BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045038
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12010|YO092_YEAST Uncharacterized membrane protein YOL092W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL092W PE=1
SV=1
Length = 308
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%)
Query: 170 MEHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVR 229
++ + Q G+L A +Y+G R+PQI LN KR S EG++ L F+FA + N T++ S++V
Sbjct: 206 LQINWMAQIFGYLSALLYLGSRIPQILLNFKRKSCEGISFLFFLFACLGNTTFIFSVIVI 265
Query: 230 TTEWESIKANMPWLLDAIVCVLLDLFIILQYIYYRYFRK 268
+ +W+ + N WL+ +I + +D I Q+ Y+ +K
Sbjct: 266 SLDWKYLIMNASWLVGSIGTLFMDFVIFSQFFIYKRNKK 304
>sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans
GN=laat-1 PE=1 SV=2
Length = 311
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 175 FGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWE 234
G +G + A Y GGR+PQI N + S EGL+ MF + AN TY +S+++ TT W
Sbjct: 200 LGYIIGSMAAVCYFGGRIPQIIKNYRHSSCEGLSLTMFYIIVAANFTYGISVLLATTSWL 259
Query: 235 SIKANMPWLLDAIVCVLLDLFIILQYIYYR 264
+ ++PWL ++ C D II QY YR
Sbjct: 260 YLLRHLPWLAGSLGCCCFDAVIISQYYLYR 289
>sp|Q10482|STM1_SCHPO Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=stm1 PE=1 SV=1
Length = 271
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 180 GWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVV--RTTEWESIK 237
G + + +Y R+PQI N K S EGL+ + FV A V N +Y SI+V +
Sbjct: 182 GCISSVLYFCARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPASDYLNYTY 241
Query: 238 ANMPWLLDAIVCVLLDLFIILQYIYYR 264
AN+PW+L A + LD++I Q+I YR
Sbjct: 242 ANLPWILGAFSTIFLDIYIFYQFIKYR 268
>sp|P38279|RTC2_YEAST Protein RTC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RTC2 PE=1 SV=1
Length = 296
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 176 GQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWES 235
Q LG+L A +Y+G R+PQI LN KR S EG++ L F+FA + N ++++S++ +
Sbjct: 208 AQILGYLSAILYLGSRIPQIVLNFKRKSCEGVSFLFFLFACLGNTSFIISVLSAS----- 262
Query: 236 IKANMPWLLDAIVCVLLDLFIILQYIYY 263
WL+ + +L+D + +Q+ Y
Sbjct: 263 ------WLIGSAGTLLMDFTVFIQFFLY 284
>sp|Q06328|YD352_YEAST Vacuolar integral membrane protein YDR352W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YDR352W PE=1
SV=1
Length = 317
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 171 EHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRT 230
++S G L W+ A+ Y+G R+PQ+ N R S +GL+P +F L+ N+TY LSI
Sbjct: 180 KNSQLGTILSWIGASFYVGARIPQLIKNYNRKSTDGLSPFLFATTLLCNITYNLSIFTSC 239
Query: 231 ------TEWESIKANMPWLLDAIVCVLLDLFIILQY 260
+ E I +P++ + + DL QY
Sbjct: 240 RFLDNQNKREFIVNELPFIFGSAGTIAFDLIYFYQY 275
>sp|Q5ZJX0|LAAT1_CHICK Lysosomal amino acid transporter 1 homolog OS=Gallus gallus
GN=PQLC2 PE=2 SV=1
Length = 303
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 175 FGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRT---- 230
G +G + + +Y+ RLPQI+ N +R S G++ L+F ++ N+ Y S++++
Sbjct: 189 IGFAIGSISSVLYLCSRLPQIYTNYRRKSTAGVSFLLFALVMLGNLLYGTSVLLKNPEPG 248
Query: 231 -TEWESIKANMPWLLDAIVCVLLDLFIILQYIYYR 264
+E + I ++PWL+ ++ + LD+ I Q++ YR
Sbjct: 249 QSEGDYILHHLPWLIGSLGVLSLDVIISFQFLAYR 283
>sp|Q6ZP29|LAAT1_HUMAN Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2
PE=1 SV=1
Length = 291
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 152 AGAMAA---GFHSRTLLNGNN-----MEHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGS 203
AG +AA F R LL+ + G +G + + +Y+ RLPQI N R S
Sbjct: 152 AGPVAAPREAFRGRALLSVESGSKPFTRQEVIGFVIGSISSVLYLLSRLPQIRTNFLRKS 211
Query: 204 VEGLNPLMFVFALVANVTYVLSIVVRT-----TEWESIKANMPWLLDAIVCVLLDLFIIL 258
+G++ +F ++ N Y LS++++ +E + ++PWL+ ++ +LLD I +
Sbjct: 212 TQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSEGSYLLHHLPWLVGSLGVLLLDTIISI 271
Query: 259 QYIYYR 264
Q++ YR
Sbjct: 272 QFLVYR 277
>sp|Q8C4N4|LAAT1_MOUSE Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2
PE=2 SV=1
