BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045037
(832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 16/323 (4%)
Query: 31 VTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEK 90
+ Y S + +G+ + SGSIHY R+P W D L K K GLN IQTYV WN HEP
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 91 GQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPP 150
GQ+ F ++++ F+++ +LG+ LR GP+I AEW GG P WL E +I RS +P
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 151 FKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLA----FRELGTRYVHWA 206
+ + ++ +++ MK L GGP+I QVENEY + R L R+ H
Sbjct: 131 YLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 188
Query: 207 GTMAVRLNTG---VPWVMCKQKDAPGPVINTCNGRNCGDTFTGPNK--PSKPVLWTENWT 261
G V T ++ C ++ G N D F K P P++ +E +T
Sbjct: 189 GDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYT 248
Query: 262 ARYRVFGDPPSRRSAENLAFSVARFFSKNGTLAXXXXXXXXXXXXRLGS----SFVTTRY 317
+G P S E +A S+ ++ ++ G+ + T Y
Sbjct: 249 GWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGANSPYAAQPTSY 308
Query: 318 YDEAPIDEYGMLREPKWGHLRDL 340
+AP+ E G L E K+ LR++
Sbjct: 309 DYDAPLSEAGDLTE-KYFALRNI 330
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 641 IEVATMSKGMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIPRAFLKPKDNLLAIFE 695
I+ +KG VW+NG ++GRYW P P +++ + N + + E
Sbjct: 548 IQFPGWTKGQVWINGFNLGRYW-----PARGPQLTLFVPQHILMTSAPNTITVLE 597
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 153/321 (47%), Gaps = 26/321 (8%)
Query: 37 SLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE 96
+ ++NG+ + + IHYPR+P E W +K KA G N I YVFWN HEPE+G+++F
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 97 GNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMK 156
G ++ F ++ + G Y +R GP++ AEW GG P+WL + +I R +P + +K
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 157 EFTKMIIDMMKDAQLYASQGGPIILSQVENEYNT--IQLAFRELGTRYVHWAGTMAVRLN 214
F + + D Q+ S+GG II QVENEY I + V AG
Sbjct: 134 LFLNEVGKQLADLQI--SKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGF------ 185
Query: 215 TGVPWVMCK-----QKDAPGPVINTCN---GRNCGDTFTGPN--KPSKPVLWTENWTARY 264
TGVP C + +A ++ T N G N + F +P P+ +E W+ +
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 265 RVFGDPPSRRSAENLAFSVARFFSKNGTLAXXXXXXXXXXXXRLGSSF-----VTTRYYD 319
+G RSAE L +N + + G++F T Y
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGANFPNFSPTCTSYDY 305
Query: 320 EAPIDEYGMLREPKWGHLRDL 340
+API+E G + PK+ +R+L
Sbjct: 306 DAPINESGKVT-PKYLEVRNL 325
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 624 TWYKTYFDAPEGNDPLAIEVATMSKGMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIPRAF 683
+Y++ F+ E D + SKG VWVNG +IGRYW P Q++Y +P +
Sbjct: 509 AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWEI------GPQQTLY-VPGCW 560
Query: 684 LKPKDNLLAIFEEIG 698
LK +N + I + G
Sbjct: 561 LKKGENEIIILDXAG 575
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 37 SLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE 96
++GK SG+IHY R+PPE W+ L KA G N ++TYV WN+HEP +G+F+FE
Sbjct: 9 DFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFE 68
Query: 97 GNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMK 156
G+ +L KF+++ DLG+YA +R PFI AEW +GG P WL N+ RS +P + +
Sbjct: 69 GDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVG 127
Query: 157 EFTKMIIDMMKDAQLYASQGGPIILSQVENEYNT 190
+ ++ + GG I++ QVENEY +
Sbjct: 128 RYYDQLLPRLVPRL--LDNGGNILMMQVENEYGS 159
