Query 045029
Match_columns 485
No_of_seqs 187 out of 1311
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:11:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02554 UDP-glycosyltransfera 100.0 2.2E-74 4.8E-79 580.1 48.9 476 3-485 2-481 (481)
2 PLN02207 UDP-glycosyltransfera 100.0 4.7E-74 1E-78 568.6 47.6 459 1-482 1-465 (468)
3 PLN02167 UDP-glycosyltransfera 100.0 1.3E-72 2.9E-77 566.4 47.4 466 1-483 1-473 (475)
4 PLN00164 glucosyltransferase; 100.0 4.9E-72 1.1E-76 560.8 47.8 460 1-484 1-475 (480)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.6E-72 1.2E-76 554.6 46.9 436 3-482 7-450 (451)
6 PLN02562 UDP-glycosyltransfera 100.0 4.2E-71 9.2E-76 550.1 46.3 432 3-481 6-448 (448)
7 PLN02992 coniferyl-alcohol glu 100.0 7.9E-71 1.7E-75 546.5 45.3 444 2-482 4-469 (481)
8 PLN03004 UDP-glycosyltransfera 100.0 4.9E-71 1.1E-75 545.5 43.0 440 1-471 1-450 (451)
9 PLN03015 UDP-glucosyl transfer 100.0 7.6E-71 1.6E-75 543.4 44.2 448 1-481 1-467 (470)
10 PLN02555 limonoid glucosyltran 100.0 1.3E-70 2.8E-75 546.6 46.0 447 3-483 7-470 (480)
11 PLN02173 UDP-glucosyl transfer 100.0 1.5E-70 3.2E-75 541.7 45.8 424 3-481 5-447 (449)
12 PLN02152 indole-3-acetate beta 100.0 3.1E-70 6.8E-75 540.3 44.2 440 1-481 1-455 (455)
13 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.9E-69 4.1E-74 540.2 46.9 447 3-482 9-471 (477)
14 PLN02210 UDP-glucosyl transfer 100.0 1.1E-68 2.3E-73 533.4 45.2 431 3-481 8-454 (456)
15 PLN02534 UDP-glycosyltransfera 100.0 1.5E-68 3.2E-73 532.5 45.4 458 3-483 8-487 (491)
16 PLN02208 glycosyltransferase f 100.0 8.9E-68 1.9E-72 523.3 45.5 422 1-482 1-439 (442)
17 PLN02448 UDP-glycosyltransfera 100.0 2.1E-67 4.5E-72 527.9 45.2 435 3-483 10-458 (459)
18 PLN00414 glycosyltransferase f 100.0 1.9E-67 4.2E-72 521.5 43.5 423 1-482 1-440 (446)
19 PLN03007 UDP-glucosyltransfera 100.0 3.3E-67 7.2E-72 528.9 45.5 446 3-482 5-480 (482)
20 PLN02764 glycosyltransferase f 100.0 4.6E-67 1E-71 515.0 44.7 422 3-482 5-445 (453)
21 PLN02670 transferase, transfer 100.0 5.4E-67 1.2E-71 518.8 43.4 442 3-483 6-466 (472)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.2E-49 4.8E-54 400.0 33.7 405 4-482 21-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 4.5E-51 9.8E-56 419.7 8.7 382 5-462 2-426 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 2.3E-43 5E-48 362.7 24.8 399 3-461 5-438 (496)
25 TIGR01426 MGT glycosyltransfer 100.0 4.3E-42 9.4E-47 342.2 30.9 373 9-480 1-389 (392)
26 cd03784 GT1_Gtf_like This fami 100.0 3.4E-42 7.4E-47 344.6 23.7 366 4-461 1-387 (401)
27 COG1819 Glycosyl transferases, 100.0 3.1E-39 6.6E-44 317.8 22.9 387 3-483 1-401 (406)
28 PRK12446 undecaprenyldiphospho 99.9 1E-24 2.2E-29 212.1 24.0 324 1-454 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.2E-20 4.7E-25 181.0 24.5 304 4-441 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 9.7E-20 2.1E-24 175.1 28.0 325 5-462 2-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.8 2.7E-19 5.8E-24 173.0 24.6 85 346-448 229-317 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.2E-16 9.2E-21 153.5 27.3 324 4-458 2-337 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 3.4E-15 7.3E-20 146.7 26.5 323 5-452 1-331 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 1.6E-14 3.5E-19 142.8 25.2 106 356-477 261-383 (385)
35 TIGR01133 murG undecaprenyldip 99.6 2.3E-12 4.9E-17 126.6 28.6 90 355-462 243-335 (348)
36 PRK00025 lpxB lipid-A-disaccha 99.5 1.7E-12 3.7E-17 129.1 24.1 105 357-478 256-373 (380)
37 PRK13609 diacylglycerol glucos 99.5 2.8E-12 6.1E-17 127.4 25.1 164 277-478 201-367 (380)
38 PF04101 Glyco_tran_28_C: Glyc 99.5 4.4E-15 9.6E-20 129.4 -0.8 138 280-447 1-146 (167)
39 TIGR03590 PseG pseudaminic aci 99.4 1.9E-11 4.1E-16 115.3 21.6 103 279-402 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.4 4.3E-10 9.3E-15 111.9 30.0 161 277-478 201-367 (391)
41 PLN02605 monogalactosyldiacylg 99.4 3E-09 6.4E-14 105.7 33.4 96 346-462 265-362 (382)
42 COG4671 Predicted glycosyl tra 99.3 1.4E-09 3E-14 100.3 24.6 332 3-443 9-364 (400)
43 PF03033 Glyco_transf_28: Glyc 99.3 3.3E-12 7.1E-17 107.7 4.5 126 6-146 1-133 (139)
44 TIGR03492 conserved hypothetic 99.3 8.6E-09 1.9E-13 102.2 28.7 167 278-474 205-390 (396)
45 cd03814 GT1_like_2 This family 99.1 8.4E-08 1.8E-12 94.2 29.2 88 345-453 246-340 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.0 1.4E-06 2.9E-11 89.1 32.6 132 280-451 264-406 (465)
47 cd03823 GT1_ExpE7_like This fa 99.0 1E-06 2.2E-11 86.2 30.0 87 346-451 243-335 (359)
48 cd03800 GT1_Sucrose_synthase T 99.0 8.1E-07 1.8E-11 88.7 29.7 83 346-449 283-372 (398)
49 cd03794 GT1_wbuB_like This fam 98.9 8E-07 1.7E-11 87.8 26.4 85 346-451 275-371 (394)
50 PRK05749 3-deoxy-D-manno-octul 98.8 9.9E-06 2.1E-10 81.8 31.2 75 358-451 315-394 (425)
51 cd03817 GT1_UGDG_like This fam 98.8 5.4E-06 1.2E-10 81.4 28.0 81 345-447 258-345 (374)
52 cd03818 GT1_ExpC_like This fam 98.8 3.5E-05 7.5E-10 77.1 33.2 86 346-450 281-371 (396)
53 cd03801 GT1_YqgM_like This fam 98.7 4.6E-05 1E-09 74.3 31.8 87 345-450 255-346 (374)
54 cd03795 GT1_like_4 This family 98.7 2.1E-05 4.5E-10 77.1 29.0 131 280-448 192-335 (357)
55 cd03816 GT1_ALG1_like This fam 98.7 3E-05 6.5E-10 78.0 29.7 121 3-141 3-128 (415)
56 cd03808 GT1_cap1E_like This fa 98.7 3.2E-05 6.9E-10 75.3 29.1 85 346-451 246-335 (359)
57 TIGR03449 mycothiol_MshA UDP-N 98.7 7.3E-05 1.6E-09 75.0 31.8 85 346-451 283-374 (405)
58 cd03825 GT1_wcfI_like This fam 98.7 9.4E-05 2E-09 72.7 31.9 81 346-447 244-332 (365)
59 PRK10307 putative glycosyl tra 98.7 9.6E-05 2.1E-09 74.3 32.0 85 346-449 284-377 (412)
60 cd04962 GT1_like_5 This family 98.7 8.2E-05 1.8E-09 73.5 30.9 86 346-450 253-341 (371)
61 COG3980 spsG Spore coat polysa 98.6 6.9E-06 1.5E-10 74.1 19.5 144 280-456 160-304 (318)
62 cd03820 GT1_amsD_like This fam 98.6 9.1E-05 2E-09 71.7 29.5 90 346-456 235-330 (348)
63 PF04007 DUF354: Protein of un 98.6 4.4E-05 9.5E-10 73.2 26.1 138 265-443 167-309 (335)
64 TIGR02472 sucr_P_syn_N sucrose 98.6 0.00016 3.5E-09 73.3 29.8 85 345-448 316-409 (439)
65 TIGR00236 wecB UDP-N-acetylglu 98.6 8.5E-05 1.8E-09 73.4 27.2 106 346-478 255-363 (365)
66 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 1.2E-05 2.6E-10 79.3 21.0 136 278-449 198-341 (363)
67 cd03819 GT1_WavL_like This fam 98.5 0.00026 5.6E-09 69.4 30.4 86 346-449 246-335 (355)
68 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00059 1.3E-08 74.1 34.3 87 346-451 548-643 (1050)
69 cd03821 GT1_Bme6_like This fam 98.5 0.00044 9.6E-09 67.7 31.7 85 346-451 262-351 (375)
70 cd03798 GT1_wlbH_like This fam 98.5 0.00072 1.6E-08 66.0 33.1 83 346-447 259-346 (377)
71 cd03805 GT1_ALG2_like This fam 98.5 0.00024 5.2E-09 70.8 29.7 81 345-447 279-366 (392)
72 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.001 2.2E-08 64.3 29.5 67 367-451 326-392 (419)
73 cd03822 GT1_ecORF704_like This 98.4 0.0014 2.9E-08 64.3 32.2 84 346-449 247-338 (366)
74 PRK01021 lpxB lipid-A-disaccha 98.4 0.00038 8.3E-09 70.9 26.6 198 237-469 379-595 (608)
75 cd03799 GT1_amsK_like This is 98.4 0.0015 3.4E-08 63.7 31.0 84 345-447 235-329 (355)
76 cd03807 GT1_WbnK_like This fam 98.4 0.0027 5.8E-08 61.8 32.2 78 346-446 251-333 (365)
77 KOG3349 Predicted glycosyltran 98.3 2.4E-06 5.2E-11 69.2 8.0 114 280-411 5-130 (170)
78 cd05844 GT1_like_7 Glycosyltra 98.3 0.0004 8.7E-09 68.4 25.9 84 345-449 244-340 (367)
79 cd04951 GT1_WbdM_like This fam 98.3 0.001 2.2E-08 65.1 28.4 94 346-459 245-341 (360)
80 cd03796 GT1_PIG-A_like This fa 98.3 0.001 2.2E-08 66.5 28.2 78 346-443 250-332 (398)
81 PRK09922 UDP-D-galactose:(gluc 98.3 0.00067 1.5E-08 66.8 26.1 134 280-447 181-326 (359)
82 cd03802 GT1_AviGT4_like This f 98.3 0.00037 7.9E-09 67.7 24.0 127 281-443 173-307 (335)
83 cd03811 GT1_WabH_like This fam 98.2 0.00048 1E-08 66.7 23.9 88 346-452 246-339 (353)
84 PLN02949 transferase, transfer 98.2 0.005 1.1E-07 62.5 30.6 82 345-446 334-424 (463)
85 cd04955 GT1_like_6 This family 98.2 0.0046 9.9E-08 60.7 29.1 80 345-449 247-334 (363)
86 TIGR03087 stp1 sugar transfera 98.1 0.0021 4.6E-08 64.2 26.5 85 346-451 280-368 (397)
87 PF02684 LpxB: Lipid-A-disacch 98.1 0.00058 1.3E-08 66.5 21.3 107 355-472 253-367 (373)
88 PRK14089 ipid-A-disaccharide s 98.1 0.00033 7.2E-09 67.8 19.5 102 357-477 230-344 (347)
89 cd03812 GT1_CapH_like This fam 98.1 0.006 1.3E-07 59.7 28.4 87 346-452 249-338 (358)
90 TIGR02149 glgA_Coryne glycogen 98.0 0.018 3.9E-07 57.2 31.5 83 352-449 267-356 (388)
91 PRK15179 Vi polysaccharide bio 98.0 0.016 3.4E-07 61.5 31.1 93 346-456 574-674 (694)
92 TIGR03088 stp2 sugar transfera 98.0 0.023 5.1E-07 56.1 30.5 84 346-448 255-341 (374)
93 PLN00142 sucrose synthase 98.0 0.017 3.6E-07 61.7 29.5 115 23-143 320-440 (815)
94 cd03809 GT1_mtfB_like This fam 97.9 0.0081 1.7E-07 58.7 25.3 91 345-456 252-347 (365)
95 PLN02275 transferase, transfer 97.8 0.028 6E-07 55.6 27.7 74 347-442 287-371 (371)
96 cd03806 GT1_ALG11_like This fa 97.8 0.038 8.3E-07 55.6 28.8 83 345-449 304-397 (419)
97 TIGR02470 sucr_synth sucrose s 97.8 0.078 1.7E-06 56.7 33.2 79 346-442 619-707 (784)
98 PF13844 Glyco_transf_41: Glyc 97.6 0.00094 2E-08 66.5 13.2 120 278-411 284-411 (468)
99 PRK00654 glgA glycogen synthas 97.6 0.023 5E-07 58.1 23.9 70 358-443 352-427 (466)
100 cd03804 GT1_wbaZ_like This fam 97.6 0.00033 7.2E-09 68.7 9.4 133 282-453 198-335 (351)
101 cd03792 GT1_Trehalose_phosphor 97.5 0.084 1.8E-06 52.2 26.1 83 346-451 252-343 (372)
102 cd04946 GT1_AmsK_like This fam 97.5 0.0025 5.5E-08 63.9 15.0 110 346-476 289-405 (407)
103 COG0763 LpxB Lipid A disacchar 97.5 0.084 1.8E-06 50.8 23.7 111 359-480 261-379 (381)
104 TIGR03568 NeuC_NnaA UDP-N-acet 97.5 0.054 1.2E-06 53.4 23.6 130 278-443 201-338 (365)
105 PRK15484 lipopolysaccharide 1, 97.4 0.0095 2.1E-07 59.2 17.2 84 345-448 256-347 (380)
106 PLN02846 digalactosyldiacylgly 97.3 0.23 5.1E-06 50.1 25.7 73 350-445 288-364 (462)
107 PF00534 Glycos_transf_1: Glyc 97.3 0.0055 1.2E-07 53.1 12.7 89 345-454 72-167 (172)
108 COG5017 Uncharacterized conser 97.1 0.0062 1.3E-07 48.8 10.0 106 281-413 2-121 (161)
109 PRK15427 colanic acid biosynth 97.1 0.024 5.2E-07 56.8 16.1 83 345-447 278-373 (406)
110 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0024 5.1E-08 53.0 7.5 78 346-443 53-134 (135)
111 PF02350 Epimerase_2: UDP-N-ac 96.9 0.0025 5.4E-08 62.2 6.9 138 276-451 178-324 (346)
112 PRK09814 beta-1,6-galactofuran 96.6 0.0088 1.9E-07 58.2 8.5 109 346-478 207-331 (333)
113 cd04949 GT1_gtfA_like This fam 96.5 0.028 6E-07 55.6 11.5 83 346-446 261-346 (372)
114 COG0381 WecB UDP-N-acetylgluco 96.4 1 2.2E-05 43.7 23.2 106 347-479 263-371 (383)
115 cd03813 GT1_like_3 This family 96.1 0.29 6.2E-06 50.2 16.7 87 346-452 354-449 (475)
116 TIGR02918 accessory Sec system 96.0 0.14 3E-06 52.7 13.8 98 346-456 376-481 (500)
117 PHA01633 putative glycosyl tra 95.9 0.21 4.5E-06 48.3 13.7 83 346-443 201-306 (335)
118 KOG4626 O-linked N-acetylgluco 95.9 0.12 2.6E-06 52.3 12.1 119 278-413 758-887 (966)
119 cd04950 GT1_like_1 Glycosyltra 95.9 0.25 5.5E-06 48.8 14.8 78 346-445 254-341 (373)
120 COG3914 Spy Predicted O-linked 95.8 0.13 2.8E-06 51.8 11.8 124 276-413 427-560 (620)
121 PRK10125 putative glycosyl tra 95.7 2.5 5.5E-05 42.3 25.0 59 359-438 303-365 (405)
122 PLN02316 synthase/transferase 95.7 4.7 0.0001 44.9 30.8 101 346-464 900-1015(1036)
123 PF06722 DUF1205: Protein of u 95.1 0.024 5.2E-07 43.7 3.5 53 265-317 27-84 (97)
124 PRK10017 colanic acid biosynth 95.0 0.53 1.1E-05 47.2 13.6 101 358-482 323-424 (426)
125 PRK14098 glycogen synthase; Pr 94.5 0.5 1.1E-05 48.6 12.3 80 345-442 361-449 (489)
126 TIGR02095 glgA glycogen/starch 94.5 0.46 9.9E-06 48.7 12.0 82 346-443 346-436 (473)
127 cd03791 GT1_Glycogen_synthase_ 94.3 0.42 9.1E-06 49.0 11.4 82 346-443 351-441 (476)
128 PHA01630 putative group 1 glyc 93.7 2.7 5.9E-05 40.7 14.9 43 352-394 196-243 (331)
129 COG1817 Uncharacterized protei 93.3 7.2 0.00016 36.7 20.2 112 8-145 4-115 (346)
130 PF13524 Glyco_trans_1_2: Glyc 93.2 0.96 2.1E-05 34.3 9.0 82 371-477 9-91 (92)
131 cd03789 GT1_LPS_heptosyltransf 92.8 8.7 0.00019 36.1 18.4 38 5-42 1-38 (279)
132 PRK15490 Vi polysaccharide bio 92.6 15 0.00031 38.2 29.8 62 346-414 455-521 (578)
133 PF13579 Glyco_trans_4_4: Glyc 92.2 0.35 7.6E-06 40.6 5.9 96 19-141 6-103 (160)
134 PF13477 Glyco_trans_4_2: Glyc 92.0 2 4.3E-05 35.3 10.1 101 5-140 1-105 (139)
135 PF08660 Alg14: Oligosaccharid 90.2 4 8.6E-05 35.3 10.3 118 9-142 3-129 (170)
136 PRK02261 methylaspartate mutas 89.1 12 0.00025 31.0 12.5 62 1-72 1-62 (137)
137 PF12000 Glyco_trans_4_3: Gkyc 87.5 9 0.00019 33.0 10.5 43 96-141 52-95 (171)
138 COG4370 Uncharacterized protei 87.4 2.5 5.4E-05 39.4 7.3 110 346-476 294-407 (412)
139 PLN02501 digalactosyldiacylgly 87.0 1.8 3.9E-05 45.6 7.0 74 348-444 603-681 (794)
140 PLN02939 transferase, transfer 86.9 15 0.00034 40.4 14.0 83 346-443 837-930 (977)
141 cd03788 GT1_TPS Trehalose-6-Ph 86.6 2.4 5.1E-05 43.3 7.7 102 351-480 346-459 (460)
142 cd01635 Glycosyltransferase_GT 86.2 2.8 6.1E-05 37.3 7.3 49 346-396 161-217 (229)
143 PF06258 Mito_fiss_Elm1: Mitoc 85.6 8 0.00017 37.1 10.2 39 355-394 221-259 (311)
144 TIGR02400 trehalose_OtsA alpha 85.2 5.1 0.00011 40.7 9.2 102 352-481 342-455 (456)
145 PF10083 DUF2321: Uncharacteri 84.0 2.2 4.8E-05 35.4 4.8 74 390-482 78-151 (158)
146 PF01975 SurE: Survival protei 82.4 12 0.00025 33.2 9.1 36 5-43 2-37 (196)
147 PF07355 GRDB: Glycine/sarcosi 82.4 11 0.00025 36.1 9.5 30 12-42 29-58 (349)
148 COG1703 ArgK Putative periplas 81.9 16 0.00035 34.4 10.0 39 4-42 52-90 (323)
149 COG0438 RfaG Glycosyltransfera 81.8 46 0.001 31.2 14.3 85 346-451 257-348 (381)
150 TIGR02195 heptsyl_trn_II lipop 75.8 78 0.0017 30.5 19.2 38 5-42 1-38 (334)
151 TIGR02193 heptsyl_trn_I lipopo 75.7 17 0.00038 34.8 9.1 143 270-442 171-319 (319)
152 PRK14099 glycogen synthase; Pr 75.0 51 0.0011 33.9 12.6 40 1-44 1-48 (485)
153 PF13439 Glyco_transf_4: Glyco 74.5 17 0.00036 30.7 7.8 29 12-42 10-38 (177)
154 PLN03063 alpha,alpha-trehalose 72.7 11 0.00024 41.3 7.4 96 358-481 371-476 (797)
155 PF00731 AIRC: AIR carboxylase 70.6 37 0.00079 28.6 8.4 140 280-462 2-149 (150)
156 TIGR02919 accessory Sec system 69.9 8.7 0.00019 38.8 5.5 92 346-458 328-425 (438)
157 cd01635 Glycosyltransferase_GT 69.5 34 0.00074 30.0 9.1 25 13-39 12-36 (229)
158 cd02067 B12-binding B12 bindin 69.5 55 0.0012 26.0 10.7 47 5-57 1-47 (119)
159 PF04413 Glycos_transf_N: 3-De 69.3 26 0.00056 30.8 7.7 35 6-41 24-60 (186)
160 PRK05986 cob(I)alamin adenolsy 69.1 76 0.0016 27.9 10.4 106 1-124 20-126 (191)
161 TIGR03713 acc_sec_asp1 accesso 67.1 13 0.00027 38.6 6.1 75 346-446 409-489 (519)
162 PF04464 Glyphos_transf: CDP-G 66.8 4.4 9.4E-05 40.0 2.7 116 346-477 252-368 (369)
163 cd03793 GT1_Glycogen_synthase_ 65.4 29 0.00062 36.2 8.1 81 355-443 467-551 (590)
164 PF02571 CbiJ: Precorrin-6x re 63.3 23 0.00049 32.7 6.4 30 5-40 2-31 (249)
165 PRK10916 ADP-heptose:LPS hepto 60.7 1.2E+02 0.0027 29.4 11.6 38 5-42 2-39 (348)
166 COG0859 RfaF ADP-heptose:LPS h 60.6 1.7E+02 0.0036 28.4 16.3 39 4-42 2-40 (334)
167 cd02070 corrinoid_protein_B12- 59.3 53 0.0012 29.1 8.0 59 3-71 82-140 (201)
168 PF02441 Flavoprotein: Flavopr 57.5 16 0.00036 29.7 4.1 36 4-42 1-36 (129)
169 PRK10422 lipopolysaccharide co 56.4 1.4E+02 0.003 29.1 11.2 39 4-42 6-44 (352)
170 PRK02797 4-alpha-L-fucosyltran 56.1 1.9E+02 0.0041 27.6 11.8 81 346-442 206-292 (322)
171 cd07025 Peptidase_S66 LD-Carbo 55.3 20 0.00044 33.8 4.8 77 290-395 45-123 (282)
172 COG0541 Ffh Signal recognition 55.3 1E+02 0.0022 30.8 9.5 37 4-42 101-137 (451)
173 COG0801 FolK 7,8-dihydro-6-hyd 54.1 35 0.00077 28.9 5.5 34 280-313 3-36 (160)
174 PRK08305 spoVFB dipicolinate s 53.5 19 0.00042 31.8 4.0 39 2-42 4-42 (196)
175 smart00851 MGS MGS-like domain 53.3 93 0.002 23.3 7.4 27 112-138 54-89 (90)
176 COG1435 Tdk Thymidine kinase [ 52.3 1.6E+02 0.0036 25.9 9.3 34 7-42 8-41 (201)
177 COG2230 Cfa Cyclopropane fatty 52.2 15 0.00033 34.4 3.3 40 371-410 80-121 (283)
178 PF05159 Capsule_synth: Capsul 51.7 41 0.00089 31.4 6.3 41 348-391 185-225 (269)
179 PF00448 SRP54: SRP54-type pro 51.5 99 0.0022 27.3 8.3 87 5-122 3-92 (196)
180 PF05225 HTH_psq: helix-turn-h 51.2 23 0.00049 22.8 3.1 26 430-455 1-26 (45)
181 PF08766 DEK_C: DEK C terminal 50.2 75 0.0016 21.3 5.9 34 430-463 1-34 (54)
182 PRK10867 signal recognition pa 49.3 1.5E+02 0.0033 29.9 10.1 36 5-42 102-138 (433)
183 PF02951 GSH-S_N: Prokaryotic 48.5 29 0.00063 27.9 4.0 36 5-42 2-40 (119)
184 KOG0780 Signal recognition par 48.0 1.5E+02 0.0033 29.2 9.1 36 5-42 103-138 (483)
185 TIGR01425 SRP54_euk signal rec 47.6 1.6E+02 0.0035 29.6 9.9 36 5-42 102-137 (429)
186 PF01075 Glyco_transf_9: Glyco 47.0 36 0.00079 31.1 5.1 97 278-390 105-208 (247)
187 COG0496 SurE Predicted acid ph 46.9 1.2E+02 0.0025 28.0 8.0 95 20-141 16-124 (252)
188 TIGR02201 heptsyl_trn_III lipo 46.8 2.2E+02 0.0047 27.6 10.8 107 5-139 1-108 (344)
189 TIGR00715 precor6x_red precorr 46.5 1.3E+02 0.0027 28.0 8.4 20 20-39 12-31 (256)
190 COG2185 Sbm Methylmalonyl-CoA 46.1 30 0.00065 28.7 3.7 34 1-34 10-43 (143)
191 TIGR02201 heptsyl_trn_III lipo 46.0 1.4E+02 0.003 28.9 9.3 97 278-390 181-285 (344)
192 TIGR00087 surE 5'/3'-nucleotid 45.3 1.7E+02 0.0037 26.9 9.0 96 20-141 16-127 (244)
193 cd07062 Peptidase_S66_mccF_lik 45.3 32 0.00068 33.0 4.5 76 290-394 49-126 (308)
194 PRK13933 stationary phase surv 44.5 2E+02 0.0042 26.7 9.2 20 20-42 16-35 (253)
195 TIGR01162 purE phosphoribosyla 44.4 98 0.0021 26.2 6.6 33 429-463 116-148 (156)
196 PRK13932 stationary phase surv 44.4 1.5E+02 0.0033 27.5 8.5 96 20-141 21-132 (257)
197 cd01980 Chlide_reductase_Y Chl 44.4 1.8E+02 0.0038 29.3 9.8 26 112-140 349-374 (416)
198 PRK11889 flhF flagellar biosyn 42.1 1.7E+02 0.0038 29.2 8.9 37 4-42 242-278 (436)
199 cd01840 SGNH_hydrolase_yrhL_li 42.0 72 0.0016 26.6 5.7 37 278-315 51-87 (150)
200 PRK05595 replicative DNA helic 42.0 2.3E+02 0.005 28.7 10.3 37 5-43 203-240 (444)
201 PF02310 B12-binding: B12 bind 41.7 43 0.00093 26.5 4.2 34 5-40 2-35 (121)
202 PRK06321 replicative DNA helic 41.3 1.5E+02 0.0032 30.4 8.7 37 5-43 228-265 (472)
203 PF04127 DFP: DNA / pantothena 40.7 18 0.00039 31.7 1.8 39 2-42 2-52 (185)
204 TIGR02015 BchY chlorophyllide 40.6 2.7E+02 0.0058 28.1 10.4 27 112-141 354-380 (422)
205 PF06506 PrpR_N: Propionate ca 40.3 58 0.0013 28.1 5.0 33 361-394 31-63 (176)
206 PF02572 CobA_CobO_BtuR: ATP:c 39.5 2.1E+02 0.0045 24.8 8.1 35 4-40 4-38 (172)
207 PRK14501 putative bifunctional 39.5 48 0.001 36.1 5.3 109 350-482 346-462 (726)
208 cd07039 TPP_PYR_POX Pyrimidine 39.4 2.4E+02 0.0052 24.0 9.8 75 297-391 4-96 (164)
209 TIGR00959 ffh signal recogniti 39.2 2.3E+02 0.005 28.6 9.5 36 5-42 101-137 (428)
210 PRK06270 homoserine dehydrogen 38.9 2.2E+02 0.0048 27.6 9.3 58 355-413 80-149 (341)
211 PRK08506 replicative DNA helic 38.9 1.5E+02 0.0032 30.5 8.3 37 5-43 194-230 (472)
212 PF06925 MGDG_synth: Monogalac 38.9 96 0.0021 26.5 6.1 23 16-38 1-24 (169)
213 PRK07313 phosphopantothenoylcy 38.8 46 0.00099 29.1 4.1 35 5-42 3-37 (182)
214 KOG0853 Glycosyltransferase [C 38.3 27 0.00059 35.5 2.9 62 376-454 381-442 (495)
215 TIGR00064 ftsY signal recognit 38.3 3.4E+02 0.0074 25.4 10.1 36 5-42 74-109 (272)
216 cd02069 methionine_synthase_B1 38.1 1.8E+02 0.0038 26.2 7.8 49 3-57 88-136 (213)
217 PRK12446 undecaprenyldiphospho 37.9 90 0.002 30.5 6.5 98 279-390 3-120 (352)
218 KOG0202 Ca2+ transporting ATPa 37.7 5.1E+02 0.011 28.6 11.8 163 279-482 572-749 (972)
219 PLN02470 acetolactate synthase 37.7 93 0.002 32.9 7.0 90 284-391 2-109 (585)
220 COG1618 Predicted nucleotide k 37.6 1.3E+02 0.0029 25.7 6.3 38 4-42 6-43 (179)
221 cd01452 VWA_26S_proteasome_sub 37.2 1.8E+02 0.004 25.4 7.6 64 6-74 111-176 (187)
222 PRK05973 replicative DNA helic 37.2 1.5E+02 0.0032 27.2 7.2 36 5-42 66-101 (237)
223 PF12146 Hydrolase_4: Putative 36.7 63 0.0014 23.7 4.0 29 5-33 17-45 (79)
224 PRK10964 ADP-heptose:LPS hepto 36.5 3.3E+02 0.0071 26.0 10.1 39 4-42 1-39 (322)
225 cd00550 ArsA_ATPase Oxyanion-t 36.4 2.9E+02 0.0064 25.4 9.3 35 6-42 3-37 (254)
226 PRK10964 ADP-heptose:LPS hepto 36.2 1.6E+02 0.0035 28.2 7.9 137 279-443 179-321 (322)
227 TIGR03600 phage_DnaB phage rep 35.7 2E+02 0.0044 28.8 8.8 37 5-43 196-233 (421)
228 PRK10422 lipopolysaccharide co 35.5 1.6E+02 0.0034 28.7 7.8 97 278-390 183-287 (352)
229 PF02016 Peptidase_S66: LD-car 35.5 39 0.00085 31.9 3.4 75 291-394 46-122 (284)
230 TIGR02370 pyl_corrinoid methyl 34.9 73 0.0016 28.2 4.8 59 3-71 84-142 (197)
231 PF00551 Formyl_trans_N: Formy 34.6 3E+02 0.0066 23.7 9.7 35 4-41 1-35 (181)
232 cd01424 MGS_CPS_II Methylglyox 34.3 2.2E+02 0.0048 22.1 7.6 84 15-139 10-100 (110)
233 PF02353 CMAS: Mycolic acid cy 34.2 9.9 0.00021 35.7 -0.9 40 371-410 70-111 (273)
234 cd01974 Nitrogenase_MoFe_beta 34.0 4.1E+02 0.0088 26.9 10.6 26 112-140 376-401 (435)
235 PHA02542 41 41 helicase; Provi 33.8 1.1E+02 0.0024 31.4 6.4 37 5-43 192-228 (473)
236 PF07429 Glyco_transf_56: 4-al 33.7 96 0.0021 30.0 5.5 83 347-445 246-334 (360)
237 PRK14099 glycogen synthase; Pr 33.7 67 0.0015 33.0 5.0 72 362-450 369-452 (485)
238 PF07894 DUF1669: Protein of u 33.6 70 0.0015 30.0 4.5 46 94-142 132-182 (284)
239 COG0552 FtsY Signal recognitio 33.4 2.4E+02 0.0051 27.3 8.0 36 5-42 141-176 (340)
240 KOG3339 Predicted glycosyltran 32.9 3.1E+02 0.0067 24.0 7.8 24 7-30 41-64 (211)
241 PF13499 EF-hand_7: EF-hand do 32.8 68 0.0015 22.0 3.5 53 425-479 13-65 (66)
242 COG1484 DnaC DNA replication p 32.7 78 0.0017 29.3 4.8 37 4-42 106-142 (254)
243 cd00561 CobA_CobO_BtuR ATP:cor 32.6 3.1E+02 0.0068 23.3 10.0 37 5-41 4-41 (159)
244 PF02702 KdpD: Osmosensitive K 32.4 90 0.0019 27.7 4.7 40 3-42 5-44 (211)
245 cd07038 TPP_PYR_PDC_IPDC_like 32.4 58 0.0012 27.7 3.6 27 365-391 60-92 (162)
246 PRK12475 thiamine/molybdopteri 32.3 2.1E+02 0.0046 27.8 7.9 32 2-39 23-54 (338)
247 cd03115 SRP The signal recogni 32.2 3.1E+02 0.0068 23.2 10.7 35 6-42 3-37 (173)
248 cd01141 TroA_d Periplasmic bin 32.1 67 0.0015 27.8 4.1 29 113-141 69-99 (186)
249 PF03853 YjeF_N: YjeF-related 32.0 99 0.0021 26.5 5.1 37 4-41 26-62 (169)
250 PRK10416 signal recognition pa 31.6 4.6E+02 0.0099 25.2 10.0 37 4-42 115-151 (318)
251 PF06506 PrpR_N: Propionate ca 31.2 61 0.0013 28.0 3.6 42 96-145 113-154 (176)
252 PRK10916 ADP-heptose:LPS hepto 31.1 2E+02 0.0043 27.9 7.7 96 277-390 179-286 (348)
253 PRK08760 replicative DNA helic 30.5 61 0.0013 33.2 4.1 37 5-43 231-268 (476)
254 PRK07710 acetolactate synthase 30.5 2.2E+02 0.0047 30.0 8.3 75 296-391 19-111 (571)
255 TIGR01918 various_sel_PB selen 29.7 2.9E+02 0.0063 27.6 8.1 30 112-141 75-114 (431)
256 PRK09165 replicative DNA helic 29.6 4.7E+02 0.01 27.0 10.3 37 5-43 219-270 (497)
257 PF14165 YtzH: YtzH-like prote 29.3 1.6E+02 0.0035 22.0 4.9 36 431-467 28-63 (87)
258 PRK05920 aromatic acid decarbo 29.2 96 0.0021 27.6 4.5 36 4-42 4-39 (204)
259 COG2159 Predicted metal-depend 29.0 2.1E+02 0.0044 27.2 7.1 94 265-380 115-210 (293)
260 PRK04885 ppnK inorganic polyph 29.0 93 0.002 29.0 4.6 26 366-391 37-68 (265)
261 KOG3062 RNA polymerase II elon 29.0 1.1E+02 0.0024 27.7 4.7 35 5-39 3-37 (281)
262 PRK14974 cell division protein 28.9 4.4E+02 0.0095 25.6 9.4 36 5-42 142-177 (336)
263 PRK09620 hypothetical protein; 28.8 78 0.0017 28.8 4.0 40 1-42 1-52 (229)
264 PRK14092 2-amino-4-hydroxy-6-h 28.8 1.2E+02 0.0027 25.8 5.0 31 276-306 5-35 (163)
265 COG1737 RpiR Transcriptional r 28.7 1.8E+02 0.0038 27.4 6.6 93 266-398 121-218 (281)
266 PRK06276 acetolactate synthase 28.6 2.6E+02 0.0056 29.5 8.5 27 365-391 64-96 (586)
267 TIGR02193 heptsyl_trn_I lipopo 28.5 2.6E+02 0.0056 26.6 7.9 38 5-42 1-38 (319)
268 cd00984 DnaB_C DnaB helicase C 28.5 4.4E+02 0.0095 23.7 10.3 37 5-43 15-52 (242)
269 PRK12595 bifunctional 3-deoxy- 28.4 5.6E+02 0.012 25.2 10.1 128 281-443 120-250 (360)
270 cd03466 Nitrogenase_NifN_2 Nit 28.3 4.7E+02 0.01 26.4 9.9 26 112-140 371-396 (429)
271 TIGR00665 DnaB replicative DNA 28.2 2.5E+02 0.0055 28.2 8.1 37 5-43 197-234 (434)
272 PRK05636 replicative DNA helic 28.2 1.4E+02 0.003 31.0 6.1 37 5-43 267-304 (505)
273 cd03412 CbiK_N Anaerobic cobal 27.8 1.1E+02 0.0024 24.8 4.4 36 279-314 2-39 (127)
274 PRK06731 flhF flagellar biosyn 27.7 4.7E+02 0.01 24.5 9.0 37 4-42 76-112 (270)
275 COG0299 PurN Folate-dependent 27.6 1.5E+02 0.0031 26.2 5.1 30 112-141 28-57 (200)
276 PF01210 NAD_Gly3P_dh_N: NAD-d 27.6 37 0.0008 28.7 1.6 31 5-42 1-31 (157)
277 COG1797 CobB Cobyrinic acid a, 27.5 2.7E+02 0.0059 28.0 7.6 27 9-35 7-33 (451)
278 COG1663 LpxK Tetraacyldisaccha 27.4 1.3E+02 0.0028 29.0 5.3 30 9-40 55-84 (336)
279 PRK07952 DNA replication prote 27.2 2.6E+02 0.0057 25.7 7.2 34 5-40 101-134 (244)
280 PF03308 ArgK: ArgK protein; 27.2 4.1E+02 0.0088 24.8 8.2 38 4-41 30-67 (266)
281 TIGR02852 spore_dpaB dipicolin 27.1 79 0.0017 27.7 3.6 36 5-42 2-37 (187)
282 TIGR02990 ectoine_eutA ectoine 27.0 3.1E+02 0.0067 25.1 7.6 48 17-71 105-152 (239)
283 COG2327 WcaK Polysaccharide py 26.9 1.4E+02 0.0031 29.4 5.6 77 357-451 280-357 (385)
284 PRK03359 putative electron tra 26.6 1.3E+02 0.0027 28.0 5.0 31 113-143 112-148 (256)
285 TIGR02398 gluc_glyc_Psyn gluco 26.5 3.3E+02 0.0071 28.1 8.4 105 349-481 365-481 (487)
286 cd07037 TPP_PYR_MenD Pyrimidin 26.5 44 0.00095 28.5 1.9 25 367-391 63-93 (162)
287 PRK07773 replicative DNA helic 26.4 5.4E+02 0.012 28.9 10.7 37 5-43 219-256 (886)
288 PF01081 Aldolase: KDPG and KH 26.2 4.6E+02 0.01 23.2 9.3 33 113-145 80-112 (196)
289 PRK10353 3-methyl-adenine DNA 25.9 2.5E+02 0.0054 24.6 6.4 87 389-476 22-119 (187)
290 PRK06029 3-octaprenyl-4-hydrox 25.9 1.3E+02 0.0027 26.4 4.6 35 5-42 3-38 (185)
291 PRK12342 hypothetical protein; 25.3 1.4E+02 0.0031 27.6 5.1 31 113-143 109-145 (254)
292 PRK06249 2-dehydropantoate 2-r 25.3 91 0.002 29.8 4.1 34 1-41 3-36 (313)
293 PF02606 LpxK: Tetraacyldisacc 25.0 3.4E+02 0.0074 26.2 7.9 31 9-41 43-73 (326)
294 TIGR02095 glgA glycogen/starch 24.9 1.1E+02 0.0023 31.3 4.7 39 371-411 351-390 (473)
295 PLN02859 glutamine-tRNA ligase 24.8 1.3E+02 0.0027 32.8 5.2 52 429-480 119-178 (788)
296 PRK04940 hypothetical protein; 24.8 2E+02 0.0043 25.1 5.6 32 113-144 60-92 (180)
297 PRK02155 ppnK NAD(+)/NADH kina 24.8 1.2E+02 0.0026 28.8 4.6 28 362-391 63-94 (291)
298 PRK00771 signal recognition pa 24.7 5.5E+02 0.012 26.0 9.5 36 5-42 97-132 (437)
299 TIGR00521 coaBC_dfp phosphopan 24.6 1.1E+02 0.0023 30.5 4.4 39 1-42 1-39 (390)
300 TIGR02482 PFKA_ATP 6-phosphofr 24.4 6.3E+02 0.014 24.1 9.4 135 285-440 66-237 (301)
301 COG0205 PfkA 6-phosphofructoki 24.4 2.4E+02 0.0053 27.5 6.6 125 266-396 56-200 (347)
302 PRK11253 ldcA L,D-carboxypepti 24.2 1.5E+02 0.0032 28.4 5.1 28 290-318 48-77 (305)
303 PRK14077 pnk inorganic polypho 24.2 1.2E+02 0.0027 28.6 4.5 29 361-391 63-95 (287)
304 PRK12726 flagellar biosynthesi 24.0 6.8E+02 0.015 25.0 9.6 36 5-42 208-243 (407)
305 PLN02929 NADH kinase 24.0 87 0.0019 29.8 3.5 65 362-444 64-137 (301)
306 PF03403 PAF-AH_p_II: Platelet 24.0 65 0.0014 31.9 2.8 29 4-32 100-128 (379)
307 PRK05579 bifunctional phosphop 23.9 1.2E+02 0.0027 30.2 4.8 39 1-42 4-42 (399)
308 TIGR00421 ubiX_pad polyprenyl 23.8 99 0.0021 26.9 3.6 34 6-42 2-35 (181)
309 smart00096 UTG Uteroglobin. 23.8 2.4E+02 0.0052 20.2 4.8 49 430-482 17-65 (69)
310 TIGR00725 conserved hypothetic 23.8 3.8E+02 0.0082 22.7 7.1 38 355-392 83-123 (159)
311 PF01591 6PF2K: 6-phosphofruct 23.6 3.8E+02 0.0081 24.3 7.3 112 3-141 12-129 (222)
312 PF07991 IlvN: Acetohydroxy ac 23.5 59 0.0013 27.7 2.0 29 2-35 3-31 (165)
313 TIGR01498 folK 2-amino-4-hydro 23.5 81 0.0017 25.7 2.8 29 281-309 1-29 (127)
314 COG1043 LpxA Acyl-[acyl carrie 23.3 2.2E+02 0.0047 26.0 5.6 47 428-482 204-253 (260)
315 KOG1111 N-acetylglucosaminyltr 23.1 3.8E+02 0.0082 26.3 7.4 86 290-390 207-301 (426)
316 COG0299 PurN Folate-dependent 23.0 2.2E+02 0.0048 25.1 5.5 83 280-392 53-136 (200)
317 PRK05748 replicative DNA helic 22.8 3.8E+02 0.0082 27.2 8.2 37 5-43 205-242 (448)
318 COG1448 TyrB Aspartate/tyrosin 22.8 7.5E+02 0.016 24.4 10.2 34 429-465 298-331 (396)
319 TIGR01470 cysG_Nterm siroheme 22.7 5.4E+02 0.012 22.8 9.4 94 357-462 64-165 (205)
320 PRK13789 phosphoribosylamine-- 22.5 3.5E+02 0.0075 27.3 7.7 28 1-33 1-29 (426)
321 PLN02948 phosphoribosylaminoim 22.4 4.5E+02 0.0097 27.8 8.7 144 278-465 410-562 (577)
322 TIGR01182 eda Entner-Doudoroff 22.4 5.6E+02 0.012 22.8 12.3 27 113-139 80-106 (204)
323 COG2861 Uncharacterized protei 22.3 2E+02 0.0043 26.3 5.1 38 95-139 138-178 (250)
324 COG0052 RpsB Ribosomal protein 21.9 2E+02 0.0043 26.4 5.1 33 113-145 156-190 (252)
325 cd07035 TPP_PYR_POX_like Pyrim 21.8 1.6E+02 0.0035 24.5 4.6 26 367-392 62-93 (155)
326 TIGR03878 thermo_KaiC_2 KaiC d 21.8 6.4E+02 0.014 23.3 9.0 37 5-43 38-74 (259)
327 PF01497 Peripla_BP_2: Peripla 21.8 1.2E+02 0.0027 27.1 4.1 32 113-144 60-93 (238)
328 PRK07206 hypothetical protein; 21.6 4.3E+02 0.0094 26.3 8.3 25 112-136 69-95 (416)
329 cd01968 Nitrogenase_NifE_I Nit 21.4 6.9E+02 0.015 24.9 9.7 24 113-139 356-379 (410)
330 TIGR00853 pts-lac PTS system, 21.4 2.6E+02 0.0056 21.3 5.1 35 1-35 1-35 (95)
331 cd03818 GT1_ExpC_like This fam 21.4 2.6E+02 0.0056 27.6 6.6 26 292-317 9-34 (396)
332 PF01372 Melittin: Melittin; 21.3 15 0.00032 20.0 -1.2 17 373-389 1-17 (26)
333 PRK13982 bifunctional SbtC-lik 21.3 1.3E+02 0.0028 30.7 4.3 39 2-42 255-305 (475)
334 PRK06904 replicative DNA helic 21.3 4.4E+02 0.0096 27.0 8.2 37 5-43 223-260 (472)
335 PRK03372 ppnK inorganic polyph 21.1 1.8E+02 0.0038 27.9 5.0 54 361-444 71-128 (306)
336 PRK12377 putative replication 20.9 4.4E+02 0.0095 24.3 7.4 34 5-40 103-136 (248)
337 PF10087 DUF2325: Uncharacteri 20.9 1.8E+02 0.0039 22.1 4.2 34 113-146 48-87 (97)
338 PRK04539 ppnK inorganic polyph 20.8 2.3E+02 0.0049 27.0 5.6 53 362-444 68-124 (296)
339 COG0503 Apt Adenine/guanine ph 20.6 2.2E+02 0.0048 24.7 5.1 29 112-140 52-82 (179)
340 TIGR01283 nifE nitrogenase mol 20.4 8.1E+02 0.017 24.9 10.0 26 112-140 394-419 (456)
341 PRK05632 phosphate acetyltrans 20.3 1.1E+03 0.024 25.5 11.9 37 1-40 1-38 (684)
342 COG1647 Esterase/lipase [Gener 20.1 6.7E+02 0.014 22.8 9.8 29 5-33 16-44 (243)
343 cd01143 YvrC Periplasmic bindi 20.1 1.6E+02 0.0035 25.4 4.4 29 113-141 60-89 (195)
No 1
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-74 Score=580.14 Aligned_cols=476 Identities=55% Similarity=0.975 Sum_probs=353.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchh--hhhhhhhhccCCCCCeEEEECCCCCCCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTV--ATYTQSLAASNLSSRIKFINLPDDQPDKEST 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~ 80 (485)
|.||+++|+|++||++||++||+.|+.+|++++|||++|+..+.... ....++.. ....++|+|+.++++..++. .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~-~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLS-ASSEDRLRYEVISAGDQPTT-E 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcc-cCCCCCeEEEEcCCCCCCcc-c
Confidence 45999999999999999999999999998667899999885432110 11122211 01123699999987653221 1
Q ss_pred ChHhHHHHHHHhhhhhHHHHHHhhhhcC--CCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhh
Q 045029 81 PPKRFFGHFVESKKPHVKEVVANLTDES--PDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALH 158 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (485)
.. .+..+...+...+++.++++.+.. +...+++|||+|.+++|+..+|+++|||+++|++++++.++.+.+++...
T Consensus 80 ~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 80 DP--TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred ch--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 11 233344455666677777664321 01123589999999999999999999999999999999998888775543
Q ss_pred ccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCCCC
Q 045029 159 DEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKT 238 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~ 238 (485)
.....+..++.+...+..+|+++.+++..+++..+.....+..+.+..+...+++|+++||+++||..+...+.+.....
T Consensus 158 ~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~ 237 (481)
T PLN02554 158 DEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDL 237 (481)
T ss_pred cccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCC
Confidence 22111100111112334689985467777888665544445566677777888999999999999999999998743245
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCC
Q 045029 239 PPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPP 318 (485)
Q Consensus 239 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~ 318 (485)
|++++|||++....... . .....+++|.+|||++++++||||||||+...+.+++++++.||+.++++|||++++..
T Consensus 238 ~~v~~vGpl~~~~~~~~--~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~ 314 (481)
T PLN02554 238 PPVYPVGPVLHLENSGD--D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRAS 314 (481)
T ss_pred CCEEEeCCCcccccccc--c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 78999999954322110 0 01234578999999998889999999999999999999999999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchh
Q 045029 319 SKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQF 398 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 398 (485)
.......+.+..+....+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||+||+++||+.
T Consensus 315 ~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~ 394 (481)
T PLN02554 315 PNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKF 394 (481)
T ss_pred ccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchh
Confidence 10000000000111234699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 399 NAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 399 na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
||+++++.+|+|+.++..+........++.+++++|.++|+++|+++++||+||+++++++++++.+||||+.++++||+
T Consensus 395 Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~ 474 (481)
T PLN02554 395 NAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQ 474 (481)
T ss_pred hHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99776777899999864210000000012689999999999999646899999999999999999999999999999999
Q ss_pred HHhhcCC
Q 045029 479 DFLDNIA 485 (485)
Q Consensus 479 ~~~~~~~ 485 (485)
++++||+
T Consensus 475 ~~~~~~~ 481 (481)
T PLN02554 475 DVTKNIA 481 (481)
T ss_pred HHHhhCC
Confidence 9999986
No 2
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.7e-74 Score=568.60 Aligned_cols=459 Identities=43% Similarity=0.803 Sum_probs=345.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCC-CC--
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQP-DK-- 77 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~-~~-- 77 (485)
|+++|++|+|+|++||++|+++||+.|+.+|-.++||+++++.+++.......+... ....+++|..+++... +.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIA--SSQPFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhcc--CCCCCeEEEEeCCCCCCCccc
Confidence 899999999999999999999999999999722448899988654321122222211 1123699999996432 21
Q ss_pred CCCChHhHHHHHHHhhhhhHHHHHHhhhhcC-CCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhh
Q 045029 78 ESTPPKRFFGHFVESKKPHVKEVVANLTDES-PDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQA 156 (485)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (485)
...+....+..+...+.+.+++.++++++.. +...+++|||+|.+++|+..+|+++|||.++|++++++.++.+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 1113333333344445444455555554421 011245999999999999999999999999999999988888777654
Q ss_pred hhcccc-ccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCC
Q 045029 157 LHDEEN-TTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGK 235 (485)
Q Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~ 235 (485)
...... .+ ++..+....+|+++.+++..+++.++.....+..+.+.....++++++++||+++||..++..+...
T Consensus 159 ~~~~~~~~~---~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~- 234 (468)
T PLN02207 159 RHSKDTSVF---VRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE- 234 (468)
T ss_pred ccccccccC---cCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc-
Confidence 321100 00 0111233568998446888888876643333455556666777899999999999999998888541
Q ss_pred CCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEc
Q 045029 236 SKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLR 315 (485)
Q Consensus 236 ~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~ 315 (485)
+..|++++|||++....... .......+++|.+|||+++++++|||||||...++.+++++++.||+.++++|||+++
T Consensus 235 ~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r 312 (468)
T PLN02207 235 QNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLR 312 (468)
T ss_pred cCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEe
Confidence 24578999999975322100 0000112368999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeecccccc
Q 045029 316 RPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAE 395 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~D 395 (485)
.... ...+.+|++|++++++|+++++|+||.+||+|+++++|||||||||++||+++|||||+||+++|
T Consensus 313 ~~~~-----------~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~D 381 (468)
T PLN02207 313 TEEV-----------TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAE 381 (468)
T ss_pred CCCc-----------cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcccc
Confidence 5310 01235899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhhhcCCChHHHHH
Q 045029 396 QQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEH-NSEMRKRVKEMSEKARKALSDGGSSFSSMG 474 (485)
Q Consensus 396 Q~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~ 474 (485)
|+.||+++++.+|+|+++..++..+. ++.++.++|.++|+++|++ +++||+||+++++++++++.+||||+.+++
T Consensus 382 Q~~Na~~~~~~~gvGv~~~~~~~~~~----~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~ 457 (468)
T PLN02207 382 QQLNAFLMVKELKLAVELKLDYRVHS----DEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIE 457 (468)
T ss_pred chhhHHHHHHHhCceEEEeccccccc----CCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999998987899998853211110 1256999999999999963 469999999999999999999999999999
Q ss_pred HHHHHHhh
Q 045029 475 RLIDDFLD 482 (485)
Q Consensus 475 ~~~~~~~~ 482 (485)
+||+++..
