Query 045038
Match_columns 289
No_of_seqs 156 out of 1070
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2913 Predicted membrane pro 99.8 6.5E-20 1.4E-24 170.4 2.9 90 170-267 160-249 (260)
2 TIGR00951 2A43 Lysosomal Cysti 99.5 1.5E-14 3.3E-19 131.4 9.3 97 174-270 2-106 (220)
3 PF04193 PQ-loop: PQ loop repe 99.5 8.5E-14 1.8E-18 101.5 5.7 58 175-232 1-58 (61)
4 KOG2913 Predicted membrane pro 99.5 2.7E-13 5.7E-18 126.4 9.9 91 171-268 4-94 (260)
5 KOG3145 Cystine transporter Cy 99.4 4.7E-14 1E-18 133.1 -0.3 102 171-272 119-232 (372)
6 TIGR00951 2A43 Lysosomal Cysti 99.3 3.7E-12 8E-17 115.8 9.5 84 174-264 137-220 (220)
7 COG4095 Uncharacterized conser 99.0 3E-09 6.6E-14 84.4 9.1 84 175-266 4-87 (89)
8 KOG3145 Cystine transporter Cy 98.9 5.7E-10 1.2E-14 105.8 3.6 91 178-268 266-359 (372)
9 smart00679 CTNS Repeated motif 98.9 8.6E-10 1.9E-14 71.0 2.8 32 189-220 1-32 (32)
10 PF03083 MtN3_slv: Sugar efflu 98.5 1.1E-07 2.3E-12 73.9 4.9 83 178-268 5-87 (87)
11 KOG3211 Predicted endoplasmic 98.3 1.5E-06 3.2E-11 79.1 7.5 80 183-269 149-228 (230)
12 KOG3211 Predicted endoplasmic 96.7 0.0092 2E-07 54.8 8.8 87 171-264 26-112 (230)
13 PHA02246 hypothetical protein 96.1 0.035 7.5E-07 49.1 8.4 50 181-230 114-163 (192)
14 KOG1623 Multitransmembrane pro 95.8 0.0077 1.7E-07 56.3 3.3 87 175-268 5-94 (243)
15 KOG1623 Multitransmembrane pro 94.2 0.049 1.1E-06 51.0 3.8 86 174-268 123-212 (243)
16 PF00810 ER_lumen_recept: ER l 70.3 14 0.00031 32.0 6.2 54 172-225 89-142 (147)
17 PHA02246 hypothetical protein 69.9 4.9 0.00011 35.9 3.3 46 175-220 4-49 (192)
18 KOG2489 Transmembrane protein 65.2 9.9 0.00021 39.5 4.8 37 178-214 468-507 (592)
19 COG5196 ERD2 ER lumen protein 55.1 1.1E+02 0.0024 27.9 9.1 55 174-228 115-169 (214)
20 PF07578 LAB_N: Lipid A Biosyn 40.9 1.4E+02 0.0031 23.1 6.6 49 179-228 1-49 (72)
21 PF11712 Vma12: Endoplasmic re 34.3 97 0.0021 26.2 5.3 64 193-260 69-134 (142)
22 TIGR02736 cbb3_Q_epsi cytochro 32.9 17 0.00037 27.0 0.4 26 3-28 3-28 (56)
23 TIGR01478 STEVOR variant surfa 32.5 39 0.00084 32.8 2.8 33 241-273 260-293 (295)
24 KOG3106 ER lumen protein retai 31.7 1.2E+02 0.0027 28.0 5.7 72 195-276 20-91 (212)
25 PF04148 Erv26: Transmembrane 30.0 1.2E+02 0.0026 28.1 5.4 57 204-264 62-118 (211)
26 PRK11056 hypothetical protein; 29.3 2E+02 0.0042 24.6 6.1 30 195-224 51-81 (120)
27 PLN02841 GPI mannosyltransfera 27.7 1.5E+02 0.0032 30.4 6.1 72 185-262 342-416 (440)
28 PTZ00370 STEVOR; Provisional 27.2 41 0.00088 32.6 2.0 33 241-273 256-289 (296)
29 KOG0828 Predicted E3 ubiquitin 26.8 2.7E+02 0.0058 29.4 7.7 27 189-215 463-490 (636)
30 PF12273 RCR: Chitin synthesis 23.7 44 0.00096 27.8 1.4 7 242-248 2-8 (130)
31 PF05007 Mannosyl_trans: Manno 22.4 2.2E+02 0.0047 27.1 5.8 72 185-261 186-259 (259)
32 PRK10649 hypothetical protein; 21.0 4.3E+02 0.0093 27.7 8.2 26 176-201 14-39 (577)
No 1
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.78 E-value=6.5e-20 Score=170.42 Aligned_cols=90 Identities=44% Similarity=0.774 Sum_probs=84.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHH
Q 045038 170 MEHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVC 249 (289)
Q Consensus 170 ~~~~~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~ 249 (289)
.+++..|.++||+++++|.++|+|||++||++|+++|+++.||++++.||.+|..+ +++..|+||+.++..+
T Consensus 160 ~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s--------~~~~~n~~w~~~~~~~ 231 (260)
T KOG2913|consen 160 LEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS--------SYLVTNLPWLVDSKGT 231 (260)
T ss_pred hhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc--------cccccCCcccccCCcc
Confidence 56788999999999999999999999999999999999999999999999999887 4456799999999999
