Query 045037
Match_columns 832
No_of_seqs 347 out of 1646
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-210 9E-215 1821.2 75.2 814 1-829 1-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-151 2E-156 1281.6 44.8 628 28-720 17-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2E-89 4.4E-94 749.2 20.4 298 37-343 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 3.8E-40 8.2E-45 383.7 13.9 289 31-329 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 5.8E-21 1.3E-25 214.5 8.9 144 51-212 1-162 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 2E-19 4.3E-24 158.6 4.6 76 749-828 1-80 (80)
7 KOG4729 Galactoside-binding le 99.8 5.1E-19 1.1E-23 182.7 8.0 88 742-832 41-133 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.1 3.1E-09 6.7E-14 116.1 19.7 151 31-222 1-157 (298)
9 PF13364 BetaGal_dom4_5: Beta- 99.0 4.5E-10 9.7E-15 105.4 7.2 69 620-694 33-104 (111)
10 PRK10150 beta-D-glucuronidase; 98.9 1.9E-07 4.2E-12 111.8 27.0 159 29-222 276-448 (604)
11 PF00150 Cellulase: Cellulase 98.7 1.6E-07 3.5E-12 100.3 14.5 160 41-222 4-171 (281)
12 PRK09525 lacZ beta-D-galactosi 98.6 1E-06 2.2E-11 110.9 18.7 147 29-221 334-487 (1027)
13 PF13364 BetaGal_dom4_5: Beta- 98.5 7.4E-07 1.6E-11 83.8 10.3 84 465-555 24-110 (111)
14 PRK10340 ebgA cryptic beta-D-g 98.5 2.1E-06 4.6E-11 108.1 16.3 149 29-219 318-472 (1021)
15 COG3250 LacZ Beta-galactosidas 98.4 2.3E-06 5E-11 104.3 15.3 135 29-210 284-424 (808)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.3E-05 2.8E-10 85.9 8.9 116 83-223 3-125 (254)
17 PF02837 Glyco_hydro_2_N: Glyc 98.0 6.7E-05 1.4E-09 74.7 11.5 98 472-575 64-164 (167)
18 PF03198 Glyco_hydro_72: Gluca 97.9 0.0002 4.3E-09 78.1 14.8 152 29-219 9-179 (314)
19 PLN02705 beta-amylase 97.7 0.00013 2.9E-09 84.4 9.9 80 58-143 266-357 (681)
20 PF13204 DUF4038: Protein of u 97.7 0.00072 1.6E-08 74.0 14.8 227 35-291 2-274 (289)
21 PLN02905 beta-amylase 97.7 0.00019 4E-09 83.5 10.1 80 58-143 284-375 (702)
22 PLN02801 beta-amylase 97.6 0.00022 4.7E-09 81.7 10.0 80 58-143 35-126 (517)
23 TIGR03356 BGL beta-galactosida 97.6 0.00018 3.9E-09 82.9 8.6 96 60-167 54-150 (427)
24 PLN02803 beta-amylase 97.6 0.00032 7E-09 80.6 10.3 81 58-144 105-197 (548)
25 PLN00197 beta-amylase; Provisi 97.5 0.00034 7.3E-09 80.7 10.1 80 58-143 125-216 (573)
26 PLN02161 beta-amylase 97.5 0.00051 1.1E-08 78.7 10.5 81 58-144 115-207 (531)
27 PF01373 Glyco_hydro_14: Glyco 97.3 0.00041 8.9E-09 78.1 6.8 112 61-184 17-152 (402)
28 PF00331 Glyco_hydro_10: Glyco 97.2 0.0009 1.9E-08 74.3 7.8 157 47-224 11-179 (320)
29 COG3693 XynA Beta-1,4-xylanase 97.1 0.0023 5E-08 69.8 9.5 133 69-224 55-194 (345)
30 PF14488 DUF4434: Domain of un 96.7 0.029 6.3E-07 56.7 13.7 135 55-220 15-158 (166)
31 PF02837 Glyco_hydro_2_N: Glyc 96.6 0.004 8.6E-08 62.0 6.4 67 620-694 66-136 (167)
32 PF00232 Glyco_hydro_1: Glycos 96.5 0.0012 2.6E-08 76.8 1.9 97 60-168 58-156 (455)
33 PF07745 Glyco_hydro_53: Glyco 96.3 0.012 2.6E-07 65.6 8.3 104 63-190 27-137 (332)
34 COG2730 BglC Endoglucanase [Ca 96.1 0.018 3.9E-07 66.2 8.6 117 58-190 66-193 (407)
35 PRK10150 beta-D-glucuronidase; 96.0 0.036 7.8E-07 66.9 11.2 74 474-553 63-137 (604)
36 PRK09852 cryptic 6-phospho-bet 96.0 0.007 1.5E-07 70.8 4.9 96 60-167 71-169 (474)
37 PRK15014 6-phospho-beta-glucos 95.9 0.008 1.7E-07 70.3 5.0 96 60-167 69-167 (477)
38 PRK10340 ebgA cryptic beta-D-g 95.5 0.05 1.1E-06 69.4 10.1 92 476-576 109-205 (1021)
39 PLN02998 beta-glucosidase 95.5 0.015 3.2E-07 68.5 4.9 99 60-166 82-182 (497)
40 PRK09593 arb 6-phospho-beta-gl 95.4 0.019 4.2E-07 67.2 5.7 100 60-167 73-175 (478)
41 PRK13511 6-phospho-beta-galact 95.4 0.018 3.9E-07 67.3 5.2 95 60-166 54-149 (469)
42 PLN02814 beta-glucosidase 95.4 0.016 3.5E-07 68.2 4.8 72 60-139 77-149 (504)
43 PRK09589 celA 6-phospho-beta-g 95.3 0.02 4.4E-07 67.0 5.2 100 60-167 67-169 (476)
44 TIGR01233 lacG 6-phospho-beta- 95.2 0.033 7.2E-07 65.1 6.6 95 60-166 53-148 (467)
45 COG3867 Arabinogalactan endo-1 95.2 0.09 2E-06 56.9 9.1 112 62-190 65-183 (403)
46 PF14871 GHL6: Hypothetical gl 95.0 0.13 2.9E-06 50.0 9.0 98 64-166 4-123 (132)
47 PLN02849 beta-glucosidase 94.9 0.029 6.3E-07 66.1 5.2 100 60-167 79-180 (503)
48 PRK09525 lacZ beta-D-galactosi 94.9 0.099 2.2E-06 66.7 10.1 92 475-575 119-216 (1027)
49 PRK09936 hypothetical protein; 94.2 0.19 4.1E-06 54.7 8.7 58 55-118 33-91 (296)
50 PF02638 DUF187: Glycosyl hydr 94.0 0.21 4.7E-06 55.4 9.0 117 58-185 17-161 (311)
51 COG2723 BglB Beta-glucosidase/ 92.7 0.16 3.5E-06 58.7 5.6 96 60-167 59-157 (460)
52 TIGR01515 branching_enzym alph 91.8 1.9 4.2E-05 52.3 13.5 69 51-119 143-226 (613)
53 TIGR00542 hxl6Piso_put hexulos 90.4 3.5 7.6E-05 44.6 12.7 131 59-217 15-149 (279)
54 smart00642 Aamy Alpha-amylase 90.2 0.69 1.5E-05 46.7 6.5 67 60-126 19-97 (166)
55 PLN02447 1,4-alpha-glucan-bran 89.6 6.7 0.00014 48.6 15.4 61 59-120 250-321 (758)
56 PRK14706 glycogen branching en 89.0 4.8 0.0001 49.1 13.6 54 66-119 174-237 (639)
57 PRK12568 glycogen branching en 88.9 6.3 0.00014 48.7 14.4 54 65-121 275-341 (730)
58 smart00812 Alpha_L_fucos Alpha 88.6 52 0.0011 37.8 22.1 249 52-351 76-337 (384)
59 COG1649 Uncharacterized protei 88.0 2.5 5.4E-05 48.7 9.6 123 58-189 62-210 (418)
60 PRK05402 glycogen branching en 87.7 5.5 0.00012 49.4 13.2 53 67-119 273-335 (726)
61 KOG4729 Galactoside-binding le 86.5 1.1 2.4E-05 47.9 5.3 162 649-830 54-232 (265)
62 COG3934 Endo-beta-mannanase [C 86.4 0.54 1.2E-05 54.1 3.2 157 37-211 3-168 (587)
63 PRK14705 glycogen branching en 86.3 10 0.00023 49.4 14.8 55 65-119 771-835 (1224)
64 PRK13210 putative L-xylulose 5 86.2 6.7 0.00014 42.2 11.5 131 60-217 16-149 (284)
65 PRK09441 cytoplasmic alpha-amy 85.5 1.2 2.7E-05 52.3 5.7 68 52-119 7-101 (479)
66 PF01229 Glyco_hydro_39: Glyco 83.4 3.4 7.4E-05 48.7 8.2 69 49-120 28-105 (486)
67 PF01261 AP_endonuc_2: Xylose 82.6 3.8 8.1E-05 41.4 7.2 124 66-217 1-128 (213)
68 PF14307 Glyco_tran_WbsX: Glyc 81.9 17 0.00036 41.0 12.6 139 57-222 55-196 (345)
69 PRK01060 endonuclease IV; Prov 81.0 20 0.00043 38.7 12.4 94 62-183 14-109 (281)
70 cd06593 GH31_xylosidase_YicI Y 80.9 6.6 0.00014 43.3 8.8 70 57-126 21-93 (308)
71 PF13200 DUF4015: Putative gly 80.5 6.6 0.00014 43.8 8.6 149 58-217 11-190 (316)
72 PF00128 Alpha-amylase: Alpha 80.3 1.6 3.5E-05 46.7 3.8 57 63-119 7-72 (316)
73 PF05913 DUF871: Bacterial pro 79.8 3.7 8E-05 46.6 6.4 70 48-123 2-71 (357)
74 cd00019 AP2Ec AP endonuclease 79.4 26 0.00055 37.8 12.7 98 60-186 10-108 (279)
75 TIGR02631 xylA_Arthro xylose i 79.0 25 0.00054 40.4 12.9 91 58-167 30-125 (382)
76 TIGR02402 trehalose_TreZ malto 78.9 3.2 7E-05 49.6 6.0 53 64-119 115-180 (542)
77 PRK09856 fructoselysine 3-epim 78.8 37 0.00079 36.4 13.6 129 61-217 14-145 (275)
78 PRK13209 L-xylulose 5-phosphat 78.6 17 0.00037 39.1 11.0 129 61-217 22-154 (283)
79 PRK12313 glycogen branching en 77.9 3.7 8.1E-05 50.0 6.2 54 66-119 177-240 (633)
80 TIGR01531 glyc_debranch glycog 77.4 7.8 0.00017 50.7 8.8 114 36-155 103-236 (1464)
81 KOG2230 Predicted beta-mannosi 76.5 31 0.00068 41.0 12.5 150 35-224 327-494 (867)
82 TIGR03234 OH-pyruv-isom hydrox 75.6 39 0.00084 35.9 12.5 43 61-117 15-57 (254)
83 PLN02960 alpha-amylase 74.2 5.9 0.00013 49.6 6.4 57 63-119 420-486 (897)
84 TIGR02104 pulA_typeI pullulana 73.7 5.3 0.00012 48.5 5.9 55 64-119 168-249 (605)
85 PF13199 Glyco_hydro_66: Glyco 72.4 63 0.0014 39.0 14.2 80 59-138 117-211 (559)
86 COG0296 GlgB 1,4-alpha-glucan 72.4 6.1 0.00013 47.8 5.9 56 59-118 164-233 (628)
87 PF08531 Bac_rhamnosid_N: Alph 72.4 4.9 0.00011 40.7 4.5 55 640-696 7-64 (172)
88 PF11324 DUF3126: Protein of u 72.3 10 0.00022 32.4 5.4 34 504-537 24-59 (63)
89 cd06602 GH31_MGAM_SI_GAA This 71.8 32 0.0007 38.7 11.2 74 52-126 13-93 (339)
90 cd04908 ACT_Bt0572_1 N-termina 70.5 16 0.00034 30.6 6.4 55 59-117 12-66 (66)
91 PRK09989 hypothetical protein; 70.1 51 0.0011 35.2 11.9 43 61-117 16-58 (258)
92 TIGR02403 trehalose_treC alpha 69.9 6.4 0.00014 47.2 5.4 57 61-119 28-95 (543)
93 PRK09505 malS alpha-amylase; R 69.5 8.2 0.00018 47.5 6.2 58 62-119 232-312 (683)
94 PF03659 Glyco_hydro_71: Glyco 69.4 20 0.00044 41.1 9.0 54 57-119 14-67 (386)
95 PF08531 Bac_rhamnosid_N: Alph 68.8 21 0.00046 36.1 8.1 57 498-555 5-68 (172)
96 PF14587 Glyco_hydr_30_2: O-Gl 68.6 21 0.00046 40.8 8.7 139 70-223 57-226 (384)
97 cd06592 GH31_glucosidase_KIAA1 68.4 36 0.00078 37.6 10.5 70 54-126 24-97 (303)
98 PRK10785 maltodextrin glucosid 68.0 9.6 0.00021 46.2 6.4 57 63-119 182-246 (598)
99 PRK09997 hydroxypyruvate isome 67.9 78 0.0017 33.7 12.7 49 52-117 10-58 (258)
100 TIGR02456 treS_nterm trehalose 67.8 10 0.00022 45.5 6.4 57 60-119 28-96 (539)
101 PF02065 Melibiase: Melibiase; 66.4 42 0.00091 38.7 10.8 111 52-162 50-178 (394)
102 cd06589 GH31 The enzymes of gl 65.5 21 0.00046 38.6 7.9 65 58-123 22-90 (265)
103 PRK13398 3-deoxy-7-phosphohept 65.2 30 0.00065 37.7 8.9 81 29-119 14-98 (266)
104 KOG0496 Beta-galactosidase [Ca 64.3 1.9 4.1E-05 51.6 -0.5 81 711-809 310-390 (649)
105 PRK10933 trehalose-6-phosphate 64.2 13 0.00028 44.7 6.5 55 62-119 35-101 (551)
106 cd06591 GH31_xylosidase_XylS X 64.2 14 0.00031 41.1 6.3 72 52-124 13-91 (319)
107 PF02449 Glyco_hydro_42: Beta- 63.2 17 0.00037 41.2 6.9 86 249-345 286-372 (374)
108 PF02679 ComA: (2R)-phospho-3- 62.3 12 0.00026 40.2 5.1 52 59-120 83-134 (244)
109 cd06598 GH31_transferase_CtsZ 61.4 19 0.0004 40.2 6.6 67 58-124 22-95 (317)
110 TIGR00677 fadh2_euk methylenet 61.0 35 0.00076 37.5 8.6 109 46-168 130-251 (281)
111 COG3623 SgaU Putative L-xylulo 60.6 1.2E+02 0.0027 32.5 11.8 23 60-82 18-40 (287)
112 COG1306 Uncharacterized conser 60.2 17 0.00037 39.9 5.7 59 58-119 75-144 (400)
113 cd06603 GH31_GANC_GANAB_alpha 58.8 19 0.00042 40.4 6.3 74 52-126 13-91 (339)
114 PRK14510 putative bifunctional 58.6 14 0.0003 48.6 5.6 56 64-119 191-267 (1221)
115 PF01791 DeoC: DeoC/LacD famil 57.5 4.6 9.9E-05 42.8 1.0 53 63-118 79-131 (236)
116 smart00518 AP2Ec AP endonuclea 57.5 73 0.0016 34.1 10.3 92 62-183 12-104 (273)
117 KOG2024 Beta-Glucuronidase GUS 57.2 15 0.00033 39.7 4.7 55 464-519 73-130 (297)
118 PRK12677 xylose isomerase; Pro 56.8 72 0.0016 36.7 10.5 89 61-167 32-124 (384)
119 PLN02361 alpha-amylase 56.2 23 0.00049 41.0 6.3 57 63-119 32-96 (401)
120 PF06832 BiPBP_C: Penicillin-B 55.8 20 0.00044 32.0 4.7 51 499-556 34-84 (89)
121 TIGR02401 trehalose_TreY malto 55.6 23 0.00049 44.5 6.5 64 58-121 14-87 (825)
122 cd06601 GH31_lyase_GLase GLase 54.9 92 0.002 35.1 10.8 72 52-124 13-89 (332)
123 cd06599 GH31_glycosidase_Aec37 54.7 31 0.00067 38.4 6.9 66 59-124 28-98 (317)
124 cd06600 GH31_MGAM-like This fa 54.4 25 0.00054 39.2 6.1 73 52-125 13-90 (317)
125 cd06604 GH31_glucosidase_II_Ma 53.4 28 0.00061 39.1 6.4 73 52-125 13-90 (339)
126 TIGR02102 pullulan_Gpos pullul 51.8 22 0.00048 46.1 5.8 21 99-119 555-575 (1111)
127 TIGR02100 glgX_debranch glycog 51.4 21 0.00045 44.2 5.3 55 65-119 189-265 (688)
128 PF01055 Glyco_hydro_31: Glyco 51.4 27 0.00058 40.5 6.0 70 58-128 41-112 (441)
129 PRK14511 maltooligosyl trehalo 51.2 30 0.00065 43.7 6.6 62 57-122 17-92 (879)
130 PF14683 CBM-like: Polysacchar 50.9 15 0.00032 37.3 3.3 53 645-698 91-153 (167)
131 PF11875 DUF3395: Domain of un 50.8 13 0.00027 37.2 2.7 67 760-829 55-134 (151)
132 cd06595 GH31_xylosidase_XylS-l 50.6 40 0.00087 37.0 6.9 71 52-122 14-97 (292)
133 cd06416 GH25_Lys1-like Lys-1 i 50.3 46 0.001 34.1 7.0 87 50-139 56-157 (196)
134 PRK14507 putative bifunctional 50.2 29 0.00063 46.8 6.6 61 58-121 756-829 (1693)
135 cd06545 GH18_3CO4_chitinase Th 49.6 65 0.0014 34.4 8.2 96 90-214 36-132 (253)
136 PRK08645 bifunctional homocyst 49.6 53 0.0011 40.1 8.3 110 42-167 460-578 (612)
137 PF08308 PEGA: PEGA domain; I 49.4 19 0.0004 30.6 3.3 46 500-557 3-48 (71)
138 TIGR02103 pullul_strch alpha-1 48.0 29 0.00063 44.1 5.9 21 99-119 404-424 (898)
139 PRK03705 glycogen debranching 47.8 29 0.00062 42.8 5.7 55 65-119 184-262 (658)
140 PRK14582 pgaB outer membrane N 47.8 55 0.0012 40.3 8.1 110 60-188 334-468 (671)
141 KOG0626 Beta-glucosidase, lact 47.3 37 0.0008 40.3 6.2 99 61-167 92-194 (524)
142 cd06565 GH20_GcnA-like Glycosy 46.4 1.2E+02 0.0026 33.6 9.9 60 58-120 15-81 (301)
143 PRK09432 metF 5,10-methylenete 46.4 55 0.0012 36.2 7.2 87 65-168 168-266 (296)
144 PLN00196 alpha-amylase; Provis 45.8 43 0.00092 39.1 6.5 57 63-119 47-112 (428)
145 PF01261 AP_endonuc_2: Xylose 45.3 1.3E+02 0.0029 29.9 9.4 104 60-191 27-137 (213)
146 TIGR00676 fadh2 5,10-methylene 45.2 93 0.002 33.9 8.7 107 45-168 125-247 (272)
147 PRK08673 3-deoxy-7-phosphohept 45.0 66 0.0014 36.4 7.6 81 30-119 81-164 (335)
148 TIGR03849 arch_ComA phosphosul 43.5 44 0.00096 35.9 5.6 52 59-120 70-121 (237)
149 PF02228 Gag_p19: Major core p 43.3 10 0.00022 33.5 0.6 39 58-113 20-58 (92)
150 cd06597 GH31_transferase_CtsY 42.9 56 0.0012 36.9 6.7 73 52-124 13-110 (340)
151 PF04914 DltD_C: DltD C-termin 41.7 63 0.0014 31.5 5.9 50 100-168 37-87 (130)
152 cd02742 GH20_hexosaminidase Be 41.0 1.1E+02 0.0024 33.7 8.6 60 57-119 13-92 (303)
153 PLN02877 alpha-amylase/limit d 40.1 49 0.0011 42.3 6.1 21 99-119 466-486 (970)
154 PF02055 Glyco_hydro_30: O-Gly 39.0 1.1E+02 0.0023 36.6 8.4 277 43-346 74-425 (496)
155 cd00537 MTHFR Methylenetetrahy 38.9 97 0.0021 33.5 7.6 108 47-168 130-250 (274)
156 TIGR00433 bioB biotin syntheta 37.2 49 0.0011 36.0 5.0 52 63-117 123-176 (296)
157 cd06418 GH25_BacA-like BacA is 36.1 1.2E+02 0.0027 31.9 7.6 89 58-168 50-139 (212)
158 COG0366 AmyA Glycosidases [Car 35.9 44 0.00094 38.9 4.6 56 64-119 33-97 (505)
159 PLN02784 alpha-amylase 34.3 78 0.0017 40.0 6.4 56 63-119 524-588 (894)
160 PF14701 hDGE_amylase: glucano 34.2 1.9E+02 0.0041 33.8 9.2 94 52-155 12-128 (423)
161 PF00728 Glyco_hydro_20: Glyco 33.8 99 0.0022 34.4 6.9 59 58-119 16-93 (351)
162 TIGR02455 TreS_stutzeri trehal 33.8 95 0.0021 38.1 6.9 75 58-136 76-175 (688)
163 PLN03059 beta-galactosidase; P 33.5 1.6E+02 0.0034 37.4 8.8 68 621-696 469-545 (840)
164 cd04882 ACT_Bt0572_2 C-termina 32.6 92 0.002 25.1 4.8 55 59-115 10-64 (65)
165 PLN02763 hydrolase, hydrolyzin 30.9 1.3E+02 0.0029 38.7 7.9 74 52-126 190-268 (978)
166 cd06564 GH20_DspB_LnbB-like Gl 30.5 1.6E+02 0.0034 32.9 7.7 59 58-119 15-102 (326)
167 COG1891 Uncharacterized protei 30.5 17 0.00036 37.1 -0.0 63 46-118 117-186 (235)
168 COG1523 PulA Type II secretory 30.5 72 0.0016 39.5 5.3 55 65-119 205-285 (697)
169 PRK10658 putative alpha-glucos 30.2 1.3E+02 0.0029 37.1 7.6 68 58-125 281-351 (665)
170 PF12876 Cellulase-like: Sugar 30.1 60 0.0013 29.0 3.5 48 174-221 6-62 (88)
171 cd01299 Met_dep_hydrolase_A Me 29.4 1.2E+02 0.0025 33.6 6.4 59 58-119 118-180 (342)
172 KOG1065 Maltase glucoamylase a 29.3 96 0.0021 38.8 6.1 72 52-126 300-378 (805)
173 cd08560 GDPD_EcGlpQ_like_1 Gly 28.8 1.6E+02 0.0034 33.6 7.3 53 61-119 246-298 (356)
174 COG3589 Uncharacterized conser 28.8 1.1E+02 0.0023 34.6 5.8 72 48-126 4-76 (360)
175 TIGR00587 nfo apurinic endonuc 28.5 3.5E+02 0.0076 29.2 9.8 83 63-167 14-98 (274)
176 PTZ00372 endonuclease 4-like p 28.4 2.8E+02 0.0061 32.4 9.3 78 64-167 145-228 (413)
177 cd00544 CobU Adenosylcobinamid 28.4 3.3E+02 0.0072 27.5 8.9 49 155-211 101-149 (169)
178 cd06563 GH20_chitobiase-like T 27.9 2.7E+02 0.0059 31.5 9.1 60 57-119 15-106 (357)
179 PF14307 Glyco_tran_WbsX: Glyc 27.9 1E+02 0.0022 34.8 5.6 44 34-80 150-195 (345)
180 KOG3698 Hyaluronoglucosaminida 27.8 2.2E+02 0.0047 34.3 8.2 72 41-120 12-95 (891)
181 cd06594 GH31_glucosidase_YihQ 27.7 1.9E+02 0.004 32.3 7.6 68 58-125 21-97 (317)
182 PRK12331 oxaloacetate decarbox 27.3 1.4E+02 0.003 35.1 6.8 56 52-119 88-143 (448)
183 PRK09267 flavodoxin FldA; Vali 27.2 3.4E+02 0.0074 26.8 8.8 74 40-116 44-117 (169)
184 PF08924 DUF1906: Domain of un 27.0 1.4E+02 0.0031 29.1 5.8 87 58-168 36-127 (136)
185 PF07691 PA14: PA14 domain; I 26.5 2.7E+02 0.006 26.3 7.7 70 477-554 47-122 (145)
186 cd06525 GH25_Lyc-like Lyc mura 26.5 55 0.0012 33.3 2.9 42 99-140 103-148 (184)
187 PRK09856 fructoselysine 3-epim 26.2 84 0.0018 33.6 4.5 56 60-119 90-149 (275)
188 cd06547 GH85_ENGase Endo-beta- 26.0 1.1E+02 0.0025 34.5 5.6 115 77-222 33-149 (339)
189 PTZ00372 endonuclease 4-like p 25.9 3.3E+02 0.0071 31.8 9.3 84 36-120 149-240 (413)
190 KOG0259 Tyrosine aminotransfer 25.9 67 0.0015 36.8 3.6 87 28-118 150-238 (447)
191 KOG3833 Uncharacterized conser 25.5 68 0.0015 35.7 3.5 53 61-119 444-499 (505)
192 COG5309 Exo-beta-1,3-glucanase 25.5 6E+02 0.013 28.1 10.4 118 58-225 61-180 (305)
193 cd06415 GH25_Cpl1-like Cpl-1 l 25.5 2.7E+02 0.0058 28.6 7.8 43 99-141 108-157 (196)
194 PLN02389 biotin synthase 25.3 87 0.0019 36.0 4.6 52 62-116 177-230 (379)
195 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.1 1.5E+02 0.0033 32.3 6.2 50 57-118 88-137 (275)
196 PRK13209 L-xylulose 5-phosphat 25.1 3.4E+02 0.0074 29.1 9.0 60 56-117 53-117 (283)
197 PRK06703 flavodoxin; Provision 25.0 3.1E+02 0.0067 26.6 7.9 100 40-167 46-148 (151)
198 PF01075 Glyco_transf_9: Glyco 24.8 59 0.0013 34.0 2.9 78 41-121 103-194 (247)
199 PF08306 Glyco_hydro_98M: Glyc 24.8 61 0.0013 36.2 3.0 87 47-158 105-199 (324)
200 TIGR01698 PUNP purine nucleoti 24.7 1E+02 0.0022 33.1 4.6 40 39-78 47-87 (237)
201 PRK07094 biotin synthase; Prov 24.3 64 0.0014 35.7 3.2 50 63-115 129-181 (323)
202 COG1735 Php Predicted metal-de 24.2 1.5E+02 0.0033 33.0 5.8 86 64-166 52-161 (316)
203 cd06562 GH20_HexA_HexB-like Be 24.1 3.9E+02 0.0086 30.2 9.5 60 57-119 15-90 (348)
204 TIGR02635 RhaI_grampos L-rhamn 24.1 9.9E+02 0.021 27.6 12.7 113 29-167 11-126 (378)
205 cd00003 PNPsynthase Pyridoxine 24.0 94 0.002 33.3 4.1 50 58-125 108-158 (234)
206 PRK05265 pyridoxine 5'-phospha 23.5 98 0.0021 33.3 4.2 50 58-125 111-161 (239)
207 cd03789 GT1_LPS_heptosyltransf 23.4 1.2E+02 0.0027 32.4 5.2 78 45-125 124-213 (279)
208 PRK10076 pyruvate formate lyas 22.9 3.3E+02 0.0071 28.7 8.0 126 58-217 52-209 (213)
209 PRK10422 lipopolysaccharide co 22.9 1.6E+02 0.0034 33.0 6.0 75 44-121 184-273 (352)
210 PRK13210 putative L-xylulose 5 22.9 1.1E+02 0.0025 32.7 4.7 60 60-120 94-154 (284)
211 KOG0683 Glutamine synthetase [ 22.5 1E+02 0.0022 35.1 4.2 44 87-131 203-258 (380)
212 PRK09875 putative hydrolase; P 22.5 1.5E+02 0.0033 32.8 5.6 88 31-138 8-95 (292)
213 cd04883 ACT_AcuB C-terminal AC 22.5 2.8E+02 0.006 22.9 6.1 56 60-116 13-69 (72)
214 cd06570 GH20_chitobiase-like_1 22.1 3.3E+02 0.0072 30.4 8.2 60 57-119 15-88 (311)
215 COG2884 FtsE Predicted ATPase 21.9 76 0.0017 33.3 2.9 19 644-662 52-70 (223)
216 PF13380 CoA_binding_2: CoA bi 21.4 1.8E+02 0.0038 27.5 5.1 44 57-116 63-106 (116)
217 PRK08599 coproporphyrinogen II 21.4 74 0.0016 36.1 3.0 60 48-114 89-151 (377)
218 TIGR03700 mena_SCO4494 putativ 21.4 67 0.0015 36.3 2.6 52 62-116 149-205 (351)
219 PRK09997 hydroxypyruvate isome 21.2 1.2E+02 0.0026 32.3 4.5 60 60-119 85-144 (258)
220 cd04886 ACT_ThrD-II-like C-ter 21.1 4.3E+02 0.0093 21.2 7.0 59 58-116 8-72 (73)
221 PRK07534 methionine synthase I 21.0 4.1E+02 0.0089 30.0 8.7 73 102-212 221-295 (336)
222 cd07944 DRE_TIM_HOA_like 4-hyd 20.9 1.9E+02 0.004 31.5 5.8 67 54-120 14-81 (266)
223 PRK14040 oxaloacetate decarbox 20.8 1.8E+02 0.0039 35.5 6.2 53 52-116 89-141 (593)
224 PLN02540 methylenetetrahydrofo 20.6 2.2E+02 0.0048 34.5 6.8 90 65-168 161-259 (565)
225 TIGR00559 pdxJ pyridoxine 5'-p 20.3 1.2E+02 0.0027 32.5 4.2 50 58-125 108-158 (237)
226 TIGR03551 F420_cofH 7,8-dideme 20.1 78 0.0017 35.6 2.8 50 63-115 141-195 (343)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4e-210 Score=1821.21 Aligned_cols=814 Identities=47% Similarity=0.880 Sum_probs=735.1
Q ss_pred CCchhHHHH-HHHHHHHHHhhhhccCccceeEEEeCCeEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEE
Q 045037 1 MSVPSRVLL-AALVCLLMISTVVQGEKFKRSVTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQT 79 (832)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~ 79 (832)
|+-+|++.. ..+.++|+.+.-+. ....+|+||+++|+|||||++|+||||||||+||++|+|+|+||||+|||||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~t 78 (840)
T PLN03059 1 MLRGSLVVFLLLFLLFLLSSSWVS--HGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT 78 (840)
T ss_pred CcccceehhhHHHHHHHhhhhhhc--cceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEE
Confidence 555665322 22233333333343 224689999999999999999999999999999999999999999999999999
Q ss_pred ceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHH
Q 045037 80 YVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFT 159 (832)
Q Consensus 80 yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~ 159 (832)
|||||+|||+||+|||+|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++|++||+|+++|++|+
T Consensus 79 YV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~ 158 (840)
T PLN03059 79 YVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFT 158 (840)
T ss_pred EecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHHHHHHHHHHhcCCccceEEecccCCCCCcccccCCCC
Q 045037 160 KMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWVMCKQKDAPGPVINTCNGRN 239 (832)
Q Consensus 160 ~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~ 239 (832)
++|+++|+++++++++||||||+|||||||++.+.++.+|++||+||+++++++|++|||+||++.++++++++||||.+
T Consensus 159 ~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~ 238 (840)
T PLN03059 159 EKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFY 238 (840)
T ss_pred HHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCch
Confidence 99999999889999999999999999999998666777899999999999999999999999999888889999999988
Q ss_pred CCCCCCCCCCCCCCceeeccccccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeecccCCCCC-CCCCcccccc