T Consensus 458 ~~v~~~~~ 465 (468)
T PLN02207 458 KFIHDVIG 465 (468)
T ss_pred HHHHHHHh
Confidence 99999874
No 3
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-72 Score=566.42 Aligned_cols=466 Identities=48% Similarity=0.841 Sum_probs=346.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRL-SVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKES 79 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 79 (485)
|+++||+++|+|++||++||++||+.|+.+|..+ .||+++++.+.......+.+... ...++|+|+.+++...+++.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI--ASEPRIRLVTLPEVQDPPPM 78 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc--cCCCCeEEEECCCCCCCccc
Confidence 7899999999999999999999999999998554 37777765433211112222211 11236999999976533221
Q ss_pred C----ChHhHHHHHHHhhhhhHHHHHHhhhhcC-CCCC-CccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHH
Q 045029 80 T----PPKRFFGHFVESKKPHVKEVVANLTDES-PDSP-RLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLR 153 (485)
Q Consensus 80 ~----~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~-~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 153 (485)
+ .....+..+...+...+++.++++.... .... +++|||+|.+++|+..+|+++|||.++|++++++.++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 1 1222344455556666777777764321 0011 46999999999999999999999999999999988888776
Q ss_pred HhhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhC
Q 045029 154 VQALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSD 233 (485)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~ 233 (485)
++........... ..+.+.+..+||++..++..+++..+.+...+..+.+..+...+++++++|||++||+.+...++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 159 LPERHRKTASEFD-LSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred HHHhccccccccc-cCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 6542211100000 001122345888854577777776554333344555666777889999999999999999988865
Q ss_pred CCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEE
Q 045029 234 GKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWS 313 (485)
Q Consensus 234 ~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~ 313 (485)
.....|++++|||++....... . .......++|.+|||.+++++||||||||+...+.+++.+++.||+.++++|||+
T Consensus 238 ~~~~~p~v~~vGpl~~~~~~~~-~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 238 LPENYPPVYPVGPILSLKDRTS-P-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred hcccCCeeEEeccccccccccC-C-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 2112478999999975322100 0 0001124689999999988899999999999899999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeecccc
Q 045029 314 LRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY 393 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~ 393 (485)
++..... .......+|++|.+++++++++++|+||.+||+|+++++|||||||||++||+++|||||+||++
T Consensus 316 ~~~~~~~--------~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 316 IRTNPAE--------YASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred EecCccc--------ccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9864100 00012348999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHH
Q 045029 394 AEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSM 473 (485)
Q Consensus 394 ~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~ 473 (485)
+||+.||+++++.+|+|+.+...+..+ .++.+++++|+++|+++|.++++||+||+++++.+++++.+||||+.++
T Consensus 388 ~DQ~~na~~~~~~~g~g~~~~~~~~~~----~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 388 AEQQLNAFTMVKELGLAVELRLDYVSA----YGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred ccchhhHHHHHHHhCeeEEeecccccc----cCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999988777789999986421000 0025799999999999997445899999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 045029 474 GRLIDDFLDN 483 (485)
Q Consensus 474 ~~~~~~~~~~ 483 (485)
++||++|...
T Consensus 464 ~~~v~~i~~~ 473 (475)
T PLN02167 464 KRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 4
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.9e-72 Score=560.84 Aligned_cols=460 Identities=41% Similarity=0.769 Sum_probs=346.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC--CeEEEEEEcCCCCCchhhhhhhhhhc--cCCCCCeEEEECCCCCCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDD--RLSVTVLIMKLPHDNTVATYTQSLAA--SNLSSRIKFINLPDDQPD 76 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH--~v~Vt~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~f~~l~~~~~~ 76 (485)
|+|.||+++|+|++||++|+++||+.|+.||+ ++.|||++++..... +......... .....++.|+.+++...|
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPE-SASEVAAHVRREAASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccc-hhHHHHHHHhhcccCCCCEEEEECCCCCCC
Confidence 89999999999999999999999999999973 366999998754331 1111121110 011126999999987655
Q ss_pred CCCCChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhh
Q 045029 77 KESTPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQA 156 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (485)
++.++...++..+...+.+.+++.++.+ ..+++|||+|.+++|+..+|+++|||++.|++++++.++++.+++.
T Consensus 80 ~~~e~~~~~~~~~~~~~~~~l~~~L~~l------~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 80 TDAAGVEEFISRYIQLHAPHVRAAIAGL------SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred CccccHHHHHHHHHHhhhHHHHHHHHhc------CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 4443333444444444455555555443 1357999999999999999999999999999999998888887754
Q ss_pred hhccccccccccCCCCCccccCCCCCCCCCCCCCccccCcc--HHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCC
Q 045029 157 LHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKE--WAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDG 234 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 234 (485)
.......+ +.....+..+||++ .++..+++..+.... .+..+....+...+++++++|||++||+.+...+++.
T Consensus 154 ~~~~~~~~---~~~~~~~~~iPGlp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 154 LDEEVAVE---FEEMEGAVDVPGLP-PVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred hcccccCc---ccccCcceecCCCC-CCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 32111000 11101223588885 577788886554322 2444555566677889999999999999999888763
Q ss_pred C--C--CCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCce
Q 045029 235 K--S--KTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRF 310 (485)
Q Consensus 235 ~--~--~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~ 310 (485)
. + ..++++.|||++...... .....+++|.+|||+++++|||||||||+...+.+++.+++.||+.++++|
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~~~-----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~f 304 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAFTP-----PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRF 304 (480)
T ss_pred cccccCCCCceEEeCCCccccccC-----CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCE
Confidence 1 0 135799999997432110 012346789999999988999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcEee
Q 045029 311 LWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIAT 389 (485)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~ 389 (485)
||+++.....+.. .+.+ .+....+|++|.++++++++++ +|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 305 lWv~~~~~~~~~~-~~~~-~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~ 382 (480)
T PLN00164 305 LWVLRGPPAAGSR-HPTD-ADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAP 382 (480)
T ss_pred EEEEcCCcccccc-cccc-cchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEe
Confidence 9999864211100 0000 1122358999999999999888 99999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhhhc
Q 045029 390 WPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN----SEMRKRVKEMSEKARKALSD 465 (485)
Q Consensus 390 ~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~----~~~r~~a~~~~~~~~~~~~~ 465 (485)
||+++||+.||+++++.||+|+.+..+.+ + ++.++.++|+++|+++|.+. .++|+||+++++++++++.+
T Consensus 383 ~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~-~-----~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~ 456 (480)
T PLN00164 383 WPLYAEQHLNAFELVADMGVAVAMKVDRK-R-----DNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEE 456 (480)
T ss_pred CCccccchhHHHHHHHHhCeEEEeccccc-c-----CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998887899999863210 0 12579999999999999731 35999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhcC
Q 045029 466 GGSSFSSMGRLIDDFLDNI 484 (485)
Q Consensus 466 gg~~~~~~~~~~~~~~~~~ 484 (485)
||||++++++||++++++.
T Consensus 457 gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 457 GGSSYAALQRLAREIRHGA 475 (480)
T ss_pred CCcHHHHHHHHHHHHHhcc
Confidence 9999999999999998764
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.6e-72 Score=554.63 Aligned_cols=436 Identities=27% Similarity=0.461 Sum_probs=333.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCC-CC-
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKE-ST- 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~-~~- 80 (485)
+.||+++|+|++||++||++||+.|+.||+. |||++|+.++.. .. ....+++|..++++. |++ ..
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~--VT~v~T~~n~~~------~~----~~~~~i~~~~ip~gl-p~~~~~~ 73 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFS--ITIAQTKFNYFS------PS----DDFTDFQFVTIPESL-PESDFKN 73 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCE--EEEEeCcccccc------cc----cCCCCeEEEeCCCCC-Ccccccc
Confidence 3599999999999999999999999999966 889998843211 00 111368999998754 432 22
Q ss_pred -ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhc
Q 045029 81 -PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHD 159 (485)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 159 (485)
....++..+...+...+++.++++..+ ...+++|||+|.+++|+..+|+++|||.+.|++++++.+.++.+++....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~--~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 151 (451)
T PLN02410 74 LGPIEFLHKLNKECQVSFKDCLGQLVLQ--QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYA 151 (451)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHHHHhc--cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHh
Confidence 222333334445555666777665432 23467999999999999999999999999999999988877776544322
Q ss_pred ccc-ccccccCCCCCccccCCCCCCCCCCCCCccccCc-c-HHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCC
Q 045029 160 EEN-TTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK-E-WAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKS 236 (485)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 236 (485)
.+. .+..... .+....+|+++ +++..+++...... . ....+.. .....+++++++|||++||+.++..+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~iPg~~-~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-- 226 (451)
T PLN02410 152 NNVLAPLKEPK-GQQNELVPEFH-PLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQ-- 226 (451)
T ss_pred ccCCCCccccc-cCccccCCCCC-CCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhc--
Confidence 110 0100000 11223578875 56666777543221 1 1222222 22346788999999999999999999763
Q ss_pred CCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcC
Q 045029 237 KTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRR 316 (485)
Q Consensus 237 ~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~ 316 (485)
..+++++|||++....... .......+|.+|||++++++||||||||...++.+++++++.||+.++++|||+++.
T Consensus 227 ~~~~v~~vGpl~~~~~~~~----~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~ 302 (451)
T PLN02410 227 LQIPVYPIGPLHLVASAPT----SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRP 302 (451)
T ss_pred cCCCEEEecccccccCCCc----cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 3357999999975321100 001224578999999988999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccc
Q 045029 317 PPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQ 396 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ 396 (485)
+...+ .+....+|++|++++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 303 ~~~~~--------~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 374 (451)
T PLN02410 303 GSVRG--------SEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQ 374 (451)
T ss_pred Ccccc--------cchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccC
Confidence 32110 0111248999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhhcCCChHHHHH
Q 045029 397 QFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARKALSDGGSSFSSMG 474 (485)
Q Consensus 397 ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~~~~~gg~~~~~~~ 474 (485)
+.||+++++.||+|+.+. . .++.++|+++|+++|.++ ++||+||+++++++++++.+||||+.+++
T Consensus 375 ~~na~~~~~~~~~G~~~~-~-----------~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~ 442 (451)
T PLN02410 375 KVNARYLECVWKIGIQVE-G-----------DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLE 442 (451)
T ss_pred HHHHHHHHHHhCeeEEeC-C-----------cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999998889999986 2 689999999999999732 37999999999999999999999999999
Q ss_pred HHHHHHhh
Q 045029 475 RLIDDFLD 482 (485)
Q Consensus 475 ~~~~~~~~ 482 (485)
+||+++.+
T Consensus 443 ~fv~~~~~ 450 (451)
T PLN02410 443 EFVHFMRT 450 (451)
T ss_pred HHHHHHHh
Confidence 99999864
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.2e-71 Score=550.14 Aligned_cols=432 Identities=24% Similarity=0.440 Sum_probs=329.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC-C
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST-P 81 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~-~ 81 (485)
+.||+++|+|++||++|+++||+.|+++|+. ||+++++..+ ....... ....+++|+.++++. +++.. +
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~--VT~vtt~~~~-----~~~~~~~--~~~~~i~~v~lp~g~-~~~~~~~ 75 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFE--PVVITPEFIH-----RRISATL--DPKLGITFMSISDGQ-DDDPPRD 75 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCE--EEEEeCcchh-----hhhhhcc--CCCCCEEEEECCCCC-CCCcccc
Confidence 5699999999999999999999999999977 8899987321 1111111 112369999998754 22211 2
Q ss_pred hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhccc
Q 045029 82 PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEE 161 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (485)
....+..+...+.+.++++++++... .+++|||+|.++.|+..+|+++|||.++|++++++.++.+.+++......
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~~----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDED----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCC----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 22222222223455566666655321 24689999999999999999999999999999998888777665433221
Q ss_pred cccccccCCCC--C-ccccCCCCCCCCCCCCCccccCc----cHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCC
Q 045029 162 NTTITELKDSD--A-VLEVPGLVNSVPAKVWPSVVFNK----EWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDG 234 (485)
Q Consensus 162 ~~~~~~~~~~~--~-~~~~P~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 234 (485)
..+. .+.+. . ...+|+++ .++..+++..+... ..+..+.+..+...++.++++|||++||+.++..+...
T Consensus 152 ~~~~--~~~~~~~~~~~~~Pg~~-~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 228 (448)
T PLN02562 152 LISE--TGCPRQLEKICVLPEQP-LLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQAS 228 (448)
T ss_pred cccc--ccccccccccccCCCCC-CCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhh
Confidence 1110 01111 1 12578875 57777888755321 22556667777777889999999999999888776542
Q ss_pred --CCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcc-cCCHHHHHHHHHHHHhcCCceE
Q 045029 235 --KSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWG-SFGEDQVKEIACALEQSGHRFL 311 (485)
Q Consensus 235 --~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~-~~~~~~~~~~~~al~~~~~~~l 311 (485)
++..|++++|||++....... ........+.+|.+|||+++++++|||||||+. ..+.+++++++.||+.++++||
T Consensus 229 ~~~~~~~~v~~iGpl~~~~~~~~-~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 229 YNNGQNPQILQIGPLHNQEATTI-TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred hccccCCCEEEecCccccccccc-CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 224577999999975421100 000001234678899999988899999999986 6799999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeecc
Q 045029 312 WSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWP 391 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P 391 (485)
|+++... ...+|++|+++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 308 W~~~~~~--------------~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 308 WVLNPVW--------------REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred EEEcCCc--------------hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC
Confidence 9997531 12478899999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHH
Q 045029 392 MYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFS 471 (485)
Q Consensus 392 ~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~ 471 (485)
+++||+.||+++++.+|+|+.+. .++.++|.++|+++|+ +++||+||++++++++++ +.||||++
T Consensus 374 ~~~DQ~~na~~~~~~~g~g~~~~-------------~~~~~~l~~~v~~~l~-~~~~r~~a~~l~~~~~~~-~~gGSS~~ 438 (448)
T PLN02562 374 VAGDQFVNCAYIVDVWKIGVRIS-------------GFGQKEVEEGLRKVME-DSGMGERLMKLRERAMGE-EARLRSMM 438 (448)
T ss_pred cccchHHHHHHHHHHhCceeEeC-------------CCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc-CCCCCHHH
Confidence 99999999999987789998874 5799999999999998 789999999999999987 67899999
Q ss_pred HHHHHHHHHh
Q 045029 472 SMGRLIDDFL 481 (485)
Q Consensus 472 ~~~~~~~~~~ 481 (485)
++++||+++.
T Consensus 439 nl~~~v~~~~ 448 (448)
T PLN02562 439 NFTTLKDELK 448 (448)
T ss_pred HHHHHHHHhC
Confidence 9999999873
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.9e-71 Score=546.52 Aligned_cols=444 Identities=31% Similarity=0.560 Sum_probs=332.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCC---CC-
Q 045029 2 KKAQLVFIPSPGAGHLVSTVEVARLLV-DRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQ---PD- 76 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~---~~- 76 (485)
.|+||+++|+|++||++|+++||+.|+ ++|+. |||++|+.+. +...... ....+++++.++... .|
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~--vT~v~t~~n~-----~~~~~~~--~~~~~i~~~~lp~p~~~glp~ 74 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFH--VTVFVLETDA-----ASAQSKF--LNSTGVDIVGLPSPDISGLVD 74 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcE--EEEEeCCCch-----hhhhhcc--ccCCCceEEECCCccccCCCC
Confidence 378999999999999999999999998 68855 9999998432 1111110 112368898888632 12
Q ss_pred CCCCChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhh
Q 045029 77 KESTPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQA 156 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (485)
.+. +....+..+...+.+.+++.++++ ..+++|||+|.+++|+..+|+++|||+++|++++++.++.+.+++.
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~------~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 75 PSA-HVVTKIGVIMREAVPTLRSKIAEM------HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred CCc-cHHHHHHHHHHHhHHHHHHHHHhc------CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 221 222222233333445555555443 2368999999999999999999999999999999988877776654
Q ss_pred hhccccccccccCCCCCccccCCCCCCCCCCCCCccccCc--cHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCC
Q 045029 157 LHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK--EWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDG 234 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 234 (485)
.......+ ...++.+..+|+++ .++..+++..+... ..+..+.+......+++++++|||++||+.++..+++.
T Consensus 148 ~~~~~~~~---~~~~~~~~~iPg~~-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~ 223 (481)
T PLN02992 148 LDKDIKEE---HTVQRKPLAMPGCE-PVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDP 223 (481)
T ss_pred hccccccc---cccCCCCcccCCCC-ccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhc
Confidence 32211100 00111234578885 56777777543322 12455666667777899999999999999999988642
Q ss_pred C--C--CCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCce
Q 045029 235 K--S--KTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRF 310 (485)
Q Consensus 235 ~--~--~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~ 310 (485)
. . ..+++++|||+++.... ...+++|.+|||++++++||||||||+..++.+++++++.+|+.++++|
T Consensus 224 ~~~~~~~~~~v~~VGPl~~~~~~--------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~f 295 (481)
T PLN02992 224 KLLGRVARVPVYPIGPLCRPIQS--------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF 295 (481)
T ss_pred cccccccCCceEEecCccCCcCC--------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCE
Confidence 0 0 12569999999753221 1235679999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCC---C-CCCCCC--CCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhh
Q 045029 311 LWSLRRPPSKD---T-FEKPSD--YEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWF 383 (485)
Q Consensus 311 l~~~~~~~~~~---~-~~~~~~--~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~ 383 (485)
||+++.....+ . ++.+.+ .+++...+|++|.+++++++.++ +|+||.+||+|+++++|||||||||++||+++
T Consensus 296 lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~ 375 (481)
T PLN02992 296 VWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVG 375 (481)
T ss_pred EEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHc
Confidence 99997431000 0 000000 01122358999999999888776 99999999999999999999999999999999
Q ss_pred CCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHH
Q 045029 384 GVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARK 461 (485)
Q Consensus 384 GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~ 461 (485)
|||||+||+++||+.||+++++.+|+|+.++.. ++.++.++|+++|+++|.++ .++|+||+++++.+++
T Consensus 376 GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~---------~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~ 446 (481)
T PLN02992 376 GVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP---------KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEM 446 (481)
T ss_pred CCCEEecCccchhHHHHHHHHHHhCeeEEecCC---------CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999997668999999742 01589999999999999732 4899999999999999
Q ss_pred hh--hcCCChHHHHHHHHHHHhh
Q 045029 462 AL--SDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 462 ~~--~~gg~~~~~~~~~~~~~~~ 482 (485)
++ ++||||++++++||+++..
T Consensus 447 Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 447 SLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HhcCCCCCchHHHHHHHHHHHHH
Confidence 99 4699999999999998864
No 8
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.9e-71 Score=545.45 Aligned_cols=440 Identities=34% Similarity=0.673 Sum_probs=330.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCC-CC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRD--DRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQP-DK 77 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rG--H~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~-~~ 77 (485)
|.+.||+++|+|++||++||++||+.|+++| +.++||+++++..... .+...+... ...++++|+.+++... +.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~-~~~~~~~~~--~~~~~i~~~~lp~~~~~~~ 77 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPES-TATYISSVS--SSFPSITFHHLPAVTPYSS 77 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhh-hhhhhcccc--CCCCCeEEEEcCCCCCCCC
Confidence 7888999999999999999999999999998 5666666666531110 011111111 1123699999987642 12
Q ss_pred CCC---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHH
Q 045029 78 EST---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRV 154 (485)
Q Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 154 (485)
+.. +....+..+...+...+++.++++... .+++|||+|.+++|+..+|+++|||.++|++++++.++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 78 SSTSRHHHESLLLEILCFSNPSVHRTLFSLSRN----FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred ccccccCHHHHHHHHHHhhhHHHHHHHHhcCCC----CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 211 222233334445556666777665321 3569999999999999999999999999999999998888876
Q ss_pred hhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCcc--HHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhh
Q 045029 155 QALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKE--WAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFS 232 (485)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~ 232 (485)
+......... .... ..+..+|+++ .++..+++..+.... .+..+.+......+++++++|||++||+.++..+.
T Consensus 154 ~~~~~~~~~~--~~~~-~~~v~iPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 154 PTIDETTPGK--NLKD-IPTVHIPGVP-PMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred Hhcccccccc--cccc-CCeecCCCCC-CCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 5432110000 0000 1234678886 577788887664322 24555666667778889999999999999999886
Q ss_pred CCCCC-CCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceE
Q 045029 233 DGKSK-TPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFL 311 (485)
Q Consensus 233 ~~~~~-~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l 311 (485)
.. . .+++++|||++...... + .....+.+|.+|||++++++||||||||+..++.+++++++.||+.++++||
T Consensus 230 ~~--~~~~~v~~vGPl~~~~~~~-~---~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 230 EE--LCFRNIYPIGPLIVNGRIE-D---RNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred hc--CCCCCEEEEeeeccCcccc-c---cccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 52 2 25799999997422100 0 0011245799999999889999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcEeec
Q 045029 312 WSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~ 390 (485)
|+++...... .+..+....+|++|++++++++.++ +|+||.+||+|+++++|||||||||++||+++|||||+|
T Consensus 304 W~~r~~~~~~-----~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 304 WVVRNPPELE-----KTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAW 378 (451)
T ss_pred EEEcCCcccc-----ccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEec
Confidence 9998531000 0000112248999999998877655 999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChH
Q 045029 391 PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSF 470 (485)
Q Consensus 391 P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~ 470 (485)
|+++||+.||+++++.||+|++++... ++.++.++|+++|+++|+ +++||+||+++++.+++++.+||||+
T Consensus 379 P~~~DQ~~na~~~~~~~g~g~~l~~~~--------~~~~~~e~l~~av~~vm~-~~~~r~~a~~~~~~a~~Av~~GGSS~ 449 (451)
T PLN03004 379 PLYAEQRFNRVMIVDEIKIAISMNESE--------TGFVSSTEVEKRVQEIIG-ECPVRERTMAMKNAAELALTETGSSH 449 (451)
T ss_pred cccccchhhHHHHHHHhCceEEecCCc--------CCccCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999988789999997430 125799999999999998 78999999999999999999999987
Q ss_pred H
Q 045029 471 S 471 (485)
Q Consensus 471 ~ 471 (485)
+
T Consensus 450 ~ 450 (451)
T PLN03004 450 T 450 (451)
T ss_pred C
Confidence 4
No 9
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=7.6e-71 Score=543.35 Aligned_cols=448 Identities=31% Similarity=0.562 Sum_probs=335.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEEcCCCCCchh-hhhhhhhhccCCCCCeEEEECCCCCCC--
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDR-DDRLSVTVLIMKLPHDNTV-ATYTQSLAASNLSSRIKFINLPDDQPD-- 76 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~f~~l~~~~~~-- 76 (485)
|.++|++++|+|++||++|+++||+.|+++ | ++||+++++..+.... ....+.. ....+++|+.+++...+
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~~~~~~~~~~---~~~~~i~~~~lp~~~~~~l 75 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSPTETEAIHAA---AARTTCQITEIPSVDVDNL 75 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhhccccccccc---cCCCceEEEECCCCccccC
Confidence 788999999999999999999999999986 7 5588998774432110 0111111 01125999999865421
Q ss_pred --CCCCChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCC-eEEEechhHHHHHHHHH
Q 045029 77 --KESTPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVP-SYLFFTSGAAFLGFMLR 153 (485)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~ 153 (485)
.+. +....+..+.+.+.+.+++.++++. .+++|||+|.+++|+..+|+++||| .++|++++++.+..+++
T Consensus 76 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 76 VEPDA-TIFTKMVVKMRAMKPAVRDAVKSMK------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred CCCCc-cHHHHHHHHHHhchHHHHHHHHhcC------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 111 2222233334445555556555441 3679999999999999999999999 58888888887777777
Q ss_pred HhhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCc--cHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHh
Q 045029 154 VQALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK--EWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSF 231 (485)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 231 (485)
++......... ......+..+|+++ .++..+++..+.+. ..+..+.+..+...+++|+++|||++||+.++..+
T Consensus 149 l~~~~~~~~~~---~~~~~~~~~vPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l 224 (470)
T PLN03015 149 LPVLDTVVEGE---YVDIKEPLKIPGCK-PVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAAL 224 (470)
T ss_pred hhhhhcccccc---cCCCCCeeeCCCCC-CCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 65433210000 00111235689986 67888888655332 12445556666678899999999999999999888
Q ss_pred hCCCC----CCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcC
Q 045029 232 SDGKS----KTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSG 307 (485)
Q Consensus 232 ~~~~~----~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~ 307 (485)
++... ..+++++|||++..... ...+++|.+|||+++++|||||||||...++.+++++++.+|+.++
T Consensus 225 ~~~~~~~~~~~~~v~~VGPl~~~~~~--------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 225 REDMELNRVMKVPVYPIGPIVRTNVH--------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred HhhcccccccCCceEEecCCCCCccc--------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 75200 12569999999742110 1234579999999988999999999999999999999999999999
Q ss_pred CceEEEEcCCCCC-CCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCC
Q 045029 308 HRFLWSLRRPPSK-DTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGV 385 (485)
Q Consensus 308 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~Gv 385 (485)
++|||+++..... +... .+.++....+|++|.++++++++++ +|+||.+||+|+++++|||||||||++||+++||
T Consensus 297 ~~FlWv~r~~~~~~~~~~--~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 297 QRFVWVLRRPASYLGASS--SDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CcEEEEEecCcccccccc--ccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 9999999853110 0000 0001123458999999999999776 9999999999999999999999999999999999
Q ss_pred cEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHH
Q 045029 386 PIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEH----NSEMRKRVKEMSEKARK 461 (485)
Q Consensus 386 P~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~----~~~~r~~a~~~~~~~~~ 461 (485)
|||+||+++||+.||+++++.||+|+++.... + ++.++.++|+++|+++|.+ ..++|+||+++++++++
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~--~-----~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELP--S-----EKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccc--c-----CCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988899999995210 1 1268999999999999952 24899999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHh
Q 045029 462 ALSDGGSSFSSMGRLIDDFL 481 (485)
Q Consensus 462 ~~~~gg~~~~~~~~~~~~~~ 481 (485)
++.+||||++++++|++++.
T Consensus 448 Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 448 AWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HhcCCCcHHHHHHHHHHhcc
Confidence 99999999999999999863
No 10
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.3e-70 Score=546.57 Aligned_cols=447 Identities=23% Similarity=0.418 Sum_probs=335.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhh---hhhc---cC-CCCCeEEEECCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQ---SLAA---SN-LSSRIKFINLPDDQP 75 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~---~~~~---~~-~~~~i~f~~l~~~~~ 75 (485)
++||+++|+|++||++||++||+.|+.+|.. |||++|+..+. ... .+.+ .. ....+.|..++++.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~--vT~v~T~~~~~-----~~~~a~~~~~~~~~~~~~~~i~~~~~pdgl- 78 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLL--VTFVTTESWGK-----KMRQANKIQDGVLKPVGDGFIRFEFFEDGW- 78 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCe--EEEEeccchhh-----hhhccccccccccccCCCCeEEEeeCCCCC-
Confidence 5799999999999999999999999999855 99999984322 111 0100 00 01236676666543
Q ss_pred CCCCC---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHH
Q 045029 76 DKEST---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFML 152 (485)
Q Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 152 (485)
|++.+ +...++..+...+.+.+++.++++... ..+++|||+|.+++|+..+|+++|||.++|++++++.+++++
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQ---GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhcc---CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 43322 222233333334445555666554321 234599999999999999999999999999999999888877
Q ss_pred HHhhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCc----cHHHHHHHHHHhhcCCceEEEcChhhhhHHHH
Q 045029 153 RVQALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK----EWAEVLNQQARTFRGTKGIMVNTFEELESHAV 228 (485)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 228 (485)
+++.. ....+ ....++.+..+|+++ .++..+++.++... ..+..+.+..+...+++++++|||++||+.+.
T Consensus 156 ~~~~~--~~~~~--~~~~~~~~~~iPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 230 (480)
T PLN02555 156 HYYHG--LVPFP--TETEPEIDVQLPCMP-LLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEII 230 (480)
T ss_pred HHhhc--CCCcc--cccCCCceeecCCCC-CcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 76321 00000 011122334689986 57778888765421 12455666667777899999999999999999
Q ss_pred HHhhCCCCCCCCeEEeccccCCCCCC-CCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcC
Q 045029 229 RSFSDGKSKTPPLYPMGPILNIKGEN-YDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSG 307 (485)
Q Consensus 229 ~~~~~~~~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~ 307 (485)
..++. ..| ++.|||++...... .+.....+..+++|.+|||+++++++|||||||+..++.+++.+++.+|+.++
T Consensus 231 ~~l~~---~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~ 306 (480)
T PLN02555 231 DYMSK---LCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSG 306 (480)
T ss_pred HHHhh---CCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 88875 334 99999997532111 00000002345789999999988899999999999999999999999999999
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcE
Q 045029 308 HRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPI 387 (485)
Q Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~ 387 (485)
++|||+++.....+. .-...+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++||||
T Consensus 307 ~~flW~~~~~~~~~~--------~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~ 378 (480)
T PLN02555 307 VSFLWVMRPPHKDSG--------VEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPV 378 (480)
T ss_pred CeEEEEEecCccccc--------chhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCE
Confidence 999999984310000 001357899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhhc
Q 045029 388 ATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARKALSD 465 (485)
Q Consensus 388 v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~~~~~ 465 (485)
|++|+++||+.||+++++.||+|+++...+. ..+.++.++|.++|+++|.++ .++|+||+++++++++++.+
T Consensus 379 l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~------~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~e 452 (480)
T PLN02555 379 VCFPQWGDQVTDAVYLVDVFKTGVRLCRGEA------ENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAE 452 (480)
T ss_pred EeCCCccccHHHHHHHHHHhCceEEccCCcc------ccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999953210 012689999999999999633 48999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhc
Q 045029 466 GGSSFSSMGRLIDDFLDN 483 (485)
Q Consensus 466 gg~~~~~~~~~~~~~~~~ 483 (485)
||||+.++++||+++.++
T Consensus 453 gGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 453 GGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999999876
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-70 Score=541.72 Aligned_cols=424 Identities=25% Similarity=0.450 Sum_probs=326.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCC-CCC-
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDK-EST- 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~-~~~- 80 (485)
+.||+++|+|++||++|+++||+.|+++|+. |||++|+..+ +++.. ....+++|+.++++. |+ +.+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~--vT~v~t~~~~--------~~~~~-~~~~~i~~~~ipdgl-p~~~~~~ 72 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFK--TTHTLTTFIF--------NTIHL-DPSSPISIATISDGY-DQGGFSS 72 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCE--EEEEECCchh--------hhccc-CCCCCEEEEEcCCCC-CCccccc
Confidence 3599999999999999999999999999965 8999988422 11110 112469999998754 43 222
Q ss_pred --ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhh
Q 045029 81 --PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALH 158 (485)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (485)
+...++..+...+.+.+++.++++... ..+++|||+|.+++|+..+|+++|||.+.|++++++.+.++++. ...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~ 148 (449)
T PLN02173 73 AGSVPEYLQNFKTFGSKTVADIIRKHQST---DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YIN 148 (449)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHhhcc---CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhc
Confidence 223334433334555666666654321 12349999999999999999999999999999988776555432 111
Q ss_pred ccccccccccCCCCCccccCCCCCCCCCCCCCccccCc----cHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCC
Q 045029 159 DEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK----EWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDG 234 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 234 (485)
. .+....+|+++ .++..+++.++... ..+..+.+..+...+++++++|||++||+.+...++.
T Consensus 149 ~-----------~~~~~~~pg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~- 215 (449)
T PLN02173 149 N-----------GSLTLPIKDLP-LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK- 215 (449)
T ss_pred c-----------CCccCCCCCCC-CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-
Confidence 0 01223467875 46677887765421 1245566667777889999999999999999988864
Q ss_pred CCCCCCeEEeccccCCCC---CC-CCCCCC-C-C--CChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhc
Q 045029 235 KSKTPPLYPMGPILNIKG---EN-YDLGEG-G-A--DKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQS 306 (485)
Q Consensus 235 ~~~~p~v~~vGpl~~~~~---~~-~~~~~~-~-~--~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~ 306 (485)
. +++++|||+++... .. .+.... + + ..+++|.+|||.++++|+|||||||+...+.+++.+++.+| +
T Consensus 216 --~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 216 --V-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred --c-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 2 47999999974211 00 000000 0 1 22456999999999899999999999999999999999999 7
Q ss_pred CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-cCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCC
Q 045029 307 GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-ANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGV 385 (485)
Q Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~Gv 385 (485)
+.+|||+++... ...+|++|++++ ++|+++++|+||.+||+|+++++|||||||||++||+++||
T Consensus 291 ~~~flWvvr~~~--------------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GV 356 (449)
T PLN02173 291 NFSYLWVVRASE--------------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGV 356 (449)
T ss_pred CCCEEEEEeccc--------------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCC
Confidence 889999998531 134788999888 57789999999999999999999999999999999999999
Q ss_pred cEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhh
Q 045029 386 PIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 386 P~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~~~ 463 (485)
|||+||+++||+.||+++++.||+|+.+..++. ++.++.++|+++|+++|.++ .++|+||+++++++++++
T Consensus 357 P~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~-------~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av 429 (449)
T PLN02173 357 PMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKE-------SGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSL 429 (449)
T ss_pred CEEecCchhcchHHHHHHHHHhCceEEEeeccc-------CCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998999999975411 12579999999999999743 479999999999999999
Q ss_pred hcCCChHHHHHHHHHHHh
Q 045029 464 SDGGSSFSSMGRLIDDFL 481 (485)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~ 481 (485)
.+||||+.++++||+++.
T Consensus 430 ~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 430 SEGGSTDININTFVSKIQ 447 (449)
T ss_pred cCCCcHHHHHHHHHHHhc
Confidence 999999999999999884
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.1e-70 Score=540.33 Aligned_cols=440 Identities=23% Similarity=0.412 Sum_probs=331.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKES 79 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 79 (485)
|++.||+++|+|++||++|+++||+.|++ +|+. |||++|+.... ....... ....+++|+.++++. |++.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~--vT~v~t~~~~~---~~~~~~~---~~~~~i~~~~i~dgl-p~g~ 71 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTR--VTFATCLSVIH---RSMIPNH---NNVENLSFLTFSDGF-DDGV 71 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcE--EEEEeccchhh---hhhhccC---CCCCCEEEEEcCCCC-CCcc
Confidence 78899999999999999999999999996 6855 89999873100 0111111 112369999998643 4432
Q ss_pred C----ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHh
Q 045029 80 T----PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQ 155 (485)
Q Consensus 80 ~----~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 155 (485)
. +....+..+...+.+.+.+.++++... ..+++|||+|.+++|+..+|+++|||.+.|++++++.+++++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~---~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 72 ISNTDDVQNRLVNFERNGDKALSDFIEANLNG---DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccccccHHHHHHHHHHhccHHHHHHHHHhhcc---CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1 233344444455566677777665322 235699999999999999999999999999999999888877653
Q ss_pred hhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCc---c-HHHHHHHHHHhhcC--CceEEEcChhhhhHHHHH
Q 045029 156 ALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK---E-WAEVLNQQARTFRG--TKGIMVNTFEELESHAVR 229 (485)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~--~~~~~~~s~~~le~~~~~ 229 (485)
.. ......+|+++ .++..++|.++... . ....+.+..+...+ +.++++|||++||+.++.
T Consensus 149 ~~-------------~~~~~~iPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 214 (455)
T PLN02152 149 TG-------------NNSVFEFPNLP-SLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLT 214 (455)
T ss_pred cc-------------CCCeeecCCCC-CCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHH
Confidence 21 01234578885 56777888766431 1 13444455554432 469999999999999998
Q ss_pred HhhCCCCCCCCeEEeccccCCCC-CCCCCCC-CC-CCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhc
Q 045029 230 SFSDGKSKTPPLYPMGPILNIKG-ENYDLGE-GG-ADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQS 306 (485)
Q Consensus 230 ~~~~~~~~~p~v~~vGpl~~~~~-~~~~~~~-~~-~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~ 306 (485)
.+.. .++++|||+++... ...+.+. .. +..+.+|.+|||++++++||||||||+..++.+++++++.+|+.+
T Consensus 215 ~l~~-----~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 289 (455)
T PLN02152 215 AIPN-----IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG 289 (455)
T ss_pred hhhc-----CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 8854 26999999975321 0000000 00 122457999999998889999999999999999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCc
Q 045029 307 GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVP 386 (485)
Q Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP 386 (485)
+++|||+++...........++.. ...+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~--~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP 367 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEET--EIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVP 367 (455)
T ss_pred CCCeEEEEecCccccccccccccc--ccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCC
Confidence 999999998632100000000000 012578999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhc
Q 045029 387 IATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSD 465 (485)
Q Consensus 387 ~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~ 465 (485)
||++|+++||+.||+++++.||+|+.+..+. ++.++.++|+++|+++|+++ .+||+||+++++.+++++.+
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~--------~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ 439 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVRENS--------EGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGE 439 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeecCc--------CCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999888888875321 12579999999999999732 26999999999999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 045029 466 GGSSFSSMGRLIDDFL 481 (485)
Q Consensus 466 gg~~~~~~~~~~~~~~ 481 (485)
||||+.++++||++++
T Consensus 440 ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 440 GGSSDKNVEAFVKTLC 455 (455)
T ss_pred CCcHHHHHHHHHHHhC
Confidence 9999999999999875
No 13
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.9e-69 Score=540.23 Aligned_cols=447 Identities=27% Similarity=0.452 Sum_probs=327.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCC---CCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDD---QPDKES 79 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~---~~~~~~ 79 (485)
++||+++|+|++||++||++||+.|+.+|+. |||++|+.++ ....... ....+++++.++.. ..|++.
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~--VTfv~T~~n~-----~~~~~~~--~~~~~i~~~~lp~P~~~~lPdG~ 79 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLT--ITVLVTPKNL-----PFLNPLL--SKHPSIETLVLPFPSHPSIPSGV 79 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCE--EEEEeCCCcH-----HHHhhhc--ccCCCeeEEeCCCCCcCCCCCCC
Confidence 6799999999999999999999999999965 9999998433 2222211 11235787766532 234444
Q ss_pred CCh----HhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHh
Q 045029 80 TPP----KRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQ 155 (485)
Q Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 155 (485)
++. ...+..+..... .+.+.+.+++++ ...+++|||+|.+++|+..+|+++|||++.|++++++.+++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~a~~-~~~~~~~~~l~~--~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 80 ENVKDLPPSGFPLMIHALG-ELYAPLLSWFRS--HPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred cChhhcchhhHHHHHHHHH-HhHHHHHHHHHh--CCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 311 111222222222 223333333332 1236799999999999999999999999999999999999888765
Q ss_pred hhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCc----cHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHh
Q 045029 156 ALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNK----EWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSF 231 (485)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 231 (485)
........+ ..-..+.....+|+++ .++..+++..+... .....+.+..+......++++|||++||+.++..+
T Consensus 157 ~~~~~~~~~-~~~~~~~~~~~iPg~~-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 234 (477)
T PLN02863 157 REMPTKINP-DDQNEILSFSKIPNCP-KYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHL 234 (477)
T ss_pred hcccccccc-cccccccccCCCCCCC-CcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHH
Confidence 321110000 0000000112467775 57777777654321 12333444444455778999999999999999998
Q ss_pred hCCCCCC-CCeEEeccccCCCCCCC---CCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcC
Q 045029 232 SDGKSKT-PPLYPMGPILNIKGENY---DLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSG 307 (485)
Q Consensus 232 ~~~~~~~-p~v~~vGpl~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~ 307 (485)
+.. .. +++++|||+++...... ..+......+++|.+|||.+++++||||||||+...+.+++++++.+|+.++
T Consensus 235 ~~~--~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~ 312 (477)
T PLN02863 235 KKE--LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSG 312 (477)
T ss_pred Hhh--cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCC
Confidence 763 22 57999999975431100 0000001135689999999988899999999999999999999999999999
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCc
Q 045029 308 HRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVP 386 (485)
Q Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP 386 (485)
++|||+++..... ......+|++|.+++.++++++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 313 ~~flw~~~~~~~~---------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP 383 (477)
T PLN02863 313 VHFIWCVKEPVNE---------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVP 383 (477)
T ss_pred CcEEEEECCCccc---------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCC
Confidence 9999999854210 0001248899998887766665 99999999999999999999999999999999999
Q ss_pred EeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcC
Q 045029 387 IATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDG 466 (485)
Q Consensus 387 ~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~g 466 (485)
||+||+++||+.||+++++.||+|+++..+ + ++.++.+++.++|+++|.++++||+||+++++.+++++.+|
T Consensus 384 ~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~---~-----~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~g 455 (477)
T PLN02863 384 MLAWPMAADQFVNASLLVDELKVAVRVCEG---A-----DTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKER 455 (477)
T ss_pred EEeCCccccchhhHHHHHHhhceeEEeccC---C-----CCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999998889999998532 0 12568999999999999547899999999999999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 045029 467 GSSFSSMGRLIDDFLD 482 (485)
Q Consensus 467 g~~~~~~~~~~~~~~~ 482 (485)
|||+.++++||+++.+
T Consensus 456 GSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 456 GSSVKDLDGFVKHVVE 471 (477)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999999864
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-68 Score=533.43 Aligned_cols=431 Identities=26% Similarity=0.451 Sum_probs=320.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHH--HHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARL--LVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~--L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~ 80 (485)
+.||+++|+|++||++|+++||++ |++||+. |||++|+..+ ..++... .....+++..++++ .|++..
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~--VT~v~t~~~~-----~~~~~~~--~~~~~~~~~~~~~g-lp~~~~ 77 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLH--FTLATTEQAR-----DLLSTVE--KPRRPVDLVFFSDG-LPKDDP 77 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcE--EEEEeccchh-----hhhcccc--CCCCceEEEECCCC-CCCCcc
Confidence 569999999999999999999999 5699977 8899988321 1112111 11235777777654 344332
Q ss_pred -ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhc
Q 045029 81 -PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHD 159 (485)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 159 (485)
+...++..+.+ .+.+.++++++. .++||||+|.++.|+..+|+++|||.++|++++++.+..+.+++...
T Consensus 78 ~~~~~~~~~~~~----~~~~~l~~~l~~----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~- 148 (456)
T PLN02210 78 RAPETLLKSLNK----VGAKNLSKIIEE----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT- 148 (456)
T ss_pred cCHHHHHHHHHH----hhhHHHHHHHhc----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc-
Confidence 22233332222 333444444443 37999999999999999999999999999999998887776653211
Q ss_pred cccccccccCCCCCccccCCCCCCCCCCCCCccccCccH--HHHHH-HHHHhhcCCceEEEcChhhhhHHHHHHhhCCCC
Q 045029 160 EENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEW--AEVLN-QQARTFRGTKGIMVNTFEELESHAVRSFSDGKS 236 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 236 (485)
...+ ...+.+....+|+++ .++..+++..+..... +..+. +..+....+.++++|||++||+.++..+++
T Consensus 149 -~~~~--~~~~~~~~~~~Pgl~-~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 221 (456)
T PLN02210 149 -NSFP--DLEDLNQTVELPALP-LLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--- 221 (456)
T ss_pred -CCCC--cccccCCeeeCCCCC-CCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh---
Confidence 1111 011111234578875 5677777765543221 22222 333445677899999999999999988865
Q ss_pred CCCCeEEeccccCCC--CCCCC---CCCC-C-CCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCc
Q 045029 237 KTPPLYPMGPILNIK--GENYD---LGEG-G-ADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHR 309 (485)
Q Consensus 237 ~~p~v~~vGpl~~~~--~~~~~---~~~~-~-~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~ 309 (485)
.+++++|||+++.. ..... .+.. . +..+++|.+|||.++++|+|||||||....+.+++++++.||+.++++
T Consensus 222 -~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~ 300 (456)
T PLN02210 222 -LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVP 300 (456)
T ss_pred -cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCC
Confidence 25799999997521 10000 0000 0 234577999999998889999999999989999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-cCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEe
Q 045029 310 FLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-ANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIA 388 (485)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v 388 (485)
|||+++... ....++.|.+++ ++++++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 301 flw~~~~~~--------------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v 366 (456)
T PLN02210 301 FLWVIRPKE--------------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVV 366 (456)
T ss_pred EEEEEeCCc--------------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEE
Confidence 999998541 011335566666 47888999999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhhhcC
Q 045029 389 TWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARKALSDG 466 (485)
Q Consensus 389 ~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~~~~~g 466 (485)
+||+++||+.||+++++.||+|+.+...+ .++.++.++|+++|+++|.++ .++|+||+++++.+++++.+|
T Consensus 367 ~~P~~~DQ~~na~~~~~~~g~G~~l~~~~-------~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~g 439 (456)
T PLN02210 367 AYPSWTDQPIDARLLVDVFGIGVRMRNDA-------VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPG 439 (456)
T ss_pred ecccccccHHHHHHHHHHhCeEEEEeccc-------cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998789999986431 113689999999999999732 269999999999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 045029 467 GSSFSSMGRLIDDFL 481 (485)
Q Consensus 467 g~~~~~~~~~~~~~~ 481 (485)
|||+.++++||+++.
T Consensus 440 GSS~~~l~~~v~~~~ 454 (456)
T PLN02210 440 GSSARNLDLFISDIT 454 (456)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999999985
No 15
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-68 Score=532.51 Aligned_cols=458 Identities=25% Similarity=0.464 Sum_probs=326.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCC----CCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDD----QPDKE 78 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~----~~~~~ 78 (485)
+.|++++|+|++||++|+++||+.|++||+. |||++|+..+.. ......... .....++|+.++.. ..|++
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~--vT~v~t~~n~~~-~~~~~~~~~--~~~~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVI--VSLVTTPQNASR-FAKTIDRAR--ESGLPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCe--EEEEECCCcHHH-Hhhhhhhcc--ccCCCeEEEEcCCCCccCCCCCC
Confidence 4699999999999999999999999999966 889998843211 111111000 11124899988831 23444
Q ss_pred CCC----h-HhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHH
Q 045029 79 STP----P-KRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLR 153 (485)
Q Consensus 79 ~~~----~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 153 (485)
.++ . ...+..+... ...+.+.++++++. ...+++|||+|.+++|+..+|+++|||.++|++++++.+..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~lL~~--~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDA-VDKLQQPLERFLEQ--AKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccccccCCcHHHHHHHHHH-HHHhHHHHHHHHHh--cCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 321 1 1222222222 22344445554443 12467999999999999999999999999999999988776554
Q ss_pred HhhhhccccccccccCCCCCccccCCCCC--CCCCCCCCccccCccHHHHHHHHHHhh-cCCceEEEcChhhhhHHHHHH
Q 045029 154 VQALHDEENTTITELKDSDAVLEVPGLVN--SVPAKVWPSVVFNKEWAEVLNQQARTF-RGTKGIMVNTFEELESHAVRS 230 (485)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~le~~~~~~ 230 (485)
+........ ....+.+..+|+++. .++..+++..+.....+..+...+... ++++++++|||++||+.++..
T Consensus 160 ~~~~~~~~~-----~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 160 IRLHNAHLS-----VSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHhccccc-----CCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 422221111 111123455788863 255556776443222233444444332 357799999999999999999
Q ss_pred hhCCCCCCCCeEEeccccCCCCCCCCC---CCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcC
Q 045029 231 FSDGKSKTPPLYPMGPILNIKGENYDL---GEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSG 307 (485)
Q Consensus 231 ~~~~~~~~p~v~~vGpl~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~ 307 (485)
+... ..+++++|||++.......+. ........++|.+|||+++++|||||||||......+++.+++.||+.++
T Consensus 235 l~~~--~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~ 312 (491)
T PLN02534 235 YEKA--IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASK 312 (491)
T ss_pred HHhh--cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 8763 335799999997532110000 00001124579999999988999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCc
Q 045029 308 HRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVP 386 (485)
Q Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP 386 (485)
++|||+++...... + .....+|++|.+++.++++++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 313 ~~flW~~r~~~~~~------~--~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 313 KPFIWVIKTGEKHS------E--LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred CCEEEEEecCcccc------c--hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 99999998531000 0 001236899998876656555 99999999999999999999999999999999999
Q ss_pred EeeccccccchhhHHHHHHhhceeEEeeecccccccccCC-c-ccCHHHHHHHHHHHhc--C--ChHHHHHHHHHHHHHH
Q 045029 387 IATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENP-T-VVNAEVIERGIRCLME--H--NSEMRKRVKEMSEKAR 460 (485)
Q Consensus 387 ~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~-~-~~~~~~l~~av~~vl~--~--~~~~r~~a~~~~~~~~ 460 (485)
||++|+++||+.||+++++.||+|+++......+++-+.+ + .+++++|.++|+++|. + ..++|+||++++++++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885321100000000 1 4899999999999995 2 2489999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHhhc
Q 045029 461 KALSDGGSSFSSMGRLIDDFLDN 483 (485)
Q Consensus 461 ~~~~~gg~~~~~~~~~~~~~~~~ 483 (485)
+++.+||||+.++++||++|.+.
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999753
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=8.9e-68 Score=523.31 Aligned_cols=422 Identities=21% Similarity=0.310 Sum_probs=313.7
Q ss_pred CC-CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhcc-CCCCCeEEEECCC---CCC
Q 045029 1 MK-KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAAS-NLSSRIKFINLPD---DQP 75 (485)
Q Consensus 1 m~-~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~l~~---~~~ 75 (485)
|+ |+||+++|+|++||++|+++||+.|++|||+ |||++++ .+..++... ....+++|..++. ...
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~--VT~vtt~--------~~~~~i~~~~a~~~~i~~~~l~~p~~dgL 70 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHR--VTFLLPK--------KAQKQLEHHNLFPDSIVFHPLTIPPVNGL 70 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCE--EEEEecc--------chhhhhhcccCCCCceEEEEeCCCCccCC
Confidence 56 6699999999999999999999999999988 8899977 222222211 1122466665543 223
Q ss_pred CCCCC---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHH
Q 045029 76 DKEST---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFML 152 (485)
Q Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 152 (485)
|++.+ +....+..++......+.+.++++++. .++||||+| ++.|+..+|+++|||+++|++++++.+. +.
T Consensus 71 p~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~ 144 (442)
T PLN02208 71 PAGAETTSDIPISMDNLLSEALDLTRDQVEAAVRA----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HT 144 (442)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HH
Confidence 44432 121122233333344555566666554 378999999 6899999999999999999999987543 33
Q ss_pred HHhhhhccccccccccCCCCCccccCCCCC---CCCCCCCCccccCccHHHHHHHHH-HhhcCCceEEEcChhhhhHHHH
Q 045029 153 RVQALHDEENTTITELKDSDAVLEVPGLVN---SVPAKVWPSVVFNKEWAEVLNQQA-RTFRGTKGIMVNTFEELESHAV 228 (485)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~le~~~~ 228 (485)
+++. .. . ...+|+++. .++..+++........+..+.+.. +...+++++++|||++||+.+.
T Consensus 145 ~~~~--~~-------~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~ 210 (442)
T PLN02208 145 HVPG--GK-------L-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFC 210 (442)
T ss_pred ccCc--cc-------c-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHH
Confidence 3221 00 0 012466653 134555664311111233333332 4566889999999999999999
Q ss_pred HHhhCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCC
Q 045029 229 RSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGH 308 (485)
Q Consensus 229 ~~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~ 308 (485)
..+... ..|++++|||++.... ....++++|.+|||++++++||||||||+..++.+++.+++.+++..+.
T Consensus 211 ~~~~~~--~~~~v~~vGpl~~~~~-------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~ 281 (442)
T PLN02208 211 DYISRQ--YHKKVLLTGPMFPEPD-------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGL 281 (442)
T ss_pred HHHHhh--cCCCEEEEeecccCcC-------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCC
Confidence 888763 4578999999975321 0123578999999999888999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcE
Q 045029 309 RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPI 387 (485)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~ 387 (485)
+|+|+++..... .+....+|++|+++++++++++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 282 pf~wv~r~~~~~---------~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~ 352 (442)
T PLN02208 282 PFLIAVKPPRGS---------STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQM 352 (442)
T ss_pred cEEEEEeCCCcc---------cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCE
Confidence 999999854110 0112358999999998777777 999999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhh
Q 045029 388 ATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN----SEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 388 v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~----~~~r~~a~~~~~~~~~~~ 463 (485)
|+||+++||+.||+++++.+|+|+.++.+ +++.+++++|+++|+++|+++ .++|+||+++++.+.
T Consensus 353 l~~P~~~DQ~~na~~~~~~~g~gv~~~~~--------~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~--- 421 (442)
T PLN02208 353 VLIPFLSDQVLFTRLMTEEFEVSVEVSRE--------KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV--- 421 (442)
T ss_pred EecCcchhhHHHHHHHHHHhceeEEeccc--------cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh---
Confidence 99999999999999988878999999743 112589999999999999732 259999999998873
Q ss_pred hcCCChHHHHHHHHHHHhh
Q 045029 464 SDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~~ 482 (485)
.||||++++++||+++.+
T Consensus 422 -~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 422 -SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred -cCCcHHHHHHHHHHHHHH
Confidence 378999999999999854
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-67 Score=527.87 Aligned_cols=435 Identities=27% Similarity=0.506 Sum_probs=326.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDR--DDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~r--GH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~ 80 (485)
+.||+++|+|++||++|+++||++|++| ||+ ||+++++ .+...+.......+++|+.+++.. |++..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~--VT~~~t~--------~~~~~i~~~~~~~gi~fv~lp~~~-p~~~~ 78 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDIL--ITFVVTE--------EWLGLIGSDPKPDNIRFATIPNVI-PSELV 78 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcE--EEEEeCC--------chHhHhhccCCCCCEEEEECCCCC-CCccc
Confidence 5799999999999999999999999999 877 8899988 333333211112479999998742 32221
Q ss_pred ---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhh
Q 045029 81 ---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQAL 157 (485)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 157 (485)
+....+..+.+.+.+.+++.++++. .++||||+|.++.|+..+|+++|||++.|+++++..++.+.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~ 152 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRLE------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLL 152 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhcC------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhh
Confidence 2223333333334445555554441 3689999999999999999999999999999999888877776543
Q ss_pred hccccccccccC--CCCCccccCCCCCCCCCCCCCccccCcc--HHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhC
Q 045029 158 HDEENTTITELK--DSDAVLEVPGLVNSVPAKVWPSVVFNKE--WAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSD 233 (485)
Q Consensus 158 ~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~ 233 (485)
......+.. .. .......+|+++ .++..+++..+.+.. .+..+........++.++++|||++||+.+...+..
