BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045034
         (147 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WOL|A Chain A, Crystal Structure Of St0689, An Archaeal Hepn Homologue
          Length = 122

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 61  QGLNSCSNLIAKFFTVSRSDIAQCCSAIDRVTSECSSWPDANTYTDPLPAFGYTDQELD 119
           QG+    + I+   T   +DI QC + +D+  +  S +PD   Y +  P   YT+++ D
Sbjct: 49  QGIEKRGHSISHLLTNPPADILQCATFLDKQYTP-SRYPD--VYYEGAPYEYYTERDAD 104


>pdb|3SAL|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
 pdb|3SAL|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
 pdb|3SAN|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
           Complexed With Zanamivir
 pdb|3SAN|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
           Complexed With Zanamivir
 pdb|3TI8|A Chain A, Crystal Structure Of Influenza A Virus Neuraminidase N5
           Complexed With Laninamivir
 pdb|3TI8|B Chain B, Crystal Structure Of Influenza A Virus Neuraminidase N5
           Complexed With Laninamivir
          Length = 395

 Score = 25.8 bits (55), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 42  GPCY-----GPDSGQAYYECFKAIQGLNSCSNLIAKFFTVSRSDIAQCCSAIDRVTSECS 96
           G CY     GP + QA Y+ FK+ +G+ +    ++  F     +   C   + +V  EC 
Sbjct: 155 GNCYWVMTDGPANSQASYKIFKSHEGMVTNEREVS--FQGGHIEECSCYPNLGKV--ECV 210

Query: 97  SWPDANTYTDPLPAFGYTDQELDMLVSY 124
              + N    P+  F   D++LD  V Y
Sbjct: 211 CRDNWNGMNRPILIF---DEDLDYEVGY 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,354,175
Number of Sequences: 62578
Number of extensions: 108222
Number of successful extensions: 243
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 3
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)