=87.5
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 045024 121 KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLES 200 (1173)
Q Consensus 121 ~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 200 (1173)
.+|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCC
Q 045024 201 GNIFLMLGNFRKGVEQFQLALKISSE 226 (1173)
Q Consensus 201 a~~~~~~g~~~~A~~~~~~al~~~p~ 226 (1173)
|.++...|++++|+..|+++++.+|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888776
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=9e-11 Score=131.28 Aligned_cols=164 Identities=5% Similarity=-0.037 Sum_probs=137.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS------GEALCELLEHGGKESLEVVVCREASDKSPRA------FW 127 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a------~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 127 (1173)
+...+..+.. .|++++|...++++++..+..+.. +..+|.++...|++++|+..+++++...+.. ..
T Consensus 78 l~~~i~~~~~-~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCK-QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4445778888 999999999999999988777652 3458888888999999999999999865432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------h
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRG---Y----PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------I 194 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 194 (1173)
++..+|.+|...|++++|+.+|+++++. . +....++.++|.+|...|++++|+..+++++++.+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 7899999999999999999999999953 1 2235588999999999999999999999999876443 6
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHHhhc
Q 045024 195 FPLLESGNIFLMLGN-FRKGVEQFQLALKIS 224 (1173)
Q Consensus 195 ~a~~~la~~~~~~g~-~~~A~~~~~~al~~~ 224 (1173)
.+++.+|.++..+|+ +++|+..|++++.+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999995 699999999998753
No 155
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=1.3e-10 Score=129.86 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=137.2
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH------H
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV------AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS------V 93 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~------~ 93 (1173)
...+..++..++ +++|...++++++..+..+. .+..+|.++.. .|++++|+.+|+++++..+... .
T Consensus 79 ~~~i~~~~~~~~-y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 79 KDQVIMLCKQKR-YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-KVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344677778887 99999999999998877665 33458999988 9999999999999999654432 3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDK-------SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS------P 160 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~ 160 (1173)
++..+|.+|...|++++|+.+|+++++. .+....+++.+|.+|..+|++++|+..+++++++.+.. +
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6899999999999999999999999852 12235688999999999999999999999999876433 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 045024 161 HLWEALGLAYHRLG-MFSAAIKSYGRAIEL 189 (1173)
Q Consensus 161 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 189 (1173)
.++..+|.+|...| ++++|+..|++++.+
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999999 579999999999875
No 156
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=1.6e-10 Score=127.49 Aligned_cols=186 Identities=13% Similarity=0.039 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 7 LLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNP--QNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 7 Ai~~l~~al~~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|+..|++.+...+.+...++.+|.++...|+ +++|+..+.+.+..+| .+.+++..++.++.. .|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~-~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD-LDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 4667777777766777888899999999987 9999999999998887 889999999999999 99999999999999
Q ss_pred HhhCCC----CHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 045024 85 VSLSPD----DSVSGEAL--CELLEHGG--KESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG- 155 (1173)
Q Consensus 85 l~~~p~----~~~a~~~L--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~- 155 (1173)
.+.+|+ +......+ +.+....| ++.+|...|+++....|+.......+. ++..+|++++|...++.+++.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 999983 22333444 54566666 999999999999998887222222233 899999999999999988776
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Q 045024 156 ---------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPL 197 (1173)
Q Consensus 156 ---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 197 (1173)
+|+++.++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 58899999999999999998 89999999999999998653
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.23 E-value=9.2e-11 Score=114.19 Aligned_cols=98 Identities=22% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..++.+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus 9 ~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3333333333333 333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 045024 137 LHHKKWSEAVQSLQHAIRG 155 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~ 155 (1173)
...|++++|+..|++++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=8.4e-12 Score=149.06 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHH
Q 045024 72 IDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA---------------FWAFRRLGYLQ 136 (1173)
Q Consensus 72 g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~ 136 (1173)
+++++|+..|+++++..|.....+..+|..+...|++++|+..|+++++..|.+ ..++..+|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555544 46666777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGV 214 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 214 (1173)
..+|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777776666654
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.22 E-value=6.6e-11 Score=116.88 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT-------SPH-----LWEALGLAYHRLGMFSAAIKSYGRAIEL---- 189 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 189 (1173)
...+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345667777777778888888888888877777 443 8999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 190 ---DDTSIFPL----LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 190 ---~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999887655444333
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=3.3e-10 Score=106.23 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFL 205 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 205 (1173)
+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCChHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 045024 206 MLGNFRKGVEQFQLALKISSENVSAHYGLASG 237 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 237 (1173)
..|++++|+..|+++++.+|+++.++..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666666655554443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.22 E-value=7.1e-11 Score=113.05 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 55667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhhcCCCH
Q 045024 209 NFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~ 228 (1173)
++++|+..|+++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777766543
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.21 E-value=1e-11 Score=148.38 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHH
Q 045024 39 KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---------------SVSGEALCELLE 103 (1173)
Q Consensus 39 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---------------~~a~~~La~~~~ 103 (1173)
+++|+..|+.++..+|+.+.++..+|..++. .|++++|+..|+++++++|.+ ..++..+|.++.
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888888889999999999999999 999999999999999999998 688999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|.+.
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888754
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=3e-10 Score=106.58 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHhCC
Q 045024 151 HAIRGYP 157 (1173)
Q Consensus 151 ~al~~~p 157 (1173)
++++.+|
T Consensus 97 ~~~~~~~ 103 (118)
T 1elw_A 97 EGLKHEA 103 (118)
T ss_dssp HHHTTCT
T ss_pred HHHHcCC
Confidence 3333333
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.20 E-value=1.9e-10 Score=111.15 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------HHHHHHH
Q 045024 60 FRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------FWAFRRL 132 (1173)
Q Consensus 60 ~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~l 132 (1173)
+..+|..++. .|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..++++++++|++ ..++..+
T Consensus 11 ~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444444 4444444444444444444444444444444444444444444444444333322 1234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYP 157 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p 157 (1173)
|.++...|++++|+..|++++...|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 4445555555555555555544444
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.20 E-value=1.6e-10 Score=120.76 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHcCCHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD------KSPRAFWAFRRLGYLQLHHKKWSE 144 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~g~~~~ 144 (1173)
.|++++|...++......+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555533333222223344455555555555555555555555554 222344566667777777777777
Q ss_pred HHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcCChH
Q 045024 145 AVQSLQHAIRG---YPTS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--S----IFPLLESGNIFLMLGNFR 211 (1173)
Q Consensus 145 A~~~l~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~~ 211 (1173)
|+..+++++.. .+++ ..++..+|.++...|++++|+..++++++..+. + ..++..+|.++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 77777776665 3322 345667777777777777777777777754321 1 234567788888888888
Q ss_pred HHHHHHHHHHhhcC
Q 045024 212 KGVEQFQLALKISS 225 (1173)
Q Consensus 212 ~A~~~~~~al~~~p 225 (1173)
+|+..+++++++..
T Consensus 165 ~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 165 EAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777644
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.19 E-value=1.1e-10 Score=111.73 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKW 142 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 142 (1173)
+|..+.. .|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 23 ~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3333333 333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHhCC
Q 045024 143 SEAVQSLQHAIRGYP 157 (1173)
Q Consensus 143 ~~A~~~l~~al~~~p 157 (1173)
++|+..|+++++.+|
T Consensus 102 ~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 102 NAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhCc
Confidence 333333333333333
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.19 E-value=1.8e-10 Score=116.21 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------------------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAI 187 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 187 (1173)
+..+...|..++..|+|++|+..|++++.. +|.+..++.++|.+|...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445566666666677777777777766666 56667888889999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHH
Q 045024 188 ELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENV-SAHYGLASGLLGLA 242 (1173)
Q Consensus 188 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~l~ 242 (1173)
+++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+.....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999999999988887 45555555544433
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.5e-10 Score=110.50 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 045024 54 PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFR 130 (1173)
Q Consensus 54 p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 130 (1173)
|.++..++.+|..+.. .|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+++.+++
T Consensus 25 ~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3344444444444444 444444444444444444443 333444444444444444444444444444444444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 045024 131 RLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALG 167 (1173)
Q Consensus 131 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 167 (1173)
.+|.++...|++++|+..|++++..+|++..++..++
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4444444444444444444444444444444443333
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=5.6e-10 Score=109.79 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 045024 88 SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWE 164 (1173)
Q Consensus 88 ~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 164 (1173)
+|.+...+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34555566666666666666666666666666666655 555666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 165 ALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 165 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
.+|.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555555443
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=2.1e-10 Score=115.77 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL--------SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWA 128 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~--------~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a 128 (1173)
+..+..+|..++. .|++++|+..|.+++.. +|.++.. ...+|.+..+
T Consensus 11 a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEW------------------------VELDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH------------------------HHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH------------------------HHHHHHHHHH
Confidence 5566777777777 77777777777777766 3333211 1225666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHc
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI-FPLLESGNIFLML 207 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~ 207 (1173)
+..+|.++...|++++|+..+++++.++|+++.+++.+|.+|...|++++|+..|+++++++|++. .+...++.+....
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877 5566666665544
Q ss_pred CC
Q 045024 208 GN 209 (1173)
Q Consensus 208 g~ 209 (1173)
++
T Consensus 146 ~~ 147 (162)
T 3rkv_A 146 AE 147 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=4.4e-10 Score=117.32 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=134.7
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG------YPTSPHLWEALGLAYHRLGMF 176 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~ 176 (1173)
...|++++|...++.+....+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56799999999666655544467899999999999999999999999999983 345577899999999999999
Q ss_pred HHHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045024 177 SAAIKSYGRAIEL---DDTS----IFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLG 249 (1173)
Q Consensus 177 ~~A~~~~~~al~~---~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g 249 (1173)
++|+..++++++. .+++ ..++..+|.++...|++++|+..+++++...+.... ....+.++..+|..+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 9999999999988 4432 467889999999999999999999999986543222 2245666777888888889
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 045024 250 AFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 250 ~~~~A~~~l~~Al~~~~~~~ 269 (1173)
++++|...++++++......
T Consensus 162 ~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999877643
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.4e-09 Score=126.44 Aligned_cols=175 Identities=9% Similarity=-0.068 Sum_probs=129.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHH
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRA------FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP------TSPHL 162 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~ 162 (1173)
+..+|.+|...|++++|++.+.+++...+.. ..+...+|.++...|++++|+..+++++...+ ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4555666666666666666666555443321 12345566677777888888888887776432 23567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELD------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLAS 236 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 236 (1173)
+..+|.+|...|++++|...+++++... +....++..+|.+|...|++++|...+++++...+.........+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 8888999999999999999998887652 2236788899999999999999999999999876655444556778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHh
Q 045024 237 GLLGLAKQCINLGAFRWGASLLEDACKVAEANT 269 (1173)
Q Consensus 237 ~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~ 269 (1173)
++...|..+...+++.+|...+.++++.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 888899999999999999999999998876654
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.14 E-value=2.4e-10 Score=112.85 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..++. .|++++|+..|+++++++|+++.. .++...|.+..+|.++|.++
T Consensus 11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence 4566777888888 888888888888888888874332 01111122334566666666
Q ss_pred HHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Q 045024 137 LHHKKWSEAVQSLQHAIRG-------YPTSPHLW----EALGLAYHRLGMFSAAIKSYGRAIELDDTSIF 195 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 195 (1173)
..+|++++|+..+++++++ +|++..+| +++|.++..+|++++|+..|+++++++|++..