Q ss_pred HHHHHHHHHhhhhcccCC
Q 045038 250 VLLDLFIILQYIYYRYFR 267 (289)
Q Consensus 250 vlLDliIl~Q~~~Y~~~~ 267 (289)
..+|++++.|+++|++.+
T Consensus 232 ~~~D~~~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 232 IYLDIFIFLQFFNYRASK 249 (260)
T ss_pred hhHHHHHHHHHHHhhccc
Confidence 999999999999999887
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.55 E-value=1.5e-14 Score=131.36 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhhee----cchhhhhhhhh----hHHHH
Q 045038 174 AFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVR----TTEWESIKANM----PWLLD 245 (289)
Q Consensus 174 ~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~----s~~~~~l~~nl----P~Li~ 245 (289)
.++.++||+++++|+++++||+++|||+||++|+|+.|++++++|++++.++.+.. ..+.++...+. .+++.
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ 81 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFF 81 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHH
Confidence 46889999999999999999999999999999999999999999999999885432 11111111222 36999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCc
Q 045038 246 AIVCVLLDLFIILQYIYYRYFRKKS 270 (289)
Q Consensus 246 s~~~vlLDliIl~Q~~~Y~~~~~k~ 270 (289)
++++++++++++.|+.+|.+..++.
T Consensus 82 ai~~~il~~l~~~q~~~~~~~~~~~ 106 (220)
T TIGR00951 82 TLHAILICFIVLHQCGDYERGWQRV 106 (220)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999887665443
No 3
>PF04193 PQ-loop: PQ loop repeat
Probab=99.46 E-value=8.5e-14 Score=101.49 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecch
Q 045038 175 FGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTE 232 (289)
Q Consensus 175 ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~ 232 (289)
++.++|++++++++++++|||++|||+||++|+|+.+++++++|+++++++.+....+
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999999999999999999999999999999988776543
No 4
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.46 E-value=2.7e-13 Score=126.40 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHH
Q 045038 171 EHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCV 250 (289)
Q Consensus 171 ~~~~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~v 250 (289)
..+.++.++|.++.+||++..+|||++|||+|+++|+|+.|++.|++|+++++++.++..+.. -.++.+...+
T Consensus 4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~-------~~~~~~~yy~ 76 (260)
T KOG2913|consen 4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGS-------TLKVQAVYYT 76 (260)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccch-------hHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999988865432 1255577788
Q ss_pred HHHHHHHHhhhhcccCCC
Q 045038 251 LLDLFIILQYIYYRYFRK 268 (289)
Q Consensus 251 lLDliIl~Q~~~Y~~~~~ 268 (289)
+.|++++.|++||+...+
T Consensus 77 ~~d~~l~~q~~yy~~~~~ 94 (260)
T KOG2913|consen 77 LADSVLFVQCLYYGNIYP 94 (260)
T ss_pred HHHHHHHHHHHhcchhcc
Confidence 999999999999998766
No 5
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.38 E-value=4.7e-14 Score=133.10 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=83.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhhee--cc----hh--hhhhhh---
Q 045038 171 EHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVR--TT----EW--ESIKAN--- 239 (289)
Q Consensus 171 ~~~~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~--s~----~~--~~l~~n--- 239 (289)
...++.+++||++.+.|.+++.||||+||||||+.||+++|+.+++.|...|.+..+.. .. +. .+-..-
T Consensus 119 ~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv 198 (372)
T KOG3145|consen 119 ALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPV 198 (372)
T ss_pred hHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCcc
Confidence 45688999999999999999999999999999999999999999999999999876542 10 11 110111
