Query 045038
Match_columns 289
No_of_seqs 156 out of 1070
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljb_A M2 protein, BM2 protein 21.3 1E+02 0.0034 19.9 3.3 24 172-195 9-32 (35)
2 3l1l_A Arginine/agmatine antip 17.5 5.4E+02 0.019 23.0 9.3 9 213-221 389-397 (445)
3 2knc_A Integrin alpha-IIB; tra 14.5 2.9E+02 0.0098 19.3 4.7 12 256-267 32-43 (54)
4 2l2t_A Receptor tyrosine-prote 12.3 2.3E+02 0.0079 19.0 3.5 30 239-268 8-38 (44)
5 2jwa_A Receptor tyrosine-prote 10.7 1.8E+02 0.0063 19.5 2.6 27 240-266 11-37 (44)
6 3lbw_A M2 protein; proton chan 10.1 2.4E+02 0.0081 16.5 2.6 19 174-192 4-22 (23)
7 3bkd_A Transmembrane domain of 9.9 2.3E+02 0.008 17.0 2.6 20 173-192 6-25 (26)
8 2l8s_A Integrin alpha-1; trans 8.8 4.3E+02 0.015 18.4 4.0 12 256-267 29-40 (54)
9 2k9y_A Ephrin type-A receptor 7.7 4.3E+02 0.015 16.4 3.5 8 239-246 11-18 (41)
10 4djk_A Probable glutamate/gamm 7.6 1.2E+03 0.041 21.2 8.2 13 212-224 413-425 (511)
No 1
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=21.30 E-value=1e+02 Score=19.86 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHH
Q 045038 172 HSAFGQWLGWLMAAIYMGGRLPQI 195 (289)
Q Consensus 172 ~~~ig~vLG~is~vl~~~srIPQI 195 (289)
.-+++.++|.+-..+|++.|+-|+
T Consensus 9 lviaA~IigiLHlilWildrLff~ 32 (35)
T 2ljb_A 9 LVVAASIIGILHFIAWTIGHLNQI 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhh
Confidence 457889999999999999998776
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.55 E-value=5.4e+02 Score=23.02 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=3.8
Q ss_pred HHHHHHhHH
Q 045038 213 VFALVANVT 221 (289)
Q Consensus 213 ll~liGni~ 221 (289)
++.++|.++
T Consensus 389 ~~~~~~~~~ 397 (445)
T 3l1l_A 389 AVTTIAFLY 397 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.53 E-value=2.9e+02 Score=19.29 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=5.7
Q ss_pred HHHhhhhcccCC
Q 045038 256 IILQYIYYRYFR 267 (289)
Q Consensus 256 Il~Q~~~Y~~~~ 267 (289)
+++.+=+|+++.
T Consensus 32 ~LwK~GFFkR~~ 43 (54)
T 2knc_A 32 AMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHTTTTC
T ss_pred HHHHcCcccCCC
Confidence 334444555544
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.27 E-value=2.3e+02 Score=18.97 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=13.8
Q ss_pred hhhHHHHHHHH-HHHHHHHHHhhhhcccCCC
Q 045038 239 NMPWLLDAIVC-VLLDLFIILQYIYYRYFRK 268 (289)
Q Consensus 239 nlP~Li~s~~~-vlLDliIl~Q~~~Y~~~~~ 268 (289)
|.|-|...++. +++-+++..-.|+|.++++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34445444433 4444444444455554433
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.70 E-value=1.8e+02 Score=19.50 Aligned_cols=27 Identities=15% Similarity=0.168 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccC
Q 045038 240 MPWLLDAIVCVLLDLFIILQYIYYRYF 266 (289)
Q Consensus 240 lP~Li~s~~~vlLDliIl~Q~~~Y~~~ 266 (289)
.|.+++.++.+++-+++..-.++|-++
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 455666666655555555554555443
No 6
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=10.07 E-value=2.4e+02 Score=16.50 Aligned_cols=19 Identities=16% Similarity=0.224 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 045038 174 AFGQWLGWLMAAIYMGGRL 192 (289)
Q Consensus 174 ~ig~vLG~is~vl~~~srI 192 (289)
++..++|.+-..+|+.-|+
T Consensus 4 ~aa~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 4 VAASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 4678899999999998775
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=9.94 E-value=2.3e+02 Score=16.95 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 045038 173 SAFGQWLGWLMAAIYMGGRL 192 (289)
Q Consensus 173 ~~ig~vLG~is~vl~~~srI 192 (289)
-++..++|.+-..+|+.-|+
T Consensus 6 v~aa~iiGilHLiLwIldrl 25 (26)
T 3bkd_A 6 VVAASIMGILHLILWILDRL 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhhc
Confidence 35678899999999998764
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.79 E-value=4.3e+02 Score=18.44 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=5.1
Q ss_pred HHHhhhhcccCC
Q 045038 256 IILQYIYYRYFR 267 (289)
Q Consensus 256 Il~Q~~~Y~~~~ 267 (289)
+++.+=+|+++.
T Consensus 29 ~LwK~GFFKR~~ 40 (54)
T 2l8s_A 29 ALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHcCcccCCC
Confidence 334444454443
No 9
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=7.74 E-value=4.3e+02 Score=16.41 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=3.6
Q ss_pred hhhHHHHH
Q 045038 239 NMPWLLDA 246 (289)
Q Consensus 239 nlP~Li~s 246 (289)
++++++.+
T Consensus 11 ~~~~I~~~ 18 (41)
T 2k9y_A 11 GNLAVIGG 18 (41)
T ss_dssp SSTHHHHH
T ss_pred ceEEEEee
Confidence 44454443
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=7.65 E-value=1.2e+03 Score=21.18 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=5.7
Q ss_pred HHHHHHHhHHHhh
Q 045038 212 FVFALVANVTYVL 224 (289)
Q Consensus 212 ~ll~liGni~y~i 224 (289)
.++.++|.+.-++
T Consensus 413 ~~~~~~~~~~~~~ 425 (511)
T 4djk_A 413 LVVAIVGLLTSIM 425 (511)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
Done!