BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045035
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV L G DAT+ FEDVGHSP
Sbjct: 27 VYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSP 63
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV L G DAT+ FEDVGHSP
Sbjct: 27 VYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSP 63
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV L G DAT+ FEDVGHSP
Sbjct: 29 VYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSP 65
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+E+ L G DAT+ FED+GHSP
Sbjct: 29 VYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSP 65
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY+VT FL +HPGG+EV + GKDAT+ FEDVGHS
Sbjct: 31 VYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSS 67
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 33 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 34 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 34 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 34 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 33 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+E+ L G DAT+ FED+GHSP
Sbjct: 34 VYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSP 70
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV G DAT+ FEDVGHSP
Sbjct: 34 VYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSP 70
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV G DAT+ FEDVGHSP
Sbjct: 35 VYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSP 71
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSP 37
VY++T+FL +HPGG+EV G DAT+ FEDVGHSP
Sbjct: 29 VYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSP 65
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT+++EDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TK+LE+HPGG+EV G DAT++FEDVGHS
Sbjct: 27 VYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT+++EDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TK+LE+HPGG+EV G DAT++FEDVGHS
Sbjct: 29 VYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY+VT+FL +HPGG+EV L G DA++ FEDVGHS
Sbjct: 34 VYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHS 69
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+E G DAT++FEDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+E G DAT++FEDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+E G DAT++FEDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FED GHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV G DAT++FED GHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+EV + G DAT +FE VGHS
Sbjct: 27 VYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+ V G DAT +FEDVGHS
Sbjct: 27 VYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+H GG+EV G DAT++FEDVGHS
Sbjct: 27 VYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+ V + G DAT +FE VGHS
Sbjct: 27 VYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHS 36
VY++TKFLE+HPGG+ V + G DAT +FE VGHS
Sbjct: 27 VYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 90
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 91 ELVCPPYAPGETKEDIARKEQL 112
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 90
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 91 ELVCPPYAPGETKEDIARKEQL 112
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 90
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 91 ELVCPPYAPGETKEDIARKEQL 112
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 90
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 91 ELVCPPYAPGETKEDIARKEQL 112
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 90
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 91 ELVCPPYAPGETKEDIARKEQL 112
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV-----CTPP 55
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+ PP
Sbjct: 28 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKLGPLQGSMPP 85
Query: 56 KQ--PHYNQDKTSEFIIRLLQF 75
+ P Y +T E I R Q
Sbjct: 86 ELVCPPYAPGETKEDIARKEQL 107
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDVGHSPIGEIDVSTIPKKKV 51
VY++T+FL +HPGG +V GKD T FE + H+P ID P+KK+
Sbjct: 28 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP-NVIDKYIAPEKKL 76
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFEDV 33
VY V+ ++E HPGG++ + G D T+ F+ V
Sbjct: 30 VYNVSPYMEYHPGGEDELMRAAGSDGTELFDQV 62
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDAT 27
V+++T F ++HPGG +V L+ G+DAT
Sbjct: 28 VHDMTSFYKEHPGG-KVILNKAGQDAT 53
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 1 VYEVTKFLEDHPGGDEVFLSVTGKDATDDFE 31
VY++T ++ +HPG + L G+++T+ +E
Sbjct: 32 VYDLTPYVPNHPGPAGMMLVWCGQESTEAWE 62
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 45 TIPKKKVCTP--PKQPHYNQDKTSEFIIRLLQFLVPLAILGLA---VGIRIY 91
T+P + VC P+ P+ +K + +L + +PL ++G A VGI ++
Sbjct: 173 TMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW 224
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 1 VYEVTKFLEDHPGG-DEVFLSVTG 23
V++VT F+E HPGG D++ L+ G
Sbjct: 30 VFDVTDFVELHPGGPDKILLAAGG 53
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 29 DFEDVGHSPIGEIDVSTIPKKKVCTPPKQPHYNQ 62
D + SP D I K +C+PP +P Q
Sbjct: 306 DLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQ 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,134,477
Number of Sequences: 62578
Number of extensions: 118852
Number of successful extensions: 215
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 57
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)