Q ss_pred -hhHHHHHHHHHHHHHHHHHhhhhcccCCCCcCC
Q 045038 240 -MPWLLDAIVCVLLDLFIILQYIYYRYFRKKSAD 272 (289)
Q Consensus 240 -lP~Li~s~~~vlLDliIl~Q~~~Y~~~~~k~~~ 272 (289)
.-.+++++|++++.++++.||+.|.|..|+...
T Consensus 199 ~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~ 232 (372)
T KOG3145|consen 199 TLNDVVFSLHAVLMTVITILQCFFYERGWQRVSK 232 (372)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhhcccccch
Confidence 124889999999999999999999998887654
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.35 E-value=3.7e-12 Score=115.84 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHH
Q 045038 174 AFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLD 253 (289)
Q Consensus 174 ~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLD 253 (289)
..-..++.+..++.+++++||+++|||||||+|+|+..++++++|.+-.++..+... .|...+.....++++|
T Consensus 137 ~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~-------gd~~~l~~~~~s~~~n 209 (220)
T TIGR00951 137 AFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNET-------GDPLKAGLFVVSSLFN 209 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHH
Confidence 344668889999999999999999999999999999999999999888777655322 4556688889999999
Q ss_pred HHHHHhhhhcc
Q 045038 254 LFIILQYIYYR 264 (289)
Q Consensus 254 liIl~Q~~~Y~ 264 (289)
++++.|+++|+
T Consensus 210 ~i~~~Q~~~y~ 220 (220)
T TIGR00951 210 GLFAAQVFFYW 220 (220)
T ss_pred HHHHHHHhhcC
Confidence 99999999986
No 7
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3e-09 Score=84.40 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHHH
Q 045038 175 FGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDL 254 (289)
Q Consensus 175 ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLDl 254 (289)
.-.++||+++.+..++++||.++.+|.|+++++|+.|+....+|-.+|+++ +.+..++|.++++...+++++
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliy--------gILi~~lPii~aN~i~~il~l 75 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY--------GILINDLPIIIANIISFILSL 75 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH--------HHHHccCcchhHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999986 555668999999999999999
Q ss_pred HHHHhhhhcccC
Q 045038 255 FIILQYIYYRYF 266 (289)
Q Consensus 255 iIl~Q~~~Y~~~ 266 (289)
++++-...|..+
T Consensus 76 iIl~~kI~~~~k 87 (89)
T COG4095 76 IILFYKIKYILK 87 (89)
T ss_pred HHHHHHHHHHHh
Confidence 999988877654
No 8
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=98.93 E-value=5.7e-10 Score=105.75 Aligned_cols=91 Identities=15% Similarity=0.290 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheec---chhhhhhhhhhHHHHHHHHHHHHH
Q 045038 178 WLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRT---TEWESIKANMPWLLDAIVCVLLDL 254 (289)
Q Consensus 178 vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s---~~~~~l~~nlP~Li~s~~~vlLDl 254 (289)
.+.++...+.++.++||.++||+||||+|+|+.-+++++.|+.+.+++.+++. ++|.-+-.|+-....+.+++++|+
T Consensus 266 ~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~Fdi 345 (372)
T KOG3145|consen 266 NLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDI 345 (372)
T ss_pred HHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHH
Confidence 35667788889999999999999999999999999999999999999988863 457767778778888899999999
Q ss_pred HHHHhhhhcccCCC
Q 045038 255 FIILQYIYYRYFRK 268 (289)
Q Consensus 255 iIl~Q~~~Y~~~~~ 268 (289)
+.++|++.|.++++
T Consensus 346 iFm~QhyVly~~~~ 359 (372)
T KOG3145|consen 346 IFMMQHYVLYPRGH 359 (372)
T ss_pred HHHhhheeEecccc
Confidence 99999985554433
No 9
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.90 E-value=8.6e-10 Score=70.99 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHhcCCcCccCHHHHHHHHHHhH