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6666666666666666666 77777777 77777777777777777777777777666543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.14 E-value=7.1e-10 Score=106.53 Aligned_cols=99 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHH
Q 045024 61 RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS---VSGEALCELLEHGGKESLEVVVCREASDKSPRA---FWAFRRLGY 134 (1173)
Q Consensus 61 ~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~ 134 (1173)
+.+|..+.. .|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 6 ~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 334444444 4444444444444444444333 333344444444444444444444444433333 333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
++...|++++|+..|++++...|+++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 44444444444444444444444333
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.13 E-value=1.9e-10 Score=106.96 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT--SIFPLLE 199 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~ 199 (1173)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhhcCCC
Q 045024 200 SGNIFLML-GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 200 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|.++... |++++|++.+++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666666654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=8.5e-10 Score=105.99 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC---HHHHH
Q 045024 23 SLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA---VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---SVSGE 96 (1173)
Q Consensus 23 ~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---~~a~~ 96 (1173)
..++.+|..++..|+ +++|+..|+++++.+|+++ .+++.+|.++.. .|++++|+..|+++++.+|++ +.+++
T Consensus 3 ~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGK-YDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 357889999999998 9999999999999999988 899999999999 999999999999999999999 88899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHK 140 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 140 (1173)
.+|.++...|++++|+..|+++++..|+++.+......+....+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887766665544433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.12 E-value=7.9e-10 Score=105.81 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS-------IFPL 197 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 197 (1173)
.+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 355677777777788888888888888887777777778888888888888888888888887777665 7777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGL 241 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l 241 (1173)
+.+|.++...|++++|+..|+++++..| ++.....++.+...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7888888888888888888888888777 466665555555443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.12 E-value=2e-11 Score=146.43 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=75.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 045024 95 GEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG 174 (1173)
Q Consensus 95 ~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 174 (1173)
+..+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.+|..+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33445555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHcCChHHHHHHHH
Q 045024 175 MFSAAIKSYGRAIELDDTSIFPLLESGNI--FLMLGNFRKGVEQFQ 218 (1173)
Q Consensus 175 ~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~ 218 (1173)
++++|++.|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666666666666655 566666666666666
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=3.9e-10 Score=104.77 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCC--CHHHH
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPD--DSVSG 95 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~--~~~a~ 95 (1173)
+|+++.+++.+|.++...++ +++|+..|+++++.+|.++.++..+|.++.. .|++++|+..|+++++.+|+ +..++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN-YTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 45556666666666666655 6666666666666666666666666666666 66666666666666666666 66666
Q ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHhhCCC
Q 045024 96 EALCELLEHG-GKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 96 ~~La~~~~~~-g~~~~A~~~~~~al~~~p~ 124 (1173)
..+|.++... |++++|+..+++++...|.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 6666666666 6666666666666666554
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=7.1e-10 Score=106.12 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------HHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA-------FWAF 129 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 129 (1173)
+..++.+|.++.. .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|++ +.++
T Consensus 4 ~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3444555555555 5555555555555555555555555555555555555555555555554444433 4444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGL 168 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 168 (1173)
..+|.++...|++++|+..|+++++..| ++.....++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 4444444444444444444444444444 2333333333
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.08 E-value=2.9e-11 Score=145.00 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+.++..+|..+.. .|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|+++.+++.+|.++
T Consensus 6 a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456667788888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA--YHRLGMFSAAIKSYG 184 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 184 (1173)
..+|++++|+..|+++++.+|++..++..++.+ +...|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999899888888 888899999999998
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.06 E-value=1.1e-10 Score=133.50 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 045024 53 NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRL 132 (1173)
Q Consensus 53 ~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 132 (1173)
.+..+..+..+|..++. .|++++|+..|++++...|++.. +...|++.++...+. ..+++.+
T Consensus 175 ~~~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nl 236 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFK-EEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHHHHTCS-SSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHH
Confidence 34456677888888888 88888888888888888776541 223334444443321 1478899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCChH
Q 045024 133 GYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI-FLMLGNFR 211 (1173)
Q Consensus 133 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~ 211 (1173)
|.++..+|++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+ ....+..+
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888 44567778
Q ss_pred HHHHHHHHHHhhcCCCHH
Q 045024 212 KGVEQFQLALKISSENVS 229 (1173)
Q Consensus 212 ~A~~~~~~al~~~p~~~~ 229 (1173)
++...|.+++...|+++.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 888999999998887653
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=1.2e-10 Score=133.27 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=89.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGE 96 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~ 96 (1173)
..|+.+..+..+|..++..++ |++|+..|++++...|++.. +.. .|+++++...+. ..+++
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~--------~~~-~~~~~~~~~~l~---------~~~~~ 234 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEK-LEEAMQQYEMAIAYMGDDFM--------FQL-YGKYQDMALAVK---------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSC-CHHHHHHHHHHHHHSCHHHH--------HTC-CHHHHHHHHHHH---------THHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchh--------hhh-cccHHHHHHHHH---------HHHHH
Confidence 345567789999999999987 99999999999999998652 223 455555544332 13667
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCC
Q 045024 97 ALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLA-YHRLGM 175 (1173)
Q Consensus 97 ~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~ 175 (1173)
.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+ ....+.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777 334566
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 045024 176 FSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 176 ~~~A~~~~~~al~~~p~~~ 194 (1173)
.+++...|.+++...|++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhCCCCCCC
Confidence 6777777777777777654
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=2.4e-09 Score=126.45 Aligned_cols=201 Identities=11% Similarity=0.128 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNA-----------------VAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|...+..|..+...|+ |++|++.|.++++..|... .++..+|.+|.. .|++++|.+.+.++
T Consensus 4 p~~~l~~a~~l~~~~~-y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~-~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQ-YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT-MGAKDKLREFIPHS 81 (434)
T ss_dssp TTHHHHHHHHHHHHTC-HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 4456778888888887 9999999999999888652 468899999999 99999999999999
Q ss_pred HhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 85 VSLSPDDSV------SGEALCELLEHGGKESLEVVVCREASDKSP------RAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 85 l~~~p~~~~------a~~~La~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
++..+.... +...++.++...|++++|+..+++++...+ ....++..+|.++...|+|++|+..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 82 TEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 987655433 356678888889999999999999876532 34678899999999999999999999998
Q ss_pred HHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----hHHHHHHHHHHHHcCChHHHHHHHHH
Q 045024 153 IRG------YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT---S----IFPLLESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 153 l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~----~~a~~~la~~~~~~g~~~~A~~~~~~ 219 (1173)
+.. .+....++..+|.+|...|++++|...+++++...+. . ...+..+|.++...|++++|..+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 875 2334678999999999999999999999999876432 2 34567788999999999999999999
Q ss_pred HHhhc
Q 045024 220 ALKIS 224 (1173)
Q Consensus 220 al~~~ 224 (1173)
+++..
T Consensus 242 a~~~~ 246 (434)
T 4b4t_Q 242 SFESY 246 (434)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.02 E-value=6.1e-10 Score=109.69 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
+++|+..|+++++++|++..+++.+|.+|..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555544
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.02 E-value=5.2e-10 Score=106.10 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 106 GKESLEVVVCREASDK---SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 106 g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445555555555554 3444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCChHH
Q 045024 183 YGRAIELDDTSIFP 196 (1173)
Q Consensus 183 ~~~al~~~p~~~~a 196 (1173)
++++++..|+++..
T Consensus 84 ~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 84 LLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred HHHHHHhCCCcHHH
Confidence 55555555554443
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.00 E-value=9.5e-10 Score=108.34 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 045024 138 HHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM----------FSAAIKSYGRAIELDDTSIFPLLESGNIFLML 207 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 207 (1173)
+.+.+++|+..++++++++|++++++.++|.++...|+ +++|+..|+++++++|++..+++.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 44566777777777777777777777777777777665 56999999999999999999999999999988
Q ss_pred C-----------ChHHHHHHHHHHHhhcCCCHH
Q 045024 208 G-----------NFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 208 g-----------~~~~A~~~~~~al~~~p~~~~ 229 (1173)
| ++++|+.+|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5 899999999999999999864
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.99 E-value=2.3e-09 Score=123.85 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
+..+..+|..+.. .|++++|+..|+++++..|..+ +....+.....+|.+..++..+|.++
T Consensus 223 a~~~~~~g~~~~~-~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFK-SQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999 9999999999999887543321 01113334445666677777788888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVE 215 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 215 (1173)
..+|++++|+..++++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888877777778888777777776654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.99 E-value=2.8e-09 Score=123.22 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 045024 93 VSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHR 172 (1173)
Q Consensus 93 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 172 (1173)
..+..+|..+...|++++|+..|+++++..|..+ .....++....+|.+..++.++|.+|..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667777777777777777777765433221 1111233344778888999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045024 173 LGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGA 250 (1173)
Q Consensus 173 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~ 250 (1173)
.|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++...+...
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886655443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=5e-10 Score=106.19 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSL---SPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQ 147 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~---~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 147 (1173)
.|++++|+..|+++++. +|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666666665 355555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHH
Q 045024 148 SLQHAIRGYPTSPHLW 163 (1173)
Q Consensus 148 ~l~~al~~~p~~~~~~ 163 (1173)
.+++++...|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 6666666666555443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=4.2e-09 Score=104.63 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 045024 57 AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQ 136 (1173)
Q Consensus 57 ~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 136 (1173)
..++..+|.++.. .|++++|+..++++++..+..... +....++..+|.++
T Consensus 9 ~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~ 59 (164)
T 3ro3_A 9 GRAFGNLGNTHYL-LGNFRDAVIAHEQRLLIAKEFGDK----------------------------AAERIAYSNLGNAY 59 (164)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCH----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCCc----------------------------hHHHHHHHHHHHHH
Confidence 3455666666666 666666666666666554321100 00012344455555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHH
Q 045024 137 LHHKKWSEAVQSLQHAIRGYPTS------PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT------SIFPLLESGNIF 204 (1173)
Q Consensus 137 ~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~ 204 (1173)
...|++++|+..+++++...+.. ..++..+|.++...|++++|+..++++++..+. ...++..+|.++
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 55555555555555554433211 334555666666666666666666666554221 134556667777
Q ss_pred HHcCChHHHHHHHHHHHhhcC
Q 045024 205 LMLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 205 ~~~g~~~~A~~~~~~al~~~p 225 (1173)
...|++++|+..++++++...
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777777777777777666543
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.96 E-value=3.5e-09 Score=105.20 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC----
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQN------AVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD---- 91 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~---- 91 (1173)
..++..+|.++...++ +++|+..++++++..+.. ..++..+|.++.. .|++++|+..++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 5678999999999987 999999999999875532 2478889999999 999999999999998765432
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045024 92 --SVSGEALCELLEHGGKESLEVVVCREASDKSPR------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIR 154 (1173)
Q Consensus 92 --~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~l~~al~ 154 (1173)
..++..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|+..++++++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 234556666666666666666666665544211 123344444444444444444444444443
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.3e-09 Score=97.28 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=73.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTS------IFPLL 198 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~ 198 (1173)
++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888888888888888877 77777
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 045024 199 ESGNIFLMLGNFRKGVEQFQL 219 (1173)
Q Consensus 199 ~la~~~~~~g~~~~A~~~~~~ 219 (1173)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888777777776665544
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.77 E-value=8.2e-08 Score=90.24 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 144 EAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 144 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777788778888888888888888888888888888888887778888888888888888888888888777
Q ss_pred cCC
Q 045024 224 SSE 226 (1173)
Q Consensus 224 ~p~ 226 (1173)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.75 E-value=3.7e-08 Score=92.62 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 110 LEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 110 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q 045024 190 DD 191 (1173)
Q Consensus 190 ~p 191 (1173)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 55
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.72 E-value=9.4e-08 Score=85.07 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 045024 125 AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIF 204 (1173)
Q Consensus 125 ~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 204 (1173)
++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHc
Q 045024 205 LML 207 (1173)
Q Consensus 205 ~~~ 207 (1173)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=8.8e-09 Score=95.73 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC------HHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD------SVSG 95 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~------~~a~ 95 (1173)
+..++.+|.+++..|+ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++++|++ ..++
T Consensus 4 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGL-YREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4556666666666655 6666666666666666666666666666666 666666666666666666666 5555
Q ss_pred HHHHHHHHHCCCHHHHHHHH
Q 045024 96 EALCELLEHGGKESLEVVVC 115 (1173)
Q Consensus 96 ~~La~~~~~~g~~~~A~~~~ 115 (1173)
..+|.++...|+++.|+..+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 66666665555555554443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.68 E-value=1.1e-07 Score=84.59 Aligned_cols=82 Identities=27% Similarity=0.445 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCE 100 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~ 100 (1173)
++.+++.+|.++...++ +++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555655555554 5666666666665566555556666666665 666666666666666655555555555555
Q ss_pred HHHH
Q 045024 101 LLEH 104 (1173)
Q Consensus 101 ~~~~ 104 (1173)
++..