Length = 293
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 158 GFHSRTLLN---GNN--MEHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMF 212
GF RTLL+ GN + G +G + +Y+ RLPQI N R S +G++ +F
Sbjct: 161 GFRGRTLLSVEPGNKPFTKKEVIGFVIGSASSLLYLLSRLPQIRTNFIRQSTQGISYSLF 220
Query: 213 VFALVANVTYVLSIVVRT-----TEWESIKANMPWLLDAIVCVLLDLFIILQYIYYRYFR 267
++ N Y LS++++ +E + ++PWL+ ++ +LLD I +Q++ YR
Sbjct: 221 ALVMLGNTLYGLSVLLKNPEVGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLVYRSHE 280
Query: 268 KKSADYGE 275
+A E
Sbjct: 281 TAAASERE 288
>sp|P19327|5HT1A_RAT 5-hydroxytryptamine receptor 1A OS=Rattus norvegicus GN=Htr1a PE=3
SV=1
Length = 422
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 9 LVLQGVYYDHIFKRLKGRHTKATRREEEEKKPLAPKSGDAAIPIPKASVKSSPRREYYYT 68
L+L V Y IF+ + R K R+ E KK G ++ P PK S+ P +
Sbjct: 208 LLLMLVLYGRIFRAARFRIRKTVRKVE--KKGAGTSLGTSSAPPPKKSLNGQPGSGDWRR 265
Query: 69 SARSLASSGTPPFRTFLRAAQSGPSALGLDNDSSSDDEAAAAAPTLSSSGNPPTSQPRPI 128
A + A GTP +R DDEA + GN + + P+
Sbjct: 266 CAENRA-VGTPCTNGAVR---------------QGDDEATLEVIEVHRVGN--SKEHLPL 307
Query: 129 PRSAGYGTFLAASVNLPFQSNALAG-AMAAGFHSRTLLNGNNMEHSAFGQWLGWLMAAIY 187
P +G ++ A + + NA A MA +T+ + + WL + + A+
Sbjct: 308 PSESGSNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALV 367
Query: 188 M 188
+
Sbjct: 368 L 368
>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2
Length = 397
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 179 LGWLMAAIYMGGRLPQIWLNIKRGSVEGLN 208
GW+ + PQIW N +R SVEGLN
Sbjct: 135 FGWVYFVAWSVSFYPQIWSNYRRKSVEGLN 164
>sp|P49790|NU153_HUMAN Nuclear pore complex protein Nup153 OS=Homo sapiens GN=NUP153 PE=1
SV=2
Length = 1475
Score = 32.7 bits (73), Expect = 3.1, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 68 TSARSLASSGTPPFRTFLRAAQSGPSALGLDNDSSS-----DDEAAAAAPTLSSSGNPPT 122
+++ + ++ TP F A+Q P G + S++ A T+SSS PP
Sbjct: 1314 SASPAFGANQTPTFGQSQGASQPNPPGFGSISSSTALFPTGSQPAPPTFGTVSSSSQPPV 1373
Query: 123 SQPRPIPRSAGYGT---------FLAASVNLPFQSNALAGAMAAGFHSRT 163
+P + G GT F +++ N F +N+ +G G +S T
Sbjct: 1374 FGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSST 1423
>sp|Q04GY8|ADDB_OENOB ATP-dependent helicase/deoxyribonuclease subunit B OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=rexB PE=3 SV=1
Length = 1161
Score = 31.2 bits (69), Expect = 8.1, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 6 TVVLVLQGVYYDHIFK----RLKGRHTKATRREEEEKKPLAPKSGDAAIPIPKASVKSSP 61
TV L G YY IF+ RL G+ T ++E K L+ +S I +P + S
Sbjct: 804 TVDAALSGTYYHSIFEQVINRLIGKRTDFHDLSDQELKKLSQESAQNLIELPDFQILQSD 863
Query: 62 RREYYYTSARSL 73
+++ ARSL
Sbjct: 864 --DHFRAVARSL 873
>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1
Length = 403
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 177 QWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLN 208
Q +GW A + PQ++LN KR SV GLN
Sbjct: 129 QIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLN 160
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis
thaliana GN=At2g02160 PE=1 SV=1
Length = 669
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 16/133 (12%)
Query: 9 LVLQGVYYDHIFKRLKGRHTK----------ATRREEEEKKPLAPKSG-DAAIPIPKASV 57
L QG D I RL+ H+ A RRE E+++ APKS + + P P
Sbjct: 446 LPSQGRLRDRIKGRLEENHSGNQERGFGAPWARRREMEDERKSAPKSSREESKPEPSLGK 505
Query: 58 KSSPRREYYYTSARSLASSGTP-PFRTFL---RAAQSGPSALGLDNDSSSDDEAAAAAPT 113
+ S E +++ RS S P PF L +AA SG S +++ S +EA
Sbjct: 506 RKS-FEEDHHSHKRSRDSFAAPLPFSEILKRKKAAASGGSRNNNKDETISKEEAGDEIKL 564
Query: 114 LSSSGNPPTSQPR 126
++ S+P+
Sbjct: 565 ITEEKTEVVSEPK 577
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,019,920
Number of Sequences: 539616
Number of extensions: 4467139
Number of successful extensions: 17433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 17127
Number of HSP's gapped (non-prelim): 389
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)