Query 045034
Match_columns 147
No_of_seqs 59 out of 61
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 99.9 2.1E-24 4.5E-29 164.9 10.4 112 1-133 1-114 (118)
2 PF05617 Prolamin_like: Prolam 99.7 6.3E-18 1.4E-22 113.7 2.6 64 55-126 1-70 (70)
3 PF07172 GRP: Glycine rich pro 96.7 0.0016 3.4E-08 48.0 2.9 29 1-30 1-29 (95)
4 PLN00214 putative protein; Pro 66.0 6.3 0.00014 30.7 2.8 31 64-95 45-76 (115)
5 PF03058 Sar8_2: Sar8.2 family 54.4 7.8 0.00017 29.3 1.4 28 1-30 1-30 (93)
6 cd04660 nsLTP_like nsLTP_like: 36.0 25 0.00055 23.8 1.6 42 82-128 26-67 (73)
7 smart00499 AAI Plant lipid tra 34.0 21 0.00045 22.5 0.9 43 82-128 26-73 (79)
8 cd01960 nsLTP1 nsLTP1: Non-spe 33.3 32 0.0007 23.8 1.8 33 56-93 3-37 (89)
9 cd00010 AAI_LTSS AAI_LTSS: Alp 32.9 46 0.001 21.2 2.4 21 73-93 6-28 (63)
10 PF00280 potato_inhibit: Potat 23.2 35 0.00076 23.5 0.5 15 96-119 2-16 (63)
11 PF00234 Tryp_alpha_amyl: Prot 21.0 68 0.0015 21.7 1.6 23 73-95 20-44 (90)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.91 E-value=2.1e-24 Score=164.91 Aligned_cols=112 Identities=19% Similarity=0.339 Sum_probs=83.8
Q ss_pred CccchhHHHHHHHHHHHhhhhhhhccccccCCCCCCCCCCCCCccCCCCCcchHHHhhhhhcCcchHHHHHHHHHhCccC
Q 045034 1 MAIKNNVFFIILVLMMTCHRAYATESRSYDLNNNNMNNPNLGPCYGPDSGQAYYECFKAIQGLNSCSNLIAKFFTVSRSD 80 (147)
Q Consensus 1 MA~~~~~~~~~l~l~~~~~~~~~~~~r~~~~~~~~~~~~~l~~rl~~~~~~~~~eCWssL~~l~sCt~EI~~fflnGq~~ 80 (147)
|.+||+++++.++-+++..|+ -...|+-+++.+.- . .+. .+--|..|||+||++++||+.||.+++++||++
T Consensus 1 m~iknV~~ll~v~cIvvsVna-~lpqf~~~fp~~~p----~-~~~--pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~ 72 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNA-QLPQFPAQLPFLFP----F-QLI--PGLPDITKCFSSVMDIPGCIAEISQSIFTGKFG 72 (118)
T ss_pred CchHHHHHHHHHHHHHheecc-CCCCCCCCCCCCCC----c-cCC--CCCccHHHHHHHHcCCcchHHHHHHHHHhchhc
Confidence 899999998888755555332 11233333322111 0 011 211289999999999999999999999999997
Q ss_pred c--hhhhHHHHHHhhcCCCCccCCCCCCCCCCCCCCchhhhhHhhhhcCCCCCCC
Q 045034 81 I--AQCCSAIDRVTSECSSWPDANTYTDPLPAFGYTDQELDMLVSYCSRASSPAA 133 (147)
Q Consensus 81 l--~~CC~AI~~I~~~C~~WP~Mf~~~~~l~slgfT~eE~~~LrgyC~~~~s~~~ 133 (147)
+ ++|||||...+ +| ||+| ||+++|+ ++||+.|++.+..++
T Consensus 73 ~Ig~aCCKAf~~~d-nC--wP~~-P~~P~fP---------p~LK~~Cs~i~~~~~ 114 (118)
T PLN00213 73 NLGPACCKAFLDAD-NC--IPKI-PFIPFFP---------PMLKEQCSRVAGATP 114 (118)
T ss_pred ccchHHHHHHHhhh-cc--ccCC-cCCCccc---------hHHHHHHhcccCCCC
Confidence 5 99999999977 99 9997 8887776 689999999987765
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.70 E-value=6.3e-18 Score=113.69 Aligned_cols=64 Identities=25% Similarity=0.565 Sum_probs=55.0