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=2.6e-06 Score=91.47 Aligned_cols=84 Identities=21% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-hhHHHHhHHHHHHh-cCCHHH
Q 045024 401 GLKQHALIRGLQLDVS--LADAWAHIGKLYGEV-----GEKKLARQAFDSARSIDPSL-ALPWAGMSADVQAS-ESLVDD 471 (1173)
Q Consensus 401 ~~a~~a~~kal~l~p~--~~~a~~~Lg~~y~~~-----g~~e~A~~~f~~al~~~P~~-~~a~~~l~a~~~~~-~g~~~e 471 (1173)
+.+...++++++++|+ +..+|..+|.+|... |+.++|.+.|+++++++|+. ..+++. .+..+.. .|++++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~-YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT-YADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH-HHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH-HHHHHHHhcCCHHH
Confidence 4566789999999999 677999999999995 99999999999999999975 888888 5656666 599999
Q ss_pred HHHHHHHHHhcCCc
Q 045024 472 AFESCLRAVQILPL 485 (1173)
Q Consensus 472 A~~~~~~al~~~p~ 485 (1173)
|...+++++...|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999886
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.56 E-value=2.1e-07 Score=85.26 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 045024 122 SPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL 189 (1173)
Q Consensus 122 ~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 189 (1173)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|++++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444444444445555555555444444444444444455554455555555544444444
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.56 E-value=1.2e-07 Score=86.25 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 045024 130 RRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPH-LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLG 208 (1173)
Q Consensus 130 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 208 (1173)
+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777777788888888887777777777 77777888877888888888888888877777766533 4
Q ss_pred ChHHHHHHHHHHHhhcCCCH
Q 045024 209 NFRKGVEQFQLALKISSENV 228 (1173)
Q Consensus 209 ~~~~A~~~~~~al~~~p~~~ 228 (1173)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56667777777766666543
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.54 E-value=5.4e-07 Score=82.44 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=67.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 155 GYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 155 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987654
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.54 E-value=3.5e-06 Score=90.44 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 045024 40 EKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFS--------------------IDTQRAIKCYQRAVSLSPDDSVSGEALC 99 (1173)
Q Consensus 40 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------------------g~~~eA~~~~~~al~~~p~~~~a~~~La 99 (1173)
.-.+..++-.+..+|++.......|..|..+. .++.+|.+.|.++.+. .+-
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y---------~~r 119 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY---------ALS 119 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH---------HHH
Confidence 34455666667778888766655555554421 1233455555554431 111
Q ss_pred HHHHHCCCHHHHHHH-----HHH-HHhhCCCcHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CH
Q 045024 100 ELLEHGGKESLEVVV-----CRE-ASDKSPRAFWAFRRLGYLQLH-----HK------KWSEAVQSLQHAIRGYPT--SP 160 (1173)
Q Consensus 100 ~~~~~~g~~~~A~~~-----~~~-al~~~p~~~~a~~~la~~~~~-----~g------~~~~A~~~l~~al~~~p~--~~ 160 (1173)
-+......+.+++.. +.. +.+.+|+++++++..|.+... .| ....|...++++++++|+ +.
T Consensus 120 aL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 120 SLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp HHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 111222223222221 222 344567788877777666543 13 357899999999999998 67
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhcCCC
Q 045024 161 HLWEALGLAYHRL-----GMFSAAIKSYGRAIELDDTS-IFPLLESGNIFLML-GNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 161 ~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 227 (1173)
.+|..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+... |++++|..++++++..+|..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7999999999995 99999999999999999975 99999999999884 99999999999999987764
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.52 E-value=1.3e-06 Score=85.20 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=22.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Q 045024 63 LGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH----GGKESLEVVVCREAS 119 (1173)
Q Consensus 63 lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~----~g~~~~A~~~~~~al 119 (1173)
+|.+|.. .+..++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+..|+++.
T Consensus 31 lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 4444444 44444444444444433 333444444444433 334444444444433
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=2e-06 Score=83.90 Aligned_cols=121 Identities=18% Similarity=0.051 Sum_probs=97.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 045024 71 SIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLH----HKKWSEAV 146 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~ 146 (1173)
.+++++|+.+|+++.+..... +. +|.+|...+..++|+..|+++.+. .++.+.+.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 356888999999988876433 33 888888888888899999998876 678888899999988 88999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 045024 147 QSLQHAIRGYPTSPHLWEALGLAYHR----LGMFSAAIKSYGRAIELDDTSIFPLLESG 201 (1173)
Q Consensus 147 ~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 201 (1173)
..|+++.+. .++.+.+.+|.+|.. .+++++|+..|+++.+. .++.+...++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999998876 678888999999988 88999999999998886 3455555554
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.49 E-value=1.7e-06 Score=97.05 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=57.1
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 119 SDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 119 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
+..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3556777777777777777778888888888888888764 66677778888888888888888888888887654
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.47 E-value=2.6e-07 Score=84.02 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 045024 26 LDLGLHLWENSESKEKAAEHFVIAAKLNPQNAV-AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEH 104 (1173)
Q Consensus 26 ~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~ 104 (1173)
+.+|..++..++ +++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGD-IENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTC-HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 456666666665 77777777777777777776 77777777777 777777777777777777776665432
Q ss_pred CCCHHHHHHHHHHHHhhCCC
Q 045024 105 GGKESLEVVVCREASDKSPR 124 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~ 124 (1173)
+.+.+++..|+++...+|+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 3445555555555555443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.42 E-value=3.7e-06 Score=94.22 Aligned_cols=155 Identities=13% Similarity=0.156 Sum_probs=104.9
Q ss_pred HHHhCCCCHHHH--HHHHHHHHHccCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 045024 49 AAKLNPQNAVAF--RYLGHYYTRFSID---TQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSP 123 (1173)
Q Consensus 49 al~~~p~~~~a~--~~lg~~~~~~~g~---~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p 123 (1173)
+....|.++.+| +..|..+.. .++ ..+|+.+|+++++++|++..++-.++.+|... ....|
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~-~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~ 251 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLL-HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHP 251 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSC
T ss_pred HhccCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCC
Confidence 334455554433 445555554 443 35677777777777777776666666655410 00111
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 045024 124 RAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNI 203 (1173)
Q Consensus 124 ~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 203 (1173)
....... ....+... ..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.+
T Consensus 252 ~~~~~~~----------~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 252 LDEKQLA----------ALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp CCHHHHH----------HHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred CchhhHH----------HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 1111000 01122221 1234667999999999999999999999999999999999974 7788899999
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCHH
Q 045024 204 FLMLGNFRKGVEQFQLALKISSENVS 229 (1173)
Q Consensus 204 ~~~~g~~~~A~~~~~~al~~~p~~~~ 229 (1173)
+...|++++|++.|++++.++|..+.
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999999998753
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=3.1e-06 Score=100.63 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRG-----YPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTS 193 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~ 193 (1173)
.++..+|.+|..+|+|++|+.++++++.+ .|++ ...+.++|.+|..+|++++|+..|++++++ .|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555555555555555555555542 2233 334556666666666666666666666653 3444
Q ss_pred h---HHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 194 I---FPLLESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 194 ~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
+ .....++.++..+|.+++|...|.++.+..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334456666666677777777766665543
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.33 E-value=1.4e-06 Score=103.66 Aligned_cols=117 Identities=12% Similarity=0.023 Sum_probs=55.9
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHH
Q 045024 138 HHKKWSEAVQSLQHAIRG-----YPTS---PHLWEALGLAYHRLGMFSAAIKSYGRAIEL-----DDTS---IFPLLESG 201 (1173)
Q Consensus 138 ~~g~~~~A~~~l~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~la 201 (1173)
.+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+..+++++++ .|++ ...+.++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445555555555555542 2222 234445555555555555555555555543 2222 23344555
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-----cCCCHH---HHHHHHHHHHHHHHHHHHhhcHHHH
Q 045024 202 NIFLMLGNFRKGVEQFQLALKI-----SSENVS---AHYGLASGLLGLAKQCINLGAFRWG 254 (1173)
Q Consensus 202 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---a~~~la~~~~~l~~~~~a~g~~~~A 254 (1173)
.+|..+|++++|+..|++++++ .|+++. ....++.++..++....+...+..+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 233332 2234444555555544444444444
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.20 E-value=7.4e-06 Score=73.62 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCH
Q 045024 18 NPDDPSLHLDLGLHLWENSES--KEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDS 92 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~ 92 (1173)
+|+++..+..+|.+++..++. .++|...|+++++.+|+++.+++.+|..++. .|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 677888888888887655442 4788888888888888888888888888888 8888888888888888877743
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.18 E-value=9.2e-05 Score=88.60 Aligned_cols=162 Identities=12% Similarity=-0.035 Sum_probs=113.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHhC-CCCHHHHHHH
Q 045024 459 SADVQASESLVDDAFESCLRAVQI--LPLAEFQIGLAKLAKLSGHL-------SSSQVFGAIQQAIQRG-PHYPESHNLY 528 (1173)
Q Consensus 459 ~a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~la~l~~~~g~~-------~~~~A~~~l~~al~~~-P~~~~a~~~l 528 (1173)
....+.+.|+.++|+++|+++.+. .|+...+..+-..+...+.. ..++|...|+++.... +-+..++..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334555555555555555555543 23333333332222222211 1245677777776653 2377889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHH
Q 045024 529 GLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD-AEVLQVYAF 607 (1173)
Q Consensus 529 g~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~-~~~~~~la~ 607 (1173)
...+.+.|++++|.++|++..+. ...| ...+|..+...|.+.|+.++|.+.|+++.+.+..+ ...+..+..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~-g~~P-------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAF-GIQP-------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHT-TCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCC-------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999987432 1112 24578899999999999999999999999887654 567888999
Q ss_pred HHHHcCChHHHHHHHHHHhhh
Q 045024 608 SLWQLGKYDLALSMARNLASS 628 (1173)
Q Consensus 608 a~~~~g~~~eA~~~~~~aL~~ 628 (1173)
+|.+.|+.++|.++|+++.+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=1.2e-05 Score=72.16 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC
Q 045024 156 YPTSPHLWEALGLAYHRLGM---FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSEN 227 (1173)
Q Consensus 156 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 227 (1173)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56777777777777765555 5777777777777777777777777777777777777777777777777763
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=3.7e-05 Score=74.74 Aligned_cols=91 Identities=10% Similarity=-0.060 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCChHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLG---MFSAAIKSYGRAIELD-D-TSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ++.+.++.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345666777777777778888888888888877 5668888888888877 6 4577888888888888888888888
Q ss_pred HHHHHhhcCCCHHHHH
Q 045024 217 FQLALKISSENVSAHY 232 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~~ 232 (1173)
++++++.+|++..+..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 8888888888876653
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.01 E-value=2.7e-05 Score=90.97 Aligned_cols=96 Identities=6% Similarity=-0.061 Sum_probs=82.1
Q ss_pred HcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHH
Q 045024 534 ARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE---VLQVY 605 (1173)
Q Consensus 534 ~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~---~~~~l 605 (1173)
..|+|++|+..|++++++.+..-+. ..+..+.++.+||.+|..+|+|++|+.+++++++. +|+++. .+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4689999999999999876654221 25778899999999999999999999999999865 677765 66899
Q ss_pred HHHHHHcCChHHHHHHHHHHhhhcc
Q 045024 606 AFSLWQLGKYDLALSMARNLASSVS 630 (1173)
Q Consensus 606 a~a~~~~g~~~eA~~~~~~aL~~~p 630 (1173)
|.+|..+|++++|+.+|+++++...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=4.7e-05 Score=74.03 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGG---KESLEVVVCREASDKS-P-RAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.+.+.|.+.++.+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ++.+.++.+|..+++.|+|++|.++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444444444444444445555555554444 3334555555444444 3 234444445555555555555555555
Q ss_pred HHHHhCCCCHHHH
Q 045024 151 HAIRGYPTSPHLW 163 (1173)
Q Consensus 151 ~al~~~p~~~~~~ 163 (1173)
++++.+|++..+.
