BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045030
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
 pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
           With D- Lactate At The Active Site
          Length = 311

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 238 NSKLLAEVNSLNSSLPQAKIVYVDVYNPLLDLIKNPVKSGFRV 280
           N+KL AE+ ++NS++P   +V V   N  +  +  PV+ G RV
Sbjct: 101 NAKLKAELEAMNSTVP---VVVVGGANDSIPAVTKPVREGDRV 140


>pdb|1W61|A Chain A, Proline Racemase In Complex With 2 Molecules Of Pyrrole-2-
           Carboxylic Acid (Holo Form)
 pdb|1W61|B Chain B, Proline Racemase In Complex With 2 Molecules Of Pyrrole-2-
           Carboxylic Acid (Holo Form)
 pdb|1W62|A Chain A, Proline Racemase In Complex With One Molecule Of
           Pyrrole-2- Carboxylic Acid (hemi Form)
 pdb|1W62|B Chain B, Proline Racemase In Complex With One Molecule Of
           Pyrrole-2- Carboxylic Acid (hemi Form)
          Length = 414

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 231 NRAAQLFNSKLLAEVNSLNSSLPQAKIVY-VDVYNPLLDL---IKNPVKSGFRVPDRSCC 286
             A +L  +++   V   +  LP    V  V++Y P  +     KN V  G R  DRS C
Sbjct: 241 QEAGELLRTEINRSVKVQHPQLPHINTVDCVEIYGPPTNPEANYKNVVIFGNRQADRSPC 300

Query: 287 GTG 289
           GTG
Sbjct: 301 GTG 303


>pdb|3RF7|A Chain A, Crystal Structure Of An Iron-Containing Alcohol
           Dehydrogenase (Sden_2133) From Shewanella Denitrificans
           Os-217 At 2.12 A Resolution
          Length = 375

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 228 DNANRAAQLFNSKLLAEVNSLN--SSLPQAKIVYVDVYNPL-------LDLIKNPVKSGF 278
           D      + FN+KL   V  L   S+   AK V + + NP         DLIKNP     
Sbjct: 96  DELTAQVKAFNTKLPVSVVGLGGGSTXDLAKAVSLXLTNPGSSSEYQGWDLIKNPAVHHI 155

Query: 279 RVPDRSCCGTGLFEAVILC 297
            +P  S  G       +LC
Sbjct: 156 GIPTVSGTGAEASRTAVLC 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,065,077
Number of Sequences: 62578
Number of extensions: 423317
Number of successful extensions: 876
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 11
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)