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 609 DRVKWNKTKGLGGPLTWYKTYFDAPEGNDPLAIEVATMSKGMVWVNGKSIGRYWVSFLSP 668
+++ ++K G P +Y F E D ++++ KG+ +VNG+++GR+W
Sbjct: 493 EKIDFSKGWTQGQP-AFYAYDFTVEEPKDTY-LDLSEFGKGVAFVNGQNLGRFW------ 544
Query: 669 TGKPSQSVYHIPRAFLKPKDNLLAIFEEIG 698
P+ S+Y IP ++LK N + IFE G
Sbjct: 545 NVGPTLSLY-IPHSYLKEGANRIIIFETEG 573
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 31 VTYDGRSLIINGKRELFFSGSIHYPRMP-PEMWWDILKKAKAGGLNVIQTYVFWNIHEPE 89
VT+D SL ++G+R + FSG +H R+P P ++ D+ K KA G N + YV W + E +
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 90 KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNP 149
G+F +G ++L F + G+Y R GP+I AE + GGFP WL+ V R+D P
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 150 PFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYN 189
+ + + I ++ AQ+ + GGP+IL Q ENEY+
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYS 182
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 27 FKRSVTYDGRSLIINGKRELFFSGSIHYPRMP-PEMWWDILKKAKAGGLNVIQTYVFWNI 85
++ VT+D S+ +NG+R + FSG +H R+P ++ DI +K KA G N + YV W +
Sbjct: 2 LQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWAL 61
Query: 86 HEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFR 145
E G ++ EG ++L F + G+Y R GP+I AE + GGFP WL+ V I
Sbjct: 62 LEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGILRT 121
Query: 146 SDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYN 189
SD K + I + AQ+ + GGPIIL Q ENEY+
Sbjct: 122 SDEAYLK-ATDNYASNIAATIAKAQI--TNGGPIILYQPENEYS 162
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 8 LLAALVC-LLMISTVVQGEKFKRSVTYDGR-SLIINGKRELFFSGSIH----YPRMPPEM 61
L ALVC L + VT DGR +L ++G L + ++ +P ++
Sbjct: 19 LALALVCGPLASGAHAADAAXPQLVTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKV 78
Query: 62 WWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNF 95
W I K G N +Q + W EP +GQF+F
Sbjct: 79 WPAIEKV----GANTVQVPIAWEQIEPVEGQFDF 108
>pdb|4EIT|A Chain A, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
pdb|4EIT|B Chain B, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
pdb|4EIT|C Chain C, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
pdb|4EIT|D Chain D, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
pdb|4EIT|E Chain E, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
pdb|4EIT|F Chain F, Crystal Structure Of An Enoyl-(Acyl Carrier Protein)
Reductase From Bartonella Henselae
Length = 276
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 319 DEAPIDEYGMLREPKWGHLRDLHSALRLCKKALLSGK---PSVENFGPNLEAHIYE-QPK 374
D A ID E KWG L L A+ K LSG+ S NF +Y
Sbjct: 75 DSASIDAVFNTIEKKWGKLDFLVHAIGFSDKEELSGRYVDISESNFXXTXNISVYSLTAL 134
Query: 375 TKACVAFLSNNDSRTPATLTFRGSKYYLPQYSI 407
TK S D + TLT+ G++ +P Y++
Sbjct: 135 TKRAEKLXS--DGGSILTLTYYGAEKVVPNYNV 165
>pdb|3GRK|A Chain A, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|B Chain B, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|C Chain C, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|D Chain D, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|E Chain E, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|F Chain F, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|G Chain G, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
pdb|3GRK|H Chain H, Crystal Structure Of Short Chain Dehydrogenase Reductase
Sdr Glucose-Ribitol Dehydrogenase From Brucella
Melitensis
Length = 293