T Consensus 96 ~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 96 GLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHCTTCHHHH
T ss_pred HHHhcCCCCHHHH
Confidence 5555555444443
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.97 E-value=0.00076 Score=80.63 Aligned_cols=164 Identities=10% Similarity=-0.035 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhhCC-CcHH
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-PDDSVSGEALCELLEHGGK---------ESLEVVVCREASDKSP-RAFW 127 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-p~~~~a~~~La~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~ 127 (1173)
.+..+-..+.+ .|+.++|+..|+++.+.. +-+..++..+..++...+. .++|.++|+++....- .+..
T Consensus 28 ~l~~~id~c~k-~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSK-KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTT-SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34555677778 899999999999888754 2345667777766655443 6889999998876532 3677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Q 045024 128 AFRRLGYLQLHHKKWSEAVQSLQHAIRGY-PTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD-TSIFPLLESGNIFL 205 (1173)
Q Consensus 128 a~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~ 205 (1173)
+|..+...+.+.|++++|..+|+++.+.. +-+...|..+...|.+.|+.++|.+.|++..+..- .+...+..+...+.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999999988753 23678899999999999999999999999887642 36778899999999
Q ss_pred HcCChHHHHHHHHHHHhh
Q 045024 206 MLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 206 ~~g~~~~A~~~~~~al~~ 223 (1173)
+.|+.++|.++|+++.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.80 E-value=0.00015 Score=84.89 Aligned_cols=107 Identities=7% Similarity=-0.123 Sum_probs=85.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHH---HH
Q 045024 531 VCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ-----GMLDAE---VL 602 (1173)
Q Consensus 531 i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~-----~p~~~~---~~ 602 (1173)
-+...|++++|+..|+++++..+..-+ +..+..+.++.++|.+|..+|+|++|+..++++++. +|+++. .+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg-~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLP-DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCC-TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCC-ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 355789999999999999765443321 125778899999999999999999999999999865 667665 66
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhhccccccchhh
Q 045024 603 QVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAA 638 (1173)
Q Consensus 603 ~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~ 638 (1173)
.++|.+|..+|++++|+.+|+++++.....-....|
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 889999999999999999999998865433333333
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.75 E-value=0.0002 Score=65.69 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH
Q 045024 22 PSLHLDLGLHLWENSESKEKAAEHFVIAAKLN-------PQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS 94 (1173)
Q Consensus 22 ~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a 94 (1173)
+.-.+.+|..++..++ |..|+..|+++++.. +..+.++..+|.++.+ .|++++|+..++++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~-y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEAD-YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccc-hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4456677777777776 777777777777542 2345667777777777 777777777777777777777666
Q ss_pred HHHHH
Q 045024 95 GEALC 99 (1173)
Q Consensus 95 ~~~La 99 (1173)
...++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 55554
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.74 E-value=0.00028 Score=64.69 Aligned_cols=76 Identities=13% Similarity=-0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELD-------DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHY 232 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 232 (1173)
+.-.+.+|..++..|+|..|+..|+++++.. +....++..+|.++.++|++++|+..++++++.+|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445566666666666666666666666542 223556666777777777777777777777777777665554
Q ss_pred HHH
Q 045024 233 GLA 235 (1173)
Q Consensus 233 ~la 235 (1173)
++.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.68 E-value=0.00023 Score=83.11 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 045024 520 HYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ----- 594 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~----- 594 (1173)
+...++.++|.+|..+|+|++|+.+|++++.+.+..-+. ..|..+..+++||.+|..+|++++|+..|++++++
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 344577899999999999999999999999887754221 26788999999999999999999999999999765
Q ss_pred CCCCHHHH
Q 045024 595 GMLDAEVL 602 (1173)
Q Consensus 595 ~p~~~~~~ 602 (1173)
+|+++.+.
T Consensus 417 G~~Hp~~~ 424 (433)
T 3qww_A 417 GKDHPYIS 424 (433)
T ss_dssp CTTCHHHH
T ss_pred CCCChHHH
Confidence 78887654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.00021 Score=83.57 Aligned_cols=124 Identities=12% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCChh---HHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045024 425 GKLYGEVGEKKLARQAFDSARSI-----DPSLAL---PWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLA 496 (1173)
Q Consensus 425 g~~y~~~g~~e~A~~~f~~al~~-----~P~~~~---a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~ 496 (1173)
..-+...|++++|+..|++++++ .|+++. .+.+ ++.+|..+|++++|+.++++++.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~-L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDC-AMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 33455789999999999999975 456644 3444 677999999999999999987764
Q ss_pred HHhCCCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 045024 497 KLSGHLSSSQVFGAIQQAIQ-RGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSL 575 (1173)
Q Consensus 497 ~~~g~~~~~~A~~~l~~al~-~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~ 575 (1173)
+++.+. .+|+....++++|.+|..+|++++|+.+|++|+++.+..-+. +.|....++.+|+.+.
T Consensus 359 --------------~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~-~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 359 --------------YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR-EHSLIEDLILLLEECD 423 (429)
T ss_dssp --------------HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-TSHHHHHHHHHHHHHH
T ss_pred --------------HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHH
Confidence 222221 134455678999999999999999999999999988765322 1466777778888776
Q ss_pred Hhc
Q 045024 576 SRA 578 (1173)
Q Consensus 576 ~~~ 578 (1173)
..+
T Consensus 424 ~e~ 426 (429)
T 3qwp_A 424 ANI 426 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.25 E-value=0.0026 Score=59.43 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 76 RAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESL---EVVVCREASDKS-P-RAFWAFRRLGYLQLHHKKWSEAVQSLQ 150 (1173)
Q Consensus 76 eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~l~ 150 (1173)
.+...|.+.+..++.+..+.+.+|..+.+..+... ++..++..++.+ | ..-+..+.+|..+++.|+|++|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444555555555555555444333 555555554443 2 234445555555555555555555555
Q ss_pred HHHHhCCCCHHHHH
Q 045024 151 HAIRGYPTSPHLWE 164 (1173)
Q Consensus 151 ~al~~~p~~~~~~~ 164 (1173)
..++..|++..+..
T Consensus 99 ~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 99 GLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCCCCHHHHH
Confidence 55555555544433
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.25 E-value=0.0026 Score=59.50 Aligned_cols=90 Identities=10% Similarity=-0.050 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCChHHHHHH
Q 045024 142 WSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSA---AIKSYGRAIELD-D-TSIFPLLESGNIFLMLGNFRKGVEQ 216 (1173)
Q Consensus 142 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~A~~~ 216 (1173)
...+...|.+....++.+..+.+.+|.++.+..+... ++..++..+..+ | ...+.++.+|..++++|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666666666777777777777777776665 777777777665 3 3556777788888888888888888
Q ss_pred HHHHHhhcCCCHHHH
Q 045024 217 FQLALKISSENVSAH 231 (1173)
Q Consensus 217 ~~~al~~~p~~~~a~ 231 (1173)
++.+++..|++..+.
T Consensus 97 ~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHCTTCHHHH
T ss_pred HHHHHHhCCCCHHHH
Confidence 888888888877665
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.23 E-value=0.0054 Score=58.45 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=72.1
Q ss_pred hCCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 87 LSPDDSVSGEALCELLEHGGKE------SLEVVVCREASDKSPR--------AFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 87 ~~p~~~~a~~~La~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
+.|++++.|..........|+. ++-++.|++++..-|. ....|...+.. ...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3466666666666666555666 5666666666555443 13344455543 4557788888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 153 IRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 153 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
+......+.+|...|....++|+.+.|.+.+.+++.+.|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 77776677778888888888888888888888888877765443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.92 E-value=0.0078 Score=57.39 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=56.6
Q ss_pred hCCCCHHHHHHHHHHHHHccCcH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCCHHHHHHHHH
Q 045024 17 ANPDDPSLHLDLGLHLWENSESK------EKAAEHFVIAAKLNPQN--------AVAFRYLGHYYTRFSIDTQRAIKCYQ 82 (1173)
Q Consensus 17 ~~P~~~~~~~~lg~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~a~~~lg~~~~~~~g~~~eA~~~~~ 82 (1173)
..|++++.|+......-..|+ + ++-++.|++++..-|.. ...|...+.. .. .+|.++|...|+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~-p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~ 84 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSV-PLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQ 84 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTC-SCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHH
Confidence 456666666666665555544 4 55556666666444331 2334444433 34 455556666666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 045024 83 RAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASDKSPRA 125 (1173)
Q Consensus 83 ~al~~~p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (1173)
.++.+......+|...|..-.++|+...|...+.+++...|..
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 6555554555555555555555555555555555555555544
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.59 E-value=0.0071 Score=59.04 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Q 045024 523 ESHNLYGLVCEARSDYQAAVVSYRLARYAISSSS 556 (1173)
Q Consensus 523 ~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~p 556 (1173)
.++..+|+.++..|+|..|...|++|+......+
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999999988766543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.33 E-value=0.043 Score=53.55 Aligned_cols=121 Identities=12% Similarity=-0.048 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 045024 522 PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ------G 595 (1173)
Q Consensus 522 ~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~------~ 595 (1173)
-.++..-..-+...|.|+.|+-....++.+.+.+++.........++..+|.++...|+|..|...|++++.. .
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3355666777888999999999999998887766653333455678899999999999999999999997543 1
Q ss_pred C-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchhhhhHHHHHHHH
Q 045024 596 M-------------------LDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLL 648 (1173)
Q Consensus 596 p-------------------~~~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~~~~~~~la~l~ 648 (1173)
+ .+.+..+.++.+|.+.|++++|+..++.+=. ....|.+-..||+++
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~------k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS------RQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG------GGCCHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc------hhcCHHHHHHHHHHh
Confidence 1 1125678899999999999999988876522 124456666666654
No 229
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.19 E-value=0.38 Score=54.62 Aligned_cols=180 Identities=10% Similarity=0.035 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHH----HHHh-cCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSAD----VQAS-ESLVDDAFESCLRAVQILPLAEFQIGLA 493 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~----~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~la 493 (1173)
.+.+.||.+|.+.|++++-.+.+......-+..+.+....+.. .+.. .+..+.-++++..+++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~------------ 87 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIE------------ 87 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------
Confidence 4678899999999999999988887655544444443322111 1111 1111111111111111
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHH
Q 045024 494 KLAKLSGHLSSSQVFGAIQQAIQRGPHYPE--SHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINL 571 (1173)
Q Consensus 494 ~l~~~~g~~~~~~A~~~l~~al~~~P~~~~--a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~L 571 (1173)
-+-......-. .-..+|.+|...|+|.+|.+.+.+.++-+.... .......++..-
T Consensus 88 -------------------~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d---d~~~llev~lle 145 (394)
T 3txn_A 88 -------------------WAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD---DKNLLVEVQLLE 145 (394)
T ss_dssp -------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS---CTHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchhHHHHHHHH
Confidence 11111011111 224789999999999999999999876655422 245677888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCCHH----HHHHHHHHHH-HcCChHHHHHHHHHHhhhcccc
Q 045024 572 ARSLSRAGNALDAVRECESLERQG---MLDAE----VLQVYAFSLW-QLGKYDLALSMARNLASSVSAM 632 (1173)
Q Consensus 572 a~~~~~~g~~~eAi~~~~~~~~~~---p~~~~----~~~~la~a~~-~~g~~~eA~~~~~~aL~~~p~~ 632 (1173)
.++|...|++.++...+.++.... +.+|. ....-|..+. ..++|.+|...|-++.+..++.