Q 045037 240 CGDTFTGPNKPSKPVLWTENWTARYRVFGDPPSRRSAENLAFSVARFFSKNGTLANYYMYYGGTNYGRL-GSSFVTTRYY 318 (832)
Q Consensus 240 ~~~~~~~~~~~~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~-g~~~~~TSYD 318 (832)
| +.|. +.++.+|+||||||+|||++||++++.|+++|++.+++++|++|+|++|||||||||||||| |+++++||||
T Consensus 239 ~-~~f~-~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYD 316 (840)
T PLN03059 239 C-ENFK-PNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYD 316 (840)
T ss_pred h-hhcc-cCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccc
Confidence 8 6776 56677899999999999999999999999999999999999999998899999999999999 9999999999
Q ss_pred CCCCCCccCCCCChhHHHHHHHHHHHHHhhhcccCCCCcccCCCCCcceeeeccCCccceeeeeccCCCCCCeeEEecCe
Q 045037 319 DEAPIDEYGMLREPKWGHLRDLHSALRLCKKALLSGKPSVENFGPNLEAHIYEQPKTKACVAFLSNNDSRTPATLTFRGS 398 (832)
Q Consensus 319 Y~Apl~E~G~~~tpKy~~lr~l~~~~~~~~~~l~~~~~~~~~~g~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~v~f~~~ 398 (832)
|||||+|+|++++|||.+||++|.+++.+++.|+..+|....+|+.+++++|+.. . .|++|+.|.++..+.+|+|+|+
T Consensus 317 YdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~-~-~caaFl~n~~~~~~~~v~f~g~ 394 (840)
T PLN03059 317 YDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSK-S-ACAAFLANYDTKYSVKVTFGNG 394 (840)
T ss_pred cCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCc-c-chhhheeccCCCCceeEEECCc
Confidence 9999999999855899999999999999988888888878889999999999833 3 7999999999888999999999
Q ss_pred eeecCCcceeecCCCccccccceeeeeccccceeeccccccccccccccccc-ccccccccccCCCccccccCCCCCccE
Q 045037 399 KYYLPQYSISILPDCKTVVYNTRMIVAQHSSRHYQKSKAANKDLRWEMFIED-IPTLNENLIKSASPLEQWSVTKDTTDY 477 (832)
Q Consensus 399 ~~~lp~~sv~il~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gy 477 (832)
+|.||+|||+|||||+.++|+|+++..|...++.. +.+ ..+.|+++.|+ .+...+.++....++||+++|+|.+||
T Consensus 395 ~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~--~~~-~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dY 471 (840)
T PLN03059 395 QYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMN--PVG-STFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDY 471 (840)
T ss_pred ccccCccceeecccccceeeeccccccccceeecc--ccc-ccccceeecccccccccCCCcchhhHHHhhcccCCCCce
Confidence 99999999999999999999999998776544221 111 34699999998 443345577788889999999999999
Q ss_pred EEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEeccCccc
Q 045037 478 LWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTIGLPD 557 (832)
Q Consensus 478 llYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN 557 (832)
+||+|+|....++..++.+.+++|++.+++|++||||||+++|+++++.....++++.++.++.|.|+|+||||||||+|
T Consensus 472 lwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~N 551 (840)
T PLN03059 472 LWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPN 551 (840)
T ss_pred EEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCc
Confidence 99999998876654456677889999999999999999999999998877777888888888889999999999999999
Q ss_pred cccccccccccee-EEEEcccccccccCccCccEEeecCCccccccccccCCCccccccccC-C-CCCceEEEEEEeCCC
Q 045037 558 SGVYLERRYAGTR-TVAIQGLNTGTLDVTYSEWGQKVGLDGEKFQVYTQEGSDRVKWNKTKG-L-GGPLTWYKTYFDAPE 634 (832)
Q Consensus 558 yG~~l~~~~KGI~-~V~l~g~~~g~~dL~~~~W~y~l~l~~e~~~~~~~~~~~~~~W~~~~~-~-~~~p~fYr~tF~i~~ 634 (832)
||++|+++.|||+ +|+|+|.+.|..||+++.|.|+++|+||.++++..+....++|...+. + .++|+|||++|++|+
T Consensus 552 yG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~ 631 (840)
T PLN03059 552 VGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPG 631 (840)
T ss_pred cCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCC
Confidence 9999999999999 999999888888999889999999999999988875555788976432 2 456999999999999
Q ss_pred CCCCeEEEeCCCceEEEEEcCeeeeecccccc--------------------CCCCCCceeeeccCcccccCCceeEEEE
Q 045037 635 GNDPLAIEVATMSKGMVWVNGKSIGRYWVSFL--------------------SPTGKPSQSVYHIPRAFLKPKDNLLAIF 694 (832)
Q Consensus 635 ~~d~~~Ld~~g~gKG~vwVNG~nLGRYW~~~~--------------------~~~gGPQqtlYhVP~~~Lk~G~N~IvVf 694 (832)
+.|||||||+|||||+|||||+||||||+... ..||||||+|||||++|||+|+|+||||
T Consensus 632 g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViF 711 (840)
T PLN03059 632 GNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVF 711 (840)
T ss_pred CCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEE
Confidence 99999999999999999999999999996411 2459999999999999999999999999
Q ss_pred EEcCCccccEEEEeeeccccccccccCCCcccccccccccceeecccccCCceEEeCCCCCeEEEEeeeccCCCCCccCC
Q 045037 695 EEIGGNIDGVQIVTVNRNTICSYIKESDPTRVNNRKREDIVIQKVFDDARRSATLMCPDNRKILRVEFASYGNPFGACGN 774 (832)
Q Consensus 695 E~~g~~~~~i~l~~~~~~~~c~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~YGr~~~~C~~ 774 (832)
||+|++|..|+|+++.++++|+.++|+| |++.+|++.+.. . .+.....++|+||.|++|++|.+|+||||.++|++
T Consensus 712 Ee~gg~p~~I~~~~~~~~~~c~~~~e~~-p~~~~w~~~~~~-~--~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~ 787 (840)
T PLN03059 712 EEWGGNPAGISLVKRTTDSVCADIFEGQ-PALKNWQIIASG-K--VNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGS 787 (840)
T ss_pred EecCCCCCceEEEEeecCcccccccccC-Cccccccccccc-c--ccccCCcEEEECCCCceEEEEEEecCCCCCCCCCC
Confidence 9999999999999999999999999999 569999995543 3 24778899999999999988999999999999999
Q ss_pred cccCceeCCChhHHHHhHcCCCCceeeeecCCCCCCCCCCCCCCcceEEEEEEee
Q 045037 775 YILGNCSAPSSKRIIEQYCLGKNRCAIPFDQNIFDRERKLCPNVPKNLAIQVQCG 829 (832)
Q Consensus 775 ~~~~~C~~~~s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC~gt~KyL~v~y~C~ 829 (832)
++.++|++++|+++|+++|+||++|+|.+++.+||+ |||+||+|||+|+|.|+
T Consensus 788 ~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~Fgg--DPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 788 FREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGG--DPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecC--CCCCCceeEEEEEEEeC
Confidence 999999999999999999999999999999999966 99999999999999995
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-151 Score=1281.63 Aligned_cols=628 Identities=52% Similarity=0.979 Sum_probs=578.3
Q ss_pred ceeEEEeCCeEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHH
Q 045037 28 KRSVTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKM 107 (832)
Q Consensus 28 ~~~v~~d~~~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~ 107 (832)
.+.|+||+++|++||+|++++||+|||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 045037 108 IGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENE 187 (832)
Q Consensus 108 a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 187 (832)
|+++||+||||+||||||||++||+|.||...|++.+||+|++|++++++|+++|++.++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999998888899999999999999999999999999999 799999999999999999
Q ss_pred cccchhccccccHHHHHHHHHHHHhcCCccceEEecccCCCCCcccccCCCCCCCCCCCCCCCCCCceeecccccccccc
Q 045037 188 YNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWVMCKQKDAPGPVINTCNGRNCGDTFTGPNKPSKPVLWTENWTARYRVF 267 (832)
Q Consensus 188 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~W 267 (832)
||.+...|++..+.|++|-..++...+.++||+||.+.|+++.++++|||++|.+.|..+++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999888887899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeecccCCCCCCCCCccccccCCCCCCccCCCCChhHHHHHHHHHHHHHh
Q 045037 268 GDPPSRRSAENLAFSVARFFSKNGTLANYYMYYGGTNYGRLGSSFVTTRYYDEAPIDEYGMLREPKWGHLRDLHSALRLC 347 (832)
Q Consensus 268 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~g~~~~~TSYDY~Apl~E~G~~~tpKy~~lr~l~~~~~~~ 347 (832)
|++++.|+++|++..|++|+++|+|++||||||||||||++.+++.+|||||||||+ |..++|||.|+|.+|..++.+
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999993399999999999999 999999999999999999999
Q ss_pred hhcccCCCCcccCCCCCcceeeeccCCccceeeeeccCCCCCCeeEEecCeeeecCCcceeecCCCccccccceeeeecc
Q 045037 348 KKALLSGKPSVENFGPNLEAHIYEQPKTKACVAFLSNNDSRTPATLTFRGSKYYLPQYSISILPDCKTVVYNTRMIVAQH 427 (832)
Q Consensus 348 ~~~l~~~~~~~~~~g~~~~~~~y~~~~~~~~~~fl~n~~~~~~~~v~f~~~~~~lp~~sv~il~~~~~~~~~t~~~~~~~ 427 (832)
++.+..+++...++++.+ ..|+.|+.|.++...+.+.|++..|.+|+|+++|+|+|++++|+|+++..
T Consensus 333 ep~lv~gd~~~~kyg~~~----------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~-- 400 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR----------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA-- 400 (649)
T ss_pred CccccccCcccccccchh----------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc--
Confidence 998888886655555443 35899999999888899999999999999999999999999999987532
Q ss_pred ccceeecccccccccccccccccccccccccccCCCccccccCCCCCccEEEEEEeecCCCCCccccCCCCceEEeC-Cc
Q 045037 428 SSRHYQKSKAANKDLRWEMFIEDIPTLNENLIKSASPLEQWSVTKDTTDYLWHTTSISLDGFHLPLREKVLPVLRIA-SL 506 (832)
Q Consensus 428 ~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~-~~ 506 (832)
.|....|+++ +|..++ .+||++|+|.++.+.++ .+.|+|. ++
T Consensus 401 ---------------~~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd-------~t~~~i~ls~ 443 (649)
T KOG0496|consen 401 ---------------QWISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSD-------TTSLKIPLSL 443 (649)
T ss_pred ---------------ccccccCCCc------------cccccC---cceEEEEEEeeccccCC-------CceEeecccc
Confidence 2555555544 555555 68899999999876544 2568888 99
Q ss_pred ceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEeccCccccccccccccccee-EEEEcccccccccCc
Q 045037 507 GHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTIGLPDSGVYLERRYAGTR-TVAIQGLNTGTLDVT 585 (832)
Q Consensus 507 ~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvNyG~~l~~~~KGI~-~V~l~g~~~g~~dL~ 585 (832)
+|++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+ +|+|+|. +|++
T Consensus 444 g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~ 518 (649)
T KOG0496|consen 444 GHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLT 518 (649)
T ss_pred cceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccc
Confidence 99999999999999999987766777888888899999999999999999999 8899999999 9999987 5788
Q ss_pred cCccEEeecCCccccccccccCCCccccccccCC--CCCceEEEEEEeCCCCCCCeEEEeCCCceEEEEEcCeeeeeccc
Q 045037 586 YSEWGQKVGLDGEKFQVYTQEGSDRVKWNKTKGL--GGPLTWYKTYFDAPEGNDPLAIEVATMSKGMVWVNGKSIGRYWV 663 (832)
Q Consensus 586 ~~~W~y~l~l~~e~~~~~~~~~~~~~~W~~~~~~--~~~p~fYr~tF~i~~~~d~~~Ld~~g~gKG~vwVNG~nLGRYW~ 663 (832)
+++|.|+++|.+|...+|.++...+++|...... .+|.+||+ +|++|++.+||||||.|||||+|||||+||||||+
T Consensus 519 ~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~ 597 (649)
T KOG0496|consen 519 WTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWP 597 (649)
T ss_pred eeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccC
Confidence 8889999999999999999888788999865432 35778888 99999999999999999999999999999999999
Q ss_pred cccCCCCCCceeeeccCcccccCCceeEEEEEEcCCccccEEEEeeecccccccccc
Q 045037 664 SFLSPTGKPSQSVYHIPRAFLKPKDNLLAIFEEIGGNIDGVQIVTVNRNTICSYIKE 720 (832)
Q Consensus 664 ~~~~~~gGPQqtlYhVP~~~Lk~G~N~IvVfE~~g~~~~~i~l~~~~~~~~c~~~~e 720 (832)
++ |||+++| ||++|||++.|+||||||++++|..|+|+++.+..+|..+.|
T Consensus 598 ~~-----G~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 598 SF-----GPQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred CC-----CCceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 99 9977777 999999999999999999999999999999998889988765
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2e-89 Score=749.24 Aligned_cols=298 Identities=41% Similarity=0.764 Sum_probs=229.1
Q ss_pred eEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 37 SLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 37 ~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
+|+|||||++++|||+||||+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccc
Q 045037 117 LRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFR 196 (832)
Q Consensus 117 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 196 (832)
|||||||||||++||+|.||++++++++|++||.|+++|++|+++|+++++ ++++++||||||+|||||||.. +
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----~ 154 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----G 154 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT----S
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC----c
Confidence 999999999999999999999999999999999999999999999999999 5899999999999999999943 3
Q ss_pred cccHHHHHHHHHHHHhcCCc-cceEEecccC--------CCCCcccccCCCCCCCC----CC--CCCCCCCCceeecccc
Q 045037 197 ELGTRYVHWAGTMAVRLNTG-VPWVMCKQKD--------APGPVINTCNGRNCGDT----FT--GPNKPSKPVLWTENWT 261 (832)
Q Consensus 197 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~t~ng~~~~~~----~~--~~~~~~~P~~~~E~~~ 261 (832)
++++||+.|++++++.|++ +++++++... .++..+.+++++.|.+. |. ...+|++|+|++|||+
T Consensus 155 -~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 155 -TDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp -S-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred -ccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 8899999999999999998 6677776421 12222334444555332 10 1346889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeecccCCCCC-CCCCc----cccccCCCCCCccCCCCChhHHH
Q 045037 262 ARYRVFGDPPSRRSAENLAFSVARFFSKNGTLANYYMYYGGTNYGRL-GSSFV----TTRYYDEAPIDEYGMLREPKWGH 336 (832)
Q Consensus 262 Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~-g~~~~----~TSYDY~Apl~E~G~~~tpKy~~ 336 (832)
|||++||++++.+++++++.++++++++|.+ +||||||||||||++ |++.. +|||||+|||+|+|++ ||||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999 55443 5999999999999997 799999
Q ss_pred HHHHHHH
Q 045037 337 LRDLHSA 343 (832)
Q Consensus 337 lr~l~~~ 343 (832)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=383.71 Aligned_cols=289 Identities=24% Similarity=0.316 Sum_probs=216.4
Q ss_pred EEEeCCeEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEE-ceeCCccCCCCCeeeeecchhHHHHHHHHH
Q 045037 31 VTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQT-YVFWNIHEPEKGQFNFEGNYNLTKFIKMIG 109 (832)
Q Consensus 31 v~~d~~~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~ 109 (832)
|.+++..+++||+|++++||++||+|||++.|.|||+|||++|+|+|++ |+.||+|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 77888 899999
Q ss_pred hcCCEEEEeccc-cccccccCCCCCcccccCCCee---------ecCCChhhHHHHHHHHHHHHHHHHhcccccccCCce
Q 045037 110 DLGMYATLRVGP-FIEAEWNYGGFPFWLREVPNIT---------FRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPI 179 (832)
Q Consensus 110 ~~gL~Vilr~GP-yicaEw~~GG~P~WL~~~p~~~---------~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 179 (832)
+.||+||||||| ..|.+|..+++|+||..++.-. +..++|.|++++++++++|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 9999999999999998766522 33557789999988666666553 4789999
Q ss_pred EEeccccccccchhccccccHHHHHHHHHHHHhc-CCccceEEec-ccCCC-CCcccccC-----CCCCC-CCCCCCCCC
Q 045037 180 ILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRL-NTGVPWVMCK-QKDAP-GPVINTCN-----GRNCG-DTFTGPNKP 250 (832)
Q Consensus 180 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~t~n-----g~~~~-~~~~~~~~~ 250 (832)
|+||+|||||++.|.++.|.+.|..||++.+-.. .+..+|=+.. ..+.. ...+.+.+ ..... -+|. .+..
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~-~f~~ 231 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYR-RFES 231 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHh-hhhh
Confidence 9999999999965566678999999999988421 1222332211 00000 00111111 00000 0111 1222
Q ss_pred CC----Cceeeccccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCeeeeeeEeecccCCC------CC-CCC---C--
Q 045037 251 SK----PVLWTENWTARY-RVFGDPPSRRS-AENLAFSVARFFSKNGTLANYYMYYGGTNYG------RL-GSS---F-- 312 (832)
Q Consensus 251 ~~----P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~-g~~---~-- 312 (832)
.+ +....|.|-+|| +.|..+.-... .+.-.+.+++.|....+ -||||||+|++|+ +. |+. +
T Consensus 232 e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 232 EQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 33 566778888999 77776554443 33334566677777655 6999999999999 55 443 2
Q ss_pred -----ccccccCCCCCCccCCC
Q 045037 313 -----VTTRYYDEAPIDEYGML 329 (832)
Q Consensus 313 -----~~TSYDY~Apl~E~G~~ 329 (832)
..|+|++++.+.+.|..
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred ccCCcchhhhhhccCCCCCccc
Confidence 58999999999999984
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=5.8e-21 Score=214.45 Aligned_cols=144 Identities=21% Similarity=0.369 Sum_probs=113.4
Q ss_pred EEeCCCCChhhHHHHHHHHHHcCCCEEEE-ceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccC
Q 045037 51 SIHYPRMPPEMWWDILKKAKAGGLNVIQT-YVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNY 129 (832)
Q Consensus 51 ~~hy~r~~~~~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~ 129 (832)
+++|.+++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||+.. .
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------c
Confidence 36788899999999999999999999997 56799999999999999 899999999999999999974 6
Q ss_pred CCCCccccc-CCCeee----------------cCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccch
Q 045037 130 GGFPFWLRE-VPNITF----------------RSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQ 192 (832)
Q Consensus 130 GG~P~WL~~-~p~~~~----------------R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~ 192 (832)
+..|.||.+ +|++.. ..++|.|++++++++++|+++++. ...||+|||+||+|...
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~ 142 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHR 142 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCc
Confidence 779999976 687632 245789999999999999998874 45799999999998743
Q ss_pred hccccccHHHHHHHHHHHHh
Q 045037 193 LAFRELGTRYVHWAGTMAVR 212 (832)
Q Consensus 193 ~~~~~~~~~y~~~l~~~~~~ 212 (832)
+.+..+.++|.+||+++|..
T Consensus 143 ~~~~~~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGT 162 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 32335788999999999863
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.77 E-value=2e-19 Score=158.65 Aligned_cols=76 Identities=34% Similarity=0.755 Sum_probs=60.7
Q ss_pred EeCCCCCeEEEEeeeccCCCC-CccCCc---ccCceeCCChhHHHHhHcCCCCceeeeecCCCCCCCCCCCCCCcceEEE
Q 045037 749 LMCPDNRKILRVEFASYGNPF-GACGNY---ILGNCSAPSSKRIIEQYCLGKNRCAIPFDQNIFDRERKLCPNVPKNLAI 824 (832)
Q Consensus 749 L~C~~g~~I~~I~~A~YGr~~-~~C~~~---~~~~C~~~~s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC~gt~KyL~v 824 (832)
|+||+|++| .|.+|+|||+. .+|++. ..++|+++.++++|+++|+||++|+|.+++.+|| |||+||+|||+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~---dpC~~~~KyL~V 76 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG---DPCPGTSKYLEV 76 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH-----SSTTS--EEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC---CCCCCCCeEEEE
Confidence 799999766 69999999975 589743 2467999999999999999999999999999998 999999999999
Q ss_pred EEEe
Q 045037 825 QVQC 828 (832)
Q Consensus 825 ~y~C 828 (832)
+|+|
T Consensus 77 ~Y~C 80 (80)
T PF02140_consen 77 TYTC 80 (80)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.77 E-value=5.1e-19 Score=182.67 Aligned_cols=88 Identities=28% Similarity=0.491 Sum_probs=80.6
Q ss_pred ccCCceEEeCCCCCeEEEEeeeccCCC-CCccCC----cccCceeCCChhHHHHhHcCCCCceeeeecCCCCCCCCCCCC
Q 045037 742 DARRSATLMCPDNRKILRVEFASYGNP-FGACGN----YILGNCSAPSSKRIIEQYCLGKNRCAIPFDQNIFDRERKLCP 816 (832)
Q Consensus 742 ~~~~~~~L~C~~g~~I~~I~~A~YGr~-~~~C~~----~~~~~C~~~~s~~~v~~~C~Gk~~C~v~a~~~~Fg~~~DPC~ 816 (832)
|+|..++|+||.|.+|+ |+.|+|||. ...|.+ .-..+|..+.|++++.++|++|+.|.|.|..++||+ ||||
T Consensus 41 CdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~--DPCP 117 (265)
T KOG4729|consen 41 CDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGD--DPCP 117 (265)
T ss_pred ecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCC--CCCC
Confidence 99999999999999985 999999995 468953 225799999999999999999999999999999997 9999
Q ss_pred CCcceEEEEEEeecCC
Q 045037 817 NVPKNLAIQVQCGENK 832 (832)
Q Consensus 817 gt~KyL~v~y~C~~~~ 832 (832)
||+|||+|+|.|++++
T Consensus 118 gT~KYLev~Y~Cvp~~ 133 (265)
T KOG4729|consen 118 GTSKYLEVQYGCVPYA 133 (265)
T ss_pred CchhheEEEeccCccc
Confidence 9999999999999863
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.12 E-value=3.1e-09 Score=116.08 Aligned_cols=151 Identities=21% Similarity=0.297 Sum_probs=106.6
Q ss_pred EEEeCCeEEECCEEeEEEEEEEeCCC------CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHH
Q 045037 31 VTYDGRSLIINGKRELFFSGSIHYPR------MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKF 104 (832)
Q Consensus 31 v~~d~~~~~~dG~p~~~~sG~~hy~r------~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~f 104 (832)
|++.++.|+|||||+++-|...|... ++++.|+.+|++||++|+|+|++ .|-|. =.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999644 48899999999999999999999 34443 1689
Q ss_pred HHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 045037 105 IKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQV 184 (832)
Q Consensus 105 l~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (832)
+++|.++||.|+--+. ..+.-.|-... .......+|.+.+.+.+-+++++.+.+.| ..||+|=+
T Consensus 65 ~~~cD~~GilV~~e~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-------PSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP--------LEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNH-------PSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT--------TTEEEEEE
T ss_pred HHHHhhcCCEEEEecc--------ccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCc-------Cchheeec
Confidence 9999999999986652 21222222111 11245678999998888888888877654 57999999
Q ss_pred ccccccchhccccccHHHHHHHHHHHHhcCCccceEEe
Q 045037 185 ENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWVMC 222 (832)
Q Consensus 185 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 222 (832)
-||-. ...+++.|.+++++..-+=|....