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~iPg~~-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 230 (459)
T PLN02448 153 PQNGHFPVE-LSESGEERVDYIPGLS-STRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKS 230 (459)
T ss_pred hhccCCCCc-cccccCCccccCCCCC-CCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHh
Confidence 322111100 00 001112477774 466667776543321 245566666666778899999999999999988876
Q ss_pred CCCCCCCeEEeccccCCCCCCCCCCC-CCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEE
Q 045029 234 GKSKTPPLYPMGPILNIKGENYDLGE-GGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLW 312 (485)
Q Consensus 234 ~~~~~p~v~~vGpl~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~ 312 (485)
. ..+++++|||+.+.......... .....+.+|.+||+.++++++|||||||+...+.+++++++.||+.++++|||
T Consensus 231 ~--~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw 308 (459)
T PLN02448 231 K--FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLW 308 (459)
T ss_pred h--cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 3 33479999999753211000000 00112358999999998889999999999888999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccc
Q 045029 313 SLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM 392 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 392 (485)
+++... .++.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 309 ~~~~~~-------------------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~ 369 (459)
T PLN02448 309 VARGEA-------------------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPL 369 (459)
T ss_pred EEcCch-------------------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccc
Confidence 876431 2454555678899999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhhhcCCC
Q 045029 393 YAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN----SEMRKRVKEMSEKARKALSDGGS 468 (485)
Q Consensus 393 ~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~----~~~r~~a~~~~~~~~~~~~~gg~ 468 (485)
++||+.||+|+++.||+|+.+..... + .+.+++++|+++|+++|++. .+||+||+++++++++++.+|||
T Consensus 370 ~~DQ~~na~~v~~~~g~G~~~~~~~~-~-----~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGs 443 (459)
T PLN02448 370 FWDQPLNSKLIVEDWKIGWRVKREVG-E-----ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGS 443 (459)
T ss_pred cccchhhHHHHHHHhCceEEEecccc-c-----CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999988899999863211 0 12579999999999999731 37999999999999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 045029 469 SFSSMGRLIDDFLDN 483 (485)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (485)
|++++++||+++..-
T Consensus 444 s~~~l~~~v~~~~~~ 458 (459)
T PLN02448 444 SDTNLDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998753
No 18
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-67 Score=521.46 Aligned_cols=423 Identities=24% Similarity=0.339 Sum_probs=310.2
Q ss_pred CC-CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECC--C-CCCC
Q 045029 1 MK-KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLP--D-DQPD 76 (485)
Q Consensus 1 m~-~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~--~-~~~~ 76 (485)
|. ++||+++|+|++||++|+++||+.|+++|++ |||++++..+ ..+.... ....+++|..++ . ...|
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~--VT~vtt~~~~-----~~i~~~~--~~~~~i~~~~i~lP~~dGLP 71 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHR--VTFFLPKKAH-----KQLQPLN--LFPDSIVFEPLTLPPVDGLP 71 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCE--EEEEeCCchh-----hhhcccc--cCCCceEEEEecCCCcCCCC
Confidence 44 6799999999999999999999999999977 8899987321 1221111 112357885554 2 1234
Q ss_pred CCCCC---hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHH
Q 045029 77 KESTP---PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLR 153 (485)
Q Consensus 77 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 153 (485)
++.+. .......++......+...++++++. .++||||+|. ++|+..+|+++|||++.|++++++.++.+.+
T Consensus 72 ~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 72 FGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRA----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 44321 11111222222333555556655544 3679999995 8999999999999999999999988777665
Q ss_pred HhhhhccccccccccCCCCCccccCCCCC---CCCCCC--CCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHH
Q 045029 154 VQALHDEENTTITELKDSDAVLEVPGLVN---SVPAKV--WPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAV 228 (485)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~---~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 228 (485)
... . .. ..+|+++. .++..+ ++..+.. ....+.+..+...+++++++|||++||+.+.
T Consensus 147 ~~~---~-------~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 209 (446)
T PLN00414 147 PRA---E-------LG-----FPPPDYPLSKVALRGHDANVCSLFAN--SHELFGLITKGLKNCDVVSIRTCVELEGNLC 209 (446)
T ss_pred cHh---h-------cC-----CCCCCCCCCcCcCchhhcccchhhcc--cHHHHHHHHHhhccCCEEEEechHHHHHHHH
Confidence 211 0 00 11245432 122222 2222211 1234445556667889999999999999999
Q ss_pred HHhhCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCC
Q 045029 229 RSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGH 308 (485)
Q Consensus 229 ~~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~ 308 (485)
..+.+. ..+++++|||+++..... ......++|.+|||+++++|||||||||....+.+++.+++.+|+.++.
T Consensus 210 ~~~~~~--~~~~v~~VGPl~~~~~~~-----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~ 282 (446)
T PLN00414 210 DFIERQ--CQRKVLLTGPMLPEPQNK-----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGL 282 (446)
T ss_pred HHHHHh--cCCCeEEEcccCCCcccc-----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 988762 235699999997532110 0112346799999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcE
Q 045029 309 RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPI 387 (485)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~ 387 (485)
+|+|+++..... .+....+|++|+++++++++++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 283 ~Flwvvr~~~~~---------~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~ 353 (446)
T PLN00414 283 PFLIAVMPPKGS---------STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQI 353 (446)
T ss_pred CeEEEEecCCCc---------ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCE
Confidence 999999864210 0112458999999999999988 999999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhh
Q 045029 388 ATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN----SEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 388 v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~----~~~r~~a~~~~~~~~~~~ 463 (485)
|+||+++||+.||+++++.+|+|+.+..+ + ++.++.++|+++|+++|+++ .++|+||+++++.+.
T Consensus 354 l~~P~~~dQ~~na~~~~~~~g~g~~~~~~---~-----~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~--- 422 (446)
T PLN00414 354 VFIPQLADQVLITRLLTEELEVSVKVQRE---D-----SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV--- 422 (446)
T ss_pred EecCcccchHHHHHHHHHHhCeEEEeccc---c-----CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---
Confidence 99999999999999998778999999642 0 12589999999999999732 249999999999964
Q ss_pred hcCCChHHHHHHHHHHHhh
Q 045029 464 SDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~~ 482 (485)
++||+| .++++||+++.+
T Consensus 423 ~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 423 SPGLLS-GYADKFVEALEN 440 (446)
T ss_pred cCCCcH-HHHHHHHHHHHH
Confidence 457744 338999999854
No 19
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.3e-67 Score=528.94 Aligned_cols=446 Identities=28% Similarity=0.486 Sum_probs=320.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhc------cCCCCCeEEEECCCC--C
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAA------SNLSSRIKFINLPDD--Q 74 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~f~~l~~~--~ 74 (485)
+.||+++|+|++||++|+++||+.|++|||+ |||++++... ..++.... ....-.+.+..++.. .
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~--VT~vtt~~~~-----~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~g 77 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAK--STILTTPLNA-----KIFEKPIEAFKNLNPGLEIDIQIFNFPCVELG 77 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCE--EEEEECCCch-----hhhhhhhhhhcccCCCCcceEEEeeCCCCcCC
Confidence 6799999999999999999999999999988 8899988322 11111110 000113445555531 2
Q ss_pred CCCCCCC-----------hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEech
Q 045029 75 PDKESTP-----------PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTS 143 (485)
Q Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 143 (485)
.|++.++ ...++..+. .....+.+.+++++++ .++||||+|.++.|+..+|+++|||.++|+++
T Consensus 78 lP~g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~----~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 78 LPEGCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET----TRPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred CCCCcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc----CCCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 3443221 112222233 3334566666776654 47899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhccccccccccCCCCCccccCCCCC--CCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChh
Q 045029 144 GAAFLGFMLRVQALHDEENTTITELKDSDAVLEVPGLVN--SVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFE 221 (485)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 221 (485)
+++....+.+......... .........+|+++. .++..+++..-........+........+.+++++||++
T Consensus 153 ~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~ 227 (482)
T PLN03007 153 GYFSLCASYCIRVHKPQKK-----VASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFY 227 (482)
T ss_pred cHHHHHHHHHHHhcccccc-----cCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHH
Confidence 9887766654432211100 111111233677753 122333442111111223334444556778899999999
Q ss_pred hhhHHHHHHhhCCCCCCCCeEEeccccCCCCCCCC---CCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHH
Q 045029 222 ELESHAVRSFSDGKSKTPPLYPMGPILNIKGENYD---LGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKE 298 (485)
Q Consensus 222 ~le~~~~~~~~~~~~~~p~v~~vGpl~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~ 298 (485)
+||..+...+.+. ...++++|||+........+ .....+..+++|.+|||.++++++|||||||+...+.+++.+
T Consensus 228 ~le~~~~~~~~~~--~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 305 (482)
T PLN03007 228 ELESAYADFYKSF--VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFE 305 (482)
T ss_pred HHHHHHHHHHHhc--cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHH
Confidence 9999988888763 22469999998653221000 000011235789999999988999999999999889999999
Q ss_pred HHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcce-EeecchhhhhccCCccccccccCchhh
Q 045029 299 IACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKV-IGWAPQIAVLAHPAIGGFVSHCGWNST 377 (485)
Q Consensus 299 ~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~~~pq~~vL~h~~~~~~itHgG~~s~ 377 (485)
++.||+.++++|||+++.....+ +....+|++|.+++.+++.+ .+|+||.+||+|+++++|||||||||+
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~~---------~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~ 376 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQG---------EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSL 376 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCccc---------chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHH
Confidence 99999999999999998642100 01134899999988666555 499999999999999999999999999
Q ss_pred HHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccc--ccccccCCcccCHHHHHHHHHHHhcCCh---HHHHHH
Q 045029 378 LESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYR--NDIMIENPTVVNAEVIERGIRCLMEHNS---EMRKRV 452 (485)
Q Consensus 378 ~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~--~~~~~~~~~~~~~~~l~~av~~vl~~~~---~~r~~a 452 (485)
+||+++|||||+||+++||+.||+++++.+++|+.+..... .+. +.+++++|+++|+++|. ++ +||+||
T Consensus 377 ~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~-----~~~~~~~l~~av~~~m~-~~~~~~~r~~a 450 (482)
T PLN03007 377 LEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKG-----DFISREKVEKAVREVIV-GEEAEERRLRA 450 (482)
T ss_pred HHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccccc-----CcccHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 99999999999999999999999999877788877642100 001 16899999999999998 45 899999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 453 KEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 453 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
+++++.+++++.+||||++++++||+++.+
T Consensus 451 ~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 451 KKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-67 Score=515.05 Aligned_cols=422 Identities=21% Similarity=0.313 Sum_probs=311.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCC-CCCCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDD-QPDKESTP 81 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~-~~~~~~~~ 81 (485)
|.||+++|+|++||++|+++||+.|+.+|+. |||++|+.+. .+............+.+.+++.. ..|++.++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~--vT~~tt~~~~-----~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~ 77 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHT--VTFLLPKKAL-----KQLEHLNLFPHNIVFRSVTVPHVDGLPVGTET 77 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCE--EEEEeCcchh-----hhhcccccCCCCceEEEEECCCcCCCCCcccc
Confidence 6899999999999999999999999999955 8999988432 22222110000123677777731 23444321
Q ss_pred ----hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhh
Q 045029 82 ----PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQAL 157 (485)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 157 (485)
.......+.. ....+.+.++++++. .+++|||+|. +.|+..+|+++|||.+.|++++++.++++.+ +
T Consensus 78 ~~~~~~~~~~~~~~-a~~~~~~~~~~~l~~----~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~-- 148 (453)
T PLN02764 78 VSEIPVTSADLLMS-AMDLTRDQVEVVVRA----VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P-- 148 (453)
T ss_pred cccCChhHHHHHHH-HHHHhHHHHHHHHHh----CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c--
Confidence 1111122222 222444555555544 2679999995 8999999999999999999999987777642 1
Q ss_pred hccccccccccCCCCCccccCCCCC---CCCCCCCCcccc--Cc----cHHHHHHHHHHhhcCCceEEEcChhhhhHHHH
Q 045029 158 HDEENTTITELKDSDAVLEVPGLVN---SVPAKVWPSVVF--NK----EWAEVLNQQARTFRGTKGIMVNTFEELESHAV 228 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~P~~~~---~~~~~~l~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 228 (485)
... +. ..+|+++. .++..+++.... .. .....+.+......+++++++|||++||+.++
T Consensus 149 --~~~-----~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~ 216 (453)
T PLN02764 149 --GGE-----LG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFC 216 (453)
T ss_pred --ccc-----CC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHH
Confidence 000 10 12366642 244445544211 10 11223333335567788999999999999999
Q ss_pred HHhhCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCC
Q 045029 229 RSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGH 308 (485)
Q Consensus 229 ~~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~ 308 (485)
..++.. ..+++++|||+++... . ....+++|.+|||+++++|||||||||+..++.+++.+++.+|+.++.
T Consensus 217 ~~~~~~--~~~~v~~VGPL~~~~~-~------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~ 287 (453)
T PLN02764 217 DYIEKH--CRKKVLLTGPVFPEPD-K------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGS 287 (453)
T ss_pred HHHHhh--cCCcEEEeccCccCcc-c------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 988762 2357999999975321 0 012357899999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcE
Q 045029 309 RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPI 387 (485)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~ 387 (485)
+|+|+++.... .++....+|++|+++++++++++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 288 pflwv~r~~~~---------~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~ 358 (453)
T PLN02764 288 PFLVAVKPPRG---------SSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQI 358 (453)
T ss_pred CeEEEEeCCCC---------CcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCE
Confidence 99999985310 01112458999999999999888 999999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHhh
Q 045029 388 ATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN----SEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 388 v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~----~~~r~~a~~~~~~~~~~~ 463 (485)
|+||+++||+.||+++++.+|+|+.+..+ +.+.++.++|+++|+++|+++ .++|+||+++++.++
T Consensus 359 l~~P~~~DQ~~na~~l~~~~g~gv~~~~~--------~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~--- 427 (453)
T PLN02764 359 VLVPQLGDQVLNTRLLSDELKVSVEVARE--------ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA--- 427 (453)
T ss_pred EeCCcccchHHHHHHHHHHhceEEEeccc--------cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---
Confidence 99999999999999998778999987532 001589999999999999732 248888888888874
Q ss_pred hcCCChHHHHHHHHHHHhh
Q 045029 464 SDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~~ 482 (485)
+||||+.++++||+++.+
T Consensus 428 -~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 428 -SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred -hcCCHHHHHHHHHHHHHH
Confidence 479999999999999875
No 21
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.4e-67 Score=518.82 Aligned_cols=442 Identities=22% Similarity=0.366 Sum_probs=320.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCC---CCCCCC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDD---QPDKES 79 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~---~~~~~~ 79 (485)
+.||+++|+|++||++|+++||+.|+.||.. |||++|+..+ ....... .....+++++.++.. ..|++.
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~--vT~v~t~~n~-----~~~~~~~-~~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHK--ISFISTPRNL-----HRLPKIP-SQLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCE--EEEEeCCchH-----Hhhhhcc-ccCCCCeeEEECCCCccCCCCCCc
Confidence 5699999999999999999999999999955 8999988432 1111110 011236899988832 234332
Q ss_pred C---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhh
Q 045029 80 T---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQA 156 (485)
Q Consensus 80 ~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 156 (485)
+ +.......++......+.+.++++++. .+++|||+|.++.|+..+|+++|||+++|++++++.++.++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLET----SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHh----CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 2 111011112223333455555665554 368999999999999999999999999999999988887665432
Q ss_pred hhccccccccccCCCCCcc-ccCCCCC-----CCCCCCCCccccCc----cHHHHHHHHHHhhcCCceEEEcChhhhhHH
Q 045029 157 LHDEENTTITELKDSDAVL-EVPGLVN-----SVPAKVWPSVVFNK----EWAEVLNQQARTFRGTKGIMVNTFEELESH 226 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~-~~P~~~~-----~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~le~~ 226 (485)
....+.. ..++... .+|++.+ .++..+++..+... ..+..+.+......++.|+++|||++||+.
T Consensus 154 ~~~~~~~-----~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 154 LMEGGDL-----RSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred hhhcccC-----CCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 2211111 1111111 2344321 13344666554321 123444455555678899999999999999
Q ss_pred HHHHhhCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhc
Q 045029 227 AVRSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQS 306 (485)
Q Consensus 227 ~~~~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~ 306 (485)
++..+++. ..+++++|||+++................++|.+|||++++++||||||||+..++.+++.+++.+|+++
T Consensus 229 ~l~~l~~~--~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s 306 (472)
T PLN02670 229 WFDLLSDL--YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKS 306 (472)
T ss_pred HHHHHHHh--hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 99998762 2357999999975311000000000011367999999998889999999999999999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCC
Q 045029 307 GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGV 385 (485)
Q Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~Gv 385 (485)
+++|||+++..... + .+....+|++|+++++++++++ +|+||.+||+|+++++|||||||||++||+++||
T Consensus 307 ~~~FlWv~r~~~~~-----~---~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GV 378 (472)
T PLN02670 307 ETPFFWVLRNEPGT-----T---QNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGR 378 (472)
T ss_pred CCCEEEEEcCCccc-----c---cchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCC
Confidence 99999999863100 0 0112358999999999999886 9999999999999999999999999999999999
Q ss_pred cEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHhh
Q 045029 386 PIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN--SEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 386 P~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~--~~~r~~a~~~~~~~~~~~ 463 (485)
|||+||+++||+.||+++++ +|+|++++... .++.++.++|+++|+++|.++ .+||+||+++++.+++.
T Consensus 379 P~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~-------~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~- 449 (472)
T PLN02670 379 VLILFPVLNEQGLNTRLLHG-KKLGLEVPRDE-------RDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM- 449 (472)
T ss_pred CEEeCcchhccHHHHHHHHH-cCeeEEeeccc-------cCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc-
Confidence 99999999999999999876 69999997431 112689999999999999733 27999999999999875
Q ss_pred hcCCChHHHHHHHHHHHhhc
Q 045029 464 SDGGSSFSSMGRLIDDFLDN 483 (485)
Q Consensus 464 ~~gg~~~~~~~~~~~~~~~~ 483 (485)
+.....+++|++++.++
T Consensus 450 ---~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 450 ---DRNNRYVDELVHYLREN 466 (472)
T ss_pred ---chhHHHHHHHHHHHHHh
Confidence 55678999999998875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.2e-49 Score=399.96 Aligned_cols=405 Identities=20% Similarity=0.222 Sum_probs=271.4
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCC--C---C
Q 045029 4 AQLVFI-PSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQP--D---K 77 (485)
Q Consensus 4 ~~i~~~-~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~--~---~ 77 (485)
+||+.+ |.++.||+.-+.+|+++|++|||+ ||++++.... ..+. ....+++.+.++.... . .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~--VTvi~p~~~~------~~~~----~~~~~~~~i~~~~~~~~~~~~~~ 88 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHN--VTVIKPTLRV------YYAS----HLCGNITEIDASLSVEYFKKLVK 88 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCe--EEEEeccccc------cccc----CCCCCEEEEEcCCChHHHHHHHh
Confidence 467655 889999999999999999999999 7788654110 0000 0123455444431100 0 0
Q ss_pred CC---------CChHh----HHHHHHHhhhhhHH-HHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHc-CCCeEEEec
Q 045029 78 ES---------TPPKR----FFGHFVESKKPHVK-EVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEF-KVPSYLFFT 142 (485)
Q Consensus 78 ~~---------~~~~~----~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~~ 142 (485)
.. .+... ....+...|...+. ..+.++++. ...++|+||+|.+..|++.+|+++ ++|.|.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss 166 (507)
T PHA03392 89 SSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISS 166 (507)
T ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CCCceeEEEecccchhHHHHHHHhCCCCEEEEcC
Confidence 00 00000 01111222222221 233444441 125899999999989999999999 999877666
Q ss_pred hhHHHHHHHHHHhhhhccccccccccC-CCCCccccCCCCCCCCCC-CCCccccCccH-------HHH-HHHHHHhhcCC
Q 045029 143 SGAAFLGFMLRVQALHDEENTTITELK-DSDAVLEVPGLVNSVPAK-VWPSVVFNKEW-------AEV-LNQQARTFRGT 212 (485)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~~~-~l~~~~~~~~~-------~~~-~~~~~~~~~~~ 212 (485)
........ . ..+ +|.+++++|.+...+..+ .+.+++.+... +.. +..+.+..++.
T Consensus 167 ~~~~~~~~--~-------------~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (507)
T PHA03392 167 GYGLAENF--E-------------TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQ 231 (507)
T ss_pred CCCchhHH--H-------------hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44321110 0 034 677888888876444322 23444443211 111 11111112222
Q ss_pred ceEEEcChhhhhHHHHHHhhCC-------CCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEee
Q 045029 213 KGIMVNTFEELESHAVRSFSDG-------KSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCF 285 (485)
Q Consensus 213 ~~~~~~s~~~le~~~~~~~~~~-------~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~ 285 (485)
++.-.+++.++.......+.|+ +|..|++++|||+...... ..++++++.+|+++++ +++|||||
T Consensus 232 f~~~~~~~~~l~~~~~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~-------~~~l~~~l~~fl~~~~-~g~V~vS~ 303 (507)
T PHA03392 232 FGPDTPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKP-------PQPLDDYLEEFLNNST-NGVVYVSF 303 (507)
T ss_pred cCCCCCCHHHHHhCCcEEEEecCccccCCCCCCCCeeeecccccCCCC-------CCCCCHHHHHHHhcCC-CcEEEEEC
Confidence 2321234555555544444433 4567779999998653211 1467899999999874 47999999
Q ss_pred cCcc---cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhcc
Q 045029 286 GSWG---SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAH 362 (485)
Q Consensus 286 GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h 362 (485)
||+. ..+.+.++.+++||++.+++|||++++... ...+ ++|+++++|+||.+||+|
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------------~~~~--------p~Nv~i~~w~Pq~~lL~h 362 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------------AINL--------PANVLTQKWFPQRAVLKH 362 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------------cccC--------CCceEEecCCCHHHHhcC
Confidence 9985 357788999999999999999999975420 0013 367999999999999999
Q ss_pred CCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHh
Q 045029 363 PAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 363 ~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl 442 (485)
+++++||||||+||++||+++|||+|++|+++||+.||+|+++. |+|+.++.. .+|+++|.++|++++
T Consensus 363 p~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~-----------~~t~~~l~~ai~~vl 430 (507)
T PHA03392 363 KNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTV-----------TVSAAQLVLAIVDVI 430 (507)
T ss_pred CCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccC-----------CcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999886 999999865 789999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 443 EHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 443 ~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
+ |++||+||+++++.+++. .-+....+-.+++.+.+
T Consensus 431 ~-~~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 431 E-NPKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIR 466 (507)
T ss_pred C-CHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHh
Confidence 9 799999999999999985 32333444466666554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=4.5e-51 Score=419.73 Aligned_cols=382 Identities=24% Similarity=0.348 Sum_probs=226.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC----
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST---- 80 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~---- 80 (485)
||+++|. +.||+.++..|+++|++|||+ ||++++. ... ... .....++++..++.........
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~--VTvl~~~--------~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHN--VTVLTPS--------PSS-SLN-PSKPSNIRFETYPDPYPEEEFEEIFP 68 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TT--SEEEHHH--------HHH-T-------S-CCEEEE-----TT------T
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCc--eEEEEee--------ccc-ccc-cccccceeeEEEcCCcchHHHhhhhH
Confidence 6788885 789999999999999999999 6688653 111 110 0123455565555433211111
Q ss_pred ChH----------hHHHHHHHhh---hhhHHHHH----------HhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCe
Q 045029 81 PPK----------RFFGHFVESK---KPHVKEVV----------ANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPS 137 (485)
Q Consensus 81 ~~~----------~~~~~~~~~~---~~~~~~~l----------~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~ 137 (485)
... ..+..++... .......+ +.+.. .++|++|+|.+.+|+..+|+.+++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~~fDlvI~d~f~~c~~~la~~l~iP~ 143 (500)
T PF00201_consen 69 EFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----EKFDLVISDAFDPCGLALAHYLGIPV 143 (500)
T ss_dssp THHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----HHHCT-EEEEEESSHHHHHHHHHHTH
T ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hccccceEeeccchhHHHHHHhcCCe
Confidence 000 0111111111 01111111 11222 37999999999899999999999998
Q ss_pred EEEechhHHHHHHHHHHhhhhccccccccccCCCCCccccCCCCCCCCCC-CCCccccCccHHHHHHHHHHhhcC---Cc
Q 045029 138 YLFFTSGAAFLGFMLRVQALHDEENTTITELKDSDAVLEVPGLVNSVPAK-VWPSVVFNKEWAEVLNQQARTFRG---TK 213 (485)
Q Consensus 138 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~---~~ 213 (485)
+.+.++... ... .....+.|..+.++|.....++.. .+.+++.+................ ..
T Consensus 144 i~~~s~~~~-----------~~~---~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~ 209 (500)
T PF00201_consen 144 IIISSSTPM-----------YDL---SSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKL 209 (500)
T ss_dssp HHHHHCCSC-----------SCC---TCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS
T ss_pred EEEeccccc-----------chh---hhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHH
Confidence 764332221 000 000124566777777765433322 234444443221111111111111 11
Q ss_pred eEEEc----ChhhhhHHHHHHhhCC-------CCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEE
Q 045029 214 GIMVN----TFEELESHAVRSFSDG-------KSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVF 282 (485)
Q Consensus 214 ~~~~~----s~~~le~~~~~~~~~~-------~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vy 282 (485)
..-.. +..++.......+.++ +|..|++.+||++..... .++++++..|+++..++++||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~---------~~l~~~~~~~~~~~~~~~vv~ 280 (500)
T PF00201_consen 210 YKKYFGFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPA---------KPLPEELWNFLDSSGKKGVVY 280 (500)
T ss_dssp -EEESS-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEE
T ss_pred HhhhcccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccc---------cccccccchhhhccCCCCEEE
Confidence 11111 2233334444444443 345567899999865433 567899999999844578999
Q ss_pred EeecCccc-CCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhc
Q 045029 283 LCFGSWGS-FGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLA 361 (485)
Q Consensus 283 vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~ 361 (485)
|||||+.. ++.+..+++++||++++++|||++++.. +. ..+.|+++++|+||.+||+
T Consensus 281 vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~------------------~~----~l~~n~~~~~W~PQ~~lL~ 338 (500)
T PF00201_consen 281 VSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP------------------PE----NLPKNVLIVKWLPQNDLLA 338 (500)
T ss_dssp EE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH------------------GC----HHHTTEEEESS--HHHHHT
T ss_pred EecCcccchhHHHHHHHHHHHHhhCCCcccccccccc------------------cc----cccceEEEeccccchhhhh
Confidence 99999874 4444588899999999999999997641 11 1236789999999999999
Q ss_pred cCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHH
Q 045029 362 HPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCL 441 (485)
Q Consensus 362 h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~v 441 (485)
||++++||||||+||++||+++|||||++|+++||+.||+|+++. |+|+.++.. .+|.++|.++|+++
T Consensus 339 hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~-----------~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 339 HPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKN-----------DLTEEELRAAIREV 406 (500)
T ss_dssp STTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGG-----------C-SHHHHHHHHHHH
T ss_pred cccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEec-----------CCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887 999999876 79999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHh
Q 045029 442 MEHNSEMRKRVKEMSEKARKA 462 (485)
Q Consensus 442 l~~~~~~r~~a~~~~~~~~~~ 462 (485)
|+ |++|++||+++++.+++.
T Consensus 407 l~-~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 407 LE-NPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HH-SHHHHHHHHHHHHTTT--
T ss_pred Hh-hhHHHHHHHHHHHHHhcC
Confidence 99 899999999999999875
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.3e-43 Score=362.71 Aligned_cols=399 Identities=30% Similarity=0.420 Sum_probs=247.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCC-
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTP- 81 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~- 81 (485)
+.+++++++|++||++|+..||+.|+++||+ ||++++.......................+.+....+ ..+.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~--vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHN--VTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPD-GLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCc--eEEEEeechhcccCCcccceeeeeeecChHHhhhhhh-hhccchHHH
Confidence 4688999999999999999999999999999 7788766322110000000000000000011111110 01111110
Q ss_pred ---hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcC-CCeEEEechhHHHHHHHHHHhhh
Q 045029 82 ---PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFK-VPSYLFFTSGAAFLGFMLRVQAL 157 (485)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~ 157 (485)
.......+...+...+.+.+..+... ...++||+|+|.+..|...+|.... ++...+++..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------- 151 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLL--KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLA-------- 151 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHh--hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHh--------
Confidence 01112233344444444444333322 1234999999998778877777764 888887777664322
Q ss_pred hccccccccccCCCCCccccCCCCCCCCC--CCCCccccCccH--H-HHHH---------HHHHhh--------cCCceE
Q 045029 158 HDEENTTITELKDSDAVLEVPGLVNSVPA--KVWPSVVFNKEW--A-EVLN---------QQARTF--------RGTKGI 215 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~--~~l~~~~~~~~~--~-~~~~---------~~~~~~--------~~~~~~ 215 (485)
++.+....++|........ ..++.+..+... . .... ...... ....++
T Consensus 152 ----------~g~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (496)
T KOG1192|consen 152 ----------LGLPSPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGI 221 (496)
T ss_pred ----------cCCcCcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHh
Confidence 2223333344443221111 112222221110 0 0000 000001 111134
Q ss_pred EEcC-hhhhhHHHHHHhhCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCC--cEEEEeecCcc---
Q 045029 216 MVNT-FEELESHAVRSFSDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPES--SVVFLCFGSWG--- 289 (485)
Q Consensus 216 ~~~s-~~~le~~~~~~~~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~vyvs~GS~~--- 289 (485)
+.++ +..++......+.. ++..+++++|||+...... ...+.+.+|++..+.+ ++|||||||+.
T Consensus 222 ~~~~~~~~ln~~~~~~~~~-~~~~~~v~~IG~l~~~~~~---------~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~ 291 (496)
T KOG1192|consen 222 IVNASFIFLNSNPLLDFEP-RPLLPKVIPIGPLHVKDSK---------QKSPLPLEWLDILDESRHSVVYISFGSMVNSA 291 (496)
T ss_pred hhcCeEEEEccCcccCCCC-CCCCCCceEECcEEecCcc---------ccccccHHHHHHHhhccCCeEEEECCcccccc
Confidence 4444 55555554433322 2246779999999865321 1111456666665444 89999999998
Q ss_pred cCCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhh-hccCCccc
Q 045029 290 SFGEDQVKEIACALEQS-GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAV-LAHPAIGG 367 (485)
Q Consensus 290 ~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~v-L~h~~~~~ 367 (485)
.++.++..+++.||+++ +++|||+++... ...+++++.++.++|+...+|+||.++ |.|+++++
T Consensus 292 ~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~--------------~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~ 357 (496)
T KOG1192|consen 292 DLPEEQKKELAKALESLQGVTFLWKYRPDD--------------SIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGG 357 (496)
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEEecCCc--------------chhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcE
Confidence 89999999999999999 889999998752 011334433222356777799999998 59999999
Q ss_pred cccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 368 FVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 368 ~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
||||||||||+|++++|||+|++|+++||+.||+++++++++++.... .++...+.+++.++++ +++
T Consensus 358 FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~------------~~~~~~~~~~~~~il~-~~~ 424 (496)
T KOG1192|consen 358 FVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKR------------DLVSEELLEAIKEILE-NEE 424 (496)
T ss_pred EEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehh------------hcCcHHHHHHHHHHHc-ChH
Confidence 999999999999999999999999999999999999998555555443 3555559999999999 799
Q ss_pred HHHHHHHHHHHHHH
Q 045029 448 MRKRVKEMSEKARK 461 (485)
Q Consensus 448 ~r~~a~~~~~~~~~ 461 (485)
|+++|+++++.+++
T Consensus 425 y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 425 YKEAAKRLSEILRD 438 (496)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998773
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.3e-42 Score=342.23 Aligned_cols=373 Identities=19% Similarity=0.265 Sum_probs=242.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCC-CC-----CCh
Q 045029 9 IPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDK-ES-----TPP 82 (485)
Q Consensus 9 ~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~-~~-----~~~ 82 (485)
+.+|+.||++|++.||++|++|||+ |++++++ .+.+.+. ..|+.|..++...... .. .+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~--V~~~~~~--------~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~~~~~~ 66 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHR--VTYATTE--------EFAERVE----AAGAEFVLYGSALPPPDNPPENTEEEP 66 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCe--EEEEeCH--------HHHHHHH----HcCCEEEecCCcCccccccccccCcch
Confidence 4689999999999999999999999 7799987 6777766 5688888887543221 11 112
Q ss_pred HhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhcccc
Q 045029 83 KRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEEN 162 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 162 (485)
......+...+...+..++ .+.+. .+||+||+|.+++++..+|+++|||+|.+++...... .+
T Consensus 67 ~~~~~~~~~~~~~~~~~l~-~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~-------- 129 (392)
T TIGR01426 67 IDIIEKLLDEAEDVLPQLE-EAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EF-------- 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cc--------
Confidence 2223333333333333322 33232 5899999999988999999999999998754332100 00
Q ss_pred ccccccCCCCCccccCCCCCC-CCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhH--------HHHHHhhC
Q 045029 163 TTITELKDSDAVLEVPGLVNS-VPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELES--------HAVRSFSD 233 (485)
Q Consensus 163 ~~~~~~~~~~~~~~~P~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~--------~~~~~~~~ 233 (485)
+...|.+... +........ ....+.+..+.+++..|+-..+...+.. .....+..
T Consensus 130 -----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~ 193 (392)
T TIGR01426 130 -----------EEMVSPAGEGSAEEGAIAER-----GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP 193 (392)
T ss_pred -----------cccccccchhhhhhhccccc-----hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC
Confidence 0000000000 000000000 0111222222222222221111111100 00011111
Q ss_pred CCCC-CCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEE
Q 045029 234 GKSK-TPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLW 312 (485)
Q Consensus 234 ~~~~-~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~ 312 (485)
..+. .++++++||+..... +...|+...+.+++|||||||+.....+.++++++++++.+.++||
T Consensus 194 ~~~~~~~~~~~~Gp~~~~~~--------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 259 (392)
T TIGR01426 194 AGETFDDSFTFVGPCIGDRK--------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVL 259 (392)
T ss_pred CccccCCCeEEECCCCCCcc--------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEE
Confidence 1113 344899999764321 1123666555678999999998766667888899999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccc
Q 045029 313 SLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM 392 (485)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 392 (485)
..+..... +.+ ...++|+.+.+|+||.++|+|+++ ||||||+||++||+++|+|+|++|.
T Consensus 260 ~~g~~~~~-----------------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~ 319 (392)
T TIGR01426 260 SVGRGVDP-----------------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQ 319 (392)
T ss_pred EECCCCCh-----------------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCC
Confidence 98765200 011 112367889999999999999888 9999999999999999999999999
Q ss_pred cccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHH
Q 045029 393 YAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSS 472 (485)
Q Consensus 393 ~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~ 472 (485)
..||+.||+++++. |+|+.+... .+++++|.++|+++++ |++|+++++++++.+++. +|. ..
T Consensus 320 ~~dq~~~a~~l~~~-g~g~~l~~~-----------~~~~~~l~~ai~~~l~-~~~~~~~~~~l~~~~~~~---~~~--~~ 381 (392)
T TIGR01426 320 GADQPMTARRIAEL-GLGRHLPPE-----------EVTAEKLREAVLAVLS-DPRYAERLRKMRAEIREA---GGA--RR 381 (392)
T ss_pred cccHHHHHHHHHHC-CCEEEeccc-----------cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHc---CCH--HH
Confidence 99999999998885 999988754 6899999999999999 789999999999999875 444 34
Q ss_pred HHHHHHHH
Q 045029 473 MGRLIDDF 480 (485)
Q Consensus 473 ~~~~~~~~ 480 (485)
+.++|.++
T Consensus 382 aa~~i~~~ 389 (392)
T TIGR01426 382 AADEIEGF 389 (392)
T ss_pred HHHHHHHh
Confidence 44555544
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.4e-42 Score=344.57 Aligned_cols=366 Identities=15% Similarity=0.170 Sum_probs=234.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCC-----CC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPD-----KE 78 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~-----~~ 78 (485)
+||+|+++|+.||++|+++||++|++|||+ |++++++ .+...+. ..|++|..+++.... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~--V~~~t~~--------~~~~~v~----~~G~~~~~~~~~~~~~~~~~~~ 66 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHE--VRVATPP--------EFADLVE----AAGLEFVPVGGDPDELLASPER 66 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCe--EEEeeCH--------hHHHHHH----HcCCceeeCCCCHHHHHhhhhh
Confidence 479999999999999999999999999999 7799987 5665555 568888888764210 00
Q ss_pred C--------CChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHH
Q 045029 79 S--------TPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGF 150 (485)
Q Consensus 79 ~--------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 150 (485)
. .........+.......+++.++.+. ..++|+||+|.+++++..+|+++|||++.+++++....+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~- 140 (401)
T cd03784 67 NAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAAR-----DWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS- 140 (401)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc-
Confidence 0 01111122222333333333333332 259999999998889999999999999998876642100
Q ss_pred HHHHhhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcCh-----hhhhH
Q 045029 151 MLRVQALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTF-----EELES 225 (485)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~le~ 225 (485)
... |.+ ........................+..++..|+-..+. .....
T Consensus 141 --------------------~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 194 (401)
T cd03784 141 --------------------AFP----PPL--GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELY 194 (401)
T ss_pred --------------------cCC----Ccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEE
Confidence 000 000 00000000000000001111122222223333211000 00000
Q ss_pred HHHHHhhCCCCCCCC-eEEec-cccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCH-HHHHHHHHH
Q 045029 226 HAVRSFSDGKSKTPP-LYPMG-PILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGE-DQVKEIACA 302 (485)
Q Consensus 226 ~~~~~~~~~~~~~p~-v~~vG-pl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~-~~~~~~~~a 302 (485)
.....+....+.+++ ...+| ++..... ....++++..|+++. +++|||+|||+..... +.+..++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a 264 (401)
T cd03784 195 GFSPAVLPPPPDWPRFDLVTGYGFRDVPY--------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEA 264 (401)
T ss_pred ecCcccCCCCCCccccCcEeCCCCCCCCC--------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHH
Confidence 001111111112232 55564 3322111 123467788898764 4699999999876554 456779999
Q ss_pred HHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHh
Q 045029 303 LEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIW 382 (485)
Q Consensus 303 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~ 382 (485)
++..+.++||++++.... . ...++|+++.+|+||.++|+|+++ ||||||+||++||++
T Consensus 265 ~~~~~~~~i~~~g~~~~~------------~--------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~ 322 (401)
T cd03784 265 VATLGQRAILSLGWGGLG------------A--------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALR 322 (401)
T ss_pred HHHcCCeEEEEccCcccc------------c--------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHH
Confidence 999999999999875210 0 122367899999999999999888 999999999999999
Q ss_pred hCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 045029 383 FGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARK 461 (485)
Q Consensus 383 ~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~ 461 (485)
+|||+|++|+..||+.||+++++. |+|+.++.. .++.++|.++|+++++ + +++++++++++.+++
T Consensus 323 ~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~~-----------~~~~~~l~~al~~~l~-~-~~~~~~~~~~~~~~~ 387 (401)
T cd03784 323 AGVPQLVVPFFGDQPFWAARVAEL-GAGPALDPR-----------ELTAERLAAALRRLLD-P-PSRRRAAALLRRIRE 387 (401)
T ss_pred cCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCcc-----------cCCHHHHHHHHHHHhC-H-HHHHHHHHHHHHHHh
Confidence 999999999999999999998885 999988755 6899999999999998 4 466777777777754
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-39 Score=317.76 Aligned_cols=387 Identities=16% Similarity=0.233 Sum_probs=238.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC--
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST-- 80 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~-- 80 (485)
++||+++..|+.||++|.++||++|.++||+ |+|++++ .|.+.++ ..++.|...+....+....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~ghe--V~~~~~~--------~~~~~ve----~ag~~f~~~~~~~~~~~~~~~ 66 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHE--VVFASTG--------KFKEFVE----AAGLAFVAYPIRDSELATEDG 66 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCe--EEEEeCH--------HHHHHHH----HhCcceeeccccCChhhhhhh
Confidence 3689999999999999999999999999999 7799988 7888776 5566666665432111111
Q ss_pred --ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhh
Q 045029 81 --PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALH 158 (485)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (485)
+....+............+.++-+.+ ..+|+++.|...... .+++..++|++............
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------- 132 (406)
T COG1819 67 KFAGVKSFRRLLQQFKKLIRELLELLRE-----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPA-------- 132 (406)
T ss_pred hhhccchhHHHhhhhhhhhHHHHHHHHh-----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcc--------
Confidence 11111111111112222233333333 378888877654444 78888999977643332211100
Q ss_pred ccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceE--EEcChhhhh--HH--HHHHhh
Q 045029 159 DEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGI--MVNTFEELE--SH--AVRSFS 232 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~le--~~--~~~~~~ 232 (485)
...+.....+-+.. ..+...++...........+.......+...++ ..+.+..+. .+ ...+..
T Consensus 133 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (406)
T COG1819 133 ---------AGLPLPPVGIAGKL-PIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTD 202 (406)
T ss_pred ---------cccCcccccccccc-cccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccc
Confidence 00000000000000 011111111111110000111111111111111 111100000 00 000000
Q ss_pred CCCC---CCCC-eEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCC
Q 045029 233 DGKS---KTPP-LYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGH 308 (485)
Q Consensus 233 ~~~~---~~p~-v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~ 308 (485)
...+ ..|. ..++||+... ...+...|... ++++|||||||.... .+.+..++++++.++.
T Consensus 203 ~~~~~~~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~ 266 (406)
T COG1819 203 VLFPPGDRLPFIGPYIGPLLGE-------------AANELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDV 266 (406)
T ss_pred cccCCCCCCCCCcCcccccccc-------------ccccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCc
Confidence 0000 1111 3344444322 22333444333 356999999998866 7888899999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEe
Q 045029 309 RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIA 388 (485)
Q Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v 388 (485)
++|..++... .. ...+| +|+++.+|+||..+|+++++ ||||||+|||+|||++|||+|
T Consensus 267 ~vi~~~~~~~-~~-----------~~~~p--------~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~v 324 (406)
T COG1819 267 RVIVSLGGAR-DT-----------LVNVP--------DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLV 324 (406)
T ss_pred EEEEeccccc-cc-----------cccCC--------CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEE
Confidence 9999987621 00 12233 67899999999999999999 999999999999999999999
Q ss_pred eccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCC
Q 045029 389 TWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGS 468 (485)
Q Consensus 389 ~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~ 468 (485)
++|...||+.||.|+++. |+|..+..+ .+|.+.|+++|+++|+ +++|+++++++++.+++. +|
T Consensus 325 v~P~~~DQ~~nA~rve~~-G~G~~l~~~-----------~l~~~~l~~av~~vL~-~~~~~~~~~~~~~~~~~~---~g- 387 (406)
T COG1819 325 VIPDGADQPLNAERVEEL-GAGIALPFE-----------ELTEERLRAAVNEVLA-DDSYRRAAERLAEEFKEE---DG- 387 (406)
T ss_pred EecCCcchhHHHHHHHHc-CCceecCcc-----------cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhc---cc-
Confidence 999999999999998885 999999876 7999999999999999 899999999999999997 55
Q ss_pred hHHHHHHHHHHHhhc
Q 045029 469 SFSSMGRLIDDFLDN 483 (485)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (485)
...+++.|+++..+
T Consensus 388 -~~~~a~~le~~~~~ 401 (406)
T COG1819 388 -PAKAADLLEEFARE 401 (406)
T ss_pred -HHHHHHHHHHHHhc
Confidence 56788888876654
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=1e-24 Score=212.14 Aligned_cols=324 Identities=16% Similarity=0.158 Sum_probs=197.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST 80 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~ 80 (485)
|+ +|++...++.||++|.+++|++|.++||+ |.|+++... .+.-. ....++.+..++.......
T Consensus 1 ~~--~i~~~~GGTGGHi~Pala~a~~l~~~g~~--v~~vg~~~~--------~e~~l--~~~~g~~~~~~~~~~l~~~-- 64 (352)
T PRK12446 1 MK--KIVFTGGGSAGHVTPNLAIIPYLKEDNWD--ISYIGSHQG--------IEKTI--IEKENIPYYSISSGKLRRY-- 64 (352)
T ss_pred CC--eEEEEcCCcHHHHHHHHHHHHHHHhCCCE--EEEEECCCc--------ccccc--CcccCCcEEEEeccCcCCC--
Confidence 66 59999999999999999999999999999 768876521 11110 1134677777764322111
Q ss_pred ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCc--hhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhh
Q 045029 81 PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFC--TCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALH 158 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 158 (485)
.....+...+.... .+...+. +++. .+||+||..... ..+..+|..+++|++++.....
T Consensus 65 ~~~~~~~~~~~~~~-~~~~~~~-i~~~----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~------------- 125 (352)
T PRK12446 65 FDLKNIKDPFLVMK-GVMDAYV-RIRK----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT------------- 125 (352)
T ss_pred chHHHHHHHHHHHH-HHHHHHH-HHHh----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC-------------
Confidence 11122222222221 1112222 2332 499999987643 3467889999999887533221
Q ss_pred ccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCCCC
Q 045029 159 DEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKT 238 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~ 238 (485)
|++.+ +...++ +. .+..+|++... .+ ..
T Consensus 126 -------------------~g~~n---------------------r~~~~~--a~-~v~~~f~~~~~----~~-----~~ 153 (352)
T PRK12446 126 -------------------PGLAN---------------------KIALRF--AS-KIFVTFEEAAK----HL-----PK 153 (352)
T ss_pred -------------------ccHHH---------------------HHHHHh--hC-EEEEEccchhh----hC-----CC
Confidence 22211 000011 11 22334432211 11 11
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHH-HHHHHHHHHhcCCceEEEEcCC
Q 045029 239 PPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQ-VKEIACALEQSGHRFLWSLRRP 317 (485)
Q Consensus 239 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~-~~~~~~al~~~~~~~l~~~~~~ 317 (485)
.++..+|+.+..... ....+.....+.-.+++++|+|..||......++ +.+++..+. .+.+++|++|.+
T Consensus 154 ~k~~~tG~Pvr~~~~--------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~ 224 (352)
T PRK12446 154 EKVIYTGSPVREEVL--------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKG 224 (352)
T ss_pred CCeEEECCcCCcccc--------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCc
Confidence 247889976543221 1111222222222234579999999988655543 444555543 248999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeec-c-hhhhhccCCccccccccCchhhHHHHhhCCcEeecccc--
Q 045029 318 PSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWA-P-QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY-- 393 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~-p-q~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~-- 393 (485)
. +.+. ... ..+..+.+|+ + -..++.++++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 225 ~-----------------~~~~-~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~ 283 (352)
T PRK12446 225 N-----------------LDDS-LQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKF 283 (352)
T ss_pred h-----------------HHHH-Hhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCC
Confidence 2 1010 001 1234555776 4 4468989998 99999999999999999999999985
Q ss_pred ---ccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 045029 394 ---AEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNS-EMRKRVKE 454 (485)
Q Consensus 394 ---~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~-~~r~~a~~ 454 (485)
.||..||..+++. |+|..+..+ .++++.|.++++++++ |+ .|++++++
T Consensus 284 ~~~~~Q~~Na~~l~~~-g~~~~l~~~-----------~~~~~~l~~~l~~ll~-~~~~~~~~~~~ 335 (352)
T PRK12446 284 ASRGDQILNAESFERQ-GYASVLYEE-----------DVTVNSLIKHVEELSH-NNEKYKTALKK 335 (352)
T ss_pred CCCchHHHHHHHHHHC-CCEEEcchh-----------cCCHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 4899999999986 999988754 7899999999999998 54 55554443
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.87 E-value=2.2e-20 Score=181.03 Aligned_cols=304 Identities=16% Similarity=0.212 Sum_probs=178.0
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCC-C-
Q 045029 4 AQLVFIPSP-GAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKES-T- 80 (485)
Q Consensus 4 ~~i~~~~~~-~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~-~- 80 (485)
|||++...+ +.||+...+.|+++| |||+ |++++.... ..+.+ ..+....++........ .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~--v~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~ 63 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHE--VTFITSGPA-----PEFLK--------PRFPVREIPGLGPIQENGRL 63 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCc--eEEEEcCCc-----HHHhc--------cccCEEEccCceEeccCCcc
Confidence 467777777 999999999999999 6999 668875511 12221 11233334322211111 0
Q ss_pred ChHhHHHHHH---HhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhh
Q 045029 81 PPKRFFGHFV---ESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQAL 157 (485)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 157 (485)
+....+.... ......+++.++.+.+ .+||+||+|. .+.+..+|+..|||++.+........
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~--------- 128 (318)
T PF13528_consen 64 DRWKTVRNNIRWLARLARRIRREIRWLRE-----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH--------- 128 (318)
T ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHh-----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc---------
Confidence 1112222211 1222333444444433 4899999995 44567889999999988765444200
Q ss_pred hccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHh--hcCCceEEEcChhhhhHHHHHHhhCCC
Q 045029 158 HDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQART--FRGTKGIMVNTFEELESHAVRSFSDGK 235 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~le~~~~~~~~~~~ 235 (485)
+... +... ......+.+.... +..+...+.-++. ... .
T Consensus 129 --------------------~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~-------~-- 168 (318)
T PF13528_consen 129 --------------------PNFW--LPWD--------QDFGRLIERYIDRYHFPPADRRLALSFY-PPL-------P-- 168 (318)
T ss_pred --------------------ccCC--cchh--------hhHHHHHHHhhhhccCCcccceecCCcc-ccc-------c--
Confidence 0000 0000 0001111111111 1112212222222 100 0
Q ss_pred CCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcC-CceEEEE
Q 045029 236 SKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSG-HRFLWSL 314 (485)
Q Consensus 236 ~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~ 314 (485)
...++..+||+....... .. . .+++.|+|+||..... .++++++..+ .++++.
T Consensus 169 -~~~~~~~~~p~~~~~~~~---------~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~- 222 (318)
T PF13528_consen 169 -PFFRVPFVGPIIRPEIRE---------LP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF- 222 (318)
T ss_pred -ccccccccCchhcccccc---------cC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-
Confidence 112355677776432210 00 0 1235899999986432 6667777765 566655
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeec--chhhhhccCCccccccccCchhhHHHHhhCCcEeeccc
Q 045029 315 RRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWA--PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM 392 (485)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~--pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 392 (485)
+... . - ...+|+.+.++. ...++|+.+++ +|||||+||++|++++|+|+|++|.
T Consensus 223 g~~~--------------~--~------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 223 GPNA--------------A--D------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPR 278 (318)
T ss_pred cCCc--------------c--c------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeC
Confidence 4431 0 0 113667888876 45668988888 9999999999999999999999999
Q ss_pred --cccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHH
Q 045029 393 --YAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCL 441 (485)
Q Consensus 393 --~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~v 441 (485)
..+|..||+++.+. |+|..++.. .++++.|+++|+++
T Consensus 279 ~~~~EQ~~~a~~l~~~-G~~~~~~~~-----------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 279 PGQDEQEYNARKLEEL-GLGIVLSQE-----------DLTPERLAEFLERL 317 (318)
T ss_pred CCCchHHHHHHHHHHC-CCeEEcccc-----------cCCHHHHHHHHhcC
Confidence 78999999998885 999998765 78999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=9.7e-20 Score=175.07 Aligned_cols=325 Identities=19% Similarity=0.199 Sum_probs=196.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHh
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKR 84 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~ 84 (485)
+|++...++.||+.|.++|+++|.++|++ .|.++.+. ...+... ....++.+..++........ . ..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~--------~~~e~~l--~~~~~~~~~~I~~~~~~~~~-~-~~ 68 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTG--------DGLEAFL--VKQYGIEFELIPSGGLRRKG-S-LK 68 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEeccc--------ccceeee--ccccCceEEEEecccccccC-c-HH
Confidence 58999999999999999999999999996 56677554 2222221 22347777777765432222 1 11
Q ss_pred HHHHHHHhhhh--hHHHHHHhhhhcCCCCCCccEEEECCC--chhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhcc
Q 045029 85 FFGHFVESKKP--HVKEVVANLTDESPDSPRLAGFVLDMF--CTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDE 160 (485)
Q Consensus 85 ~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
.+...+..... .....+++ .+||+||.-.. +..+..+|..+|||.++.-....
T Consensus 69 ~~~~~~~~~~~~~~a~~il~~--------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~--------------- 125 (357)
T COG0707 69 LLKAPFKLLKGVLQARKILKK--------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV--------------- 125 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC---------------
Confidence 22222222221 22233333 49999997443 45567788899999887543222
Q ss_pred ccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCCCCCC
Q 045029 161 ENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKTPP 240 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~p~ 240 (485)
||..+.+. .+.++.+ ..+|...+.- . ...+
T Consensus 126 -----------------~G~ank~~-----------------------~~~a~~V-~~~f~~~~~~----~-----~~~~ 155 (357)
T COG0707 126 -----------------PGLANKIL-----------------------SKFAKKV-ASAFPKLEAG----V-----KPEN 155 (357)
T ss_pred -----------------cchhHHHh-----------------------HHhhcee-eecccccccc----C-----CCCc
Confidence 33321110 0011111 2233221100 0 1113
Q ss_pred eEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHH-HHHHHHHHHhcCCceEEEEcCCCC
Q 045029 241 LYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQ-VKEIACALEQSGHRFLWSLRRPPS 319 (485)
Q Consensus 241 v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~-~~~~~~al~~~~~~~l~~~~~~~~ 319 (485)
++.+|-.+...-. . .+..-..+.... .+++|+|.-||+....-++ +.+++..+.+ +..+++.+|.+.