T Consensus 146 ~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 146 SKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc
Confidence 999999999999999999886442 12332 3355788888 8999999999999888755543
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.76 E-value=0.17 Score=47.95 Aligned_cols=72 Identities=7% Similarity=-0.079 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHH
Q 045024 160 PHLWEALGLAYHRLGMFS---AAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAH 231 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 231 (1173)
+.+.+.+|.++.+..+.+ +++..++..+...|. ..+.++.+|..++++|+|++|..+.+.+++..|+|..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 444444444444433322 344444444444442 234444445555555555555555555555555544433
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.71 E-value=0.24 Score=46.94 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Q 045024 123 PRAFWAFRRLGYLQLHHKKW---SEAVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLL 198 (1173)
Q Consensus 123 p~~~~a~~~la~~~~~~g~~---~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 198 (1173)
.-.+.+.+.+|.++.+..+. .+++..++..++..| ..-+.++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688999999999988765 579999999999988 46778999999999999999999999999999999987765
Q ss_pred HHHHH
Q 045024 199 ESGNI 203 (1173)
Q Consensus 199 ~la~~ 203 (1173)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.35 E-value=0.15 Score=47.80 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Q 045024 145 AVQSLQHAIRGYP-TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFP 196 (1173)
Q Consensus 145 A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 196 (1173)
++..++..++.+| ..-+.++.+|..+.+.|+|++|.++.+.+++..|++..+
T Consensus 62 GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 62 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3444444444333 223334444444444444444444444444444444333
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.32 E-value=0.17 Score=47.33 Aligned_cols=77 Identities=6% Similarity=-0.107 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHH
Q 045024 158 TSPHLWEALGLAYHRLGMF---SAAIKSYGRAIELDDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYG 233 (1173)
Q Consensus 158 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 233 (1173)
-.+.+.+.+|.++.+..+. ..++..++..++.+|. ..+.++.+|..+.++|+|++|..+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578889999999987765 4689999999998884 57889999999999999999999999999999999887643
Q ss_pred H
Q 045024 234 L 234 (1173)
Q Consensus 234 l 234 (1173)
.
T Consensus 118 k 118 (134)
T 3o48_A 118 K 118 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.01 E-value=2 Score=41.46 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhh----------
Q 045024 18 NPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSL---------- 87 (1173)
Q Consensus 18 ~P~~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~---------- 87 (1173)
-|..++....++..++-.|+ |..++-.+.+ -+...+.+....+|.. .+++..|+..++..++-
T Consensus 29 ~~~~~eY~lL~~I~LyyngE-Y~R~Lf~L~~-----lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGE-YTRALFHLHK-----LNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp C----CTHHHHHHHHHHTTC-HHHHHHHHHT-----CCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred ccCChHHHhhhhhhhhhcch-HhHHHHHHHh-----cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCccccc
Confidence 45556667778888888887 8888776553 4557778888889999 99999999999998832
Q ss_pred -------CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 045024 88 -------SPDDSVS-GEALCELLEHGGKESLEVVVCREASDKSPRAF 126 (1173)
Q Consensus 88 -------~p~~~~a-~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (1173)
+|.+.+. +..+|.++...|+.++|+.++.......|-.+
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~ 148 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS 148 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence 2333333 56677788888888888888888777776543
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.62 E-value=0.84 Score=51.79 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCc--H--H-
Q 045024 59 AFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVS-----GEALCELLEH-GGKESLEVVVCREASDKSPRA--F--W- 127 (1173)
Q Consensus 59 a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a-----~~~La~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~- 127 (1173)
+.+.+|..|.. .|++++-.+.+......-+.-+.+ ...+-..+.. .+..+.-++.+..+++-..+. . .
T Consensus 21 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQ-EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777 777777666666554333222222 1222222222 233444455555554432111 1 1
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh---
Q 045024 128 -AFRRLGYLQLHHKKWSEAVQSLQHAIRGYP--TS----PHLWEALGLAYHRLGMFSAAIKSYGRAIELD---DTSI--- 194 (1173)
Q Consensus 128 -a~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~--- 194 (1173)
.-..+|..|+..|+|.+|...+.+..+.-. ++ .+.+..-..+|...|++.++...+.++.... +.++
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 223789999999999999999988876322 11 4566677888999999999999999987643 1222
Q ss_pred -HHHHHHHHHHH-HcCChHHHHHHHHHHHhhcC
Q 045024 195 -FPLLESGNIFL-MLGNFRKGVEQFQLALKISS 225 (1173)
Q Consensus 195 -~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p 225 (1173)
.....-|.++. ..++|.+|...|-++++...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 33445678888 89999999999988876443
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.42 Score=58.87 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=72.4
Q ss_pred CCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 045024 105 GGK-ESLEVVVCREASDKSPRAFWAFRRLGYLQL--H-HKKWSEAVQSLQHAIRG--------YPTS----------PHL 162 (1173)
Q Consensus 105 ~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~-~g~~~~A~~~l~~al~~--------~p~~----------~~~ 162 (1173)
.|+ ++.|+..+++....+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 4667777777777766543222 1222111 1 12334566666555531 2222 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 163 WEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 163 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
+..-+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445667777888888888888888888888888888888888888888888766654
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.40 E-value=6 Score=38.25 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=74.2
Q ss_pred cCCCHHHHHHHHHhhcccHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h-------------
Q 045024 383 EGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADAWAHIGKLYGEVGEKKLARQAFDSARS--I------------- 447 (1173)
Q Consensus 383 ~p~~~~~~~~Lg~~~~~~~~a~~a~~kal~l~p~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~--~------------- 447 (1173)
-|..++.-..++.+++-.++.-+++--...++ ...+.+.-..+|.+.+++..|+..++..+. +
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN--T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLN--TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHTCC--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccee
Confidence 34444555566666655555545544444443 577778889999999999999999999993 2
Q ss_pred --CCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 045024 448 --DPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPL 485 (1173)
Q Consensus 448 --~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~ 485 (1173)
+|.+.+......|.++.+.|+.+||+..|.......|.
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 46666777777888999999999999999999998884
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.32 Score=59.98 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=82.4
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHhh--------CCCc----------HHH
Q 045024 71 SID-TQRAIKCYQRAVSLSPDDSVSGEALCELLE--HG-GKESLEVVVCREASDK--------SPRA----------FWA 128 (1173)
Q Consensus 71 ~g~-~~eA~~~~~~al~~~p~~~~a~~~La~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~a 128 (1173)
.|+ ++.|+..|++..+.+|..... +..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 577999999988888865432 22222222 22 2344566666666532 2222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 129 FRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRA 186 (1173)
Q Consensus 129 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 186 (1173)
+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5556777788999999999999999999999999999999999999999999776654
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.62 E-value=0.64 Score=58.38 Aligned_cols=102 Identities=7% Similarity=-0.081 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--cCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAIS--SSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~--~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~ 598 (1173)
....++.+...+.+.|+.++|.++|+...+... ..| ...+|+.+...|++.|+.++|.+.|+++.+.+..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 455788999999999999999999987643322 112 24589999999999999999999999999887654
Q ss_pred -HHHHHHHHHHHHHcCCh-HHHHHHHHHHhhhc
Q 045024 599 -AEVLQVYAFSLWQLGKY-DLALSMARNLASSV 629 (1173)
Q Consensus 599 -~~~~~~la~a~~~~g~~-~eA~~~~~~aL~~~ 629 (1173)
..++..+-..+.+.|+. ++|.++|+++.+..
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 55777778889999985 78899999987643
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.00 E-value=3.4 Score=51.91 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred HccCcHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 045024 34 ENSESKEKAAE-HFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEV 112 (1173)
Q Consensus 34 ~~~~~~~~A~~-~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g~~~~A~ 112 (1173)
..++ +++|.. .+.. -| +......+...+.. .|.+++|+...+ ++...+ .+....|++++|.
T Consensus 611 ~~~~-~~~a~~~~l~~----i~-~~~~~~~~~~~l~~-~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 611 LRGE-IEEAIENVLPN----VE-GKDSLTKIARFLEG-QEYYEEALNISP--------DQDQKF---ELALKVGQLTLAR 672 (814)
T ss_dssp HTTC-HHHHHHHTGGG----CC-CHHHHHHHHHHHHH-TTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHH
T ss_pred HhCC-HHHHHHHHHhc----CC-chHHHHHHHHHHHh-CCChHHheecCC--------Ccchhe---ehhhhcCCHHHHH
Confidence 3454 788766 4311 11 02223566667777 888888876542 233222 3456788999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 113 VVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHA 152 (1173)
Q Consensus 113 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~a 152 (1173)
+..+. .+++..|..+|..+...++++.|+.+|.++
T Consensus 673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87543 356788999999999999999999999876
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.80 E-value=4 Score=51.17 Aligned_cols=74 Identities=11% Similarity=-0.106 Sum_probs=52.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 045024 27 DLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGG 106 (1173)
Q Consensus 27 ~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~~~~g 106 (1173)
.....+...+. +++|++..+ ++... -..... .|++++|.+..+. .++...|..+|..+.+.|
T Consensus 634 ~~~~~l~~~~~-~~~a~~~~~--------~~~~~---f~~~l~-~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 634 KIARFLEGQEY-YEEALNISP--------DQDQK---FELALK-VGQLTLARDLLTD-----ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHTTC-HHHHHHHCC--------CHHHH---HHHHHH-HTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCC-hHHheecCC--------Ccchh---eehhhh-cCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcC
Confidence 33444444444 677765442 23222 234567 8999999987543 467889999999999999
Q ss_pred CHHHHHHHHHHH
Q 045024 107 KESLEVVVCREA 118 (1173)
Q Consensus 107 ~~~~A~~~~~~a 118 (1173)
+++.|+.+|.++
T Consensus 696 ~~~~A~~~y~~~ 707 (814)
T 3mkq_A 696 NFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 999999999876
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.73 E-value=3.9 Score=40.45 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 045024 21 DPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRA 84 (1173)
Q Consensus 21 ~~~~~~~lg~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~a 84 (1173)
|++..|.++. +.|+ ++.|.+..+.. ++...|..+|..... .|+++-|..+|+++
T Consensus 7 D~~~rF~LAL---~lg~-l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLAL---EYGN-LDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHH---HTTC-HHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred ChHHHHHHHH---hcCC-HHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence 4455555553 4444 66666655443 445666666666666 66666666666654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.66 E-value=11 Score=43.77 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----ChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hcCCCHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDD--T----SIFPLLESGNIFLMLGNFRKGVEQFQLALK---ISSENVSA 230 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~a 230 (1173)
......|+.+|...|++.+|...+.....-.- . -.+.+.....++...+++.+|...++++.. ..+..+.
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~- 215 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES- 215 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH-
Confidence 34556788888888999999888887653211 1 146677888899999999999999998743 2233332
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 231 HYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 231 ~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
..+..+...|..+...++|.+|...|-++...+.