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeec
Confidence 99983 246788888989887766565443
No 9
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.03 E-value=4.5e-10 Score=105.45 Aligned_cols=69 Identities=26% Similarity=0.633 Sum_probs=51.9
Q ss_pred CCCceEEEEEEeCCCCCCCeE-EEe--CCCceEEEEEcCeeeeeccccccCCCCCCceeeeccCcccccCCceeEEEE
Q 045037 620 GGPLTWYKTYFDAPEGNDPLA-IEV--ATMSKGMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIPRAFLKPKDNLLAIF 694 (832)
Q Consensus 620 ~~~p~fYr~tF~i~~~~d~~~-Ld~--~g~gKG~vwVNG~nLGRYW~~~~~~~gGPQqtlYhVP~~~Lk~G~N~IvVf 694 (832)
..+..|||++|........+. |+. ....+++|||||++|||||+.+ |||++++ ||+.+|+.+.|.|+|+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEEE-E-BTTBTTCEEEEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEEE-eCceeecCCCEEEEEE
Confidence 457899999996532221223 333 4578899999999999999888 9999999 9999999875565554
No 10
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.94 E-value=1.9e-07 Score=111.76 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=111.4
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEEeCCC------CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSGSIHYPR------MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLT 102 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG~~hy~r------~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 102 (832)
++|++++..|+|||+|+++-+...|... ++++.|+.+|++||++|+|+|++. |-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCC-----------CH
Confidence 5688999999999999999998888442 578889999999999999999992 4442 15
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCcccc-------c-CCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccc
Q 045037 103 KFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR-------E-VPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYAS 174 (832)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~ 174 (832)
+|+++|-++||+|+--.. .-|+..|+. + .+....-..+|.+.++..+-+++++++.+
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~------- 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK------- 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------
Confidence 899999999999987642 112222221 1 11111123456677766666666666554
Q ss_pred cCCceEEeccccccccchhccccccHHHHHHHHHHHHhcCCccceEEe
Q 045037 175 QGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWVMC 222 (832)
Q Consensus 175 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 222 (832)
|...||||-|-||-... ......|++.|.+.+++..-+=|....
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 55689999999997532 113456778888888887766554443
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.72 E-value=1.6e-07 Score=100.27 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=107.1
Q ss_pred CCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccC-CCCCe-eeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 41 NGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHE-PEKGQ-FNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 41 dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
+|+++.+.+-+.|+.. +..-++.+++||++|+|+|++.+.|...+ |.++. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6999999999999322 12778999999999999999999995444 67764 66566679999999999999999987
Q ss_pred ccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhc----
Q 045037 119 VGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLA---- 194 (832)
Q Consensus 119 ~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~---- 194 (832)
.=. .|.|....... ...+...+....+.+.|+++++ +..+|++++|=||.......
T Consensus 82 ~h~----------~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LHN----------APGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EEE----------STTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ecc----------Ccccccccccc---ccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCccccc
Confidence 521 27774322111 1122233344445555666554 34579999999998764210
Q ss_pred cc--cccHHHHHHHHHHHHhcCCccceEEe
Q 045037 195 FR--ELGTRYVHWAGTMAVRLNTGVPWVMC 222 (832)
Q Consensus 195 ~~--~~~~~y~~~l~~~~~~~g~~vp~~~~ 222 (832)
.. ..-.++.+.+.+.+|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 00 01134556666677888877665554
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.60 E-value=1e-06 Score=110.89 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=102.9
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEEeCC------CCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSGSIHYP------RMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLT 102 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG~~hy~------r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 102 (832)
++|++++..|+|||+|+++-+...|.. .++++.|+.+|+.||++|+|+|++- |-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCS-----HYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------H
Confidence 467888899999999999999998832 3689999999999999999999992 44421 5
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCC-CcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 045037 103 KFIKMIGDLGMYATLRVGPFIEAEWNYGGF-PFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIIL 181 (832)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~ 181 (832)
+|+++|-++||+|+--.. . | .-|+ |. . .-.+||.|.+++.+=+++++.+.+ |...|||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e--~hg~~~~---~-----~~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~ 456 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E--THGMVPM---N-----RLSDDPRWLPAMSERVTRMVQRDR-------NHPSIII 456 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c--ccCCccc---c-----CCCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEE
Confidence 889999999999997752 1 1 1111 11 0 014567777766554555555544 5678999
Q ss_pred eccccccccchhccccccHHHHHHHHHHHHhcCCccceEE
Q 045037 182 SQVENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWVM 221 (832)
Q Consensus 182 ~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 221 (832)
|=+-||-|. + .....+.+.+++..-+=|...
T Consensus 457 WSlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y 487 (1027)
T PRK09525 457 WSLGNESGH-----G----ANHDALYRWIKSNDPSRPVQY 487 (1027)
T ss_pred EeCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEE
Confidence 999999763 2 123455666666555545443
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.50 E-value=7.4e-07 Score=83.75 Aligned_cols=84 Identities=24% Similarity=0.256 Sum_probs=57.2
Q ss_pred cccccCCCCCccEEEEEEeecCCCCCccccCCCCce-EEe-CCcceEEEEEECCEEEEEEecc-CCCceeEEeeccccCC
Q 045037 465 LEQWSVTKDTTDYLWHTTSISLDGFHLPLREKVLPV-LRI-ASLGHMMHGFVNGHYIGSGHGT-NKENSFVFQKPIILKP 541 (832)
Q Consensus 465 ~Eql~~t~d~~GyllYrT~i~~~~~~~~~~~~~~~~-L~v-~~~~D~a~VfVng~~vG~~~~~-~~~~~~~~~~~~~l~~ 541 (832)
.+..+..++..|++|||++|...+.+ .... |.+ .+.+.+++|||||+++|..... ..+..+.++..+ |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~------~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD------TSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE------EEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc------eeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecC
Confidence 45555666789999999999754322 1223 344 5789999999999999998832 223334444333 566
Q ss_pred CccEEEEEEeccCc
Q 045037 542 GINHISLLGVTIGL 555 (832)
Q Consensus 542 g~~~L~ILvEn~Gr 555 (832)
+.++|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.46 E-value=2.1e-06 Score=108.14 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=103.1
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEEeCCC------CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSGSIHYPR------MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLT 102 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG~~hy~r------~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 102 (832)
++|++++..|+|||+|+++-|...|... ++++.|+.+|+.||++|+|+|++- |-|. =.
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~-----------~~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPN-----------DP 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCC-----------CH
Confidence 5688889999999999999999888332 478999999999999999999983 4443 15
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 045037 103 KFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILS 182 (832)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 182 (832)
+|+++|-++||+|+--. |..|..|.. . .+...-+++|.|.++..+=+++++.+.+ |...||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~-------~--~~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFAN-------V--GDISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccc-------c--cccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEE
Confidence 89999999999999765 222222211 0 0111124677776654444455555544 56789999
Q ss_pred ccccccccchhccccccHHHHHHHHHHHHhcCCccce
Q 045037 183 QVENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPW 219 (832)
Q Consensus 183 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~ 219 (832)
=+-||-+. + . .+..+.+.+++..-+=|.
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v 472 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLV 472 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceE
Confidence 99999763 2 1 235666777776655443
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=2.3e-06 Score=104.32 Aligned_cols=135 Identities=21% Similarity=0.289 Sum_probs=104.5
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEEeCCC-----C-ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSGSIHYPR-----M-PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLT 102 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG~~hy~r-----~-~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~ 102 (832)
++|++++..|.|||||+++-|..-|.+- . .++.-+++|++||++|+|+|+|- |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 5799999999999999999999999655 3 55558999999999999999996 66653 6
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 045037 103 KFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILS 182 (832)
Q Consensus 103 ~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 182 (832)
.|+++|-++||+||--+ ..||-. .| +||.|++.+..=+++++++.+. ...||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~kn-------HPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRN-------HPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccC-------CCcEEEE
Confidence 79999999999999885 123322 22 7888988887777777777664 4679999
Q ss_pred ccccccccchhccccccHHHHHHHHHHH
Q 045037 183 QVENEYNTIQLAFRELGTRYVHWAGTMA 210 (832)
Q Consensus 183 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 210 (832)
=+.||-|. |.....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999874 333444445655543
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.04 E-value=1.3e-05 Score=85.88 Aligned_cols=116 Identities=22% Similarity=0.391 Sum_probs=86.8
Q ss_pred CCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHH
Q 045037 83 WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMI 162 (832)
Q Consensus 83 Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l 162 (832)
|...||++|+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 8999999999999998 333222 433 6899997533 335578888898888
Q ss_pred HHHHHhcccccccCCceEEeccccccccch-------hccccccHHHHHHHHHHHHhcCCccceEEec
Q 045037 163 IDMMKDAQLYASQGGPIILSQVENEYNTIQ-------LAFRELGTRYVHWAGTMAVRLNTGVPWVMCK 223 (832)
Q Consensus 163 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 223 (832)
+.+++ |.|..|+|=||--+.. ..+...+.+|+...-+.+++...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88775 5689999999953211 0111234578888888888888888888765
No 17
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.96 E-value=6.7e-05 Score=74.72 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=68.8
Q ss_pred CCCccEEEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCc-cEEEEEE
Q 045037 472 KDTTDYLWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGI-NHISLLG 550 (832)
Q Consensus 472 ~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 550 (832)
....|+.|||++|.++... .+....|.++++.+.+.|||||++||...... ..+.++++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 3468999999999876432 24567888999999999999999999976533 246666666688887 9999999
Q ss_pred eccCcccccccc-ccccccee-EEEEc
Q 045037 551 VTIGLPDSGVYL-ERRYAGTR-TVAIQ 575 (832)
Q Consensus 551 En~GrvNyG~~l-~~~~KGI~-~V~l~ 575 (832)
.+...-.+-+.+ .....||. +|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865443331111 12457998 88873
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.91 E-value=0.0002 Score=78.07 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=84.0
Q ss_pred eeEEEeCCeEE--ECCEEeEEEEEEEeCCCC-----------ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeee
Q 045037 29 RSVTYDGRSLI--INGKRELFFSGSIHYPRM-----------PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNF 95 (832)
Q Consensus 29 ~~v~~d~~~~~--~dG~p~~~~sG~~hy~r~-----------~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF 95 (832)
..|++.++.|+ .+|++|+|-+-.+.+--. .++.|+.++..||++|+|||++|- -
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~-------------v 75 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS-------------V 75 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---------------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE-------------e
Confidence 45889999999 799999999877765332 568899999999999999999994 1
Q ss_pred ecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCCh--hhH-HHHHHHHHHHHHHHHhcccc
Q 045037 96 EGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNP--PFK-YHMKEFTKMIIDMMKDAQLY 172 (832)
Q Consensus 96 ~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p--~y~-~~~~~~~~~l~~~l~~~~~~ 172 (832)
+-..|=+.++++.+++||||||--+. |...+-.++| .|- ...++|+ ++++.++.+
T Consensus 76 dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~Y--- 133 (314)
T PF03198_consen 76 DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYF-AVIDAFAKY--- 133 (314)
T ss_dssp -TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHH-HHHHHHTT----
T ss_pred CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHH-HHHHHhccC---
Confidence 22247789999999999999998642 2223444455 443 2333333 445555543
Q ss_pred cccCCceEEeccccccccchhcc--ccccHHHHHHHHHHHHhcCC-ccce
Q 045037 173 ASQGGPIILSQVENEYNTIQLAF--RELGTRYVHWAGTMAVRLNT-GVPW 219 (832)
Q Consensus 173 ~~~gGpII~~QiENEyg~~~~~~--~~~~~~y~~~l~~~~~~~g~-~vp~ 219 (832)
.++++.=+-||.-+....- ..+-|+..+.+|+-+++.+. .+|+
T Consensus 134 ----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4799999999986431100 11334455555555556555 4564
No 19
>PLN02705 beta-amylase
Probab=97.70 E-value=0.00013 Score=84.42 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=64.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 5567888999999999999999999999998 799999995 78889999999999 55665 22433 112
Q ss_pred -CCCccccc----CCCee
Q 045037 131 -GFPFWLRE----VPNIT 143 (832)
Q Consensus 131 -G~P~WL~~----~p~~~ 143 (832)
-||.|+.. +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999985 47764
No 20
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.68 E-value=0.00072 Score=74.05 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=110.8
Q ss_pred CCeEE-ECCEEeEEEEEEEeC---CCCChhhHHHHHHHHHHcCCCEEEEcee--CCcc--------CC----CCCeeeee
Q 045037 35 GRSLI-INGKRELFFSGSIHY---PRMPPEMWWDILKKAKAGGLNVIQTYVF--WNIH--------EP----EKGQFNFE 96 (832)
Q Consensus 35 ~~~~~-~dG~p~~~~sG~~hy---~r~~~~~W~d~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~fdF~ 96 (832)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++=|+ |.-+ .| .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 35566 7999999998 5444 3568899999999999999999999876 4422 12 12237776
Q ss_pred cc-----hhHHHHHHHHHhcCCEEEEec---cccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 97 GN-----YNLTKFIKMIGDLGMYATLRV---GPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 97 g~-----~dl~~fl~~a~~~gL~Vilr~---GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
.- ..+++.|+.|++.||.+-|-| +||.-.-|-+| | ..| =.+.+++|.+-|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 43 489999999999999965433 34443344333 1 111 147788999999999985
Q ss_pred cccccccCCceEEeccccccccchhccccccHHHHHHHHHHHHhcCCccceE-Eeccc-CCC-----CCcc--cccC-CC
Q 045037 169 AQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRLNTGVPWV-MCKQK-DAP-----GPVI--NTCN-GR 238 (832)
Q Consensus 169 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~-~~~~~-~~~-----~~~~--~t~n-g~ 238 (832)
.+ +|| |=|-||+. ......++-+.+.+.+++..-.-+.. +..+. ..+ .+-+ .... |.
T Consensus 145 ~~-------Nvi-W~l~gd~~-----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDYF-----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCccC-----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 32 455 66889991 12356677778888777754322322 22211 010 0001 1111 21
Q ss_pred CCCC--CCC-------CCCCCCCCceeec-cccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 045037 239 NCGD--TFT-------GPNKPSKPVLWTE-NWTARYRVFGDPPSRRSAENLAFSVARFFSKNG 291 (832)
Q Consensus 239 ~~~~--~~~-------~~~~~~~P~~~~E-~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 291 (832)
...+ .+. -...|.+|.+..| .|.|--..+.+.....+++++...+=.-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 1100 000 0346899999999 445544333333334577887765433333454
No 21
>PLN02905 beta-amylase
Probab=97.66 E-value=0.00019 Score=83.51 Aligned_cols=80 Identities=21% Similarity=0.484 Sum_probs=63.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4455778999999999999999999999998 899999995 78889999999999 55665 22332 112
Q ss_pred -CCCccccc----CCCee
Q 045037 131 -GFPFWLRE----VPNIT 143 (832)
Q Consensus 131 -G~P~WL~~----~p~~~ 143 (832)
-||.|+.+ +|+|.
T Consensus 358 IPLP~WV~e~g~~nPDif 375 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIF 375 (702)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 28999975 57774
No 22
>PLN02801 beta-amylase
Probab=97.62 E-value=0.00022 Score=81.65 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=64.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5667889999999999999999999999998 699999995 78889999999999 45665 22322 111
Q ss_pred -CCCccccc----CCCee
Q 045037 131 -GFPFWLRE----VPNIT 143 (832)
Q Consensus 131 -G~P~WL~~----~p~~~ 143 (832)
-||.|+.+ +|++.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 57763
No 23
>TIGR03356 BGL beta-galactosidase.
Probab=97.57 E-value=0.00018 Score=82.95 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++|++||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+--=. =.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 568999999999999999999999999999 78999888889999999999999998765321 248999976
Q ss_pred CCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 139 VPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 139 ~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
..+- .++...++-.+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5442 235556666667677777665
No 24
>PLN02803 beta-amylase
Probab=97.56 E-value=0.00032 Score=80.64 Aligned_cols=81 Identities=20% Similarity=0.481 Sum_probs=63.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 599999995 78889999999999 45665 22332 111
Q ss_pred -CCCccccc----CCCeee
Q 045037 131 -GFPFWLRE----VPNITF 144 (832)
Q Consensus 131 -G~P~WL~~----~p~~~~ 144 (832)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 28999975 577743
No 25
>PLN00197 beta-amylase; Provisional
Probab=97.54 E-value=0.00034 Score=80.71 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=64.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5667889999999999999999999999998 899999995 77889999999999 55665 22332 112
Q ss_pred -CCCccccc----CCCee
Q 045037 131 -GFPFWLRE----VPNIT 143 (832)
Q Consensus 131 -G~P~WL~~----~p~~~ 143 (832)
-||.|+.+ +|++.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999975 57774
No 26
>PLN02161 beta-amylase
Probab=97.49 E-value=0.00051 Score=78.66 Aligned_cols=81 Identities=23% Similarity=0.458 Sum_probs=64.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-CCCeeeeecchhHHHHHHHHHhcCCE--EEEeccccccccccCC----
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-EKGQFNFEGNYNLTKFIKMIGDLGMY--ATLRVGPFIEAEWNYG---- 130 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr~GPyicaEw~~G---- 130 (832)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++++++||+ |||.+ --|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 4556778999999999999999999999998 899999995 78889999999999 45654 22322 112
Q ss_pred -CCCccccc----CCCeee
Q 045037 131 -GFPFWLRE----VPNITF 144 (832)
Q Consensus 131 -G~P~WL~~----~p~~~~ 144 (832)
-||.|+.+ +|++.+
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999975 577743
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.30 E-value=0.00041 Score=78.07 Aligned_cols=112 Identities=20% Similarity=0.321 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEE--Eeccccccc----cccCCCCC
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYAT--LRVGPFIEA----EWNYGGFP 133 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vi--lr~GPyica----Ew~~GG~P 133 (832)
.-+..|+++|++|+..|.+.|.|...|.. |++|||+ -..++.++++++||++. |.+ --|+ ..-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 45678999999999999999999999997 9999999 47889999999999954 544 2231 11111389
Q ss_pred ccccc---CCCeeecCC--------------ChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 045037 134 FWLRE---VPNITFRSD--------------NPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQV 184 (832)
Q Consensus 134 ~WL~~---~p~~~~R~~--------------~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 184 (832)
.|+.. ..+|.+... ... ++.-+.|++.....+++ +. +-|..+||
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEe
Confidence 99974 235532111 112 55556666666666663 21 67888877
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.17 E-value=0.0009 Score=74.34 Aligned_cols=157 Identities=20% Similarity=0.290 Sum_probs=108.7
Q ss_pred EEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEc--eeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEecccccc
Q 045037 47 FFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTY--VFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 47 ~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
.+|..++..++..+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ .
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 789999988876552 3334445679999875 5599999999999999 89999999999999865332 1
Q ss_pred ccccCCCCCcccccCCCeeecCC-ChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchh---------c
Q 045037 125 AEWNYGGFPFWLREVPNITFRSD-NPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQL---------A 194 (832)
Q Consensus 125 aEw~~GG~P~WL~~~p~~~~R~~-~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 194 (832)
=|.. ..|.|+...+.. ... .+..++.++++++.++.+++. -|.|.+|-|=||-=.... .
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999864110 000 123788899999999888762 189999999999532210 1
Q ss_pred cccccHHHHHHHHHHHHhcCCccceEEecc
Q 045037 195 FRELGTRYVHWAGTMAVRLNTGVPWVMCKQ 224 (832)
Q Consensus 195 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 224 (832)
+...+.+|+...-+.+++...++.||.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 222346788888888888888888998873
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0023 Score=69.76 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=98.4
Q ss_pred HHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCC
Q 045037 69 AKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDN 148 (832)
Q Consensus 69 ~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~ 148 (832)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|++.+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4454444444556699999999999999 6799999999999954 433333 433 6899997632 234
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccc----cch---hccccccHHHHHHHHHHHHhcCCccceEE
Q 045037 149 PPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYN----TIQ---LAFRELGTRYVHWAGTMAVRLNTGVPWVM 221 (832)
Q Consensus 149 p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg----~~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 221 (832)
+...+.+++++..++.+++ |-|+.|-|=||-= ++. +..+-.+.+|+++.-+.+++.+-+.-|+.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999987 4599999999952 221 12223577899999999999887777887
Q ss_pred ecc
Q 045037 222 CKQ 224 (832)
Q Consensus 222 ~~~ 224 (832)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 653
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.75 E-value=0.029 Score=56.66 Aligned_cols=135 Identities=13% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEceeCCccC-----CC---CCeeeeecchhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 55 PRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHE-----PE---KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 55 ~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
-.+.++.|+.+|+.||++|+|+|=+- |.-.+ |. ++.|.-.....|+.+|++|++.||+|++.-+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 47899999999999999999999432 22111 11 2223333445899999999999999998863 1
Q ss_pred ccCCCCCcccccCCCeeecCCChhh-HHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHHHH
Q 045037 127 WNYGGFPFWLREVPNITFRSDNPPF-KYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHW 205 (832)
Q Consensus 127 w~~GG~P~WL~~~p~~~~R~~~p~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 205 (832)
-|.|-.+ .|+.. .+..++..++|.+. +++....-+|=|-.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~-------yg~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQR-------YGHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHH-------HcCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 2333331 22222 12222333334333 34455788898989987542 133455566
Q ss_pred HHHHHHhcCCccceE
Q 045037 206 AGTMAVRLNTGVPWV 220 (832)
Q Consensus 206 l~~~~~~~g~~vp~~ 220 (832)
|.+.+++.--+.|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 655555432234433
No 31
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.60 E-value=0.004 Score=61.95 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=49.9
Q ss_pred CCCceEEEEEEeCCCCC--CCeEEEeCCC-ceEEEEEcCeeeeeccccccCCCCCCceeeeccCcccccCCc-eeEEEE
Q 045037 620 GGPLTWYKTYFDAPEGN--DPLAIEVATM-SKGMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIPRAFLKPKD-NLLAIF 694 (832)
Q Consensus 620 ~~~p~fYr~tF~i~~~~--d~~~Ld~~g~-gKG~vwVNG~nLGRYW~~~~~~~gGPQqtlYhVP~~~Lk~G~-N~IvVf 694 (832)
..+..|||.+|++|+.. ..++|.+.|. ....|||||+.+|+-.. +-...-+-|+ +.|+.|+ |+|.|.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-------~~~~~~~dIt-~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-------GYTPFEFDIT-DYLKPGEENTLAVR 136 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-------TTS-EEEECG-GGSSSEEEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-------CcCCeEEeCh-hhccCCCCEEEEEE
Confidence 34679999999999643 3578999885 48999999999999652 2223334475 4788888 988875
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.46 E-value=0.0012 Score=76.75 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..|+++|+.||++|+|+.+.-+.|.-.+|. +|++|-+|-...+++|+.+.++||..|+-- ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999998899999999999999966553 2346899998
Q ss_pred cCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 138 EVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 138 ~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
+.-+- .++...+.-.+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 64332 2355566666677777777753
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.27 E-value=0.012 Score=65.55 Aligned_cols=104 Identities=24% Similarity=0.400 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCC-CeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCC
Q 045037 63 WDILKKAKAGGLNVIQTYVFWNIHEPEK-GQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPN 141 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~ 141 (832)
+|.|+.||+.|+|.|+.=| |+ .|.. |..|.+ +..+..+.|+++||+|+|-+- |. -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5889999999999999988 44 5555 666666 677777788899999999874 21 1233 232
Q ss_pred ee-----ecC-CChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc
Q 045037 142 IT-----FRS-DNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNT 190 (832)
Q Consensus 142 ~~-----~R~-~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 190 (832)
-+ -+. +-....++|..|...++..|+. +|-.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 21 111 3345678999999999999984 4667889999999753
No 34
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.018 Score=66.19 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=70.8
Q ss_pred ChhhH-----HHHHHHHHHcCCCEEEEceeCCccCCCC----CeeeeecchhHHHHHHHHHhcCCEEEEeccccccccc-
Q 045037 58 PPEMW-----WDILKKAKAGGLNVIQTYVFWNIHEPEK----GQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEW- 127 (832)
Q Consensus 58 ~~~~W-----~d~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw- 127 (832)
...-| ++.+..||.+|||+||+++.|..+++.. ...+=+--..|++.|+-|++.||+|+|-.-=| +.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~ 142 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGG 142 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCC
Confidence 55568 8999999999999999999944436643 22212212378999999999999999884211 00
Q ss_pred cCCCCCccccc-CCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc
Q 045037 128 NYGGFPFWLRE-VPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNT 190 (832)
Q Consensus 128 ~~GG~P~WL~~-~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 190 (832)
.++-=..|... ... ....+++-.+..+.|+.+. ++.-.||++|+=||--.
T Consensus 143 ~~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f-------~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKE------ENENVEATIDIWKFIANRF-------KNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccc------cchhHHHHHHHHHHHHHhc-------cCCCceeeeeeecCCcc
Confidence 01111233322 111 1112233333334444444 44678999999999863
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.00 E-value=0.036 Score=66.87 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=56.0
Q ss_pred CccEEEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCc-cEEEEEEec
Q 045037 474 TTDYLWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGI-NHISLLGVT 552 (832)
Q Consensus 474 ~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn 552 (832)
..|..|||++|.++.. +.+....|.+.++.-.+.|||||++||.-.+.. ..+.++++-.|+.|. |+|.|.|.|
T Consensus 63 ~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~n 136 (604)
T PRK10150 63 YVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVNN 136 (604)
T ss_pred CcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEec
Confidence 5788999999988642 224567899999999999999999999866432 345566544466675 599999977
Q ss_pred c
Q 045037 553 I 553 (832)
Q Consensus 553 ~ 553 (832)
.