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 319 DEAPIDEYGMLREPKWGHLRDLHSALRLCKKALLSGK---PSVENFGPNLEAHIYEQPKT 375
D A ID E KWG L L A+ K L+G+ S NF + +Y
Sbjct: 92 DAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAV 151
Query: 376 KACVAFLSNNDSRTPATLTFRGSKYYLPQYSI 407
L D + TLT+ G++ +P Y++
Sbjct: 152 SRRAEKLM-ADGGSILTLTYYGAEKVMPNYNV 182
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 458 LIKSASPLEQWSVTKDTTDYLWHTT--SISLDGFHLPLREKVLPVLRIASLGHMM 510
+I S + LEQ D DY+++ + GF +P+RE + I + G MM
Sbjct: 99 IITSINMLEQLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMM 153
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
pdb|1Q7G|B Chain B, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
Length = 359
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 34/219 (15%)
Query: 551 VTIGLPDSGVYLERRYAGTRTVAIQGLNTGTLDVTYSEWGQKVGLDGEKFQVYTQEGSDR 610
V GLP E G I+G+ +GTL ++E+ D KF SD
Sbjct: 146 VGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQAND-VKF-------SDV 197
Query: 611 VKWNKTKGLGGPLTWYKTYFDAPEGNDPL-AIEVATMSKGMVWVNGKSIGRYWVSFLSPT 669
VK K G + P+ D L ++VA V + G+ G V SPT
Sbjct: 198 VKVAKKLG-----------YTEPDPRDDLNGLDVAR----KVTIVGRISG---VEVESPT 239
Query: 670 GKPSQSVYHIPRAFLKPKDNLLAIFEEIGGNIDGVQIVTVNRNTICSYIKESDPTRVNNR 729
P QS+ P +K D L + ++ ++ N + +I + D
Sbjct: 240 SFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVA----T 295
Query: 730 KREDIVIQKVFDDARRSATLMCPDNRKILRVEFASYGNP 768
K + I+K +D + A+L DN ++ ++ Y NP
Sbjct: 296 KSVSVGIEK-YDYSHPFASLKGSDN--VISIKTKRYTNP 331
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1TVE|A Chain A, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
pdb|1TVE|B Chain B, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
Length = 358
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 34/219 (15%)
Query: 551 VTIGLPDSGVYLERRYAGTRTVAIQGLNTGTLDVTYSEWGQKVGLDGEKFQVYTQEGSDR 610
V GLP E G I+G+ +GTL ++E+ D KF SD
Sbjct: 145 VGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQAND-VKF-------SDV 196
Query: 611 VKWNKTKGLGGPLTWYKTYFDAPEGNDPL-AIEVATMSKGMVWVNGKSIGRYWVSFLSPT 669
VK K G + P+ D L ++VA V + G+ G V SPT
Sbjct: 197 VKVAKKLG-----------YTEPDPRDDLNGLDVAR----KVTIVGRISG---VEVESPT 238
Query: 670 GKPSQSVYHIPRAFLKPKDNLLAIFEEIGGNIDGVQIVTVNRNTICSYIKESDPTRVNNR 729
P QS+ P +K D L + ++ ++ N + +I + D
Sbjct: 239 SFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVA----T 294
Query: 730 KREDIVIQKVFDDARRSATLMCPDNRKILRVEFASYGNP 768
K + I+K +D + A+L DN ++ ++ Y NP
Sbjct: 295 KSVSVGIEK-YDYSHPFASLKGSDN--VISIKTKRYTNP 330
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 749 LMCPDNRKILRVEFASYG---NPFGACGNYILGN--CSAPSSKRIIEQYCLGKNRCAIPF 803
L CP + I+ VE A+YG + + + N C P + +I+ Q C + +C +
Sbjct: 20 LRCPGSDVIM-VENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVA 78
Query: 804 DQNIFDRERKLCPNVPKNLAIQVQC 828
+ F CP K L +Q C
Sbjct: 79 GSDAFPDP---CPGTYKYLEVQYDC 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,911,020
Number of Sequences: 62578
Number of extensions: 1231405
Number of successful extensions: 2518
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2499
Number of HSP's gapped (non-prelim): 17
length of query: 832
length of database: 14,973,337
effective HSP length: 107
effective length of query: 725
effective length of database: 8,277,491
effective search space: 6001180975
effective search space used: 6001180975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)