T Consensus 216 --lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 216 --LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp --HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 4566777888888889999999988888877554
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.99 E-value=1 Score=51.33 Aligned_cols=95 Identities=13% Similarity=0.025 Sum_probs=70.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhhcC--CCCCC-----------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 045024 533 EARSDYQAAVVSYRLARYAISSS--SGTVP-----------NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599 (1173)
Q Consensus 533 ~~~g~~~~A~~~~~kAl~l~~~~--pe~~~-----------~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~ 599 (1173)
...|+.+.|...+++|+.+..-. ++... ...+..+...++..+...|++++|+..+..++..+|.+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34566666667777665543321 11000 011223455678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 045024 600 EVLQVYAFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 600 ~~~~~la~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
..+..+-.++...|+..+|++.|+++-.
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998755
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.93 E-value=2.4 Score=48.34 Aligned_cols=61 Identities=10% Similarity=-0.097 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALK 222 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 222 (1173)
+...++..+...|++++|+..+.+++..+|-+-.++..+..++...|+..+|+..|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677788889999999999998999998888888888889999999999888887654
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.49 E-value=2.2 Score=45.16 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=29.2
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 045024 104 HGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPT 158 (1173)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 158 (1173)
+.|+.++|+......++.+|.+......+..++.-.|+|+.|...++.+.+++|.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4445555555555555555555555555555555555555555555555555554
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.22 E-value=3.6 Score=51.87 Aligned_cols=99 Identities=8% Similarity=-0.072 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Q 045024 126 FWAFRRLGYLQLHHKKWSEAVQSLQHAIRG----YPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD-DTSIFPLLES 200 (1173)
Q Consensus 126 ~~a~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 200 (1173)
...+..+...|.+.|+.++|..+|.++.+. -.-+...|..+...|.+.|+.++|.+.|++..+.. ..+..++..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345777777888888888888888665432 23357777888888888888888888888876653 2356677777
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHhhc
Q 045024 201 GNIFLMLGNF-RKGVEQFQLALKIS 224 (1173)
Q Consensus 201 a~~~~~~g~~-~~A~~~~~~al~~~ 224 (1173)
...+.+.|+. ++|.+.|+++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7777777774 67778888777643
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.79 E-value=7 Score=38.65 Aligned_cols=100 Identities=15% Similarity=-0.012 Sum_probs=53.8
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045024 103 EHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKS 182 (1173)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 182 (1173)
...|+++.|.+..+.. ++...|..+|......|+++-|+.+|+++ ++. ..+..+|...|+.+.-.+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~---~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ-----HSF---DKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCH---HHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCH---HHHHHHHHHhCCHHHHHHH
Confidence 4556666666665543 34556666777777777777776666664 222 2233444555655554444
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 045024 183 YGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLA 220 (1173)
Q Consensus 183 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 220 (1173)
-+.+..... . .....++..+|+++++++.|.+.
T Consensus 83 a~iA~~~g~--~---n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRED--F---GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTTC--H---HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCcc--H---HHHHHHHHHcCCHHHHHHHHHHC
Confidence 443333221 1 12234455667777777766553
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.50 E-value=3.3 Score=43.81 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 045024 135 LQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSI 194 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 194 (1173)
..++.|+.++|+......++.+|.|......+..++.-.|+++.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 356789999999999999999999999999999999999999999999999999998753
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.96 E-value=40 Score=38.84 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=121.2
Q ss_pred ccCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HH
Q 045024 35 NSESKEKAAEHFVIAAKL------NPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELL----EH 104 (1173)
Q Consensus 35 ~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~~~a~~~La~~~----~~ 104 (1173)
.++ +++|++.+....+. .+....+...+..++.. .|+++...+.+.-..........+...+.... ..
T Consensus 29 ~~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~-~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLAS-RNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 344 88888877544432 23456788888999999 99999888877655544444333322222211 11
Q ss_pred CCCHHHHHHHHHHHHhh----CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C----CHHHHHHHH
Q 045024 105 GGKESLEVVVCREASDK----SPR-------AFWAFRRLGYLQLHHKKWSEAVQSLQHAIRG-YP-T----SPHLWEALG 167 (1173)
Q Consensus 105 ~g~~~~A~~~~~~al~~----~p~-------~~~a~~~la~~~~~~g~~~~A~~~l~~al~~-~p-~----~~~~~~~la 167 (1173)
....+... ....+.. ..+ .......++.++...|++.+|...+.....- .. . -.+.+....
T Consensus 107 ~~~~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22222111 1111111 111 2345678999999999999999999987642 11 1 156777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 168 LAYHRLGMFSAAIKSYGRAIE---LDDTS----IFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~al~---~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+++...+++..|...++++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999998743 22333 244567889999999999999999988764
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.97 E-value=3.7 Score=47.43 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC
Q 045024 521 YPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLD 598 (1173)
Q Consensus 521 ~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~ 598 (1173)
...++..+|..|...|++++|.+.|.++...... ..+....+....+++...+++..+...++++... ...+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 3457789999999999999999999998654322 3456678999999999999999999999998654 1222
Q ss_pred HH----HHHHHHHHHHHcCChHHHHHHHHHHhhhccc
Q 045024 599 AE----VLQVYAFSLWQLGKYDLALSMARNLASSVSA 631 (1173)
Q Consensus 599 ~~----~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~ 631 (1173)
+. .....|.++...++|.+|...|-.++.....
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 22 3355788888999999999999988775543
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.11 E-value=3.6 Score=48.27 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 045024 94 SGEALCELLEHGGKESLEVVVCREASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRL 173 (1173)
Q Consensus 94 a~~~La~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 173 (1173)
.+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 46788888888888899999999999999999999999999998889999999888888877666788888888777653
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.84 E-value=48 Score=43.29 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--------------------
Q 045024 29 GLHLWENSESKEKAAEHFVIAAKLNPQNAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLS-------------------- 88 (1173)
Q Consensus 29 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~-------------------- 88 (1173)
...+...+. ++-+.+ .+...|.++...+.+|.++.. .|++++|..+|+++-..-
T Consensus 819 ~~~l~~~~~-~~~~~~----l~~~~~~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 819 VEKLFLFKQ-YNACMQ----LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHSC-TTHHHH----HHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHhhh-HHHHHH----HhhhccCCcHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 333444444 444433 345677888888999999999 999999999998873210
Q ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 89 ---PDDSVSGEALCELLEHGGKESLEVVVCREASDKSPR-AF----WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 89 ---p~~~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~-~~----~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
...+..+..+..++.+.|.++.+++..+.+++..+. +. ..|..+-..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 011234566777888888899999888888876543 22 25666777788889999888777554221 2234
Q ss_pred HHHHHHHHHHHHcCC
Q 045024 161 HLWEALGLAYHRLGM 175 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~ 175 (1173)
..+..+.......|.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 444444444444444
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.11 E-value=5.6 Score=46.60 Aligned_cols=78 Identities=15% Similarity=0.027 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLL 239 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 239 (1173)
.+..+|.+......++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556788888888888999999999999999999999999999999999999999988888876667777666655443
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.35 E-value=1.1e+02 Score=38.37 Aligned_cols=210 Identities=13% Similarity=0.034 Sum_probs=102.0
Q ss_pred HHHHHHHhhc--ccHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH
Q 045024 389 FWVTLGCLSN--YNGLKQHALIRGLQLDVSL--ADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA 464 (1173)
Q Consensus 389 ~~~~Lg~~~~--~~~~a~~a~~kal~l~p~~--~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~ 464 (1173)
+-..||.++. ....+.+.+...+..+... ..+-+.+|.++...|+-+.....+..+.+...+.. ....-++..+.
T Consensus 457 AaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v-rR~aalgLGll 535 (963)
T 4ady_A 457 ASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI-TRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH-HHHHHHHHHhh
Confidence 4456777765 3345566677666543321 13556789999999998777777776665332221 11111233444
Q ss_pred hcCCHHHHHHHHHHHHhcCCchHHHHHH--HHHHHHhCCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045024 465 SESLVDDAFESCLRAVQILPLAEFQIGL--AKLAKLSGHLSSSQVFGAIQQAIQRGPH-YPESHNLYGLVCEARSDYQAA 541 (1173)
Q Consensus 465 ~~g~~~eA~~~~~~al~~~p~~~~~~~l--a~l~~~~g~~~~~~A~~~l~~al~~~P~-~~~a~~~lg~i~~~~g~~~~A 541 (1173)
..|+.+.+-.+.+.... .+++-..++- +......|... ..+++.+-.....+++ +..-...+|......|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 67887766666555443 3444333332 22222333332 4566633333333444 333223333333344555434
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHH--hcCC-HHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcC
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLS--RAGN-ALDAVRECESLERQGMLDA---EVLQVYAFSLWQLG 613 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~--~~g~-~~eAi~~~~~~~~~~p~~~---~~~~~la~a~~~~g 613 (1173)
...++. +.... + ..+.+..+.++. ..|+ ..+|+..+.++. .++++. .+.+.+|.+.....
T Consensus 614 ~rlv~~----L~~~~-d------~~VR~gAalALGli~aGn~~~~aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 614 PRIVQL----LSKSH-N------AHVRCGTAFALGIACAGKGLQSAIDVLDPLT-KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHTTT----GGGCS-C------HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHH----HHhcC-C------HHHHHHHHHHHHHhccCCCcHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHhcCCc
Confidence 333331 22111 1 123333322222 2333 378888888885 444442 24455555554443
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.68 E-value=12 Score=43.69 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHccCCHHHHH----------HHHHHHHh-----hCC
Q 045024 36 SESKEKAAEHFVIAA-----------KLNPQNAVAFRYLGHYYTRFSIDTQRAI----------KCYQRAVS-----LSP 89 (1173)
Q Consensus 36 ~~~~~~A~~~~~~al-----------~~~p~~~~a~~~lg~~~~~~~g~~~eA~----------~~~~~al~-----~~p 89 (1173)
.+++++|..+-...+ .+|+-.+.+|++.+.++.. .|+..... ..+-.+++ .++
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~-~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHET-LARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-hcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 334888877665443 1234456778888888877 77665432 12222222 222
Q ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC----c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 045024 90 DD-SVSGEALCELLEHGGKESLEVVVCREASDKSPR----A---FWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTS 159 (1173)
Q Consensus 90 ~~-~~a~~~La~~~~~~g~~~~A~~~~~~al~~~p~----~---~~a~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 159 (1173)
.. ...+..+-+.|...+.++.|.....++. .|. + ...++.+|.++..+++|.+|.+.+..+++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22 2337777888888889999998888874 332 1 4456778888888999999988888888877643
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.06 E-value=28 Score=45.56 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIELD--------------------- 190 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------- 190 (1173)
+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555666655543 345567788888899999999999999999998763210
Q ss_pred --CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 045024 191 --DTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLL 258 (1173)
Q Consensus 191 --p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l 258 (1173)
...+..+..+..++.+.|.++.+++.-+.+++..+.+.... ....+...=+.....++|++|...+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~--~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL--SIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH--HHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 01234456777888889999999999999998764433211 1122333334445556666655433
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.17 E-value=7.7 Score=44.69 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCh----HHH
Q 045024 127 WAFRRLGYLQLHHKKWSEAVQSLQHAIRGYP---TSPHLWEALGLAYHRLGMFSAAIKSYGRAIELDD--TSI----FPL 197 (1173)
Q Consensus 127 ~a~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~a~ 197 (1173)
.+...+|..|...|++++|.+.|.++..... .-.+.+....+++...+++..+...+.++..... .++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3455666666666666666666666554322 2245556666666666677766666666654321 122 223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhc
Q 045024 198 LESGNIFLMLGNFRKGVEQFQLALKIS 224 (1173)
Q Consensus 198 ~~la~~~~~~g~~~~A~~~~~~al~~~ 224 (1173)
...|.++...++|.+|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 344556666777777777777666543
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.34 E-value=11 Score=43.86 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=57.3
Q ss_pred HHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh----
Q 045024 135 LQLHHKKWSEAVQSLQHAIR-----------GYPTSPHLWEALGLAYHRLGMFSAAI----------KSYGRAIEL---- 189 (1173)
Q Consensus 135 ~~~~~g~~~~A~~~l~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~---- 189 (1173)
.++..+++++|..+-...+. +++-...+|+..+.++...|+..... ..+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567888888877665541 13345667888888888888776532 222233322
Q ss_pred -CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 045024 190 -DDT-SIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAE 266 (1173)
Q Consensus 190 -~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~ 266 (1173)
++. ....+..+-+.|...+.++.|.....++. .|.+.......+..+.-.|+.....++|.+|.+.+..|+...+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 222 24567788899999999999999999874 4544222334566777788888888889999888888876543
No 260
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=76.80 E-value=0.62 Score=28.40 Aligned_cols=10 Identities=50% Similarity=1.395 Sum_probs=9.1
Q ss_pred cCCCCCCchh
Q 045024 1111 TWPPEMRPAE 1120 (1173)
Q Consensus 1111 ~~~~~~~~~~ 1120 (1173)
+||||.+|..