Q 045038 189 GGRLPQIWLNIKRGSVEGLNPLMFVFALVANV 220 (289)
Q Consensus 189 ~srIPQIi~NyRrKSteGLS~~~~ll~liGni 220 (289)
++++||+++|||+|+++|+|+.|++++++|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 46899999999999999999999999999974
No 10
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.54 E-value=1.1e-07 Score=73.89 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 045038 178 WLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDLFII 257 (289)
Q Consensus 178 vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLDliIl 257 (289)
++|.+..++-.++.+||+++.+|+|+++++|+.++++.++++++|+.+-+. .+|.+.++.++..+++.++.+
T Consensus 5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l--------~~d~~i~~~N~~g~~~~~~~~ 76 (87)
T PF03083_consen 5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL--------INDWPIIVPNVFGLVLSIIYL 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh--------cCCeeEEeeHHHHHHHHHHHH
Confidence 356666677778889999999999999999999999999999999987444 345566888888999999999
Q ss_pred HhhhhcccCCC
Q 045038 258 LQYIYYRYFRK 268 (289)
Q Consensus 258 ~Q~~~Y~~~~~ 268 (289)
+-+++|.++++
T Consensus 77 ~~~~~y~~~~~ 87 (87)
T PF03083_consen 77 VVYYIYPSKKK 87 (87)
T ss_pred hheEEeCCCCC
Confidence 99998887643
No 11
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=79.12 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=65.1
Q ss_pred HHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 045038 183 MAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDLFIILQYIY 262 (289)
Q Consensus 183 s~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLDliIl~Q~~~ 262 (289)
...+...+|++||+.|||+|+++.+|....++.+.|...++++.+-...| +-.++......++|.+|.+|++.
T Consensus 149 ~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d-------~~mll~~v~s~~~Ng~i~aq~l~ 221 (230)
T KOG3211|consen 149 CLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGD-------FLMLLRFVISLALNGLITAQVLR 221 (230)
T ss_pred CchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCC-------hhhHHHHHHHHHHhHHHHHHHHH
Confidence 33456678999999999999999999999999999999998876643322 22366667789999999999999
Q ss_pred cccCCCC
Q 045038 263 YRYFRKK 269 (289)
Q Consensus 263 Y~~~~~k 269 (289)
||+...+
T Consensus 222 Y~s~~~~ 228 (230)
T KOG3211|consen 222 YWSTAIK 228 (230)
T ss_pred HHhcCCC
Confidence 9976443
No 12
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.71 E-value=0.0092 Score=54.75 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHH
Q 045038 171 EHSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCV 250 (289)
Q Consensus 171 ~~~~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~v 250 (289)
-.-.++..+||.-..-.+.-++|||.+.-..||++|||..-+.+-++|....+.+.+..+-++.-. ...| +-+
T Consensus 26 l~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~-gE~~------fLl 98 (230)
T KOG3211|consen 26 LKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSY-GEYP------FLL 98 (230)
T ss_pred hHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhH-HHHH------HHH
Confidence 356788999999999999999999999999999999999999999999988777666544322111 1122 234
Q ss_pred HHHHHHHHhhhhcc
Q 045038 251 LLDLFIILQYIYYR 264 (289)
Q Consensus 251 lLDliIl~Q~~~Y~ 264 (289)
+-+.+++.++++|+
T Consensus 99 ~Q~vili~~if~f~ 112 (230)
T KOG3211|consen 99 LQAVILILCIFHFS 112 (230)
T ss_pred HHHHHHHHHHHHhc
Confidence 55677777777777
No 13
>PHA02246 hypothetical protein
Probab=96.08 E-value=0.035 Score=49.15 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheec
Q 045038 181 WLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRT 230 (289)
Q Consensus 181 ~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s 230 (289)
.++..--..+.+|||+.=||.|+.||.++++.++.-.|-.+-.++..+..
