BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045029
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 219/488 (44%), Positives = 301/488 (61%), Gaps = 45/488 (9%)
Query: 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNL 61
K ++L+FIP+PG GHL S +E A+LL + D L +TV +K P +Y +S+ AS
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ- 66
Query: 62 SSRIKFINLPDDQPDKES--TPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVL 119
+I+ I+LP+ +P + P+ + F+ES PHVK + + S ++ G VL
Sbjct: 67 -PQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-----SNKVVGLVL 120
Query: 120 DMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITELKDSD---AVLE 176
D FC MI+V +EF +PSYLF TS FL ML ++ EE DSD +L
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE-----VFDDSDRDHQLLN 175
Query: 177 VPGLVNSVPAKVWPSVVFNKEWAEV-LNQQARTFRGTKGIMVNTFEELESHAVRSFSDGK 235
+PG+ N VP+ V P FNK+ + + A FR TKGI+VNTF +LE ++ + D
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 236 SKTPPLYPMGPILNIKGE-NYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWG-SFGE 293
K PP+Y +GP+L++KG+ N L + D I+ WLD+QP+ SVVFLCFGS G SFG
Sbjct: 236 EKIPPIYAVGPLLDLKGQPNPKLDQAQHDL---ILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 294 DQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMD--RTANIGKVI 351
Q++EIA L+ SG RFLWS ++ EK +V PEGF++ G +
Sbjct: 293 SQIREIALGLKHSGVRFLWS-------NSAEK--------KVFPEGFLEWMELEGKGMIC 337
Query: 352 GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411
GWAPQ+ VLAH AIGGFVSHCGWNS LES+WFGVPI TWP+YAEQQ NAF LV E G+ +
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
Query: 412 EIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFS 471
+++DYR + VV AE IE+G++ LM+ +S + K+V+EM E +R A+ DGGSS
Sbjct: 398 GLRVDYR-----KGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLI 452
Query: 472 SMGRLIDD 479
S+G+LIDD
Sbjct: 453 SVGKLIDD 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 220/488 (45%), Positives = 302/488 (61%), Gaps = 45/488 (9%)
Query: 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNL 61
K ++L+FIP+PG GHL S +E A+LL + D L +TV +K P +Y +S+ AS
Sbjct: 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ- 66
Query: 62 SSRIKFINLPDDQPDKES--TPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVL 119
+I+ I+LP+ +P + P+ + F+ES PHVK + + S ++ G VL
Sbjct: 67 -PQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-----SNKVVGLVL 120
Query: 120 DMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITELKDSD---AVLE 176
D FC MI+V +EF +PSYLF TS FL ML ++ EE DSD +L
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE-----VFDDSDRDHQLLN 175
Query: 177 VPGLVNSVPAKVWPSVVFNKEWAEV-LNQQARTFRGTKGIMVNTFEELESHAVRSFSDGK 235
+PG+ N VP+ V P FNK+ + + A FR TKGI+VNTF +LE ++ + D
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 236 SKTPPLYPMGPILNIKGE-NYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWG-SFGE 293
K PP+Y +GP+L++KG+ N L + D I+ WLD+QP+ SVVFLCFGS G SFG
Sbjct: 236 EKIPPIYAVGPLLDLKGQPNPKLDQAQHDL---ILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 294 DQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGK--VI 351
Q++EIA L+ SG RFLWS ++ EK +V PEGF++ GK +
Sbjct: 293 SQIREIALGLKHSGVRFLWS-------NSAEK--------KVFPEGFLEWMELEGKGMIC 337
Query: 352 GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411
GWAPQ+ VLAH AIGGFVSHCGWNS LES+WFGVPI TWP+YAEQQ NAF LV E G+ +
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
Query: 412 EIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFS 471
+++DYR + VV AE IE+G++ LM+ +S + K+V+EM E +R A+ DGGSS
Sbjct: 398 GLRVDYR-----KGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLI 452
Query: 472 SMGRLIDD 479
S+G+LIDD
Sbjct: 453 SVGKLIDD 460