T Consensus 5 sWpPef~pg~ 14 (22)
T 3ktp_B 5 NWPPEFHPGV 14 (26)
T ss_pred cCCcccccCC
Confidence 7999999976
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.07 E-value=1.4e+02 Score=35.80 Aligned_cols=125 Identities=9% Similarity=-0.111 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHh---HHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 045024 423 HIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGM---SADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKLAKLS 499 (1173)
Q Consensus 423 ~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l---~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l~~~~ 499 (1173)
.++.......+.+.|...|.+.....+-+...+... ++......+...++...+.+.....++.....-.+....+.
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHC
Confidence 344445555688999999987765433333222221 12122233435677777777665554444333334445556
Q ss_pred CCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045024 500 GHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLAR 549 (1173)
Q Consensus 500 g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl 549 (1173)
++ ...+...++++-...+..+...+-+|..+...|+.++|..+|+++.
T Consensus 299 ~d--~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 299 GD--RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp TC--HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 65 4567777766554444567888999999999999999999999874
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.15 E-value=2.4e+02 Score=35.48 Aligned_cols=298 Identities=11% Similarity=0.051 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCh----hHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCC-------ch
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSID-PSLA----LPWAGMSADVQASESLVDDAFESCLRAVQILP-------LA 486 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~-P~~~----~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p-------~~ 486 (1173)
.+...+|.++. |+.++++..+.+.+... .+++ .+.++ +|.+ ..|..+++.+.+...+..+. .+
T Consensus 377 sA~aSLGlIh~--g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla-LGli--~ag~~~~~~~lL~~~L~~~~~~~~~~~~~ 451 (963)
T 4ady_A 377 TATASLGVIHK--GNLLEGKKVMAPYLPGSRASSRFIKGGSLYG-LGLI--YAGFGRDTTDYLKNIIVENSGTSGDEDVD 451 (963)
T ss_dssp HHHHHHHHHTS--SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH-HHHH--TTTTTHHHHHHHHHHHHHHSSCCSCHHHH
T ss_pred HHHHHhhhhcc--CchHHHHHHHHHhccccCCCcHHHHHHHHHH-HHHh--cCCCcHHHHHHHHHHHcCccccccccccH
Confidence 34445555544 55666777666655321 1221 12223 2323 34554567777777665432 11
Q ss_pred ----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 045024 487 ----EFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHY--PESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVP 560 (1173)
Q Consensus 487 ----~~~~~la~l~~~~g~~~~~~A~~~l~~al~~~P~~--~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~ 560 (1173)
.+-++++.++.-.++ +++...+...+..+... ..+-..+|.++...|+-+-....+..+. +..
T Consensus 452 ~ir~gAaLGLGla~~GS~~---eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~----- 520 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSAN---IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQ----- 520 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCC---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCS-----
T ss_pred HHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccC-----
Confidence 223344444333333 46677777777644321 1345678888888888766666666542 211
Q ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHhhhccccccchh
Q 045024 561 NSHFQDISINLARSLSRAGNALDAVRECESLERQGMLD---AEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSA 637 (1173)
Q Consensus 561 ~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~---~~~~~~la~a~~~~g~~~eA~~~~~~aL~~~p~~~~~~~ 637 (1173)
.... .-...+|-.+...|+.+.+-...+.+.. ..++ ..+.+.+|.+|...|+...-...+..+.+. + .+.-.
T Consensus 521 ~e~v-rR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~--~d~VR 595 (963)
T 4ady_A 521 HGNI-TRGLAVGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-S--NDDVR 595 (963)
T ss_dssp CHHH-HHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-S--CHHHH
T ss_pred cHHH-HHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-C--cHHHH
Confidence 1111 1112334444467777766666665543 2222 224466788899999975555577766652 1 11122
Q ss_pred hhhHHHHHHHHHHhcChhhhhHHhhhCCCCc--cccchhHHHHHHhhhccCccchHHHHhcccccccCCccchhhHHHHH
Q 045024 638 AASVSFICRLLYHISGLDSTINSILKMPKGL--FQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVA 715 (1173)
Q Consensus 638 ~~~~~~la~l~~~~g~~~~A~~~l~~~p~~~--~~~~~~~~~l~~l~~l~~~~~~~~a~~~~~~~~~~~~~~a~~~~l~a 715 (1173)
..++..+|.+ ..|..+.....+...-... .-...+...+|.+.. .....+++..+.....+++......-..+
T Consensus 596 raAViaLGlI--~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~a---Gn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 596 RAAVIALGFV--LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACA---GKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHHHHHHHH--TSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS---SSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhh--ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc---CCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 2334444433 3344444334333222111 111122233443332 22223344445555566666666667777
Q ss_pred HHHhhhCCCCCc-cccchhHHHHHHHHh
Q 045024 716 LNKLVKNGPESC-LGFNSGIFHLRKVLH 742 (1173)
Q Consensus 716 ~~~~~~~~~~~~-~~~~~Ai~~l~k~l~ 742 (1173)
++..+.+..+.. -++.+-++.+.+.+.
T Consensus 671 LG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 777776654110 023333444555554
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.27 E-value=2.1e+02 Score=34.20 Aligned_cols=121 Identities=12% Similarity=-0.087 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 045024 463 QASESLVDDAFESCLRAVQILPL--AEFQIGLAKLAKLSGHLS-SSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQ 539 (1173)
Q Consensus 463 ~~~~g~~~eA~~~~~~al~~~p~--~~~~~~la~l~~~~g~~~-~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~ 539 (1173)
.....+.+.|...+.......+. .+.......+........ ..++...+.+.....++ ......++....+.|+++
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHH
Confidence 33455889999988877554332 222222233332332222 45677777776554444 333444444566789999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045024 540 AAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLER 593 (1173)
Q Consensus 540 ~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~ 593 (1173)
.|...|++.- . . ........+.+|+.+...|+.++|...|+++..
T Consensus 303 ~a~~~~~~l~---~----~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLP---M----E--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSC---T----T--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcc---c----c--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998551 1 1 122355789999999999999999999999864
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.00 E-value=41 Score=33.82 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCChHHHHH
Q 045024 543 VSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDAEVLQVYAFSLWQLGKYDLALS 620 (1173)
Q Consensus 543 ~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~~~~~~la~a~~~~g~~~eA~~ 620 (1173)
.++++++..+...+.-..++++..+|...+... ..++..++.+.|.-+... +......+...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 578888776665544444788888888888765 345578999999998765 55556677778899999999999999
Q ss_pred HHHHHhhhc
Q 045024 621 MARNLASSV 629 (1173)
Q Consensus 621 ~~~~aL~~~ 629 (1173)
+|+..++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999854
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.54 E-value=2e+02 Score=31.14 Aligned_cols=27 Identities=19% Similarity=-0.033 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045024 520 HYPESHNLYGLVCEARSDYQAAVVSYR 546 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~~~~A~~~~~ 546 (1173)
.+|..+..+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 489999999999999999999998885
No 266
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=49.09 E-value=2.5e+02 Score=29.28 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHH
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~ 463 (1173)
+.+-...++.+..+.++|++..+..+++.+.+++...--.+++..+|
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 45667788999999999999999999999988876544444444444
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.62 E-value=1.8e+02 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=12.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 045024 460 ADVQASESLVDDAFESCLRAVQIL 483 (1173)
Q Consensus 460 a~~~~~~g~~~eA~~~~~~al~~~ 483 (1173)
+..+...|++++|.++|+..++..
T Consensus 108 A~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 108 AGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334555555555555555555543
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=45.89 E-value=3.2e+02 Score=29.49 Aligned_cols=26 Identities=12% Similarity=-0.178 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHH
Q 045024 598 DAEVLQVYAFSLWQLGKYDLALSMAR 623 (1173)
Q Consensus 598 ~~~~~~~la~a~~~~g~~~eA~~~~~ 623 (1173)
++.....+|..|++.|++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45566666666666666666666554
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.69 E-value=63 Score=31.36 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCChHHHH
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDAEVLQVYAFSLWQLGKYDLAL 619 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~~~~~~la~a~~~~g~~~eA~ 619 (1173)
..+++++++.+...+.-..++++..+|...+... + ++.++|..+... +......+...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3456666665554433333678888888877653 3 466678887665 5555677778889999999999999
Q ss_pred HHHHHHhhhc
Q 045024 620 SMARNLASSV 629 (1173)
Q Consensus 620 ~~~~~aL~~~ 629 (1173)
++|+..++..
T Consensus 117 ~Iy~~Gi~~~ 126 (164)
T 2wvi_A 117 AIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999999854
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=42.05 E-value=0.012 Score=67.07 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=110.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHHhcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045024 416 SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAVQILPLAEFQIGLAKL 495 (1173)
Q Consensus 416 ~~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~la~l 495 (1173)
+.|.+|..||.++...+...+|++.|-++ .||++..- ...+..+.|++++=+.++.-+.+...++.....+...
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~e----Vi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYME----VVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSH----HHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHH----HHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 46789999999999999999999999765 46665333 3335668999999999988887765544444455555
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHH
Q 045024 496 AKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSL 575 (1173)
Q Consensus 496 ~~~~g~~~~~~A~~~l~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~ 575 (1173)
+.+.+++. .++..+. .|+.... ...|+=++..|.|+.|.-.|..+ ++ +..|+.++
T Consensus 126 yAk~~rL~------elEefl~-~~N~A~i-q~VGDrcf~e~lYeAAKilys~i-------sN----------~akLAstL 180 (624)
T 3lvg_A 126 LAKTNRLA------ELEEFIN-GPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV-------SN----------FGRLASTL 180 (624)
T ss_dssp HHTSCSSS------TTTSTTS-CCSSSCT-HHHHHHHHHSCCSTTSSTTGGGS-------CC----------CTTTSSSS
T ss_pred HHhhCcHH------HHHHHHc-CCCcccH-HHHHHHHHHccCHHHHHHHHHhC-------cc----------HHHHHHHH
Confidence 55555543 1111111 2443332 56788888999999998888743 11 34466677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 045024 576 SRAGNALDAVRECESLERQGMLDAEVLQVYAFSLWQLGKYDLALSM 621 (1173)
Q Consensus 576 ~~~g~~~eAi~~~~~~~~~~p~~~~~~~~la~a~~~~g~~~eA~~~ 621 (1173)
...|+|..|++..+++ +++.+|-.+..++...+++.-|.-.