T Consensus 114 tVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth 163 (192)
T PHA02246 114 TVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH 163 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC
Confidence 34444456689999999999999999999999999999988777666543
No 14
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=95.80 E-value=0.0077 Score=56.26 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHH---HhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHH
Q 045038 175 FGQWLGWLMAAIY---MGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVL 251 (289)
Q Consensus 175 ig~vLG~is~vl~---~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vl 251 (289)
+..++|..+.+++ +.+.+|=.++.+||||+||.|..=+++.+++..+|+-+-+....|+ ..+.-+++.++
T Consensus 5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-------llitIN~~G~~ 77 (243)
T KOG1623|consen 5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-------LLITINGIGLV 77 (243)
T ss_pred HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-------EEEEEehhcHH
Confidence 3445555555444 4678899999999999999999999999999999988754433221 12444666777
Q ss_pred HHHHHHHhhhhcccCCC
Q 045038 252 LDLFIILQYIYYRYFRK 268 (289)
Q Consensus 252 LDliIl~Q~~~Y~~~~~ 268 (289)
+..+-+.-|++|-.+++
T Consensus 78 ie~~Yi~~f~~ya~~k~ 94 (243)
T KOG1623|consen 78 IETVYISIFLYYAPKKK 94 (243)
T ss_pred HHHHHHHHHheecCchh
Confidence 78888888888876655
No 15
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=94.19 E-value=0.049 Score=50.96 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHh---hhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhH-HHHHHHH
Q 045038 174 AFGQWLGWLMAAIYMG---GRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPW-LLDAIVC 249 (289)
Q Consensus 174 ~ig~vLG~is~vl~~~---srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~-Li~s~~~ 249 (289)
...+.+|++++++..+ +.+=-+.+-.|+||+|.++..+.+..++-...|.++-++.+ .++ .+-+++.
T Consensus 123 ~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~---------D~~IaipN~iG 193 (243)
T KOG1623|consen 123 RRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIK---------DFFIAIPNVLG 193 (243)
T ss_pred eeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhc---------CeEEEcccHHH
Confidence 3445677777665544 67777889999999999999998888888888877644331 112 2344556
Q ss_pred HHHHHHHHHhhhhcccCCC
Q 045038 250 VLLDLFIILQYIYYRYFRK 268 (289)
Q Consensus 250 vlLDliIl~Q~~~Y~~~~~ 268 (289)
+++.++-++-|+.|.+.+.
T Consensus 194 ~~l~~~QL~Ly~~y~~~~~ 212 (243)
T KOG1623|consen 194 FLLGLIQLILYFKYPKTTE 212 (243)
T ss_pred HHHHHHHHHHhhhcCCCcc
Confidence 6777766666665555443
No 16
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=70.29 E-value=14 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhh
Q 045038 172 HSAFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLS 225 (289)
Q Consensus 172 ~~~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~is 225 (289)
+..+.+++=..+..+..++-+||+++-.|++.+|.+-..+++..-+.-++|++.