T Consensus 137 ~ 137 (604)
T PRK10150 137 E 137 (604)
T ss_pred C
Confidence 4
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=95.99 E-value=0.007 Score=70.75 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..|+++++.||++|+|+.++-+.|.-.+|. ++++|=+|-...+++|+.+.++||..++-- .-=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447999999999999999999999999997 556777787899999999999999976553 1235899997
Q ss_pred cC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
.. -+- .++...++-.+|.+.++++++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 234444444455555555544
No 37
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.92 E-value=0.008 Score=70.35 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..|+++|+.||++|+|+-++-+-|.-.+|. +|++|=+|-...+++|+.+.++||..++-- --=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 358999999999999999999999999997 567888888899999999999999977653 1224899997
Q ss_pred cC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
.. -+- .++...++-.+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 63 332 234445555556666666654
No 38
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.51 E-value=0.05 Score=69.38 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=64.4
Q ss_pred cEEEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEeccCc
Q 045037 476 DYLWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTIGL 555 (832)
Q Consensus 476 GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Gr 555 (832)
|--|||++|.++.. +.+.+..|.+.++...++|||||++||.-.+.. ..+.++++--|+.|.|+|.|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~----~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDG----WQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCcc----cccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC-
Confidence 56799999988643 224567899999999999999999999765432 23556654456778899999886432
Q ss_pred ccccccccc----ccccee-EEEEcc
Q 045037 556 PDSGVYLER----RYAGTR-TVAIQG 576 (832)
Q Consensus 556 vNyG~~l~~----~~KGI~-~V~l~g 576 (832)
.|..+++ ...||. +|.|.-
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~ 205 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVG 205 (1021)
T ss_pred --CCCccccCCccccccccceEEEEE
Confidence 2222322 236887 888743
No 39
>PLN02998 beta-glucosidase
Probab=95.49 E-value=0.015 Score=68.49 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|=+|-...+++|+.+.++||..++--= =| .+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 5778888989999999999999998654421 13 37999976
Q ss_pred C-CCeeecCCChhhHHHHHHHHHHHHHHH
Q 045037 139 V-PNITFRSDNPPFKYHMKEFTKMIIDMM 166 (832)
Q Consensus 139 ~-p~~~~R~~~p~y~~~~~~~~~~l~~~l 166 (832)
. -+-.=|..=..|.++++.-++++..++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 3 443112222344555554444444443
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.43 E-value=0.019 Score=67.21 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..|+++++.||++|+|+-++-|-|.-.+|. +|++|=+|-...+++|+.+.++||..++-- --=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 558999999999999999999999999997 566787888899999999999999865442 0124799997
Q ss_pred cC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 63 4431122223455555555555555554
No 41
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.39 E-value=0.018 Score=67.33 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++++.||++|+|+-++-+.|.-.+|. .|.+|=+|-..-+++|+.+.++||.-++-- --=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 477888898999999999999999855542 11248999986
Q ss_pred CCCeeecCCChhhHHHHHHHHHHHHHHH
Q 045037 139 VPNITFRSDNPPFKYHMKEFTKMIIDMM 166 (832)
Q Consensus 139 ~p~~~~R~~~p~y~~~~~~~~~~l~~~l 166 (832)
.-+- .++...+.-.+|.+.+++++
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 4332 23333344444444444444
No 42
>PLN02814 beta-glucosidase
Probab=95.38 E-value=0.016 Score=68.20 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|-+|-...+++|+.+.++||..++--= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6788888999999999999999998665431 13 37999986
Q ss_pred C
Q 045037 139 V 139 (832)
Q Consensus 139 ~ 139 (832)
.
T Consensus 149 ~ 149 (504)
T PLN02814 149 E 149 (504)
T ss_pred h
Confidence 3
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.29 E-value=0.02 Score=67.00 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..|+++++.||++|+|+-++-|-|.-.+|. +|.+|=+|-...+++|+.+.++||.-++--= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 559999999999999999999999999997 5667888888999999999999998665431 12 4799997
Q ss_pred cC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
.+ -+-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4431122223455555555555544443
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.19 E-value=0.033 Score=65.11 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++++.||++|+|+-++-+-|.-.+|. +|.+|=+|-...+++|+.+.++||..++--= -=.+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~--------H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH--------HFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc--------CCCCcHHHHH
Confidence 458999999999999999999999999996 5777778888999999999999999665531 1248999976
Q ss_pred CCCeeecCCChhhHHHHHHHHHHHHHHH
Q 045037 139 VPNITFRSDNPPFKYHMKEFTKMIIDMM 166 (832)
Q Consensus 139 ~p~~~~R~~~p~y~~~~~~~~~~l~~~l 166 (832)
.-+- .++...++-.+|.+.+++++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 5332 23333444444444444444
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.09 Score=56.89 Aligned_cols=112 Identities=29% Similarity=0.361 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHH---hcCCEEEEeccccccccccCCCCCcccc-
Q 045037 62 WWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIG---DLGMYATLRVGPFIEAEWNYGGFPFWLR- 137 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~---~~gL~Vilr~GPyicaEw~~GG~P~WL~- 137 (832)
=+|.|+-+|+.|+|-|+.=| ||.---..|.=-=.|+.|+.+.+++|+ ..||+|++-+= |. + .|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS----D-----fwaDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS----D-----FWADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch----h-----hccCh
Confidence 46899999999999999876 665544445544457789999997765 57999999862 10 1 1221
Q ss_pred ---cCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccc
Q 045037 138 ---EVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNT 190 (832)
Q Consensus 138 ---~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 190 (832)
++|....-.+-..-.+++-.|.+..+..+++ +|=-+=||||-||-.+
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~------eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK------EGILPDMVQVGNETNG 183 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH------cCCCccceEeccccCC
Confidence 0232222233345567778888888888874 4556789999999753
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.98 E-value=0.13 Score=49.98 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEEEcee----C-----CccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCc
Q 045037 64 DILKKAKAGGLNVIQTYVF----W-----NIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPF 134 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~ 134 (832)
+-++.+|++|.|+|.++.= | ..|.+.|+- ..+ -|..+++.|++.||.|+.|...- --|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~D---llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRD---LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcC---HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 3467889999999998542 2 245555554 222 67999999999999999998654 23333445799
Q ss_pred ccccCCCe-------------eecCCChhhHHHHHHHHHHHHHHH
Q 045037 135 WLREVPNI-------------TFRSDNPPFKYHMKEFTKMIIDMM 166 (832)
Q Consensus 135 WL~~~p~~-------------~~R~~~p~y~~~~~~~~~~l~~~l 166 (832)
|+..+++= ..-+-+..|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 99864431 112234568887776666666544
No 47
>PLN02849 beta-glucosidase
Probab=94.95 E-value=0.029 Score=66.12 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCC-CeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEK-GQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
..|+++++.||++|+|+-++-+-|.-.+|.. |.+|=+|-...+++|+.+.++||.-++--= =| -+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHH
Confidence 4589999999999999999999999999963 778888888999999999999998654421 12 47999976
Q ss_pred C-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 139 V-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 139 ~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
. -+-.=|..-..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421122223455555555554444443
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.91 E-value=0.099 Score=66.73 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=62.9
Q ss_pred ccEEEEEEeecCCCCCccccCCC-CceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEecc
Q 045037 475 TDYLWHTTSISLDGFHLPLREKV-LPVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTI 553 (832)
Q Consensus 475 ~GyllYrT~i~~~~~~~~~~~~~-~~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~ 553 (832)
.+-.|||++|.++... .+. +..|.+.++.-.+.|||||++||.-.+.. ..+.|++.-.|+.|.|+|.|.|-.-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999876431 122 56888999999999999999999765422 3455665545778889999988421
Q ss_pred Ccccccccccc----ccccee-EEEEc
Q 045037 554 GLPDSGVYLER----RYAGTR-TVAIQ 575 (832)
Q Consensus 554 GrvNyG~~l~~----~~KGI~-~V~l~ 575 (832)
.-|.++++ ...||. +|.|-
T Consensus 193 ---sdgs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 193 ---SDGSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred ---CCCCccccCCceeeccccceEEEE
Confidence 12222322 235888 88874
No 49
>PRK09936 hypothetical protein; Provisional
Probab=94.19 E-value=0.19 Score=54.65 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=47.7
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecc-hhHHHHHHHHHhcCCEEEEe
Q 045037 55 PRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGN-YNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 55 ~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~-~dl~~fl~~a~~~gL~Vilr 118 (832)
.+++++.|+.+++.+++.|++|+ .|-|.-. |.=||.+. -+|.+.++.|++.||.|+|.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tL--ivQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTL--VVQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEE--EEEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 36899999999999999999987 4556544 11188764 59999999999999999876
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.99 E-value=0.21 Score=55.38 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=72.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCC-------ccCCC-------CCe-eeeecchhHHHHHHHHHhcCCEEEEecccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWN-------IHEPE-------KGQ-FNFEGNYNLTKFIKMIGDLGMYATLRVGPF 122 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn-------~hEp~-------~G~-fdF~g~~dl~~fl~~a~~~gL~Vilr~GPy 122 (832)
.++.-++.|++++++|||+|=.-|-+. -.+|. +|. -.|+ -|+.+|+.|++.||.|+.+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 677889999999999999997655432 12221 121 1144 79999999999999999776 11
Q ss_pred cccccc----CCCCCcccc-cCCCeeecC----CChh----hHHHHHHHHHHHHHHHHhcccccccCCceEEeccc
Q 045037 123 IEAEWN----YGGFPFWLR-EVPNITFRS----DNPP----FKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVE 185 (832)
Q Consensus 123 icaEw~----~GG~P~WL~-~~p~~~~R~----~~p~----y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 185 (832)
-..-.. .-..|.|+. +.++..... .+-. -..+|+.|+..++..|.. .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 100001 112588876 356542332 1111 245777777777766653 22 47788887
No 51
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.73 E-value=0.16 Score=58.68 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCCCe--eeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQ--FNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
..++++++.||+||+|+.++-|.|.-.-|..+. .+=.|-...+++++.|.++|+.-++--- =| -+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hf---d~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HF---DLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCcHHHh
Confidence 458999999999999999999999999996654 7778888999999999999999665531 12 2699998
Q ss_pred cC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+. -+=.=|.. .++-.+|.+.+++++.
T Consensus 131 ~~ygGW~nR~~----i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWENRET----VDAFARYAATVFERFG 157 (460)
T ss_pred hccCCccCHHH----HHHHHHHHHHHHHHhc
Confidence 75 34322222 3333444445555544
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.76 E-value=1.9 Score=52.29 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=44.9
Q ss_pred EEeCCCCCh-hhHHH---HH-HHHHHcCCCEEEE-ceeCCccCCCCC---------eeeeecchhHHHHHHHHHhcCCEE
Q 045037 51 SIHYPRMPP-EMWWD---IL-KKAKAGGLNVIQT-YVFWNIHEPEKG---------QFNFEGNYNLTKFIKMIGDLGMYA 115 (832)
Q Consensus 51 ~~hy~r~~~-~~W~d---~l-~k~ka~G~N~V~~-yv~Wn~hEp~~G---------~fdF~g~~dl~~fl~~a~~~gL~V 115 (832)
|+|..-..+ ..++. +| .-+|++|+|+|+. +|+..-....=| .-.|.+..+|.+|++.|+++||.|
T Consensus 143 e~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~V 222 (613)
T TIGR01515 143 ELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGV 222 (613)
T ss_pred EEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEE
Confidence 566544322 22433 43 6679999999998 676432111001 113455679999999999999999
Q ss_pred EEec
Q 045037 116 TLRV 119 (832)
Q Consensus 116 ilr~ 119 (832)
||-.
T Consensus 223 ilD~ 226 (613)
T TIGR01515 223 ILDW 226 (613)
T ss_pred EEEe
Confidence 9875
No 53
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.42 E-value=3.5 Score=44.58 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-EeccccccccccCCCCCcccc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~ 137 (832)
..-|++.|+.++++|++.|++.+ +..| ..+...+++ ...+..+.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35599999999999999999953 2222 223444555 2478999999999999975 44431 11111
Q ss_pred cCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhcccc---ccHHHHHHHHHHHHhcC
Q 045037 138 EVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRE---LGTRYVHWAGTMAVRLN 214 (832)
Q Consensus 138 ~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 214 (832)
+-..|+.-+++..+.+++.++..+. + |.++|.+-- .++. ....... .-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~-~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLAG-YDVY-YEEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEecC-cccc-cCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223455566666677777776662 3 667765421 1110 0000000 12245566667777778
Q ss_pred Ccc
Q 045037 215 TGV 217 (832)
Q Consensus 215 ~~v 217 (832)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 764
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=90.23 E-value=0.69 Score=46.68 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccC-------CCCCee-----eeecchhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHE-------PEKGQF-----NFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~f-----dF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
+-+.+.|.-+|++|+|+|.+-=++...+ -.+..| .|....+|.++++.|+++||+||+-.=|-=++.
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3356667779999999998853332221 112222 355567999999999999999998875433333
No 55
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=89.63 E-value=6.7 Score=48.64 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEc-ee-------CCccCC---CCCeeeeecchhHHHHHHHHHhcCCEEEEecc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTY-VF-------WNIHEP---EKGQFNFEGNYNLTKFIKMIGDLGMYATLRVG 120 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~y-v~-------Wn~hEp---~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (832)
.+.|++.|..+|++|+|+|+.- |+ |.++-. .+ .-.|....+|.+|++.|+++||.|||-.=
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3558889999999999999973 32 443311 00 11355557999999999999999998753
No 56
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.01 E-value=4.8 Score=49.15 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHcCCCEEEE-cee-------CCccCC--CCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 66 LKKAKAGGLNVIQT-YVF-------WNIHEP--EKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 66 l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.-+|++|+|+|+. .|. |.+.-- ..=.-.|....+|.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999996 332 433110 0000123445799999999999999999874
No 57
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.86 E-value=6.3 Score=48.71 Aligned_cols=54 Identities=13% Similarity=0.253 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCcc-----CCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccc
Q 045037 65 ILKKAKAGGLNVIQT-YVF-------WNIH-----EPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
.|.-+|++|+|+|+. +|+ |.+- .|.+ .|....+|.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999997 453 4321 1211 3555679999999999999999987543
No 58
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=88.59 E-value=52 Score=37.84 Aligned_cols=249 Identities=13% Similarity=0.134 Sum_probs=125.2
Q ss_pred EeCCCCChhhHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCCeeeeecchh-HHHHHHHHHhcCCEEEEeccccc
Q 045037 52 IHYPRMPPEMWWDILKKAKAGGLNVIQTY-------VFWNIHEPEKGQFNFEGNYN-LTKFIKMIGDLGMYATLRVGPFI 123 (832)
Q Consensus 52 ~hy~r~~~~~W~d~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~fdF~g~~d-l~~fl~~a~~~gL~Vilr~GPyi 123 (832)
+.+.+..++.|- +.+|++|+.-|-.= -.|.-.-..-..-+-.-.+| |..|.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 455567777775 56788888865431 12554332211112111334 567889999999987663332
Q ss_pred cccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHH
Q 045037 124 EAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYV 203 (832)
Q Consensus 124 caEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 203 (832)
.+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.+.++ ||-|+|- +-..+.. ...--+
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 36753 5554321111234556788999988888888888632 3445551 2222110 111124
Q ss_pred HHHHHHHHhcCCcc-ceEEecccCCCCCcccccCCC--CCCCCCCCCCCCCCCc-eeeccccccccccCC-CCCCCCHHH
Q 045037 204 HWAGTMAVRLNTGV-PWVMCKQKDAPGPVINTCNGR--NCGDTFTGPNKPSKPV-LWTENWTARYRVFGD-PPSRRSAEN 278 (832)
Q Consensus 204 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~~~~t~ng~--~~~~~~~~~~~~~~P~-~~~E~~~Gwf~~WG~-~~~~~~~~~ 278 (832)
+.|.++++++..+. -.+.++...... .. .|. .+.+..........|- .++=.-.+|+=+-++ ....+++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~~~~---~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWGGTG---CK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEccccccC---CC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 55666666654432 112232211000 00 010 1111110000001111 001111244443333 234678999
Q ss_pred HHHHHHHHHHcCCeeeeeeEeecccCCCCCCCCCccccccCCCCCCccCCCCChhHHHHHHHHHHHHHhhhcc
Q 045037 279 LAFSVARFFSKNGTLANYYMYYGGTNYGRLGSSFVTTRYYDEAPIDEYGMLREPKWGHLRDLHSALRLCKKAL 351 (832)
Q Consensus 279 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~g~~~~~TSYDY~Apl~E~G~~~tpKy~~lr~l~~~~~~~~~~l 351 (832)
+...+....++|++++ + |. +-+.+|.+...--..|+++...++...+.+
T Consensus 289 li~~l~~~Vsk~GnlL---L-----NV----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 289 LIRDLVDIVSKGGNLL---L-----NV----------------GPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HHHHHhhhcCCCceEE---E-----cc----------------CCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 9988888888887742 1 11 234567776667788999999888654433
No 59
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.97 E-value=2.5 Score=48.71 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEce-------------eCCccCCCCCeeee-ecchhHHHHHHHHHhcCCEEEEeccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYV-------------FWNIHEPEKGQFNF-EGNYNLTKFIKMIGDLGMYATLRVGPFI 123 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~fdF-~g~~dl~~fl~~a~~~gL~Vilr~GPyi 123 (832)
.+..-.+.|.+++++|+|||-.=| +|..-- ||++-= .|..-|...|++|++.||.||-++=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 788889999999999999997433 244332 443321 2334688889999999999999998887
Q ss_pred cccccCCC---CCcccccC-CCee-ecCCC-------hhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccc
Q 045037 124 EAEWNYGG---FPFWLREV-PNIT-FRSDN-------PPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYN 189 (832)
Q Consensus 124 caEw~~GG---~P~WL~~~-p~~~-~R~~~-------p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 189 (832)
.|--..-. -|.|+... |+.. .|... .+..-.|+.|+..++..+.. .+ .|-++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~-~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR-NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh-CC------CCCceecceeec
Confidence 65422221 37777763 5533 33332 13456777887776665553 23 577889876655
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.70 E-value=5.5 Score=49.44 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHcCCCEEEE-cee-------CCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 67 KKAKAGGLNVIQT-YVF-------WNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 67 ~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.-+|++|+|+|.. +|+ |.+.-.- .=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 6669999999997 464 2221000 001124556799999999999999999874
No 61
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=86.52 E-value=1.1 Score=47.94 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=104.5
Q ss_pred EEEEEcCeeeeecccccc--CCCCCCceeeeccCccccc---CCceeEEEEEEcCCccccEEEEeeecc-ccccccc---
Q 045037 649 GMVWVNGKSIGRYWVSFL--SPTGKPSQSVYHIPRAFLK---PKDNLLAIFEEIGGNIDGVQIVTVNRN-TICSYIK--- 719 (832)
Q Consensus 649 G~vwVNG~nLGRYW~~~~--~~~gGPQqtlYhVP~~~Lk---~G~N~IvVfE~~g~~~~~i~l~~~~~~-~~c~~~~--- 719 (832)
-+|-|---|.||+-..+- .+..-+..+=| .|..+-+ +-. +.....|-....... |+|.+.+
T Consensus 54 dvIsv~sanYGR~~~~iC~pd~~~~~Si~C~-~p~s~~i~~~rCn---------nr~~C~vvv~s~~F~~DPCPgT~KYL 123 (265)
T KOG4729|consen 54 DVISVQSANYGRFSDKICDPDPGREESINCY-LPKSFSILSSRCN---------NRRQCTVVVDSDVFGDDPCPGTSKYL 123 (265)
T ss_pred CEEEEEecccCcccccccCCccccccchhcc-ChHHHHHHHHhcC---------CCceEEEEecCCccCCCCCCCchhhe
Confidence 355555567899875441 11133444556 6665443 111 222333444445555 9998876
Q ss_pred cCCCcccccccccccceeecccccCCceEEeCCCCCeEEEEeeeccCCCC---CccCC----cccCceeCCChhHHHHhH
Q 045037 720 ESDPTRVNNRKREDIVIQKVFDDARRSATLMCPDNRKILRVEFASYGNPF---GACGN----YILGNCSAPSSKRIIEQY 792 (832)
Q Consensus 720 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~YGr~~---~~C~~----~~~~~C~~~~s~~~v~~~ 792 (832)
|.+|-||..=..+.. .+..+.+...|++...+ .+..+.+++.. .+|.. ...-.|.....+..+...
T Consensus 124 ev~Y~Cvp~~~~~kt------~~~p~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (265)
T KOG4729|consen 124 EVQYGCVPYAFTEKT------FCTPSPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQ 196 (265)
T ss_pred EEEeccCccccccce------EecCCCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhc
Confidence 999988852222211 25667888888888655 68888888843 35542 223345555667888999
Q ss_pred cCCCCceeeeecCCCCCCCCCCC-CCCcceEEEEEEeec
Q 045037 793 CLGKNRCAIPFDQNIFDRERKLC-PNVPKNLAIQVQCGE 830 (832)
Q Consensus 793 C~Gk~~C~v~a~~~~Fg~~~DPC-~gt~KyL~v~y~C~~ 830 (832)
|.+++.|+...++.-|+ -+| ++-.+|+.|.+.|.+
T Consensus 197 ~~~~~~ct~~~~~~~~~---~~~~~~~~~~~~~n~e~~~ 232 (265)
T KOG4729|consen 197 CHAKEGCTLKSDGIKGH---CRHGHLHKVYVTVTEEIFS 232 (265)
T ss_pred ccccCCceeecCCcccc---ccccceeEEEEEecccccc
Confidence 99999999999999988 577 677889999988865
No 62
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=86.44 E-value=0.54 Score=54.10 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=105.5
Q ss_pred eEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCcc-CC---CCCeeee-ecchhHHHHHHHHHhc
Q 045037 37 SLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIH-EP---EKGQFNF-EGNYNLTKFIKMIGDL 111 (832)
Q Consensus 37 ~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~fdF-~g~~dl~~fl~~a~~~ 111 (832)
.|.++++++..++..-.+.++-.++-+++|+-|+.+|++++++. -+- |+ ++|.-+- ++..-++.|++.|..+
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48888888888877777777777778889999999999999987 344 55 3443222 2345789999999999
Q ss_pred CCEEEEeccccccccccCCCCC---cccc-cCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 045037 112 GMYATLRVGPFIEAEWNYGGFP---FWLR-EVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENE 187 (832)
Q Consensus 112 gL~Vilr~GPyicaEw~~GG~P---~WL~-~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 187 (832)
+|+|+++- |.+==.+||.= .|-- +.|+-.+ -||.++..-++|.+.+++-++ ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998874 33322355542 2331 1233111 255566666777777766444 4567899999999
Q ss_pred cccchhccccccHHHHHHHHHHHH
Q 045037 188 YNTIQLAFRELGTRYVHWAGTMAV 211 (832)
Q Consensus 188 yg~~~~~~~~~~~~y~~~l~~~~~ 211 (832)
.... -...+..+++|+++|+-
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 2211 12356789999999963
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.35 E-value=10 Score=49.38 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEE-cee-------CCccC--CCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 65 ILKKAKAGGLNVIQT-YVF-------WNIHE--PEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~-------Wn~hE--p~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.|.-+|++|+|+|+. +|+ |.+.- ...=.-.|.+..||.+|++.|+++||.|||--
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 367899999999997 453 43210 00001134556799999999999999999874
No 64
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.20 E-value=6.7 Score=42.22 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-EeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~ 138 (832)
-.|++.++.++++|+..|++.+. ..|+. ....+|+ ..++..+.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~~-~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDER-LARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Ccccc-cccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 35999999999999999999642 22220 1122333 2378999999999999865 3322 11000
Q ss_pred CCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccch--hccccccHHHHHHHHHHHHhcCCc
Q 045037 139 VPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQ--LAFRELGTRYVHWAGTMAVRLNTG 216 (832)
Q Consensus 139 ~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 216 (832)
.+.+.|+.-++...+.++++++..+. + |.++|.+.--..+.... ... ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 12344565566666667776666552 3 55666542100000000 000 12235677788888888876
Q ss_pred c
Q 045037 217 V 217 (832)
Q Consensus 217 v 217 (832)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 65
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.51 E-value=1.2 Score=52.30 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=45.9
Q ss_pred EeCCCCC----hhhHH---HHHHHHHHcCCCEEEE-ceeCCc-----cCCCCCe-e-------------eeecchhHHHH
Q 045037 52 IHYPRMP----PEMWW---DILKKAKAGGLNVIQT-YVFWNI-----HEPEKGQ-F-------------NFEGNYNLTKF 104 (832)
Q Consensus 52 ~hy~r~~----~~~W~---d~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~G~-f-------------dF~g~~dl~~f 104 (832)
+|.|.|+ .+.|+ +.|.-+|++|+++|-+ +++-+. |--.+-. | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555553 35676 4566779999999987 455332 2221111 2 23345799999
Q ss_pred HHHHHhcCCEEEEec
Q 045037 105 IKMIGDLGMYATLRV 119 (832)
Q Consensus 105 l~~a~~~gL~Vilr~ 119 (832)
++.|++.||+|||-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999875
No 66
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.36 E-value=3.4 Score=48.72 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=44.0
Q ss_pred EEEEeCCCCChhhHHHHHHHHH-HcCCCEEEEc-ee---CCcc-C-CCCC--eeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 49 SGSIHYPRMPPEMWWDILKKAK-AGGLNVIQTY-VF---WNIH-E-PEKG--QFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 49 sG~~hy~r~~~~~W~d~l~k~k-a~G~N~V~~y-v~---Wn~h-E-p~~G--~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
-|+-|....-++.|+..|+.++ +.||.-|++- +| .... | ..+| .|||+ .||.++|...++||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 4555665667888999999997 7799999863 22 1111 1 1223 39999 99999999999999977665
Q ss_pred c
Q 045037 120 G 120 (832)
Q Consensus 120 G 120 (832)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 4
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.59 E-value=3.8 Score=41.36 Aligned_cols=124 Identities=17% Similarity=0.115 Sum_probs=73.2
Q ss_pred HHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeec
Q 045037 66 LKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFR 145 (832)
Q Consensus 66 l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 145 (832)
|+.++++|+..|+....+....... ...++.+.++++++||.+..--.+. .... +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~------~~~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT------NFWS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE------SSSC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc------cccc-------cccccc
Confidence 6789999999999976533222221 3479999999999999966322111 1000 111133
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccc--cccccch--hccccccHHHHHHHHHHHHhcCCcc
Q 045037 146 SDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVE--NEYNTIQ--LAFRELGTRYVHWAGTMAVRLNTGV 217 (832)
Q Consensus 146 ~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 217 (832)
+..+. ++...+.+.+.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 77777788888887763 3 6677777643 2221110 011 133456777777787888764
No 68
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=81.90 E-value=17 Score=41.02 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=87.7
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHH---hcCCEEEEeccccccccccCCCCC
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIG---DLGMYATLRVGPFIEAEWNYGGFP 133 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~---~~gL~Vilr~GPyicaEw~~GG~P 133 (832)
-.|+..+.-++.+|+.|++.--.|-.| |.|.+-|++-++..- +.+|...|+ |.+--|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 378889999999999999999998866 566777877776553 345555555 2222221 1
Q ss_pred cccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHHHHHHHHHHhc
Q 045037 134 FWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRL 213 (832)
Q Consensus 134 ~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 213 (832)
.|-....++.+-...+. .+..++.++.|++.+++..+.--+|-||+++=--.+. .+-+++++.+++.++++
T Consensus 117 ~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~~ 187 (345)
T PF14307_consen 117 RWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKEA 187 (345)
T ss_pred ccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHHc
Confidence 23222233322111110 1234567778888888654444588899988322111 25578999999999999
Q ss_pred CCccceEEe
Q 045037 214 NTGVPWVMC 222 (832)
Q Consensus 214 g~~vp~~~~ 222 (832)
|+..+.+..