T Consensus 156 ~~~tG~Pvr~~~~--------~-~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~- 223 (357)
T COG0707 156 VVVTGIPVRPEFE--------E-LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND- 223 (357)
T ss_pred eEEecCcccHHhh--------c-cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-
Confidence 7777743322110 1 111111111111 3569999999987544443 3344444544 678888887651
Q ss_pred CCCCCCCCCCCCCCCCCChhhHhhhc-CC-cceEeecchhh-hhccCCccccccccCchhhHHHHhhCCcEeecccc---
Q 045029 320 KDTFEKPSDYEDPTEVLPEGFMDRTA-NI-GKVIGWAPQIA-VLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY--- 393 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-~~v~~~~pq~~-vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~--- 393 (485)
.+....... .+ +.+.+|..+.. +++.+++ +||+.|.+|+.|.+++|+|+|.+|+.
T Consensus 224 -----------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~ 284 (357)
T COG0707 224 -----------------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGA 284 (357)
T ss_pred -----------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCc
Confidence 011111111 12 55668886544 7877777 99999999999999999999999974
Q ss_pred -ccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 045029 394 -AEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKA 462 (485)
Q Consensus 394 -~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~ 462 (485)
.||..||..+++. |.|..++.. .+|.+++.+.|.++++ ++ ++.+++++..++.
T Consensus 285 ~~~Q~~NA~~l~~~-gaa~~i~~~-----------~lt~~~l~~~i~~l~~-~~---~~l~~m~~~a~~~ 338 (357)
T COG0707 285 DGHQEYNAKFLEKA-GAALVIRQS-----------ELTPEKLAELILRLLS-NP---EKLKAMAENAKKL 338 (357)
T ss_pred cchHHHHHHHHHhC-CCEEEeccc-----------cCCHHHHHHHHHHHhc-CH---HHHHHHHHHHHhc
Confidence 3899999999997 999999865 7899999999999998 53 4555555555554
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.85 E-value=2.7e-19 Score=173.05 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCcceEeecc--hhhhhccCCccccccccCchhhHHHHhhCCcEeeccccc--cchhhHHHHHHhhceeEEeeecccccc
Q 045029 346 NIGKVIGWAP--QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA--EQQFNAFELVVELGLAVEIKMDYRNDI 421 (485)
Q Consensus 346 ~~~~v~~~~p--q~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~r~~~~~g~G~~l~~~~~~~~ 421 (485)
+|+.+.+|.| ..+.|+.+++ +|||||++|++|++++|+|++++|..+ ||..||+.+++. |+|+.++..
T Consensus 229 ~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~----- 300 (321)
T TIGR00661 229 ENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK----- 300 (321)
T ss_pred CCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh-----
Confidence 5688889997 4456777766 999999999999999999999999965 899999999886 999988643
Q ss_pred cccCCcccCHHHHHHHHHHHhcCChHH
Q 045029 422 MIENPTVVNAEVIERGIRCLMEHNSEM 448 (485)
Q Consensus 422 ~~~~~~~~~~~~l~~av~~vl~~~~~~ 448 (485)
.+ ++.+++.++++ |+.|
T Consensus 301 ------~~---~~~~~~~~~~~-~~~~ 317 (321)
T TIGR00661 301 ------EL---RLLEAILDIRN-MKRY 317 (321)
T ss_pred ------hH---HHHHHHHhccc-cccc
Confidence 33 66667777777 5544
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.76 E-value=4.2e-16 Score=153.54 Aligned_cols=324 Identities=17% Similarity=0.101 Sum_probs=182.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChH
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPK 83 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~ 83 (485)
+||+|+..+..||....+.|++.|.++||+ |++++.+... ...... ..++++..++..... +. +..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~e--v~vv~~~~~~------~~~~~~----~~g~~~~~~~~~~~~-~~-~~~ 67 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWE--VLYLGTARGM------EARLVP----KAGIEFHFIPSGGLR-RK-GSL 67 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCE--EEEEECCCch------hhhccc----cCCCcEEEEeccCcC-CC-ChH
Confidence 579999998999999999999999999999 5577654210 011111 236666655432211 11 111
Q ss_pred hHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCC--chhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhccc
Q 045029 84 RFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMF--CTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEE 161 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 161 (485)
..+...... ...+... .+++++ .+||+|++... ...+..+++..++|.+.... ..
T Consensus 68 ~~l~~~~~~-~~~~~~~-~~~ik~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~---------------- 124 (357)
T PRK00726 68 ANLKAPFKL-LKGVLQA-RKILKR----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQ-NA---------------- 124 (357)
T ss_pred HHHHHHHHH-HHHHHHH-HHHHHh----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcC-CC----------------
Confidence 111111111 1122222 233333 48999998863 23344567778999875311 00
Q ss_pred cccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCCCCCCe
Q 045029 162 NTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKTPPL 241 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~p~v 241 (485)
.+++ ...+ . ++.++.++..+ ++. . .. . ...++
T Consensus 125 ---------------~~~~------------------~~r~---~--~~~~d~ii~~~-~~~---~---~~-~--~~~~i 156 (357)
T PRK00726 125 ---------------VPGL------------------ANKL---L--ARFAKKVATAF-PGA---F---PE-F--FKPKA 156 (357)
T ss_pred ---------------CccH------------------HHHH---H--HHHhchheECc-hhh---h---hc-c--CCCCE
Confidence 0000 0000 0 11122222222 111 0 00 1 33458
Q ss_pred EEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHH-HHHHHHhcCC--ceEEEEcCCC
Q 045029 242 YPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKE-IACALEQSGH--RFLWSLRRPP 318 (485)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~-~~~al~~~~~--~~l~~~~~~~ 318 (485)
..+|+.+...... . .... .. +...+...+|++..|+. ....... +.+++.+... .++|.+|...
T Consensus 157 ~vi~n~v~~~~~~-------~-~~~~-~~-~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~ 223 (357)
T PRK00726 157 VVTGNPVREEILA-------L-AAPP-AR-LAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGD 223 (357)
T ss_pred EEECCCCChHhhc-------c-cchh-hh-ccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCc
Confidence 8888655432210 0 0100 11 11112234666655553 2222333 3366655433 4556666542
Q ss_pred CCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEeec-chhhhhccCCccccccccCchhhHHHHhhCCcEeeccc---
Q 045029 319 SKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIGWA-PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM--- 392 (485)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~~~-pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~--- 392 (485)
. +...+. ..-++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|.
T Consensus 224 -----------------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~ 283 (357)
T PRK00726 224 -----------------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHA 283 (357)
T ss_pred -----------------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCC
Confidence 0 111111 11126677888 45679988888 9999999999999999999999997
Q ss_pred -cccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 045029 393 -YAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEK 458 (485)
Q Consensus 393 -~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~ 458 (485)
.+||..|+..+.+. |.|..+..+ .++++.|+++|+++++ |++++++..+-++.
T Consensus 284 ~~~~~~~~~~~i~~~-~~g~~~~~~-----------~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~ 337 (357)
T PRK00726 284 ADDHQTANARALVDA-GAALLIPQS-----------DLTPEKLAEKLLELLS-DPERLEAMAEAARA 337 (357)
T ss_pred CcCcHHHHHHHHHHC-CCEEEEEcc-----------cCCHHHHHHHHHHHHc-CHHHHHHHHHHHHh
Confidence 36899999998886 999998754 5689999999999999 77776655444433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.72 E-value=3.4e-15 Score=146.74 Aligned_cols=323 Identities=18% Similarity=0.140 Sum_probs=181.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHh
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKR 84 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~ 84 (485)
||++...+..||+...+.|++.|.++||+ |++++..... ..... ...++++..++..... +. ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~e--v~v~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~-~~-~~~~ 66 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAE--VLFLGTKRGL------EARLV----PKAGIPLHTIPVGGLR-RK-GSLK 66 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCE--EEEEECCCcc------hhhcc----cccCCceEEEEecCcC-CC-ChHH
Confidence 58999999999999999999999999999 6677654211 11111 1235666655543211 11 1112
Q ss_pred HHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCC--chhHHHHHHHcCCCeEEEechhHHHHHHHHHHhhhhcccc
Q 045029 85 FFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMF--CTCMIEVADEFKVPSYLFFTSGAAFLGFMLRVQALHDEEN 162 (485)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 162 (485)
.+..++.. ...+.. +.++.++ .+||+|++... ...+..+|...++|++.... ..
T Consensus 67 ~~~~~~~~-~~~~~~-~~~~i~~----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~-~~----------------- 122 (350)
T cd03785 67 KLKAPFKL-LKGVLQ-ARKILKK----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ-NA----------------- 122 (350)
T ss_pred HHHHHHHH-HHHHHH-HHHHHHh----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcC-CC-----------------
Confidence 22222211 111112 2233333 48999998653 33456678889999875311 00
Q ss_pred ccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEEcChhhhhHHHHHHhhCCCCCCCCeE
Q 045029 163 TTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMVNTFEELESHAVRSFSDGKSKTPPLY 242 (485)
Q Consensus 163 ~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~p~v~ 242 (485)
.+++ ...+ ..+..+.++..+-...+. + ...++.
T Consensus 123 --------------~~~~------------------~~~~-----~~~~~~~vi~~s~~~~~~-----~-----~~~~~~ 155 (350)
T cd03785 123 --------------VPGL------------------ANRL-----LARFADRVALSFPETAKY-----F-----PKDKAV 155 (350)
T ss_pred --------------CccH------------------HHHH-----HHHhhCEEEEcchhhhhc-----C-----CCCcEE
Confidence 0000 0000 011234444433222111 0 223477
Q ss_pred EeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCH-HHHHHHHHHHHhcCCceEEEEcCCCCCC
Q 045029 243 PMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGE-DQVKEIACALEQSGHRFLWSLRRPPSKD 321 (485)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~ 321 (485)
.+|..+..... .. .+. .+.+...+++.+|++..|+...... +.+.+++..+...+..+++.+|...
T Consensus 156 ~i~n~v~~~~~--------~~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--- 222 (350)
T cd03785 156 VTGNPVREEIL--------AL-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--- 222 (350)
T ss_pred EECCCCchHHh--------hh-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc---
Confidence 77765432211 00 111 2222222234466665666432211 1223344444433455666666541
Q ss_pred CCCCCCCCCCCCCCCChhhHhhhcCCcceEeec-chhhhhccCCccccccccCchhhHHHHhhCCcEeeccc----cccc
Q 045029 322 TFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWA-PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM----YAEQ 396 (485)
Q Consensus 322 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~-pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~----~~DQ 396 (485)
.+.+.+...+. .+++.+.+|+ ....+|+.+++ +|+|+|.++++||+++|+|+|+.|. ..+|
T Consensus 223 -----------~~~l~~~~~~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 223 -----------LEEVKKAYEEL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred -----------HHHHHHHHhcc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 01111111111 3578888988 55668988888 9999999999999999999999986 3578
Q ss_pred hhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHH
Q 045029 397 QFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRV 452 (485)
Q Consensus 397 ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a 452 (485)
..|+..+.+. |.|..++.. ..+.+++.++|+++++ +++.+++.
T Consensus 289 ~~~~~~l~~~-g~g~~v~~~-----------~~~~~~l~~~i~~ll~-~~~~~~~~ 331 (350)
T cd03785 289 TANARALVKA-GAAVLIPQE-----------ELTPERLAAALLELLS-DPERLKAM 331 (350)
T ss_pred HHhHHHHHhC-CCEEEEecC-----------CCCHHHHHHHHHHHhc-CHHHHHHH
Confidence 9999998886 999888643 4589999999999998 66555443
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=1.6e-14 Score=142.76 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=85.9
Q ss_pred hhhhhccCCccccccccCchhhHHHHhhCCcEeec----cccc---------cchhhHHHHHHhhceeEEeeeccccccc
Q 045029 356 QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW----PMYA---------EQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 356 q~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
...+++.+++ +|+-.|..|+ |++++|+|+|++ |+.. +|..|+..++.+ ++...+.-+
T Consensus 261 ~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~------ 330 (385)
T TIGR00215 261 ARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQE------ 330 (385)
T ss_pred HHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCC------
Confidence 3458888888 9999999887 999999999999 8652 288899988887 888877544
Q ss_pred ccCCcccCHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNS----EMRKRVKEMSEKARKALSDGGSSFSSMGRLI 477 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~----~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~ 477 (485)
.+|++.|.+++.++++ |+ +++++.++--+.+++.++++|.+.+..+..+
T Consensus 331 -----~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 331 -----ECTPHPLAIALLLLLE-NGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred -----CCCHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 6899999999999998 77 7787777777777777777777776655443
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.58 E-value=2.3e-12 Score=126.58 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=71.3
Q ss_pred chhhhhccCCccccccccCchhhHHHHhhCCcEeecccc---ccchhhHHHHHHhhceeEEeeecccccccccCCcccCH
Q 045029 355 PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY---AEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNA 431 (485)
Q Consensus 355 pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~ 431 (485)
.-..+|+.+++ +|+++|.++++||+++|+|+|+.|.. .+|..|+..+.+. |.|..++.. ..+.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~-----------~~~~ 308 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQK-----------ELLP 308 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEecc-----------cCCH
Confidence 45678988888 99999988999999999999999863 4778888887775 999887643 4579
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 045029 432 EVIERGIRCLMEHNSEMRKRVKEMSEKARKA 462 (485)
Q Consensus 432 ~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~ 462 (485)
++|.++++++++ |++.+++ +++..++.
T Consensus 309 ~~l~~~i~~ll~-~~~~~~~---~~~~~~~~ 335 (348)
T TIGR01133 309 EKLLEALLKLLL-DPANLEA---MAEAARKL 335 (348)
T ss_pred HHHHHHHHHHHc-CHHHHHH---HHHHHHhc
Confidence 999999999998 7765544 44444443
No 36
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.54 E-value=1.7e-12 Score=129.06 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=64.8
Q ss_pred hhhhccCCccccccccCchhhHHHHhhCCcEeeccccccch--------hh-----HHHHHHhhceeEEeeecccccccc
Q 045029 357 IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQ--------FN-----AFELVVELGLAVEIKMDYRNDIMI 423 (485)
Q Consensus 357 ~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~--------~n-----a~r~~~~~g~G~~l~~~~~~~~~~ 423 (485)
..+++.+++ +|+.+|.+++ |++++|+|+|+.|-..--+ .| +..+++. +++..+...
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~------- 324 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQE------- 324 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCC-------
Confidence 457888888 9999998877 9999999999995432111 11 1111121 222222222
Q ss_pred cCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 424 ENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
..+++++.+++.++++ |++.+++..+-.+.+++.. ..|++.+.++.+.+
T Consensus 325 ----~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 325 ----EATPEKLARALLPLLA-DGARRQALLEGFTELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred ----CCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 5688999999999999 7766665555444444444 33454444444443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.54 E-value=2.8e-12 Score=127.45 Aligned_cols=164 Identities=17% Similarity=0.253 Sum_probs=106.1
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecc
Q 045029 277 ESSVVFLCFGSWGSFGEDQVKEIACALEQS-GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAP 355 (485)
Q Consensus 277 ~~~~vyvs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~p 355 (485)
++++|++.-|+.... ..+..+++++.+. +.+++++.|.+.. +...+ +.......+++.+.+|++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------------~~~~l-~~~~~~~~~~v~~~g~~~ 265 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------------LKQSL-EDLQETNPDALKVFGYVE 265 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------------HHHHH-HHHHhcCCCcEEEEechh
Confidence 345777777876432 2356677777654 5677777664310 00000 011111224688889998
Q ss_pred hh-hhhccCCccccccccCchhhHHHHhhCCcEeec-cccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHH
Q 045029 356 QI-AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW-PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEV 433 (485)
Q Consensus 356 q~-~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~ 433 (485)
+. .++..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+.. -+.++
T Consensus 266 ~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---------------~~~~~ 327 (380)
T PRK13609 266 NIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---------------RDDEE 327 (380)
T ss_pred hHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---------------CCHHH
Confidence 74 68988888 99999988999999999999995 6777788898877765 888753 25789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 434 IERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 434 l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
+.++|+++++ |++.+++ +++..++. ....+....++.+++
T Consensus 328 l~~~i~~ll~-~~~~~~~---m~~~~~~~-~~~~s~~~i~~~i~~ 367 (380)
T PRK13609 328 VFAKTEALLQ-DDMKLLQ---MKEAMKSL-YLPEPADHIVDDILA 367 (380)
T ss_pred HHHHHHHHHC-CHHHHHH---HHHHHHHh-CCCchHHHHHHHHHH
Confidence 9999999998 6655544 33444433 223344444444443
No 38
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.47 E-value=4.4e-15 Score=129.40 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=96.4
Q ss_pred EEEEeecCcccCCHHH-HHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecc-
Q 045029 280 VVFLCFGSWGSFGEDQ-VKEIACALEQ--SGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAP- 355 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~-~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~p- 355 (485)
+|+|+.||.....-.. +..++..+.. ...++++++|.... ...... + .+...++.+.+|++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~-------------~~~~~~-~-~~~~~~v~~~~~~~~ 65 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY-------------EELKIK-V-ENFNPNVKVFGFVDN 65 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC-------------HHHCCC-H-CCTTCCCEEECSSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH-------------HHHHHH-H-hccCCcEEEEechhh
Confidence 5899999865321221 2334444433 25789999886520 000111 1 11115688899999
Q ss_pred hhhhhccCCccccccccCchhhHHHHhhCCcEeeccccc----cchhhHHHHHHhhceeEEeeecccccccccCCcccCH
Q 045029 356 QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA----EQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNA 431 (485)
Q Consensus 356 q~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~ 431 (485)
...++..+++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+... ..+.
T Consensus 66 m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~-----------~~~~ 131 (167)
T PF04101_consen 66 MAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES-----------ELNP 131 (167)
T ss_dssp HHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC-----------C-SC
T ss_pred HHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc-----------cCCH
Confidence 7779999998 999999999999999999999999988 999999999997 999888754 6778
Q ss_pred HHHHHHHHHHhcCChH
Q 045029 432 EVIERGIRCLMEHNSE 447 (485)
Q Consensus 432 ~~l~~av~~vl~~~~~ 447 (485)
+.|.++|++++. ++.
T Consensus 132 ~~L~~~i~~l~~-~~~ 146 (167)
T PF04101_consen 132 EELAEAIEELLS-DPE 146 (167)
T ss_dssp CCHHHHHHCHCC-CHH
T ss_pred HHHHHHHHHHHc-CcH
Confidence 999999999998 553
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.44 E-value=1.9e-11 Score=115.32 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=76.1
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEeec
Q 045029 279 SVVFLCFGSWGSFGEDQVKEIACALEQS--GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIGWA 354 (485)
Q Consensus 279 ~~vyvs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~~~ 354 (485)
+.|+|+||..... .....+++++.+. +.++.+++|... ...+.+.+. ...|+.+..++
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~----------------~~~~~l~~~~~~~~~i~~~~~~ 232 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSN----------------PNLDELKKFAKEYPNIILFIDV 232 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCC----------------cCHHHHHHHHHhCCCEEEEeCH
Confidence 4789999864432 2345566777653 567888887652 011222221 23568888999
Q ss_pred chh-hhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHH
Q 045029 355 PQI-AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFE 402 (485)
Q Consensus 355 pq~-~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r 402 (485)
++. .++..+++ +||+|| +|++|++++|+|+|++|...+|..||+.
T Consensus 233 ~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 233 ENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 876 69989888 999999 9999999999999999999999999864
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.41 E-value=4.3e-10 Score=111.91 Aligned_cols=161 Identities=11% Similarity=0.174 Sum_probs=105.0
Q ss_pred CCcEEEEeecCcccCCHHHHHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEe
Q 045029 277 ESSVVFLCFGSWGSFGEDQVKEIACALEQ--SGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIG 352 (485)
Q Consensus 277 ~~~~vyvs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~ 352 (485)
++++|++..|+... ...+..+++++.+ .+.+++++.|.+. .+-+...+. ..+++.+.+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~----------------~l~~~l~~~~~~~~~v~~~G 262 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK----------------ELKRSLTAKFKSNENVLILG 262 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH----------------HHHHHHHHHhccCCCeEEEe
Confidence 34588888888752 1334555555432 3467777766441 010111111 124677889
Q ss_pred ecchh-hhhccCCccccccccCchhhHHHHhhCCcEeec-cccccchhhHHHHHHhhceeEEeeecccccccccCCcccC
Q 045029 353 WAPQI-AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW-PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVN 430 (485)
Q Consensus 353 ~~pq~-~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~ 430 (485)
|+.+. .++..+++ ||+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+... +
T Consensus 263 ~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---------------~ 324 (391)
T PRK13608 263 YTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---------------T 324 (391)
T ss_pred ccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---------------C
Confidence 99654 48888888 99998888999999999999998 7777778999887776 9997642 6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 431 AEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 431 ~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
.+++.++|.++++ |++.+ +++++.+++.. ...+....++.+++
T Consensus 325 ~~~l~~~i~~ll~-~~~~~---~~m~~~~~~~~-~~~s~~~i~~~l~~ 367 (391)
T PRK13608 325 PEEAIKIVASLTN-GNEQL---TNMISTMEQDK-IKYATQTICRDLLD 367 (391)
T ss_pred HHHHHHHHHHHhc-CHHHH---HHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 7889999999998 66433 34455555432 23444444444433
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.38 E-value=3e-09 Score=105.71 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=74.3
Q ss_pred CCcceEeecchhh-hhccCCccccccccCchhhHHHHhhCCcEeeccccccch-hhHHHHHHhhceeEEeeecccccccc
Q 045029 346 NIGKVIGWAPQIA-VLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQ-FNAFELVVELGLAVEIKMDYRNDIMI 423 (485)
Q Consensus 346 ~~~~v~~~~pq~~-vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~-~na~r~~~~~g~G~~l~~~~~~~~~~ 423 (485)
.++.+.+|+++.. +++.+++ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+.+. |.|+.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---------- 331 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---------- 331 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec----------
Confidence 4577889988544 8888888 999999999999999999999998776775 688888776 999753
Q ss_pred cCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 045029 424 ENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKA 462 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~ 462 (485)
-+.+++.++|.++++++++.+ +++++..++.
T Consensus 332 -----~~~~~la~~i~~ll~~~~~~~---~~m~~~~~~~ 362 (382)
T PLN02605 332 -----ESPKEIARIVAEWFGDKSDEL---EAMSENALKL 362 (382)
T ss_pred -----CCHHHHHHHHHHHHcCCHHHH---HHHHHHHHHh
Confidence 268899999999998325433 3455555554
No 42
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.32 E-value=1.4e-09 Score=100.34 Aligned_cols=332 Identities=16% Similarity=0.193 Sum_probs=182.0
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCC-CC
Q 045029 3 KAQLVFIPSP--GAGHLVSTVEVARLLVDR--DDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQP-DK 77 (485)
Q Consensus 3 ~~~i~~~~~~--~~GH~~P~l~La~~L~~r--GH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~-~~ 77 (485)
.+||+|++.- +-||..-...+|++|.+. |.+ |++++...+.. .| ....+++|+.+|.... ..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~--Il~IsG~~~~~----~F-------~~~~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD--ILIISGGPPAG----GF-------PGPAGVDFVKLPSLIKGDN 75 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCce--EEEEeCCCccC----CC-------CCcccCceEecCceEecCC
Confidence 3499999876 779999999999999998 866 77887653211 11 2346899999986542 11
Q ss_pred CCC---ChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHHHHHHHHHH
Q 045029 78 EST---PPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAAFLGFMLRV 154 (485)
Q Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 154 (485)
+.. +.......+.+.-...+....+. .+||++|+|.+-.+.. -|.+ | . ..++
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~~~--------fkPDi~IVd~~P~Glr--~EL~--p--------t-----L~yl 130 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTAET--------FKPDIFIVDKFPFGLR--FELL--P--------T-----LEYL 130 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHHHh--------cCCCEEEEeccccchh--hhhh--H--------H-----HHHH
Confidence 221 11111333333222233333332 4999999998654411 1100 0 0 0000
Q ss_pred hhhhccccccccccCCCCCccccCCCCCCCCCCCCCccccCccHHHHHHHHHHhhcCCceEEE---cChhhhhHHHHHHh
Q 045029 155 QALHDEENTTITELKDSDAVLEVPGLVNSVPAKVWPSVVFNKEWAEVLNQQARTFRGTKGIMV---NTFEELESHAVRSF 231 (485)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~le~~~~~~~ 231 (485)
...+ ...+-++ -...+.+......+.-....+.++++ .+.+++ +.|.++...+....
T Consensus 131 ---~~~~------------t~~vL~l---r~i~D~p~~~~~~w~~~~~~~~I~r~--yD~V~v~GdP~f~d~~~~~~~~~ 190 (400)
T COG4671 131 ---KTTG------------TRLVLGL---RSIRDIPQELEADWRRAETVRLINRF--YDLVLVYGDPDFYDPLTEFPFAP 190 (400)
T ss_pred ---hhcC------------Ccceeeh---HhhhhchhhhccchhhhHHHHHHHHh--heEEEEecCccccChhhcCCccH
Confidence 0000 0000000 00112222221111111112222221 122333 33444433221000
Q ss_pred hCCCCCCCCeEEeccccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHh-cCCc-
Q 045029 232 SDGKSKTPPLYPMGPILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQ-SGHR- 309 (485)
Q Consensus 232 ~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~-~~~~- 309 (485)
. .-.++.++|-+...-+. .+++.. . .+++--|.||-|-- ....+.+...+.|-.. .+.+
T Consensus 191 ~----i~~k~~ytG~vq~~~~~--------~~~p~~-----~-~pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 191 A----IRAKMRYTGFVQRSLPH--------LPLPPH-----E-APEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNH 251 (400)
T ss_pred h----hhhheeEeEEeeccCcC--------CCCCCc-----C-CCccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCc
Confidence 0 11248999987221110 011100 0 02334788877662 2344556666666543 3443
Q ss_pred -eEEEEcCCCCCCCCCCCCCCCCCCCCCChhh----Hhhhc--CCcceEeecchh-hhhccCCccccccccCchhhHHHH
Q 045029 310 -FLWSLRRPPSKDTFEKPSDYEDPTEVLPEGF----MDRTA--NIGKVIGWAPQI-AVLAHPAIGGFVSHCGWNSTLESI 381 (485)
Q Consensus 310 -~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~--~~~~v~~~~pq~-~vL~h~~~~~~itHgG~~s~~eal 381 (485)
.+..+|.. .|+.- ..... +++.+..|-.+. .++.-+.. +|+-||+|||+|-|
T Consensus 252 ~~~ivtGP~------------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeIL 311 (400)
T COG4671 252 KWLIVTGPF------------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEIL 311 (400)
T ss_pred ceEEEeCCC------------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHH
Confidence 56666644 45332 22223 567888887654 47877777 99999999999999
Q ss_pred hhCCcEeecccc---ccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhc
Q 045029 382 WFGVPIATWPMY---AEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 382 ~~GvP~v~~P~~---~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
++|+|-+++|.. .+|-.-|.|+++ +|+.-.+..+ .+|+..++++|...++
T Consensus 312 s~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe-----------~lt~~~La~al~~~l~ 364 (400)
T COG4671 312 SFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPE-----------NLTPQNLADALKAALA 364 (400)
T ss_pred hCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCcc-----------cCChHHHHHHHHhccc
Confidence 999999999986 399999999887 5988777655 7899999999999887
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=3.3e-12 Score=107.70 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=78.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCC-CCCCCCCChHh
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDD-QPDKESTPPKR 84 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~-~~~~~~~~~~~ 84 (485)
|+|.+.|+.||++|+++||++|++|||+ |++++++ .+.+.+. ..|++|..++.. ..+... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~--V~~~~~~--------~~~~~v~----~~Gl~~~~~~~~~~~~~~~-~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHE--VRLATPP--------DFRERVE----AAGLEFVPIPGDSRLPRSL-EPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-E--EEEEETG--------GGHHHHH----HTT-EEEESSSCGGGGHHH-HHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCe--EEEeecc--------cceeccc----ccCceEEEecCCcCcCccc-chhh
Confidence 7899999999999999999999999999 6688887 6666665 679999998776 111100 0111
Q ss_pred HHHHHHH------hhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhHH
Q 045029 85 FFGHFVE------SKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGAA 146 (485)
Q Consensus 85 ~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 146 (485)
.+..... .....+.+...+...........|+++.+.....+..+||++|||++.....+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111111 1111111211111111011235777888887788889999999999998776653
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.26 E-value=8.6e-09 Score=102.19 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=97.5
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHHhc----CCceEEEEcCCCCCCCCCCCCCCCCCCCCCCh-hhHhh---------
Q 045029 278 SSVVFLCFGSWGSFGEDQVKEIACALEQS----GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPE-GFMDR--------- 343 (485)
Q Consensus 278 ~~~vyvs~GS~~~~~~~~~~~~~~al~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~--------- 343 (485)
.++|.+--||....-.+.+..++++++.. +..|++.+.++... +.+...+.+ ++...
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~---------~~~~~~l~~~g~~~~~~~~~~~~~ 275 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL---------EKLQAILEDLGWQLEGSSEDQTSL 275 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH---------HHHHHHHHhcCceecCCccccchh
Confidence 35888888997533333344555555543 67888887433100 000000000 00000
Q ss_pred -hcCCcceEeec-chhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHh---hceeEEeeeccc
Q 045029 344 -TANIGKVIGWA-PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVE---LGLAVEIKMDYR 418 (485)
Q Consensus 344 -~~~~~~v~~~~-pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~---~g~G~~l~~~~~ 418 (485)
..+++.+..+. .-..+++.+++ +|+-.|..| .|+...|+|+|++|+-..|. |+..+.+. .|.++.+.
T Consensus 276 ~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~---- 347 (396)
T TIGR03492 276 FQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA---- 347 (396)
T ss_pred hccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC----
Confidence 00123444444 34568888888 999999766 99999999999999877776 88654431 15555553
Q ss_pred ccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHH
Q 045029 419 NDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMG 474 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~ 474 (485)
..+.+.|.+++.++++ |++.+++.. +..++.+.+++++.+..+
T Consensus 348 ---------~~~~~~l~~~l~~ll~-d~~~~~~~~---~~~~~~lg~~~a~~~ia~ 390 (396)
T TIGR03492 348 ---------SKNPEQAAQVVRQLLA-DPELLERCR---RNGQERMGPPGASARIAE 390 (396)
T ss_pred ---------CCCHHHHHHHHHHHHc-CHHHHHHHH---HHHHHhcCCCCHHHHHHH
Confidence 2355999999999998 665554433 233333444555554443
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.14 E-value=8.4e-08 Score=94.19 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=65.1
Q ss_pred cCCcceEeecchhh---hhccCCccccccccC----chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
.+++.+.+|+++.. ++..+++ +|..+. .++++||+++|+|+|+.+..+ +...+.+. +.|...+
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~--- 315 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVE--- 315 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcC---
Confidence 35788889998766 6888888 776654 478999999999999987654 34344444 7887765
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChHHHHHHH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVK 453 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~ 453 (485)
.-+.+++.++|.++++ +++.+++..
T Consensus 316 ----------~~~~~~l~~~i~~l~~-~~~~~~~~~ 340 (364)
T cd03814 316 ----------PGDAEAFAAALAALLA-DPELRRRMA 340 (364)
T ss_pred ----------CCCHHHHHHHHHHHHc-CHHHHHHHH
Confidence 3467889999999998 665544433
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.01 E-value=1.4e-06 Score=89.10 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=80.3
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-cCCcceEeecchh
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQS-GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-ANIGKVIGWAPQI 357 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~v~~~~pq~ 357 (485)
.+++..|+.. ....+..++++++.. +.+++++-++. ..+.+.+.. ..++.+.+++|+.
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~------------------~~~~l~~~~~~~~V~f~G~v~~~ 323 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP------------------YREELEKMFAGTPTVFTGMLQGD 323 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh------------------HHHHHHHHhccCCeEEeccCCHH
Confidence 4555668754 223356677777765 56666543222 011221111 2467788999865
Q ss_pred h---hhccCCccccccccC----chhhHHHHhhCCcEeeccccccchhhHHHHHH--hhceeEEeeecccccccccCCcc
Q 045029 358 A---VLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQQFNAFELVV--ELGLAVEIKMDYRNDIMIENPTV 428 (485)
Q Consensus 358 ~---vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~--~~g~G~~l~~~~~~~~~~~~~~~ 428 (485)
+ ++..+++ ||.-.. -++++||+++|+|+|+....+ ....+.+ .-+.|..++.
T Consensus 324 ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~------------- 384 (465)
T PLN02871 324 ELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP------------- 384 (465)
T ss_pred HHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC-------------
Confidence 5 6777777 774332 346899999999999876542 2222223 1277877752
Q ss_pred cCHHHHHHHHHHHhcCChHHHHH
Q 045029 429 VNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
-+.++++++|.++++ |++.+++
T Consensus 385 ~d~~~la~~i~~ll~-~~~~~~~ 406 (465)
T PLN02871 385 GDVDDCVEKLETLLA-DPELRER 406 (465)
T ss_pred CCHHHHHHHHHHHHh-CHHHHHH
Confidence 368899999999998 6654433
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.00 E-value=1e-06 Score=86.17 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=60.2
Q ss_pred CCcceEeecchhh---hhccCCccccccc--cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSH--CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itH--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
+++.+.+|+++.. ++..+++.++-++ .|+ .++.||+++|+|+|+.+.. .+...+.+. +.|..++
T Consensus 243 ~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~----- 312 (359)
T cd03823 243 PRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFP----- 312 (359)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEEC-----
Confidence 5678889997665 5878888333332 344 4799999999999997654 344444443 5787765
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
.-+.++++++++++++ +++.++.
T Consensus 313 --------~~d~~~l~~~i~~l~~-~~~~~~~ 335 (359)
T cd03823 313 --------PGDAEDLAAALERLID-DPDLLER 335 (359)
T ss_pred --------CCCHHHHHHHHHHHHh-ChHHHHH
Confidence 2368999999999998 6644333
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.99 E-value=8.1e-07 Score=88.68 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=59.8
Q ss_pred CCcceEeecchhh---hhccCCcccccccc---C-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSHC---G-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYR 418 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~ 418 (485)
+++.+.+|+|+.+ ++..+++ ++... | -.+++||+++|+|+|+-...+ ....+.+. +.|..++
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~~~~---- 351 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGLLVD---- 351 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeEEeC----
Confidence 5678889999866 4778888 66432 2 358999999999999876543 33344443 6887765
Q ss_pred ccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 419 NDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
.-+.++++++|.++++ +++.+
T Consensus 352 ---------~~~~~~l~~~i~~l~~-~~~~~ 372 (398)
T cd03800 352 ---------PRDPEALAAALRRLLT-DPALR 372 (398)
T ss_pred ---------CCCHHHHHHHHHHHHh-CHHHH
Confidence 3468999999999998 55433
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.92 E-value=8e-07 Score=87.78 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=59.7
Q ss_pred CCcceEeecchhh---hhccCCccccccccC---------chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEe
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSHCG---------WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEI 413 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itHgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l 413 (485)
.++.+.+++++.. ++..+++ +|.... -+++.||+++|+|+|+.+..+.+... .+. +.|..+
T Consensus 275 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~~ 347 (394)
T cd03794 275 DNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLVV 347 (394)
T ss_pred CcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceEe
Confidence 5678889998665 6777887 553322 23479999999999999887655432 232 667666
Q ss_pred eecccccccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 414 KMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
+ .-+.++++++|.++++ |++.+++
T Consensus 348 ~-------------~~~~~~l~~~i~~~~~-~~~~~~~ 371 (394)
T cd03794 348 P-------------PGDPEALAAAILELLD-DPEERAE 371 (394)
T ss_pred C-------------CCCHHHHHHHHHHHHh-ChHHHHH
Confidence 4 2378999999999997 5544443
No 50
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.84 E-value=9.9e-06 Score=81.83 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=54.6
Q ss_pred hhhccCCccccccc-----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHH
Q 045029 358 AVLAHPAIGGFVSH-----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAE 432 (485)
Q Consensus 358 ~vL~h~~~~~~itH-----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~ 432 (485)
.+++.+++ ++.. +|-.+++||+++|+|+|+-|..+++......+.+. |+++.. -+.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---------------~d~~ 376 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---------------EDAE 376 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---------------CCHH
Confidence 46667776 3321 34445999999999999999988888877665554 766543 2678
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 045029 433 VIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 433 ~l~~av~~vl~~~~~~r~~ 451 (485)
+++++|.++++ |++.+++
T Consensus 377 ~La~~l~~ll~-~~~~~~~ 394 (425)
T PRK05749 377 DLAKAVTYLLT-DPDARQA 394 (425)
T ss_pred HHHHHHHHHhc-CHHHHHH
Confidence 99999999998 6654444
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.82 E-value=5.4e-06 Score=81.40 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=57.2
Q ss_pred cCCcceEeecchhh---hhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
.+++.+.+++|+.. ++..+++ +|.. +.-+++.||+++|+|+|+.... ..+..+.+. +.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADG-ENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecC-ceeEEeCCC-
Confidence 35678889998765 5778888 5533 3346899999999999987643 344444443 677766522
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
+. ++.+++.++++ +++
T Consensus 330 ------------~~-~~~~~i~~l~~-~~~ 345 (374)
T cd03817 330 ------------DE-ALAEALLRLLQ-DPE 345 (374)
T ss_pred ------------CH-HHHHHHHHHHh-ChH
Confidence 22 89999999998 554
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.80 E-value=3.5e-05 Score=77.10 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=59.0
Q ss_pred CCcceEeecchhh---hhccCCccccccc-cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSH-CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itH-gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+++|+.. +|..+++-++.+. .|. .+++||+++|+|+|+... ......+... ..|..++
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~------ 349 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVD------ 349 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcC------
Confidence 5688889999765 5667787333333 232 479999999999998644 3344343333 5677664
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCChHHHH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNSEMRK 450 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~~~r~ 450 (485)
.-+.++++++|.++++ +++.++
T Consensus 350 -------~~d~~~la~~i~~ll~-~~~~~~ 371 (396)
T cd03818 350 -------FFDPDALAAAVIELLD-DPARRA 371 (396)
T ss_pred -------CCCHHHHHHHHHHHHh-CHHHHH
Confidence 3478999999999998 664433
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.74 E-value=4.6e-05 Score=74.27 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred cCCcceEeecchhh---hhccCCcccccc--ccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVS--HCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~it--HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
.+++.+.+++++.+ ++..+++.++.+ -|.-+++.||+++|+|+|+.+. ..+...+... +.|..++
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~----- 324 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVP----- 324 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeC-----
Confidence 46788889997554 677888733222 2456689999999999998766 3344444434 6777665
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCChHHHH
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNSEMRK 450 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~ 450 (485)
..+.+++.++|.++++ +++.++
T Consensus 325 --------~~~~~~l~~~i~~~~~-~~~~~~ 346 (374)
T cd03801 325 --------PGDPEALAEAILRLLD-DPELRR 346 (374)
T ss_pred --------CCCHHHHHHHHHHHHc-ChHHHH
Confidence 3468999999999998 554443
No 54
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.74 E-value=2.1e-05 Score=77.12 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=83.2
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHh-----hhcCCcceEee
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQSG-HRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMD-----RTANIGKVIGW 353 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~v~~~ 353 (485)
.+++..|+.. ....+..+++++++.. .++++...+. ..+.+.+ ....++.+.+|
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~------------------~~~~~~~~~~~~~~~~~V~~~g~ 251 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP------------------LEAELEALAAALGLLDRVRFLGR 251 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh------------------hHHHHHHHHHhcCCcceEEEcCC
Confidence 5666778754 2234556777777765 5555443221 1111111 22367888899
Q ss_pred cchhh---hhccCCccccccc---cCch-hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCC
Q 045029 354 APQIA---VLAHPAIGGFVSH---CGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENP 426 (485)
Q Consensus 354 ~pq~~---vL~h~~~~~~itH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~ 426 (485)
+|+.+ ++..+++.++.++ -|+| +++||+++|+|+|+....+....... .. +.|...+
T Consensus 252 v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~------------ 315 (357)
T cd03795 252 LDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVP------------ 315 (357)
T ss_pred CCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeC------------
Confidence 99754 7777888444443 3444 79999999999999766655544321 24 6777664
Q ss_pred cccCHHHHHHHHHHHhcCChHH
Q 045029 427 TVVNAEVIERGIRCLMEHNSEM 448 (485)
Q Consensus 427 ~~~~~~~l~~av~~vl~~~~~~ 448 (485)
.-+.++++++|.++++ |++.
T Consensus 316 -~~d~~~~~~~i~~l~~-~~~~ 335 (357)
T cd03795 316 -PGDPAALAEAIRRLLE-DPEL 335 (357)
T ss_pred -CCCHHHHHHHHHHHHH-CHHH
Confidence 3478999999999998 6643
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.71 E-value=3e-05 Score=77.98 Aligned_cols=121 Identities=7% Similarity=-0.117 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCCh
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPP 82 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~ 82 (485)
..||++++....|+-.-+..+|+.|+++||+ |++++..... ...+.. ...++.++.+.... ......
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~--V~ii~~~~~~-----~~~~~~----~~~~v~~~~~~~~~--~~~~~~ 69 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWK--VDLVGYLETP-----PHDEIL----SNPNITIHPLPPPP--QRLNKL 69 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCce--EEEEEecCCC-----CCHHHh----cCCCEEEEECCCCc--cccccc
Confidence 4588888888888878888999999999999 5577644211 111111 14578777775432 001111
Q ss_pred HhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECC-Cc---hh-HHHHHHHcCCCeEEEe
Q 045029 83 KRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDM-FC---TC-MIEVADEFKVPSYLFF 141 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~-~~---~~-~~~~A~~lgiP~v~~~ 141 (485)
...+..+ ......+..++..+.+. .++|+|++.. .. .+ +..++...++|.|..+
T Consensus 70 ~~~~~~~-~~~~~~~~~~~~~l~~~----~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 70 PFLLFAP-LKVLWQFFSLLWLLYKL----RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHhc----CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 1111111 11111222333334333 4899998743 22 11 3344666899977643
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.71 E-value=3.2e-05 Score=75.30 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCcceEeecc-hhhhhccCCccccccccC----chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAP-QIAVLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~p-q~~vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
.++.+.++.. -..++..+++ +|.-.. -+++.||+++|+|+|+-+..+ +...+.+. +.|..++
T Consensus 246 ~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~------ 312 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVP------ 312 (359)
T ss_pred ceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEEC------
Confidence 4566666643 3347888887 664332 568999999999999976543 33343433 6777664
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
.-+.+++.++|.+++. +++.+++
T Consensus 313 -------~~~~~~~~~~i~~l~~-~~~~~~~ 335 (359)
T cd03808 313 -------PGDAEALADAIERLIE-DPELRAR 335 (359)
T ss_pred -------CCCHHHHHHHHHHHHh-CHHHHHH
Confidence 2368999999999988 6544433
No 57
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.69 E-value=7.3e-05 Score=74.96 Aligned_cols=85 Identities=9% Similarity=0.093 Sum_probs=59.4
Q ss_pred CCcceEeecchh---hhhccCCcccccc---ccCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccc
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVS---HCGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYR 418 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~it---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~ 418 (485)
+++.+.+++|+. .+|..+++ ||. +-|+ .+++||+++|+|+|+....+ ....+.+. +.|..++
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~-~~g~~~~---- 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADG-ETGLLVD---- 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccC-CceEECC----
Confidence 568888999865 46888888 553 2343 48999999999999976543 33333343 5777664
Q ss_pred ccccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 419 NDIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
.-+.++++++|.++++ +++.+++
T Consensus 352 ---------~~d~~~la~~i~~~l~-~~~~~~~ 374 (405)
T TIGR03449 352 ---------GHDPADWADALARLLD-DPRTRIR 374 (405)
T ss_pred ---------CCCHHHHHHHHHHHHh-CHHHHHH
Confidence 2378999999999998 6644433
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.68 E-value=9.4e-05 Score=72.72 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred CCcceEeecc-hh---hhhccCCcccccccc----CchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 346 NIGKVIGWAP-QI---AVLAHPAIGGFVSHC----GWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 346 ~~~~v~~~~p-q~---~vL~h~~~~~~itHg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
.++.+.+|++ +. .++..+++ ++.-. .-++++||+++|+|+|+....+ ....+.+. +.|..++
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~-~~g~~~~--- 313 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHG-VTGYLAK--- 313 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCC-CceEEeC---
Confidence 4567779998 43 36877887 76643 3478999999999999875432 22232332 4676654
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
..+.+++++++.++++ +++
T Consensus 314 ----------~~~~~~~~~~l~~l~~-~~~ 332 (365)
T cd03825 314 ----------PGDPEDLAEGIEWLLA-DPD 332 (365)
T ss_pred ----------CCCHHHHHHHHHHHHh-CHH
Confidence 3478899999999998 664
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.67 E-value=9.6e-05 Score=74.32 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCcceEeecchhh---hhccCCccccccccCc------hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeec
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSHCGW------NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itHgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
+++.+.+|+|+.. ++..+++.++.+..+. +.+.|++++|+|+|+....+... . .+.+ +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~--~-~~i~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTEL--G-QLVE--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchH--H-HHHh--CCcEEeCC-
Confidence 4688889998754 6888888555555442 23689999999999987544211 1 1233 66776652
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
-+.++++++|.++++ |++.+
T Consensus 358 ------------~d~~~la~~i~~l~~-~~~~~ 377 (412)
T PRK10307 358 ------------ESVEALVAAIAALAR-QALLR 377 (412)
T ss_pred ------------CCHHHHHHHHHHHHh-CHHHH
Confidence 378999999999998 55433
No 60
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.66 E-value=8.2e-05 Score=73.50 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=57.0
Q ss_pred CCcceEeecch-hhhhccCCcccccc-c-cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQ-IAVLAHPAIGGFVS-H-CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq-~~vL~h~~~~~~it-H-gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++.++ ..++..+++-++-+ . |.-.++.||+++|+|+|+.... ..+..+.+. ..|..++
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~-------- 319 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVD-------- 319 (371)
T ss_pred ceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcC--------
Confidence 45777777764 34787887733222 2 3345999999999999996543 344444443 5676554
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChHHHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNSEMRK 450 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~~~r~ 450 (485)
.-+.+++++++.++++ +++.++
T Consensus 320 -----~~~~~~l~~~i~~l~~-~~~~~~ 341 (371)
T cd04962 320 -----VGDVEAMAEYALSLLE-DDELWQ 341 (371)
T ss_pred -----CCCHHHHHHHHHHHHh-CHHHHH
Confidence 2368899999999998 664433
No 61
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=6.9e-06 Score=74.05 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=97.6
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecc-hhh
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAP-QIA 358 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~p-q~~ 358 (485)
-|+|++|- +.+....-+++..|.+..+.+-.++|...+. ...++.... -.+++.+..... -..
T Consensus 160 ~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~------------l~~l~k~~~--~~~~i~~~~~~~dma~ 223 (318)
T COG3980 160 DILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSSNPT------------LKNLRKRAE--KYPNINLYIDTNDMAE 223 (318)
T ss_pred eEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCCCcc------------hhHHHHHHh--hCCCeeeEecchhHHH
Confidence 68899986 2233456678888988887766777743100 111222221 124555554444 344
Q ss_pred hhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHH
Q 045029 359 VLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGI 438 (485)
Q Consensus 359 vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av 438 (485)
++..++. .|+-+|. |+.|++.-|+|.+++|+...|..-|...+.. |+-..+.. .++.......+
T Consensus 224 LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~------------~l~~~~~~~~~ 287 (318)
T COG3980 224 LMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY------------HLKDLAKDYEI 287 (318)
T ss_pred HHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC------------CCchHHHHHHH
Confidence 8888888 9998885 7999999999999999999999999887764 87766643 35667777777
Q ss_pred HHHhcCChHHHHHHHHHH
Q 045029 439 RCLMEHNSEMRKRVKEMS 456 (485)
Q Consensus 439 ~~vl~~~~~~r~~a~~~~ 456 (485)
.++.+ |...|++.-.-+
T Consensus 288 ~~i~~-d~~~rk~l~~~~ 304 (318)
T COG3980 288 LQIQK-DYARRKNLSFGS 304 (318)
T ss_pred HHhhh-CHHHhhhhhhcc
Confidence 78887 666666544333
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.62 E-value=9.1e-05 Score=71.70 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=60.3
Q ss_pred CCcceEeecc-hhhhhccCCcccccccc----CchhhHHHHhhCCcEeeccccccchhhHHHHHHhhc-eeEEeeecccc
Q 045029 346 NIGKVIGWAP-QIAVLAHPAIGGFVSHC----GWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG-LAVEIKMDYRN 419 (485)
Q Consensus 346 ~~~~v~~~~p-q~~vL~h~~~~~~itHg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g-~G~~l~~~~~~ 419 (485)
+++.+.++.. -..++..+++ +|.-. .-++++||+++|+|+|+.+..+.+. .+... | .|..++
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~----- 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVP----- 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeC-----
Confidence 3455556533 3447878777 55443 2468999999999999876554443 33444 4 777665
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMS 456 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~ 456 (485)
.-+.++++++|.++++ |++.+++..+-+
T Consensus 303 --------~~~~~~~~~~i~~ll~-~~~~~~~~~~~~ 330 (348)
T cd03820 303 --------NGDVEALAEALLRLME-DEELRKRMGANA 330 (348)
T ss_pred --------CCCHHHHHHHHHHHHc-CHHHHHHHHHHH
Confidence 3467999999999998 776655544443
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.62 E-value=4.4e-05 Score=73.20 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred hhhHhhhhccCCCCcEEEEeecCcc----cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhh
Q 045029 265 KADIMAWLDDQPESSVVFLCFGSWG----SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGF 340 (485)
Q Consensus 265 ~~~l~~~l~~~~~~~~vyvs~GS~~----~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 340 (485)
+++..+-|... +.+.|++=+-+.. ......+.++++.|+..+..+|...+... ...+-+.|
T Consensus 167 d~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~--------------~~~~~~~~ 231 (335)
T PF04007_consen 167 DPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED--------------QRELFEKY 231 (335)
T ss_pred ChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc--------------hhhHHhcc
Confidence 33444444422 3457777776643 22334567799999888877555444321 00011111
Q ss_pred HhhhcCCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 341 MDRTANIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 341 ~~~~~~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
++.+. .-+.-.++|.++++ ||+-|| ....||..-|+|.|-+ +.++--..=+.+.+. |.- ..
T Consensus 232 ------~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll--~~----- 293 (335)
T PF04007_consen 232 ------GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLL--YH----- 293 (335)
T ss_pred ------CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCe--Ee-----
Confidence 13333 44555589999999 998777 6788999999999975 222322222345565 652 22
Q ss_pred cccccCCcccCHHHHHHHHHHHhc
Q 045029 420 DIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
.-+.+++.+.|++.+.
T Consensus 294 --------~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 294 --------STDPDEIVEYVRKNLG 309 (335)
T ss_pred --------cCCHHHHHHHHHHhhh
Confidence 2466777776655443
No 64
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.55 E-value=0.00016 Score=73.25 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=56.7
Q ss_pred cCCcceEeecchhhh---hccC--Ccccccccc---C-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeee
Q 045029 345 ANIGKVIGWAPQIAV---LAHP--AIGGFVSHC---G-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKM 415 (485)
Q Consensus 345 ~~~~~v~~~~pq~~v---L~h~--~~~~~itHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~ 415 (485)
.+++.+.+++++.++ +..+ +..+||... | -.+++||+++|+|+|+-...+ +... +..-..|+.++
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~ei-v~~~~~G~lv~- 389 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDI-IANCRNGLLVD- 389 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHH-hcCCCcEEEeC-
Confidence 356667788877664 5444 123377543 3 358999999999999986543 3323 33314677665
Q ss_pred cccccccccCCcccCHHHHHHHHHHHhcCChHH
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLMEHNSEM 448 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~ 448 (485)
.-+.++++++|.++++ |++.
