Query 045032
Match_columns 354
No_of_seqs 182 out of 540
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 99.9 8.7E-28 3E-32 190.2 5.8 60 110-172 16-75 (76)
2 1wj2_A Probable WRKY transcrip 99.9 1.3E-27 4.6E-32 189.9 5.9 59 110-171 19-77 (78)
3 2rpr_A Flywch-type zinc finger 63.2 5.5 0.00019 30.8 3.2 35 128-169 38-72 (87)
4 1nvp_D Transcription initiatio 36.6 47 0.0016 27.4 4.9 41 15-63 6-46 (108)
5 1cz6_A Protein (androctonin); 35.8 12 0.00043 23.4 0.9 8 130-137 16-23 (26)
6 1nh2_D Transcription initiatio 33.3 56 0.0019 27.6 4.9 42 14-63 9-50 (121)
7 1x9t_B N-terminl peptide of fi 24.4 27 0.00093 22.3 1.1 12 330-341 10-21 (26)
8 3l1n_A MP1P, cell WALL antigen 16.2 2.4E+02 0.0084 25.0 5.9 49 12-62 145-193 (194)
9 1xiw_B T-cell surface glycopro 13.5 87 0.003 23.9 1.9 45 113-168 21-75 (79)
10 1wrd_A TOM1, target of MYB pro 10.9 6E+02 0.021 20.1 6.4 24 11-34 9-32 (103)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.94 E-value=8.7e-28 Score=190.22 Aligned_cols=60 Identities=43% Similarity=0.898 Sum_probs=56.6
Q ss_pred cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCCCCC
Q 045032 110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQAS 172 (354)
Q Consensus 110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~~~~ 172 (354)
++++|||||||.|+|++|||+|||||+ +||+|+|+|||+++||.+++|||+|+|||..+.
T Consensus 16 DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 16 DGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 478999999999999999999999997 799999999999999999999999999997653
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.94 E-value=1.3e-27 Score=189.94 Aligned_cols=59 Identities=44% Similarity=0.866 Sum_probs=56.3
Q ss_pred cccchhcccccccCCCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCCCC
Q 045032 110 SKKSWRKYGQKDILGAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCAQA 171 (354)
Q Consensus 110 ~kk~WRKYGQK~I~gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~~~ 171 (354)
++++|||||||.|+|++|||+|||||+ +||+|+|+|||+.+||.+++|||+|+|||..|
T Consensus 19 DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 19 DGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 478999999999999999999999998 79999999999999999999999999999765
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=63.18 E-value=5.5 Score=30.77 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=23.8
Q ss_pred CceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecCC
Q 045032 128 PRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTCA 169 (354)
Q Consensus 128 pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc~ 169 (354)
.+.|.+|+.....+|.|+=. ...+ + +.-.+.|||+
T Consensus 38 ~~~yWrC~~~~~~kCrARi~-T~~~-~-----~~~~~~HnH~ 72 (87)
T 2rpr_A 38 EKVYWMCRDQARLGCRSRAI-TQGH-R-----IMVMRSHCHQ 72 (87)
T ss_dssp SCEEEEEGGGTTSCCCCEEE-EETT-E-----EEECSCCSSC
T ss_pred CcEEEEecCCCCCCCCEEEE-EcCC-C-----EECCCCcCCC
Confidence 36899999877779999643 3222 1 3346889984
No 4
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=36.63 E-value=47 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHhHHHHHHHHHHHhcccCCCCchhHHhhHHHHHHHHHHHHHHHHhh
Q 045032 15 NVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63 (354)
Q Consensus 15 ~EL~~GrElA~QL~~~L~~~~~~ss~e~~~e~~Lv~~ILsSf~~ALS~L 63 (354)
+.-.-|..|..-|..++.. +.-++ .|+.+||.-|+++|.-.
T Consensus 6 R~stiG~aL~dtLdEli~~--~~Isp------~la~kVL~~FDksi~~a 46 (108)
T 1nvp_D 6 RNTTLGNSLQESLDELIQS--QQITP------QLALQVLLQFDKAINAA 46 (108)
T ss_dssp GSSHHHHHHHHHHHHHHHT--TSSCH------HHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHc--CCCCH------HHHHHHHHHHHHHHHHH
Confidence 3445689999999988874 32233 49999999999999874
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=35.75 E-value=12 Score=23.38 Aligned_cols=8 Identities=63% Similarity=1.398 Sum_probs=6.9
Q ss_pred eeEEeecc
Q 045032 130 GYYRCTYR 137 (354)
Q Consensus 130 sYYrCt~~ 137 (354)
.||+||++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999975
No 6
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=33.29 E-value=56 Score=27.60 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHHHHHhcccCCCCchhHHhhHHHHHHHHHHHHHHHHhh
Q 045032 14 INVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSML 63 (354)
Q Consensus 14 i~EL~~GrElA~QL~~~L~~~~~~ss~e~~~e~~Lv~~ILsSf~~ALS~L 63 (354)
.+...-|..|..-|..++.. +.-++ .|+.+||.-|+++|.-.