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 238 bits (607), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 247/480 (51%), Gaps = 32/480 (6%)
Query: 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNL 61
K + IPSPG GHL+ VE A+ LV V+ + P T SL +S
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 62 SSRIKFINLPDDQPDKESTPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRL-AGFVLD 120
S + ++L D ST + V P +++V + + RL V+D
Sbjct: 65 SVFLPPVDLTDLS---SSTRIESRISLTVTRSNPELRKVFDSFVEGG----RLPTALVVD 117
Query: 121 MFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITELKDSDAVLEVPGL 180
+F T +VA EF VP Y+F+ + A L F L + L + T E ++ L +PG
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKL---DETVSCEFRELTEPLMLPGC 174
Query: 181 VNSVPAKVW--PSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKT 238
V V K + P+ + + L + ++ +GI+VNTF ELE +A+++ +
Sbjct: 175 V-PVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDK 233
Query: 239 PPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKE 298
PP+YP+GP++NI + E ++++ + WLD+QP SV+++ FGS G+ +Q+ E
Sbjct: 234 PPVYPVGPLVNIGKQ-----EAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNE 288
Query: 299 IACALEQSGHRFLWSLRRPP--SKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIG-WAP 355
+A L S RFLW +R P + ++ DP LP GF++RT G VI WAP
Sbjct: 289 LALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAP 348
Query: 356 QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKM 415
Q VLAHP+ GGF++HCGWNSTLES+ G+P+ WP+YAEQ+ NA L ++ A+ +
Sbjct: 349 QAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRA 408
Query: 416 DYRNDIMIENPTVVNAEVIERGIRCLM--EHNSEMRKRVKEMSEKARKALSDGGSSFSSM 473
+ +V E + R ++ LM E +R ++KE+ E A + L D G+S ++
Sbjct: 409 G--------DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 227/511 (44%), Gaps = 70/511 (13%)
Query: 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNL 61
+K +V IP P GH+ ++A+LL R +T + + H + + + A +
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRG--FHITFVNTEYNHKRLLKS--RGPKAFDG 62
Query: 62 SSRIKFINLPD-------------DQPDKESTPPKRFFGHFVESKKPHVKEVVANLTDES 108
+ F ++PD D P + K F KP+ E++ L + S
Sbjct: 63 FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFL-------KPYC-ELLTRL-NHS 113
Query: 109 PDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITEL 168
+ P + V D + I+ A+EF++P+ L+F+S A L L V I
Sbjct: 114 TNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSL---LNVMHFRSFVERGIIPF 170
Query: 169 KD----SDAVLE-----VPGLVNSVPAKVWPSVVF---NKEWAEVLNQQARTFRGTKGIM 216
KD ++ LE +PGL N + + N E + A I+
Sbjct: 171 KDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTIL 230
Query: 217 VNTFEELESHAVRSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGA------DKKADIMA 270
+NTF ELES + + S S P +YP+GP+ ++ + + + + + + +
Sbjct: 231 LNTFNELESDVINALS---STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLD 287
Query: 271 WLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYE 330
WL+ + SVV++ FGS +Q+ E A L FLW +R P
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR----------PDLVI 337
Query: 331 DPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390
+ + F + A+ G + W PQ VL HP+IGGF++HCGWNST ESI GVP+ W
Sbjct: 338 GGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397
Query: 391 PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRK 450
P +A+Q + + E + +EI + + + E ++N EVI + +M++
Sbjct: 398 PFFADQPTDCRFICNEWEIGMEIDTNVKRE---ELAKLIN-EVIAG------DKGKKMKQ 447
Query: 451 RVKEMSEKARKALSDGGSSFSSMGRLIDDFL 481
+ E+ +KA + GG S+ ++ ++I D L
Sbjct: 448 KAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 186/425 (43%), Gaps = 52/425 (12%)
Query: 64 RIKFINLPDDQPDK--ESTPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDM 121
IK+ N+ D P S P+ F+++ + + K V+ E+ + V D
Sbjct: 68 NIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAET--GKNITCLVTDA 125