T Consensus 188 G~~giyii~ 196 (345)
T PF14307_consen 188 GLPGIYIIA 196 (345)
T ss_pred CCCceEEEE
Confidence 998665543
No 69
>PRK01060 endonuclease IV; Provisional
Probab=80.99 E-value=20 Score=38.66 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEE--EEeccccccccccCCCCCcccccC
Q 045037 62 WWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA--TLRVGPFIEAEWNYGGFPFWLREV 139 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~ 139 (832)
+++-+++++++|++.|+..+.- -+.-..+.++-+ ++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~~---~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEEL---NIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCHH---HHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 8899999999999999996531 122122222222 6888999999999973 11123331
Q ss_pred CCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 045037 140 PNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQ 183 (832)
Q Consensus 140 p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 183 (832)
+.+-+.|+..+++..+.+++.++.-+ .+ |-++|-+.
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345577788877777777777655 23 55565554
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=80.89 E-value=6.6 Score=43.33 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=52.8
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecc--hhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
...+..++.++++|+.||.+=.+.+-..++... -+.|.|+-. -|..++++.+++.|++|++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 367778999999999997776555554444332 145666533 2899999999999999999999998754
No 71
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=80.51 E-value=6.6 Score=43.83 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEc-------eeCCccCCCCCeeeee-c-chhHHHHHHHHHhcCCEEEEecccccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTY-------VFWNIHEPEKGQFNFE-G-NYNLTKFIKMIGDLGMYATLRVGPFIEAEWN 128 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~fdF~-g-~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~ 128 (832)
.++.-+..|+.+|+.|+|+|-+= |.+..-.|..-+..-. . ..|+.++++.++++||++|.|.=-+---...
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 45677889999999999999753 3454444433222211 1 2699999999999999999997322110000
Q ss_pred CCCCCcccccC-CCeeecCCC-----hhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccc------------cccc
Q 045037 129 YGGFPFWLREV-PNITFRSDN-----PPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVEN------------EYNT 190 (832)
Q Consensus 129 ~GG~P~WL~~~-p~~~~R~~~-----p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN------------Eyg~ 190 (832)
.--|.|-.+. .+-..|... .+|.+.|.+|.-.|++.++... +=-+|+++ .|+.
T Consensus 91 -~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G--------FdEIqfDYIRFP~~~~~~~l~y~~ 161 (316)
T PF13200_consen 91 -EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG--------FDEIQFDYIRFPDEGRLSGLDYSE 161 (316)
T ss_pred -hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC--------CCEEEeeeeecCCCCcccccccCC
Confidence 0145555431 221123221 2488999999999999988532 23345543 1211
Q ss_pred chhccc----cccHHHHHHHHHHHHhcCCcc
Q 045037 191 IQLAFR----ELGTRYVHWAGTMAVRLNTGV 217 (832)
Q Consensus 191 ~~~~~~----~~~~~y~~~l~~~~~~~g~~v 217 (832)
. ... ..=.+|++..++.++..|+.|
T Consensus 162 ~--~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 162 N--DTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred C--CCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 0 000 122468888888887776543
No 72
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.32 E-value=1.6 Score=46.72 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCC--eeee-------ecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQTYVFWNIHEPEKG--QFNF-------EGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~fdF-------~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.|.-+|++|+|+|.+-=++...+.--| .-|| ....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45688899999999998533332211111 2222 345699999999999999999875
No 73
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=79.78 E-value=3.7 Score=46.60 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=47.3
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccc
Q 045037 48 FSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFI 123 (832)
Q Consensus 48 ~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyi 123 (832)
+|=++++...+.+..+..|++|+++|+..|= =++|.|++..=+.- ..+..+++.|+++||.|++-..|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iF----TSL~ipe~~~~~~~--~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIF----TSLHIPEDDPEDYL--ERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEE----EEE---------HH--HHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEE----CCCCcCCCCHHHHH--HHHHHHHHHHHHCCCEEEEECCHHH
Confidence 5667888888899999999999999997664 46789885432222 3789999999999999999987744
No 74
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=79.43 E-value=26 Score=37.84 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhc-CCEEEEeccccccccccCCCCCccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDL-GMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
.-|++.|+.+|++|++.|++-+........+ .....+++.+.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6699999999999999999976532111111 11345899999999999 6665543 2321 0
Q ss_pred CCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccc
Q 045037 139 VPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVEN 186 (832)
Q Consensus 139 ~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 186 (832)
.+...++.-++.....+++.++..+. + |-+.|.+..-+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~~--l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCEE--L----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCCC
Confidence 12233444455555555666665542 3 55666665543
No 75
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=79.04 E-value=25 Score=40.35 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=53.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEc----eeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE-eccccccccccCCCC
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTY----VFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL-RVGPFIEAEWNYGGF 132 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil-r~GPyicaEw~~GG~ 132 (832)
++....+++++++++|+..|+.. ++|..-+.+. ..++.++-++++++||.|.. -++-+..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 33456799999999999999864 1221111100 23578999999999999763 3321111
Q ss_pred CcccccCCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 133 PFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 133 P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
|.|.. + .+-+.|+..+++.-+++++.++.-+
T Consensus 95 ~~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21211 1 2345577777665555566655544
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.89 E-value=3.2 Score=49.65 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-cee-------CCcc-----CCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 64 DILKKAKAGGLNVIQT-YVF-------WNIH-----EPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
++|.-+|++|+|+|.. +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688889999999997 453 4322 1211 34556799999999999999999874
No 77
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=78.85 E-value=37 Score=36.39 Aligned_cols=129 Identities=11% Similarity=0.116 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE-eccccccccccCCCCCcccccC
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL-RVGPFIEAEWNYGGFPFWLREV 139 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil-r~GPyicaEw~~GG~P~WL~~~ 139 (832)
.|++.|+.++++|++.|++..-.. |+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~-- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM-- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc--
Confidence 499999999999999999842110 11011 222 24788999999999999753 321 123443322
Q ss_pred CCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc-cc-cchhccccccHHHHHHHHHHHHhcCCcc
Q 045037 140 PNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENE-YN-TIQLAFRELGTRYVHWAGTMAVRLNTGV 217 (832)
Q Consensus 140 p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (832)
..++.-+++..+.+++.++.-+. + |.+.|.+-.-.. +. .....+. .-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~~--l----Ga~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAKE--M----NAGYTLISAAHAGYLTPPNVIWG-RLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEcCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEE
Confidence 12344455555555555555442 2 555554422111 00 0000011 22346777788888888754
No 78
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.60 E-value=17 Score=39.15 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-EeccccccccccCCCCCcccccC
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEAEWNYGGFPFWLREV 139 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~~ 139 (832)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999642 1111 01122333 2368899999999999875 333211 0011
Q ss_pred CCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccc---cccHHHHHHHHHHHHhcCCc
Q 045037 140 PNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFR---ELGTRYVHWAGTMAVRLNTG 216 (832)
Q Consensus 140 p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~ 216 (832)
+-+.++.-++.....+++.++..+. + |.++|-+.-- +.+ ...... ..-.+.++.|.+.+++.|+.
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~~~-~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLAGY-DVY-YEQANNETRRRFIDGLKESVELASRASVT 153 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEECCc-ccc-ccccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 1133555566666677777776662 3 6677755210 000 000000 01134667777778888876
Q ss_pred c
Q 045037 217 V 217 (832)
Q Consensus 217 v 217 (832)
+
T Consensus 154 i 154 (283)
T PRK13209 154 L 154 (283)
T ss_pred E
Confidence 4
No 79
>PRK12313 glycogen branching enzyme; Provisional
Probab=77.90 E-value=3.7 Score=50.04 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEE-cee-------CCccCC--CCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 66 LKKAKAGGLNVIQT-YVF-------WNIHEP--EKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 66 l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
|.-+|++|+|+|.. +|+ |.+.-. ..=.-.|.+..+|.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 553 321100 0001135566799999999999999999874
No 80
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.42 E-value=7.8 Score=50.69 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=69.6
Q ss_pred CeEEECCEEeEEEEE---EEeCCCC--ChhhHHHHHHHHHHcCCCEEEE-cee-CCcc-CC--CCCeee----e----ec
Q 045037 36 RSLIINGKRELFFSG---SIHYPRM--PPEMWWDILKKAKAGGLNVIQT-YVF-WNIH-EP--EKGQFN----F----EG 97 (832)
Q Consensus 36 ~~~~~dG~p~~~~sG---~~hy~r~--~~~~W~d~l~k~ka~G~N~V~~-yv~-Wn~h-Ep--~~G~fd----F----~g 97 (832)
-.+.|+|+.++.+.+ +-..+++ +=+.|+++|+.+|++|.|+|-. +++ =.-. .| ..+.+. | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 346666644444433 3345664 5577999999999999999975 444 1100 00 111111 3 25
Q ss_pred chhHHHHHHHHHhc-CCEEEEeccccccccccCCCC-CcccccCCCeeecCCChhhHHHH
Q 045037 98 NYNLTKFIKMIGDL-GMYATLRVGPFIEAEWNYGGF-PFWLREVPNITFRSDNPPFKYHM 155 (832)
Q Consensus 98 ~~dl~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~R~~~p~y~~~~ 155 (832)
..|+.++++.|++. ||++|+-. =|+--+. =.||..+|+.-.-..+.+|++++
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 67899999999986 99999874 1222222 34888788754444455555444
No 81
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=76.46 E-value=31 Score=40.98 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCeEEECCEEeEEEEEEEeCC-----CCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHH
Q 045037 35 GRSLIINGKRELFFSGSIHYP-----RMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIG 109 (832)
Q Consensus 35 ~~~~~~dG~p~~~~sG~~hy~-----r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~ 109 (832)
+..|.|+|.|.++-++.--+. |..-+.-+-.|+-++++|+|++++.= -|.| .=+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVWG--------GGvY------Esd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVWG--------GGVY------ESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEec--------Cccc------cchhHHHHhh
Confidence 457899999999988875432 22334455578999999999999742 1222 3578999999
Q ss_pred hcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc--
Q 045037 110 DLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENE-- 187 (832)
Q Consensus 110 ~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-- 187 (832)
+.||.|---. =+.||- =..|..|+.-|+.=++.=+.+|+. ...||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~-------HpSviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSH-------HPSVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhcc-------CCeEEEEeCCCccH
Confidence 9999765221 123332 234667888887766666666664 456777765555
Q ss_pred -------cccchhccccccHHHH----HHHHHHHHhcCCccceEEecc
Q 045037 188 -------YNTIQLAFRELGTRYV----HWAGTMAVRLNTGVPWVMCKQ 224 (832)
Q Consensus 188 -------yg~~~~~~~~~~~~y~----~~l~~~~~~~g~~vp~~~~~~ 224 (832)
||.....-...-++|. +-++++.....-..|++++-.
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 2221000001123333 334555554455678887653
No 82
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.57 E-value=39 Score=35.85 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil 117 (832)
-+++.+++++++|++.|+...++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999985322 12688899999999999763
No 83
>PLN02960 alpha-amylase
Probab=74.17 E-value=5.9 Score=49.59 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEE-cee-------CCccCCC--CCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQT-YVF-------WNIHEPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
++.|.-+|++|+|+|+. .|+ |.+.-.- .=.-.|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999997 454 4432100 001124455799999999999999999875
No 84
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=73.73 E-value=5.3 Score=48.49 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEE-cee---------------CCccC-----CCCCeee----ee--cchhHHHHHHHHHhcCCEEE
Q 045037 64 DILKKAKAGGLNVIQT-YVF---------------WNIHE-----PEKGQFN----FE--GNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~fd----F~--g~~dl~~fl~~a~~~gL~Vi 116 (832)
+.|.-+|++|+|+|+. +|+ |.+.- |. +.|- |- ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999997 453 33321 11 0110 11 02689999999999999999
Q ss_pred Eec
Q 045037 117 LRV 119 (832)
Q Consensus 117 lr~ 119 (832)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 875
No 85
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=72.41 E-value=63 Score=39.03 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEc-eeCCccCCCCCee---e-----eecc----hhHHHHHHHHHhcCCEEEEeccccccc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTY-VFWNIHEPEKGQF---N-----FEGN----YNLTKFIKMIGDLGMYATLRVGPFIEA 125 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~f---d-----F~g~----~dl~~fl~~a~~~gL~Vilr~GPyica 125 (832)
++.=++.|..|+...||.|+.| ..|.+|.|-++.= + +.++ .-+...|+.|++.|+.++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4567889999999999999999 8899999987543 2 2222 367899999999999988543333222
Q ss_pred cc--cCCCCCccccc
Q 045037 126 EW--NYGGFPFWLRE 138 (832)
Q Consensus 126 Ew--~~GG~P~WL~~ 138 (832)
+. ..|-.|.|-+-
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 22 35667889864
No 86
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=72.37 E-value=6.1 Score=47.85 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-cee-------CCccCCCCCeee------eecchhHHHHHHHHHhcCCEEEEe
Q 045037 59 PEMWWDILKKAKAGGLNVIQT-YVF-------WNIHEPEKGQFN------FEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~fd------F~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
.+.=.+.|.-+|+||+++|+. .|. |.+- |+.- |..-.||.+|||.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344466888999999999997 342 5532 2222 334469999999999999999986
No 87
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=72.37 E-value=4.9 Score=40.67 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=32.2
Q ss_pred EEEeCCCceEEEEEcCeeeeeccccccCCCCCCceeeeccC---cccccCCceeEEEEEE
Q 045037 640 AIEVATMSKGMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIP---RAFLKPKDNLLAIFEE 696 (832)
Q Consensus 640 ~Ld~~g~gKG~vwVNG~nLGRYW~~~~~~~gGPQqtlYhVP---~~~Lk~G~N~IvVfE~ 696 (832)
.|..++.|+=.+||||+.+|+-- ...++-....++|+.- .++|++|+|.|.|.=.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~--l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg 64 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP--LAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLG 64 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE----------BTTEEEEEEEE-TTT--TTEEEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCc--cccccccCCCceEEEEEeChHHhCCCCCEEEEEEe
Confidence 46677777888999999999732 1000001123333243 7799999999988643
No 88
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=72.35 E-value=10 Score=32.35 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCcceEEEEEECCEEEEEEeccCCC--ceeEEeecc
Q 045037 504 ASLGHMMHGFVNGHYIGSGHGTNKE--NSFVFQKPI 537 (832)
Q Consensus 504 ~~~~D~a~VfVng~~vG~~~~~~~~--~~~~~~~~~ 537 (832)
....|.|.||++++++|++++...+ .++.|++.+
T Consensus 24 pk~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 24 PKKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 4568999999999999999986544 345555433
No 89
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=71.78 E-value=32 Score=38.68 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=58.1
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecch--hH--HHHHHHHHhcCCEEEEecccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNY--NL--TKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~--dl--~~fl~~a~~~gL~Vilr~GPyic 124 (832)
+|..|+ ..+.-++.++++++.||.+=.+.+-+.+++. .+.|+|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 555664 5677899999999999988777665555443 4677776543 77 99999999999999999999998
Q ss_pred cc
Q 045037 125 AE 126 (832)
Q Consensus 125 aE 126 (832)
.+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 64
No 90
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.47 E-value=16 Score=30.60 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil 117 (832)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4567788999999999999999832 333 58877765 4778999999999988764
No 91
>PRK09989 hypothetical protein; Provisional
Probab=70.12 E-value=51 Score=35.15 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil 117 (832)
-.+++|++++++|++.|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999854332 2467888889999999774
No 92
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.94 E-value=6.4 Score=47.16 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCCEEEE-ceeCCccCCCCCeee----------eecchhHHHHHHHHHhcCCEEEEec
Q 045037 61 MWWDILKKAKAGGLNVIQT-YVFWNIHEPEKGQFN----------FEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~fd----------F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
-+.+.|.-+|++|+|+|-+ .++-+-.. ..-|+ |....+|.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4677889999999999987 35432110 01122 4455799999999999999999875
No 93
>PRK09505 malS alpha-amylase; Reviewed
Probab=69.47 E-value=8.2 Score=47.52 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCC----CC------------------eeeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 62 WWDILKKAKAGGLNVIQT-YVFWNIHEPE----KG------------------QFNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G------------------~fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....+|.++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567788899999999986 4554433211 11 112445579999999999999999988
Q ss_pred c
Q 045037 119 V 119 (832)
Q Consensus 119 ~ 119 (832)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 94
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=69.40 E-value=20 Score=41.15 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
...+.|+++++.+|++||+....=+- ....+.- .-|...++.|++.|.++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37899999999999999999887663 1222222 378899999999999999997
No 95
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=68.75 E-value=21 Score=36.11 Aligned_cols=57 Identities=25% Similarity=0.255 Sum_probs=31.6
Q ss_pred CceEEeCCcceEEEEEECCEEEEEEec----cCCCc---eeEEeeccccCCCccEEEEEEeccCc
Q 045037 498 LPVLRIASLGHMMHGFVNGHYIGSGHG----TNKEN---SFVFQKPIILKPGINHISLLGVTIGL 555 (832)
Q Consensus 498 ~~~L~v~~~~D~a~VfVng~~vG~~~~----~~~~~---~~~~~~~~~l~~g~~~L~ILvEn~Gr 555 (832)
...|.|... .+-.+||||+.||...- +.-.+ -.+++..--|+.|.|+|.|++-+...
T Consensus 5 ~A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 5 SARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp --EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 355666543 36789999999997541 11011 12345444578899999999976443
No 96
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=68.62 E-value=21 Score=40.82 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=69.9
Q ss_pred HHcCCCEEEEcee---------------CCcc---CCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCC
Q 045037 70 KAGGLNVIQTYVF---------------WNIH---EPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGG 131 (832)
Q Consensus 70 ka~G~N~V~~yv~---------------Wn~h---Ep~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG 131 (832)
|-+|||.++.-|= |--. .+..|.|||+.+..=..||+.|++.|+..++-+. =-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cC
Confidence 4577777776542 2222 2567999998776677799999999999887752 23
Q ss_pred CCcccccCCCe----eecCC-ChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccch-------hccc-cc
Q 045037 132 FPFWLREVPNI----TFRSD-NPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQ-------LAFR-EL 198 (832)
Q Consensus 132 ~P~WL~~~p~~----~~R~~-~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~ 198 (832)
.|.|+.+.-.. ...++ -+...++-..|+..++++++.+ |=+|--+=-=||....- +.+. +.
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 78888763211 00111 2345566667777777777532 32444444448865220 1111 23
Q ss_pred cHHHHHHHHHHHHhcCCccceEEec
Q 045037 199 GTRYVHWAGTMAVRLNTGVPWVMCK 223 (832)
Q Consensus 199 ~~~y~~~l~~~~~~~g~~vp~~~~~ 223 (832)
..+.++.|...+++.|+..-+..|+
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecc
Confidence 4678899999999999987665554
No 97
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=68.37 E-value=36 Score=37.64 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=53.6
Q ss_pred CCCCChhhHHHHHHHHHHcCCC--EEEEceeCCccCCCCCeeeeecc--hhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 54 YPRMPPEMWWDILKKAKAGGLN--VIQTYVFWNIHEPEKGQFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 54 y~r~~~~~W~d~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
+.....+.-++.++++++.|+. +|-+=..| ...-|.|.|.-. -|..++++..++.|+++++..=|+|+.+
T Consensus 24 ~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 24 KADINQETVLNYAQEIIDNGFPNGQIEIDDNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred ccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 3456888899999999999975 44443345 234576766532 3899999999999999999999999864
No 98
>PRK10785 maltodextrin glucosidase; Provisional
Probab=67.98 E-value=9.6 Score=46.25 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEE-ceeCC--ccCCCCCee-----eeecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQT-YVFWN--IHEPEKGQF-----NFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~f-----dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.|.-+|++|+|+|-. +||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788889999999997 56622 121111111 24456799999999999999999864
No 99
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.90 E-value=78 Score=33.75 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=38.0
Q ss_pred EeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE
Q 045037 52 IHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 52 ~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil 117 (832)
+.|-+.+ ++++|++++++|++.|++.. |. ..+++.+.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4454454 78899999999999999832 11 13799999999999999854
No 100
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=67.78 E-value=10 Score=45.46 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHcCCCEEEE-ceeCCccCCC-CCee---e-------eecchhHHHHHHHHHhcCCEEEEec
Q 045037 60 EMWWDILKKAKAGGLNVIQT-YVFWNIHEPE-KGQF---N-------FEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~f---d-------F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.-+.+.|.-+|++|+|+|-. +|+=+ +. ..-| | |.+..++.++++.|+++||+|||-.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34677899999999999987 34410 11 1111 2 4455799999999999999999864
No 101
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=66.37 E-value=42 Score=38.72 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=67.4
Q ss_pred EeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCC----Ceeeeecc---hhHHHHHHHHHhcCCEEEEecccccc
Q 045037 52 IHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEK----GQFNFEGN---YNLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 52 ~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~fdF~g~---~dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
-+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+--+-. .-|..+.+.+++.||+.=|+..|-++
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 457788999999999999999998766655586542222 33322211 24999999999999999999888654
Q ss_pred cccc--CCCCCcccccCCCee---------ecCCChhhHHHHHHHHHHH
Q 045037 125 AEWN--YGGFPFWLREVPNIT---------FRSDNPPFKYHMKEFTKMI 162 (832)
Q Consensus 125 aEw~--~GG~P~WL~~~p~~~---------~R~~~p~y~~~~~~~~~~l 162 (832)
++=. +-..|.|+...++-. |-..+|..++++...+.++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 3211 224799998755421 2233555555554444443
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=65.54 E-value=21 Score=38.56 Aligned_cols=65 Identities=14% Similarity=0.270 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCee--eeecc--hhHHHHHHHHHhcCCEEEEeccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQF--NFEGN--YNLTKFIKMIGDLGMYATLRVGPFI 123 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~f--dF~g~--~dl~~fl~~a~~~gL~Vilr~GPyi 123 (832)
..+..++.++.+++.||-.=.+.+-+.+.+. .+.| +|+.. -|...+++.+++.|++|+|..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6777899999999999997777766665554 3666 54422 3899999999999999999998887
No 103
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.15 E-value=30 Score=37.72 Aligned_cols=81 Identities=17% Similarity=0.354 Sum_probs=62.0
Q ss_pred eeEEEeCCeEEECCEEeEEEEE--EEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeee--cchhHHHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSG--SIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE--GNYNLTKF 104 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG--~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~--g~~dl~~f 104 (832)
..|.+. .+.+.+.+++++.| ++| .++.-.+.-+++|++|+..++.|.+= |+---+.|. |...+..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHH
Confidence 345553 36777779999988 344 57788889999999999999999865 333334666 56789999
Q ss_pred HHHHHhcCCEEEEec
Q 045037 105 IKMIGDLGMYATLRV 119 (832)
Q Consensus 105 l~~a~~~gL~Vilr~ 119 (832)
-+.|++.||.++--|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999988776
No 104
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.33 E-value=1.9 Score=51.63 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=64.2
Q ss_pred ccccccccccCCCcccccccccccceeecccccCCceEEeCCCCCeEEEEeeeccCCCCCccCCcccCceeCCChhHHHH
Q 045037 711 RNTICSYIKESDPTRVNNRKREDIVIQKVFDDARRSATLMCPDNRKILRVEFASYGNPFGACGNYILGNCSAPSSKRIIE 790 (832)
Q Consensus 711 ~~~~c~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~v~ 790 (832)
.+..|.+..++|+.+. |. +-=.|.++.++..|.+|.||..+++|+.+...+|.++.+...+.
