BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045032
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 114 WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNH 166
           WRKYGQK + G+ YPR YYRC+     GC   K V+RS  D  +   TY G H
Sbjct: 20  WRKYGQKSVKGSPYPRSYYRCS---SPGCPVKKHVERSSHDTKLLITTYEGKH 69


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 114 WRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNH 166
           WRKYGQK + G  YPR YY+CT     GC   K V+R+  DP     TY G H
Sbjct: 23  WRKYGQKVVKGNPYPRSYYKCT---TPGCGVRKHVERAATDPKAVVTTYEGKH 72


>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
           Insights Into Dna Transfer Mechanisms
 pdb|2ZBK|C Chain C, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
           Insights Into Dna Transfer Mechanisms
 pdb|2ZBK|E Chain E, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
           Insights Into Dna Transfer Mechanisms
 pdb|2ZBK|G Chain G, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
           Insights Into Dna Transfer Mechanisms
          Length = 389

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 151 SDEDPTIFEITYRGNHTCAQAS---NAILPPP-TQPETKEPDTAAIEPQ 195
           SDE PTI ++ YRG H+    S   N I+    T  E KE D+  ++ +
Sbjct: 95  SDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIE 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.129    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,902,884
Number of Sequences: 62578
Number of extensions: 364593
Number of successful extensions: 455
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 5
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)