T Consensus 89 ~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~~ 142 (147)
T PF00810_consen 89 SFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLLN 142 (147)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHHH
Confidence 446667777788999999999999999999999999999998888777777653
No 17
>PHA02246 hypothetical protein
Probab=69.89 E-value=4.9 Score=35.85 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhH
Q 045038 175 FGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANV 220 (289)
Q Consensus 175 ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni 220 (289)
++-.+..+.+.+-..+.+||.-.-.|.|+++|.|-+|..+...-..
T Consensus 4 ~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvg 49 (192)
T PHA02246 4 LSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVG 49 (192)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 5567888899999999999999999999999999988766554333
No 18
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=65.17 E-value=9.9 Score=39.45 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhh---hhhHHHHHHhcCCcCccCHHHHHH
Q 045038 178 WLGWLMAAIYMGG---RLPQIWLNIKRGSVEGLNPLMFVF 214 (289)
Q Consensus 178 vLG~is~vl~~~s---rIPQIi~NyRrKSteGLS~~~~ll 214 (289)
+|-.+...+++++ -+||..-|||.|||.-|..-|+.-
T Consensus 468 vLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 468 VLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 3444444444444 469999999999999999988753
No 19
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=55.08 E-value=1.1e+02 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhhe
Q 045038 174 AFGQWLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVV 228 (289)
Q Consensus 174 ~ig~vLG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l 228 (289)
.+++++=..+.-+..++-+||.++--+.+.+|.+-...++...+=-..|.-.-++
T Consensus 115 tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~ 169 (214)
T COG5196 115 TISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWIL 169 (214)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHH
Confidence 3777777788888889999999999999999999999888777666666655444
No 20
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=40.87 E-value=1.4e+02 Score=23.12 Aligned_cols=49 Identities=8% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhhe
Q 045038 179 LGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVV 228 (289)
Q Consensus 179 LG~is~vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l 228 (289)
+|.++-+++..-++=|-+..=|+|.. -++..|..+.++|+++-+++.+.
T Consensus 1 iG~~gq~lF~~Rf~~QW~~SEk~k~s-v~P~~FW~lSl~Gs~lll~Y~i~ 49 (72)
T PF07578_consen 1 IGFIGQLLFSSRFIVQWIYSEKAKKS-VVPVAFWYLSLIGSLLLLIYAII 49 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999988888776 58889999999999998887554
No 21
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=34.33 E-value=97 Score=26.20 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=29.1
Q ss_pred hHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhh-hh-eecchhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 045038 193 PQIWLNIKRGSVEGLNPLMFVFALVANVTYVLS-IV-VRTTEWESIKANMPWLLDAIVCVLLDLFIILQY 260 (289)
Q Consensus 193 PQIi~NyRrKSteGLS~~~~ll~liGni~y~is-i~-l~s~~~~~l~~nlP~Li~s~~~vlLDliIl~Q~ 260 (289)
.|.++++++.=+-++++.+-++......+|... .+ ..+.....+. =+++++++.+.++++++-+
T Consensus 69 ~~~~k~~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvll----gl~~al~vlvAEv~l~~~y 134 (142)
T PF11712_consen 69 AQELKSVKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLL----GLFGALLVLVAEVVLYIRY 134 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 355666666555555555544444444443322 22 1111111111 1455555666676666543
No 22
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=32.89 E-value=17 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=18.8
Q ss_pred eeehhhhhhhhhhccchhhccccccC
Q 045038 3 TISTVVLVLQGVYYDHIFKRLKGRHT 28 (289)
Q Consensus 3 titt~vL~~q~~yY~~iy~~~k~~~~ 28 (289)
+-..+++.+=.+-|+||||-.|.+|.