Query: 122 FCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITELKDSDAVLEVPGL- 180
F ++A+E +T+G L + V E T E+ D ++ +PG
Sbjct: 126 FFWFGADLAEEMHAKWVPLWTAGPHSL--LTHVYTDLIREKTGSKEVHDVKSIDVLPGFP 183
Query: 181 ---VNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSK 237
+ +P V + + +A +L++ + +N+F + + SK
Sbjct: 184 ELKASDLPEGVIKDI--DVPFATMLHKMGLELPRANAVAINSFATIHPLIENELN---SK 238
Query: 238 TPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVK 297
L +GP N + + + WLD SSVV++ FGS + ++
Sbjct: 239 FKLLLNVGPF------NLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELT 292
Query: 298 EIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQI 357
+A +LE+ G F+WS R DP E LP+GF++RT GK++ WAPQ+
Sbjct: 293 ALAESLEECGFPFIWSFRG--------------DPKEKLPKGFLERTKTKGKIVAWAPQV 338
Query: 358 AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAF--ELVVELGLAVEIKM 415
+L H ++G F++H GWNS LE I GVP+ + P + +Q N E V+E+G+ V+
Sbjct: 339 EILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD--- 395
Query: 416 DYRNDIMIENPTVVNAEVIERGIRCLM--EHNSEMRKRVKEMSEKARKALSDGGSSFSSM 473
V+ E I++ + M E MR+++ ++ E A KA+ G+S
Sbjct: 396 ----------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDF 445
Query: 474 GRLID 478
LI
Sbjct: 446 TTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 172/368 (46%), Gaps = 41/368 (11%)
Query: 117 FVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEENTTITELKDSDAVLE 176
V D F ++A E V F+T+G L + + + ++ + + ++ + +
Sbjct: 116 LVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNF 175
Query: 177 VPGLVNSVPAKVWPSVVF---NKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSD 233
+PG+ + +VF N ++ +L++ + + +N+FEEL+ +D
Sbjct: 176 IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLT---ND 232
Query: 234 GKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGE 293
KSK +GP N + WL ++ +SVV++ FG+ +
Sbjct: 233 LKSKLKTYLNIGPF------NLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPP 286
Query: 294 DQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEV-LPEGFMDRTANIGKVIG 352
+V ++ ALE S F+WSLR D V LPEGF+++T G V+
Sbjct: 287 AEVVALSEALEASRVPFIWSLR---------------DKARVHLPEGFLEKTRGYGMVVP 331
Query: 353 WAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNA--FELVVELGLA 410
WAPQ VLAH A+G FV+HCGWNS ES+ GVP+ P + +Q+ N E V+E+G+
Sbjct: 332 WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVR 391
Query: 411 VEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSF 470
+E + ++ +M +++ E ++R+ ++ + E A +A+ GSS
Sbjct: 392 IEGGVFTKSGLMSCFDQILS-----------QEKGKKLRENLRALRETADRAVGPKGSST 440
Query: 471 SSMGRLID 478
+ L+D
Sbjct: 441 ENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 277 ESSVVFLCFGSWGS-FGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEV 335
E+ VV GS S E++ IA AL Q + LW D P +
Sbjct: 20 ENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF-------------DGNKPDTL 66
Query: 336 LPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAE 395
G R + W PQ +L HP F++H G N E+I+ G+P P++A+
Sbjct: 67 ---GLNTR------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFAD 117
Query: 396 QQFN 399
Q N
Sbjct: 118 QPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 349 KVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG 408
+V W PQ+ +L + F++H G ST+E++ VP+ P AEQ NA E +VELG
Sbjct: 308 EVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA-ERIVELG 364
Query: 409 LAVEIKMD 416
L I D
Sbjct: 365 LGRHIPRD 372
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 353 WAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVE 412
W P +VLAH ++H + LE+ GVP+ P +A + + E V+ELGL
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 413 IKMD 416
++ D
Sbjct: 346 LRPD 349
>pdb|3E98|A Chain A, Crystal Structure Of A Gaf Domain Containing Protein That