T Consensus 181 V~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHh
Confidence 7778888777765554 3444554455555555555444433
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=39.96 E-value=2.4e+02 Score=26.47 Aligned_cols=20 Identities=10% Similarity=-0.042 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHHhhCCC
Q 045024 71 SIDTQRAIKCYQRAVSLSPD 90 (1173)
Q Consensus 71 ~g~~~eA~~~~~~al~~~p~ 90 (1173)
.|..++..+...+.....|-
T Consensus 20 dG~v~qGveii~k~~~ssni 39 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTK 39 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHHHHHcCCCCc
Confidence 57777777777777665543
No 272
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=39.06 E-value=3e+02 Score=28.55 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHH
Q 045024 419 DAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQ 463 (1173)
Q Consensus 419 ~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~ 463 (1173)
+-...++.+..+.++|++.....+++.+.++....--.+++..+|
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 445678899999999999999999999988876544444444444
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.73 E-value=56 Score=31.29 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCChHHHH
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDAEVLQVYAFSLWQLGKYDLAL 619 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~~~~~~la~a~~~~g~~~eA~ 619 (1173)
..+++++++.+...+.-..++++..+|...+.. .+++.+.|.-+... +......+...|..+...|++.+|.
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345566655554443333367777777777754 23477888888765 4555667777889999999999999
Q ss_pred HHHHHHhhhcc
Q 045024 620 SMARNLASSVS 630 (1173)
Q Consensus 620 ~~~~~aL~~~p 630 (1173)
++|+..++...
T Consensus 122 ~Vy~~Gi~~~A 132 (152)
T 4a1g_A 122 AVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999998543
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=37.05 E-value=4.4e+02 Score=28.64 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 045024 520 HYPESHNLYGLVCEARSDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDA 599 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~~p~~~ 599 (1173)
.+|..+..+|..+.+.|++.+|..+|- +.. + + -+..+.++-.-+... .+|...
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-----lg~---~-~---s~~~~a~mL~ew~~~---------------~~~~e~ 186 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV-----LGT---K-E---SPEVLARMEYEWYKQ---------------DESHTA 186 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT-----TSC---T-T---HHHHHHHHHHHHHHT---------------SCGGGH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH-----hcC---C-c---hHHHHHHHHHHHHHh---------------cCCccH
Confidence 489999999999999999999988874 111 0 0 001121111111111 123344
Q ss_pred HHHHHH-HHHHHHcCChHHHHHHHHHHhh
Q 045024 600 EVLQVY-AFSLWQLGKYDLALSMARNLAS 627 (1173)
Q Consensus 600 ~~~~~l-a~a~~~~g~~~eA~~~~~~aL~ 627 (1173)
+.+... ..-|...|+...|...|+...+
T Consensus 187 dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444333 3557888999999887776655
No 275
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=36.76 E-value=3.9e+02 Score=27.90 Aligned_cols=43 Identities=0% Similarity=-0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD--DT-SIFPLLESGNIF 204 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~a~~~la~~~ 204 (1173)
-...++.+..+.++|++.+..+.++.+.+ +. +.+-...+..+|
T Consensus 10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 10 ENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 44556666666777777777777777665 43 333344444443
No 276
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.47 E-value=67 Score=32.83 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCChHHHH
Q 045024 542 VVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQ--GMLDAEVLQVYAFSLWQLGKYDLAL 619 (1173)
Q Consensus 542 ~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~~--~p~~~~~~~~la~a~~~~g~~~eA~ 619 (1173)
..++++++..+...+.-..++++..+|...+.. .+++..+|.-+... +......|...|..+...|++.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 456677766655543333367787888777763 24666778887765 5555667777889999999999999
Q ss_pred HHHHHHhhhcc
Q 045024 620 SMARNLASSVS 630 (1173)
Q Consensus 620 ~~~~~aL~~~p 630 (1173)
++|+..++...
T Consensus 171 ~Vy~~Gi~~~A 181 (223)
T 4aez_C 171 EVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 99999998543
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.84 E-value=2.3e+02 Score=35.94 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------C
Q 045024 132 LGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAIKSYGRAIEL---------------------D 190 (1173)
Q Consensus 132 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~ 190 (1173)
+...+...|.++-|. +.+...|.++..-+.+|.+|...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 445555666665443 344556666666777777777777777777777765311 0
Q ss_pred CC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-CCCHH
Q 045024 191 DT--SIFPLLESGNIFLMLGNFRKGVEQFQLALKIS-SENVS 229 (1173)
Q Consensus 191 p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 229 (1173)
+. ....|.....++...+-++-++...+.+++.. ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 12356678888999999999999999999743 44444
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.82 E-value=1.2e+02 Score=38.63 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045024 512 QQAIQRGPHYPESHNLYGLVCEARSDYQAAVVSYRLA 548 (1173)
Q Consensus 512 ~~al~~~P~~~~a~~~lg~i~~~~g~~~~A~~~~~kA 548 (1173)
...+...|.++..-+.+|.++...|++++|..+|++|
T Consensus 830 ~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 830 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455667888888899999999999999999999987
No 279
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=34.03 E-value=4e+02 Score=27.30 Aligned_cols=177 Identities=7% Similarity=-0.037 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhHHHHhHHHHHH-hcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045024 417 LADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQA-SESLVDDAFESCLRAVQILPLAEFQIGLAKL 495 (1173)
Q Consensus 417 ~~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~P~~~~a~~~l~a~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~la~l 495 (1173)
+.+-...++.+..+.++|++...+.+++.+.+|+...--.+++..+|- -.|....+.......-+.......-.....+
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Q ss_pred HHHhCCCChH------HHHHHHHHHHHhCCCCHH----HHHHHHHHHH----------HcCCHHHHHHHHHHHHHHhhcC
Q 045024 496 AKLSGHLSSS------QVFGAIQQAIQRGPHYPE----SHNLYGLVCE----------ARSDYQAAVVSYRLARYAISSS 555 (1173)
Q Consensus 496 ~~~~g~~~~~------~A~~~l~~al~~~P~~~~----a~~~lg~i~~----------~~g~~~~A~~~~~kAl~l~~~~ 555 (1173)
.........+ +.+..+++.+--...++. .+-+.|+.|. +..-.+.|...|+.|.++....
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred CCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045024 556 SGTVPNSHFQDISINLARSLSRAGNALDAVRECESLER 593 (1173)
Q Consensus 556 pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~~ 593 (1173)
-.....-+...+++--.-.|.-.|+.++|....+++..
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=32.62 E-value=3.2e+02 Score=25.68 Aligned_cols=119 Identities=12% Similarity=-0.026 Sum_probs=75.5
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH------------------HHHHH--HHcCCHHHHHHHHHHHHHhCCCCH
Q 045024 101 LLEHGGKESLEVVVCREASDKSPRAFWAFRR------------------LGYLQ--LHHKKWSEAVQSLQHAIRGYPTSP 160 (1173)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~------------------la~~~--~~~g~~~~A~~~l~~al~~~p~~~ 160 (1173)
-..-.|..++..+...+...-+|....-|.. +|..+ -.-|+....+.+|-+. +. +.
T Consensus 16 ~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~-~s 91 (172)
T 1wy6_A 16 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NT-LN 91 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TC-CC
T ss_pred HHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cc-hH
Confidence 3456788999999999988777654332321 11111 0123333333333321 11 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKI 223 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 223 (1173)
+..-.--..+..+|+-++-.+.+...+...+-+++.++.+|.+|.+.|+..+|.+.+.++-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 222222345667888888888888876767778999999999999999999999999998764
No 281
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=29.92 E-value=4.8e+02 Score=26.95 Aligned_cols=59 Identities=8% Similarity=-0.047 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 045024 161 HLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLM-LGNFRKGVEQFQL 219 (1173)
Q Consensus 161 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~-~g~~~~A~~~~~~ 219 (1173)
+-+..++.+..+.++|++.+...+++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiiss 65 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISS 65 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 34556677777888888888888887777665 34444555555433 3444444444433
No 282
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=29.78 E-value=4.7e+02 Score=26.80 Aligned_cols=60 Identities=8% Similarity=-0.088 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLM-LGNFRKGVEQFQL 219 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~-~g~~~~A~~~~~~ 219 (1173)
.+-...++.+..+.++|++.+....++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 8 re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiiss 69 (236)
T 3iqu_A 8 RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSS 69 (236)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 345566777788888888888888888877665 34445555555533 3444444444443
No 283
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=27.93 E-value=5.4e+02 Score=26.83 Aligned_cols=46 Identities=7% Similarity=-0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChhHHHHhHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSID--PSLALPWAGMSADVQ 463 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~--P~~~~a~~~l~a~~~ 463 (1173)
.+-...++.+..+.++|++...+.+++.+.+ |+...--.+++..+|
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 4556778999999999999999999999988 665444444344344
No 284
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.91 E-value=5.6e+02 Score=26.68 Aligned_cols=60 Identities=7% Similarity=-0.042 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-cCChHHHHHHHHH
Q 045024 160 PHLWEALGLAYHRLGMFSAAIKSYGRAIELDDT-SIFPLLESGNIFLM-LGNFRKGVEQFQL 219 (1173)
Q Consensus 160 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~-~g~~~~A~~~~~~ 219 (1173)
.+-...++.+..+.++|++.++...++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiiss 92 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhH
Confidence 455666777788888888888888888877665 34445555555533 2444444444433
No 285
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=24.59 E-value=6.1e+02 Score=26.37 Aligned_cols=44 Identities=5% Similarity=-0.085 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-ChHHHHHHHHHHH
Q 045024 162 LWEALGLAYHRLGMFSAAIKSYGRAIELD---DT-SIFPLLESGNIFL 205 (1173)
Q Consensus 162 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-~~~a~~~la~~~~ 205 (1173)
-...++.+..+.++|++.+..+.++.+.+ +. +.+-...+..+|-
T Consensus 30 ~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyK 77 (260)
T 2npm_A 30 SNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYK 77 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 34456666667777777777777777665 33 3344444444443
No 286
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=23.46 E-value=6.4e+02 Score=26.22 Aligned_cols=46 Identities=7% Similarity=-0.013 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCChhHHHHhHHHHH
Q 045024 418 ADAWAHIGKLYGEVGEKKLARQAFDSARSID---PSLALPWAGMSADVQ 463 (1173)
Q Consensus 418 ~~a~~~Lg~~y~~~g~~e~A~~~f~~al~~~---P~~~~a~~~l~a~~~ 463 (1173)
.+-...++.+..+.++|++...+.+++.+.+ |+...--.+++..+|
T Consensus 28 re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 28 RESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 3455678889999999999999999999987 655443344344344
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.37 E-value=2e+02 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHhhhcCC
Q 045024 230 AHYGLASGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGN 274 (1173)
Q Consensus 230 a~~~la~~~~~l~~~~~a~g~~~~A~~~l~~Al~~~~~~~~~~~~ 274 (1173)
...+.+..+...++.....|.|++|++..++|..++.....+...
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs 54 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTES 54 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556788889999999999999999999999999998887766533
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.53 E-value=5.3e+02 Score=28.15 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045024 520 HYPESHNLYGLVCEARSD--YQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLE 592 (1173)
Q Consensus 520 ~~~~a~~~lg~i~~~~g~--~~~A~~~~~kAl~l~~~~pe~~~~~~~~~~~~~La~~~~~~g~~~eAi~~~~~~~ 592 (1173)
.+|.++.+||++-...-- ...++..|.+++......-++ +....|..+|..+.+.+++.+|+..+.++.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n----~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSD----HHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTT----CCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhcc----CCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 688888899988876433 334888999887765543221 123367778999999999999999988774
No 289
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=21.02 E-value=1.6e+02 Score=29.56 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCCC
Q 045024 58 VAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDD 91 (1173)
Q Consensus 58 ~a~~~lg~~~~~~~g~~~eA~~~~~~al~~~p~~ 91 (1173)
...+.+|.++.. .++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMF-DSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHH-HhCHHHHHHHHHHHHHHCCHh
Confidence 456677777777 777777777777777776654
Done!