T Consensus 3 ~yf~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 3 AYFAFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33445566667889999998888754
No 23
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=32.50 E-value=39 Score=32.75 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh-hhcccCCCCcCCC
Q 045038 241 PWLLDAIVCVLLDLFIILQY-IYYRYFRKKSADY 273 (289)
Q Consensus 241 P~Li~s~~~vlLDliIl~Q~-~~Y~~~~~k~~~~ 273 (289)
|+=+.+++-+++-.++++-| |+||+++..+..|
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 56555666666666666665 7899887777654
No 24
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=1.2e+02 Score=27.96 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcccCCCCcCCCC
Q 045038 195 IWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDLFIILQYIYYRYFRKKSADYG 274 (289)
Q Consensus 195 Ii~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLDliIl~Q~~~Y~~~~~k~~~~~ 274 (289)
|++.+|.|+++|+|.-.=.+-.+=-+++.+-.|.+ +..+.+.+..++ ++.....++.-+.. +-+..-+++
T Consensus 20 i~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~~---~~s~ynt~mki~----fl~~t~~ivymi~~---k~~~tYd~~ 89 (212)
T KOG3106|consen 20 ILKIWKTKSCAGISLKSQELFALVFATRYLDLFTF---YESLYNTIMKIA----FLASTLWIVYMIRF---KLRATYDKE 89 (212)
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHhcc
Q ss_pred CC
Q 045038 275 ED 276 (289)
Q Consensus 275 ~d 276 (289)
.|
T Consensus 90 ~D 91 (212)
T KOG3106|consen 90 KD 91 (212)
T ss_pred cC
No 25
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=30.03 E-value=1.2e+02 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.350 Sum_probs=42.6
Q ss_pred cCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 045038 204 VEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANMPWLLDAIVCVLLDLFIILQYIYYR 264 (289)
Q Consensus 204 teGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nlP~Li~s~~~vlLDliIl~Q~~~Y~ 264 (289)
+||+++...++-++.+.+|.--+ .++.++.-.-|..+++++.+++|=+++++++--.
T Consensus 62 ~D~~P~~~~l~si~s~~~Y~~~L----~~fP~i~ltsp~Fi~S~~lvi~nH~lwf~~F~~~ 118 (211)
T PF04148_consen 62 FDGFPFWLTLFSIFSHLVYLRNL----RTFPFISLTSPSFILSCVLVILNHFLWFRHFSSP 118 (211)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh----CCCCeeecCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999998888888886432 2233333344678888889999999999987655
No 26
>PRK11056 hypothetical protein; Provisional
Probab=29.34 E-value=2e+02 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHhcCC-cCccCHHHHHHHHHHhHHHhh
Q 045038 195 IWLNIKRGS-VEGLNPLMFVFALVANVTYVL 224 (289)
Q Consensus 195 Ii~NyRrKS-teGLS~~~~ll~liGni~y~i 224 (289)
.++-|.++. .||++.....+.++|.+.|..
T Consensus 51 LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (120)
T PRK11056 51 LHQRYLNRPMPEGLPGLAAACFFLGVFLYSA 81 (120)
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 344444444 569999999999999999854
No 27
>PLN02841 GPI mannosyltransferase
Probab=27.67 E-value=1.5e+02 Score=30.39 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=47.5
Q ss_pred HHHHhhhhhHHHHHHhcCC-cCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhhh--hHHHHHHHHHHHHHHHHHhhh
Q 045038 185 AIYMGGRLPQIWLNIKRGS-VEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKANM--PWLLDAIVCVLLDLFIILQYI 261 (289)
Q Consensus 185 vl~~~srIPQIi~NyRrKS-teGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~nl--P~Li~s~~~vlLDliIl~Q~~ 261 (289)