Q ss_pred HHhhhhhcCcchHHHHHHHHHhCc-cCc-hhhhHHHHHHhhcCCCCccCCCCCCCCCCCCCCchhhh----hHhhhhc
Q 045034 55 ECFKAIQGLNSCSNLIAKFFTVSR-SDI-AQCCSAIDRVTSECSSWPDANTYTDPLPAFGYTDQELD----MLVSYCS 126 (147)
Q Consensus 55 eCWssL~~l~sCt~EI~~fflnGq-~~l-~~CC~AI~~I~~~C~~WP~Mf~~~~~l~slgfT~eE~~----~LrgyC~ 126 (147)
|||+++.++++|+.||+.+|++|+ ..+ ++||+||..++++| ||+| +..+++++++.+ .|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C--~~~l------~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDC--HPAL------FKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhH--HHHH------HHHccCCCCccchhHHHHHhhcC
Confidence 699999999999999999999998 667 99999999999999 9995 344445555555 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=96.67 E-value=0.0016 Score=48.02 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred CccchhHHHHHHHHHHHhhhhhhhcccccc
Q 045034 1 MAIKNNVFFIILVLMMTCHRAYATESRSYD 30 (147)
Q Consensus 1 MA~~~~~~~~~l~l~~~~~~~~~~~~r~~~ 30 (147)
||+|+ |||+.|+|.++++.|+.+++|++.
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~~ 29 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAARELE 29 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHhh
Confidence 99887 777777878888889999999983
No 4
>PLN00214 putative protein; Provisional
Probab=66.02 E-value=6.3 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=26.7
Q ss_pred cchHHHHHHHHH-hCccCchhhhHHHHHHhhcC
Q 045034 64 NSCSNLIAKFFT-VSRSDIAQCCSAIDRVTSEC 95 (147)
Q Consensus 64 ~sCt~EI~~ffl-nGq~~l~~CC~AI~~I~~~C 95 (147)
.-|..||+..++ ||.. ...||+-|-..|++|
T Consensus 45 ~KCa~EI~a~i~~N~t~-s~~CC~~LVk~GK~C 76 (115)
T PLN00214 45 PKCALDIIAVVFENGTL-IDPCCNDLVKEGKVC 76 (115)
T ss_pred HhhHHHHHHHHHcCCCC-chHHHHHHHHHhhHH
Confidence 359999999999 4443 589999999999999
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=54.35 E-value=7.8 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=16.8
Q ss_pred CccchhHHHHHHHH--HHHhhhhhhhcccccc
Q 045034 1 MAIKNNVFFIILVL--MMTCHRAYATESRSYD 30 (147)
Q Consensus 1 MA~~~~~~~~~l~l--~~~~~~~~~~~~r~~~ 30 (147)
|++|++.| +.+.| +++. .|+-+.+|+..
T Consensus 1 M~~Ktnlf-l~lSLailLmI-ISSqv~AREms 30 (93)
T PF03058_consen 1 MVSKTNLF-LCLSLAILLMI-ISSQVDAREMS 30 (93)
T ss_pred CcchhhhH-HHHHHHHHHHH-HhhHHHHHHHh
Confidence 89888766 33333 2222 35677888775
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=36.05 E-value=25 Score=23.78 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=23.8
Q ss_pred hhhhHHHHHHhhcCCCCccCCCCCCCCCCCCCCchhhhhHhhhhcCC
Q 045034 82 AQCCSAIDRVTSECSSWPDANTYTDPLPAFGYTDQELDMLVSYCSRA 128 (147)
Q Consensus 82 ~~CC~AI~~I~~~C~~WP~Mf~~~~~l~slgfT~eE~~~LrgyC~~~ 128 (147)
.+||.+|+.++..| ==... +.+.. .+.....+.-|=+-|...