T Consensus 390 ------------~~d~~~la~~i~~ll~-~~~~ 409 (439)
T TIGR02472 390 ------------VLDLEAIASALEDALS-DSSQ 409 (439)
T ss_pred ------------CCCHHHHHHHHHHHHh-CHHH
Confidence 3478999999999998 6643
No 65
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.55 E-value=8.5e-05 Score=73.41 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=71.9
Q ss_pred CCcceEeecchh---hhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.+.+++. .++.++++ +|+-.|.. +.||+++|+|+|..+-.++++. +.+. |.+..+.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~-------- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG-------- 318 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--------
Confidence 467777666543 56677777 89877644 7999999999999976666553 2344 7766542
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
-+.++|.+++.++++ +++.+++... ... ...+|+++.+.++.+.+
T Consensus 319 ------~d~~~i~~ai~~ll~-~~~~~~~~~~---~~~-~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 319 ------TDKENITKAAKRLLT-DPDEYKKMSN---ASN-PYGDGEASERIVEELLN 363 (365)
T ss_pred ------CCHHHHHHHHHHHHh-ChHHHHHhhh---cCC-CCcCchHHHHHHHHHHh
Confidence 368899999999998 6766655433 222 23456777766665543
No 66
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.54 E-value=1.2e-05 Score=79.32 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=82.7
Q ss_pred CcEEEEeecCcccC-CHHHHHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh---cCCcceEe
Q 045029 278 SSVVFLCFGSWGSF-GEDQVKEIACALEQSGH-RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT---ANIGKVIG 352 (485)
Q Consensus 278 ~~~vyvs~GS~~~~-~~~~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~v~~ 352 (485)
++.|++++|..... ..+.+..++++++.... ++++...... . . ...+-+ ...+. .+++.+.+
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~-------~----~~~l~~-~~~~~~~~~~~v~~~~ 264 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-R-------T----RPRIRE-AGLEFLGHHPNVLLIS 264 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-C-------h----HHHHHH-HHHhhccCCCCEEEEC
Confidence 45788888876543 35567788888876533 2444433221 0 0 011111 11111 24666666
Q ss_pred ecchh---hhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCccc
Q 045029 353 WAPQI---AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVV 429 (485)
Q Consensus 353 ~~pq~---~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~ 429 (485)
..++. .++..+++ ||+..| |.+.||+++|+|+|+++.. |. +..+++. |+++.+. -
T Consensus 265 ~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~--------------~ 322 (363)
T cd03786 265 PLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG--------------T 322 (363)
T ss_pred CcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC--------------C
Confidence 55544 45666777 999999 7778999999999998743 22 3344554 7765442 2
Q ss_pred CHHHHHHHHHHHhcCChHHH
Q 045029 430 NAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 430 ~~~~l~~av~~vl~~~~~~r 449 (485)
+.++|.++|+++++ ++..+
T Consensus 323 ~~~~i~~~i~~ll~-~~~~~ 341 (363)
T cd03786 323 DPEAILAAIEKLLS-DEFAY 341 (363)
T ss_pred CHHHHHHHHHHHhc-Cchhh
Confidence 57899999999998 55443
No 67
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.54 E-value=0.00026 Score=69.38 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCcceEeecc-hhhhhccCCccccccc--cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccc
Q 045029 346 NIGKVIGWAP-QIAVLAHPAIGGFVSH--CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDI 421 (485)
Q Consensus 346 ~~~~v~~~~p-q~~vL~h~~~~~~itH--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~ 421 (485)
+++.+.+|.+ ...+|..+++.++-++ -|+ ++++||+++|+|+|+.-..+ +...+.+. +.|..++
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~-~~g~~~~------- 313 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPG-ETGLLVP------- 313 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCC-CceEEeC-------
Confidence 5677778754 3447888888444442 233 59999999999999875433 33333332 4777765
Q ss_pred cccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 422 MIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 422 ~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
.-+.++++++|..++..+++.+
T Consensus 314 ------~~~~~~l~~~i~~~~~~~~~~~ 335 (355)
T cd03819 314 ------PGDAEALAQALDQILSLLPEGR 335 (355)
T ss_pred ------CCCHHHHHHHHHHHHhhCHHHH
Confidence 3478999999976665355433
No 68
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.53 E-value=0.00059 Score=74.11 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=57.4
Q ss_pred CCcceEeecchhh---hhccCC--ccccccc---cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeec
Q 045029 346 NIGKVIGWAPQIA---VLAHPA--IGGFVSH---CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~--~~~~itH---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
+++.+.+++++.+ ++..++ .++||.- =|+ .+++||+++|+|+|+-...+ .. .+++.-.-|+.++
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~-EII~~g~nGlLVd-- 620 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PV-DIHRVLDNGLLVD-- 620 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cH-HHhccCCcEEEEC--
Confidence 5667778888765 344442 2337764 343 48999999999999987544 11 2233224677665
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
.-+.+.|+++|.++++ +++.+++
T Consensus 621 -----------P~D~eaLA~AL~~LL~-Dpelr~~ 643 (1050)
T TIGR02468 621 -----------PHDQQAIADALLKLVA-DKQLWAE 643 (1050)
T ss_pred -----------CCCHHHHHHHHHHHhh-CHHHHHH
Confidence 3478899999999998 6654443
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.53 E-value=0.00044 Score=67.71 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCcceEeecchhh---hhccCCccccccc-cC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSH-CG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itH-gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+|+++.. ++..+++-++-++ .| -+++.||+++|+|+|+-+..+ .... ... +.|...+
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~-~~~-~~~~~~~------ 329 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQEL-IEY-GCGWVVD------ 329 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHH-hhc-CceEEeC------
Confidence 5677889999655 5777777333333 22 457999999999999976432 3323 444 6776553
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
.+.+++.++|.++++ +++.+++
T Consensus 330 --------~~~~~~~~~i~~l~~-~~~~~~~ 351 (375)
T cd03821 330 --------DDVDALAAALRRALE-LPQRLKA 351 (375)
T ss_pred --------CChHHHHHHHHHHHh-CHHHHHH
Confidence 244999999999998 6543333
No 70
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.53 E-value=0.00072 Score=66.01 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=58.5
Q ss_pred CCcceEeecchh---hhhccCCcccccc--ccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVS--HCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~it--HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+++++. .++..+++.++.+ -|.-+++.||+++|+|+|+-+..+ ....+.+. +.|...+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~-~~g~~~~------ 327 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDG-ENGLLVP------ 327 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCC-cceeEEC------
Confidence 567888999875 4677777733333 245668999999999999876543 33343443 6676664
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
.-+.+++.+++.++++ +++
T Consensus 328 -------~~~~~~l~~~i~~~~~-~~~ 346 (377)
T cd03798 328 -------PGDPEALAEAILRLLA-DPW 346 (377)
T ss_pred -------CCCHHHHHHHHHHHhc-CcH
Confidence 3478999999999998 554
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.52 E-value=0.00024 Score=70.83 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=56.3
Q ss_pred cCCcceEeecchh---hhhccCCccccccc---cC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 345 ANIGKVIGWAPQI---AVLAHPAIGGFVSH---CG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 345 ~~~~~v~~~~pq~---~vL~h~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
.+++.+.+++|+. .+|..+++ ++.. -| -.+++||+++|+|+|+.-..+ ....+.+. +.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC---
Confidence 3678888999876 46777777 5532 22 257899999999999975433 33333443 5676543
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
.+.++++++|.++++ +++
T Consensus 349 -----------~~~~~~a~~i~~l~~-~~~ 366 (392)
T cd03805 349 -----------PTPEEFAEAMLKLAN-DPD 366 (392)
T ss_pred -----------CCHHHHHHHHHHHHh-ChH
Confidence 268899999999998 554
No 72
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=0.001 Score=64.33 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=56.3
Q ss_pred ccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCCh
Q 045029 367 GFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNS 446 (485)
Q Consensus 367 ~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~ 446 (485)
=|+-+||+| .+|++++|+|+|.=|+..-|...++++.+. |.|+.++ +++.+.++++..++ |+
T Consensus 326 Slv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~---------------~~~~l~~~v~~l~~-~~ 387 (419)
T COG1519 326 SLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE---------------DADLLAKAVELLLA-DE 387 (419)
T ss_pred cccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC---------------CHHHHHHHHHHhcC-CH
Confidence 366799998 899999999999999999999999999997 9998875 37788888888877 55
Q ss_pred HHHHH
Q 045029 447 EMRKR 451 (485)
Q Consensus 447 ~~r~~ 451 (485)
..|++
T Consensus 388 ~~r~~ 392 (419)
T COG1519 388 DKREA 392 (419)
T ss_pred HHHHH
Confidence 44433
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.43 E-value=0.0014 Score=64.28 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCcceE-eecchh---hhhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 346 NIGKVI-GWAPQI---AVLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 346 ~~~~v~-~~~pq~---~vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
+++.+. +|+|+. .++..+++-++-++ |.-++++||+++|+|+|+-+..+ ...+... +.|..++
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~--- 317 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP--- 317 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc---
Confidence 456666 458864 47777777333232 33458899999999999987665 1223344 6776664
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
.-+.+++++++.++++ +++.+
T Consensus 318 ----------~~d~~~~~~~l~~l~~-~~~~~ 338 (366)
T cd03822 318 ----------PGDPAALAEAIRRLLA-DPELA 338 (366)
T ss_pred ----------CCCHHHHHHHHHHHHc-ChHHH
Confidence 2368999999999998 55433
No 74
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=0.00038 Score=70.94 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=102.6
Q ss_pred CCCCeEEec-cccCCCCCCCCCCCCCCCChhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHH--hc--CCceE
Q 045029 237 KTPPLYPMG-PILNIKGENYDLGEGGADKKADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALE--QS--GHRFL 311 (485)
Q Consensus 237 ~~p~v~~vG-pl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~--~~--~~~~l 311 (485)
..-++.+|| |+...-.. ....++..+-+.-.+++++|-+--||....=...+-.++++.+ .. +.+|+
T Consensus 379 ~gv~v~yVGHPL~d~i~~--------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fv 450 (608)
T PRK01021 379 SPLRTVYLGHPLVETISS--------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLL 450 (608)
T ss_pred cCCCeEEECCcHHhhccc--------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEE
Confidence 445699999 44432110 1223333333333334568999999954221122333555555 32 45665
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcC-C---cceEeecchhhhhccCCccccccccCchhhHHHHhhCCcE
Q 045029 312 WSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTAN-I---GKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPI 387 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~---~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~ 387 (485)
....... ..+.+.+...+ + +.++.--...+++..+++ .+.-+|-. |+|+..+|+||
T Consensus 451 vp~a~~~-----------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~Pm 510 (608)
T PRK01021 451 VSSANPK-----------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETALNQTPT 510 (608)
T ss_pred EecCchh-----------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCE
Confidence 5432210 01112221111 1 122210012468888888 88888864 78999999999
Q ss_pred eecc-ccccchhhHHHHHHh--hce-------eEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 045029 388 ATWP-MYAEQQFNAFELVVE--LGL-------AVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSE 457 (485)
Q Consensus 388 v~~P-~~~DQ~~na~r~~~~--~g~-------G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~ 457 (485)
|++= ...=-+..|+++.+. -=+ |..+-.+.-++.+ ..|++.|++++ ++|. |++.|++.++--+
T Consensus 511 VV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~-----~~tpe~La~~l-~lL~-d~~~r~~~~~~l~ 583 (608)
T PRK01021 511 IVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKK-----DFQPEEVAAAL-DILK-TSQSKEKQKDACR 583 (608)
T ss_pred EEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcc-----cCCHHHHHHHH-HHhc-CHHHHHHHHHHHH
Confidence 9863 222223445665541 011 1111111111111 58999999997 8888 6666666666666
Q ss_pred HHHHhhhcCCCh
Q 045029 458 KARKALSDGGSS 469 (485)
Q Consensus 458 ~~~~~~~~gg~~ 469 (485)
++++.+++|-++
T Consensus 584 ~lr~~Lg~~~~~ 595 (608)
T PRK01021 584 DLYQAMNESAST 595 (608)
T ss_pred HHHHHhcCCCCC
Confidence 666666555443
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.37 E-value=0.0015 Score=63.75 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=57.7
Q ss_pred cCCcceEeecchhh---hhccCCccccccc--------cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEe
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSH--------CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEI 413 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itH--------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l 413 (485)
.+++.+.+++|+.+ ++.++++.++-+. |.-++++||+++|+|+|+.+..+ .. .+.+....|..+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~-~~----~~i~~~~~g~~~ 309 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG-IP----ELVEDGETGLLV 309 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC-cc----hhhhCCCceEEe
Confidence 35678889997654 6677888333333 23468999999999999976532 22 234432477766
Q ss_pred eecccccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 414 KMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
+ .-+.++++++|.++++ ++.
T Consensus 310 ~-------------~~~~~~l~~~i~~~~~-~~~ 329 (355)
T cd03799 310 P-------------PGDPEALADAIERLLD-DPE 329 (355)
T ss_pred C-------------CCCHHHHHHHHHHHHh-CHH
Confidence 4 2378999999999998 553
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.36 E-value=0.0027 Score=61.84 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCcceEeecc-hhhhhccCCccccccccC----chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAP-QIAVLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~p-q~~vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+... -..++..+++ +|.... -+++.||+++|+|+|+.... .+...+.+ .|..++
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~---~g~~~~------ 315 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD---TGFLVP------ 315 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc---CCEEeC------
Confidence 3444444443 3457888888 665544 37999999999999986443 33333333 454444
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCCh
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNS 446 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~ 446 (485)
.-+.+++++++.++++ ++
T Consensus 316 -------~~~~~~l~~~i~~l~~-~~ 333 (365)
T cd03807 316 -------PGDPEALAEAIEALLA-DP 333 (365)
T ss_pred -------CCCHHHHHHHHHHHHh-Ch
Confidence 2368999999999998 54
No 77
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.34 E-value=2.4e-06 Score=69.19 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=76.1
Q ss_pred EEEEeecCcccCCH-H--HHHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceE---e
Q 045029 280 VVFLCFGSWGSFGE-D--QVKEIACALEQSGH-RFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVI---G 352 (485)
Q Consensus 280 ~vyvs~GS~~~~~~-~--~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~---~ 352 (485)
.+||+-||....+- . .-.+..+.|.+.|. +.+..+|.+. ...++......++.+..+ +
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~---------------~~~~d~~~~~~k~~gl~id~y~ 69 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ---------------PFFGDPIDLIRKNGGLTIDGYD 69 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc---------------cCCCCHHHhhcccCCeEEEEEe
Confidence 89999999652111 1 12246677777776 7888888762 112222222222223333 6
Q ss_pred ecch-hhhhccCCccccccccCchhhHHHHhhCCcEeeccc----cccchhhHHHHHHhhceeE
Q 045029 353 WAPQ-IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM----YAEQQFNAFELVVELGLAV 411 (485)
Q Consensus 353 ~~pq-~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~r~~~~~g~G~ 411 (485)
|-|- ....+.+++ +|+|+|+||++|.|..|+|.|+++- --.|-.-|..+++. |.=.
T Consensus 70 f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~ 130 (170)
T KOG3349|consen 70 FSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLY 130 (170)
T ss_pred cCccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEE
Confidence 6774 445556777 9999999999999999999999993 35899999998886 6543
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.34 E-value=0.0004 Score=68.45 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=60.5
Q ss_pred cCCcceEeecchhh---hhccCCccccccc----------cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeE
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSH----------CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itH----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~ 411 (485)
.+++.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+-+..+ +...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-CeeE
Confidence 45677889998755 4778888 5432 23568999999999999877643 44444454 7787
Q ss_pred EeeecccccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 412 EIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
.++ .-+.++++++|.++++ +++.+
T Consensus 317 ~~~-------------~~d~~~l~~~i~~l~~-~~~~~ 340 (367)
T cd05844 317 LVP-------------EGDVAALAAALGRLLA-DPDLR 340 (367)
T ss_pred EEC-------------CCCHHHHHHHHHHHHc-CHHHH
Confidence 665 2467999999999998 66433
No 79
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.32 E-value=0.001 Score=65.14 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCcceEeecch-hhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQ-IAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq-~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++..+ ..++..+++-++-++ |.-++++||+++|+|+|+.. ...+...+.+ .|.. +.
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~-~g~~--~~-------- 309 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGD-SGLI--VP-------- 309 (360)
T ss_pred CcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecC-CceE--eC--------
Confidence 46777777643 457888888333333 22468999999999999753 3444433333 2443 33
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKA 459 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~ 459 (485)
.-+.+++++++.++++.++.+++...+.++.+
T Consensus 310 -----~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 341 (360)
T cd04951 310 -----ISDPEALANKIDEILKMSGEERDIIGARRERI 341 (360)
T ss_pred -----CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24788999999999954555655544433333
No 80
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.30 E-value=0.001 Score=66.55 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=52.4
Q ss_pred CCcceEeecchhh---hhccCCcccccc-ccCch-hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVS-HCGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~it-HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+|+|+.+ +++.+++.++-+ +-|+| +++||+++|+|+|+-+..+- ... ... |.+...
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~-i~~-~~~~~~------- 316 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEV-LPP-DMILLA------- 316 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhh-eeC-Cceeec-------
Confidence 5677889998654 677777732222 22444 99999999999999876532 222 333 434222
Q ss_pred ccccCCcccCHHHHHHHHHHHhc
Q 045029 421 IMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
..+.+++++++.++++
T Consensus 317 -------~~~~~~l~~~l~~~l~ 332 (398)
T cd03796 317 -------EPDVESIVRKLEEAIS 332 (398)
T ss_pred -------CCCHHHHHHHHHHHHh
Confidence 2367899999999988
No 81
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.29 E-value=0.00067 Score=66.83 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=76.3
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHh--hhcCCcceEeecc
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQS--GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMD--RTANIGKVIGWAP 355 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~v~~~~p 355 (485)
.+++..|.........+..+++++... +.++++ +|.+. + .+.+ ....+ ...+++.+.+|++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~---------~----~~~l-~~~~~~~~l~~~v~f~G~~~ 245 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGS---------D----FEKC-KAYSRELGIEQRIIWHGWQS 245 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCc---------c----HHHH-HHHHHHcCCCCeEEEecccC
Confidence 555667776432334466777777664 345444 34321 0 0001 11111 1235788888875
Q ss_pred h--hh---hhccCCccccccc--cCchhhHHHHhhCCcEeecc-ccccchhhHHHHHHhhceeEEeeecccccccccCCc
Q 045029 356 Q--IA---VLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWP-MYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPT 427 (485)
Q Consensus 356 q--~~---vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P-~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~ 427 (485)
+ .. .+..+++-++-++ |--+++.||+++|+|+|+.- ..+ ...++..-..|..++
T Consensus 246 ~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g-----~~eiv~~~~~G~lv~------------- 307 (359)
T PRK09922 246 QPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG-----PRDIIKPGLNGELYT------------- 307 (359)
T ss_pred CcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC-----hHHHccCCCceEEEC-------------
Confidence 3 22 3444566222233 33579999999999999875 333 112344325677664
Q ss_pred ccCHHHHHHHHHHHhcCChH
Q 045029 428 VVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 428 ~~~~~~l~~av~~vl~~~~~ 447 (485)
.-+.++++++|.++++ +++
T Consensus 308 ~~d~~~la~~i~~l~~-~~~ 326 (359)
T PRK09922 308 PGNIDEFVGKLNKVIS-GEV 326 (359)
T ss_pred CCCHHHHHHHHHHHHh-Ccc
Confidence 3478999999999998 554
No 82
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.28 E-value=0.00037 Score=67.68 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=76.5
Q ss_pred EEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEeecchhh
Q 045029 281 VFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIGWAPQIA 358 (485)
Q Consensus 281 vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~~~pq~~ 358 (485)
+.+..|... ..+....+++++++.+.++++.-.+.. ...+-....+. ..+++.+.+++++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~--------------~~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD--------------PDYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC--------------HHHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 334456653 233356677888888888776543321 00000011111 246788889998754
Q ss_pred ---hhccCCccccccc--cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHH
Q 045029 359 ---VLAHPAIGGFVSH--CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAE 432 (485)
Q Consensus 359 ---vL~h~~~~~~itH--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~ 432 (485)
+++.+++-++-+. -|+ .++.||+++|+|+|+....+ +. .+.+.-..|..++ . .+
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~-e~i~~~~~g~l~~-------------~--~~ 296 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VP-EVVEDGVTGFLVD-------------S--VE 296 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----ch-hheeCCCcEEEeC-------------C--HH
Confidence 5777887444342 344 47999999999999886643 22 2334313666542 2 88
Q ss_pred HHHHHHHHHhc
Q 045029 433 VIERGIRCLME 443 (485)
Q Consensus 433 ~l~~av~~vl~ 443 (485)
+++++++++++
T Consensus 297 ~l~~~l~~l~~ 307 (335)
T cd03802 297 ELAAAVARADR 307 (335)
T ss_pred HHHHHHHHHhc
Confidence 99999998876
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.25 E-value=0.00048 Score=66.68 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCcceEeecch-hhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQ-IAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq-~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++.+. ..++..+++-++-++ |.-+++.||+++|+|+|+-... .....+.+. +.|...+.
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~------- 313 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV------- 313 (353)
T ss_pred ccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-------
Confidence 45677777764 347888888333333 3346799999999999986544 444444444 77877653
Q ss_pred ccCCcccCHHHH---HHHHHHHhcCChHHHHHH
Q 045029 423 IENPTVVNAEVI---ERGIRCLMEHNSEMRKRV 452 (485)
Q Consensus 423 ~~~~~~~~~~~l---~~av~~vl~~~~~~r~~a 452 (485)
-+.+.+ .+++.+.+. +++.+++.
T Consensus 314 ------~~~~~~~~~~~~i~~~~~-~~~~~~~~ 339 (353)
T cd03811 314 ------GDEAALAAAALALLDLLL-DPELRERL 339 (353)
T ss_pred ------CCHHHHHHHHHHHHhccC-ChHHHHHH
Confidence 355666 566666666 45443333
No 84
>PLN02949 transferase, transferring glycosyl groups
Probab=98.20 E-value=0.005 Score=62.51 Aligned_cols=82 Identities=9% Similarity=-0.094 Sum_probs=51.9
Q ss_pred cCCcceEeecchhh---hhccCCcccccc---ccCch-hhHHHHhhCCcEeeccccccchhhHHHHHHh-hc-eeEEeee
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVS---HCGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVE-LG-LAVEIKM 415 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~-~g-~G~~l~~ 415 (485)
.+++.+.+++|+.+ +|..+++ +|+ +=|+| ++.||+++|+|+|+....+--... +.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC--
Confidence 46788889998665 5777777 552 23444 799999999999998655411010 0110 01 23221
Q ss_pred cccccccccCCcccCHHHHHHHHHHHhcCCh
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLMEHNS 446 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~ 446 (485)
-+.+++++++.+++++++
T Consensus 407 -------------~~~~~la~ai~~ll~~~~ 424 (463)
T PLN02949 407 -------------TTVEEYADAILEVLRMRE 424 (463)
T ss_pred -------------CCHHHHHHHHHHHHhCCH
Confidence 268899999999998434
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.16 E-value=0.0046 Score=60.67 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=49.8
Q ss_pred cCCcceEeecchhh---hhccCCccccccccCc-----hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeec
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSHCGW-----NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itHgG~-----~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
.+++.+.+++|+.. ++..+++ ++.+.=. ++++||+++|+|+|+....+... . .+. .|...+.
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e----~-~~~--~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNRE----V-LGD--KAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCccce----e-ecC--CeeEecC-
Confidence 36788889998865 4555666 5444322 47999999999999976543211 1 111 2222221
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
.+.++++|.++++ +++.+
T Consensus 317 --------------~~~l~~~i~~l~~-~~~~~ 334 (363)
T cd04955 317 --------------GDDLASLLEELEA-DPEEV 334 (363)
T ss_pred --------------chHHHHHHHHHHh-CHHHH
Confidence 1129999999998 65433
No 86
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.14 E-value=0.0021 Score=64.22 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCcceEeecchh-hhhccCCccccccc--cCch-hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccc
Q 045029 346 NIGKVIGWAPQI-AVLAHPAIGGFVSH--CGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDI 421 (485)
Q Consensus 346 ~~~~v~~~~pq~-~vL~h~~~~~~itH--gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~ 421 (485)
+++.+.+++++. .++.++++-++-++ .|.+ .++||+++|+|+|+.+...+... ... |.|+.+.
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~-----~~~-~~g~lv~------- 346 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGID-----ALP-GAELLVA------- 346 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccccccc-----ccC-CcceEeC-------
Confidence 567888999854 47888888332243 3543 69999999999999886433211 223 6676553
Q ss_pred cccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 422 MIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 422 ~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
-+.++++++|.++++ |++.+++
T Consensus 347 -------~~~~~la~ai~~ll~-~~~~~~~ 368 (397)
T TIGR03087 347 -------ADPADFAAAILALLA-NPAEREE 368 (397)
T ss_pred -------CCHHHHHHHHHHHHc-CHHHHHH
Confidence 268999999999998 6654333
No 87
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.14 E-value=0.00058 Score=66.51 Aligned_cols=107 Identities=25% Similarity=0.249 Sum_probs=71.1
Q ss_pred chhhhhccCCccccccccCchhhHHHHhhCCcEeecccc-ccchhhHHHHHHhhceeEE-------eeecccccccccCC
Q 045029 355 PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY-AEQQFNAFELVVELGLAVE-------IKMDYRNDIMIENP 426 (485)
Q Consensus 355 pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~-~DQ~~na~r~~~~~g~G~~-------l~~~~~~~~~~~~~ 426 (485)
.-.+++..+++ .+.=.|- .|+|+..+|+|||++=-. .=-+..|+++++.-=+|+. +-.+.- .+
T Consensus 253 ~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEli--Q~---- 323 (373)
T PF02684_consen 253 ESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELI--QE---- 323 (373)
T ss_pred chHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhh--cc----
Confidence 34457878887 7777775 478999999999987322 2334456666543112211 111111 11
Q ss_pred cccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHH
Q 045029 427 TVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSS 472 (485)
Q Consensus 427 ~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~ 472 (485)
..|++.|.+++.++++ |++.++..+...+.+++..+.|.++...
T Consensus 324 -~~~~~~i~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 324 -DATPENIAAELLELLE-NPEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred -cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 6899999999999999 6766888888888888887777776653
No 88
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.13 E-value=0.00033 Score=67.76 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=65.2
Q ss_pred hhhhccCCccccccccCchhhHHHHhhCCcEeecccc--ccchhhHHHHHHh--hceeEEe-e--------ecccccccc
Q 045029 357 IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY--AEQQFNAFELVVE--LGLAVEI-K--------MDYRNDIMI 423 (485)
Q Consensus 357 ~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~r~~~~--~g~G~~l-~--------~~~~~~~~~ 423 (485)
.+++..+++ .|+-.|..|+ |+..+|+|+|+ ++- .=|+.||+++++. .|..-.+ + .+.- .
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEll--Q-- 301 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELL--Q-- 301 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhh--c--
Confidence 458888888 9999999999 99999999999 543 4788999998831 2433222 1 0000 0
Q ss_pred cCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 045029 424 ENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLI 477 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~ 477 (485)
...|++.|.+++.+ . .+++.++..+.+++...+ |++.+. .+.|
T Consensus 302 ---~~~t~~~la~~i~~-~-----~~~~~~~~~~~l~~~l~~-~a~~~~-A~~i 344 (347)
T PRK14089 302 ---EFVTVENLLKAYKE-M-----DREKFFKKSKELREYLKH-GSAKNV-AKIL 344 (347)
T ss_pred ---ccCCHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhcC-CHHHHH-HHHH
Confidence 16889999999977 2 234444444444444433 444443 4444
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.10 E-value=0.006 Score=59.72 Aligned_cols=87 Identities=11% Similarity=-0.047 Sum_probs=56.8
Q ss_pred CCcceEeecch-hhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQ-IAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq-~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++..+ ..++..+++.++=+. |--++++||+++|+|+|+-...+- .. +... +.|....
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~-~i~~-~~~~~~~-------- 314 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EV-DLTD-LVKFLSL-------- 314 (358)
T ss_pred CcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hh-hhcc-CccEEeC--------
Confidence 55667776543 447888887333222 446789999999999998765542 22 2333 5554443
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChHHHHHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNSEMRKRV 452 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~~~r~~a 452 (485)
.-+.++++++|.++++ +++.+++.
T Consensus 315 -----~~~~~~~a~~i~~l~~-~~~~~~~~ 338 (358)
T cd03812 315 -----DESPEIWAEEILKLKS-EDRRERSS 338 (358)
T ss_pred -----CCCHHHHHHHHHHHHh-Ccchhhhh
Confidence 2357999999999999 66554443
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.04 E-value=0.018 Score=57.16 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=52.3
Q ss_pred eecchhh---hhccCCccccccc---cC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccccc
Q 045029 352 GWAPQIA---VLAHPAIGGFVSH---CG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIE 424 (485)
Q Consensus 352 ~~~pq~~---vL~h~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~ 424 (485)
+++++.+ ++.++++ ||.= -| -.+++||+++|+|+|+.... .....+... +.|..++....
T Consensus 267 ~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~------ 333 (388)
T TIGR02149 267 KMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNS------ 333 (388)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCC------
Confidence 6677543 6778887 6542 22 34679999999999997643 344344443 67877753300
Q ss_pred CCcccCHHHHHHHHHHHhcCChHHH
Q 045029 425 NPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 425 ~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
+..-..+++.++|.++++ |++.+
T Consensus 334 -~~~~~~~~l~~~i~~l~~-~~~~~ 356 (388)
T TIGR02149 334 -DADGFQAELAKAINILLA-DPELA 356 (388)
T ss_pred -cccchHHHHHHHHHHHHh-CHHHH
Confidence 001123899999999998 65433
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.016 Score=61.53 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCcceEeecchh-hhhccCCcccccc---ccC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVIGWAPQI-AVLAHPAIGGFVS---HCG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~~~~pq~-~vL~h~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+++.+.+|.++. .+|..+++ ||. +-| -++++||+++|+|+|+....+ ... ++..-..|+.++..
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~E-iV~dg~~GlLv~~~---- 642 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGE-AVQEGVTGLTLPAD---- 642 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHH-HccCCCCEEEeCCC----
Confidence 567777887643 37777777 553 445 458999999999999986543 332 34331468777543
Q ss_pred ccccCCcccCHHHHHHHHHHHhcC---ChHHHHHHHHHH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEH---NSEMRKRVKEMS 456 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~---~~~~r~~a~~~~ 456 (485)
..+.+++++++.+++.. ++.+++++++..
T Consensus 643 -------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 -------TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -------CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 34556677776665542 456766655443
No 92
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.97 E-value=0.023 Score=56.13 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=54.8
Q ss_pred CCcceEeecc-hhhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAP-QIAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~p-q~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++.. -..++..+++-++-++ |--++++||+++|+|+|+-...+ +...+.+. ..|..++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~-------- 321 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVP-------- 321 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeC--------
Confidence 3445545443 3457888888332243 33568999999999999976543 33333332 5677665
Q ss_pred ccCCcccCHHHHHHHHHHHhcCChHH
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNSEM 448 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~~~ 448 (485)
.-+.++++++|.++++ +++.
T Consensus 322 -----~~d~~~la~~i~~l~~-~~~~ 341 (374)
T TIGR03088 322 -----PGDAVALARALQPYVS-DPAA 341 (374)
T ss_pred -----CCCHHHHHHHHHHHHh-CHHH
Confidence 2378899999999998 6543
No 93
>PLN00142 sucrose synthase
Probab=97.96 E-value=0.017 Score=61.73 Aligned_cols=115 Identities=7% Similarity=0.014 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCeE--EEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCC--hHhHHHHHHHhhhhhHH
Q 045029 23 VARLLVDRDDRLS--VTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTP--PKRFFGHFVESKKPHVK 98 (485)
Q Consensus 23 La~~L~~rGH~v~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 98 (485)
|+++|+++||+|. |+++|=-.+. .....+.+.++......+.....+|.+........ ....+ +..+....+
T Consensus 320 l~~~l~~~G~~v~~~v~i~TR~i~~-~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l---~p~L~~f~~ 395 (815)
T PLN00142 320 MLLRIKQQGLDIKPQILIVTRLIPD-AKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDV---WPYLETFAE 395 (815)
T ss_pred HHHHHHhcCCCccceeEEEEeccCC-ccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHH---HHHHHHHHH
Confidence 5578889999863 5566522111 11122333332223345777777776542111100 11111 222222222
Q ss_pred HHHHhhhhcCCCCCCccEEEECCCch--hHHHHHHHcCCCeEEEech
Q 045029 99 EVVANLTDESPDSPRLAGFVLDMFCT--CMIEVADEFKVPSYLFFTS 143 (485)
Q Consensus 99 ~~l~~l~~~~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~ 143 (485)
..++.+.+. ...+||+|.+.+-.. .+..+++++|||.+....+
T Consensus 396 ~~~~~~~~~--~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 396 DAASEILAE--LQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHHHh--cCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 333333222 124799999887543 3568899999998875443
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.91 E-value=0.0081 Score=58.72 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=58.4
Q ss_pred cCCcceEeecchhh---hhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
.+++.+.+++|+.. +|..+++-++-+. +.-+++.||+++|+|+|+-...+ .... .. ..|..+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~-~~--~~~~~~~----- 319 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEV-AG--DAALYFD----- 319 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccce-ec--CceeeeC-----
Confidence 46677889998764 6777777332221 23457999999999999865532 1111 22 2344343
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMS 456 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~ 456 (485)
.-+.+++.++|.++++ |++.+.+..+-+
T Consensus 320 --------~~~~~~~~~~i~~l~~-~~~~~~~~~~~~ 347 (365)
T cd03809 320 --------PLDPEALAAAIERLLE-DPALREELRERG 347 (365)
T ss_pred --------CCCHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 2378999999999998 676555544433
No 95
>PLN02275 transferase, transferring glycosyl groups
Probab=97.84 E-value=0.028 Score=55.64 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=49.5
Q ss_pred CcceE-eecchhhh---hccCCcccccc----c--cC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeee
Q 045029 347 IGKVI-GWAPQIAV---LAHPAIGGFVS----H--CG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKM 415 (485)
Q Consensus 347 ~~~v~-~~~pq~~v---L~h~~~~~~it----H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~ 415 (485)
++.+. .|+|+.++ |+.+++ ||. . -| -++++||+++|+|+|+....+ +. .+++.-+.|..++
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~-eiv~~g~~G~lv~- 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IG-ELVKDGKNGLLFS- 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCCC----hH-HHccCCCCeEEEC-
Confidence 45554 47888665 888888 663 1 12 347999999999999975432 44 3444426787653
Q ss_pred cccccccccCCcccCHHHHHHHHHHHh
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl 442 (485)
+.++++++|.+++
T Consensus 359 --------------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------------SSSELADQLLELL 371 (371)
T ss_pred --------------CHHHHHHHHHHhC
Confidence 3688888888764
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.83 E-value=0.038 Score=55.62 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=55.0
Q ss_pred cCCcceEeecchhh---hhccCCcccccc-----ccCchhhHHHHhhCCcEeeccccccchhhHHHHHH---hhceeEEe
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVS-----HCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVV---ELGLAVEI 413 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~it-----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~---~~g~G~~l 413 (485)
.+++.+.+++|+.+ +|..+++ +|+ |-| .++.||+++|+|+|+.-..+.-. -+++ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~~----~iv~~~~~g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPLL----DIVVPWDGGPTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCch----heeeccCCCCceEEe
Confidence 36788889988765 6777777 443 333 37899999999999875443211 1222 11466543
Q ss_pred eecccccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 414 KMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
. +.+++++++.++++++++.+
T Consensus 377 --------------~-d~~~la~ai~~ll~~~~~~~ 397 (419)
T cd03806 377 --------------S-TAEEYAEAIEKILSLSEEER 397 (419)
T ss_pred --------------C-CHHHHHHHHHHHHhCCHHHH
Confidence 2 68899999999998433333
No 97
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.80 E-value=0.078 Score=56.70 Aligned_cols=79 Identities=15% Similarity=0.037 Sum_probs=48.2
Q ss_pred CCcceEeec-ch---hhhhcc-CC-cccccc---ccCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeee
Q 045029 346 NIGKVIGWA-PQ---IAVLAH-PA-IGGFVS---HCGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKM 415 (485)
Q Consensus 346 ~~~~v~~~~-pq---~~vL~h-~~-~~~~it---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~ 415 (485)
+++.+.++. +. ..++.+ ++ .++||. .=|+ .+++||+++|+|+|+--..+ ...-+.+. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCC-CcEEEeCC
Confidence 556666654 32 234432 21 123663 2233 48999999999999976553 33333343 56887763
Q ss_pred cccccccccCCcccCHHHHHHHHHHHh
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl 442 (485)
-+.++++++|.+++
T Consensus 694 -------------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -------------YHGEEAAEKIVDFF 707 (784)
T ss_pred -------------CCHHHHHHHHHHHH
Confidence 46788888888776
No 98
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.63 E-value=0.00094 Score=66.48 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=65.4
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEeecc
Q 045029 278 SSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIGWAP 355 (485)
Q Consensus 278 ~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~~~p 355 (485)
..++|.||.+....+++.+.-.++-|++.+.-.+|..+.... + +..+-+.+... ..+++.+.++.|
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~-----------~~~l~~~~~~~Gv~~~Ri~f~~~~~ 351 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G-----------EARLRRRFAAHGVDPDRIIFSPVAP 351 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H-----------HHHHHHHHHHTTS-GGGEEEEE---
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H-----------HHHHHHHHHHcCCChhhEEEcCCCC
Confidence 459999999999999999999999999999988998865420 0 01111111111 135667778777
Q ss_pred hhhhh---ccCCccccc---cccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeE
Q 045029 356 QIAVL---AHPAIGGFV---SHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411 (485)
Q Consensus 356 q~~vL---~h~~~~~~i---tHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~ 411 (485)
+.+-| ...++ ++ ..+|..|++|||+.|||+|.+|--.=.-..++-+-..+|+.-
T Consensus 352 ~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E 411 (468)
T PF13844_consen 352 REEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE 411 (468)
T ss_dssp HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG
T ss_pred HHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch
Confidence 65543 33444 44 457889999999999999999943322233333333357664
No 99
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.62 E-value=0.023 Score=58.07 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=45.4
Q ss_pred hhhccCCcccccc---ccCch-hhHHHHhhCCcEeeccccc--cchhhHHHHHHhhceeEEeeecccccccccCCcccCH
Q 045029 358 AVLAHPAIGGFVS---HCGWN-STLESIWFGVPIATWPMYA--EQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNA 431 (485)
Q Consensus 358 ~vL~h~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~ 431 (485)
.+++.+++ ||. +-|+| +.+||+++|+|.|+.-..+ |...+...-.+. +.|+.++ .-+.
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~-------------~~d~ 415 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD-------------DFNA 415 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC-------------CCCH
Confidence 46778888 663 23444 7899999999999875543 322111110122 6677765 3478
Q ss_pred HHHHHHHHHHhc
Q 045029 432 EVIERGIRCLME 443 (485)
Q Consensus 432 ~~l~~av~~vl~ 443 (485)
++++++|.++++
T Consensus 416 ~~la~~i~~~l~ 427 (466)
T PRK00654 416 EDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHH
Confidence 899999999875
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.57 E-value=0.00033 Score=68.71 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=85.3
Q ss_pred EEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchh---h
Q 045029 282 FLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQI---A 358 (485)
Q Consensus 282 yvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~---~ 358 (485)
++..|+.. ....+..++++++..+.+++++-++.. .+.+.+...+++.+.+++|+. .
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~------------------~~~l~~~~~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE------------------LDRLRAKAGPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh------------------HHHHHhhcCCCEEEecCCCHHHHHH
Confidence 44457654 223466788888887777666543320 122222345788999999985 4
Q ss_pred hhccCCccccccccCch-hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHH
Q 045029 359 VLAHPAIGGFVSHCGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERG 437 (485)
Q Consensus 359 vL~h~~~~~~itHgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~a 437 (485)
++..+++-++-+.-|+| +++||+++|+|+|+....+ ....+.+. +.|..++. -+.++++++
T Consensus 258 ~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-------------~~~~~la~~ 319 (351)
T cd03804 258 LYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-------------QTVESLAAA 319 (351)
T ss_pred HHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-------------CCHHHHHHH
Confidence 68788884444454544 5789999999999986544 22233343 67877652 378889999
Q ss_pred HHHHhcCCh-HHHHHHH
Q 045029 438 IRCLMEHNS-EMRKRVK 453 (485)
Q Consensus 438 v~~vl~~~~-~~r~~a~ 453 (485)
|.++++ ++ ..+++++
T Consensus 320 i~~l~~-~~~~~~~~~~ 335 (351)
T cd03804 320 VERFEK-NEDFDPQAIR 335 (351)
T ss_pred HHHHHh-CcccCHHHHH
Confidence 999998 55 3444433
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.54 E-value=0.084 Score=52.18 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=52.9
Q ss_pred CCcceEeec--chh---hhhccCCcccccccc---C-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeec
Q 045029 346 NIGKVIGWA--PQI---AVLAHPAIGGFVSHC---G-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~--pq~---~vL~h~~~~~~itHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
+++.+.++. ++. .+++.+++ |+.-. | -.+++||+++|+|+|+....+ ....+... ..|+.++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC--
Confidence 456677776 333 36777777 77533 2 348999999999999976443 22233333 5565432
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
+.+.++.+|.++++ +++.++.
T Consensus 323 -------------~~~~~a~~i~~ll~-~~~~~~~ 343 (372)
T cd03792 323 -------------TVEEAAVRILYLLR-DPELRRK 343 (372)
T ss_pred -------------CcHHHHHHHHHHHc-CHHHHHH
Confidence 35677789999998 6655443
No 102
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.52 E-value=0.0025 Score=63.88 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=68.5
Q ss_pred CCcceEeecchhh---hhccCCccccccccC----chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccc
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYR 418 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~ 418 (485)
+++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-...+ .... ...-+.|..+..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~-i~~~~~G~l~~~--- 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEI-VDNGGNGLLLSK--- 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHH-hcCCCcEEEeCC---
Confidence 4577789999765 444444444765443 458999999999999865433 4434 444147877652
Q ss_pred ccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHH
Q 045029 419 NDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRL 476 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~ 476 (485)
.-+.++++++|.++++ |++.+++ +++..++.+.+-=+.....++|
T Consensus 361 ---------~~~~~~la~~I~~ll~-~~~~~~~---m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 361 ---------DPTPNELVSSLSKFID-NEEEYQT---MREKAREKWEENFNASKNYREF 405 (407)
T ss_pred ---------CCCHHHHHHHHHHHHh-CHHHHHH---HHHHHHHHHHHHcCHHHhHHHh
Confidence 2478999999999998 6644333 4444444433333434444444
No 103
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.084 Score=50.79 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=64.9
Q ss_pred hhccCCccccccccCchhhHHHHhhCCcEeecccc-ccchhhHHHHHHhhceeE-------EeeecccccccccCCcccC
Q 045029 359 VLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMY-AEQQFNAFELVVELGLAV-------EIKMDYRNDIMIENPTVVN 430 (485)
Q Consensus 359 vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~-~DQ~~na~r~~~~~g~G~-------~l~~~~~~~~~~~~~~~~~ 430 (485)
++..+++ .+.-+|-. ++|+.-+|+|||+.=-. .=-++.|++++.-+=+++ .+-.+.-. + ..+
T Consensus 261 a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq--~-----~~~ 330 (381)
T COG0763 261 AFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQ--E-----DCT 330 (381)
T ss_pred HHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHh--h-----hcC
Confidence 5666777 88888865 68999999999986211 111234445444322221 11111110 1 578
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 045029 431 AEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDF 480 (485)
Q Consensus 431 ~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (485)
++.|.+++.+++. |+.-++.-++--+.+++.+..+++++.+.+.+++.+
T Consensus 331 pe~la~~l~~ll~-~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 331 PENLARALEELLL-NGDRREALKEKFRELHQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 9999999999998 553334444444444555555666666666655543
No 104
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.49 E-value=0.054 Score=53.39 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=77.5
Q ss_pred CcEEEEeecCcc---cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh--cCCcceEe
Q 045029 278 SSVVFLCFGSWG---SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT--ANIGKVIG 352 (485)
Q Consensus 278 ~~~vyvs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~v~~ 352 (485)
++.++|++=... ....+.+.++++++...+.++++...... .+ ...+-+...+.. .+++.+.+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~-----------~~~i~~~i~~~~~~~~~v~l~~ 268 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AG-----------SRIINEAIEEYVNEHPNFRLFK 268 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CC-----------chHHHHHHHHHhcCCCCEEEEC
Confidence 358888875432 23456789999999887766666543221 00 000111111111 24677775
Q ss_pred ec---chhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCccc
Q 045029 353 WA---PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVV 429 (485)
Q Consensus 353 ~~---pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~ 429 (485)
-+ ....++.++++ +||-.+.+- .||.+.|+|+|.+- +-+. ..+. |..+.+- ..
T Consensus 269 ~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~e----~~~~-g~nvl~v-------------g~ 324 (365)
T TIGR03568 269 SLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQK----GRLR-ADSVIDV-------------DP 324 (365)
T ss_pred CCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCch----hhhh-cCeEEEe-------------CC
Confidence 44 45568888888 998885554 99999999999874 2111 1232 4333211 24
Q ss_pred CHHHHHHHHHHHhc
Q 045029 430 NAEVIERGIRCLME 443 (485)
Q Consensus 430 ~~~~l~~av~~vl~ 443 (485)
++++|.++++++++
T Consensus 325 ~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 325 DKEEIVKAIEKLLD 338 (365)
T ss_pred CHHHHHHHHHHHhC
Confidence 78999999999554
No 105
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.39 E-value=0.0095 Score=59.16 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=58.1
Q ss_pred cCCcceEeecchhh---hhccCCccccccc----cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeec
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVSH----CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~itH----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
..++.+.+++|+.+ +++.+++ ||.. -|. .+++||+++|+|+|+....+ +...+.+. ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEeC-
Confidence 35677889998655 5878888 6542 343 57789999999999987643 33233333 56764431
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEM 448 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~ 448 (485)
..+.++++++|.++++ |++.
T Consensus 328 -----------~~d~~~la~~I~~ll~-d~~~ 347 (380)
T PRK15484 328 -----------PMTSDSIISDINRTLA-DPEL 347 (380)
T ss_pred -----------CCCHHHHHHHHHHHHc-CHHH
Confidence 3478999999999998 6654
No 106
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.30 E-value=0.23 Score=50.10 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=49.6
Q ss_pred eEeecchhhhhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccC
Q 045029 350 VIGWAPQIAVLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIEN 425 (485)
Q Consensus 350 v~~~~pq~~vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~ 425 (485)
+.++.+...++...++ ||.- +=-++++||+++|+|+|+.-..+ + ..+.+. +-|...
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~------------ 347 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY------------ 347 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec------------
Confidence 3366666678888877 8866 33568999999999999986543 2 122232 444332
Q ss_pred CcccCHHHHHHHHHHHhcCC
Q 045029 426 PTVVNAEVIERGIRCLMEHN 445 (485)
Q Consensus 426 ~~~~~~~~l~~av~~vl~~~ 445 (485)
-+.+++.+++.++|+++
T Consensus 348 ---~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 348 ---DDGKGFVRATLKALAEE 364 (462)
T ss_pred ---CCHHHHHHHHHHHHccC
Confidence 25778999999998743
No 107
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.29 E-value=0.0055 Score=53.12 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=60.9
Q ss_pred cCCcceEeecch---hhhhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 345 ANIGKVIGWAPQ---IAVLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 345 ~~~~~v~~~~pq---~~vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
..++.+.+++++ ..++..+++ +|+. +.-+++.||+++|+|+|+.- -..+...+.+. +.|..++
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~--- 141 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFD--- 141 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEES---
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeC---
Confidence 356788888872 347778888 7765 56679999999999999854 34444343343 6688775
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHH
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKE 454 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~ 454 (485)
..+.++++++|.++++ +++++++..+
T Consensus 142 ----------~~~~~~l~~~i~~~l~-~~~~~~~l~~ 167 (172)
T PF00534_consen 142 ----------PNDIEELADAIEKLLN-DPELRQKLGK 167 (172)
T ss_dssp ----------TTSHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHC-CHHHHHHHHH
Confidence 3489999999999999 6654444333
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0062 Score=48.84 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=65.2
Q ss_pred EEEeecCcccCCHHH-HH--HHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEee--cc
Q 045029 281 VFLCFGSWGSFGEDQ-VK--EIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGW--AP 355 (485)
Q Consensus 281 vyvs~GS~~~~~~~~-~~--~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~--~p 355 (485)
+||+-||... +-.. +. ++.+-.+.-..++|..+|... ..|-+ + ..+.+| .+
T Consensus 2 ifVTvGstf~-~f~rlv~k~e~~el~~~i~e~lIvQyGn~d----------------~kpva------g-l~v~~F~~~~ 57 (161)
T COG5017 2 IFVTVGSTFY-PFNRLVLKIEVLELTELIQEELIVQYGNGD----------------IKPVA------G-LRVYGFDKEE 57 (161)
T ss_pred eEEEecCccc-hHHHHHhhHHHHHHHHHhhhheeeeecCCC----------------ccccc------c-cEEEeechHH
Confidence 6888899631 1111 11 122222223458899998752 12311 1 245544 34
Q ss_pred hh-hhhccCCccccccccCchhhHHHHhhCCcEeeccccc--------cchhhHHHHHHhhceeEEe
Q 045029 356 QI-AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA--------EQQFNAFELVVELGLAVEI 413 (485)
Q Consensus 356 q~-~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~r~~~~~g~G~~l 413 (485)
-. .+-..+++ +|+|||.||++.++..++|.|++|-.. .|-..|..+++- +.=+..
T Consensus 58 kiQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~ 121 (161)
T COG5017 58 KIQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVAC 121 (161)
T ss_pred HHHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEE
Confidence 33 34545555 999999999999999999999999543 577778777764 655443
No 109
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.06 E-value=0.024 Score=56.82 Aligned_cols=83 Identities=11% Similarity=0.217 Sum_probs=58.1
Q ss_pred cCCcceEeecchhh---hhccCCcccccc--c-------cCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeE
Q 045029 345 ANIGKVIGWAPQIA---VLAHPAIGGFVS--H-------CGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411 (485)
Q Consensus 345 ~~~~~v~~~~pq~~---vL~h~~~~~~it--H-------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~ 411 (485)
.+++.+.+|+|+.+ ++..+++ ||. + -|. ++++||+++|+|+|+-...+ ....+.+. ..|+
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 35688889999865 6777888 553 3 244 56899999999999976543 22233332 5677
Q ss_pred EeeecccccccccCCcccCHHHHHHHHHHHhcCChH
Q 045029 412 EIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSE 447 (485)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 447 (485)
.++ .-+.++++++|.++++.|++
T Consensus 351 lv~-------------~~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 351 LVP-------------ENDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred EeC-------------CCCHHHHHHHHHHHHhCCHH
Confidence 665 23789999999999873443
No 110
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.06 E-value=0.0024 Score=52.96 Aligned_cols=78 Identities=23% Similarity=0.256 Sum_probs=48.9
Q ss_pred CCcceEeecch-hhhhccCCcccccccc--C-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccc
Q 045029 346 NIGKVIGWAPQ-IAVLAHPAIGGFVSHC--G-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDI 421 (485)
Q Consensus 346 ~~~~v~~~~pq-~~vL~h~~~~~~itHg--G-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~ 421 (485)
.++.+.+|+++ ..+++.+++.+..+.. | -+++.|++++|+|+|+.+....+ .+... +.|..+ .
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~-----~~~~~-~~~~~~-~------ 119 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNGAEG-----IVEED-GCGVLV-A------ 119 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHHCHC-----HS----SEEEE--T------
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcchhh-----heeec-CCeEEE-C------
Confidence 57888899863 3378899997776532 3 48999999999999998772111 22233 777766 2
Q ss_pred cccCCcccCHHHHHHHHHHHhc
Q 045029 422 MIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 422 ~~~~~~~~~~~~l~~av~~vl~ 443 (485)
-+.+++.++|+++++
T Consensus 120 -------~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 -------NDPEELAEAIERLLN 134 (135)
T ss_dssp -------T-HHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHhc
Confidence 389999999999986
No 111
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.86 E-value=0.0025 Score=62.15 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCCcEEEEeecCcccCC-H---HHHHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcce
Q 045029 276 PESSVVFLCFGSWGSFG-E---DQVKEIACALEQS-GHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKV 350 (485)
Q Consensus 276 ~~~~~vyvs~GS~~~~~-~---~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v 350 (485)
.+++.++|++=...+.. + .++.++++++.+. +.++||.+..... + ...+ .....+. +++.+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-~-----------~~~i-~~~l~~~-~~v~~ 243 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-G-----------SDII-IEKLKKY-DNVRL 243 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-H-----------HHHH-HHHHTT--TTEEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-H-----------HHHH-HHHhccc-CCEEE
Confidence 34579999985555444 3 3455667777665 7889998763310 0 0001 1111122 37777
Q ss_pred Eeec---chhhhhccCCccccccccCchhhH-HHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCC
Q 045029 351 IGWA---PQIAVLAHPAIGGFVSHCGWNSTL-ESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENP 426 (485)
Q Consensus 351 ~~~~---pq~~vL~h~~~~~~itHgG~~s~~-eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~ 426 (485)
++-+ ....+|.++++ +||..| +++ ||.+.|+|+|.+=..++.+.- ... |..+.+
T Consensus 244 ~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~nvlv------------- 301 (346)
T PF02350_consen 244 IEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG----RER-GSNVLV------------- 301 (346)
T ss_dssp E----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHH----HHT-TSEEEE-------------
T ss_pred ECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cceEEe-------------
Confidence 7555 45668889888 999999 677 999999999999333333321 232 555543
Q ss_pred cccCHHHHHHHHHHHhcCChHHHHH
Q 045029 427 TVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 427 ~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
..+.++|.++++++++ +....++
T Consensus 302 -~~~~~~I~~ai~~~l~-~~~~~~~ 324 (346)
T PF02350_consen 302 -GTDPEAIIQAIEKALS-DKDFYRK 324 (346)
T ss_dssp -TSSHHHHHHHHHHHHH--HHHHHH
T ss_pred -CCCHHHHHHHHHHHHh-ChHHHHh
Confidence 3689999999999998 4333333
No 112
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.59 E-value=0.0088 Score=58.23 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCcceEeecchhhhhcc--CCccccccc-------cCc------hhhHHHHhhCCcEeeccccccchhhHHHHHHhhcee
Q 045029 346 NIGKVIGWAPQIAVLAH--PAIGGFVSH-------CGW------NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLA 410 (485)
Q Consensus 346 ~~~~v~~~~pq~~vL~h--~~~~~~itH-------gG~------~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G 410 (485)
+|+.+.+|+|+.++..+ .+.+++... +.+ +-+.+.+++|+|+|+++ +...+..+.+. ++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cce
Confidence 57888999998876432 133333221 111 12677899999999964 45566565565 899
Q ss_pred EEeeecccccccccCCcccCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 045029 411 VEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSDGGSSFSSMGRLID 478 (485)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~ 478 (485)
+.++ +.+++.++++++..++ .+|++|++++++++++ |---..++++++.