T Consensus 9 YR~StiG~aL~dtLdEli~~--~~Isp------~la~kVL~~FDksi~~a 50 (121)
T 1nh2_D 9 YRRSTIGNSLVDALDTLISD--GRIEA------SLAMRVLETFDKVVAET 50 (121)
T ss_dssp GGGSHHHHHHHHHHHHHHHT--TSSCH------HHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHHHHc--CCCCH------HHHHHHHHHHHHHHHHH
Confidence 34456699999999998874 32233 49999999999999874
No 7
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=24.38 E-value=27 Score=22.30 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.7
Q ss_pred ccCCCCcCCCCC
Q 045032 330 EFDPNFTFDNLG 341 (354)
Q Consensus 330 ~fdp~f~f~~~~ 341 (354)
+|||.||||.+.
T Consensus 10 dFnPVYPYd~~~ 21 (26)
T 1x9t_B 10 TFNPVYPYDTEC 21 (26)
T ss_pred cCcccccCCCCc
Confidence 499999998754
No 8
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex, lipid binding PROT; HET: PLM; 1.30A {Penicillium marneffei}
Probab=16.21 E-value=2.4e+02 Score=25.01 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhcccCCCCchhHHhhHHHHHHHHHHHHHHHHh
Q 045032 12 SLINVLLQGRESAKQLQIQLNLRTSSSSHDQTRGIMLVQKIISSYEKALSM 62 (354)
Q Consensus 12 ~vi~EL~~GrElA~QL~~~L~~~~~~ss~e~~~e~~Lv~~ILsSf~~ALS~ 62 (354)
.|..-|.+.+..+.+|..-+....|..-.+.++ .|..+|...|.++|..
T Consensus 145 ~V~~~L~~qk~as~~Ls~AvvsKVP~~~~~iA~--~l~~~I~~a~~~aI~a 193 (194)
T 3l1n_A 145 KVENNLRQQEEAAQKLSELVSTKVPHELADISR--QLSDGIAAGIKKGIDA 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 356667788888888887776554544444233 5999999999999853
No 9
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=13.48 E-value=87 Score=23.87 Aligned_cols=45 Identities=27% Similarity=0.492 Sum_probs=24.0
Q ss_pred chhccccc--------ccC--CCCCCceeEEeeccCCCCCcccceeeecCCCCCEEEEEeeeeecC
Q 045032 113 SWRKYGQK--------DIL--GAKYPRGYYRCTYRNGQGCLATKQVQRSDEDPTIFEITYRGNHTC 168 (354)
Q Consensus 113 ~WRKYGQK--------~I~--gs~~pRsYYrCt~~~~~gC~a~KqVQr~~~d~~~~~vtY~G~Htc 168 (354)
.|.|-|.. .++ ..+-||++|.|.- ++.+.... +.+.|-|.=.+||
T Consensus 21 ~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~--------~~~~~~~~---s~LqV~yR~C~NC 75 (79)
T 1xiw_B 21 TWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG--------TDIYKDKE---STVQVHYRMCQSC 75 (79)
T ss_dssp EEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------C---EEEEEEEECSCC-
T ss_pred EEEECCcccccccCCeEEeccCcCCCCeEEEecC--------CCCCCccc---EEEEEEhhhcCCc
Confidence 67776653 244 3355999999943 22222111 3677778777777
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=10.86 E-value=6e+02 Score=20.08 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhccc
Q 045032 11 NSLINVLLQGRESAKQLQIQLNLR 34 (354)
Q Consensus 11 ~~vi~EL~~GrElA~QL~~~L~~~ 34 (354)
.++..||...+.-++-|..+|...
T Consensus 9 ~k~~~el~~v~~n~~lL~EML~~~ 32 (103)
T 1wrd_A 9 GKLRSELEMVSGNVRVMSEMLTEL 32 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358889999999999999998853
Done!