T Consensus 310 ~dgl~~~pk~ghlk~~-------ht-----------s~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~ 371 (649)
T KOG0496|consen 310 LDGLLRQPKYGHLKPL-------HT-----------SYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFN 371 (649)
T ss_pred cchhhcCCCccccccc-------hh-----------hhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccC
Confidence 3367777777786331 11 12256778888889999999999999999999999999999999
Q ss_pred hHcCCCCceeeeecCCCCC
Q 045037 791 QYCLGKNRCAIPFDQNIFD 809 (832)
Q Consensus 791 ~~C~Gk~~C~v~a~~~~Fg 809 (832)
+.|..+..|++..-.+.++
T Consensus 372 ~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 372 KPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred CCccccCceeEEechhhcc
Confidence 9999999999988655443
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=64.21 E-value=13 Score=44.67 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCEEEE-ceeCCccCCCC-Cee----------eeecchhHHHHHHHHHhcCCEEEEec
Q 045037 62 WWDILKKAKAGGLNVIQT-YVFWNIHEPEK-GQF----------NFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~-yv~Wn~hEp~~-G~f----------dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.++|.-+|++|+++|-+ +++-. |.. .-| .|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 567889999999999987 45422 211 112 24455799999999999999999865
No 106
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=64.15 E-value=14 Score=41.14 Aligned_cols=72 Identities=11% Similarity=0.240 Sum_probs=54.0
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCC--eeeeecch--hHHHHHHHHHhcCCEEEEecccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKG--QFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
+|..|+ ..+.-++.++++++.||-+=.+.+-|.+... .+ .|+|+-.+ |..++|+.+++.|++|++..=|+|+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 13 FWQSKERYKTQEELLDVAKEYRKRGIPLDVIVQDWFYWPK-QGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHhCCCccEEEEechhhcC-CCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 344453 5666789999999999887666665654442 34 77776543 8999999999999999998767663
No 107
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=63.22 E-value=17 Score=41.23 Aligned_cols=86 Identities=10% Similarity=0.147 Sum_probs=46.4
Q ss_pred CCCCCceeeccccccccccCCCCCCCCHHHHHHHHHHHHHcCCeeeeeeEeecccCCCCCCCCCccccccCCCCCCccC-
Q 045037 249 KPSKPVLWTENWTARYRVFGDPPSRRSAENLAFSVARFFSKNGTLANYYMYYGGTNYGRLGSSFVTTRYYDEAPIDEYG- 327 (832)
Q Consensus 249 ~~~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~g~~~~~TSYDY~Apl~E~G- 327 (832)
..++|.+++|..+| -..|+.......+..+....-..++.|+..+.|+-+ ..-.+|.-. | ..+.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~-------~-~~g~~~~dg~ 355 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQ-------F-HGGLVDHDGR 355 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTT-------T-S--SB-TTS-
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchh-------h-hcccCCccCC
Confidence 47899999999998 556765555555566665666778899998877766 222333220 0 135677788
Q ss_pred CCCChhHHHHHHHHHHHH
Q 045037 328 MLREPKWGHLRDLHSALR 345 (832)
Q Consensus 328 ~~~tpKy~~lr~l~~~~~ 345 (832)
. .+++|.+++++...|+
T Consensus 356 ~-~~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 356 E-PTRRYREVAQLGRELK 372 (374)
T ss_dssp --B-HHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHh
Confidence 5 5899999999998775
No 108
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=62.32 E-value=12 Score=40.23 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEecc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVG 120 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (832)
+...++-|+.+|++||++|++- .|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 6678899999999999999874 3666655 23788999999999999998887
No 109
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.35 E-value=19 Score=40.15 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=50.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC-----CCCeeeeecch--hHHHHHHHHHhcCCEEEEecccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-----EKGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
..+..++.++++++.||-+=.+.+-+.++.. .-|.|+|+-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5677899999999999987666665444432 23567765432 8999999999999999999877764
No 110
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=60.96 E-value=35 Score=37.46 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=70.3
Q ss_pred EEEEEEEeCCCCChh-hHH---HHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccc
Q 045037 46 LFFSGSIHYPRMPPE-MWW---DILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 46 ~~~sG~~hy~r~~~~-~W~---d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
+-+++..||+.-|.. ..+ ++|++--++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888774332 122 3444444699999988763 5666 8899999999997664344443
Q ss_pred ccc---------ccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 122 FIE---------AEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 122 yic---------aEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
..+ +||..--+|.|+.+.=. ....+++..++.--++...+++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 57877778999986200 01233345566677777778777764
No 111
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.64 E-value=1.2e+02 Score=32.55 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEcee
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVF 82 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~ 82 (832)
-.|+++|..+|++||+.|++-|-
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEecc
Confidence 45999999999999999999873
No 112
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=60.17 E-value=17 Score=39.94 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEcee---CCccCCCCC--------eeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVF---WNIHEPEKG--------QFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~---Wn~hEp~~G--------~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+..-.++++.+|..|+|++-+=+= =++.=|... +=.|- |+..||+.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 5666788999999999999865432 111111111 11244 99999999999999999996
No 113
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=58.82 E-value=19 Score=40.37 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=55.8
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecch--hHHHHHHHHHhcCCEEEEecccccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
+|..|. ..+.-++.++++++.||.+=.+.+-+.+. ...+.|+|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455553 56667889999999999877776654332 345677776433 899999999999999999998988753
No 114
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.62 E-value=14 Score=48.63 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEE-ceeCCccCCC---CC--e---ee----------ee--cchhHHHHHHHHHhcCCEEEEec
Q 045037 64 DILKKAKAGGLNVIQT-YVFWNIHEPE---KG--Q---FN----------FE--GNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G--~---fd----------F~--g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.|.-+|++|+|+|+. +|+=...|.. .| . || |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3566899999999997 5653222221 11 0 21 23 56799999999999999999874
No 115
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=57.54 E-value=4.6 Score=42.83 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 63 WDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.|||.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4568889999999999999997776655445555 8999999999999999999
No 116
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.48 E-value=73 Score=34.06 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCCEEEEceeCCccCCCCCe-eeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCC
Q 045037 62 WWDILKKAKAGGLNVIQTYVFWNIHEPEKGQ-FNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVP 140 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p 140 (832)
-++.|+.+.++|++.|+... .+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~----~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFL----GNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEEC----CCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 34789999999999999954 3332210 0222 126899999999999986542 3431
Q ss_pred CeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 045037 141 NITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQ 183 (832)
Q Consensus 141 ~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 183 (832)
+.+.+.|+..+++..+++.+.++..+. + |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~~--l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCEE--L----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEc
Confidence 124556777787777778877776652 3 56666654
No 117
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=57.23 E-value=15 Score=39.72 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred ccccccCC---CCCccEEEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEE
Q 045037 464 PLEQWSVT---KDTTDYLWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYI 519 (832)
Q Consensus 464 ~~Eql~~t---~d~~GyllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~v 519 (832)
++-++++. +|.+|.+||+.++.++.+. +.-.++...|++.+++-.|.|+|||.-+
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceee
Confidence 35555553 5689999999999876442 1122466789999999999999998754
No 118
>PRK12677 xylose isomerase; Provisional
Probab=56.81 E-value=72 Score=36.66 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeee---cchhHHHHHHHHHhcCCEEE-EeccccccccccCCCCCccc
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE---GNYNLTKFIKMIGDLGMYAT-LRVGPFIEAEWNYGGFPFWL 136 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL 136 (832)
.+++.+++++++|+..|+... +..--|+.+ -...+.++.++++++||.|. +-|.-|- -|.+-
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~------~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p~~~ 97 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD------DDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFT--------HPVFK 97 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc------cccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Ccccc
Confidence 478999999999999998731 111111111 11358999999999999977 4443111 12111
Q ss_pred ccCCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 137 REVPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 137 ~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
.+ .+-+.|+..++...+.+.+.++.-+
T Consensus 98 ---~g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 98 ---DG-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---CC-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 2455577777776666666666554
No 119
>PLN02361 alpha-amylase
Probab=56.22 E-value=23 Score=41.00 Aligned_cols=57 Identities=5% Similarity=-0.006 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEceeCC---ccCCCCCe-ee----eecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQTYVFWN---IHEPEKGQ-FN----FEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn---~hEp~~G~-fd----F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3456677999999998853322 12111221 22 3445799999999999999999864
No 120
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.81 E-value=20 Score=31.95 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=33.3
Q ss_pred ceEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEeccCcc
Q 045037 499 PVLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTIGLP 556 (832)
Q Consensus 499 ~~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~Grv 556 (832)
..|++.+-...++-||||+++|...... .+.+.. ...|.++|.+ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~~~---~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFWQP---DRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCCC---eEEeCC---CCCeeEEEEE-EcCCCCE
Confidence 4455544466999999999998766432 232321 2578888887 6666664
No 121
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=55.63 E-value=23 Score=44.49 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEE-ceeCC----ccCC-----CCCeeeeecchhHHHHHHHHHhcCCEEEEeccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQT-YVFWN----IHEP-----EKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~-yv~Wn----~hEp-----~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
+-+.|.+.|.-++++|+++|-+ +++=+ .|-- ..=.-.|.+..+|.+|++.|+++||.|||-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4456899999999999999976 34311 1110 001123557789999999999999999988644
No 122
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.88 E-value=92 Score=35.08 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=57.9
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecch--hHHHHHHHHHhcCCEEEEecccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
+|..|+ ..+..++.++++++.+|-.=.+++=|.+++- -+.|.|+..+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 566664 6778899999999999987777776766643 4677776543 7899999999999999999889987
No 123
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.69 E-value=31 Score=38.42 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCC---CCCeeeeecc--hhHHHHHHHHHhcCCEEEEecccccc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEP---EKGQFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
.+.-++.++++++.||-+=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456788999999999987776665433322 1234666433 38999999999999999999888774
No 124
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=54.35 E-value=25 Score=39.17 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=55.0
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecc--hhHHHHHHHHHhcCCEEEEeccccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIEA 125 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyica 125 (832)
+|..|+ ..+..++.++++++.+|-.=.+.+-+.+.. .-+.|+|+.. -|..+|++.+++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 455554 667789999999999998766665543333 3466777643 389999999999999999998888753
No 125
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=53.40 E-value=28 Score=39.06 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=54.1
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecch--hHHHHHHHHHhcCCEEEEeccccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIEA 125 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyica 125 (832)
+|..|. ..+..++.++++++.||-+=.+.+-+.+.. .-+.|+|+-.+ |..++++..++.|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455554 566788999999999998765555544443 34557766433 78999999999999999998888753
No 126
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=51.78 E-value=22 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCCEEEEec
Q 045037 99 YNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999875
No 127
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=51.44 E-value=21 Score=44.19 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccC---CCCC-----ee---e-------ee---cchhHHHHHHHHHhcCCEEEEec
Q 045037 65 ILKKAKAGGLNVIQT-YVFWNIHE---PEKG-----QF---N-------FE---GNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~f---d-------F~---g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.|.-+|++|+|+|.. +|+=...+ ...| -| | |. ...+|.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367899999999997 45411111 1111 01 1 11 24589999999999999999875
No 128
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=51.36 E-value=27 Score=40.48 Aligned_cols=70 Identities=14% Similarity=0.335 Sum_probs=49.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecch--hHHHHHHHHHhcCCEEEEecccccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIEAEWN 128 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyicaEw~ 128 (832)
..+..++.++.+++.|+-.=...+-..+.. ..+.|.|+..+ |...+++.+++.|++|++..-|+|+-+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 567788999999999998777766544333 44566665432 89999999999999999999888865543
No 129
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=51.15 E-value=30 Score=43.75 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=46.2
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEc-eeCCccCCCCC------eee-------eecchhHHHHHHHHHhcCCEEEEecccc
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTY-VFWNIHEPEKG------QFN-------FEGNYNLTKFIKMIGDLGMYATLRVGPF 122 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~y-v~Wn~hEp~~G------~fd-------F~g~~dl~~fl~~a~~~gL~Vilr~GPy 122 (832)
.+-+.|.+.|.-++++|+|+|-.- ++ +..+| ..| |.+..+|.+|++.|+++||.|||-.=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 345669999999999999999873 43 11112 112 4466899999999999999999987553
No 130
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=50.87 E-value=15 Score=37.26 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCceEEEEEcCeeeeeccc-ccc--------CCC-CCCceeeeccCcccccCCceeEEEEEEcC
Q 045037 645 TMSKGMVWVNGKSIGRYWV-SFL--------SPT-GKPSQSVYHIPRAFLKPKDNLLAIFEEIG 698 (832)
Q Consensus 645 g~gKG~vwVNG~nLGRYW~-~~~--------~~~-gGPQqtlYhVP~~~Lk~G~N~IvVfE~~g 698 (832)
.-++=+|.||| ..+..+. ... |.. |-.+.--+-||+..|++|.|+|.+=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34556899999 6666552 110 222 44444445589999999999997654444
No 131
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=50.80 E-value=13 Score=37.18 Aligned_cols=67 Identities=24% Similarity=0.172 Sum_probs=36.2
Q ss_pred EeeeccCCCCC--ccCCcccC--ceeCCChhH-HHHhHcCCCCceeeeec-CC-----CCCCCCCCCC--CCcceEEEEE
Q 045037 760 VEFASYGNPFG--ACGNYILG--NCSAPSSKR-IIEQYCLGKNRCAIPFD-QN-----IFDRERKLCP--NVPKNLAIQV 826 (832)
Q Consensus 760 I~~A~YGr~~~--~C~~~~~~--~C~~~~s~~-~v~~~C~Gk~~C~v~a~-~~-----~Fg~~~DPC~--gt~KyL~v~y 826 (832)
|..|-||.... .+.+.... .+..+.... +|.=.|.=+.++-.... .. =|- |||| |..|.|.|.|
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dS~L~l~~~~sKs~L~GF~---DP~p~~ge~K~L~V~Y 131 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALVKDSQLILPEGVSKSGLPGFY---DPCPFLGEPKQLRVRY 131 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEeecCEEEEcCCCchhhCCCCC---CCccccCCccEEEEEE
Confidence 78899999432 23211000 011111111 23334444555544433 11 355 9999 9999999999
Q ss_pred Eee
Q 045037 827 QCG 829 (832)
Q Consensus 827 ~C~ 829 (832)
...
T Consensus 132 ~f~ 134 (151)
T PF11875_consen 132 RFR 134 (151)
T ss_pred EEC
Confidence 874
No 132
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.57 E-value=40 Score=37.04 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=52.0
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCC--------CCCeeeeecc--hhHHHHHHHHHhcCCEEEEe
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP--------EKGQFNFEGN--YNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp--------~~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr 118 (832)
+|..|. ..+.-++.++++++.||-+=.+++=..+|.- .-+.|+|+-. -|..++++.+++.|++|++.
T Consensus 14 ~~qsr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~ 93 (292)
T cd06595 14 NWWSRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLN 93 (292)
T ss_pred hHhhCCcCCCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEE
Confidence 444552 6677889999999999987777665444431 2356777643 38999999999999999988
Q ss_pred cccc
Q 045037 119 VGPF 122 (832)
Q Consensus 119 ~GPy 122 (832)
.=|+
T Consensus 94 v~P~ 97 (292)
T cd06595 94 LHPA 97 (292)
T ss_pred eCCC
Confidence 7444
No 133
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=50.27 E-value=46 Score=34.13 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=55.9
Q ss_pred EEEeCCCC-----ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeee--eec-chhHHHHHHHHHhcCCEEEEeccc
Q 045037 50 GSIHYPRM-----PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFN--FEG-NYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 50 G~~hy~r~-----~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fd--F~g-~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
|.+||+|. +.++.+.-++.++..++.. ...|--.|..++.+. .+- ...+.+|++.++++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 89999875 3567888888888865432 112444454334322 111 137889999999999999999888
Q ss_pred ccc----ccc---cCCCCCcccccC
Q 045037 122 FIE----AEW---NYGGFPFWLREV 139 (832)
Q Consensus 122 yic----aEw---~~GG~P~WL~~~ 139 (832)
+-- +-. +....|.|+..+
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 521 111 145689999874
No 134
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=50.17 E-value=29 Score=46.79 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCe---e----------eeecchhHHHHHHHHHhcCCEEEEeccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQ---F----------NFEGNYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---f----------dF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+|. | .|.+..+|.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999874222 222221 1 2456789999999999999999988644
No 135
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=49.64 E-value=65 Score=34.43 Aligned_cols=96 Identities=10% Similarity=0.037 Sum_probs=55.7
Q ss_pred CCeeeee-cchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 90 KGQFNFE-GNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 90 ~G~fdF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
.|...+. +..++..+++.|++.|++|++..| .|..+. +. .+ ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~---~~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPE---FT----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCc---ch----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 335789999999999999999986 122111 11 01 12332 334678888888876
Q ss_pred cccccccCCceEEeccccccccchhccccccHHHHHHHHHHHHhcC
Q 045037 169 AQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRLN 214 (832)
Q Consensus 169 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 214 (832)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 543 3455666765321 1112245566666665544
No 136
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=49.57 E-value=53 Score=40.11 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=76.8
Q ss_pred CEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccc
Q 045037 42 GKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGP 121 (832)
Q Consensus 42 G~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GP 121 (832)
+++-+.+++..|+++.+.+.=-++|++-.++|.+.+-|-.++ |.+ .+.+|++.+++.++.||...-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEeee
Confidence 345688999999887665544456666678999999997754 444 7899999998888888888777
Q ss_pred cccc--------cccCCCCCcccccC-CCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 122 FIEA--------EWNYGGFPFWLREV-PNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 122 yica--------Ew~~GG~P~WL~~~-p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
-... +|..-=+|.|+.+. .. .. +...++++-.++..++++.|.
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 4332 35455579999862 11 11 223567777777777777775
No 137
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=49.40 E-value=19 Score=30.60 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=27.4
Q ss_pred eEEeCCcceEEEEEECCEEEEEEeccCCCceeEEeeccccCCCccEEEEEEeccCccc
Q 045037 500 VLRIASLGHMMHGFVNGHYIGSGHGTNKENSFVFQKPIILKPGINHISLLGVTIGLPD 557 (832)
Q Consensus 500 ~L~v~~~~D~a~VfVng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN 557 (832)
.|.|...=..|.|||||+++|... ..+. .++.|.+.|.| +.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCee
Confidence 455555556789999999999432 2222 14567665554 4444433
No 138
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=47.96 E-value=29 Score=44.08 Aligned_cols=21 Identities=10% Similarity=0.377 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCCEEEEec
Q 045037 99 YNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999864
No 139
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.85 E-value=29 Score=42.76 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC---C-----eee----------eecc-----hhHHHHHHHHHhcCCEEEEec
Q 045037 65 ILKKAKAGGLNVIQT-YVFWNIHEPEK---G-----QFN----------FEGN-----YNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~fd----------F~g~-----~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.|.-+|++|+|+|+. +|+=...|+.. | -|| |... .+|.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999997 45421111110 1 011 2221 479999999999999999874
No 140
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=47.79 E-value=55 Score=40.33 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHcCCCEEEE---------------ceeCCccCCCCCeeeeecchhHHH-HHHHHHhcCCEEEEeccccc
Q 045037 60 EMWWDILKKAKAGGLNVIQT---------------YVFWNIHEPEKGQFNFEGNYNLTK-FIKMIGDLGMYATLRVGPFI 123 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~---------------yv~Wn~hEp~~G~fdF~g~~dl~~-fl~~a~~~gL~Vilr~GPyi 123 (832)
+--...|+.+|++|+|||=. |.+| -|=| |+-|. +++ ...++.+.|++|..|-.||-
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADL-----FNRVAWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCC-----cCHHHHHHHHhhCCEEEEecccee
Confidence 44677899999999999964 4456 3333 22221 122 34558899999999999985
Q ss_pred cc---------cccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccc
Q 045037 124 EA---------EWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEY 188 (832)
Q Consensus 124 ca---------Ew~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 188 (832)
-. +++..+-|+... |+-..| =.+|..+|++|++.|.+-|+.+ .+|=++|.+-+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 21 121112221111 110122 1246788999999999988853 356677765553
No 141
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=47.33 E-value=37 Score=40.30 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCC---CeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEK---GQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~---G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
.++++++.||++|++.-+.-|-|.-.=|.- +.-+=.|......+|+...++||...+-- | =| .+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 589999999999999999999999887753 34677788888999999999999965543 0 13 4788887
Q ss_pred c-CCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 E-VPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~-~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+ +-+-.-+..=..|+++++-=|++...+++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 6 44432222234577777766777777666
No 142
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.43 E-value=1.2e+02 Score=33.55 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEcee----CCcc-CCC--CCeeeeecchhHHHHHHHHHhcCCEEEEecc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVF----WNIH-EPE--KGQFNFEGNYNLTKFIKMIGDLGMYATLRVG 120 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~h-Ep~--~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (832)
+.++-++.|+.|...|+|.+..|+- +.-+ |.. +|.|.= .++.++++.|++.||.||--+-
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCC
Confidence 5578899999999999999999863 3211 111 233333 4999999999999999996653
No 143
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=46.40 E-value=55 Score=36.23 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=59.8
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcC--CEEEEeccc--------cccccccCCCCCc
Q 045037 65 ILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLG--MYATLRVGP--------FIEAEWNYGGFPF 134 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g--L~Vilr~GP--------yicaEw~~GG~P~ 134 (832)
.|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.| +.|+...-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 455556789888877653 6666 8999999999999 446666655 24 6777788999
Q ss_pred ccccC-CCeeecCCC-hhhHHHHHHHHHHHHHHHHh
Q 045037 135 WLREV-PNITFRSDN-PPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 135 WL~~~-p~~~~R~~~-p~y~~~~~~~~~~l~~~l~~ 168 (832)
|+.+. .. . .++ ...+++--++..++++.|.+
T Consensus 234 ~l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99862 11 1 233 33556666777777777763
No 144
>PLN00196 alpha-amylase; Provisional
Probab=45.81 E-value=43 Score=39.10 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEEc-eeCCc--cCCCCCe-ee-----eecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQTY-VFWNI--HEPEKGQ-FN-----FEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-fd-----F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.|.-+|++|+++|-+. ++=+. |---+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467788899999999885 43221 2111211 22 3334699999999999999999875
No 145
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.32 E-value=1.3e+02 Score=29.93 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEcee--CCccCC----CCCeeeeecchhHHHHHHHHHhcCCEEE-EeccccccccccCCCC
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVF--WNIHEP----EKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEAEWNYGGF 132 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~--Wn~hEp----~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyicaEw~~GG~ 132 (832)
+.-++..+.+++.|+..+....+ |..... .+.... .....+.+.+++|++.|...+ +.+|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDERE-EALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHH-HHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhH-HHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45667788889999997776554 433211 111111 123489999999999999855 55542 0
Q ss_pred CcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccccc
Q 045037 133 PFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTI 191 (832)
Q Consensus 133 P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 191 (832)
+.+ -......-++.+.+.+++|+++.+++ | +.+-+||..+..
T Consensus 96 ~~~--------~~~~~~~~~~~~~~~l~~l~~~a~~~------g---v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PSG--------PEDDTEENWERLAENLRELAEIAEEY------G---VRIALENHPGPF 137 (213)
T ss_dssp SSS--------TTSSHHHHHHHHHHHHHHHHHHHHHH------T---SEEEEE-SSSSS
T ss_pred ccc--------cCCCHHHHHHHHHHHHHHHHhhhhhh------c---ceEEEecccCcc
Confidence 000 01122345667777888888888753 2 446688988754
No 146
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=45.24 E-value=93 Score=33.86 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=69.9
Q ss_pred eEEEEEEEeCCCCChh----hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCE--EEEe
Q 045037 45 ELFFSGSIHYPRMPPE----MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMY--ATLR 118 (832)
Q Consensus 45 ~~~~sG~~hy~r~~~~----~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~--Vilr 118 (832)
.+.+++..||++-|.. .=.++|++-.++|.+.+-|-. .||.+ .+.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4788999988764332 222456666688999888865 35666 899999999999765 5555
Q ss_pred cccccc-------ccccCCCCCcccccCCCeeec--CCC-hhhHHHHHHHHHHHHHHHHh
Q 045037 119 VGPFIE-------AEWNYGGFPFWLREVPNITFR--SDN-PPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 119 ~GPyic-------aEw~~GG~P~WL~~~p~~~~R--~~~-p~y~~~~~~~~~~l~~~l~~ 168 (832)
.-|-.. ++|..-.+|.|+.+. +. .++ ...+++.-++..++++.+..
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 545332 236666789999762 22 123 34556666677777777653
No 147
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=45.02 E-value=66 Score=36.36 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=61.0
Q ss_pred eEEEeCCeEEECCEEeEEEEEEEeCCCC-ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeec--chhHHHHHH
Q 045037 30 SVTYDGRSLIINGKRELFFSGSIHYPRM-PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEG--NYNLTKFIK 106 (832)
Q Consensus 30 ~v~~d~~~~~~dG~p~~~~sG~~hy~r~-~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g--~~dl~~fl~ 106 (832)
.|.+. .+.+.|.+++++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|.-+.+
T Consensus 81 ~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~ 151 (335)
T PRK08673 81 VVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAE 151 (335)
T ss_pred EEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHH
Confidence 35553 36777888888988 3333 67778888899999999999999983 5444578875 456777778
Q ss_pred HHHhcCCEEEEec
Q 045037 107 MIGDLGMYATLRV 119 (832)
Q Consensus 107 ~a~~~gL~Vilr~ 119 (832)
.|++.||.++-.+
T Consensus 152 ~~~~~Gl~v~tev 164 (335)
T PRK08673 152 AREETGLPIVTEV 164 (335)
T ss_pred HHHHcCCcEEEee
Confidence 8999999988775
No 148
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.46 E-value=44 Score=35.86 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEecc
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVG 120 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (832)
....++-++.+|+.||++|++- .|..+++ ..+..++|+.++++||+|+--.|
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS---------~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEIS---------DGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEc---------CCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 3667778889999999999764 4766765 34888999999999999997776
No 149
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=43.25 E-value=10 Score=33.49 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCC
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGM 113 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL 113 (832)
....|-.-++.+.. .||.|..|||. +|.+||++|.|--+
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTpv 58 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTPV 58 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-TT
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCCe
Confidence 55678887777665 48999999999 99999999987443
No 150
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.90 E-value=56 Score=36.85 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=51.5
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEce----------eCCccCCC---------CCeeeeec-c--hhHHHHHH
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYV----------FWNIHEPE---------KGQFNFEG-N--YNLTKFIK 106 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv----------~Wn~hEp~---------~G~fdF~g-~--~dl~~fl~ 106 (832)
+|..|. ..+.-++.++++++.||.+=.+++ .|+-..-. =+.++|.. . -|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 566678999999999998766655 24432211 13444432 1 27999999
Q ss_pred HHHhcCCEEEEecccccc
Q 045037 107 MIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 107 ~a~~~gL~Vilr~GPyic 124 (832)
.+++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 151
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=41.67 E-value=63 Score=31.51 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCEEEEecccccccccc-CCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 100 NLTKFIKMIGDLGMYATLRVGPFIEAEWN-YGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 100 dl~~fl~~a~~~gL~Vilr~GPyicaEw~-~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
||.-||++|++.|+.|++=.-| +++.|- .-|+| ++.-+.++++|-.+++.