T Consensus 282 ~~v~---------------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 282 FVVD---------------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred EEeC---------------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 8874 4568888888764311 2689999999999876 5554445555544
No 113
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.49 E-value=0.028 Score=55.56 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCcceEeecchh-hhhccCCcccccccc--CchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVIGWAPQI-AVLAHPAIGGFVSHC--GWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~~~~pq~-~vL~h~~~~~~itHg--G~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+++.+.++.++. .++..+++-++.++. .-.+++||+++|+|+|+.....- ....+... ..|..++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~~-~~G~lv~-------- 328 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIEDG-ENGYLVP-------- 328 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHcccC-CCceEeC--------
Confidence 456666666544 378888886666653 34589999999999999754321 22233343 6777665
Q ss_pred ccCCcccCHHHHHHHHHHHhcCCh
Q 045029 423 IENPTVVNAEVIERGIRCLMEHNS 446 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~~ 446 (485)
.-+.++++++|.++++ ++
T Consensus 329 -----~~d~~~la~~i~~ll~-~~ 346 (372)
T cd04949 329 -----KGDIEALAEAIIELLN-DP 346 (372)
T ss_pred -----CCcHHHHHHHHHHHHc-CH
Confidence 3478999999999998 55
No 114
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=1 Score=43.72 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=75.0
Q ss_pred CcceE---eecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccc
Q 045029 347 IGKVI---GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMI 423 (485)
Q Consensus 347 ~~~v~---~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~ 423 (485)
++.+. +|.+...++.++-+ ++|-.|.. .-||-..|+|++++=..-++|. + ++. |.-..+
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~~--iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE---~-v~a-gt~~lv---------- 324 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAFL--ILTDSGGI-QEEAPSLGKPVLVLRDTTERPE---G-VEA-GTNILV---------- 324 (383)
T ss_pred cEEEeCCcchHHHHHHHHhceE--EEecCCch-hhhHHhcCCcEEeeccCCCCcc---c-eec-CceEEe----------
Confidence 46655 67788889999887 99988843 6789999999999999999998 2 444 555444
Q ss_pred cCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 045029 424 ENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDD 479 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~ 479 (485)
..+.+.|.+++.++++ +++..+|.+....- -++|.+|.+-++.+...
T Consensus 325 ----g~~~~~i~~~~~~ll~-~~~~~~~m~~~~np----Ygdg~as~rIv~~l~~~ 371 (383)
T COG0381 325 ----GTDEENILDAATELLE-DEEFYERMSNAKNP----YGDGNASERIVEILLNY 371 (383)
T ss_pred ----CccHHHHHHHHHHHhh-ChHHHHHHhcccCC----CcCcchHHHHHHHHHHH
Confidence 2567999999999999 66666654333322 23455555555554443
No 115
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.09 E-value=0.29 Score=50.22 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=57.5
Q ss_pred CCcceEeecchhhhhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHh----h-ceeEEeeec
Q 045029 346 NIGKVIGWAPQIAVLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVE----L-GLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~pq~~vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~----~-g~G~~l~~~ 416 (485)
+++.+.+...-..+++.+++ +|.- |--++++||+++|+|+|+-.. ......+.+. + ..|..++
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~-- 425 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVP-- 425 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEEC--
Confidence 56777775556667877777 5533 334689999999999999543 3333232221 1 2676665
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhcCChHHHHHH
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRV 452 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a 452 (485)
.-+.++++++|.++++ |++.+++.
T Consensus 426 -----------~~d~~~la~ai~~ll~-~~~~~~~~ 449 (475)
T cd03813 426 -----------PADPEALARAILRLLK-DPELRRAM 449 (475)
T ss_pred -----------CCCHHHHHHHHHHHhc-CHHHHHHH
Confidence 3478999999999998 66544443
No 116
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.00 E-value=0.14 Score=52.68 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCcceEeecchhhhhccCCcccccc---ccCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccc
Q 045029 346 NIGKVIGWAPQIAVLAHPAIGGFVS---HCGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDI 421 (485)
Q Consensus 346 ~~~~v~~~~pq~~vL~h~~~~~~it---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~ 421 (485)
+++.+.++.+...++..+++ ||. .=|+ .+++||+++|+|+|+.-..+. +...+... .-|..++.....+
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI~~g-~nG~lv~~~~~~~- 448 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFIEDN-KNGYLIPIDEEED- 448 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHccCC-CCEEEEeCCcccc-
Confidence 45677788888889988888 554 3344 589999999999999754311 22233332 4576665210000
Q ss_pred cccCCcccC-HHHHHHHHHHHhcCCh---HHHHHHHHHH
Q 045029 422 MIENPTVVN-AEVIERGIRCLMEHNS---EMRKRVKEMS 456 (485)
Q Consensus 422 ~~~~~~~~~-~~~l~~av~~vl~~~~---~~r~~a~~~~ 456 (485)
..-+ .++++++|.++++ ++ .|.+++++.+
T Consensus 449 -----d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 449 -----DEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA 481 (500)
T ss_pred -----chhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 0112 7889999999996 43 3444444433
No 117
>PHA01633 putative glycosyl transferase group 1
Probab=95.91 E-value=0.21 Score=48.26 Aligned_cols=83 Identities=20% Similarity=0.163 Sum_probs=53.6
Q ss_pred CCcceE---eecchh---hhhccCCccccccc---cCc-hhhHHHHhhCCcEeeccc------cccc------hhhHHHH
Q 045029 346 NIGKVI---GWAPQI---AVLAHPAIGGFVSH---CGW-NSTLESIWFGVPIATWPM------YAEQ------QFNAFEL 403 (485)
Q Consensus 346 ~~~~v~---~~~pq~---~vL~h~~~~~~itH---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~na~r~ 403 (485)
+++.+. +++++. .+++.+++ ||.- -|+ ++++||+++|+|+|+--. .+|+ ..++...
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 557776 455554 46777777 7753 344 468899999999998633 2343 3334333
Q ss_pred HH-hhceeEEeeecccccccccCCcccCHHHHHHHHHHHhc
Q 045029 404 VV-ELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 404 ~~-~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
++ .-|.|..++ ..++++++++|.+++.
T Consensus 279 ~~~~~g~g~~~~-------------~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 279 YDKEHGQKWKIH-------------KFQIEDMANAIILAFE 306 (335)
T ss_pred cCcccCceeeec-------------CCCHHHHHHHHHHHHh
Confidence 32 115665554 4689999999999854
No 118
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.90 E-value=0.12 Score=52.33 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=79.7
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHh---h---hcCCcceE
Q 045029 278 SSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMD---R---TANIGKVI 351 (485)
Q Consensus 278 ~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~---~~~~~~v~ 351 (485)
.-+||.+|--....+++.++..++-|.+.+.-++|.++.... | + .+|.. . .++++.+.
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-g------------e---~rf~ty~~~~Gl~p~riifs 821 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-G------------E---QRFRTYAEQLGLEPDRIIFS 821 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-c------------h---HHHHHHHHHhCCCccceeec
Confidence 449999998888899999999999999999999999987631 0 0 12211 0 12455554
Q ss_pred eecch-----hhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEe
Q 045029 352 GWAPQ-----IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEI 413 (485)
Q Consensus 352 ~~~pq-----~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l 413 (485)
+-++- .-.|..-.+.-+.+ -|..|.++.||+|||||.+|.-.---..|.-+...+|+|-.+
T Consensus 822 ~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli 887 (966)
T KOG4626|consen 822 PVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI 887 (966)
T ss_pred cccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH
Confidence 44432 22343333333554 467899999999999999998654444444444446888644
No 119
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.87 E-value=0.25 Score=48.83 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=51.5
Q ss_pred CCcceEeecchhh---hhccCCccccc------cccCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeee
Q 045029 346 NIGKVIGWAPQIA---VLAHPAIGGFV------SHCGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKM 415 (485)
Q Consensus 346 ~~~~v~~~~pq~~---vL~h~~~~~~i------tHgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~ 415 (485)
+|+.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ + .. .+..+ |..+.
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~----~---~~-~~~~~-~~~~~- 323 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL----P---EV-RRYED-EVVLI- 323 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc----H---HH-HhhcC-cEEEe-
Confidence 6788899998666 57778884442 22332 358999999999998763 1 12 22213 33332
Q ss_pred cccccccccCCcccCHHHHHHHHHHHhcCC
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLMEHN 445 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 445 (485)
.-+.+++.++|++++.++
T Consensus 324 ------------~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 ------------ADDPEEFVAAIEKALLED 341 (373)
T ss_pred ------------CCCHHHHHHHHHHHHhcC
Confidence 237899999999987633
No 120
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.13 Score=51.78 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=79.3
Q ss_pred CCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhh--hcCCcceEee
Q 045029 276 PESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDR--TANIGKVIGW 353 (485)
Q Consensus 276 ~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~v~~~ 353 (485)
+++.+||+||+-....+++.+..-++-|+..+--++|..+++.... ....+-+-+.+. ...+.++.+-
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----------~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----------INARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----------HHHHHHHHHHHcCCChhheeecCC
Confidence 3456999999999999999999999999999999999987752100 000011111111 1234555566
Q ss_pred cchhh---hhccCCcccccc---ccCchhhHHHHhhCCcEeeccccccchh--hHHHHHHhhceeEEe
Q 045029 354 APQIA---VLAHPAIGGFVS---HCGWNSTLESIWFGVPIATWPMYAEQQF--NAFELVVELGLAVEI 413 (485)
Q Consensus 354 ~pq~~---vL~h~~~~~~it---HgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~r~~~~~g~G~~l 413 (485)
.|... =+.-+++ |+- =||..|+.|+|+.|||+|.++ ++||. |+.-++...|+-..+
T Consensus 497 ~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 497 APNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred CCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 65443 3333444 653 589999999999999999985 67764 344444444544333
No 121
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.73 E-value=2.5 Score=42.28 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=38.7
Q ss_pred hhccCCccccccc----cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHH
Q 045029 359 VLAHPAIGGFVSH----CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVI 434 (485)
Q Consensus 359 vL~h~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l 434 (485)
+++.+++ ||.- |--++++||+++|+|+|+....+ -+ .+++. +.|..++. -+.++|
T Consensus 303 ~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~~----Eiv~~-~~G~lv~~-------------~d~~~L 361 (405)
T PRK10125 303 ALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-AR----EVLQK-SGGKTVSE-------------EEVLQL 361 (405)
T ss_pred HHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-hH----HhEeC-CcEEEECC-------------CCHHHH
Confidence 4555666 6542 33457999999999999998775 22 23444 56877753 356777
Q ss_pred HHHH
Q 045029 435 ERGI 438 (485)
Q Consensus 435 ~~av 438 (485)
++++
T Consensus 362 a~~~ 365 (405)
T PRK10125 362 AQLS 365 (405)
T ss_pred Hhcc
Confidence 7654
No 122
>PLN02316 synthase/transferase
Probab=95.67 E-value=4.7 Score=44.89 Aligned_cols=101 Identities=5% Similarity=0.004 Sum_probs=57.6
Q ss_pred CCcceEeecchh---hhhccCCcccccccc---C-chhhHHHHhhCCcEeeccccc--cchhhHH----HHHHh--hcee
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVSHC---G-WNSTLESIWFGVPIATWPMYA--EQQFNAF----ELVVE--LGLA 410 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~itHg---G-~~s~~eal~~GvP~v~~P~~~--DQ~~na~----r~~~~--~g~G 410 (485)
+++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+-...+ |...... +-... -+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 455555444433 47777777 77421 2 247999999999988876543 3322210 00000 1457
Q ss_pred EEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Q 045029 411 VEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALS 464 (485)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~ 464 (485)
..++ ..+++.|..+|.+++. + |......+++..++.+.
T Consensus 978 flf~-------------~~d~~aLa~AL~raL~-~--~~~~~~~~~~~~r~~m~ 1015 (1036)
T PLN02316 978 FSFD-------------GADAAGVDYALNRAIS-A--WYDGRDWFNSLCKRVME 1015 (1036)
T ss_pred EEeC-------------CCCHHHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHH
Confidence 6665 4578899999999987 3 22333334444444443
No 123
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.14 E-value=0.024 Score=43.70 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=44.3
Q ss_pred hhhHhhhhccCCCCcEEEEeecCcccC---CH--HHHHHHHHHHHhcCCceEEEEcCC
Q 045029 265 KADIMAWLDDQPESSVVFLCFGSWGSF---GE--DQVKEIACALEQSGHRFLWSLRRP 317 (485)
Q Consensus 265 ~~~l~~~l~~~~~~~~vyvs~GS~~~~---~~--~~~~~~~~al~~~~~~~l~~~~~~ 317 (485)
...+..||...+.++.|+||+||.... .. ..+..++++++.++..+|..+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 456788999888899999999998643 22 468889999999999999999865
No 124
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.04 E-value=0.53 Score=47.23 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=68.8
Q ss_pred hhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEE-eeecccccccccCCcccCHHHHHH
Q 045029 358 AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVE-IKMDYRNDIMIENPTVVNAEVIER 436 (485)
Q Consensus 358 ~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~-l~~~~~~~~~~~~~~~~~~~~l~~ 436 (485)
.+++++++ +|.. =.-++.-|+..|||.+++++ |+.... .+ +.+|.... ++.+ .++.++|.+
T Consensus 323 ~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K~~~-~~-~~lg~~~~~~~~~-----------~l~~~~Li~ 384 (426)
T PRK10017 323 KILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--EHKSAG-IM-QQLGLPEMAIDIR-----------HLLDGSLQA 384 (426)
T ss_pred HHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--hHHHHH-HH-HHcCCccEEechh-----------hCCHHHHHH
Confidence 67877777 7743 34467779999999999998 443333 32 33577644 4433 688899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 437 GIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 437 av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
.+++++++.+++++..++.-+.+++. +.+...++++.+..
T Consensus 385 ~v~~~~~~r~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 385 MVADTLGQLPALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 99999994456777766666666653 34566677776643
No 125
>PRK14098 glycogen synthase; Provisional
Probab=94.51 E-value=0.5 Score=48.58 Aligned_cols=80 Identities=8% Similarity=-0.047 Sum_probs=52.6
Q ss_pred cCCcceEeecchh---hhhccCCcccccccc---Cc-hhhHHHHhhCCcEeeccccc--cchhhHHHHHHhhceeEEeee
Q 045029 345 ANIGKVIGWAPQI---AVLAHPAIGGFVSHC---GW-NSTLESIWFGVPIATWPMYA--EQQFNAFELVVELGLAVEIKM 415 (485)
Q Consensus 345 ~~~~~v~~~~pq~---~vL~h~~~~~~itHg---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~r~~~~~g~G~~l~~ 415 (485)
++++.+.+.++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |...+. ..+. +.|..++
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~--~~~~-~~G~l~~- 434 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEV--SEDK-GSGFIFH- 434 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecC--CCCC-CceeEeC-
Confidence 4677778888764 47777787 66432 22 36789999999888876543 322110 0123 6677665
Q ss_pred cccccccccCCcccCHHHHHHHHHHHh
Q 045029 416 DYRNDIMIENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~av~~vl 442 (485)
.-+.+++.++|.+++
T Consensus 435 ------------~~d~~~la~ai~~~l 449 (489)
T PRK14098 435 ------------DYTPEALVAKLGEAL 449 (489)
T ss_pred ------------CCCHHHHHHHHHHHH
Confidence 347899999998865
No 126
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.46 E-value=0.46 Score=48.71 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=50.8
Q ss_pred CCcceEeecchh---hhhccCCccccccc---cCch-hhHHHHhhCCcEeeccccc--cchhhHHHHHHhhceeEEeeec
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVSH---CGWN-STLESIWFGVPIATWPMYA--EQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~itH---gG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
+++.+....++. .+++.+++ |+.- -|.| +.+||+++|+|+|+....+ |...+..--... +.|+.++
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~-- 420 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE-- 420 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC--
Confidence 455555444543 36777777 6532 2444 7889999999999876543 322211000111 6677665
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhc
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
.-+.++++++|.+++.
T Consensus 421 -----------~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 421 -----------EYDPGALLAALSRALR 436 (473)
T ss_pred -----------CCCHHHHHHHHHHHHH
Confidence 3478899999999876
No 127
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.29 E-value=0.42 Score=48.98 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCcceEeecchh---hhhccCCccccccc---cCc-hhhHHHHhhCCcEeeccccc--cchhhHHHHHHhhceeEEeeec
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVSH---CGW-NSTLESIWFGVPIATWPMYA--EQQFNAFELVVELGLAVEIKMD 416 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~itH---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~r~~~~~g~G~~l~~~ 416 (485)
+++.+..-.++. .+++.+++ ++.- -|+ .+.+||+++|+|+|+....+ |...+...-.+. |.|..++
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~-- 425 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFE-- 425 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeC--
Confidence 556554333333 36777777 5532 122 37899999999999876543 222221110122 5787775
Q ss_pred ccccccccCCcccCHHHHHHHHHHHhc
Q 045029 417 YRNDIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
.-+.+++.++++++++
T Consensus 426 -----------~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 426 -----------GYNADALLAALRRALA 441 (476)
T ss_pred -----------CCCHHHHHHHHHHHHH
Confidence 3478999999999875
No 128
>PHA01630 putative group 1 glycosyl transferase
Probab=93.66 E-value=2.7 Score=40.74 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=29.0
Q ss_pred eecchhh---hhccCCcccccccc-C-chhhHHHHhhCCcEeeccccc
Q 045029 352 GWAPQIA---VLAHPAIGGFVSHC-G-WNSTLESIWFGVPIATWPMYA 394 (485)
Q Consensus 352 ~~~pq~~---vL~h~~~~~~itHg-G-~~s~~eal~~GvP~v~~P~~~ 394 (485)
.++|+.+ +++.+++-++-++. | -.+++||+++|+|+|+.-..+
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg 243 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGA 243 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCC
Confidence 3466554 57777773332332 2 458999999999999986543
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.34 E-value=7.2 Score=36.70 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=68.2
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHhHHH
Q 045029 8 FIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKRFFG 87 (485)
Q Consensus 8 ~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~ 87 (485)
.+=.+-.-|+.-+-.+-++|.++||++-+|+---. ...+.+. .-|+.+..+..... .+....+.
T Consensus 4 wiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--------~v~~LLd----~ygf~~~~Igk~g~----~tl~~Kl~ 67 (346)
T COG1817 4 WIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDFG--------VVTELLD----LYGFPYKSIGKHGG----VTLKEKLL 67 (346)
T ss_pred EEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeecC--------cHHHHHH----HhCCCeEeecccCC----ccHHHHHH
Confidence 34455667999999999999999999665543211 2222222 34677776654431 02221222
Q ss_pred HHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhH
Q 045029 88 HFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGA 145 (485)
Q Consensus 88 ~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (485)
...... -.|.++..+ .+||+.+. -+.+.+..+|--+|+|.+++.-...
T Consensus 68 ~~~eR~-----~~L~ki~~~----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 68 ESAERV-----YKLSKIIAE----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHHH-----HHHHHHHhh----cCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 222211 123344433 59999998 6678888999999999999865443
No 130
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.25 E-value=0.96 Score=34.34 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=47.4
Q ss_pred ccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhc-eeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHH
Q 045029 371 HCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELG-LAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMR 449 (485)
Q Consensus 371 HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g-~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r 449 (485)
+|-..-+.|++++|+|+|+-.. .... .+-.. | -++.. . +.+++.++|+.+++ |++.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~-~~~~~-~~~~~~~--------------~-~~~el~~~i~~ll~-~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLR-EIFED-GEHIITY--------------N-DPEELAEKIEYLLE-NPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHH-HHcCC-CCeEEEE--------------C-CHHHHHHHHHHHHC-CHHHH
Confidence 4445579999999999998765 2222 11222 3 22222 2 78999999999999 66433
Q ss_pred HHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 045029 450 KRVKEMSEKARKALSDGGSSFSSMGRLI 477 (485)
Q Consensus 450 ~~a~~~~~~~~~~~~~gg~~~~~~~~~~ 477 (485)
++ +++..++.+...=+..+-+++++
T Consensus 67 ~~---ia~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RR---IAKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 33 33333333333344444444443
No 131
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.76 E-value=8.7 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||+++-..+-|++.-+..+.+.|+++..+..|++++.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~ 38 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP 38 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEECh
Confidence 58899999999999999999999999877779999876
No 132
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.58 E-value=15 Score=38.20 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=42.5
Q ss_pred CCcceEeecchh-hhhccCCcccccc---ccC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEee
Q 045029 346 NIGKVIGWAPQI-AVLAHPAIGGFVS---HCG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIK 414 (485)
Q Consensus 346 ~~~~v~~~~pq~-~vL~h~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~ 414 (485)
+++.+.+|..+. .+|..+++ ||. .-| -++++||+++|+|+|+.... .+...+.+. ..|..++
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp 521 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILD 521 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEEC
Confidence 667777876432 36878888 774 334 55899999999999987653 344444444 6777765
No 133
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=92.22 E-value=0.35 Score=40.60 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHhHHHHHHHhhhhhHH
Q 045029 19 STVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKRFFGHFVESKKPHVK 98 (485)
Q Consensus 19 P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (485)
-+..|+++|.++||+ |+++++... ....+ ....++.+..++...... ...... +. ..+.
T Consensus 6 ~~~~l~~~L~~~G~~--V~v~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~-~~----~~~~ 64 (160)
T PF13579_consen 6 YVRELARALAARGHE--VTVVTPQPD--------PEDDE--EEEDGVRVHRLPLPRRPW----PLRLLR-FL----RRLR 64 (160)
T ss_dssp HHHHHHHHHHHTT-E--EEEEEE-----------GGG-S--EEETTEEEEEE--S-SSS----GGGHCC-HH----HHHH
T ss_pred HHHHHHHHHHHCCCE--EEEEecCCC--------Ccccc--cccCCceEEeccCCccch----hhhhHH-HH----HHHH
Confidence 467899999999999 667765411 11110 113467777666433211 111111 01 1222
Q ss_pred HHHHhhhhcCCCCCCccEEEECCCc-hhHHHHHH-HcCCCeEEEe
Q 045029 99 EVVANLTDESPDSPRLAGFVLDMFC-TCMIEVAD-EFKVPSYLFF 141 (485)
Q Consensus 99 ~~l~~l~~~~~~~~~~D~vI~D~~~-~~~~~~A~-~lgiP~v~~~ 141 (485)
..+ .. + ..++|+|.+.... .....++. ..++|++...
T Consensus 65 ~~l-~~-~----~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 65 RLL-AA-R----RERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHC-HH-C----T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHH-hh-h----ccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 222 11 2 2599999977642 22334455 7899987754
No 134
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=91.99 E-value=2 Score=35.35 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=57.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHh
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKR 84 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~ 84 (485)
||++++.....| ...+++.|.++||+ |++++.... .... ....++.+..++.... ....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~--V~ii~~~~~-------~~~~----~~~~~i~~~~~~~~~k-----~~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYD--VHIITPRND-------YEKY----EIIEGIKVIRLPSPRK-----SPLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCE--EEEEEcCCC-------chhh----hHhCCeEEEEecCCCC-----ccHH
Confidence 467777766666 45789999999999 667776421 1111 1145777777743210 1111
Q ss_pred HHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCch-h--HHHHHHHcC-CCeEEE
Q 045029 85 FFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCT-C--MIEVADEFK-VPSYLF 140 (485)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~-~--~~~~A~~lg-iP~v~~ 140 (485)
++. . . .+..+++. .+||+|.+....+ + +..++...+ +|.+..
T Consensus 60 ----~~~-~----~-~l~k~ik~----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 60 ----YIK-Y----F-RLRKIIKK----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ----HHH-H----H-HHHHHhcc----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 111 1 1 22333333 4899998776543 2 234567788 887753
No 135
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.24 E-value=4 Score=35.25 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=57.2
Q ss_pred EcCCCccCHHHHHHHHHHH-HhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHhHHH
Q 045029 9 IPSPGAGHLVSTVEVARLL-VDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKRFFG 87 (485)
Q Consensus 9 ~~~~~~GH~~P~l~La~~L-~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~ 87 (485)
+-.++.||..=|+.|.+.+ .++.... ..+++..+.... .-.++.+. .......+..++..... + .....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~-~~ivt~~d~~S~---~k~~~~~~-~~~~~~~~~~~~r~r~v-~----q~~~~ 72 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPR-TYIVTEGDKQSR---SKAEQLEK-SSSKRHKILEIPRAREV-G----QSYLT 72 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCc-EEEEEcCCcccH---HHHHHHHH-hccccceeeccceEEEe-c----hhhHh
Confidence 4456789999999999999 3333331 223333222111 11111210 00111134444322100 0 01111
Q ss_pred HHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCc--hhHHHHHHHc------CCCeEEEec
Q 045029 88 HFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFC--TCMIEVADEF------KVPSYLFFT 142 (485)
Q Consensus 88 ~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~--~~~~~~A~~l------giP~v~~~~ 142 (485)
..+.... .+-..+.-+.++ +||+||+..-. ...+.+|..+ |.+.|..-+
T Consensus 73 ~~~~~l~-~~~~~~~il~r~-----rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 73 SIFTTLR-AFLQSLRILRRE-----RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hHHHHHH-HHHHHHHHHHHh-----CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 2222222 223334444554 89999998864 4456778888 888776543
No 136
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.08 E-value=12 Score=31.02 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=46.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPD 72 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 72 (485)
|++.+|++.+.++-+|-.-..-++..|.++|.+ |+++.... ..+++.+.+. ..+.+++.++.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~v----p~e~i~~~a~----~~~~d~V~lS~ 62 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVMT----SQEEFIDAAI----ETDADAILVSS 62 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCCC----CHHHHHHHHH----HcCCCEEEEcC
Confidence 899999999999999999999999999999988 66775432 2335666554 34445554443
No 137
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.47 E-value=9 Score=33.02 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=32.3
Q ss_pred hHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHc-CCCeEEEe
Q 045029 96 HVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEF-KVPSYLFF 141 (485)
Q Consensus 96 ~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~ 141 (485)
.+...+.+|.++ +..||+||...-...++-+-+.+ ++|.+.+.
T Consensus 52 av~~a~~~L~~~---Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 52 AVARAARQLRAQ---GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHc---CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 444556667665 67899999998776677788888 99988864
No 138
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.37 E-value=2.5 Score=39.40 Aligned_cols=110 Identities=12% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchh--hHHHHHHhhceeEEeeeccccccc
Q 045029 346 NIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQF--NAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 346 ~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+|..+. .|-...++|.+.++ .|--.|-- +-.++--|+|+|.+|-.+-|+. .|.|=.+-+|+.+.+-.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------- 363 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------- 363 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-------
Confidence 344443 66666777777777 55444422 3346788999999999998875 45554455677766642
Q ss_pred ccCCcccCHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHH
Q 045029 423 IENPTVVNAEVIERG-IRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRL 476 (485)
Q Consensus 423 ~~~~~~~~~~~l~~a-v~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~ 476 (485)
.+++.+.. +++++. |+++.++.+.-.++ .++.-|...+..+++
T Consensus 364 -------~~aq~a~~~~q~ll~-dp~r~~air~nGqr---RiGqaGaa~rIAe~l 407 (412)
T COG4370 364 -------PEAQAAAQAVQELLG-DPQRLTAIRHNGQR---RIGQAGAARRIAEEL 407 (412)
T ss_pred -------CchhhHHHHHHHHhc-ChHHHHHHHhcchh---hccCcchHHHHHHHH
Confidence 23334444 444888 78777666644332 233345444444333
No 139
>PLN02501 digalactosyldiacylglycerol synthase
Probab=87.00 E-value=1.8 Score=45.60 Aligned_cols=74 Identities=8% Similarity=-0.047 Sum_probs=49.3
Q ss_pred cceEeecchh-hhhccCCccccccc---cC-chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 348 GKVIGWAPQI-AVLAHPAIGGFVSH---CG-WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 348 ~~v~~~~pq~-~vL~h~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+.+.++.++. .+++..++ ||.- =| -++++||+++|+|+|+.-..+... ... |.+..+.
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~------V~~-g~nGll~-------- 665 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF------FRS-FPNCLTY-------- 665 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce------Eee-cCCeEec--------
Confidence 4445666654 48888887 7642 23 458999999999999987765322 122 3222221
Q ss_pred ccCCcccCHHHHHHHHHHHhcC
Q 045029 423 IENPTVVNAEVIERGIRCLMEH 444 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~ 444 (485)
-+.++++++|.++|++
T Consensus 666 ------~D~EafAeAI~~LLsd 681 (794)
T PLN02501 666 ------KTSEDFVAKVKEALAN 681 (794)
T ss_pred ------CCHHHHHHHHHHHHhC
Confidence 2688999999999983
No 140
>PLN02939 transferase, transferring glycosyl groups
Probab=86.89 E-value=15 Score=40.43 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=51.9
Q ss_pred CCcceEeecchh---hhhccCCccccccc---cC-chhhHHHHhhCCcEeeccccc--cchhh--HHHHHHhhceeEEee
Q 045029 346 NIGKVIGWAPQI---AVLAHPAIGGFVSH---CG-WNSTLESIWFGVPIATWPMYA--EQQFN--AFELVVELGLAVEIK 414 (485)
Q Consensus 346 ~~~~v~~~~pq~---~vL~h~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~r~~~~~g~G~~l~ 414 (485)
+++.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |-..+ ...+...-+-|..++
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 47877777 7743 12 247899999999999876654 32221 101111114566554
Q ss_pred ecccccccccCCcccCHHHHHHHHHHHhc
Q 045029 415 MDYRNDIMIENPTVVNAEVIERGIRCLME 443 (485)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~av~~vl~ 443 (485)
..+.+.+.++|.+++.
T Consensus 915 -------------~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 -------------TPDEQGLNSALERAFN 930 (977)
T ss_pred -------------CCCHHHHHHHHHHHHH
Confidence 3477888888887764
No 141
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.57 E-value=2.4 Score=43.29 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=58.7
Q ss_pred Eeecchhh---hhccCCcccccc---ccCch-hhHHHHhhCCc----EeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 351 IGWAPQIA---VLAHPAIGGFVS---HCGWN-STLESIWFGVP----IATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 351 ~~~~pq~~---vL~h~~~~~~it---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
.+++++.+ ++..+++ ||. +-|+| +++||+++|+| +|+--+.+- + . . ..-|+.++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~-~--~-~~~g~lv~----- 410 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A-E--E-LSGALLVN----- 410 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h-h--h-cCCCEEEC-----
Confidence 36677665 4767777 663 45655 67899999999 554433221 1 1 0 13355554
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNS-EMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDF 480 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~-~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 480 (485)
.-+.++++++|.++++.++ +.+++.++..+.+.+ -+...-++.++++|
T Consensus 411 --------p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 411 --------PYDIDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred --------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 3478999999999998432 333333333333322 24444555555554
No 142
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=86.16 E-value=2.8 Score=37.29 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCcceEeecch-h--h-hhccCCccccccccC----chhhHHHHhhCCcEeeccccccc
Q 045029 346 NIGKVIGWAPQ-I--A-VLAHPAIGGFVSHCG----WNSTLESIWFGVPIATWPMYAEQ 396 (485)
Q Consensus 346 ~~~~v~~~~pq-~--~-vL~h~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ 396 (485)
.++.+.+++++ + . ++..+++ +++-.. -+++.||+++|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 56778888632 2 2 3333666 777665 68999999999999998876543
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=85.62 E-value=8 Score=37.06 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=32.3
Q ss_pred chhhhhccCCccccccccCchhhHHHHhhCCcEeeccccc
Q 045029 355 PQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA 394 (485)
Q Consensus 355 pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~ 394 (485)
|+...|+.++. +|||=-=.+-+.||++.|+|+.++|.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67788888876 3566666777899999999999999886
No 144
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=85.24 E-value=5.1 Score=40.74 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=65.6
Q ss_pred eecchhhh---hccCCcccccc---ccCch-hhHHHHhhCCc----EeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 352 GWAPQIAV---LAHPAIGGFVS---HCGWN-STLESIWFGVP----IATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 352 ~~~pq~~v---L~h~~~~~~it---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
+.+++.++ +..+++ |+. +=|+| ++.||+++|+| +|+--+.+-.. . ++-|+.++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~----l~~gllVn------ 405 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----E----LNGALLVN------ 405 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----H----hCCcEEEC------
Confidence 45566554 566666 775 44766 67899999999 66665554221 1 23456554
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHh
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFL 481 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (485)
.-+.++++++|.++++.+ .+.+++.+++.+.+.+ -+...-.++|++++.
T Consensus 406 -------P~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 406 -------PYDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred -------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 357899999999999833 3566666666666543 355556667776653
No 145
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.98 E-value=2.2 Score=35.35 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred ccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCCh
Q 045029 390 WPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSS 469 (485)
Q Consensus 390 ~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~ 469 (485)
.|....+..+|+.+++. .-+ |. .-..+.+.+.+..++.+.|+-+-.+.+++..+.++ |-..
T Consensus 78 yPWt~~~L~aa~el~ee-~ee--Ls-------------~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~---g~~v 138 (158)
T PF10083_consen 78 YPWTENALEAANELIEE-DEE--LS-------------PDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA---GSIV 138 (158)
T ss_pred CchHHHHHHHHHHHHHH-hhc--CC-------------HHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH---hHHH
Confidence 67778888888888775 222 11 23467899999999987788999999999999887 5555
Q ss_pred HHHHHHHHHHHhh
Q 045029 470 FSSMGRLIDDFLD 482 (485)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (485)
...+.+++-++.+
T Consensus 139 ~~~~~dIlVdv~S 151 (158)
T PF10083_consen 139 GDAIRDILVDVAS 151 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777776655
No 146
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=82.40 E-value=12 Score=33.22 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=23.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (485)
||++.-=-+. +-.=+..|+++|.+.||+ |+++.+..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~--V~VvAP~~ 37 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHD--VVVVAPDS 37 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSE--EEEEEESS
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCe--EEEEeCCC
Confidence 3444443333 344567899999888899 76888763
No 147
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=82.38 E-value=11 Score=36.08 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 12 PGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 12 ~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.-.|-+-|.+.|.+.|.+ +-+|.-|+++.+
T Consensus 29 ~~~g~vGp~~~l~~~l~~-~~eIv~TiiCGD 58 (349)
T PF07355_consen 29 VREGPVGPGLMLEKALKD-DAEIVATIICGD 58 (349)
T ss_pred cccCCCChHHHHHHHhcC-CCEEEEEEEECc
Confidence 345677889999999987 447777777765
No 148
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=81.92 E-value=16 Score=34.35 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.+|.+.-.|+.|--.-.-.|.++|.++||.|.|--+-|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 378899999999999999999999999999775444444
No 149
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.78 E-value=46 Score=31.22 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=52.0
Q ss_pred CCcceEeecc---hhhhhccCCccccccc---cCchh-hHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccc
Q 045029 346 NIGKVIGWAP---QIAVLAHPAIGGFVSH---CGWNS-TLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYR 418 (485)
Q Consensus 346 ~~~~v~~~~p---q~~vL~h~~~~~~itH---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~ 418 (485)
+++.+.++++ ...++..+++ ++.- .|.|. +.||+++|+|+|.-... ... .+....+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~-e~~~~~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIP-EVVEDGETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChH-HHhcCCCceE-ecC---
Confidence 4566678888 3335666766 5544 46554 59999999999766543 222 2233312466 331
Q ss_pred ccccccCCcccCHHHHHHHHHHHhcCChHHHHH
Q 045029 419 NDIMIENPTVVNAEVIERGIRCLMEHNSEMRKR 451 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~ 451 (485)
....+++.+++..+++ +.+.++.
T Consensus 326 ---------~~~~~~~~~~i~~~~~-~~~~~~~ 348 (381)
T COG0438 326 ---------PGDVEELADALEQLLE-DPELREE 348 (381)
T ss_pred ---------CCCHHHHHHHHHHHhc-CHHHHHH
Confidence 1257899999999988 5533333
No 150
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=75.80 E-value=78 Score=30.49 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=33.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||+++-..+-|++.-...+.+.|++.=.+.+|++++.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 58999999999999999999999998555668899865
No 151
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=75.74 E-value=17 Score=34.80 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=77.3
Q ss_pred hhhccCCCCcEEEEeecC-cc--cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcC
Q 045029 270 AWLDDQPESSVVFLCFGS-WG--SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTAN 346 (485)
Q Consensus 270 ~~l~~~~~~~~vyvs~GS-~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 346 (485)
+++....+++.|.+.-|+ .. ..+.+.+.++++.+...+.++++..+... + ...-+...+..++
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~---------e-----~~~~~~i~~~~~~ 236 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA---------E-----KQRAERIAEALPG 236 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH---------H-----HHHHHHHHhhCCC
Confidence 344332234456555554 33 45778889999998776788776655331 0 0011111111111
Q ss_pred CcceEe--ecch-hhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccc
Q 045029 347 IGKVIG--WAPQ-IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMI 423 (485)
Q Consensus 347 ~~~v~~--~~pq-~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~ 423 (485)
..+.+ -++| .++++++++ ||+.-- |-+.=|.+.|+|+|++ ++ +.+..+.. -+|-...+-...
T Consensus 237 -~~l~g~~sL~el~ali~~a~l--~I~~DS-gp~HlAaa~g~P~i~l--fg--~t~p~~~~-P~~~~~~~~~~~------ 301 (319)
T TIGR02193 237 -AVVLPKMSLAEVAALLAGADA--VVGVDT-GLTHLAAALDKPTVTL--YG--ATDPGRTG-GYGKPNVALLGE------ 301 (319)
T ss_pred -CeecCCCCHHHHHHHHHcCCE--EEeCCC-hHHHHHHHcCCCEEEE--EC--CCCHhhcc-cCCCCceEEccC------
Confidence 12222 2333 348888888 997654 5677788999999986 22 12222211 122221111110
Q ss_pred cCCcccCHHHHHHHHHHHh
Q 045029 424 ENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl 442 (485)
++..++.+++.++++++|
T Consensus 302 -~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 302 -SGANPTPDEVLAALEELL 319 (319)
T ss_pred -ccCCCCHHHHHHHHHhhC
Confidence 122799999999998865
No 152
>PRK14099 glycogen synthase; Provisional
Probab=74.95 E-value=51 Score=33.92 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.4
Q ss_pred CCCcEEEEEcC--------CCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCC
Q 045029 1 MKKAQLVFIPS--------PGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLP 44 (485)
Q Consensus 1 m~~~~i~~~~~--------~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (485)
|+++||++++. |+.|+ -.-+|.++|+++||+|+ ++.|...
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~d--v~~~lp~~l~~~g~~v~--v~~P~y~ 48 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLAD--VAGALPAALKAHGVEVR--TLVPGYP 48 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHH--HHHHHHHHHHHCCCcEE--EEeCCCc
Confidence 88899999864 34444 45678899999999954 7776543
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=74.45 E-value=17 Score=30.71 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 12 PGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 12 ~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
...|=-.-...|+++|+++||+ |+++++.
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~--v~v~~~~ 38 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHE--VTVVSPG 38 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-E--EEEEESS
T ss_pred CCChHHHHHHHHHHHHHHCCCE--EEEEEcC
Confidence 3556677889999999999999 6688765
No 154
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=72.68 E-value=11 Score=41.26 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=59.2
Q ss_pred hhhccCCcccccc---ccCch-hhHHHHhhCCc---Eeecc-ccccchhhHHHHHHhhc-eeEEeeecccccccccCCcc
Q 045029 358 AVLAHPAIGGFVS---HCGWN-STLESIWFGVP---IATWP-MYAEQQFNAFELVVELG-LAVEIKMDYRNDIMIENPTV 428 (485)
Q Consensus 358 ~vL~h~~~~~~it---HgG~~-s~~eal~~GvP---~v~~P-~~~DQ~~na~r~~~~~g-~G~~l~~~~~~~~~~~~~~~ 428 (485)
+++..+++ |+. .-|+| ..+|++++|+| ++++. +.+ .+.. +| -|+.++ .
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~~----l~~~allVn-------------P 427 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQS----LGAGALLVN-------------P 427 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chhh----hcCCeEEEC-------------C
Confidence 46666666 763 45888 56799999999 44443 332 2211 24 466665 4
Q ss_pred cCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHh
Q 045029 429 VNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFL 481 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (485)
.+.++++++|.++|+-+ .+.+++.+++.+.+++. +...-.++|++++.
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELN 476 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHH
Confidence 57899999999999833 35555565555555442 33444555665553
No 155
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.60 E-value=37 Score=28.55 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=73.5
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhh
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAV 359 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~v 359 (485)
.|-|-+||. .+....+++...|++.|..+-..+-.. ...|+.+. +++....-
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~sa----------------HR~p~~l~----------~~~~~~~~ 53 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASA----------------HRTPERLL----------EFVKEYEA 53 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--T----------------TTSHHHHH----------HHHHHTTT
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEec----------------cCCHHHHH----------HHHHHhcc
Confidence 455667884 467778889999999887665544332 22343322 22222110
Q ss_pred hccCCccccccccCch----hhHHHHhhCCcEeeccccccchhhHH----HHHHhhceeEEeeecccccccccCCcccCH
Q 045029 360 LAHPAIGGFVSHCGWN----STLESIWFGVPIATWPMYAEQQFNAF----ELVVELGLAVEIKMDYRNDIMIENPTVVNA 431 (485)
Q Consensus 360 L~h~~~~~~itHgG~~----s~~eal~~GvP~v~~P~~~DQ~~na~----r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~ 431 (485)
.++++ ||.=.|.. ++..++. -.|+|.+|....+..... .+.---|+++..-.- ++..++
T Consensus 54 -~~~~v--iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i---------~~~~nA 120 (150)
T PF00731_consen 54 -RGADV--IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI---------NNGFNA 120 (150)
T ss_dssp -TTESE--EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS---------THHHHH
T ss_pred -CCCEE--EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc---------cCchHH
Confidence 23344 88877755 3444433 789999998877553222 212112555443210 013455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Q 045029 432 EVIERGIRCLMEHNSEMRKRVKEMSEKARKA 462 (485)
Q Consensus 432 ~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~ 462 (485)
..++-.|-.+ . |++++++.+..++..++.
T Consensus 121 A~~A~~ILa~-~-d~~l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 121 ALLAARILAL-K-DPELREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHT-T--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C-CHHHHHHHHHHHHHHHcc
Confidence 5555544333 3 689999999999888764
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=69.94 E-value=8.7 Score=38.78 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=61.7
Q ss_pred CCcceE-eecc--hhhhhccCCccccccccC--chhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 346 NIGKVI-GWAP--QIAVLAHPAIGGFVSHCG--WNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 346 ~~~~v~-~~~p--q~~vL~h~~~~~~itHgG--~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
.|+.+. ++.+ -..++..|++-+=++|++ ..++.||+.+|+|++..=..... . .+... |-.+.
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~-~~i~~---g~l~~------ 394 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---R-DFIAS---ENIFE------ 394 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---c-ccccC---Cceec------
Confidence 455555 6666 334999999988899977 67999999999999987533221 1 11221 43333
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHNS-EMRKRVKEMSEK 458 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~~-~~r~~a~~~~~~ 458 (485)
.-+.+++.++|.++|. ++ .++++..+-++.
T Consensus 395 -------~~~~~~m~~~i~~lL~-d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 395 -------HNEVDQLISKLKDLLN-DPNQFRELLEQQREH 425 (438)
T ss_pred -------CCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 2367999999999999 55 555554444443
No 157
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.52 E-value=34 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.5
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEE
Q 045029 13 GAGHLVSTVEVARLLVDRDDRLSVTVL 39 (485)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~ 39 (485)
..|+-.....|++.|.++||+ |+++
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~--v~v~ 36 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHE--VEVV 36 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCe--EEEE
Confidence 679999999999999999999 5566
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.51 E-value=55 Score=25.99 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhh
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLA 57 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~ 57 (485)
|+++.+.++-.|.....-++..|.++|++ |.++.... ..+.+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~--V~~lg~~~----~~~~l~~~~~ 47 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFE--VIDLGVDV----PPEEIVEAAK 47 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCE--EEECCCCC----CHHHHHHHHH
Confidence 58999999999999999999999999998 55654331 2334555554
No 159
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.26 E-value=26 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=23.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEEc
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDR--DDRLSVTVLIM 41 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~r--GH~v~Vt~~~~ 41 (485)
|.|. ..+.|-++-...|+++|.++ |+.+.||+.|+
T Consensus 24 iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~ 60 (186)
T PF04413_consen 24 IWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTP 60 (186)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-C
T ss_pred EEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 4444 55789999999999999998 77766555543
No 160
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=69.08 E-value=76 Score=27.93 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE-EEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLS-VTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKES 79 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~ 79 (485)
|++..|.++...+.|-....+.+|.+.+.+|+.|. |-|+-.. . ...-..+.+. .+++.+........-..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~-~~GE~~~l~~------l~~v~~~~~g~~~~~~~- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-W-STGERNLLEF------GGGVEFHVMGTGFTWET- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-C-ccCHHHHHhc------CCCcEEEECCCCCcccC-
Confidence 34568999999999999999999999999998876 3344322 0 0011111221 23677776655321001
Q ss_pred CChHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCch
Q 045029 80 TPPKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCT 124 (485)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~ 124 (485)
.+... -...+...+....+.+. + .++|+||.|-...
T Consensus 91 ~~~~e----~~~~~~~~~~~a~~~l~-~----~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 QDRER----DIAAAREGWEEAKRMLA-D----ESYDLVVLDELTY 126 (191)
T ss_pred CCcHH----HHHHHHHHHHHHHHHHh-C----CCCCEEEEehhhH
Confidence 11111 11222223333333332 2 4899999998653
No 161
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=67.06 E-value=13 Score=38.61 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=49.7
Q ss_pred CCcceEeecch---hhhhccCCcccccccc---CchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 346 NIGKVIGWAPQ---IAVLAHPAIGGFVSHC---GWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 346 ~~~~v~~~~pq---~~vL~h~~~~~~itHg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
.++.+.++... ..++.+..+ +|.=+ |.++.+||+++|+|+| .......|... .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 45666777763 236666666 77654 7789999999999999 22222222222 3444431
Q ss_pred cccccCCcccCHHHHHHHHHHHhcCCh
Q 045029 420 DIMIENPTVVNAEVIERGIRCLMEHNS 446 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl~~~~ 446 (485)
+.++|.++|...|. +.
T Consensus 474 ----------d~~~l~~al~~~L~-~~ 489 (519)
T TIGR03713 474 ----------DISELLKALDYYLD-NL 489 (519)
T ss_pred ----------CHHHHHHHHHHHHh-CH
Confidence 57899999999999 55
No 162
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=66.83 E-value=4.4 Score=39.96 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=66.4
Q ss_pred CCcceE-eecchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccccc
Q 045029 346 NIGKVI-GWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIE 424 (485)
Q Consensus 346 ~~~~v~-~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~ 424 (485)
+++..+ +..+-.++|..+++ +||-.- ..+.|.+..+.|+|....-.|.+... + |.-...... .-+.
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~-~pg~--- 318 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEED-LPGP--- 318 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTS-SSS----
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhh-CCCc---
Confidence 444444 44567789988888 999984 47889999999999876555555321 2 332221100 0000
Q ss_pred CCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 045029 425 NPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLI 477 (485)
Q Consensus 425 ~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~ 477 (485)
-.-+.++|.++|+.+++++..++++-+++.+.+-. -.+|.++++.++.++
T Consensus 319 --~~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 319 --IVYNFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp --EESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred --eeCCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 03467999999999987334566777777777755 356777666665543
No 163
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=65.36 E-value=29 Score=36.18 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=48.3
Q ss_pred chhhhhccCCcccccc-ccCch-hhHHHHhhCCcEeeccccc-cchhhHHHHHHhh-ceeEEeeecccccccccCCcccC
Q 045029 355 PQIAVLAHPAIGGFVS-HCGWN-STLESIWFGVPIATWPMYA-EQQFNAFELVVEL-GLAVEIKMDYRNDIMIENPTVVN 430 (485)
Q Consensus 355 pq~~vL~h~~~~~~it-HgG~~-s~~eal~~GvP~v~~P~~~-DQ~~na~r~~~~~-g~G~~l~~~~~~~~~~~~~~~~~ 430 (485)
+..+++.-+++.+|-+ +=||| +++||+++|+|+|+-...+ .... ..+...- ..|+.+.... ..+ -.-+
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~--~~~----~~e~ 538 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRR--FKS----PDES 538 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCC--ccc----hHHH
Confidence 3566677777844433 45655 8999999999999987653 2222 1223220 2566665220 000 0234
Q ss_pred HHHHHHHHHHHhc
Q 045029 431 AEVIERGIRCLME 443 (485)
Q Consensus 431 ~~~l~~av~~vl~ 443 (485)
.++|++++.++++
T Consensus 539 v~~La~~m~~~~~ 551 (590)
T cd03793 539 VQQLTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHHHHhC
Confidence 5788899988886
No 164
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.30 E-value=23 Score=32.74 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
||+++..-+-| ..|++.|.++|+ |.+++++
T Consensus 2 ~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t 31 (249)
T PF02571_consen 2 KILVLGGTTEG-----RKLAERLAEAGY-VIVSVAT 31 (249)
T ss_pred EEEEEechHHH-----HHHHHHHHhcCC-EEEEEEh
Confidence 56666554444 479999999998 7666665
No 165
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=60.71 E-value=1.2e+02 Score=29.39 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||+++-..+-|++.-...+.+.|+++-.+.+|++++.+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 69999999999999999999999998666779999876
No 166
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.61 E-value=1.7e+02 Score=28.37 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=35.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
++|+++-...-|++.-...+-+.|+++..++.+++++.+
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~ 40 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPK 40 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEecc
Confidence 479999999999999999999999999988889999876
No 167
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=59.32 E-value=53 Score=29.12 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLP 71 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 71 (485)
+.++++.+.++-.|-....-++..|..+|++ |+++.... ....+.+.+. ..+.+++.++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~--vi~lG~~~----p~~~l~~~~~----~~~~d~v~lS 140 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFE--VIDLGRDV----PPEEFVEAVK----EHKPDILGLS 140 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCE--EEECCCCC----CHHHHHHHHH----HcCCCEEEEe
Confidence 4689999999999999999999999999988 65665332 2335666554 3344445443
No 168
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=57.46 E-value=16 Score=29.70 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+||++...|+.+=.. ...+.+.|.++|++ |+++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~--v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWE--VRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSE--EEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCE--EEEEECC
Confidence 368888888876666 99999999999999 5577666
No 169
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=56.45 E-value=1.4e+02 Score=29.06 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=35.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+||+++-...-|++.-...+.+.|+++-.+.+|++++.+
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~ 44 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 44 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEecc
Confidence 489999999999999999999999998666778899876
No 170
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=56.14 E-value=1.9e+02 Score=27.65 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCcceE-eecc---hhhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccc
Q 045029 346 NIGKVI-GWAP---QIAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRN 419 (485)
Q Consensus 346 ~~~~v~-~~~p---q~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~ 419 (485)
+++.+. +++| +..+|+.++++.|+++ =|.|++.-.++.|+|++.- -+=++|... .+. |+-+-.+.+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl-~e~-gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDL-TEQ-GLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHH-HhC-CCeEEecCC---
Confidence 345443 6665 6679999999999886 4899999999999999986 455566543 554 777654443
Q ss_pred cccccCCcccCHHHHHHHHHHHh
Q 045029 420 DIMIENPTVVNAEVIERGIRCLM 442 (485)
Q Consensus 420 ~~~~~~~~~~~~~~l~~av~~vl 442 (485)
.++...+.++=+++.
T Consensus 278 --------~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 --------DLDEDIVREAQRQLA 292 (322)
T ss_pred --------cccHHHHHHHHHHHH
Confidence 677777766644433
No 171
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=55.28 E-value=20 Score=33.80 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccc
Q 045029 290 SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFV 369 (485)
Q Consensus 290 ~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~i 369 (485)
..+.+..+++.+||....++.||.++++. +-..+.++++...+-.||+. ||
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~---------------------------ga~rlL~~ld~~~~~~~pK~--~i 95 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY---------------------------GANRLLPYLDYDLIRANPKI--FV 95 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC---------------------------CHHHhhhhCCHHHHhhCCeE--EE
Confidence 34556688899999999999999998873 11344555655555566666 76
Q ss_pred cccCchhhHHHHhh--CCcEeecccccc
Q 045029 370 SHCGWNSTLESIWF--GVPIATWPMYAE 395 (485)
Q Consensus 370 tHgG~~s~~eal~~--GvP~v~~P~~~D 395 (485)
=..-..+++-+++. |++.+--|+..+
T Consensus 96 GySDiTaL~~~l~~~~g~~t~hGp~~~~ 123 (282)
T cd07025 96 GYSDITALHLALYAKTGLVTFHGPMLAS 123 (282)
T ss_pred EecHHHHHHHHHHHhcCceEEECccccc
Confidence 66666666666653 777777775433
No 172
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.25 E-value=1e+02 Score=30.82 Aligned_cols=37 Identities=14% Similarity=0.348 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
..|+++-.=+.|-..-.-.||+.|..+|+. |-+++.+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~k--vllVaaD 137 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKK--VLLVAAD 137 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCc--eEEEecc
Confidence 357777777999999999999999999998 5466655
No 173
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=54.09 E-value=35 Score=28.94 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=26.7
Q ss_pred EEEEeecCcccCCHHHHHHHHHHHHhcCCceEEE
Q 045029 280 VVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWS 313 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~ 313 (485)
.+|+|+||........++..+.+|.+.+.--|+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999988777778899999998876432343
No 174
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=53.45 E-value=19 Score=31.76 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
++.||++.-.|+.|=+.-...+++.|.++||+ |.++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~--V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAE--VTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCE--EEEEECH
Confidence 45677777776544444379999999999999 5567665
No 175
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=53.33 E-value=93 Score=23.26 Aligned_cols=27 Identities=7% Similarity=0.260 Sum_probs=18.5
Q ss_pred CCccEEEECCC---------chhHHHHHHHcCCCeE
Q 045029 112 PRLAGFVLDMF---------CTCMIEVADEFKVPSY 138 (485)
Q Consensus 112 ~~~D~vI~D~~---------~~~~~~~A~~lgiP~v 138 (485)
.++|+||+-+. ......+|...+||++
T Consensus 54 g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 48999997432 1123467888999975
No 176
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=52.26 E-value=1.6e+02 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=26.8
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 7 VFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 7 ~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+++.....|-..-+++-++....+|-. |.++++.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~--v~vfkp~ 41 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMK--VLVFKPA 41 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCe--EEEEecc
Confidence 344444789999999999999999977 5577655
No 177
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=52.17 E-value=15 Score=34.41 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.7
Q ss_pred ccCchhhH--HHHhhCCcEeeccccccchhhHHHHHHhhcee
Q 045029 371 HCGWNSTL--ESIWFGVPIATWPMYAEQQFNAFELVVELGLA 410 (485)
Q Consensus 371 HgG~~s~~--eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G 410 (485)
=||||+++ -|-.+||=++++-+...|..++..-++..|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 58999765 45667999999999999999998755545887
No 178
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=51.71 E-value=41 Score=31.37 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=32.7
Q ss_pred cceEeecchhhhhccCCccccccccCchhhHHHHhhCCcEeecc
Q 045029 348 GKVIGWAPQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWP 391 (485)
Q Consensus 348 ~~v~~~~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P 391 (485)
+.+.+-++-.++|.+++. +||-.+. .-+||+.+|+|++++.