T Consensus 26 ~~CC~~vk~~~~~C--~C~~~--~~~~~-~~i~~~~a~~Lp~~Cgv~ 67 (73)
T cd04660 26 RECCAALRRADLPC--LCRYK--TSLVL-QIIDPDKAVYLPAKCGLP 67 (73)
T ss_pred HHHHHHHHcCCcCC--Eeecc--CCCcc-cccCHHHHHHHHHHcCCC
Confidence 78999999988778 11111 11111 124455556666777543
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=33.96 E-value=21 Score=22.51 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=24.9
Q ss_pred hhhhHHHHHH-hhcCCCCccCCCCCCC-CCCCC---CCchhhhhHhhhhcCC
Q 045034 82 AQCCSAIDRV-TSECSSWPDANTYTDP-LPAFG---YTDQELDMLVSYCSRA 128 (147)
Q Consensus 82 ~~CC~AI~~I-~~~C~~WP~Mf~~~~~-l~slg---fT~eE~~~LrgyC~~~ 128 (147)
..||.+++.+ ...| .=... ... ..-.+ -..+.+..|-+.|.-.
T Consensus 26 ~~CC~~l~~~~~~~C--~C~~~--~~~~~~~~~~~~~~~~~a~~lp~~C~~~ 73 (79)
T smart00499 26 QQCCSQLRGLNSAQC--RCLAL--RAAVLGILEIPGVNAQNAASLPSACGVP 73 (79)
T ss_pred hHHHHHHHHhcccCC--cchhh--hcccccccchhhhhHHHHHhhHHhcCCC
Confidence 8999999999 8888 43220 000 11111 1455566666777543
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=33.28 E-value=32 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=21.7
Q ss_pred HhhhhhcCcchHHHHHHHHHhCccCc--hhhhHHHHHHhh
Q 045034 56 CFKAIQGLNSCSNLIAKFFTVSRSDI--AQCCSAIDRVTS 93 (147)
Q Consensus 56 CWssL~~l~sCt~EI~~fflnGq~~l--~~CC~AI~~I~~ 93 (147)
|=..+..+..|. .|++|.... ++||.+++.+-.
T Consensus 3 C~~v~~~l~~C~-----~y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 3 CGQVTSLLAPCL-----GYLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred HHHHHhhHHhHH-----HHHhCCCCCCChHHhhhhHHHhh
Confidence 555555666664 355565544 889999999753
No 9
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=32.91 E-value=46 Score=21.20 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=15.1
Q ss_pred HHHhCccCc--hhhhHHHHHHhh
Q 045034 73 FFTVSRSDI--AQCCSAIDRVTS 93 (147)
Q Consensus 73 fflnGq~~l--~~CC~AI~~I~~ 93 (147)
.|++|...- .+||.+++.+.+
T Consensus 6 ~y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 6 SYLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHHcCCCCCCChHHHHHHHHHHh
Confidence 345565443 899999999964
No 10
>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....
Probab=23.17 E-value=35 Score=23.48 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=11.3
Q ss_pred CCCccCCCCCCCCCCCCCCchhhh
Q 045034 96 SSWPDANTYTDPLPAFGYTDQELD 119 (147)
Q Consensus 96 ~~WP~Mf~~~~~l~slgfT~eE~~ 119 (147)
++||++ +|.+.+|+-
T Consensus 2 ~sWPEL---------VG~~~~~A~ 16 (63)
T PF00280_consen 2 TSWPEL---------VGKSGEEAK 16 (63)
T ss_dssp SB-GGG---------TTSBHHHHH
T ss_pred CCCchh---------cCCCHHHHH
Confidence 479999 889888774
No 11
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=20.95 E-value=68 Score=21.65 Aligned_cols=23 Identities=17% Similarity=0.598 Sum_probs=17.8
Q ss_pred HHHhCccC-c-hhhhHHHHHHhhcC
Q 045034 73 FFTVSRSD-I-AQCCSAIDRVTSEC 95 (147)
Q Consensus 73 fflnGq~~-l-~~CC~AI~~I~~~C 95 (147)
.++.|... . ..||..++.|+..|
T Consensus 20 ~~~~~~~~~~~~~CC~~L~~l~~~C 44 (90)
T PF00234_consen 20 PYLQGGCQQPSQQCCQQLRQLDPQC 44 (90)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHhHHHHHHhHHh
Confidence 35666554 3 99999999998887
Done!