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998866644 455552 11221 34556678888777774
No 152
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=40.96 E-value=1.1e+02 Score=33.73 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEcee----CCccCC----------------CCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVF----WNIHEP----------------EKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.-+ ++..+++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 37888999999999999999999986 754311 12344444 99999999999999999
Q ss_pred Eec
Q 045037 117 LRV 119 (832)
Q Consensus 117 lr~ 119 (832)
--+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 655
No 153
>PLN02877 alpha-amylase/limit dextrinase
Probab=40.06 E-value=49 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCCEEEEec
Q 045037 99 YNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+++.++++.|+++||.|||--
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 154
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=39.04 E-value=1.1e+02 Score=36.59 Aligned_cols=277 Identities=15% Similarity=0.277 Sum_probs=130.3
Q ss_pred EEeEEEEEEEe------CCCCChhhHHHHHHHH---HHcCCCEEEEcee--------CCccCCCCCeee---eecc----
Q 045037 43 KRELFFSGSIH------YPRMPPEMWWDILKKA---KAGGLNVIQTYVF--------WNIHEPEKGQFN---FEGN---- 98 (832)
Q Consensus 43 ~p~~~~sG~~h------y~r~~~~~W~d~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~fd---F~g~---- 98 (832)
|++.=++|++= ..+.+++.=++.|+.+ +-+|++.+++.+- +.+-+. |+.|+ |+=.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~-~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDV-PGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-S-TTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCC-CCCCccccCCccccch
Confidence 44444677763 2334554433334433 5589999999885 333322 33222 2211
Q ss_pred hhHHHHHHHHHhc--CCEEEEeccccccccccCCCCCcccccCCCe----eecC-CChhhHHHHHHHHHHHHHHHHhccc
Q 045037 99 YNLTKFIKMIGDL--GMYATLRVGPFIEAEWNYGGFPFWLREVPNI----TFRS-DNPPFKYHMKEFTKMIIDMMKDAQL 171 (832)
Q Consensus 99 ~dl~~fl~~a~~~--gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R~-~~p~y~~~~~~~~~~l~~~l~~~~~ 171 (832)
..+-.+|+.|++. +|+++.-| |. .|+|+.....+ .|+. ..+.|.++...||.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 1234677877764 57777665 42 79999874332 2442 3457888888888888888873
Q ss_pred ccccCCceEEeccccccccc-------h-hccc-cccHHHHH-HHHHHHHhcCC--ccceEEeccc--CCC---CCcccc
Q 045037 172 YASQGGPIILSQVENEYNTI-------Q-LAFR-ELGTRYVH-WAGTMAVRLNT--GVPWVMCKQK--DAP---GPVINT 234 (832)
Q Consensus 172 ~~~~gGpII~~QiENEyg~~-------~-~~~~-~~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~---~~~~~t 234 (832)
+|=+|-++-+.||.... . +.+. +..++|+. +|.-++++.|+ ++-+++.|.. +.+ ..++.-
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 46699999999997641 1 1111 12356665 47778888877 7766665521 112 111110
Q ss_pred ------cC--CCCC--CCCCCC------CCCCCCCceeeccccccccccCCCCCC---CCHHHHHHHHHHHHHcCCeeee
Q 045037 235 ------CN--GRNC--GDTFTG------PNKPSKPVLWTENWTARYRVFGDPPSR---RSAENLAFSVARFFSKNGTLAN 295 (832)
Q Consensus 235 ------~n--g~~~--~~~~~~------~~~~~~P~~~~E~~~Gwf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 295 (832)
+. +++| ++.... ...|++.++.||-..|.- .|+..... ..++..+..+-.-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 01 1222 111100 235889999999876531 22211111 1133444444444556643 2
Q ss_pred eeEe------ecccCCCCC--CCCCccccccCCCCCCccCCCCChhHHHHHHHHHHHHH
Q 045037 296 YYMY------YGGTNYGRL--GSSFVTTRYYDEAPIDEYGMLREPKWGHLRDLHSALRL 346 (832)
Q Consensus 296 ~YM~------hGGTNfG~~--g~~~~~TSYDY~Apl~E~G~~~tpKy~~lr~l~~~~~~ 346 (832)
+-++ .||-|++.- .++.++.. +. +|. ..+|.|+.|....+|++.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~P 425 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRP 425 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-T
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCC
Confidence 2222 488887543 22222111 11 121 247899999887777654
No 155
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=38.92 E-value=97 Score=33.54 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=65.1
Q ss_pred EEEEEEeC----CCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcC--CEEEEecc
Q 045037 47 FFSGSIHY----PRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLG--MYATLRVG 120 (832)
Q Consensus 47 ~~sG~~hy----~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g--L~Vilr~G 120 (832)
-+++..|+ ..-+.+.=-++|++=-++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.||+..-
T Consensus 130 ~igva~yPe~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~ 196 (274)
T cd00537 130 SIGVAAYPEGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIM 196 (274)
T ss_pred ccccccCCCcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeecc
Confidence 34554444 3333333234444444669999998764 4445 8999999999998 55777776
Q ss_pred cccc-------ccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 121 PFIE-------AEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 121 Pyic-------aEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
|-.. +++-.-++|.|+.+.=+ ....+....++.-.++..++++.+.+
T Consensus 197 p~~s~~~l~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 197 PLTSYKQAKRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred ccCCHHHHHHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6433 35555678999986210 01122233455666777777777763
No 156
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.21 E-value=49 Score=36.00 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCEEEEceeCC--ccCCCCCeeeeecchhHHHHHHHHHhcCCEEEE
Q 045037 63 WDILKKAKAGGLNVIQTYVFWN--IHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vil 117 (832)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 5678899999999988875411 111111223444 666778999999998643
No 157
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=36.12 E-value=1.2e+02 Score=31.85 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=64.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeee-cchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE-GNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWL 136 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~-g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL 136 (832)
.+.+++..++.++++|+.++.+|....- ....|..+ |..|=..-+++|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 5788999999999999999999998765 22333333 67889999999999998 333 34444
Q ss_pred ccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 137 REVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 137 ~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
.-+.+. .+..+...+..||+.+.+.|..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 332221 2233678899999999998874
No 158
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.91 E-value=44 Score=38.86 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCEEEE-cee---CCccCCCCCee-----eeecchhHHHHHHHHHhcCCEEEEec
Q 045037 64 DILKKAKAGGLNVIQT-YVF---WNIHEPEKGQF-----NFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~f-----dF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.|.-+|.+|+++|-+ +++ -..|---.-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888899999999954 333 11221110000 57778899999999999999999763
No 159
>PLN02784 alpha-amylase
Probab=34.28 E-value=78 Score=40.03 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCC--eee-------eecchhHHHHHHHHHhcCCEEEEec
Q 045037 63 WDILKKAKAGGLNVIQTYVFWNIHEPEKG--QFN-------FEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~fd-------F~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+++..++++|+++|-+.=+..-..+ .| .+| |....+|.++++.|+++||+||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677889999999988643221111 12 122 3334699999999999999999875
No 160
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=34.23 E-value=1.9e+02 Score=33.80 Aligned_cols=94 Identities=22% Similarity=0.360 Sum_probs=57.3
Q ss_pred EeCCCC--ChhhHHHHHHHHHHcCCCEEEE-cee----------------CC--ccCCCCCeeeeecchhHHHHHHHHH-
Q 045037 52 IHYPRM--PPEMWWDILKKAKAGGLNVIQT-YVF----------------WN--IHEPEKGQFNFEGNYNLTKFIKMIG- 109 (832)
Q Consensus 52 ~hy~r~--~~~~W~d~l~k~ka~G~N~V~~-yv~----------------Wn--~hEp~~G~fdF~g~~dl~~fl~~a~- 109 (832)
-+.+++ +-+.|+++|+.++++|.|+|.. ++- ++ +.++ .....| .++.++++.++
T Consensus 12 Tvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~-~~~~~~---~~v~~~v~~~~~ 87 (423)
T PF14701_consen 12 TVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPP-GKESTF---EDVKEFVKEAEK 87 (423)
T ss_pred EEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCC-CccccH---HHHHHHHHHHHH
Confidence 344554 5568999999999999999974 221 11 1111 011222 39999998885
Q ss_pred hcCCEEEEeccccccccccCCC-CCcccccCCCeeecCCChhhHHHH
Q 045037 110 DLGMYATLRVGPFIEAEWNYGG-FPFWLREVPNITFRSDNPPFKYHM 155 (832)
Q Consensus 110 ~~gL~Vilr~GPyicaEw~~GG-~P~WL~~~p~~~~R~~~p~y~~~~ 155 (832)
++||.++.-. =|+--. ==.||..+|+.-.-..+.++++.+
T Consensus 88 ~~~ll~~~Dv------V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 88 KYGLLSMTDV------VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred HcCceEEEEE------eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 7899866443 122211 246999999865444455565544
No 161
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=33.80 E-value=99 Score=34.39 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEcee----CCccCC------CCC---------eeeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVF----WNIHEP------EKG---------QFNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
+.+.-++.|+.|...++|++..++- |.+-=+ ..| .|.-+ |+..+++.|++.||.||--
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~---di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKE---DIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHH---HHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHH---HHHHHHHHHHHcCCceeee
Confidence 7788999999999999999999885 443321 112 34444 9999999999999999965
Q ss_pred c
Q 045037 119 V 119 (832)
Q Consensus 119 ~ 119 (832)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 162
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=33.79 E-value=95 Score=38.07 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=54.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEc-ee-----CCc--cCCCCCeee---------eecchhHHHHHHHHHhcCCEEEEec-
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTY-VF-----WNI--HEPEKGQFN---------FEGNYNLTKFIKMIGDLGMYATLRV- 119 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~y-v~-----Wn~--hEp~~G~fd---------F~g~~dl~~fl~~a~~~gL~Vilr~- 119 (832)
.+.+|+ .++.+|+++|-+- ++ |.. ---..|-|| |....|++++++.|+++||+||+-.
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 667775 6888999999863 33 442 222345566 2334699999999999999999654
Q ss_pred -------cccccccccCCCCCccc
Q 045037 120 -------GPFIEAEWNYGGFPFWL 136 (832)
Q Consensus 120 -------GPyicaEw~~GG~P~WL 136 (832)
-|+.-||...+-.|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 24888888888888877
No 163
>PLN03059 beta-galactosidase; Provisional
Probab=33.46 E-value=1.6e+02 Score=37.36 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCceEEEEEEeCCCCC-------CCeEEEeCCCce-EEEEEcCeeeeeccccccCCCCCCceeeeccCcc-cccCCceeE
Q 045037 621 GPLTWYKTYFDAPEGN-------DPLAIEVATMSK-GMVWVNGKSIGRYWVSFLSPTGKPSQSVYHIPRA-FLKPKDNLL 691 (832)
Q Consensus 621 ~~p~fYr~tF~i~~~~-------d~~~Ld~~g~gK-G~vwVNG~nLGRYW~~~~~~~gGPQqtlYhVP~~-~Lk~G~N~I 691 (832)
.+-.||+++|+++... ++ .|.+.+.+. -+|||||.-+|.-+.+- .+++ +- ++.+ =|+.|.|+|
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~----~~~~--~~-~~~~v~l~~g~n~L 540 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL----SNPK--LT-FSQNVKLTVGINKI 540 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec----CCcc--eE-EecccccCCCceEE
Confidence 4679999999987542 23 377777654 68999999999865322 2333 33 5543 367899999
Q ss_pred EEEEE
Q 045037 692 AIFEE 696 (832)
Q Consensus 692 vVfE~ 696 (832)
-||=+
T Consensus 541 ~iLse 545 (840)
T PLN03059 541 SLLSV 545 (840)
T ss_pred EEEEE
Confidence 77754
No 164
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.58 E-value=92 Score=25.15 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEE
Q 045037 59 PEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA 115 (832)
Q Consensus 59 ~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V 115 (832)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998886 3333234555666543 4899999999999765
No 165
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=30.88 E-value=1.3e+02 Score=38.65 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=57.3
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecc--hhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
+|..|+ +.+.-++.++++++.||-+=.+++-|.++.- -+.|.|+-. -|..++++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 566664 5566788999999999998888777666653 345666543 3889999999999999988778888764
No 166
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.51 E-value=1.6e+02 Score=32.92 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEcee--CCcc---CC------------------------CCCeeeeecchhHHHHHHHH
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVF--WNIH---EP------------------------EKGQFNFEGNYNLTKFIKMI 108 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~--Wn~h---Ep------------------------~~G~fdF~g~~dl~~fl~~a 108 (832)
+.+..++.|+.|...++|++..++- |.+- .| ..|.|.- .++..+++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHH
Confidence 7899999999999999999998653 3221 11 1222322 4999999999
Q ss_pred HhcCCEEEEec
Q 045037 109 GDLGMYATLRV 119 (832)
Q Consensus 109 ~~~gL~Vilr~ 119 (832)
++.|+.||--+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999998554
No 167
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.50 E-value=17 Score=37.12 Aligned_cols=63 Identities=22% Similarity=0.397 Sum_probs=44.2
Q ss_pred EEEEEEEeCCCC---ChhhHHHHHHHHHHcCCCEE--EEceeCCccCCCCC--eeeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 46 LFFSGSIHYPRM---PPEMWWDILKKAKAGGLNVI--QTYVFWNIHEPEKG--QFNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 46 ~~~sG~~hy~r~---~~~~W~d~l~k~ka~G~N~V--~~yv~Wn~hEp~~G--~fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
..-+|--.|.|+ .|-.-+ +-+.++|++.+ .|-| +.| -|||....+|..|+++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-------KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-------KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-------ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 345666667775 333333 34567888764 4444 344 599988889999999999999987765
No 168
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.49 E-value=72 Score=39.51 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCEEEE-ceeCCccCCCC---C-----------------eeeeec-----chhHHHHHHHHHhcCCEEEEe
Q 045037 65 ILKKAKAGGLNVIQT-YVFWNIHEPEK---G-----------------QFNFEG-----NYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----------------~fdF~g-----~~dl~~fl~~a~~~gL~Vilr 118 (832)
.|.-+|.+|+++|+. +|+.-..|+.. | .|-=.+ .+.|..+++.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999997 68866666543 2 222222 247889999999999999987
Q ss_pred c
Q 045037 119 V 119 (832)
Q Consensus 119 ~ 119 (832)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 169
>PRK10658 putative alpha-glucosidase; Provisional
Probab=30.15 E-value=1.3e+02 Score=37.08 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=48.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeeeeecch--hHHHHHHHHHhcCCEEEEeccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFNFEGNY--NLTKFIKMIGDLGMYATLRVGPFIEA 125 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fdF~g~~--dl~~fl~~a~~~gL~Vilr~GPyica 125 (832)
+.+.-.+.++++++.|+-+=.+.+-+.++... -+.|.|+-.+ |...+++..++.|++|++..=|||..
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 44556788899999998754444333333332 2466665433 78999999999999999999888853
No 170
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=30.15 E-value=60 Score=28.97 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=26.0
Q ss_pred ccCCceEEeccccc-cccchhcc----c-cccHHHHHHHHHHH---HhcCCccceEE
Q 045037 174 SQGGPIILSQVENE-YNTIQLAF----R-ELGTRYVHWAGTMA---VRLNTGVPWVM 221 (832)
Q Consensus 174 ~~gGpII~~QiENE-yg~~~~~~----~-~~~~~y~~~l~~~~---~~~g~~vp~~~ 221 (832)
++...|.+|+|=|| -++....+ + .....|.+||++++ |+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34567999999999 55221111 1 12456677776664 56677777654
No 171
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.37 E-value=1.2e+02 Score=33.60 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCC--CCC--eeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEP--EKG--QFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp--~~G--~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.++..++.++.+++.|.+.|-+|.-+..--+ .++ .++-+ .+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e---~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEE---ELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHH---HHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999975422111 112 23333 78999999999999887764
No 172
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=29.33 E-value=96 Score=38.76 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=48.9
Q ss_pred EeCCCC---ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecc----hhHHHHHHHHHhcCCEEEEecccccc
Q 045037 52 IHYPRM---PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGN----YNLTKFIKMIGDLGMYATLRVGPFIE 124 (832)
Q Consensus 52 ~hy~r~---~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~----~dl~~fl~~a~~~gL~Vilr~GPyic 124 (832)
+|..|+ .-+.-+|..+.+++||+..= ++|+-.--.++-=||+=+ .++..|++-.++.|+++|+-+-|+|.
T Consensus 300 f~~~RwgY~nls~~~dvv~~~~~agiPld---~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 300 FQLCRWGYKNLSVVRDVVENYRAAGIPLD---VIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ceecccccccHHHHHHHHHHHHHcCCCcc---eeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccc
Confidence 556664 44556899999999999821 334433333333344421 36899999999999999999888875
Q ss_pred cc
Q 045037 125 AE 126 (832)
Q Consensus 125 aE 126 (832)
.-
T Consensus 377 ~~ 378 (805)
T KOG1065|consen 377 TN 378 (805)
T ss_pred cC
Confidence 33
No 173
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.80 E-value=1.6e+02 Score=33.64 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.|..-++.+++.|++.|.-+...-.-... .+.+ -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~--~~~~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDE--NGKI----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccc--cccc----CCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987765422222211 1112 24688999999999999775
No 174
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=28.77 E-value=1.1e+02 Score=34.59 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=56.2
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCe-eeeecchhHHHHHHHHHhcCCEEEEecccccccc
Q 045037 48 FSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQ-FNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAE 126 (832)
Q Consensus 48 ~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaE 126 (832)
+|=++.+.|.+.+.=...|++|...||..|=| ++|.|.+.. -.|. -+..+++.|+++|++||+-.-|=|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56678888888888888999999999987654 567776542 2244 688899999999999999988766444
No 175
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.53 E-value=3.5e+02 Score=29.24 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEE--EEeccccccccccCCCCCcccccCC
Q 045037 63 WDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA--TLRVGPFIEAEWNYGGFPFWLREVP 140 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~p 140 (832)
.+-++.+++.|+++|++++-. |+--..+.....+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 467899999999999997731 1111111111237888889999998863 33334542
Q ss_pred CeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 141 NITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 141 ~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+.+-+.|+..+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12445567777777677766666554
No 176
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=28.40 E-value=2.8e+02 Score=32.36 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCEEEEcee----CCccCCCCCeeeeecchhHHHHHHHHHhcCCEE--EEeccccccccccCCCCCcccc
Q 045037 64 DILKKAKAGGLNVIQTYVF----WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA--TLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V--ilr~GPyicaEw~~GG~P~WL~ 137 (832)
.-++.+.+.|+|++++++- |..-+..+. ++++|.++++++||.+ ++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~~--------~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSDE--------TIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCHH--------HHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4678899999999999984 765544443 8999999999998852 44456663
Q ss_pred cCCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 138 EVPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 138 ~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+.+-+.|+..++...++|.+-+++-.
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12444566666665555555555544
No 177
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.38 E-value=3.3e+02 Score=27.49 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHHHHHHHHHH
Q 045037 155 MKEFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAV 211 (832)
Q Consensus 155 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 211 (832)
+..-+.+++..++ ..+.++|.| .||.|+-.-.+....+.|++.|-.+-+
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3344555666665 245688887 599996433344567888887765543
No 178
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.91 E-value=2.7e+02 Score=31.51 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=46.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEcee----CCccC----------------------------CCCCeeeeecchhHHHH
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVF----WNIHE----------------------------PEKGQFNFEGNYNLTKF 104 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~fdF~g~~dl~~f 104 (832)
.+.+..++.|+.|...++|+...++- |.+-- +..|.|.- .|+..+
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36889999999999999999998873 43211 11244443 499999
Q ss_pred HHHHHhcCCEEEEec
Q 045037 105 IKMIGDLGMYATLRV 119 (832)
Q Consensus 105 l~~a~~~gL~Vilr~ 119 (832)
++.|++.|+.||--+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999665
No 179
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=27.90 E-value=1e+02 Score=34.80 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=29.5
Q ss_pred eCCeEEECCEEeEEEEEEEeCCCC-ChhhHHHHH-HHHHHcCCCEEEEc
Q 045037 34 DGRSLIINGKRELFFSGSIHYPRM-PPEMWWDIL-KKAKAGGLNVIQTY 80 (832)
Q Consensus 34 d~~~~~~dG~p~~~~sG~~hy~r~-~~~~W~d~l-~k~ka~G~N~V~~y 80 (832)
|.+.+.|||||+++| +.+.-+ ....+-+.+ +.+|++|+.-+-.=
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyii 195 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYII 195 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEEE
Confidence 778999999999998 444333 223344444 56688999866543
No 180
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=2.2e+02 Score=34.30 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=50.6
Q ss_pred CCEEeEEEEEEEe--CCC-CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCC---------CeeeeecchhHHHHHHHH
Q 045037 41 NGKRELFFSGSIH--YPR-MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEK---------GQFNFEGNYNLTKFIKMI 108 (832)
Q Consensus 41 dG~p~~~~sG~~h--y~r-~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~---------G~fdF~g~~dl~~fl~~a 108 (832)
+|++. +++|-+- |-| |.+|+=++.+++++.+|++ ||.. .|+. --|+-+-.--|..+|..|
T Consensus 12 ~g~r~-fiCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlY----APKDDyKHR~~WRElY~vEEa~~L~~Li~aA 83 (891)
T KOG3698|consen 12 VGNRK-FICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLY----APKDDYKHRSLWRELYNVEEATYLRNLIEAA 83 (891)
T ss_pred cccce-eEEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeee----cccchhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45544 4566654 778 6999999999999999999 5653 1221 123333334688899999
Q ss_pred HhcCCEEEEecc
Q 045037 109 GDLGMYATLRVG 120 (832)
Q Consensus 109 ~~~gL~Vilr~G 120 (832)
+++++-.+-.+.
T Consensus 84 ke~~i~F~YAiS 95 (891)
T KOG3698|consen 84 KENNINFVYAIS 95 (891)
T ss_pred HhcCceEEEEcC
Confidence 999999886654
No 181
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=27.66 E-value=1.9e+02 Score=32.31 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEcee-CCc-cCCCCC-----eeeeecc--hhHHHHHHHHHhcCCEEEEeccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVF-WNI-HEPEKG-----QFNFEGN--YNLTKFIKMIGDLGMYATLRVGPFIEA 125 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~-Wn~-hEp~~G-----~fdF~g~--~dl~~fl~~a~~~gL~Vilr~GPyica 125 (832)
..+.-++.++++++.||-+=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 6777899999999999987777664 632 233233 2444432 289999999999999999998787754
No 182
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.26 E-value=1.4e+02 Score=35.15 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=46.2
Q ss_pred EeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 52 IHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 52 ~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.-|.+.|.+.-++.++++.++|++.|+++.+-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45666788888899999999999999999976653 268889999999999876654
No 183
>PRK09267 flavodoxin FldA; Validated
Probab=27.18 E-value=3.4e+02 Score=26.85 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=48.6
Q ss_pred ECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 40 INGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 40 ~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
+..-..++++...|....++..|.+-+++++...++-..+.+|= ......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 34556789999999877778889999998888777777777773 221110001122 245667777888896654
No 184
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=27.02 E-value=1.4e+02 Score=29.10 Aligned_cols=87 Identities=11% Similarity=0.190 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeee-----cchhHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE-----GNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGF 132 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~-----g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~ 132 (832)
.+.+.+..++.|+++|+..+.+|.... ....+|+ |..|=..-+..|+++|+. . |-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~-----~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGG-----RETSDFTYGYAQGVADARDAVAAARALGFP----A-----------GT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccc-----ccccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CC
Confidence 468899999999999999999998762 2223443 557888999999999983 2 34
Q ss_pred CcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 133 PFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 133 P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
|-++.-+ .-..+..+...+..||+.+.+.|..
T Consensus 96 ~IYfavD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 96 PIYFAVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEEEE------TS-B-HH-------HHHHHHHHHGG
T ss_pred EEEEEee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 4455322 1234667788888899999888874
No 185
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=26.51 E-value=2.7e+02 Score=26.27 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=38.6
Q ss_pred EEEEEEeecCCCCCccccCCCCceEEeCCcceEEEEEECCEEEEEEeccCC-----CceeEEeeccccCC-CccEEEEEE
Q 045037 477 YLWHTTSISLDGFHLPLREKVLPVLRIASLGHMMHGFVNGHYIGSGHGTNK-----ENSFVFQKPIILKP-GINHISLLG 550 (832)
Q Consensus 477 yllYrT~i~~~~~~~~~~~~~~~~L~v~~~~D~a~VfVng~~vG~~~~~~~-----~~~~~~~~~~~l~~-g~~~L~ILv 550 (832)
.+.++..|..+.+. .-++.+. ..|.+.+||||+.+-...+... .........+.+.+ +.+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G-------~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETG-------TYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSE-------EEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCc-------eEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 55678888765432 1233333 6789999999999977664322 00011122233444 467777766
Q ss_pred eccC
Q 045037 551 VTIG 554 (832)
Q Consensus 551 En~G 554 (832)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 186
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=26.47 E-value=55 Score=33.27 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhc-CCEEEEeccccccccc---cCCCCCcccccCC
Q 045037 99 YNLTKFIKMIGDL-GMYATLRVGPFIEAEW---NYGGFPFWLREVP 140 (832)
Q Consensus 99 ~dl~~fl~~a~~~-gL~Vilr~GPyicaEw---~~GG~P~WL~~~p 140 (832)
..+.+|++.++++ |..++|=.+++..... .....|.||.+++
T Consensus 103 ~~~~~f~~~v~~~~G~~~~iY~~~~~~~~~~~~~~~~~~lWiA~Y~ 148 (184)
T cd06525 103 DYVLRFIEEFEKLSGLKVGIYTYTSFINNNLDSRLSSYPLWIANYG 148 (184)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecHHHHHHhccccccCCCeEEEecc
Confidence 4678999999998 9988887777432221 2345678888754
No 187
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.20 E-value=84 Score=33.62 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCC----CCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPE----KGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.+++.++.++++|..+|.+. ..+... +-.+... ...|.++.+.|+++|+.+.+-+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 356677889999999999653 223211 1112221 1368899999999999998887
No 188
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=26.04 E-value=1.1e+02 Score=34.47 Aligned_cols=115 Identities=14% Similarity=0.225 Sum_probs=65.8
Q ss_pred EEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCCCeeecCCChhhHHHHH
Q 045037 77 IQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMK 156 (832)
Q Consensus 77 V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~ 156 (832)
|.+.|+|+.+--+. -=...++.|+++|++|+-- |.-||+ +-+.|+.. + |.. ++ +...
T Consensus 33 vD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~---l-L~~-~~---~~~~ 89 (339)
T cd06547 33 VDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLED---F-LKK-DE---DGSF 89 (339)
T ss_pred hheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHH---H-hcc-Cc---ccch
Confidence 66677777643220 0134688999999999742 234665 34556653 1 221 11 2234
Q ss_pred HHHHHHHHHHHhcccccccCCceEEeccccccccchhccccccHHHHHHHHHHHHhc--CCccceEEe
Q 045037 157 EFTKMIIDMMKDAQLYASQGGPIILSQVENEYNTIQLAFRELGTRYVHWAGTMAVRL--NTGVPWVMC 222 (832)
Q Consensus 157 ~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~~ 222 (832)
++.++|++..+.+.+ .| +.+-+||..+.. .....-++|++.|++++++. +..|-|+-.
T Consensus 90 ~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~--~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 90 PVADKLVEVAKYYGF----DG--WLINIETELGDA--EKAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred HHHHHHHHHHHHhCC----Cc--eEeeeeccCCcH--HHHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 667778887775433 34 777888887311 01123456778888888764 445667643
No 189
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.93 E-value=3.3e+02 Score=31.81 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=59.2
Q ss_pred CeEEECCEEeEEEEEEEeCCCC---ChhhHHHHHHHHHHcCCCE--E--EEceeCCccCCCCCeeeeecchhHHHHHHHH
Q 045037 36 RSLIINGKRELFFSGSIHYPRM---PPEMWWDILKKAKAGGLNV--I--QTYVFWNIHEPEKGQFNFEGNYNLTKFIKMI 108 (832)
Q Consensus 36 ~~~~~dG~p~~~~sG~~hy~r~---~~~~W~d~l~k~ka~G~N~--V--~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a 108 (832)
+...+.+.-|+++.+.=+-++. .++.=+.-.+.+++.|++. | ...-.-|+--|.+..++++ ..-|.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 4466778999999887776654 3344555566778888863 3 2222278888888887776 33677788999
Q ss_pred HhcCCE-EEEecc
Q 045037 109 GDLGMY-ATLRVG 120 (832)
Q Consensus 109 ~~~gL~-Vilr~G 120 (832)
++.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 668887
No 190
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.89 E-value=67 Score=36.80 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred ceeEEEeCCeEEECCEEeEEEEEEEeCCCC-ChhhHHHHHHHHHHc-CCCEEEEceeCCccCCCCCeeeeecchhHHHHH
Q 045037 28 KRSVTYDGRSLIINGKRELFFSGSIHYPRM-PPEMWWDILKKAKAG-GLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFI 105 (832)
Q Consensus 28 ~~~v~~d~~~~~~dG~p~~~~sG~~hy~r~-~~~~W~d~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl 105 (832)
+..|-.-+-+|-+...+-.+.+=|+.|+-. |.+.|+-+|.-+.++ -=||+.+-| =|=+.|--++|+-. -|.+++
T Consensus 150 ~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kia 225 (447)
T KOG0259|consen 150 GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIA 225 (447)
T ss_pred CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHH
Confidence 345555555566665555556667776664 888899999999987 789988866 47788888899888 899999
Q ss_pred HHHHhcCCEEEEe
Q 045037 106 KMIGDLGMYATLR 118 (832)
Q Consensus 106 ~~a~~~gL~Vilr 118 (832)
++|+++|+-||--
T Consensus 226 e~A~klgi~vIaD 238 (447)
T KOG0259|consen 226 ETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHhCCeEEeh
Confidence 9999999998854
No 191
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=25.54 E-value=68 Score=35.72 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCE--EE-Eec
Q 045037 61 MWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMY--AT-LRV 119 (832)
Q Consensus 61 ~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~--Vi-lr~ 119 (832)
.|++.+.+++..|+ +|++.-+=-..|..|+.|. |+.+.+++|..+||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6788888889999999873 889999999999986 44 776
No 192
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=25.48 E-value=6e+02 Score=28.08 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLR 137 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 137 (832)
.-+.-+-+|+.++.-+. +|++|- +...-|+.++.+|.+.|++|+|.. |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45778899999998887 999983 233478899999999999999886 443
Q ss_pred cCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccc--ccchhccccccHHHHHHHHHHHHhcCC
Q 045037 138 EVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVENEY--NTIQLAFRELGTRYVHWAGTMAVRLNT 215 (832)
Q Consensus 138 ~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy--g~~~~~~~~~~~~y~~~l~~~~~~~g~ 215 (832)
. ++ ...+++ .++..+.+ +..--.|..+=|-||- +... -...-.+|+...|.+++++|.