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEec
Confidence 344466787889999988 8876654 6789999999999975
No 179
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.45 E-value=99 Score=27.31 Aligned_cols=87 Identities=14% Similarity=0.241 Sum_probs=52.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhh---hhhhhhhccCCCCCeEEEECCCCCCCCCCCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVA---TYTQSLAASNLSSRIKFINLPDDQPDKESTP 81 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~ 81 (485)
.|+|+-..+.|-..-...||..++.+|.. |.+++...-+..+.. .|.+ ..++.+....... +
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~--v~lis~D~~R~ga~eQL~~~a~-------~l~vp~~~~~~~~------~ 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKK--VALISADTYRIGAVEQLKTYAE-------ILGVPFYVARTES------D 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHHHHHHHHHHH-------HHTEEEEESSTTS------C
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhcccc--ceeecCCCCCccHHHHHHHHHH-------Hhccccchhhcch------h
Confidence 46677777999999999999999999888 668887643332222 2222 2366666544322 1
Q ss_pred hHhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCC
Q 045029 82 PKRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMF 122 (485)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~ 122 (485)
+.. .+.+.++++..+ +.|+|+.|..
T Consensus 68 ~~~-----------~~~~~l~~~~~~-----~~D~vlIDT~ 92 (196)
T PF00448_consen 68 PAE-----------IAREALEKFRKK-----GYDLVLIDTA 92 (196)
T ss_dssp HHH-----------HHHHHHHHHHHT-----TSSEEEEEE-
T ss_pred hHH-----------HHHHHHHHHhhc-----CCCEEEEecC
Confidence 111 223444444333 7899999975
No 180
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=51.17 E-value=23 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHH
Q 045029 430 NAEVIERGIRCLMEHNSEMRKRVKEM 455 (485)
Q Consensus 430 ~~~~l~~av~~vl~~~~~~r~~a~~~ 455 (485)
|+++|..||..+.++.-++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57889999999988435788887765
No 181
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=50.24 E-value=75 Score=21.26 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 045029 430 NAEVIERGIRCLMEHNSEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 430 ~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~ 463 (485)
|.++|+++|+++|....--.--.+.+.+.+.+..
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~ 34 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERF 34 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHH
Confidence 4678888888888732211122344455555443
No 182
>PRK10867 signal recognition particle protein; Provisional
Probab=49.28 E-value=1.5e+02 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=30.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDR-DDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~ 42 (485)
.|+++..++.|-..-...||..|+.+ |+. |.+++.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~k--V~lV~~D 138 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKK--VLLVAAD 138 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCc--EEEEEcc
Confidence 56777888999999999999999999 988 5577665
No 183
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=48.46 E-value=29 Score=27.87 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=23.3
Q ss_pred EEEEEcCCCcc---CHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAG---HLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~G---H~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||+|+--|-.+ .-.-.++|+.+.++|||+ |.++.+.
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhe--v~~~~~~ 40 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHE--VFYYEPG 40 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-E--EEEE-GG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCE--EEEEEcC
Confidence 56666666544 345678999999999999 6576544
No 184
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.01 E-value=1.5e+02 Score=29.23 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
-|.|+-.-+.|-..-.-.||..+..+|.. +.+++.+
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K--~~LvcaD 138 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYK--VALVCAD 138 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCc--eeEEeec
Confidence 56677777889999999999999999988 5566655
No 185
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=47.65 E-value=1.6e+02 Score=29.60 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=30.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.|+|+-.++.|-..-...||..|+.+|+. |.++++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~k--V~lV~~D 137 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFK--PCLVCAD 137 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEcCc
Confidence 57778888999999999999999999988 5577665
No 186
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=46.96 E-value=36 Score=31.06 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=49.8
Q ss_pred CcEEEEeecCcc---cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcc-eEe-
Q 045029 278 SSVVFLCFGSWG---SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGK-VIG- 352 (485)
Q Consensus 278 ~~~vyvs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-v~~- 352 (485)
++.|.+..|+.. ..+.+.+.++++.|.+.+.++++..+... . ....-+...+...+++. +.+
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~ 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE----------Q---EKEIADQIAAGLQNPVINLAGK 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH----------H---HHHHHHHHHTTHTTTTEEETTT
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH----------H---HHHHHHHHHHhcccceEeecCC
Confidence 457777777754 55778899999999887766654433220 0 00000001111111111 111
Q ss_pred -ecc-hhhhhccCCccccccccCchhhHHHHhhCCcEeec
Q 045029 353 -WAP-QIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390 (485)
Q Consensus 353 -~~p-q~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~ 390 (485)
-+. ...++.++++ +|+.-. |.+.=|.+.|+|+|++
T Consensus 172 ~~l~e~~ali~~a~~--~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 172 TSLRELAALISRADL--VIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp S-HHHHHHHHHTSSE--EEEESS-HHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHhcCCE--EEecCC-hHHHHHHHHhCCEEEE
Confidence 123 3457888888 887665 6688899999999998
No 187
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=46.85 E-value=1.2e+02 Score=28.02 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCC-CCCCCCCCChHhHHHHHHHhhhhhHH
Q 045029 20 TVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPD-DQPDKESTPPKRFFGHFVESKKPHVK 98 (485)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (485)
+.+|++.|. .+++ |+++.|. ...+...... +...-++...+.. ...-.+. -...+.
T Consensus 16 i~aL~~al~-~~~d--V~VVAP~-----~~qSg~s~sl--Tl~~Plr~~~~~~~~~av~GT-------------PaDCV~ 72 (252)
T COG0496 16 IRALARALR-EGAD--VTVVAPD-----REQSGASHSL--TLHEPLRVRQVDNGAYAVNGT-------------PADCVI 72 (252)
T ss_pred HHHHHHHHh-hCCC--EEEEccC-----CCCccccccc--ccccCceeeEeccceEEecCC-------------hHHHHH
Q ss_pred HHHHhhhhcCCCCCCccEEEE----------CCCchhHHHHHHH---cCCCeEEEe
Q 045029 99 EVVANLTDESPDSPRLAGFVL----------DMFCTCMIEVADE---FKVPSYLFF 141 (485)
Q Consensus 99 ~~l~~l~~~~~~~~~~D~vI~----------D~~~~~~~~~A~~---lgiP~v~~~ 141 (485)
-.+..+.++ ..||+||+ |....+++.+|.. +|||.|.++
T Consensus 73 lal~~l~~~----~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S 124 (252)
T COG0496 73 LGLNELLKE----PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAIS 124 (252)
T ss_pred HHHHHhccC----CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeee
No 188
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.78 E-value=2.2e+02 Score=27.55 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=64.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeE-EEECCCCCCCCCCCChH
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIK-FINLPDDQPDKESTPPK 83 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-f~~l~~~~~~~~~~~~~ 83 (485)
||+++-..+-|++.-...+.+.|+++=.+..|++++.+ .+.+.+. ..+.++ ++.++.... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~--------~~~~l~~---~~p~vd~vi~~~~~~~-----~-- 62 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQ--------ETIPILS---ENPDINALYGLDRKKA-----K-- 62 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECc--------ChHHHHh---cCCCccEEEEeChhhh-----c--
Confidence 58899999999999999999999998556778899876 2222221 123443 333332210 0
Q ss_pred hHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEE
Q 045029 84 RFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYL 139 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 139 (485)
.....+. .....+..+.+ .++|++|.=........++...|.|.-+
T Consensus 63 ~~~~~~~-----~~~~l~~~lr~-----~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 63 AGERKLA-----NQFHLIKVLRA-----NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred chHHHHH-----HHHHHHHHHHh-----CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0000110 11233445543 3899988543344556788888999655
No 189
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=46.50 E-value=1.3e+02 Score=28.00 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCCCCeEEEEE
Q 045029 20 TVEVARLLVDRDDRLSVTVL 39 (485)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~ 39 (485)
-..|++.|.++||+|.++..
T Consensus 12 gr~la~~L~~~g~~v~~s~~ 31 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVT 31 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEc
Confidence 67899999999999654333
No 190
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.12 E-value=30 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCe
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRL 34 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v 34 (485)
|+++||++.+.+.-||=.-.--+++.|++.|.+|
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeV 43 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEV 43 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceE
Confidence 5789999999999999999999999999999773
No 191
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.01 E-value=1.4e+02 Score=28.92 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=58.5
Q ss_pred CcEEEEeecCcc---cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhc-CCcc-eEe
Q 045029 278 SSVVFLCFGSWG---SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTA-NIGK-VIG 352 (485)
Q Consensus 278 ~~~vyvs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~-v~~ 352 (485)
++.|.+.-|+.. ..+.+.+.++++.|...+.++++..+.... +...-+...+..+ .++. +.+
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~-------------e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKD-------------ELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHH-------------HHHHHHHHHhhCCCCcccccCC
Confidence 457777777753 446788889999887778887765432200 0000011111111 1111 222
Q ss_pred --ecch-hhhhccCCccccccccCchhhHHHHhhCCcEeec
Q 045029 353 --WAPQ-IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390 (485)
Q Consensus 353 --~~pq-~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~ 390 (485)
-+.| .+++.++++ ||+. -.|-+.=|.+.|+|+|++
T Consensus 248 ~~sL~el~ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 2333 348888888 9988 567889999999999987
No 192
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=45.32 E-value=1.7e+02 Score=26.91 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC---ChHhHHHHHHHhhhhh
Q 045029 20 TVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST---PPKRFFGHFVESKKPH 96 (485)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~ 96 (485)
+.+|+++|.+.| + |+++.+. ...+...... +....+++..+.......... .+.. .
T Consensus 16 i~aL~~~l~~~g-~--V~VvAP~-----~~~Sg~g~ai--t~~~pl~~~~~~~~~~~~~~~v~GTPaD-----------c 74 (244)
T TIGR00087 16 IRALYQALKELG-E--VTVVAPA-----RQRSGTGHSL--TLFEPLRVGQVKVKNGAHIYAVDGTPTD-----------C 74 (244)
T ss_pred HHHHHHHHHhCC-C--EEEEeCC-----CCccccccCc--CCCCCeEEEEeccCCCccEEEEcCcHHH-----------H
Q ss_pred HHHHHHhhhhcCCCCCCccEEE----------ECCCchhHHHHHHH---cCCCeEEEe
Q 045029 97 VKEVVANLTDESPDSPRLAGFV----------LDMFCTCMIEVADE---FKVPSYLFF 141 (485)
Q Consensus 97 ~~~~l~~l~~~~~~~~~~D~vI----------~D~~~~~~~~~A~~---lgiP~v~~~ 141 (485)
+.-.+..+... +||+|| .|.+..+++.+|.. +|||.+.++
T Consensus 75 v~~gl~~l~~~-----~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S 127 (244)
T TIGR00087 75 VILGINELMPE-----VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAIS 127 (244)
T ss_pred HHHHHHHhccC-----CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEE
No 193
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=45.30 E-value=32 Score=32.98 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCccccc
Q 045029 290 SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFV 369 (485)
Q Consensus 290 ~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~i 369 (485)
..+.+...++.+|+....++.||.++++. +-..+.++++...+-.||++ ||
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~---------------------------g~~rlL~~lD~~~i~~~PK~--fi 99 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGD---------------------------DSNELLPYLDYELIKKNPKI--FI 99 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCccc---------------------------CHhhhhhhcCHHHHhhCCCE--EE
Confidence 33556688899999999999999998763 11234455555555566665 66
Q ss_pred cccCchhhHHHHh--hCCcEeeccccc
Q 045029 370 SHCGWNSTLESIW--FGVPIATWPMYA 394 (485)
Q Consensus 370 tHgG~~s~~eal~--~GvP~v~~P~~~ 394 (485)
=..-..+++-+++ +|++.+--|+..
T Consensus 100 GySDiTaL~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 100 GYSDITALHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred eccHHHHHHHHHHHhcCCeEEECcccc
Confidence 5555555655553 366666666543
No 194
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=44.45 E-value=2e+02 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCCeEEEEEEcC
Q 045029 20 TVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+.+|+++|++ +|+ |+++.|.
T Consensus 16 l~aL~~~l~~-~~~--V~VvAP~ 35 (253)
T PRK13933 16 INTLAELLSK-YHE--VIIVAPE 35 (253)
T ss_pred HHHHHHHHHh-CCc--EEEEccC
Confidence 7788888876 578 6677765
No 195
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=44.39 E-value=98 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Q 045029 429 VNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKAL 463 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~ 463 (485)
.++.-++..|-.+ . |++++++.+.+++..++.+
T Consensus 116 ~nAa~~AaqIl~~-~-d~~l~~kl~~~r~~~~~~v 148 (156)
T TIGR01162 116 GNAALLAAQILGI-K-DPELAEKLKEYRENQKEEV 148 (156)
T ss_pred hHHHHHHHHHHcC-C-CHHHHHHHHHHHHHHHHHH
Confidence 3444444444222 3 4667777777766666654
No 196
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=44.38 E-value=1.5e+02 Score=27.48 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCC---ChHhHHHHHHHhhhhh
Q 045029 20 TVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKEST---PPKRFFGHFVESKKPH 96 (485)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~ 96 (485)
+.+|+++|.+.| + |+++.|. ...+...... +....+++..+.......... .+.. .
T Consensus 21 i~aL~~~l~~~g-~--V~VvAP~-----~~~Sg~g~ai--t~~~pl~~~~~~~~~~~~~y~v~GTPaD-----------C 79 (257)
T PRK13932 21 IHVLAASMKKIG-R--VTVVAPA-----EPHSGMSHAM--TLGVPLRIKEYQKNNRFFGYTVSGTPVD-----------C 79 (257)
T ss_pred HHHHHHHHHhCC-C--EEEEcCC-----CCCCCCcccc--cCCCCeEEEEEccCCCceEEEEcCcHHH-----------H
Q ss_pred HHHHHHhhhhcCCCCCCccEEE----------ECCCchhHHHHHHH---cCCCeEEEe
Q 045029 97 VKEVVANLTDESPDSPRLAGFV----------LDMFCTCMIEVADE---FKVPSYLFF 141 (485)
Q Consensus 97 ~~~~l~~l~~~~~~~~~~D~vI----------~D~~~~~~~~~A~~---lgiP~v~~~ 141 (485)
+.-.+..+... +||+|| .|.+..+++.+|.. +|||.+.++
T Consensus 80 V~lal~~~~~~-----~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S 132 (257)
T PRK13932 80 IKVALSHILPE-----KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFS 132 (257)
T ss_pred HHHHHHhhcCC-----CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEE
No 197
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=44.36 E-value=1.8e+02 Score=29.29 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEE
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLF 140 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 140 (485)
.+||++|... .+..+|+++|||.+-+
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEe
Confidence 3999999873 4567899999998764
No 198
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.13 E-value=1.7e+02 Score=29.19 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
..|+++-.++.|=..-...||..|..+|.. |.+++++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gkk--VglI~aD 278 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKT--VGFITTD 278 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCc--EEEEecC
Confidence 367888888999999999999999999987 5577765
No 199
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=42.03 E-value=72 Score=26.56 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=29.5
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEc
Q 045029 278 SSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLR 315 (485)
Q Consensus 278 ~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~ 315 (485)
..+|++++||......+.++++++.+. .+.+++++.-
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 359999999998778888999998884 4578777653
No 200
>PRK05595 replicative DNA helicase; Provisional
Probab=41.98 E-value=2.3e+02 Score=28.74 Aligned_cols=37 Identities=11% Similarity=0.335 Sum_probs=29.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLV-DRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|=..-.+.+|..++ +.|+. |.+++.+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~--vl~fSlEm 240 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKS--VAIFSLEM 240 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCc--EEEEecCC
Confidence 356788889999999999999876 56887 65887663
No 201
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=41.75 E-value=43 Score=26.54 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=30.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
|+++...+..-|-.-+..++..|.++||+ |.++-
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~--v~~~d 35 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHE--VDILD 35 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBE--EEEEE
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCe--EEEEC
Confidence 68999999999999999999999999999 55664
No 202
>PRK06321 replicative DNA helicase; Provisional
Probab=41.32 E-value=1.5e+02 Score=30.41 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=29.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|-..-.+.+|...+. .|.. |.|++-+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~--v~~fSLEM 265 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLP--VGIFSLEM 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCe--EEEEeccC
Confidence 3677888899999999999999874 5766 65887664
No 203
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.70 E-value=18 Score=31.69 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCCeEEEEEEcC
Q 045029 2 KKAQLVFIPSPGAGHLVS------------TVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P------------~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
++.||++...|++=.+.| -..||+++..||++ ||++..+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~--V~li~g~ 52 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAE--VTLIHGP 52 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-E--EEEEE-T
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCE--EEEEecC
Confidence 455677766666555544 46899999999999 7799866
No 204
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=40.56 E-value=2.7e+02 Score=28.07 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEEe
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLFF 141 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 141 (485)
.+||++|... ....+|+++|||.+.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 4999999874 34568999999988743
No 205
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.27 E-value=58 Score=28.15 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=22.6
Q ss_pred ccCCccccccccCchhhHHHHhhCCcEeeccccc
Q 045029 361 AHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA 394 (485)
Q Consensus 361 ~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~ 394 (485)
.+..+.++|++||...+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4455566999999999998877 99999999864
No 206
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=39.52 E-value=2.1e+02 Score=24.75 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
..|-+++..+.|-... +++..|++.||+.+|.++.
T Consensus 4 G~i~vytG~GKGKTTA--AlGlalRA~G~G~rV~ivQ 38 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTA--ALGLALRAAGHGMRVLIVQ 38 (172)
T ss_dssp --EEEEESSSS-HHHH--HHHHHHHHHCTT--EEEEE
T ss_pred cEEEEEeCCCCCchHH--HHHHHHHHHhCCCEEEEEE
Confidence 3577788888887774 5666677777776666663
No 207
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=39.52 E-value=48 Score=36.09 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=61.1
Q ss_pred eEeecchhh---hhccCCccccccc---cCch-hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccccc
Q 045029 350 VIGWAPQIA---VLAHPAIGGFVSH---CGWN-STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIM 422 (485)
Q Consensus 350 v~~~~pq~~---vL~h~~~~~~itH---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~ 422 (485)
+.+++++.+ ++..+++ |+.- -|+| .++|++++|+|-...|...+--.-+.. +.-|+.++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~----l~~~llv~-------- 411 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE----LAEALLVN-------- 411 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHH----hCcCeEEC--------
Confidence 336777765 5556666 6643 4655 678999997752222222211111111 12366665
Q ss_pred ccCCcccCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 423 IENPTVVNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 423 ~~~~~~~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
.-+.++++++|.++++.+ .+.+++.+++.+.+++ -+...-+++|++.+.+
T Consensus 412 -----P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 412 -----PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELRE 462 (726)
T ss_pred -----CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHH
Confidence 347899999999999832 2445555544444432 3455566666665543
No 208
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=39.42 E-value=2.4e+02 Score=23.97 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-c-CCcceEeecc----------hhhhhccCC
Q 045029 297 KEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-A-NIGKVIGWAP----------QIAVLAHPA 364 (485)
Q Consensus 297 ~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~v~~~~p----------q~~vL~h~~ 364 (485)
+.+++.|++.|++.++-+.+.. .++ +.+.. . ..+.++..-- +-..-..
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~----------------~~~--l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~-- 63 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDS----------------ING--LMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGK-- 63 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCc----------------hHH--HHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCC--
Confidence 4578889999999988776542 011 11111 1 2233332111 1112233
Q ss_pred ccccccccCch------hhHHHHhhCCcEeecc
Q 045029 365 IGGFVSHCGWN------STLESIWFGVPIATWP 391 (485)
Q Consensus 365 ~~~~itHgG~~------s~~eal~~GvP~v~~P 391 (485)
.+++++|+|-| ++.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44489998854 7899999999999995
No 209
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.16 E-value=2.3e+02 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=29.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLV-DRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~ 42 (485)
-++++..++.|-..-...||..|. ++|.. |.++..+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~k--V~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKK--VLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCe--EEEEecc
Confidence 567778889999999999999997 58877 5577665
No 210
>PRK06270 homoserine dehydrogenase; Provisional
Probab=38.91 E-value=2.2e+02 Score=27.64 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=34.2
Q ss_pred chhhhhccCCcccccc------ccC---chhhHHHHhhCCcEee---ccccccchhhHHHHHHhhceeEEe
Q 045029 355 PQIAVLAHPAIGGFVS------HCG---WNSTLESIWFGVPIAT---WPMYAEQQFNAFELVVELGLAVEI 413 (485)
Q Consensus 355 pq~~vL~h~~~~~~it------HgG---~~s~~eal~~GvP~v~---~P~~~DQ~~na~r~~~~~g~G~~l 413 (485)
.-.++|.++.+.++|- |+| ..-+.+|+.+|+++|+ -|+...-..- .++++..|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL-~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKEL-KELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHH-HHHHHHcCCEEEE
Confidence 4456776665554554 443 4456899999999999 4765422222 2334333666554
No 211
>PRK08506 replicative DNA helicase; Provisional
Probab=38.90 E-value=1.5e+02 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=31.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (485)
=+++...|+.|=..-.+.+|...+..|+. |.|++.+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~--V~~fSlEM 230 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKG--VAFFSLEM 230 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCc--EEEEeCcC
Confidence 46778888999999999999999888988 66887764
No 212
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=38.85 E-value=96 Score=26.47 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHh-CCCCeEEEE
Q 045029 16 HLVSTVEVARLLVD-RDDRLSVTV 38 (485)
Q Consensus 16 H~~P~l~La~~L~~-rGH~v~Vt~ 38 (485)
|...-.+|+++|.+ +|+++.|.+
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77788899999988 677766544
No 213
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.84 E-value=46 Score=29.06 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=26.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||++.-.|+.|=+. ...+.+.|.++|++ |.++.++
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~--V~vv~T~ 37 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQ--VTVLMTK 37 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCE--EEEEECh
Confidence 57777777666555 89999999999999 5466665
No 214
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=38.28 E-value=27 Score=35.47 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=39.0
Q ss_pred hhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHHHHHHhcCChHHHHHHHH
Q 045029 376 STLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERGIRCLMEHNSEMRKRVKE 454 (485)
Q Consensus 376 s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~ 454 (485)
++.||+++|.|+++.=-++ -+.- +...--|..++.. .-....+++++.+..+ |++++.+..+
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~Ei-V~~~~tG~l~dp~-----------~e~~~~~a~~~~kl~~-~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEI-VVHGVTGLLIDPG-----------QEAVAELADALLKLRR-DPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEE-EEcCCcceeeCCc-----------hHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 6899999999999874433 1111 2222345544421 2233479999999999 7877666544
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=38.25 E-value=3.4e+02 Score=25.39 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=30.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.|+|+..++.|-..-...||..|+++|+. |.++..+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~--V~li~~D 109 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKS--VLLAAGD 109 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCE--EEEEeCC
Confidence 56777778999999999999999999988 5577655
No 216
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.08 E-value=1.8e+02 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhh
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLA 57 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~ 57 (485)
+.++++.+.++-.|-....-++..|..+|.+ |+++.... ..+.+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~--Vi~LG~~v----p~e~~v~~~~ 136 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYE--VIDLGVMV----PIEKILEAAK 136 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCE--EEECCCCC----CHHHHHHHHH
Confidence 4689999999999999999999999999988 66775442 2335666665
No 217
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.90 E-value=90 Score=30.50 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=54.7
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCCh-hhHhh-hc----CCc-c--
Q 045029 279 SVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPE-GFMDR-TA----NIG-K-- 349 (485)
Q Consensus 279 ~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~-~~----~~~-~-- 349 (485)
.+++.+-||-....+. ..+++.|++.++.++|+......+.. .+|+ ++.-. .+ .+. .
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~~------------l~~~~g~~~~~~~~~~l~~~~~~~ 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEKT------------IIEKENIPYYSISSGKLRRYFDLK 68 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccccc------------cCcccCCcEEEEeccCcCCCchHH
Confidence 3788888886544443 45677777789999998755432111 1121 11000 00 000 0
Q ss_pred --------eEeecchhhhhccCCccccccccCchh---hHHHHhhCCcEeec
Q 045029 350 --------VIGWAPQIAVLAHPAIGGFVSHCGWNS---TLESIWFGVPIATW 390 (485)
Q Consensus 350 --------v~~~~pq~~vL~h~~~~~~itHgG~~s---~~eal~~GvP~v~~ 390 (485)
+..+.--..++.+-+-.++|++||+=| +..|...|+|+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 69 NIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 001111112344333334999999997 89999999999874
No 218
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=37.67 E-value=5.1e+02 Score=28.58 Aligned_cols=163 Identities=14% Similarity=0.175 Sum_probs=90.8
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCC-----CCCCCCCCCCCC---------CCCChhhHhhh
Q 045029 279 SVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKD-----TFEKPSDYEDPT---------EVLPEGFMDRT 344 (485)
Q Consensus 279 ~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~---------~~~p~~~~~~~ 344 (485)
..+|+++=-+.-.+..++...++.+.+.|+|++..+|.+..+. ..++.++.++.. ..+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 4888877555555667788899999999999999998753110 011111111100 11222111122
Q ss_pred cCCcceEee-cchhhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccc
Q 045029 345 ANIGKVIGW-APQIAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMI 423 (485)
Q Consensus 345 ~~~~~v~~~-~pq~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~ 423 (485)
..++.+... -||.-+ -+.|+|..--=++. +.+|----|-.+-.. .+|+.+...
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivA--MTGDGVNDApALK~A-dIGIAMG~~------- 705 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVA--MTGDGVNDAPALKKA-DIGIAMGIS------- 705 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEE--ecCCCccchhhhhhc-ccceeecCC-------
Confidence 223333322 233221 14455554444333 355555555555554 788877422
Q ss_pred cCCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 424 ENPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 424 ~~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
-.+.-++|-+=||.+| .+ + .+-.++++|.+-++++++||.++++
T Consensus 706 ------GTdVaKeAsDMVL~DD-nF-------s-tIvaAVEEGr~IynNik~Fir~~lS 749 (972)
T KOG0202|consen 706 ------GTDVAKEASDMVLADD-NF-------S-TIVAAVEEGRAIYNNIKNFIRYLLS 749 (972)
T ss_pred ------ccHhhHhhhhcEEecC-cH-------H-HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 2334466666677743 33 2 2334578899999999999998875
No 219
>PLN02470 acetolactate synthase
Probab=37.67 E-value=93 Score=32.88 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=51.4
Q ss_pred eecCcccCCH--HHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-c-CCcceEeec-chhh
Q 045029 284 CFGSWGSFGE--DQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-A-NIGKVIGWA-PQIA 358 (485)
Q Consensus 284 s~GS~~~~~~--~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~~v~~~~-pq~~ 358 (485)
+|||....+. ..-+.+++.|++.|++.|+-+.+... + .+.+.. . .++.++.-- .+.+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~----------------~--~l~dal~~~~~i~~i~~rhE~~A 63 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS----------------M--EIHQALTRSNCIRNVLCRHEQGE 63 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc----------------H--HHHHHHhccCCceEEEeccHHHH
Confidence 4777653333 22556888888888888887765420 1 111111 1 123232110 1111
Q ss_pred h-------hccCCccccccccCch------hhHHHHhhCCcEeecc
Q 045029 359 V-------LAHPAIGGFVSHCGWN------STLESIWFGVPIATWP 391 (485)
Q Consensus 359 v-------L~h~~~~~~itHgG~~------s~~eal~~GvP~v~~P 391 (485)
. ..+-.++++++|.|-| ++.+|...++|||++.
T Consensus 64 ~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 64 VFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1 1223455699999854 8899999999999995
No 220
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.60 E-value=1.3e+02 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.324 Sum_probs=31.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
++|++.-.|+.|-..-.+.++..|.++|..|. -|++++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-Gf~t~E 43 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-GFITPE 43 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee-eEEeee
Confidence 58999999999999999999999999997743 245443
No 221
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=37.18 E-value=1.8e+02 Score=25.45 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=40.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE--cCCCCCchhhhhhhhhhccCCCCCeEEEECCCCC
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI--MKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQ 74 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~ 74 (485)
|+|+..+..-|-.=+..+++.|++.|-. |.++. .........+.|.+.+ +...+-+|+.++.+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~--v~vI~~G~~~~~~~~l~~~~~~~---~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVS--VDIINFGEIDDNTEKLTAFIDAV---NGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCe--EEEEEeCCCCCCHHHHHHHHHHh---cCCCCceEEEeCCCC
Confidence 7777788777877777899999998854 44443 2222222344566655 233456777777653
No 222
>PRK05973 replicative DNA helicase; Provisional
Probab=37.17 E-value=1.5e+02 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=30.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
=+++..-|+.|=..-.++++...+.+|+. |.|++.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~--vlyfSlE 101 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRT--GVFFTLE 101 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCe--EEEEEEe
Confidence 46777888999999999999999999988 5577766
No 223
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=36.68 E-value=63 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=26.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDR 33 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~ 33 (485)
-++++..+...|..-+-.+|+.|++.|..
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~ 45 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYA 45 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCE
Confidence 57888999999999999999999999955
No 224
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=36.52 E-value=3.3e+02 Score=26.01 Aligned_cols=39 Identities=5% Similarity=0.131 Sum_probs=33.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+||+++-..+-|++.-...+.+.|+++=.+.+||+++.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 379999999999999999999999997445668899876
No 225
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=36.37 E-value=2.9e+02 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=28.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+++..-|+.|...-...+|..++++|+. |-++..+
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~--vLlvd~D 37 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKK--VLLVSTD 37 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCC--ceEEeCC
Confidence 4556678999999999999999999988 4467655
No 226
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=36.21 E-value=1.6e+02 Score=28.16 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=73.5
Q ss_pred cEEEEeec-Ccc--cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEe--e
Q 045029 279 SVVFLCFG-SWG--SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIG--W 353 (485)
Q Consensus 279 ~~vyvs~G-S~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~--~ 353 (485)
+.|.+..| |.. .-+.+.+.++++.+.+.+.++++..|... | ...-+...+.. .++.+++ .
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~---------e-----~~~~~~i~~~~-~~~~l~g~~s 243 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH---------E-----EQRAKRLAEGF-PYVEVLPKLS 243 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH---------H-----HHHHHHHHccC-CcceecCCCC
Confidence 35544444 433 45778889999998777778766544321 0 00001111111 1122222 2
Q ss_pred cchh-hhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHH
Q 045029 354 APQI-AVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAE 432 (485)
Q Consensus 354 ~pq~-~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~ 432 (485)
+.|. .++.++++ ||+... |.+.=|.+.|+|+|++=-..|...++- +|-....... ..+|...++.+
T Consensus 244 L~elaali~~a~l--~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p-----~~~~~~~~~~-----~~~cm~~I~~e 310 (322)
T PRK10964 244 LEQVARVLAGAKA--VVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGG-----YGKNQHACRS-----PGKSMADLSAE 310 (322)
T ss_pred HHHHHHHHHhCCE--EEecCC-cHHHHHHHhCCCEEEEECCCCcccccC-----CCCCceeecC-----CCcccccCCHH
Confidence 3443 48888888 998765 668889999999998722122211110 0111111000 00233478999
Q ss_pred HHHHHHHHHhc
Q 045029 433 VIERGIRCLME 443 (485)
Q Consensus 433 ~l~~av~~vl~ 443 (485)
++.++++++|+
T Consensus 311 ~V~~~~~~~l~ 321 (322)
T PRK10964 311 TVFQKLETLIS 321 (322)
T ss_pred HHHHHHHHHhh
Confidence 99999988875
No 227
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=35.69 E-value=2e+02 Score=28.85 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=30.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLV-DRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~ 43 (485)
=+++...|+.|=..-.+.+|..++ ..|+. |-|++.+.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~--v~~fSlEm 233 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKP--VLFFSLEM 233 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCc--EEEEECCC
Confidence 467788889999999999998887 67887 66888764
No 228
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=35.52 E-value=1.6e+02 Score=28.71 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=58.0
Q ss_pred CcEEEEeecCcc---cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhc-CCc-ceEe
Q 045029 278 SSVVFLCFGSWG---SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTA-NIG-KVIG 352 (485)
Q Consensus 278 ~~~vyvs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~-~v~~ 352 (485)
++.|.+.-|+.. ..+.+.+.++++.|.+.+.++++..+.+.. +...-+...+... .++ -+.+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~-------------e~~~~~~i~~~~~~~~~~~l~g 249 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD-------------DLACVNEIAQGCQTPPVTALAG 249 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH-------------HHHHHHHHHHhcCCCccccccC
Confidence 457777877753 447788999999998778887766443310 0000011111111 111 1222
Q ss_pred e--cch-hhhhccCCccccccccCchhhHHHHhhCCcEeec
Q 045029 353 W--APQ-IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390 (485)
Q Consensus 353 ~--~pq-~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~ 390 (485)
- +.+ .+++.++++ ||+.-. |-+.=|.+.|+|+|++
T Consensus 250 ~~sL~el~ali~~a~l--~v~nDS-Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 250 KTTFPELGALIDHAQL--FIGVDS-APAHIAAAVNTPLICL 287 (352)
T ss_pred CCCHHHHHHHHHhCCE--EEecCC-HHHHHHHHcCCCEEEE
Confidence 2 333 348888888 998754 5678888999999876
No 229
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=35.50 E-value=39 Score=31.91 Aligned_cols=75 Identities=15% Similarity=0.292 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhhhhccCCcccccc
Q 045029 291 FGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFVS 370 (485)
Q Consensus 291 ~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~it 370 (485)
.+.+...++.+|++...++.||.++++. +-.++.++++...+-.||+. ||=
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGy---------------------------g~~rlL~~ld~~~i~~~pK~--~iG 96 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGY---------------------------GANRLLPYLDYDAIRKNPKI--FIG 96 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS----------------------------GGGGGGGCHHHHHHHSG-E--EEE
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeeccc---------------------------cHHHHHhcccccccccCCCE--EEE
Confidence 3556688899999999999999998763 12356677777777777777 776
Q ss_pred ccCchhhHHHHhh--CCcEeeccccc
Q 045029 371 HCGWNSTLESIWF--GVPIATWPMYA 394 (485)
Q Consensus 371 HgG~~s~~eal~~--GvP~v~~P~~~ 394 (485)
..-..+++-+++. |.+.+--|+..
T Consensus 97 ySDiTaL~~al~~~~g~~t~hGp~~~ 122 (284)
T PF02016_consen 97 YSDITALHNALYAKTGLVTFHGPMLS 122 (284)
T ss_dssp -GGGHHHHHHHHHHHTBEEEES--HH
T ss_pred ecchHHHHHHHHHhCCCeEEEcchhh
Confidence 6666666666543 77777777653
No 230
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.89 E-value=73 Score=28.16 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLP 71 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 71 (485)
+.++++.+.++--|-....-++..|..+|.+ |+++.... ..+.+++.+. ..+.+++.++
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~--vi~LG~~v----p~e~~v~~~~----~~~pd~v~lS 142 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFD--VIDLGRDV----PIDTVVEKVK----KEKPLMLTGS 142 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcE--EEECCCCC----CHHHHHHHHH----HcCCCEEEEc
Confidence 4689999999999999999999999999988 66776542 2346666665 3344444443
No 231
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=34.59 E-value=3e+02 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=24.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEc
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIM 41 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (485)
+||+|+..+.. .-+..+.++|.+++|++.+..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 47888866544 556777889999999855444443
No 232
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.29 E-value=2.2e+02 Score=22.10 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=47.6
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCChHhHHHHHHHhhh
Q 045029 15 GHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPPKRFFGHFVESKK 94 (485)
Q Consensus 15 GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (485)
++-.=++.+++.|.+.|.+ +++++ ..+.+.. ..|+.+..+.... . ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~----l~aT~-----gT~~~l~-------~~gi~~~~v~~~~---~--------------~~ 56 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFK----LVATE-----GTAKYLQ-------EAGIPVEVVNKVS---E--------------GR 56 (110)
T ss_pred CcHhHHHHHHHHHHHCCCE----EEEch-----HHHHHHH-------HcCCeEEEEeecC---C--------------Cc
Confidence 4556788999999999966 55555 2223333 2355543332211 0 11
Q ss_pred hhHHHHHHhhhhcCCCCCCccEEEECCC-------chhHHHHHHHcCCCeEE
Q 045029 95 PHVKEVVANLTDESPDSPRLAGFVLDMF-------CTCMIEVADEFKVPSYL 139 (485)
Q Consensus 95 ~~~~~~l~~l~~~~~~~~~~D~vI~D~~-------~~~~~~~A~~lgiP~v~ 139 (485)
+. +.+++++ .++|+||.-+. ..+....|-.+|||++.
T Consensus 57 ~~----i~~~i~~----~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PN----IVDLIKN----GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hh----HHHHHHc----CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12 2222232 48899997432 23455778899999874
No 233
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=34.21 E-value=9.9 Score=35.69 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=28.2
Q ss_pred ccCchhhHHHH--hhCCcEeeccccccchhhHHHHHHhhcee
Q 045029 371 HCGWNSTLESI--WFGVPIATWPMYAEQQFNAFELVVELGLA 410 (485)
Q Consensus 371 HgG~~s~~eal--~~GvP~v~~P~~~DQ~~na~r~~~~~g~G 410 (485)
=||||++..-+ .+|+-+.++-...+|...|++-++..|+.
T Consensus 70 GcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 70 GCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp S-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred CCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 69999877643 35999999999999999998666655754
No 234
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.96 E-value=4.1e+02 Score=26.85 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=20.9
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEE
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLF 140 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 140 (485)
.+||++|.... ...+|+++|||++.+
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 38999998763 567899999998754
No 235
>PHA02542 41 41 helicase; Provisional
Probab=33.76 E-value=1.1e+02 Score=31.35 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|=..-.+.+|...+..|+. |-+++-+.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~--Vl~fSLEM 228 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYN--VLYISMEM 228 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCc--EEEEeccC
Confidence 36778888999999999999999988988 55776653
No 236
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=33.70 E-value=96 Score=30.05 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=61.2
Q ss_pred CcceE-eecc---hhhhhccCCccccccc--cCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeEEeeeccccc
Q 045029 347 IGKVI-GWAP---QIAVLAHPAIGGFVSH--CGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRND 420 (485)
Q Consensus 347 ~~~v~-~~~p---q~~vL~h~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~ 420 (485)
++.+. +++| +..+|..|+++.|.+. =|.|++.-.|+.|+|++.- -+=++|-.. .+. |+=+-...+
T Consensus 246 ~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l-~~~-~ipVlf~~d---- 316 (360)
T PF07429_consen 246 NFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDL-KEQ-GIPVLFYGD---- 316 (360)
T ss_pred ceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHH-HhC-CCeEEeccc----
Confidence 45443 6776 5669999999888875 5899999999999999876 555666543 554 776654433
Q ss_pred ccccCCcccCHHHHHHHHHHHhcCC
Q 045029 421 IMIENPTVVNAEVIERGIRCLMEHN 445 (485)
Q Consensus 421 ~~~~~~~~~~~~~l~~av~~vl~~~ 445 (485)
.++...|.++=+++.+-|
T Consensus 317 -------~L~~~~v~ea~rql~~~d 334 (360)
T PF07429_consen 317 -------ELDEALVREAQRQLANVD 334 (360)
T ss_pred -------cCCHHHHHHHHHHHhhCc
Confidence 789999999888776533
No 237
>PRK14099 glycogen synthase; Provisional
Probab=33.69 E-value=67 Score=33.02 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=41.2
Q ss_pred cCCcccccc---ccCch-hhHHHHhhCCcEeeccccc--cchhhHHHH---HHhhceeEEeeecccccccccCCcccCHH
Q 045029 362 HPAIGGFVS---HCGWN-STLESIWFGVPIATWPMYA--EQQFNAFEL---VVELGLAVEIKMDYRNDIMIENPTVVNAE 432 (485)
Q Consensus 362 h~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~r~---~~~~g~G~~l~~~~~~~~~~~~~~~~~~~ 432 (485)
.+++ |+. +=|.| +.+||+++|+|.|+....+ |-....... +.. +.|+.++ .-+.+
T Consensus 369 ~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~-------------~~d~~ 432 (485)
T PRK14099 369 GADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFS-------------PVTAD 432 (485)
T ss_pred cCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeC-------------CCCHH
Confidence 3555 664 33433 6789999997766665433 322111000 111 4677665 34789
Q ss_pred HHHHHHHH---HhcCChHHHH
Q 045029 433 VIERGIRC---LMEHNSEMRK 450 (485)
Q Consensus 433 ~l~~av~~---vl~~~~~~r~ 450 (485)
+++++|.+ +++ |++.++
T Consensus 433 ~La~ai~~a~~l~~-d~~~~~ 452 (485)
T PRK14099 433 ALAAALRKTAALFA-DPVAWR 452 (485)
T ss_pred HHHHHHHHHHHHhc-CHHHHH
Confidence 99999987 555 554443
No 238
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=33.60 E-value=70 Score=30.00 Aligned_cols=46 Identities=30% Similarity=0.702 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhhhcCCCCCCccEEEECCCchh-----HHHHHHHcCCCeEEEec
Q 045029 94 KPHVKEVVANLTDESPDSPRLAGFVLDMFCTC-----MIEVADEFKVPSYLFFT 142 (485)
Q Consensus 94 ~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~-----~~~~A~~lgiP~v~~~~ 142 (485)
.+.++++++++++. ..+.-+||.|.|.-. .+.+|.+.+||++++.-
T Consensus 132 ~p~IKE~vR~~I~~---A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQ---AQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CCCHHHHHHHHHHH---hcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEec
Confidence 45778888888775 578889999998532 45788899999888643
No 239
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.36 E-value=2.4e+02 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=31.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
-|+|+-.-+.|-..-.-.||+.|.+.|+. |-++...
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~--VllaA~D 176 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKS--VLLAAGD 176 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCe--EEEEecc
Confidence 57888888999999999999999999988 5577665
No 240
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=32.85 E-value=3.1e+02 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC
Q 045029 7 VFIPSPGAGHLVSTVEVARLLVDR 30 (485)
Q Consensus 7 ~~~~~~~~GH~~P~l~La~~L~~r 30 (485)
.++-.|+.||.-=|++|.+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 455578999999999999999876
No 241
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=32.77 E-value=68 Score=22.04 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=32.3
Q ss_pred CCcccCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 045029 425 NPTVVNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDD 479 (485)
Q Consensus 425 ~~~~~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~ 479 (485)
.+|.++.+++...++.+.. ....+....+.+.+-+..+..++..-+.++|++-
T Consensus 13 ~~G~i~~~el~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGR--DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTS--HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 3469999999999988875 2113333333333333456666666677777653
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=32.69 E-value=78 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=32.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
..++++-.|+.|-..=..+++.+|..+|+. |+|++.+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~s--v~f~~~~ 142 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGIS--VLFITAP 142 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCe--EEEEEHH
Confidence 468888889999999999999999988977 7798866
No 243
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=32.63 E-value=3.1e+02 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeE-EEEEEc
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLS-VTVLIM 41 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~ 41 (485)
-|-+++.++.|-....+.+|-+.+.+|+.|. |.|+-+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg 41 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG 41 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC
Confidence 5778888899999999999999999998866 334543
No 244
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=32.43 E-value=90 Score=27.72 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+.+|.+-..|+.|-.+-|++=|+.|.++|-+|.|-++-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4589999999999999999999999999999777676544
No 245
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=32.39 E-value=58 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=21.1
Q ss_pred ccccccccCc------hhhHHHHhhCCcEeecc
Q 045029 365 IGGFVSHCGW------NSTLESIWFGVPIATWP 391 (485)
Q Consensus 365 ~~~~itHgG~------~s~~eal~~GvP~v~~P 391 (485)
.+++++|.|- +++.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3447777774 47889999999999995
No 246
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.31 E-value=2.1e+02 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 045029 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVL 39 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~ 39 (485)
++.||+++-.++.| -.+|+.|+..|+. .++++
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg-~i~lv 54 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIG-KLTIA 54 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCC-EEEEE
Confidence 45689999888776 5889999999963 25565
No 247
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.23 E-value=3.1e+02 Score=23.18 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=29.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+++.-.++.|-......++..|+++|.. |.++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~--v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKK--VLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCc--EEEEEcC
Confidence 6777888999999999999999999977 5577655
No 248
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.05 E-value=67 Score=27.78 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=20.1
Q ss_pred CccEEEECCCchh--HHHHHHHcCCCeEEEe
Q 045029 113 RLAGFVLDMFCTC--MIEVADEFKVPSYLFF 141 (485)
Q Consensus 113 ~~D~vI~D~~~~~--~~~~A~~lgiP~v~~~ 141 (485)
+||+||....... ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999997653322 4455578999987764
No 249
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.00 E-value=99 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEc
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIM 41 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (485)
.+|+++..++ --=-=-+.+|++|+++|++|.|.++..
T Consensus 26 ~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 26 PRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp -EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEEEec
Confidence 4566665553 111124688999999998866533443
No 250
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=31.57 E-value=4.6e+02 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
..|+++..++.|=..-...||..|+.+|+. |.++..+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~--V~Li~~D 151 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKK--VLLAAGD 151 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCe--EEEEecC
Confidence 357778888999999999999999999988 5577655
No 251
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.15 E-value=61 Score=28.01 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=28.5
Q ss_pred hHHHHHHhhhhcCCCCCCccEEEECCCchhHHHHHHHcCCCeEEEechhH
Q 045029 96 HVKEVVANLTDESPDSPRLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGA 145 (485)
Q Consensus 96 ~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (485)
.++..++++.+. ++|+||.+. .+..+|+++|+|++.+.++.-
T Consensus 113 e~~~~i~~~~~~-----G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 113 EIEAAIKQAKAE-----GVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHT-----T--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHc-----CCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 455667777665 899999886 347899999999888766443
No 252
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.15 E-value=2e+02 Score=27.89 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=56.9
Q ss_pred CCcEEEEeecCc--c--cCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhc----CCc
Q 045029 277 ESSVVFLCFGSW--G--SFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTA----NIG 348 (485)
Q Consensus 277 ~~~~vyvs~GS~--~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~~~ 348 (485)
.++.|.+.-|+. . .-+.+.+.++++.|...+.++++. |+.. |. ..-+...+... .++
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~---------e~-----~~~~~i~~~~~~~~~~~~ 243 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK---------DH-----EAGNEILAALNTEQQAWC 243 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH---------hH-----HHHHHHHHhcccccccce
Confidence 346888888874 2 447788899999887777887765 4321 10 00011111111 111
Q ss_pred -ceEee--cch-hhhhccCCccccccccCchhhHHHHhhCCcEeec
Q 045029 349 -KVIGW--APQ-IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATW 390 (485)
Q Consensus 349 -~v~~~--~pq-~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~ 390 (485)
-+.+- +.+ .+++.++++ ||+.- .|-+.=|.+.|+|+|++
T Consensus 244 ~~l~g~~sL~el~ali~~a~l--~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKA--IVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCE--EEecC-ChHHHHHHHhCCCEEEE
Confidence 11222 333 348888888 99764 46688899999999976
No 253
>PRK08760 replicative DNA helicase; Provisional
Probab=30.53 E-value=61 Score=33.20 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|-..-.+.+|...+. .|+. |-|++-+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~--V~~fSlEM 268 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKG--VAVFSMEM 268 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCc--eEEEeccC
Confidence 4677888899999999999998875 4877 55777663
No 254
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=30.46 E-value=2.2e+02 Score=29.99 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh-cCCcceEeecchhh-----------hhccC
Q 045029 296 VKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT-ANIGKVIGWAPQIA-----------VLAHP 363 (485)
Q Consensus 296 ~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~v~~~~pq~~-----------vL~h~ 363 (485)
.+.+++.|++.|++.|+.+.+.. .+ .|.+.. ..++..+. ..|+. +-..
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~----------------~~--~l~~al~~~~i~~i~-~~hE~~A~~~A~gyar~tg~- 78 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGA----------------VL--PLYDALYDCGIPHIL-TRHEQGAIHAAEGYARISGK- 78 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcc----------------hH--HHHHHHHhcCCcEEE-eCCHHHHHHHHHHHHHHhCC-
Confidence 45688888888888887765541 01 122111 12233332 12221 2233
Q ss_pred CccccccccCch------hhHHHHhhCCcEeecc
Q 045029 364 AIGGFVSHCGWN------STLESIWFGVPIATWP 391 (485)
Q Consensus 364 ~~~~~itHgG~~------s~~eal~~GvP~v~~P 391 (485)
.+++++|.|-| ++.+|...++|+|++-
T Consensus 79 -~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 -PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred -CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44599998865 6889999999999984
No 255
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.68 E-value=2.9e+02 Score=27.63 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=20.9
Q ss_pred CCccEEEECCCchh------H----HHHHHHcCCCeEEEe
Q 045029 112 PRLAGFVLDMFCTC------M----IEVADEFKVPSYLFF 141 (485)
Q Consensus 112 ~~~D~vI~D~~~~~------~----~~~A~~lgiP~v~~~ 141 (485)
.+||++|+-+.+-. + ..+.+++|||.+.-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 49999999885422 1 235577999988743
No 256
>PRK09165 replicative DNA helicase; Provisional
Probab=29.57 E-value=4.7e+02 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=28.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC---------------CCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDR---------------DDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~r---------------GH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|-..-.+.+|...+.+ |.. |.+++.+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~--vl~fSlEM 270 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGV--VGFFSLEM 270 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCe--EEEEeCcC
Confidence 36778888999999999999988754 555 66887763
No 257
>PF14165 YtzH: YtzH-like protein
Probab=29.27 E-value=1.6e+02 Score=22.03 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCC
Q 045029 431 AEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGG 467 (485)
Q Consensus 431 ~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg 467 (485)
.++|.+.|+.+|. |+..-..++.+=..+-+....|-
T Consensus 28 cEQieRLvksLm~-n~~i~~~ik~~L~~Iy~ysq~G~ 63 (87)
T PF14165_consen 28 CEQIERLVKSLMA-NPNIDADIKQTLEEIYSYSQNGK 63 (87)
T ss_pred HHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHccCc
Confidence 4789999999998 66566666666666666655543
No 258
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.24 E-value=96 Score=27.64 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.||++.-.|+ ...+=.+.+.+.|.+.||+ |+++.++
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~--V~vi~T~ 39 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYE--VHLVISK 39 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCE--EEEEECh
Confidence 3666665554 4447889999999999999 5577666
No 259
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.03 E-value=2.1e+02 Score=27.22 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=52.3
Q ss_pred hhhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhh
Q 045029 265 KADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRT 344 (485)
Q Consensus 265 ~~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 344 (485)
..++.....+..-.++-.-........+...+..+.++++++|+++++-+|...... .+..
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~-------------~~~~------ 175 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA-------------GLEK------ 175 (293)
T ss_pred HHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-------------cccc------
Confidence 456666666543222333223333344555578899999999999999776542100 0000
Q ss_pred cCCcceEeecchhhhhccCCccccccccC--chhhHHH
Q 045029 345 ANIGKVIGWAPQIAVLAHPAIGGFVSHCG--WNSTLES 380 (485)
Q Consensus 345 ~~~~~v~~~~pq~~vL~h~~~~~~itHgG--~~s~~ea 380 (485)
.....+.=..-...+|+++.++.|+| +.=..|+
T Consensus 176 ---~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 176 ---GHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ---CCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 00111222333566889999999999 4444444
No 260
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.99 E-value=93 Score=29.04 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=22.1
Q ss_pred cccccccCchhhHHHHh------hCCcEeecc
Q 045029 366 GGFVSHCGWNSTLESIW------FGVPIATWP 391 (485)
Q Consensus 366 ~~~itHgG~~s~~eal~------~GvP~v~~P 391 (485)
.++|+-||=||++.++. .++|++++-
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 44999999999999976 488988875
No 261
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=28.96 E-value=1.1e+02 Score=27.74 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=30.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVL 39 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~ 39 (485)
-|+|...|..|--.-...|.++|+++||.-+|+++
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii 37 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRII 37 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe
Confidence 48899999999999999999999999987555554
No 262
>PRK14974 cell division protein FtsY; Provisional
Probab=28.95 E-value=4.4e+02 Score=25.62 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=30.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.|+|+..++.|-..-...||..|..+|+. |.++++.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~--V~li~~D 177 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFS--VVIAAGD 177 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCe--EEEecCC
Confidence 57888888999999999999999999987 5566554
No 263
>PRK09620 hypothetical protein; Provisional
Probab=28.84 E-value=78 Score=28.79 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCCeEEEEEEcC
Q 045029 1 MKKAQLVFIPSPGAGHLVS------------TVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P------------~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
|+..+|++...|++=.+.| -..||++|.++|++ |+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~--V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAH--VIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCe--EEEEeCC
Confidence 5666788776665444333 36899999999999 6677543
No 264
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=28.75 E-value=1.2e+02 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCcccCCHHHHHHHHHHHHhc
Q 045029 276 PESSVVFLCFGSWGSFGEDQVKEIACALEQS 306 (485)
Q Consensus 276 ~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~ 306 (485)
+.+..+|+++||......+.+...++.|.+.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3445899999997655556677777777664
No 265
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.67 E-value=1.8e+02 Score=27.42 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=59.8
Q ss_pred hhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhc
Q 045029 266 ADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTA 345 (485)
Q Consensus 266 ~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 345 (485)
++..++|.+.+ .++++++|+.. -....+...|.+.|.++....+..
