Query 045038
Match_columns 289
No_of_seqs 156 out of 1070
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 16:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xu1r_ g.24.1.2 (R:) Tumor ne 12.7 21 0.0016 21.9 0.1 12 12-23 8-19 (38)
2 d1jb0i_ f.23.17.1 (I:) Subunit 11.3 91 0.0066 18.8 2.7 25 239-263 9-33 (38)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 8.2 1.1E+02 0.0081 21.1 2.7 20 250-269 30-49 (91)
4 d1eema2 c.47.1.5 (A:5-102) Cla 6.4 84 0.0061 21.7 1.2 12 69-80 1-12 (98)
5 d1t5ja_ a.209.1.1 (A:) Hypothe 6.4 1.6E+02 0.012 23.3 3.3 30 169-198 251-280 (301)
6 d1iwga8 f.35.1.1 (A:513-566,A: 5.3 2.4E+02 0.018 21.8 3.7 18 246-263 120-137 (222)
7 d1kl7a_ c.79.1.1 (A:) Threonin 4.3 93 0.0068 28.4 0.3 17 9-25 246-262 (511)
8 d1g0da2 b.1.5.1 (A:472-583) Tr 4.3 24 0.0018 25.7 -3.2 22 5-26 33-55 (112)
9 d1vjja2 b.1.5.1 (A:479-593) Tr 3.4 67 0.0049 23.1 -1.4 18 5-22 36-53 (115)
10 d2q3za2 b.1.5.1 (A:472-585) Tr 3.2 70 0.0051 23.0 -1.4 21 5-25 34-55 (114)
No 1
>d1xu1r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 13B, TACI {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.73 E-value=21 Score=21.86 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=9.6
Q ss_pred hhhhccchhhcc
Q 045038 12 QGVYYDHIFKRL 23 (289)
Q Consensus 12 q~~yY~~iy~~~ 23 (289)
|..||||.-+.+
T Consensus 8 qG~YYD~Ll~~C 19 (38)
T d1xu1r_ 8 QGKFYDHLLRDC 19 (38)
T ss_dssp GTEEEETTTTEE
T ss_pred hchHHHHHHHHH
Confidence 889999987654
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.30 E-value=91 Score=18.80 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhc
Q 045038 239 NMPWLLDAIVCVLLDLFIILQYIYY 263 (289)
Q Consensus 239 nlP~Li~s~~~vlLDliIl~Q~~~Y 263 (289)
-+|||+--+++.++-.++..-.++|
T Consensus 9 yLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHhee
Confidence 4789888888877777666665555
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.19 E-value=1.1e+02 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhcccCCCC
Q 045038 250 VLLDLFIILQYIYYRYFRKK 269 (289)
Q Consensus 250 vlLDliIl~Q~~~Y~~~~~k 269 (289)
++.-..++.-.+.||+++.+
T Consensus 30 v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp THHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHhhheeeeccCCc
Confidence 33444444445566655443
No 4
>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.37 E-value=84 Score=21.68 Aligned_cols=12 Identities=58% Similarity=0.908 Sum_probs=8.9
Q ss_pred ccccccCCCCCC
Q 045038 69 SARSLASSGTPP 80 (289)
Q Consensus 69 sArsls~s~tp~ 80 (289)
|||||++...|+
T Consensus 1 ~~~~l~~~s~~p 12 (98)
T d1eema2 1 SARSLGKGSAPP 12 (98)
T ss_dssp CCCCBCTTCCCC
T ss_pred CcccccCCCCCC
Confidence 789998766655
No 5
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.36 E-value=1.6e+02 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=25.5
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 045038 169 NMEHSAFGQWLGWLMAAIYMGGRLPQIWLN 198 (289)
Q Consensus 169 ~~~~~~ig~vLG~is~vl~~~srIPQIi~N 198 (289)
++..+..+.++|.+..+.+-..-||+-|++
T Consensus 251 GgDtdt~aai~Gal~GA~~G~~~IP~~w~~ 280 (301)
T d1t5ja_ 251 GGDTDSLASMYGAMAGAYYGFKNIPKEWID 280 (301)
T ss_dssp CBSHHHHHHHHHHHHHHHHCGGGSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhChhcCCHHHHH
Confidence 345778999999999999999999998754
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.31 E-value=2.4e+02 Score=21.85 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 045038 246 AIVCVLLDLFIILQYIYY 263 (289)
Q Consensus 246 s~~~vlLDliIl~Q~~~Y 263 (289)
.++..+-|.+++...+..
T Consensus 120 l~Gi~v~~~i~~~~~~~~ 137 (222)
T d1iwga8 120 TIGLSAKNAILIVEFAKD 137 (222)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhcc
Confidence 344556666666666543
No 7
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.35 E-value=93 Score=28.45 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.9
Q ss_pred hhhhhhhccchhhcccc
Q 045038 9 LVLQGVYYDHIFKRLKG 25 (289)
Q Consensus 9 L~~q~~yY~~iy~~~k~ 25 (289)
|++|++||=|-|-+++.
T Consensus 246 ll~QivyYf~ay~q~~~ 262 (511)
T d1kl7a_ 246 ILAQMTYYFYSFFQATN 262 (511)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHHhh
Confidence 68999999999966543
No 8
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=4.34 E-value=24 Score=25.69 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=16.4
Q ss_pred ehhhhhhhhhhccchhhc-cccc
Q 045038 5 STVVLVLQGVYYDHIFKR-LKGR 26 (289)
Q Consensus 5 tt~vL~~q~~yY~~iy~~-~k~~ 26 (289)
.++.|.+|++||-..-.. +|.+
T Consensus 33 v~l~l~a~~v~YtG~~~~~~~~~ 55 (112)
T d1g0da2 33 AQLTMLAMAVTYNSLRRGECQRK 55 (112)
T ss_dssp EEEEEEEEEECTTCBCCCCCCEE
T ss_pred EEEEEEEEEEEeCCcCccceeEe
Confidence 358899999999887754 3443
No 9
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=3.38 E-value=67 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.0
Q ss_pred ehhhhhhhhhhccchhhc
Q 045038 5 STVVLVLQGVYYDHIFKR 22 (289)
Q Consensus 5 tt~vL~~q~~yY~~iy~~ 22 (289)
.++.|.+|++||-.+-+.
T Consensus 36 v~l~l~a~av~YtG~~~~ 53 (115)
T d1vjja2 36 VTVNMTAWTIIYNGTLVH 53 (115)
T ss_dssp EEEEEEEEEECTTCCEEE
T ss_pred EEEEEEEEEEEeCCcCch
Confidence 467899999999988765
No 10
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Probab=3.23 E-value=70 Score=23.01 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.1
Q ss_pred ehhhhhhhhhhccchhhc-ccc
Q 045038 5 STVVLVLQGVYYDHIFKR-LKG 25 (289)
Q Consensus 5 tt~vL~~q~~yY~~iy~~-~k~ 25 (289)
.+++|.+|++||-.+-.. +|.
T Consensus 34 v~l~l~a~~v~YtG~~~~~~~~ 55 (114)
T d2q3za2 34 CRLLLCARTVSYNGILGPECGT 55 (114)
T ss_dssp EEEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEEEEeCCcCcceeEE
Confidence 367899999999888663 543
Done!