Belongs To Pfam Duf484 Family (Pa5279) From Pseudomonas
Aeruginosa At 2.43 A Resolution
pdb|3E98|B Chain B, Crystal Structure Of A Gaf Domain Containing Protein That
Belongs To Pfam Duf484 Family (Pa5279) From Pseudomonas
Aeruginosa At 2.43 A Resolution
Length = 252
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 433 VIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482
++ER +R L E N E R R+ ++ + AR + F RL+ D LD
Sbjct: 69 LVERQVRLLRERNIEXRHRLSQLXDVAR----ENDRLFDKTRRLVLDLLD 114
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 88 HFVE-SKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAA 146
H +E + P V +VAN S D A V+D+ C+I V D + +L+ TS
Sbjct: 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLF 107
Query: 147 FLG 149
LG
Sbjct: 108 ELG 110
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 349 KVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG 408
+V W PQ+A+L + FV+H G + E + P+ P A QF +++ LG
Sbjct: 286 EVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQ-AVDQFGNADMLQGLG 342
Query: 409 LAVEIKMD 416
+A ++ +
Sbjct: 343 VARKLATE 350
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 339 GFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWP 391
G + AN+ ++ W PQ A+L H + V H G +TL ++ GVP ++P
Sbjct: 286 GLGEVPANV-RLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 125 CMIEVADEFKVPSYLFFTSGAAF 147
C++EV DEFKV ++F ++ A +
Sbjct: 100 CLLEVMDEFKVDKFIFSSTAATY 122
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 149 GFMLRVQALHDEENTTITE--LKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQA 206
GFM +VQA HD T E LK D VL +P + W V +W Q
Sbjct: 8 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDW-----NQH 62
Query: 207 RTFRGTKGIMVNTFEE 222
+ +G+ F E
Sbjct: 63 KKLEKCRGVFPENFTE 78
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 350 VIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG 408
V+ P I VLA+ + + + FGVP +T P ++++ F+ FE V E G
Sbjct: 197 VLHLTPTIGVLAYYKVA--------TANFIKLAFGVPASTIPGFSDKLFSNFEPVYESG 247
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 350 VIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG 408
V+ P I VLA+ + + + FGVP +T P ++++ F+ FE V E G
Sbjct: 197 VLHLTPTIGVLAYYKVA--------TANFIKLAFGVPASTIPGFSDKLFSNFEPVYESG 247
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 143 SGAAFL----GFMLRVQALHDEENTTITE--LKDSDAVLEVP 178
SGA L GFM +VQA HD T E LK D VL +P
Sbjct: 130 SGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP 171
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 149 GFMLRVQALHDEENTTITE--LKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQA 206
GFM +VQA HD T E LK D VL +P + W V +W Q
Sbjct: 42 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDW-----NQH 96
Query: 207 RTFRGTKGIMVNTFEE 222
+ +G+ F E
Sbjct: 97 KELEKCRGVFPENFTE 112
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 384 GVPIATW---PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRC 440
G P++ + P+YA+++ N F +VVE+ K++ + + NP + N + R +R
Sbjct: 23 GKPVSAFHDIPLYADKEDNIFNMVVEIPRWTNAKLEITKEETL-NPIIQNTKGKLRFVRN 81
Query: 441 LMEHNSEMR 449
H+ +
Sbjct: 82 CFPHHGYIH 90
>pdb|2HGC|A Chain A, Solution Nmr Structure Of The Yjcq Protein From Bacillus
Subtilis. Northeast Structural Genomics Target Sr346
Length = 102
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 231 FSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKA 266
+SD + P LY +GP L KGENY L E G KA
Sbjct: 51 YSDDR---PHLYKLGPELTEKGENY-LKENGTWSKA 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,701,157
Number of Sequences: 62578
Number of extensions: 620852
Number of successful extensions: 1529
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 29
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)