T Consensus 121 ~~av~~L~~A~--rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~---------------------------- 166 (281)
T COG1737 121 ERAVELLAKAR--RIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTH---------------------------- 166 (281)
T ss_pred HHHHHHHHcCC--eEEEEEechhH----HHHHHHHHHHHHcCCceeEecchH----------------------------
Confidence 34455665543 37777777733 334556677777888876543211
Q ss_pred CCcceEeecchhhhhccCCccccccccCch-----hhHHHHhhCCcEeeccccccchh
Q 045029 346 NIGKVIGWAPQIAVLAHPAIGGFVSHCGWN-----STLESIWFGVPIATWPMYAEQQF 398 (485)
Q Consensus 346 ~~~~v~~~~pq~~vL~h~~~~~~itHgG~~-----s~~eal~~GvP~v~~P~~~DQ~~ 398 (485)
. .+ -+...+..-++-++|+|.|.. .+..|-..|+|+|++--..+-+.
T Consensus 167 ---~--~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 167 ---G--QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred ---H--HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 0 12 266677777888899999976 45556789999999965555444
No 266
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.62 E-value=2.6e+02 Score=29.55 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.4
Q ss_pred ccccccccCc------hhhHHHHhhCCcEeecc
Q 045029 365 IGGFVSHCGW------NSTLESIWFGVPIATWP 391 (485)
Q Consensus 365 ~~~~itHgG~------~s~~eal~~GvP~v~~P 391 (485)
.+++++|.|- +++.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458999884 48899999999999984
No 267
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.52 E-value=2.6e+02 Score=26.59 Aligned_cols=38 Identities=5% Similarity=0.201 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||+++-...-|++.-...+.+.|+++=.+.+||+++.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~ 38 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEE 38 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 58899999999999999999999998445558899876
No 268
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=28.46 E-value=4.4e+02 Score=23.71 Aligned_cols=37 Identities=11% Similarity=0.328 Sum_probs=29.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDR-DDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~ 43 (485)
-+++...|+.|=..-.++++..++.. |+. |.+++.+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~--vly~s~E~ 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKP--VLFFSLEM 52 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCc--eEEEeCCC
Confidence 35667777889999999999999887 887 66888764
No 269
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.44 E-value=5.6e+02 Score=25.18 Aligned_cols=128 Identities=15% Similarity=0.062 Sum_probs=74.1
Q ss_pred EEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecc-hhhh
Q 045029 281 VFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAP-QIAV 359 (485)
Q Consensus 281 vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~p-q~~v 359 (485)
++|. |.-...+.+++.++++.+...+.+++-...... ..-|.+|. +.-.+|.. ...+
T Consensus 120 ~~ia-Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kp---------------Rtsp~~f~------g~~~e~l~~L~~~ 177 (360)
T PRK12595 120 SFIF-GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKP---------------RTSPYDFQ------GLGVEGLKILKQV 177 (360)
T ss_pred eeEE-ecccccCHHHHHHHHHHHHHcCCcEEEccccCC---------------CCCCcccc------CCCHHHHHHHHHH
Confidence 3344 554455788899999999999988775432221 11122221 11112222 1223
Q ss_pred hccCCccccccccCchhhHHHHhhCCcEeeccccc-cchhhHHHHHHhhceeEEeeecccccccccCCcc-cCHHHHHHH
Q 045029 360 LAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYA-EQQFNAFELVVELGLAVEIKMDYRNDIMIENPTV-VNAEVIERG 437 (485)
Q Consensus 360 L~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~-DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~-~~~~~l~~a 437 (485)
.....+.++-+=...-++-....+ ++++-+|-+. .|..-...++.. |.=+.+.+. . .|.+++..|
T Consensus 178 ~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~G-----------~~~t~~e~~~A 244 (360)
T PRK12595 178 ADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKRG-----------LSATIEEFIYA 244 (360)
T ss_pred HHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeCC-----------CCCCHHHHHHH
Confidence 334444445555555666666677 8888888553 445555555553 666767653 4 588899999
Q ss_pred HHHHhc
Q 045029 438 IRCLME 443 (485)
Q Consensus 438 v~~vl~ 443 (485)
++.+.+
T Consensus 245 ve~i~~ 250 (360)
T PRK12595 245 AEYIMS 250 (360)
T ss_pred HHHHHH
Confidence 888874
No 270
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.26 E-value=4.7e+02 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEE
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLF 140 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 140 (485)
.++|++|.+.. ...+|+++|||++..
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 38999998874 467899999998754
No 271
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=28.21 E-value=2.5e+02 Score=28.25 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++...|+.|=..-.+.++..++. .|+. |.+++.+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~--vl~~SlEm 234 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKP--VAFFSLEM 234 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCe--EEEEeCcC
Confidence 4677788899999999999999875 5877 66887764
No 272
>PRK05636 replicative DNA helicase; Provisional
Probab=28.20 E-value=1.4e+02 Score=30.95 Aligned_cols=37 Identities=11% Similarity=0.312 Sum_probs=28.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|-..-.+.+|...+. .|.. |.+++.+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~--v~~fSlEM 304 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKA--SVIFSLEM 304 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEEeeC
Confidence 3577888899999999999988764 5655 55777663
No 273
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.78 E-value=1.1e+02 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=25.4
Q ss_pred cEEEEeecCcccCCHHHHHHHHHHHHh--cCCceEEEE
Q 045029 279 SVVFLCFGSWGSFGEDQVKEIACALEQ--SGHRFLWSL 314 (485)
Q Consensus 279 ~~vyvs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~ 314 (485)
.++.++|||......+.+..+.+.+++ .+..+-|.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 489999999766444567788888864 344666654
No 274
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.71 E-value=4.7e+02 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.+++++..++.|-..-+..|+..+..+|+. |.+++..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~--v~~i~~D 112 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKT--VGFITTD 112 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCe--EEEEecC
Confidence 478888888889888888899999888877 5577654
No 275
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.58 E-value=1.5e+02 Score=26.21 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.7
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEEe
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLFF 141 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 141 (485)
....+||+|.-...+..-|++.|||++++.
T Consensus 28 a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 28 AEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred cEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 368889999888889999999999987753
No 276
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=27.55 E-value=37 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||.++-.|..|+ ++|..|+++||+ |++.+.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~--V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHE--VTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEE--EEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCE--EEEEecc
Confidence 477777777766 899999999999 7788654
No 277
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=27.52 E-value=2.7e+02 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeE
Q 045029 9 IPSPGAGHLVSTVEVARLLVDRDDRLS 35 (485)
Q Consensus 9 ~~~~~~GH~~P~l~La~~L~~rGH~v~ 35 (485)
-+..+.|-..-.+.|.+.|++||++|+
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 345578999999999999999999966
No 278
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=27.42 E-value=1.3e+02 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 9 IPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 9 ~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
++.|+.|-.--.+.||+.|++||-. +-+++
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~--~gvvS 84 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVR--VGVVS 84 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCe--eEEEe
Confidence 5778999999999999999999955 55664
No 279
>PRK07952 DNA replication protein DnaC; Validated
Probab=27.23 E-value=2.6e+02 Score=25.70 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
-+++...++.|=..-..++|.+|.++|+. |.+++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~--v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKS--VLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCe--EEEEE
Confidence 35666666777777777888888777766 44553
No 280
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=27.18 E-value=4.1e+02 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEc
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIM 41 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (485)
.+|.+.-.|+.|--.-.-+|++.|.++||.|.|-.+-|
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 37888999999999999999999999999977544433
No 281
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=27.15 E-value=79 Score=27.73 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=28.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
||++.-.|+.|=+.-.+.+.++|.++|++ |+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~--V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAE--VTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCE--EEEEEch
Confidence 57777777777777777999999999999 5566555
No 282
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.95 E-value=3.1e+02 Score=25.11 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECC
Q 045029 17 LVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLP 71 (485)
Q Consensus 17 ~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 71 (485)
+.|..++...|++.|-+ +|.+++|- ... .+....+-++ ..|+++..+.
T Consensus 105 tt~~~A~~~AL~alg~~-RIalvTPY-~~~-v~~~~~~~l~----~~G~eV~~~~ 152 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVR-RISLLTPY-TPE-TSRPMAQYFA----VRGFEIVNFT 152 (239)
T ss_pred eCHHHHHHHHHHHcCCC-EEEEECCC-cHH-HHHHHHHHHH----hCCcEEeeee
Confidence 46777888888888732 26666542 221 1222333333 4577766553
No 283
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=26.92 E-value=1.4e+02 Score=29.40 Aligned_cols=77 Identities=25% Similarity=0.367 Sum_probs=50.8
Q ss_pred hhhhccCCccccccccCchhhHHHHhhCCcEeeccccccchhhHHHHHHhhcee-EEeeecccccccccCCcccCHHHHH
Q 045029 357 IAVLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLA-VEIKMDYRNDIMIENPTVVNAEVIE 435 (485)
Q Consensus 357 ~~vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G-~~l~~~~~~~~~~~~~~~~~~~~l~ 435 (485)
..+++++.+ +|. .=+-|+.-|++.|+|.+++-+ |+.+. .+.+.+|+- ..++.. .++.+.+.
T Consensus 280 ~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y---~~K~~-~l~~~~gl~~~~~~i~-----------~~~~~~l~ 341 (385)
T COG2327 280 GGILAACDL--IVG-MRLHSAIMALAFGVPAIAIAY---DPKVR-GLMQDLGLPGFAIDID-----------PLDAEILS 341 (385)
T ss_pred HHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEee---cHHHH-HHHHHcCCCcccccCC-----------CCchHHHH
Confidence 346666666 552 235678889999999999844 45554 334444654 223322 68899999
Q ss_pred HHHHHHhcCChHHHHH
Q 045029 436 RGIRCLMEHNSEMRKR 451 (485)
Q Consensus 436 ~av~~vl~~~~~~r~~ 451 (485)
..+.+.+.+.++.|++
T Consensus 342 ~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 342 AVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHhccHHHHhh
Confidence 9999988866666555
No 284
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=26.56 E-value=1.3e+02 Score=28.01 Aligned_cols=31 Identities=6% Similarity=-0.025 Sum_probs=23.6
Q ss_pred CccEEEECCCc------hhHHHHHHHcCCCeEEEech
Q 045029 113 RLAGFVLDMFC------TCMIEVADEFKVPSYLFFTS 143 (485)
Q Consensus 113 ~~D~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 143 (485)
+||+|++-..+ .-+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 69999975443 23568999999999887654
No 285
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=26.52 E-value=3.3e+02 Score=28.08 Aligned_cols=105 Identities=15% Similarity=0.052 Sum_probs=62.0
Q ss_pred ceEeecchhhh---hccCCcccccc---ccCchhh-HHHHhhCC----cEeeccccccchhhHHHHHHhhceeEEeeecc
Q 045029 349 KVIGWAPQIAV---LAHPAIGGFVS---HCGWNST-LESIWFGV----PIATWPMYAEQQFNAFELVVELGLAVEIKMDY 417 (485)
Q Consensus 349 ~v~~~~pq~~v---L~h~~~~~~it---HgG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~ 417 (485)
++.+.+|+..+ +.-+++ ++. .-|+|-| .|.++++. |+|+--+.+ |+ +.+.-++.++
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVN--- 431 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTN--- 431 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEEC---
Confidence 44577887764 444555 443 4599955 59999987 555543332 11 2234466665
Q ss_pred cccccccCCcccCHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHh
Q 045029 418 RNDIMIENPTVVNAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFL 481 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 481 (485)
..+.++++++|.++|+-. .+-++|.+++.+.+++. ....=.+.|++++.
T Consensus 432 ----------P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 432 ----------PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVS 481 (487)
T ss_pred ----------CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhh
Confidence 468899999999999832 24455555555554432 33344555555553
No 286
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=26.46 E-value=44 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.0
Q ss_pred ccccccCc------hhhHHHHhhCCcEeecc
Q 045029 367 GFVSHCGW------NSTLESIWFGVPIATWP 391 (485)
Q Consensus 367 ~~itHgG~------~s~~eal~~GvP~v~~P 391 (485)
++++|+|- +++.||...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 38888874 47889999999999994
No 287
>PRK07773 replicative DNA helicase; Validated
Probab=26.39 E-value=5.4e+02 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDR-DDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|=..-.+.+|...+.+ |.. |.+++-+.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~--V~~fSlEm 256 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLA--VAIFSLEM 256 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCe--EEEEecCC
Confidence 36778888999999999999998755 555 66887663
No 288
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.23 E-value=4.6e+02 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.101 Sum_probs=23.3
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEEEechhH
Q 045029 113 RLAGFVLDMFCTCMIEVADEFKVPSYLFFTSGA 145 (485)
Q Consensus 113 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 145 (485)
+.+.+|+=.+..-....|+..|+|++--..++.
T Consensus 80 GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tpt 112 (196)
T PF01081_consen 80 GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPT 112 (196)
T ss_dssp T-SEEEESS--HHHHHHHHHHTSEEEEEESSHH
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcccCCcCCHH
Confidence 677788887778888899999999876444443
No 289
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=25.91 E-value=2.5e+02 Score=24.62 Aligned_cols=87 Identities=5% Similarity=-0.017 Sum_probs=45.5
Q ss_pred eccccccchhhHHHHHHhhceeEEeeecccccccc-cCCcccCHHHHH----HHHHHHhcCChHHHHHHHHHHHHHHHh-
Q 045029 389 TWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMI-ENPTVVNAEVIE----RGIRCLMEHNSEMRKRVKEMSEKARKA- 462 (485)
Q Consensus 389 ~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~-~~~~~~~~~~l~----~av~~vl~~~~~~r~~a~~~~~~~~~~- 462 (485)
+.|...||.......-+...+|+....-.++..+. +.=..+..+.|+ +-|+++|. |+.+-+|-+|+.+.+..|
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~-d~~IIRnr~KI~Avi~NA~ 100 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQ-DAGIIRHRGKIQAIIGNAR 100 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhc-CchhHHhHHHHHHHHHHHH
Confidence 35568899988877667778887643110000000 000034555554 56788888 665544444443333322
Q ss_pred -----hhcCCChHHHHHHH
Q 045029 463 -----LSDGGSSFSSMGRL 476 (485)
Q Consensus 463 -----~~~gg~~~~~~~~~ 476 (485)
.+++||-...+=.|
T Consensus 101 ~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 101 AYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHhcCCHHHHHhhc
Confidence 24577755555444
No 290
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=25.89 E-value=1.3e+02 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~ 42 (485)
||++.-.|+-| .+=...|++.|.+ .||+ |.++.++
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~--V~vv~T~ 38 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIE--THLVISQ 38 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCe--EEEEECH
Confidence 57777777666 6668999999999 5999 5577776
No 291
>PRK12342 hypothetical protein; Provisional
Probab=25.31 E-value=1.4e+02 Score=27.65 Aligned_cols=31 Identities=3% Similarity=0.017 Sum_probs=23.4
Q ss_pred CccEEEECCCc------hhHHHHHHHcCCCeEEEech
Q 045029 113 RLAGFVLDMFC------TCMIEVADEFKVPSYLFFTS 143 (485)
Q Consensus 113 ~~D~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 143 (485)
+||+|++-..+ .-+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 69999975443 22578999999999886543
No 292
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.28 E-value=91 Score=29.84 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEc
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIM 41 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (485)
|.++||+++-.|+.|= .+|..|++.||+ |+++.-
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~--V~~~~r 36 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFD--VHFLLR 36 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCe--EEEEEe
Confidence 4577999998887774 577889999999 667764
No 293
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=24.97 E-value=3.4e+02 Score=26.21 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=26.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEc
Q 045029 9 IPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIM 41 (485)
Q Consensus 9 ~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (485)
++.|+.|-.--.+.|++.|.++|+. +.+++-
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~--~~IlSR 73 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYR--PAILSR 73 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCc--eEEEcC
Confidence 5678999999999999999999988 557753
No 294
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=24.93 E-value=1.1e+02 Score=31.35 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=25.2
Q ss_pred ccCc-hhhHHHHhhCCcEeeccccccchhhHHHHHHhhceeE
Q 045029 371 HCGW-NSTLESIWFGVPIATWPMYAEQQFNAFELVVELGLAV 411 (485)
Q Consensus 371 HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~r~~~~~g~G~ 411 (485)
.+|. ......++++.=++++|-..+-...... . .+.+|.
T Consensus 351 ~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~l-E-Ama~G~ 390 (473)
T TIGR02095 351 IIGYDEALAHLIYAGADFILMPSRFEPCGLTQL-Y-AMRYGT 390 (473)
T ss_pred EEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHH-H-HHHCCC
Confidence 3443 4445568899999999987776665533 3 346663
No 295
>PLN02859 glutamine-tRNA ligase
Probab=24.83 E-value=1.3e+02 Score=32.83 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHhh--hcCCChHHHHHHHHHHH
Q 045029 429 VNAEVIERGIRCLMEHNS------EMRKRVKEMSEKARKAL--SDGGSSFSSMGRLIDDF 480 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~~------~~r~~a~~~~~~~~~~~--~~gg~~~~~~~~~~~~~ 480 (485)
+|+++|.++|.++++.+. .|+.|...+-..+++.+ .++..-...+++-+-++
T Consensus 119 VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad~~~~k~~id~~~~~l 178 (788)
T PLN02859 119 VSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYEL 178 (788)
T ss_pred ECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 589999999999997542 56666666666666643 33333333444443333
No 296
>PRK04940 hypothetical protein; Provisional
Probab=24.82 E-value=2e+02 Score=25.06 Aligned_cols=32 Identities=3% Similarity=-0.232 Sum_probs=25.1
Q ss_pred CccEEEECCC-chhHHHHHHHcCCCeEEEechh
Q 045029 113 RLAGFVLDMF-CTCMIEVADEFKVPSYLFFTSG 144 (485)
Q Consensus 113 ~~D~vI~D~~-~~~~~~~A~~lgiP~v~~~~~~ 144 (485)
++.++|-..+ .+|+.-+|+++|+|.|++-|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 4577887766 4788999999999999876544
No 297
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.82 E-value=1.2e+02 Score=28.79 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=22.5
Q ss_pred cCCccccccccCchhhHHHHhh----CCcEeecc
Q 045029 362 HPAIGGFVSHCGWNSTLESIWF----GVPIATWP 391 (485)
Q Consensus 362 h~~~~~~itHgG~~s~~eal~~----GvP~v~~P 391 (485)
.+++ +|+-||=||+++++.. ++|++.+-
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 4555 9999999999999774 67887774
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=24.72 E-value=5.5e+02 Score=26.04 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=30.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.|+|+..++.|=..-...||..|.++|+. |.+++.+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~k--V~lV~~D 132 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLK--VGLVAAD 132 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCe--EEEecCC
Confidence 57788888999999999999999999988 5566655
No 299
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.60 E-value=1.1e+02 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
+++.||++.-.|+.| ..-...+.+.|.+.|++ |.++.++
T Consensus 1 l~~k~IllgiTGSia-a~~~~~ll~~L~~~g~~--V~vv~T~ 39 (390)
T TIGR00521 1 LENKKILLGVTGGIA-AYKTVELVRELVRQGAE--VKVIMTE 39 (390)
T ss_pred CCCCEEEEEEeCHHH-HHHHHHHHHHHHhCCCE--EEEEECH
Confidence 355688888777644 45589999999999998 5577666
No 300
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.40 E-value=6.3e+02 Score=24.11 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred ecCcccC---CHHHHHHHHHHHHhcCCceEEEEcCCC----------------------CCCCCCCCCCCCCCCCCCChh
Q 045029 285 FGSWGSF---GEDQVKEIACALEQSGHRFLWSLRRPP----------------------SKDTFEKPSDYEDPTEVLPEG 339 (485)
Q Consensus 285 ~GS~~~~---~~~~~~~~~~al~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~p~~ 339 (485)
+||.-.. +.+..+++++.|++.+...|..+|++. .++++. .-..--+
T Consensus 66 LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~--------~td~s~G 137 (301)
T TIGR02482 66 LGTARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIP--------GTDYTIG 137 (301)
T ss_pred eccCCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCc--------CcccCcC
Q ss_pred hHhhhcCCcceEeecchhhhhccCCcccccc-----ccCchhhHHHHhhCCcEeecc-ccccchhhHHHHHHh----hce
Q 045029 340 FMDRTANIGKVIGWAPQIAVLAHPAIGGFVS-----HCGWNSTLESIWFGVPIATWP-MYAEQQFNAFELVVE----LGL 409 (485)
Q Consensus 340 ~~~~~~~~~~v~~~~pq~~vL~h~~~~~~it-----HgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~r~~~~----~g~ 409 (485)
|...+..-...++-+ .+..-.|..+ ||- ||||-.+.-+++.|.-++.+| .-.|-...+.++.++ .+.
T Consensus 138 fdTA~~~~~~~i~~i-~~ta~s~~rv--~ivEvMGR~~G~lAl~~~la~gad~iliPE~~~~~~~l~~~i~~r~~~g~~~ 214 (301)
T TIGR02482 138 FDTALNTIIDAVDKI-RDTATSHERA--FVIEVMGRHAGDLALYSGIATGAEIIIIPEFDYDIDELIQRLKEQHEAGKKH 214 (301)
T ss_pred hhHHHHHHHHHHHHH-HHHhhcCCCE--EEEEeCCCCHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHcCCCe
Q ss_pred eEEeeecccccccccCCc--ccCHHHHHHHHHH
Q 045029 410 AVEIKMDYRNDIMIENPT--VVNAEVIERGIRC 440 (485)
Q Consensus 410 G~~l~~~~~~~~~~~~~~--~~~~~~l~~av~~ 440 (485)
++.+-.+ | .-....+++.+++
T Consensus 215 ~iIvvaE----------G~~~~~~~~l~~~l~~ 237 (301)
T TIGR02482 215 SIIIVAE----------GNIVGSAKEVAKKIEE 237 (301)
T ss_pred EEEEEeC----------CCcCCcHHHHHHHHHH
No 301
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.36 E-value=2.4e+02 Score=27.47 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=69.0
Q ss_pred hhHhhhhccCCCCcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCC-C-----------CCCCCCCCCC-
Q 045029 266 ADIMAWLDDQPESSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKD-T-----------FEKPSDYEDP- 332 (485)
Q Consensus 266 ~~l~~~l~~~~~~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~-~-----------~~~~~~~~~~- 332 (485)
++...|+..+ +++.-|-+.......+....+++-|++.+...|.++|++..-. . .++|.-.++.
T Consensus 56 ~~v~~~~~~G---GT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi 132 (347)
T COG0205 56 EDVDDLINRG---GTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDI 132 (347)
T ss_pred cchhHHHhcC---CeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCC
Confidence 3445566554 3666555555555677777899999999999999999874110 0 0111111000
Q ss_pred -CCCCChhhHhhhcCCcceEeecchhhhhccCCccccc-----cccCchhhHHHHhhCCcEeecccc-ccc
Q 045029 333 -TEVLPEGFMDRTANIGKVIGWAPQIAVLAHPAIGGFV-----SHCGWNSTLESIWFGVPIATWPMY-AEQ 396 (485)
Q Consensus 333 -~~~~p~~~~~~~~~~~~v~~~~pq~~vL~h~~~~~~i-----tHgG~~s~~eal~~GvP~v~~P~~-~DQ 396 (485)
.....-+|.....--.-.++-+- +..=.|..+ || -||||-+..-+++.|.=++.+|-. +|+
T Consensus 133 ~~td~tiGfdTA~~~~~eaid~l~-dtassh~r~--~iveVMGR~aG~lAl~aglA~~a~~ilipE~~~~~ 200 (347)
T COG0205 133 SGTDFTIGFDTALETAVEAIDNLR-DTASSHERI--FIVEVMGRHAGWLALAAGLATGADIILIPEEPADL 200 (347)
T ss_pred cccccCccHHHHHHHHHHHHHHHH-HHHhCcCCE--EEEEecCcChhHHHHHHHHhcCCCEEEecCccccc
Confidence 00011122211110001112222 222345555 55 599999999999999999999943 444
No 302
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=24.18 E-value=1.5e+02 Score=28.41 Aligned_cols=28 Identities=4% Similarity=0.137 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHH--HhcCCceEEEEcCCC
Q 045029 290 SFGEDQVKEIACAL--EQSGHRFLWSLRRPP 318 (485)
Q Consensus 290 ~~~~~~~~~~~~al--~~~~~~~l~~~~~~~ 318 (485)
..+.+...++.+++ ... ++.||.++++.
T Consensus 48 gtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGy 77 (305)
T PRK11253 48 GTDGERLADLNSLADLTTP-NTIVLAVRGGY 77 (305)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccEEEEecccC
Confidence 44556688899988 555 99999998874
No 303
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.15 E-value=1.2e+02 Score=28.63 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=22.5
Q ss_pred ccCCccccccccCchhhHHHHh----hCCcEeecc
Q 045029 361 AHPAIGGFVSHCGWNSTLESIW----FGVPIATWP 391 (485)
Q Consensus 361 ~h~~~~~~itHgG~~s~~eal~----~GvP~v~~P 391 (485)
..+++ +|+-||=||++.++. .++|++++-
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe
Confidence 34555 999999999998865 377888774
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.04 E-value=6.8e+02 Score=24.99 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
.++++-..+.|-..-...||..+..+|+. |.+++.+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~--V~lItaD 243 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRT--VGFITTD 243 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCe--EEEEeCC
Confidence 34555556889999999999999999988 5577765
No 305
>PLN02929 NADH kinase
Probab=24.02 E-value=87 Score=29.80 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=43.1
Q ss_pred cCCccccccccCchhhHHHHh---hCCcEeeccccc------cchhhHHHHHHhhceeEEeeecccccccccCCcccCHH
Q 045029 362 HPAIGGFVSHCGWNSTLESIW---FGVPIATWPMYA------EQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAE 432 (485)
Q Consensus 362 h~~~~~~itHgG~~s~~eal~---~GvP~v~~P~~~------DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~ 432 (485)
.+++ +|+-||=||++.|.. .++|++++-..- .++.|.-. +.. -.|.-. .++.+
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~--------------~~~~~ 125 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC--------------AATAE 125 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc--------------cCCHH
Confidence 3455 999999999999854 478999886642 12333311 111 345322 46788
Q ss_pred HHHHHHHHHhcC
Q 045029 433 VIERGIRCLMEH 444 (485)
Q Consensus 433 ~l~~av~~vl~~ 444 (485)
++.+++++++++
T Consensus 126 ~~~~~L~~il~g 137 (301)
T PLN02929 126 DFEQVLDDVLFG 137 (301)
T ss_pred HHHHHHHHHHcC
Confidence 999999999984
No 306
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=24.01 E-value=65 Score=31.89 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC
Q 045029 4 AQLVFIPSPGAGHLVSTVEVARLLVDRDD 32 (485)
Q Consensus 4 ~~i~~~~~~~~GH~~P~l~La~~L~~rGH 32 (485)
--+++|++|..|+=+-+-.+|.+|+++|+
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~Gy 128 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGY 128 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCe
Confidence 35899999999999999999999999995
No 307
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.94 E-value=1.2e+02 Score=30.15 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
|++.||++.-.|+. ...=...+.+.|.++|++ |.++.++
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~--V~vv~T~ 42 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGAD--VRVVMTE 42 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCE--EEEEECH
Confidence 34567888877765 555778999999999999 5566666
No 308
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=23.83 E-value=99 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=24.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcC
Q 045029 6 LVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 6 i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
|++.-.|+-|-+.- ..|.+.|.++|++ |.++.|+
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~--V~vv~T~ 35 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVE--VHLVISD 35 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCE--EEEEECc
Confidence 45555555555554 8999999999999 5577776
No 309
>smart00096 UTG Uteroglobin.
Probab=23.83 E-value=2.4e+02 Score=20.19 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 430 NAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 430 ~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
|.++-...++.--. ++++.+++..+++-.-. +.++. ...+..++++|..
T Consensus 17 t~~~Y~~~l~~y~~-~~~~~ea~~~lK~cvD~-L~~~~--k~~i~~ll~kI~~ 65 (69)
T smart00096 17 TPSSYEASLKQFKP-DPDMLEAGRQLKKLVDT-LPQET--RENILKLTEKIYT 65 (69)
T ss_pred CHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhc-CCHHH--HHHHHHHHHHHHc
Confidence 66778888876655 78899988888887655 33322 2467788887765
No 310
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=23.79 E-value=3.8e+02 Score=22.71 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=25.7
Q ss_pred chhhhhccCCccccccccCchhhHH---HHhhCCcEeeccc
Q 045029 355 PQIAVLAHPAIGGFVSHCGWNSTLE---SIWFGVPIATWPM 392 (485)
Q Consensus 355 pq~~vL~h~~~~~~itHgG~~s~~e---al~~GvP~v~~P~ 392 (485)
+...++...+-..++--||.||+.| ++.+++|+++++.
T Consensus 83 ~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred hHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 4445444433344556789998765 5889999999874
No 311
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=23.57 E-value=3.8e+02 Score=24.28 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCCCCCchhhhhhhhhhccCCCCCeEEEECCCCCCCCCCCCh
Q 045029 3 KAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKLPHDNTVATYTQSLAASNLSSRIKFINLPDDQPDKESTPP 82 (485)
Q Consensus 3 ~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~ 82 (485)
|.-|+++-.|++|-..-.-.|++.|...|++.. ++... +++.... .......| ..|. +
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~--vFn~g--------~yRR~~~--~~~~~~~f------f~p~---n- 69 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTK--VFNVG--------DYRRKLS--GAPQDAEF------FDPD---N- 69 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EE--EEEHH--------HHHHHHH--SS-S-GGG------GSTT-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcc--eeecc--------cceeccc--cccccccc------CCCC---C-
Confidence 456899999999999999999999999998844 67543 6666664 11011110 0010 1
Q ss_pred HhHHHHHHHhhhhhHHHHHHhhhhcCCCCCCccEEEECCCch------hHHHHHHHcCCCeEEEe
Q 045029 83 KRFFGHFVESKKPHVKEVVANLTDESPDSPRLAGFVLDMFCT------CMIEVADEFKVPSYLFF 141 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~------~~~~~A~~lgiP~v~~~ 141 (485)
......--......++++++.|..+ +-++-|.|..-. +........|+..+.+-
T Consensus 70 ~~~~~~R~~~a~~~l~dl~~~l~~~-----~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIE 129 (222)
T PF01591_consen 70 EEAKKLREQIAKEALEDLIEWLQEE-----GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIE 129 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-------SEEEEES---SHHHHHHHHHHHHHTT-EEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-----CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 1111111122334555666656533 557889998632 23456677888765543
No 312
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.51 E-value=59 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE
Q 045029 2 KKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLS 35 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~ 35 (485)
+..+|+++-++++|| +-|.-|++.|.+|.
T Consensus 3 ~~k~IAViGyGsQG~-----a~AlNLrDSG~~V~ 31 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH-----AHALNLRDSGVNVI 31 (165)
T ss_dssp CTSEEEEES-SHHHH-----HHHHHHHHCC-EEE
T ss_pred CCCEEEEECCChHHH-----HHHHHHHhCCCCEE
Confidence 345899999999998 56889999998844
No 313
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=23.45 E-value=81 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=20.1
Q ss_pred EEEeecCcccCCHHHHHHHHHHHHhcCCc
Q 045029 281 VFLCFGSWGSFGEDQVKEIACALEQSGHR 309 (485)
Q Consensus 281 vyvs~GS~~~~~~~~~~~~~~al~~~~~~ 309 (485)
+|+++||......+.++..+..|++....
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~ 29 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVR 29 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcc
Confidence 58999997654556677777777665533
No 314
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=23.31 E-value=2.2e+02 Score=26.04 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=32.7
Q ss_pred ccCHHH---HHHHHHHHhcCChHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHhh
Q 045029 428 VVNAEV---IERGIRCLMEHNSEMRKRVKEMSEKARKALSDGGSSFSSMGRLIDDFLD 482 (485)
Q Consensus 428 ~~~~~~---l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 482 (485)
.+++++ |++|.+.+...+..++++++++.+.+.+. ..+.+|++.+.+
T Consensus 204 gf~~e~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~--------~~v~~~~dFi~~ 253 (260)
T COG1043 204 GFSREEIHALRKAYKLLFRSGLTLREALEEIAEEYADN--------PEVKEFIDFIAS 253 (260)
T ss_pred CCCHHHHHHHHHHHHHHeeCCCCHHHHHHHHHHHhcCC--------hHHHHHHHHHhh
Confidence 466655 57888888885668999999987776443 456666665544
No 315
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=23.12 E-value=3.8e+02 Score=26.31 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhh---hhccCC
Q 045029 290 SFGEDQVKEIACALEQ--SGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIA---VLAHPA 364 (485)
Q Consensus 290 ~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~---vL~h~~ 364 (485)
.-..+.+.+++.-+-+ .+++|+..-.++. +.++++.+.+. ...+++.+.+-+|++. +|..-+
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGPk----------~i~lee~lEk~---~l~~rV~~lG~v~h~~Vr~vl~~G~ 273 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGPK----------RIDLEEMLEKL---FLQDRVVMLGTVPHDRVRDVLVRGD 273 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCcc----------cchHHHHHHHh---hccCceEEecccchHHHHHHHhcCc
Confidence 3355666665554433 4668776533321 11122222222 2347788888898876 566666
Q ss_pred ccccccccC----chhhHHHHhhCCcEeec
Q 045029 365 IGGFVSHCG----WNSTLESIWFGVPIATW 390 (485)
Q Consensus 365 ~~~~itHgG----~~s~~eal~~GvP~v~~ 390 (485)
+ |++-.= .-.+.||.+||.|+|.-
T Consensus 274 I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 274 I--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred E--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6 764432 23678999999999865
No 316
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.04 E-value=2.2e+02 Score=25.08 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=56.5
Q ss_pred EEEEeecCcccCCHHHHH-HHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchhh
Q 045029 280 VVFLCFGSWGSFGEDQVK-EIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQIA 358 (485)
Q Consensus 280 ~vyvs~GS~~~~~~~~~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~~ 358 (485)
..++.-.. ..+.+.+. ++++.++..+..+|...|.- ..|...|.++-+++ +.+
T Consensus 53 t~~~~~k~--~~~r~~~d~~l~~~l~~~~~dlvvLAGyM----------------rIL~~~fl~~~~gr--IlN------ 106 (200)
T COG0299 53 TVVLDRKE--FPSREAFDRALVEALDEYGPDLVVLAGYM----------------RILGPEFLSRFEGR--ILN------ 106 (200)
T ss_pred EEEecccc--CCCHHHHHHHHHHHHHhcCCCEEEEcchH----------------HHcCHHHHHHhhcc--eEe------
Confidence 44444333 33555544 59999999999988776654 33556666554432 221
Q ss_pred hhccCCccccccccCchhhHHHHhhCCcEeeccc
Q 045029 359 VLAHPAIGGFVSHCGWNSTLESIWFGVPIATWPM 392 (485)
Q Consensus 359 vL~h~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 392 (485)
=||++ .=.++|..+..+|+.+|+..-++-.
T Consensus 107 --IHPSL--LP~f~G~h~~~~A~~aG~k~sG~TV 136 (200)
T COG0299 107 --IHPSL--LPAFPGLHAHEQALEAGVKVSGCTV 136 (200)
T ss_pred --cCccc--ccCCCCchHHHHHHHcCCCccCcEE
Confidence 37777 7789999999999999999866653
No 317
>PRK05748 replicative DNA helicase; Provisional
Probab=22.82 E-value=3.8e+02 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.394 Sum_probs=29.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++...|+.|=..-.+.++...+. +|+. |.+++.+.
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~--v~~fSlEm 242 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKN--VAIFSLEM 242 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCe--EEEEeCCC
Confidence 4677888899999999999999874 5877 65887664
No 318
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=22.76 E-value=7.5e+02 Score=24.45 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhc
Q 045029 429 VNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSD 465 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~ 465 (485)
++..+|++.=.+-++ .||+|..+|+..+.+.+..
T Consensus 298 L~~p~Lra~W~~El~---~Mr~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 298 LNNPELRAEWEQELE---EMRQRILEMRQALVDALKA 331 (396)
T ss_pred hCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 344444443333322 6999999999998888766
No 319
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.69 E-value=5.4e+02 Score=22.80 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=48.6
Q ss_pred hhhhccCCccccccccCchhhH-----HHHhhCCcEeec--cccccchhhHHHHHHhhceeEEeeecccccccccCCccc
Q 045029 357 IAVLAHPAIGGFVSHCGWNSTL-----ESIWFGVPIATW--PMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVV 429 (485)
Q Consensus 357 ~~vL~h~~~~~~itHgG~~s~~-----eal~~GvP~v~~--P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~ 429 (485)
...|..+.+ +|..-|...+. +|-..|+|+-++ |-..|=.+=| . .+.-++=+.+.++ +.. ..
T Consensus 64 ~~dl~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa-~-~~~g~l~iaisT~---G~s-----P~ 131 (205)
T TIGR01470 64 ADILEGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPS-I-VDRSPVVVAISSG---GAA-----PV 131 (205)
T ss_pred HHHhCCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEee-E-EEcCCEEEEEECC---CCC-----cH
Confidence 344655555 77777765433 344568888433 3333322222 2 2221333334332 111 33
Q ss_pred CHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHh
Q 045029 430 NAEVIERGIRCLMEHN-SEMRKRVKEMSEKARKA 462 (485)
Q Consensus 430 ~~~~l~~av~~vl~~~-~~~r~~a~~~~~~~~~~ 462 (485)
-+..|++.|++.+..+ ..+.+...++++.+++.
T Consensus 132 la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 132 LARLLRERIETLLPPSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhh
Confidence 4467888888888622 35666666677766654
No 320
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=22.47 E-value=3.5e+02 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.4
Q ss_pred CC-CcEEEEEcCCCccCHHHHHHHHHHHHhCCCC
Q 045029 1 MK-KAQLVFIPSPGAGHLVSTVEVARLLVDRDDR 33 (485)
Q Consensus 1 m~-~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~ 33 (485)
|+ .+||+++-.+++-| +|++.|++-++-
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~ 29 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLL 29 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCC
Confidence 55 46999999999988 799999998854
No 321
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.45 E-value=4.5e+02 Score=27.81 Aligned_cols=144 Identities=15% Similarity=0.253 Sum_probs=77.8
Q ss_pred CcEEEEeecCcccCCHHHHHHHHHHHHhcCCceEEEEcCCCCCCCCCCCCCCCCCCCCCChhhHhhhcCCcceEeecchh
Q 045029 278 SSVVFLCFGSWGSFGEDQVKEIACALEQSGHRFLWSLRRPPSKDTFEKPSDYEDPTEVLPEGFMDRTANIGKVIGWAPQI 357 (485)
Q Consensus 278 ~~~vyvs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~~~pq~ 357 (485)
.+.|-|-+||. .+.....++.+.|+..|+.+-..+-.. ...|+.+. .++-+.
T Consensus 410 ~~~v~i~~gs~--sd~~~~~~~~~~l~~~g~~~~~~v~sa----------------hr~~~~~~----------~~~~~~ 461 (577)
T PLN02948 410 TPLVGIIMGSD--SDLPTMKDAAEILDSFGVPYEVTIVSA----------------HRTPERMF----------SYARSA 461 (577)
T ss_pred CCeEEEEECch--hhHHHHHHHHHHHHHcCCCeEEEEECC----------------ccCHHHHH----------HHHHHH
Confidence 45677778884 466778889999999998876555443 23454332 122111
Q ss_pred hhhccCCccccccccCchhhHHHHh---hCCcEeeccccccc--hhhHH-HHHHhh--ceeEEe-eecccccccccCCcc
Q 045029 358 AVLAHPAIGGFVSHCGWNSTLESIW---FGVPIATWPMYAEQ--QFNAF-ELVVEL--GLAVEI-KMDYRNDIMIENPTV 428 (485)
Q Consensus 358 ~vL~h~~~~~~itHgG~~s~~eal~---~GvP~v~~P~~~DQ--~~na~-r~~~~~--g~G~~l-~~~~~~~~~~~~~~~ 428 (485)
. -...++ ||.=.|.-.-+-++. .-+|+|.+|....- -..+- -+++ + |+.+.. ..+ +.
T Consensus 462 ~-~~~~~v--~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i~----------~~ 527 (577)
T PLN02948 462 H-SRGLQV--IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAIG----------NA 527 (577)
T ss_pred H-HCCCCE--EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEecC----------Ch
Confidence 1 111233 777666543333322 35799999985321 11221 1222 3 433221 111 13
Q ss_pred cCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhc
Q 045029 429 VNAEVIERGIRCLMEHNSEMRKRVKEMSEKARKALSD 465 (485)
Q Consensus 429 ~~~~~l~~av~~vl~~~~~~r~~a~~~~~~~~~~~~~ 465 (485)
.++.-++..|-.+ . |++++++.+..++.+++.+.+
T Consensus 528 ~~aa~~a~~i~~~-~-~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 528 TNAGLLAVRMLGA-S-DPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred HHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHHHh
Confidence 4555555444222 3 578888888888888887654
No 322
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.41 E-value=5.6e+02 Score=22.83 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=21.5
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEE
Q 045029 113 RLAGFVLDMFCTCMIEVADEFKVPSYL 139 (485)
Q Consensus 113 ~~D~vI~D~~~~~~~~~A~~lgiP~v~ 139 (485)
+.+++|+=.+..-....|++.|+|++.
T Consensus 80 GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 677788777777778889999999765
No 323
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.34 E-value=2e+02 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred hhHHHHHHhhhhcCCCCCCccEEEECCCchh---HHHHHHHcCCCeEE
Q 045029 95 PHVKEVVANLTDESPDSPRLAGFVLDMFCTC---MIEVADEFKVPSYL 139 (485)
Q Consensus 95 ~~~~~~l~~l~~~~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~v~ 139 (485)
..++..+++|. +-++.+.|..+.+ +..+|+..|||++.
T Consensus 138 ~aM~~~m~~Lk-------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 138 DAMEKLMEALK-------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH-------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 34555666664 3477888887644 45789999999775
No 324
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=2e+02 Score=26.40 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=23.0
Q ss_pred CccEEE-ECCCc-hhHHHHHHHcCCCeEEEechhH
Q 045029 113 RLAGFV-LDMFC-TCMIEVADEFKVPSYLFFTSGA 145 (485)
Q Consensus 113 ~~D~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 145 (485)
-||+++ .|+.. --++.=|.++|||+|.+.=+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 388766 77764 3456678899999988654433
No 325
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=21.82 E-value=1.6e+02 Score=24.45 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=20.9
Q ss_pred ccccccCc------hhhHHHHhhCCcEeeccc
Q 045029 367 GFVSHCGW------NSTLESIWFGVPIATWPM 392 (485)
Q Consensus 367 ~~itHgG~------~s~~eal~~GvP~v~~P~ 392 (485)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 38888664 478899999999999953
No 326
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=21.79 E-value=6.4e+02 Score=23.26 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (485)
-+++.-.|+.|=..-.++++...+.+|.. +.+++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~--vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNP--VLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCc--EEEEEecC
Confidence 45667778999999999999999889988 55887763
No 327
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.75 E-value=1.2e+02 Score=27.11 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=22.5
Q ss_pred CccEEEECCCc--hhHHHHHHHcCCCeEEEechh
Q 045029 113 RLAGFVLDMFC--TCMIEVADEFKVPSYLFFTSG 144 (485)
Q Consensus 113 ~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 144 (485)
+||+||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 99999977765 445556677899999886654
No 328
>PRK07206 hypothetical protein; Provisional
Probab=21.60 E-value=4.3e+02 Score=26.28 Aligned_cols=25 Identities=4% Similarity=-0.097 Sum_probs=17.6
Q ss_pred CCccEEE--ECCCchhHHHHHHHcCCC
Q 045029 112 PRLAGFV--LDMFCTCMIEVADEFKVP 136 (485)
Q Consensus 112 ~~~D~vI--~D~~~~~~~~~A~~lgiP 136 (485)
.++|.|| +|.....+..+++.+|+|
T Consensus 69 ~~~d~vi~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 69 LGPEAIIAGAESGVELADRLAEILTPQ 95 (416)
T ss_pred cCCCEEEECCCccHHHHHHHHHhcCCC
Confidence 3789898 444444556678889988
No 329
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.45 E-value=6.9e+02 Score=24.91 Aligned_cols=24 Identities=13% Similarity=-0.096 Sum_probs=19.4
Q ss_pred CccEEEECCCchhHHHHHHHcCCCeEE
Q 045029 113 RLAGFVLDMFCTCMIEVADEFKVPSYL 139 (485)
Q Consensus 113 ~~D~vI~D~~~~~~~~~A~~lgiP~v~ 139 (485)
+||++|.... ...+|+++|+|++.
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~ 379 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCD 379 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEE
Confidence 8999998853 35789999999874
No 330
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.43 E-value=2.6e+02 Score=21.30 Aligned_cols=35 Identities=6% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE
Q 045029 1 MKKAQLVFIPSPGAGHLVSTVEVARLLVDRDDRLS 35 (485)
Q Consensus 1 m~~~~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~ 35 (485)
|++.||++++..+.|--.-.-.+=+.+.++|.++.
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~ 35 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK 35 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE
Confidence 56678888888776644444566666778887744
No 331
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=21.36 E-value=2.6e+02 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEcCC
Q 045029 292 GEDQVKEIACALEQSGHRFLWSLRRP 317 (485)
Q Consensus 292 ~~~~~~~~~~al~~~~~~~l~~~~~~ 317 (485)
-+-++++++++|.+.|+.+...+..+
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 34568899999999999987776654
No 332
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.26 E-value=15 Score=20.00 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.8
Q ss_pred CchhhHHHHhhCCcEee
Q 045029 373 GWNSTLESIWFGVPIAT 389 (485)
Q Consensus 373 G~~s~~eal~~GvP~v~ 389 (485)
|.|+++-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888654
No 333
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.26 E-value=1.3e+02 Score=30.74 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCCeEEEEEEcC
Q 045029 2 KKAQLVFIPSPGAGHLVST------------VEVARLLVDRDDRLSVTVLIMK 42 (485)
Q Consensus 2 ~~~~i~~~~~~~~GH~~P~------------l~La~~L~~rGH~v~Vt~~~~~ 42 (485)
++.||++...|++=.+.|. .+||+++..||++ ||+++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~--VtlI~Gp 305 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE--VTLISGP 305 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc--EEEEeCC
Confidence 3458888888887777664 6899999999999 7798866
No 334
>PRK06904 replicative DNA helicase; Validated
Probab=21.25 E-value=4.4e+02 Score=27.00 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=29.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEEcCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVD-RDDRLSVTVLIMKL 43 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~ 43 (485)
=+++..-|+.|-..-.+.+|...+. .|+. |-|++.+.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~--Vl~fSlEM 260 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKP--VLVFSLEM 260 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCe--EEEEeccC
Confidence 3677888999999999999998875 4777 66887763
No 335
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.13 E-value=1.8e+02 Score=27.87 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=38.1
Q ss_pred ccCCccccccccCchhhHHHHhh----CCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHH
Q 045029 361 AHPAIGGFVSHCGWNSTLESIWF----GVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIER 436 (485)
Q Consensus 361 ~h~~~~~~itHgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~ 436 (485)
..+++ +|+=||=||++.+... ++|++++.+. .+|.-. .+..+++.+
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--------------~~~~~~~~~ 120 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--------------EAEAEDLDE 120 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--------------cCCHHHHHH
Confidence 34555 9999999999998764 8898888541 234322 345677888
Q ss_pred HHHHHhcC
Q 045029 437 GIRCLMEH 444 (485)
Q Consensus 437 av~~vl~~ 444 (485)
++++++++
T Consensus 121 ~l~~i~~g 128 (306)
T PRK03372 121 AVERVVDR 128 (306)
T ss_pred HHHHHHcC
Confidence 88888874
No 336
>PRK12377 putative replication protein; Provisional
Probab=20.94 E-value=4.4e+02 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=23.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
.++|.-.++.|=..-..++|++|.+.|+. |.+++
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~--v~~i~ 136 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRS--VIVVT 136 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCC--eEEEE
Confidence 46666666777777777777777777766 43554
No 337
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.88 E-value=1.8e+02 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=22.7
Q ss_pred CccEEE--ECCCc---hh-HHHHHHHcCCCeEEEechhHH
Q 045029 113 RLAGFV--LDMFC---TC-MIEVADEFKVPSYLFFTSGAA 146 (485)
Q Consensus 113 ~~D~vI--~D~~~---~~-~~~~A~~lgiP~v~~~~~~~~ 146 (485)
++|+|| +|... .+ +...|++.++|++.....+..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 567765 66653 22 457889999998877644443
No 338
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.78 E-value=2.3e+02 Score=27.00 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=37.7
Q ss_pred cCCccccccccCchhhHHHHh----hCCcEeeccccccchhhHHHHHHhhceeEEeeecccccccccCCcccCHHHHHHH
Q 045029 362 HPAIGGFVSHCGWNSTLESIW----FGVPIATWPMYAEQQFNAFELVVELGLAVEIKMDYRNDIMIENPTVVNAEVIERG 437 (485)
Q Consensus 362 h~~~~~~itHgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~r~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~l~~a 437 (485)
.+++ +|+=||=||++.+.. .++|++++-.. .+|.-- .++.+++.++
T Consensus 68 ~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~--------------~~~~~~~~~~ 117 (296)
T PRK04539 68 YCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLT--------------QIPREYMTDK 117 (296)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEee--------------ccCHHHHHHH
Confidence 4555 999999999999964 37898887432 133322 3567788888
Q ss_pred HHHHhcC
Q 045029 438 IRCLMEH 444 (485)
Q Consensus 438 v~~vl~~ 444 (485)
+++++++
T Consensus 118 l~~i~~g 124 (296)
T PRK04539 118 LLPVLEG 124 (296)
T ss_pred HHHHHcC
Confidence 8888874
No 339
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.58 E-value=2.2e+02 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.014 Sum_probs=22.5
Q ss_pred CCccEEEECC-C-chhHHHHHHHcCCCeEEE
Q 045029 112 PRLAGFVLDM-F-CTCMIEVADEFKVPSYLF 140 (485)
Q Consensus 112 ~~~D~vI~D~-~-~~~~~~~A~~lgiP~v~~ 140 (485)
.++|.|++=. . .+.+..+|.++|+|++..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 3789998433 3 567889999999998875
No 340
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=20.36 E-value=8.1e+02 Score=24.90 Aligned_cols=26 Identities=8% Similarity=-0.136 Sum_probs=20.0
Q ss_pred CCccEEEECCCchhHHHHHHHcCCCeEEE
Q 045029 112 PRLAGFVLDMFCTCMIEVADEFKVPSYLF 140 (485)
Q Consensus 112 ~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 140 (485)
.+||++|... ....+|+++|||++.+
T Consensus 394 ~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3899999763 3456788999998764
No 341
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=20.26 E-value=1.1e+03 Score=25.49 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEE
Q 045029 1 MKKAQLVFIPS-PGAGHLVSTVEVARLLVDRDDRLSVTVLI 40 (485)
Q Consensus 1 m~~~~i~~~~~-~~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (485)
|.+ .|++.+. +..|=..-.+.|++.|.++|.+ |.++-
T Consensus 1 m~k-~l~I~~T~t~~GKT~vslgL~~~L~~~G~~--Vg~fK 38 (684)
T PRK05632 1 MSR-SIYLAPTGTGVGLTSVSLGLMRALERKGVK--VGFFK 38 (684)
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEeC
Confidence 444 4666644 4688999999999999999987 55764
No 342
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.09 E-value=6.7e+02 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=25.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCC
Q 045029 5 QLVFIPSPGAGHLVSTVEVARLLVDRDDR 33 (485)
Q Consensus 5 ~i~~~~~~~~GH~~P~l~La~~L~~rGH~ 33 (485)
|=+++-++..|--.=+..|++.|.++|..
T Consensus 16 ~AVLllHGFTGt~~Dvr~Lgr~L~e~GyT 44 (243)
T COG1647 16 RAVLLLHGFTGTPRDVRMLGRYLNENGYT 44 (243)
T ss_pred EEEEEEeccCCCcHHHHHHHHHHHHCCce
Confidence 66788888999999999999999999843
No 343
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.09 E-value=1.6e+02 Score=25.37 Aligned_cols=29 Identities=7% Similarity=0.128 Sum_probs=19.8
Q ss_pred CccEEEECCCchh-HHHHHHHcCCCeEEEe
Q 045029 113 RLAGFVLDMFCTC-MIEVADEFKVPSYLFF 141 (485)
Q Consensus 113 ~~D~vI~D~~~~~-~~~~A~~lgiP~v~~~ 141 (485)
+||+||....... ...-.++.|+|++.+.
T Consensus 60 ~PDlii~~~~~~~~~~~~l~~~gi~v~~~~ 89 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKLKDAGIPVVVLP 89 (195)
T ss_pred CCCEEEEcCCcCHHHHHHHHHcCCcEEEeC
Confidence 9999997653322 3445577899987764
Done!