++|.+..+|=++.|.+.+. ..| ...+++|+++-..|+.....- ++...|. ..-+.+++.++.|+.++.|++
T Consensus 342 F~Wyl~lLPl~l~~~~~~~~~~~--~~~l~lW~~~Q~~WL~~aY~L----EF~G~n~F~~lw~asl~Ff~~n~~il~~~i 415 (440)
T PLN02841 342 FVWFFCLLPLILPWSRMKLKWKG--LLCILVWMGSQLHWLMWAYLL----EFKGRNVFLQLWIASLLFLAANTFVLLMII 415 (440)
T ss_pred HHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHh----HhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888876665543 344 577799999999998764331 2211121 123446678889999999988
Q ss_pred h
Q 045038 262 Y 262 (289)
Q Consensus 262 ~ 262 (289)
-
T Consensus 416 ~ 416 (440)
T PLN02841 416 Q 416 (440)
T ss_pred H
Confidence 3
No 28
>PTZ00370 STEVOR; Provisional
Probab=27.23 E-value=41 Score=32.63 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHhh-hhcccCCCCcCCC
Q 045038 241 PWLLDAIVCVLLDLFIILQY-IYYRYFRKKSADY 273 (289)
Q Consensus 241 P~Li~s~~~vlLDliIl~Q~-~~Y~~~~~k~~~~ 273 (289)
|+=+.+++-+++-.++++-| |+||++++.+..|
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 56555666666666666665 7899887766554
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.82 E-value=2.7e+02 Score=29.41 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHhcCCcC-ccCHHHHHHH
Q 045038 189 GGRLPQIWLNIKRGSVE-GLNPLMFVFA 215 (289)
Q Consensus 189 ~srIPQIi~NyRrKSte-GLS~~~~ll~ 215 (289)
--+||||+.|-.|+.-. -|-+.+++..
T Consensus 463 SfWIPQIv~Nvvrg~SR~Pl~w~yIlG~ 490 (636)
T KOG0828|consen 463 SFWIPQIVANVVRGDSRKPLHWYYILGM 490 (636)
T ss_pred hhhHHHHHHHHhcCCCCCCcchhhhhhH
Confidence 35899999999997333 2445554433
No 30
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.68 E-value=44 Score=27.77 Aligned_cols=7 Identities=57% Similarity=1.189 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 045038 242 WLLDAIV 248 (289)
Q Consensus 242 ~Li~s~~ 248 (289)
|++++++
T Consensus 2 W~l~~ii 8 (130)
T PF12273_consen 2 WVLFAII 8 (130)
T ss_pred eeeHHHH
Confidence 3444443
No 31
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=22.36 E-value=2.2e+02 Score=27.10 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHhhhhhHHHHHHhcCCcCccCHHHHHHHHHHhHHHhhhhheecchhhhhhhh--hhHHHHHHHHHHHHHHHHHhhh
Q 045038 185 AIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALVANVTYVLSIVVRTTEWESIKAN--MPWLLDAIVCVLLDLFIILQYI 261 (289)
Q Consensus 185 vl~~~srIPQIi~NyRrKSteGLS~~~~ll~liGni~y~isi~l~s~~~~~l~~n--lP~Li~s~~~vlLDliIl~Q~~ 261 (289)
.+|.+..+|=+..|.+..+.. -...++++|+++-..|+.....- ++...| .+.-+.++..++.|+.++.|++
T Consensus 186 F~Wyl~lLPl~l~~~~l~s~~-~~~~~l~~W~~~Q~~WL~~AY~L----EF~G~n~F~~lw~asl~Ff~~N~~iL~~~I 259 (259)
T PF05007_consen 186 FLWYLCLLPLVLPRSRLLSWR-KGVFLLALWVASQALWLLQAYLL----EFLGKNTFLPLWLASLVFFIANVWILGQII 259 (259)
T ss_pred HHHHHHHHHHHhchhccchHH-HHHHHHHHHHHHHHHHHHHHHHh----hhcCcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 588999999999998874321 13467789999999998754321 111112 2334566778889999998863
No 32
>PRK10649 hypothetical protein; Provisional
Probab=20.99 E-value=4.3e+02 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhc
Q 045038 176 GQWLGWLMAAIYMGGRLPQIWLNIKR 201 (289)
Q Consensus 176 g~vLG~is~vl~~~srIPQIi~NyRr 201 (289)
-..+||+...+|.++-++|++.-.--
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (577)
T PRK10649 14 WKALGWALLFFWFFSTLLQAIIYISG 39 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34589999999999999999986543
Done!