T Consensus 111 d--d~---------~~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~~--tasql~~~I~~vrsav~~agy 170 (305)
T COG5309 111 D--DI---------HDAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRNDL--TASQLIEYIDDVRSAVKEAGY 170 (305)
T ss_pred c--ch---------hhhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCCC--CHHHHHHHHHHHHHHHHhcCC
Confidence 2 22 122332 33333332 1122468889999994 4321 112345899999999999999
Q ss_pred ccceEEeccc
Q 045037 216 GVPWVMCKQK 225 (832)
Q Consensus 216 ~vp~~~~~~~ 225 (832)
++|..+.++.
T Consensus 171 ~gpV~T~dsw 180 (305)
T COG5309 171 DGPVTTVDSW 180 (305)
T ss_pred CCceeecccc
Confidence 9998887653
No 193
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=25.45 E-value=2.7e+02 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhcCCEEEEeccccccccccC-----C--CCCcccccCCC
Q 045037 99 YNLTKFIKMIGDLGMYATLRVGPFIEAEWNY-----G--GFPFWLREVPN 141 (832)
Q Consensus 99 ~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~-----G--G~P~WL~~~p~ 141 (832)
..+..|++.+++.|.+++|=.+++-....-. . ..|.||.+++.
T Consensus 108 ~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 108 SAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred HHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 3578899999989988877776653222111 1 13578887654
No 194
>PLN02389 biotin synthase
Probab=25.30 E-value=87 Score=35.96 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCEEEEcee--CCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 62 WWDILKKAKAGGLNVIQTYVF--WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~~yv~--Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
=++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|.
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 357788899999998766321 11111111112444 66788899999999863
No 195
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.13 E-value=1.5e+02 Score=32.29 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=41.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEe
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLR 118 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr 118 (832)
.|.+.=++++++..+.|+..|+++++.+- ++ .+...++.|++.|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~~---~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------VR---NLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------HH---HHHHHHHHHHHCCCeEEEE
Confidence 46666788999999999999999987654 23 7899999999999987753
No 196
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.07 E-value=3.4e+02 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEceeCCccCCC-CCeee---ee-cchhHHHHHHHHHhcCCEEEE
Q 045037 56 RMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPE-KGQFN---FE-GNYNLTKFIKMIGDLGMYATL 117 (832)
Q Consensus 56 r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~fd---F~-g~~dl~~fl~~a~~~gL~Vil 117 (832)
.+.++.-+..-+.+++.|+..+.+-. ..|.+. .+.-| .. ....+.+.|++|++.|..+|.
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~ 117 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ 117 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45677777778888999999876421 112111 11100 00 112578899999999999764
No 197
>PRK06703 flavodoxin; Provisional
Probab=24.97 E-value=3.1e+02 Score=26.58 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=59.0
Q ss_pred ECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeee---cchhHHHHHHHHHhcCCEEE
Q 045037 40 INGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFE---GNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 40 ~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~---g~~dl~~fl~~a~~~gL~Vi 116 (832)
+..-..++++-..+-.-.+|..+++-+..+++.-++.....+|- .++++ .......+-+.+++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg--------~g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG--------SGDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc--------cCCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 33445566655454333455567777888876666665666662 12211 12355667777889999887
Q ss_pred EeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 117 LRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 117 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
.++= . ++.-.++..-++.++.|.++|++.++
T Consensus 118 ~~~~-------~-------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEGL-------K-------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccCe-------E-------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 7641 0 01111123567888888888887765
No 198
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=24.78 E-value=59 Score=34.02 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=51.7
Q ss_pred CCEEe-EEEEEEEeCCC-CChhhHHHHHHHHHHcCCCEEEEceeCCccC--------CCCC----eeeeecchhHHHHHH
Q 045037 41 NGKRE-LFFSGSIHYPR-MPPEMWWDILKKAKAGGLNVIQTYVFWNIHE--------PEKG----QFNFEGNYNLTKFIK 106 (832)
Q Consensus 41 dG~p~-~~~sG~~hy~r-~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hE--------p~~G----~fdF~g~~dl~~fl~ 106 (832)
.++++ .+.-|.-+..| ||.+.|.+.++++++.| ..+.++|.-.| -.++ ..++.|..+|..++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 34444 44444444444 79999999999999998 55668887666 1223 588888889999999
Q ss_pred HHHhcCCEEEEeccc
Q 045037 107 MIGDLGMYATLRVGP 121 (832)
Q Consensus 107 ~a~~~gL~Vilr~GP 121 (832)
+.+...+.|-.-.||
T Consensus 180 li~~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 180 LISRADLVIGNDTGP 194 (247)
T ss_dssp HHHTSSEEEEESSHH
T ss_pred HHhcCCEEEecCChH
Confidence 999999988777775
No 199
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=24.77 E-value=61 Score=36.18 Aligned_cols=87 Identities=22% Similarity=0.483 Sum_probs=49.8
Q ss_pred EEEEEEe------CCCCChhhHHHHHHHHHHc-CCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 47 FFSGSIH------YPRMPPEMWWDILKKAKAG-GLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 47 ~~sG~~h------y~r~~~~~W~d~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+.||. | +.+++.+-|++-+++--.. |+|-++-| |.+-++.. + ...++|++|+++|-+.|--
T Consensus 105 ~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~-----~---~~A~lLkl~akYGGy~iWs- 172 (324)
T PF08306_consen 105 PSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS-----E---HFADLLKLCAKYGGYFIWS- 172 (324)
T ss_dssp EEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH-----H---HHHHHHHHHHHTT-EEEEE-
T ss_pred ecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh-----H---HHHHHHHHHHHhCceEEee-
Confidence 45666 8 4556777777777777665 88888875 55555544 3 7899999999999988322
Q ss_pred cccccccccCC-CCCcccccCCCeeecCCChhhHHHHHHH
Q 045037 120 GPFIEAEWNYG-GFPFWLREVPNITFRSDNPPFKYHMKEF 158 (832)
Q Consensus 120 GPyicaEw~~G-G~P~WL~~~p~~~~R~~~p~y~~~~~~~ 158 (832)
+-.++ .+=-|+-. ..++.|++++++|
T Consensus 173 ------~~~N~~am~k~~~~-------~~~~~~~~A~~~y 199 (324)
T PF08306_consen 173 ------DQNNPIAMEKWFGE-------QRNPEFKDACEKY 199 (324)
T ss_dssp ---------GGGHHHHHCCC-------CCSHHHHHHHHHH
T ss_pred ------cCCChHHHHHhhhh-------ccCHHHHHHHHHh
Confidence 11111 11223321 2567788888766
No 200
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.72 E-value=1e+02 Score=33.15 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=32.5
Q ss_pred EECCEEeEEEEEEEeCCCC-ChhhHHHHHHHHHHcCCCEEE
Q 045037 39 IINGKRELFFSGSIHYPRM-PPEMWWDILKKAKAGGLNVIQ 78 (832)
Q Consensus 39 ~~dG~p~~~~sG~~hy~r~-~~~~W~d~l~k~ka~G~N~V~ 78 (832)
.+.|+++..+.|.+|+..- ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4679999999999997765 444457889999999998764
No 201
>PRK07094 biotin synthase; Provisional
Probab=24.34 E-value=64 Score=35.72 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCEEEEcee---CCccCCCCCeeeeecchhHHHHHHHHHhcCCEE
Q 045037 63 WDILKKAKAGGLNVIQTYVF---WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA 115 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V 115 (832)
++.+++||++|++.|.+.+- -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 35677777777777765442 11222111223444 6777788888888754
No 202
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=24.22 E-value=1.5e+02 Score=33.05 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEeccccccccccCCCCCcccccCC---
Q 045037 64 DILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRVGPFIEAEWNYGGFPFWLREVP--- 140 (832)
Q Consensus 64 d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p--- 140 (832)
..+...++.|.+||=..- + =.-.||..+..+.+++.||.+|...|+|.-+.|+ .|+...|
T Consensus 52 ~e~~~~~a~Gg~TIVD~T--------~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~i~~ 114 (316)
T COG1735 52 AELKRLMARGGQTIVDAT--------N----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRPIEE 114 (316)
T ss_pred HHHHHHHHcCCCeEeeCC--------c----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCCHHH
Confidence 356667778999885332 1 0113699999999999999999999999988876 6776543
Q ss_pred -----------Ce----------eecCCChhhHHHHHHHHHHHHHHH
Q 045037 141 -----------NI----------TFRSDNPPFKYHMKEFTKMIIDMM 166 (832)
Q Consensus 141 -----------~~----------~~R~~~p~y~~~~~~~~~~l~~~l 166 (832)
++ +.-+.++.+....++.+++.+..=
T Consensus 115 ~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~ 161 (316)
T COG1735 115 LAEFVVKEIEEGIAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAH 161 (316)
T ss_pred HHHHHHHHHHhcccCCccccceeeeccCcccCCHHHHHHHHHHHHHh
Confidence 10 223557788888888888776543
No 203
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=24.15 E-value=3.9e+02 Score=30.16 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=46.6
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEcee----CCccCCC------CC------eeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVF----WNIHEPE------KG------QFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G------~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.+..++.|+.|....+|+...++- |.+--+. .| .|.- .|+..+++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEec
Confidence 36889999999999999999998863 5553321 23 3333 499999999999999999765
No 204
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=24.13 E-value=9.9e+02 Score=27.57 Aligned_cols=113 Identities=10% Similarity=0.057 Sum_probs=68.6
Q ss_pred eeEEEeCCeEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHc-CC-CEEEEceeCCccCCCCCeeeeecchhHHHHHH
Q 045037 29 RSVTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAG-GL-NVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIK 106 (832)
Q Consensus 29 ~~v~~d~~~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~-G~-N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~ 106 (832)
..|+.-+..|.--|-||-.+.+ ..-.| ..+...+++.+++.+ ++ -.|+..++| +.. .|+.++.+
T Consensus 11 ~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~~~ 76 (378)
T TIGR02635 11 LKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEELAR 76 (378)
T ss_pred cEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHHHH
Confidence 4566667777777888744322 11112 344455566666655 33 455666666 222 36889999
Q ss_pred HHHhcCCEEE-EeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHH
Q 045037 107 MIGDLGMYAT-LRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMK 167 (832)
Q Consensus 107 ~a~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~ 167 (832)
+++++||.|. +-|+=+- -|.+ ..+ .|-..||..++.+-.+..+.++.-+
T Consensus 77 ~l~~~GL~v~~i~p~~f~--------~~~~---~~G-SLt~pD~~vR~~AIe~~k~~idiA~ 126 (378)
T TIGR02635 77 YAEELGLKIGAINPNLFQ--------DDDY---KFG-SLTHPDKRIRRKAIDHLLECVDIAK 126 (378)
T ss_pred HHHHcCCceeeeeCCccC--------Cccc---CCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 7765110 1111 112 4677788888888777777776655
No 205
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=24.03 E-value=94 Score=33.30 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-Eeccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEA 125 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyica 125 (832)
..+.-++.++++|++|+. |+.++ +|. ...++.|++.|-..| |-+|||..|
T Consensus 108 ~~~~l~~~i~~l~~~gI~-VSLFi-----DPd------------~~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 108 QAEKLKPIIERLKDAGIR-VSLFI-----DPD------------PEQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred CHHHHHHHHHHHHHCCCE-EEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 446677889999999994 88877 554 356899999999977 999999764
No 206
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=23.54 E-value=98 Score=33.29 Aligned_cols=50 Identities=18% Similarity=0.443 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-Eeccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEA 125 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyica 125 (832)
..+.-++.++++|++|+ -|+.+| +|.+ ..++.|++.|-..| |-+|||..+
T Consensus 111 ~~~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 111 QFDKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34566788999999999 678777 5543 45899999999966 999999875
No 207
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.41 E-value=1.2e+02 Score=32.39 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=56.5
Q ss_pred eEEEEEEEeCCC-CChhhHHHHHHHHHHcCCCEEEEceeCCccCC-----------CCCeeeeecchhHHHHHHHHHhcC
Q 045037 45 ELFFSGSIHYPR-MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-----------EKGQFNFEGNYNLTKFIKMIGDLG 112 (832)
Q Consensus 45 ~~~~sG~~hy~r-~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-----------~~G~fdF~g~~dl~~fl~~a~~~g 112 (832)
+.+..|+-+..| |+.+.|.+.++++++.|++.|-+.-+ .|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~---~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGP---AERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech---hhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 444455555555 79999999999999888877754322 211 245578888889999999999999
Q ss_pred CEEEEeccccccc
Q 045037 113 MYATLRVGPFIEA 125 (832)
Q Consensus 113 L~Vilr~GPyica 125 (832)
+.|=...||.--|
T Consensus 201 l~I~~Dsg~~HlA 213 (279)
T cd03789 201 LVVTNDSGPMHLA 213 (279)
T ss_pred EEEeeCCHHHHHH
Confidence 9888888765433
No 208
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.95 E-value=3.3e+02 Score=28.68 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHcCCCE-EEE--ceeCCccCC---CCC--eeeeec-------------chhHHHHHHHHHhcCCEEE
Q 045037 58 PPEMWWDILKKAKAGGLNV-IQT--YVFWNIHEP---EKG--QFNFEG-------------NYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G--~fdF~g-------------~~dl~~fl~~a~~~gL~Vi 116 (832)
-++.-.+.++++|+.|+.+ |+| |++|...+. .=. -+|+-+ +..+-+.|+.+.++|.++.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3466788999999999864 444 455522221 112 233322 1244466777888899988
Q ss_pred EeccccccccccCCCCCcccccCCCeeecCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccc----------
Q 045037 117 LRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPPFKYHMKEFTKMIIDMMKDAQLYASQGGPIILSQVEN---------- 186 (832)
Q Consensus 117 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN---------- 186 (832)
+|. |. .|++ ++++.-++++.+|+..+. +. +|-...--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 886 22 2554 345555555555554331 00 221111111
Q ss_pred -ccccchhccccccHHHHHHHHHHHHhcCCcc
Q 045037 187 -EYNTIQLAFRELGTRYVHWAGTMAVRLNTGV 217 (832)
Q Consensus 187 -Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 217 (832)
+|-.. ......++.|+++++.+++.|+.+
T Consensus 180 ~~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22110 112367889999999999999875
No 209
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.92 E-value=1.6e+02 Score=33.00 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=45.6
Q ss_pred EeE-EEEEEEeCCC-CChhhHHHHHHHHHHcCCCEEEEceeCCccCC-------------CCCeeeeecchhHHHHHHHH
Q 045037 44 REL-FFSGSIHYPR-MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEP-------------EKGQFNFEGNYNLTKFIKMI 108 (832)
Q Consensus 44 p~~-~~sG~~hy~r-~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp-------------~~G~fdF~g~~dl~~fl~~a 108 (832)
+++ +.-|+-+..| ||.+.|.+.++.+++.|+..| +++.-.|. .+...|+.|..+|..+..+.
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 260 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI 260 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH
Confidence 444 3334434444 899999999999988887655 44443221 12345666666677777666
Q ss_pred HhcCCEEEEeccc
Q 045037 109 GDLGMYATLRVGP 121 (832)
Q Consensus 109 ~~~gL~Vilr~GP 121 (832)
+...++|=--.||
T Consensus 261 ~~a~l~v~nDSGp 273 (352)
T PRK10422 261 DHAQLFIGVDSAP 273 (352)
T ss_pred HhCCEEEecCCHH
Confidence 6666655555543
No 210
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.91 E-value=1.1e+02 Score=32.65 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCC-CeeeeecchhHHHHHHHHHhcCCEEEEecc
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEK-GQFNFEGNYNLTKFIKMIGDLGMYATLRVG 120 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~fdF~g~~dl~~fl~~a~~~gL~Vilr~G 120 (832)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+-+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4578889999999999998631100011111 01110 013678889999999999988873
No 211
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=22.54 E-value=1e+02 Score=35.06 Aligned_cols=44 Identities=30% Similarity=0.675 Sum_probs=37.6
Q ss_pred CCCCCeeeee-c---------chhHHHHH--HHHHhcCCEEEEeccccccccccCCC
Q 045037 87 EPEKGQFNFE-G---------NYNLTKFI--KMIGDLGMYATLRVGPFIEAEWNYGG 131 (832)
Q Consensus 87 Ep~~G~fdF~-g---------~~dl~~fl--~~a~~~gL~Vilr~GPyicaEw~~GG 131 (832)
|-.||+|.|+ | +.+..|++ +.|++.|+-+-+-|=| +.+.|+..|
T Consensus 203 EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 203 EVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred cccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 6899999995 2 47888887 8999999999999977 999998866
No 212
>PRK09875 putative hydrolase; Provisional
Probab=22.54 E-value=1.5e+02 Score=32.82 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=56.5
Q ss_pred EEEeCCeEEECCEEeEEEEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHh
Q 045037 31 VTYDGRSLIINGKRELFFSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGD 110 (832)
Q Consensus 31 v~~d~~~~~~dG~p~~~~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~ 110 (832)
+++-+..++++..++. +......-..+.=...|+.+|++|.+||= |..+ ..-.||...+.+++++
T Consensus 8 ~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~~ 72 (292)
T PRK09875 8 YTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMRE 72 (292)
T ss_pred cceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHHH
Confidence 4555555665553211 11111111345556678889999999983 2221 1124799999999999
Q ss_pred cCCEEEEeccccccccccCCCCCccccc
Q 045037 111 LGMYATLRVGPFIEAEWNYGGFPFWLRE 138 (832)
Q Consensus 111 ~gL~Vilr~GPyicaEw~~GG~P~WL~~ 138 (832)
-|+.||..+|-|.-. -+|.|+..
T Consensus 73 tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 73 TGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred hCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 999999999988532 26788874
No 213
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.50 E-value=2.8e+02 Score=22.94 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEcee-CCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVF-WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
..-.+.++.+.+.|+|..+++.. ....+...-.+.+++ .+.+++++..++.|..|+
T Consensus 13 G~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 13 GQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeee
Confidence 35567788899999999999864 111111122455555 466799999999997554
No 214
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.10 E-value=3.3e+02 Score=30.38 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=46.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEce----eCCccC---CC---CC----eeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYV----FWNIHE---PE---KG----QFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv----~Wn~hE---p~---~G----~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
.+.+..++.|+.|...++|+...++ -|.+-- |+ .| .|.- .|+..+++.|++.|+.||--+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee
Confidence 4789999999999999999999997 375421 11 22 2333 499999999999999999665
No 215
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=21.88 E-value=76 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCceEEEEEcCeeeeecc
Q 045037 644 ATMSKGMVWVNGKSIGRYW 662 (832)
Q Consensus 644 ~g~gKG~vwVNG~nLGRYW 662 (832)
.--.+|.|||||++|.|.=
T Consensus 52 e~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 52 ERPTRGKILVNGHDLSRLK 70 (223)
T ss_pred hcCCCceEEECCeeccccc
Confidence 3356799999999999964
No 216
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.40 E-value=1.8e+02 Score=27.48 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=31.3
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 57 MPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 57 ~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
.+++...+.++.++++|+..|=..- | ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~---------g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQP---------G-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-T---------T-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEc---------c-------hHHHHHHHHHHHcCCEEE
Confidence 4889999999999999987664422 1 266889999999999865
No 217
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.39 E-value=74 Score=36.15 Aligned_cols=60 Identities=18% Similarity=0.090 Sum_probs=42.3
Q ss_pred EEEEEeCCCCChhhHHHHHHHHHHcCCCEEEEcee---CCccCCCCCeeeeecchhHHHHHHHHHhcCCE
Q 045037 48 FSGSIHYPRMPPEMWWDILKKAKAGGLNVIQTYVF---WNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMY 114 (832)
Q Consensus 48 ~sG~~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~ 114 (832)
++-+.++.-+. ++.++.||++|+|.|++.|- -..++-.....+++ ++.+.++.++++|+.
T Consensus 89 it~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 89 FTFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 44466665555 36788999999999999984 22333333344555 888999999999975
No 218
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.36 E-value=67 Score=36.28 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCEEE-----EceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 62 WWDILKKAKAGGLNVIQ-----TYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 62 W~d~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
-++.++++|++|++.+. ++..--++.-.++....+ ...+.++.|+++|+.+-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~~ 205 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKTN 205 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCcc
Confidence 35668888888887554 222222233334433333 55678999999999753
No 219
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.16 E-value=1.2e+02 Score=32.25 Aligned_cols=60 Identities=15% Similarity=-0.046 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEEEec
Q 045037 60 EMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYATLRV 119 (832)
Q Consensus 60 ~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vilr~ 119 (832)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999764333211111111100112366778889999999999987
No 220
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.08 E-value=4.3e+02 Score=21.17 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCe----eeee--cchhHHHHHHHHHhcCCEEE
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQ----FNFE--GNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~----fdF~--g~~dl~~fl~~a~~~gL~Vi 116 (832)
.|....+.++.+.+.|+|.+++...=...+-.+|. +.++ +..+++.+++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 35567899999999999999876431111001233 3343 33578899999999997664
No 221
>PRK07534 methionine synthase I; Validated
Probab=21.01 E-value=4.1e+02 Score=30.02 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=43.7
Q ss_pred HHHHHHHHhc-CCEEEEeccccccccccCCCCCcccccCCCeeecCCChh-hHHHHHHHHHHHHHHHHhcccccccCCce
Q 045037 102 TKFIKMIGDL-GMYATLRVGPFIEAEWNYGGFPFWLREVPNITFRSDNPP-FKYHMKEFTKMIIDMMKDAQLYASQGGPI 179 (832)
Q Consensus 102 ~~fl~~a~~~-gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~~p~-y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 179 (832)
..++++..+. .+.+++.| |.|.|.|... .... ..+|. |.+.+++| . ..|=.|
T Consensus 221 ~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~~--~~~~-~~~p~~~~~~~~~~--------~------~~Ga~i 274 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKG---------NAGIPKYVDG--HIHY-DGTPELMAEYAVLA--------R------DAGARI 274 (336)
T ss_pred HHHHHHHHhcCCCeEEEEc---------CCCCcccCCC--cccc-CCCHHHHHHHHHHH--------H------HcCCcE
Confidence 5556655443 57788887 7899988642 2212 22443 33444444 2 224456
Q ss_pred EEeccccccccchhccccccHHHHHHHHHHHHh
Q 045037 180 ILSQVENEYNTIQLAFRELGTRYVHWAGTMAVR 212 (832)
Q Consensus 180 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 212 (832)
| |. +|| ...+|++.|++++..
T Consensus 275 I--------GG---CCG-TtP~hI~~la~~l~~ 295 (336)
T PRK07534 275 I--------GG---CCG-TMPEHLAAMRAALDA 295 (336)
T ss_pred E--------ee---ecC-CCHHHHHHHHHHHcc
Confidence 6 43 356 788999999998864
No 222
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.93 E-value=1.9e+02 Score=31.50 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=48.3
Q ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHH-hcCCEEEEecc
Q 045037 54 YPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIG-DLGMYATLRVG 120 (832)
Q Consensus 54 y~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~-~~gL~Vilr~G 120 (832)
-.+...+.=.+..+.+-++|++.|++..+....+...|..-|.....+.++.+..+ +.-+-+++|++
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 34568888889999999999999999998876656667777774445555555543 44455667775
No 223
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.79 E-value=1.8e+02 Score=35.50 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=45.0
Q ss_pred EeCCCCChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE
Q 045037 52 IHYPRMPPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT 116 (832)
Q Consensus 52 ~hy~r~~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi 116 (832)
+=|.|.|.+.-+..++++++.|+.+|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 55667788888899999999999999999877653 378999999999999854
No 224
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.57 E-value=2.2e+02 Score=34.53 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcC--CEEEEecccccc-------ccccCCCCCcc
Q 045037 65 ILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLG--MYATLRVGPFIE-------AEWNYGGFPFW 135 (832)
Q Consensus 65 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~g--L~Vilr~GPyic-------aEw~~GG~P~W 135 (832)
+|++-.++|.+.+-|-.| ||.+ .+.+|++.|+++| +.||...-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444679999998763 6777 8899999999998 667777777543 44665668999
Q ss_pred cccCCCeeecCCChhhHHHHHHHHHHHHHHHHh
Q 045037 136 LREVPNITFRSDNPPFKYHMKEFTKMIIDMMKD 168 (832)
Q Consensus 136 L~~~p~~~~R~~~p~y~~~~~~~~~~l~~~l~~ 168 (832)
+.+.=+ ....++...++.--++..++++.|.+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 986211 12345556666777777788887763
No 225
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.34 E-value=1.2e+02 Score=32.47 Aligned_cols=50 Identities=16% Similarity=0.449 Sum_probs=38.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEceeCCccCCCCCeeeeecchhHHHHHHHHHhcCCEEE-Eeccccccc
Q 045037 58 PPEMWWDILKKAKAGGLNVIQTYVFWNIHEPEKGQFNFEGNYNLTKFIKMIGDLGMYAT-LRVGPFIEA 125 (832)
Q Consensus 58 ~~~~W~d~l~k~ka~G~N~V~~yv~Wn~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~Vi-lr~GPyica 125 (832)
..+.-++.++++|++|+ -|+.++ +|. ...++.|++.|-..| |-+|||..+
T Consensus 108 ~~~~l~~~i~~l~~~gI-~VSLFi-----DP~------------~~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGI-EVSLFI-----DAD------------KDQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 44567788999999998 566664 554 345889999999966 999999764
No 226
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.14 E-value=78 Score=35.57 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEE-Ec-eeCC---ccCCCCCeeeeecchhHHHHHHHHHhcCCEE
Q 045037 63 WDILKKAKAGGLNVIQ-TY-VFWN---IHEPEKGQFNFEGNYNLTKFIKMIGDLGMYA 115 (832)
Q Consensus 63 ~d~l~k~ka~G~N~V~-~y-v~Wn---~hEp~~G~fdF~g~~dl~~fl~~a~~~gL~V 115 (832)
++.+++||++|++.+- +. ..-+ .+.-.++...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 6789999999999874 11 0000 001123333333 5578999999999975
Done!